Query 041549
Match_columns 218
No_of_seqs 125 out of 1199
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:17:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02590 probable tyrosine dec 100.0 9.1E-46 2E-50 339.7 18.9 196 2-203 325-534 (539)
2 PLN02880 tyrosine decarboxylas 100.0 6E-42 1.3E-46 313.0 18.7 198 2-205 277-488 (490)
3 KOG0628 Aromatic-L-amino-acid/ 100.0 9.4E-39 2E-43 279.9 14.3 196 2-205 273-475 (511)
4 TIGR03799 NOD_PanD_pyr putativ 100.0 3.2E-37 7E-42 283.1 15.8 182 2-195 303-519 (522)
5 PF00282 Pyridoxal_deC: Pyrido 100.0 5E-35 1.1E-39 259.4 11.7 141 2-148 232-373 (373)
6 TIGR03811 tyr_de_CO2_Ent tyros 100.0 7.1E-33 1.5E-37 257.1 17.4 186 10-204 362-605 (608)
7 KOG0629 Glutamate decarboxylas 100.0 5.6E-33 1.2E-37 241.6 6.4 194 2-201 291-509 (510)
8 TIGR01788 Glu-decarb-GAD gluta 100.0 3.3E-30 7.1E-35 232.3 16.4 184 2-202 230-430 (431)
9 COG0076 GadB Glutamate decarbo 100.0 3E-29 6.5E-34 227.1 16.0 191 2-207 245-455 (460)
10 PLN02263 serine decarboxylase 100.0 9.7E-28 2.1E-32 216.5 17.2 173 2-204 271-446 (470)
11 PLN03032 serine decarboxylase; 99.9 5.2E-26 1.1E-30 201.5 16.1 166 2-197 204-372 (374)
12 PRK02769 histidine decarboxyla 99.9 2.5E-24 5.4E-29 191.5 17.1 168 2-200 201-371 (380)
13 cd06450 DOPA_deC_like DOPA dec 99.8 1.5E-18 3.2E-23 151.3 10.4 149 2-197 186-344 (345)
14 KOG1383 Glutamate decarboxylas 99.8 2.2E-17 4.9E-22 145.9 15.0 191 2-209 257-454 (491)
15 COG0520 csdA Selenocysteine ly 99.7 2.5E-15 5.4E-20 134.8 16.2 167 20-200 213-404 (405)
16 PRK13520 L-tyrosine decarboxyl 99.6 3E-15 6.5E-20 131.7 14.3 159 19-199 208-369 (371)
17 TIGR03812 tyr_de_CO2_Arch tyro 99.6 9.9E-15 2.1E-19 128.6 13.7 156 20-197 214-372 (373)
18 TIGR01977 am_tr_V_EF2568 cyste 99.4 2.9E-12 6.2E-17 113.0 15.5 166 20-197 188-375 (376)
19 PRK04366 glycine dehydrogenase 99.4 2E-12 4.3E-17 118.6 13.8 174 18-206 258-453 (481)
20 TIGR03392 FeS_syn_CsdA cystein 99.4 2.1E-11 4.4E-16 108.8 15.1 166 21-201 209-395 (398)
21 TIGR01814 kynureninase kynuren 99.4 2.9E-11 6.3E-16 108.3 15.9 170 21-198 223-404 (406)
22 PLN02855 Bifunctional selenocy 99.4 3.3E-11 7.1E-16 108.5 16.3 168 21-202 225-419 (424)
23 PRK10874 cysteine sulfinate de 99.4 2.5E-11 5.4E-16 108.4 15.2 166 21-201 212-398 (401)
24 PRK09295 bifunctional cysteine 99.3 4E-11 8.7E-16 107.3 15.8 171 21-200 216-403 (406)
25 TIGR01979 sufS cysteine desulf 99.3 5.8E-11 1.2E-15 105.9 15.5 174 21-202 211-402 (403)
26 PLN02724 Molybdenum cofactor s 99.3 1.5E-11 3.3E-16 119.1 12.5 171 21-199 252-486 (805)
27 PRK05367 glycine dehydrogenase 99.3 2.5E-11 5.5E-16 118.7 14.0 167 18-204 690-878 (954)
28 TIGR00461 gcvP glycine dehydro 99.3 6.9E-11 1.5E-15 114.6 16.6 169 18-204 678-870 (939)
29 PRK03080 phosphoserine aminotr 99.3 2.1E-11 4.5E-16 108.6 10.2 170 20-203 183-375 (378)
30 TIGR03403 nifS_epsilon cystein 99.2 4.4E-10 9.6E-15 99.7 16.6 159 21-203 192-377 (382)
31 TIGR03402 FeS_nifS cysteine de 99.2 4.7E-10 1E-14 99.4 15.9 158 21-202 188-373 (379)
32 PF00266 Aminotran_5: Aminotra 99.2 5.8E-11 1.3E-15 104.9 9.3 160 21-191 191-371 (371)
33 cd00613 GDC-P Glycine cleavage 99.2 8E-11 1.7E-15 104.7 9.9 102 93-195 291-398 (398)
34 PLN02651 cysteine desulfurase 99.2 3.4E-10 7.3E-15 100.0 13.4 147 21-189 190-364 (364)
35 cd06453 SufS_like Cysteine des 99.2 5.1E-10 1.1E-14 98.7 14.1 162 21-195 191-373 (373)
36 TIGR02006 IscS cysteine desulf 99.1 2.8E-09 6E-14 95.5 15.3 159 21-202 194-378 (402)
37 PRK05367 glycine dehydrogenase 99.1 2E-09 4.3E-14 105.6 13.8 164 18-196 254-437 (954)
38 TIGR01364 serC_1 phosphoserine 99.1 1.2E-09 2.5E-14 96.5 10.4 165 19-200 173-347 (349)
39 PTZ00094 serine hydroxymethylt 99.0 2.8E-09 6.1E-14 97.1 12.3 159 19-201 233-408 (452)
40 PLN02414 glycine dehydrogenase 99.0 6.4E-09 1.4E-13 102.0 13.6 161 20-198 284-466 (993)
41 TIGR01976 am_tr_V_VC1184 cyste 99.0 1.1E-08 2.4E-13 91.0 13.2 155 21-195 208-397 (397)
42 cd00611 PSAT_like Phosphoserin 98.9 3.7E-09 8E-14 93.4 9.4 160 22-198 184-353 (355)
43 TIGR03531 selenium_SpcS O-phos 98.9 5.2E-09 1.1E-13 95.0 10.5 108 2-138 243-356 (444)
44 PRK05355 3-phosphoserine/phosp 98.9 3.7E-09 8E-14 93.7 9.3 164 20-200 185-357 (360)
45 cd06451 AGAT_like Alanine-glyo 98.9 1E-08 2.2E-13 89.9 11.7 163 21-198 176-354 (356)
46 PLN02414 glycine dehydrogenase 98.9 4.3E-08 9.3E-13 96.3 15.6 172 18-204 716-910 (993)
47 TIGR02326 transamin_PhnW 2-ami 98.9 2.6E-08 5.6E-13 87.7 12.9 162 21-198 181-359 (363)
48 PRK00451 glycine dehydrogenase 98.9 1.6E-08 3.4E-13 91.8 11.1 174 18-198 252-445 (447)
49 PLN02409 serine--glyoxylate am 98.9 2.1E-08 4.6E-13 89.9 11.4 164 21-202 191-373 (401)
50 TIGR03301 PhnW-AepZ 2-aminoeth 98.9 4.6E-08 9.9E-13 85.3 12.9 162 21-198 177-354 (355)
51 PRK14012 cysteine desulfurase; 98.8 1.9E-07 4.2E-12 83.6 15.9 159 21-202 196-380 (404)
52 COG1104 NifS Cysteine sulfinat 98.8 2.5E-07 5.5E-12 81.9 15.8 155 22-204 194-380 (386)
53 PRK12566 glycine dehydrogenase 98.8 9.3E-08 2E-12 92.9 13.8 167 18-203 691-878 (954)
54 TIGR01366 serC_3 phosphoserine 98.8 3.2E-08 7E-13 87.7 9.8 169 19-201 173-360 (361)
55 PRK13479 2-aminoethylphosphona 98.8 1.3E-07 2.8E-12 83.4 12.4 166 21-202 183-364 (368)
56 PRK02948 cysteine desulfurase; 98.7 7.9E-07 1.7E-11 78.8 14.8 159 21-204 190-377 (381)
57 PLN02721 threonine aldolase 98.6 6.9E-07 1.5E-11 77.9 12.7 86 111-200 259-351 (353)
58 PRK13580 serine hydroxymethylt 98.6 5E-07 1.1E-11 82.8 11.8 157 18-202 273-446 (493)
59 cd06502 TA_like Low-specificit 98.5 1.3E-06 2.8E-11 75.7 11.2 145 20-197 185-337 (338)
60 PRK09331 Sep-tRNA:Cys-tRNA syn 98.4 8.7E-06 1.9E-10 72.7 15.0 158 21-201 210-381 (387)
61 cd06452 SepCysS Sep-tRNA:Cys-t 98.3 2.9E-05 6.4E-10 68.4 15.1 154 21-198 191-359 (361)
62 TIGR03235 DNA_S_dndA cysteine 98.3 1.1E-05 2.4E-10 70.8 11.8 120 21-160 190-314 (353)
63 PLN03226 serine hydroxymethylt 98.3 1.2E-05 2.5E-10 74.0 12.0 165 19-202 234-420 (475)
64 PLN02452 phosphoserine transam 98.2 7.4E-06 1.6E-10 72.9 9.7 159 23-201 192-363 (365)
65 cd00616 AHBA_syn 3-amino-5-hyd 98.2 1.6E-05 3.4E-10 69.3 10.9 92 104-196 226-352 (352)
66 TIGR02539 SepCysS Sep-tRNA:Cys 98.2 5.9E-05 1.3E-09 66.9 14.7 155 21-201 198-368 (370)
67 KOG1549 Cysteine desulfurase N 98.2 2.6E-05 5.6E-10 69.8 11.7 160 21-203 233-420 (428)
68 COG3844 Kynureninase [Amino ac 98.1 4.8E-05 1E-09 65.8 12.0 170 18-202 215-403 (407)
69 PRK07582 cystathionine gamma-l 98.1 2.2E-05 4.8E-10 69.8 10.1 145 21-197 183-365 (366)
70 cd00609 AAT_like Aspartate ami 98.1 2.4E-05 5.1E-10 67.5 10.0 151 18-196 191-349 (350)
71 PRK13034 serine hydroxymethylt 98.1 4.6E-05 9.9E-10 68.9 11.8 156 19-201 219-392 (416)
72 PRK07179 hypothetical protein; 98.1 2.6E-05 5.5E-10 70.0 10.0 151 20-202 240-399 (407)
73 TIGR00461 gcvP glycine dehydro 98.0 0.00015 3.2E-09 71.2 14.1 161 19-196 243-426 (939)
74 TIGR01822 2am3keto_CoA 2-amino 97.9 0.00011 2.4E-09 65.2 10.5 151 21-202 230-390 (393)
75 PRK12462 phosphoserine aminotr 97.8 0.00013 2.9E-09 64.8 10.0 166 19-201 186-362 (364)
76 TIGR01437 selA_rel uncharacter 97.8 0.00039 8.5E-09 61.7 12.9 148 21-198 199-362 (363)
77 TIGR01365 serC_2 phosphoserine 97.8 0.00023 4.9E-09 63.6 11.3 166 20-199 174-371 (374)
78 COG2008 GLY1 Threonine aldolas 97.8 0.00022 4.7E-09 62.4 10.3 149 19-199 188-341 (342)
79 COG0075 Serine-pyruvate aminot 97.7 0.00056 1.2E-08 61.0 12.1 172 21-204 183-366 (383)
80 PRK08861 cystathionine gamma-s 97.7 0.00039 8.3E-09 62.4 11.1 100 21-149 189-307 (388)
81 PLN02271 serine hydroxymethylt 97.7 0.00033 7.2E-09 65.2 10.4 174 19-200 349-539 (586)
82 TIGR02080 O_succ_thio_ly O-suc 97.7 0.00042 9.1E-09 62.0 10.3 100 21-149 187-305 (382)
83 PRK08045 cystathionine gamma-s 97.6 0.00048 1.1E-08 61.7 10.6 100 21-149 188-306 (386)
84 PRK00011 glyA serine hydroxyme 97.6 0.00066 1.4E-08 60.9 11.5 153 21-200 218-388 (416)
85 cd06454 KBL_like KBL_like; thi 97.6 0.00031 6.8E-09 61.0 9.1 89 108-198 252-348 (349)
86 cd00378 SHMT Serine-glycine hy 97.6 0.00058 1.3E-08 60.9 10.8 153 21-200 214-384 (402)
87 PRK07269 cystathionine gamma-s 97.6 0.00034 7.3E-09 62.2 9.0 101 20-149 186-289 (364)
88 PRK08114 cystathionine beta-ly 97.6 0.00069 1.5E-08 60.9 10.8 100 21-150 200-318 (395)
89 cd00614 CGS_like CGS_like: Cys 97.6 0.00037 8E-09 61.9 9.0 143 21-198 176-367 (369)
90 PRK06767 methionine gamma-lyas 97.6 0.00039 8.5E-09 62.2 8.9 101 20-149 196-309 (386)
91 PRK08064 cystathionine beta-ly 97.6 0.00081 1.8E-08 60.3 10.9 145 21-197 189-382 (390)
92 PRK05937 8-amino-7-oxononanoat 97.5 0.00082 1.8E-08 59.6 10.5 82 112-202 267-351 (370)
93 PLN02509 cystathionine beta-ly 97.5 0.0012 2.5E-08 60.7 10.8 99 20-147 267-384 (464)
94 PRK06434 cystathionine gamma-l 97.4 0.001 2.2E-08 59.6 9.7 101 20-149 196-309 (384)
95 TIGR01324 cysta_beta_ly_B cyst 97.3 0.0023 5.1E-08 57.1 10.6 102 20-151 185-305 (377)
96 PRK06176 cystathionine gamma-s 97.3 0.0015 3.3E-08 58.4 9.4 101 20-149 184-303 (380)
97 PRK05958 8-amino-7-oxononanoat 97.3 0.0019 4E-08 56.9 9.8 99 95-198 278-384 (385)
98 PRK05968 hypothetical protein; 97.3 0.0039 8.4E-08 55.9 11.8 99 21-149 198-311 (389)
99 TIGR01329 cysta_beta_ly_E cyst 97.3 0.0017 3.7E-08 58.0 9.2 99 21-148 182-299 (378)
100 PRK05613 O-acetylhomoserine am 97.2 0.0031 6.8E-08 57.5 10.8 55 93-149 288-360 (437)
101 PRK09028 cystathionine beta-ly 97.2 0.0033 7.2E-08 56.6 10.7 101 21-151 197-316 (394)
102 PRK07811 cystathionine gamma-s 97.2 0.0037 8E-08 56.0 10.8 100 21-149 197-315 (388)
103 PLN02822 serine palmitoyltrans 97.2 0.0089 1.9E-07 55.1 13.5 95 109-204 367-480 (481)
104 PRK07504 O-succinylhomoserine 97.2 0.0036 7.8E-08 56.3 10.6 102 21-150 201-320 (398)
105 TIGR01328 met_gam_lyase methio 97.2 0.0031 6.6E-08 56.6 9.8 102 20-149 194-314 (391)
106 PRK07671 cystathionine beta-ly 97.2 0.0034 7.3E-08 56.1 9.9 98 21-147 185-301 (377)
107 PRK08574 cystathionine gamma-s 97.2 0.0022 4.8E-08 57.4 8.7 101 20-149 187-308 (385)
108 PF02347 GDC-P: Glycine cleava 97.1 0.005 1.1E-07 55.8 10.6 160 18-195 245-429 (429)
109 PRK08776 cystathionine gamma-s 97.1 0.0082 1.8E-07 54.2 12.0 100 21-149 196-314 (405)
110 PRK06939 2-amino-3-ketobutyrat 97.1 0.0053 1.2E-07 54.3 10.5 151 21-202 234-394 (397)
111 PRK07050 cystathionine beta-ly 97.0 0.0079 1.7E-07 54.1 10.7 148 21-202 201-392 (394)
112 PRK08249 cystathionine gamma-s 97.0 0.0084 1.8E-07 54.0 10.8 101 20-149 199-317 (398)
113 KOG3846 L-kynurenine hydrolase 97.0 0.028 6.1E-07 48.8 13.2 174 21-204 266-464 (465)
114 PRK07812 O-acetylhomoserine am 97.0 0.01 2.2E-07 54.2 11.3 55 94-150 284-356 (436)
115 PRK13238 tnaA tryptophanase/L- 96.9 0.024 5.2E-07 52.0 13.3 155 20-199 249-431 (460)
116 PLN03227 serine palmitoyltrans 96.9 0.022 4.8E-07 51.1 12.7 100 109-210 261-391 (392)
117 PRK08248 O-acetylhomoserine am 96.9 0.016 3.4E-07 52.8 11.8 56 93-150 279-352 (431)
118 PRK08134 O-acetylhomoserine am 96.9 0.023 4.9E-07 51.8 12.8 54 94-149 280-351 (433)
119 PRK06084 O-acetylhomoserine am 96.9 0.02 4.4E-07 52.0 12.4 55 94-150 275-347 (425)
120 PRK06460 hypothetical protein; 96.9 0.013 2.8E-07 52.3 10.9 99 21-149 181-298 (376)
121 KOG2467 Glycine/serine hydroxy 96.9 0.033 7.1E-07 49.4 12.8 166 19-199 240-424 (477)
122 TIGR01141 hisC histidinol-phos 96.8 0.015 3.1E-07 50.7 10.5 85 107-196 258-346 (346)
123 PRK09064 5-aminolevulinate syn 96.8 0.013 2.9E-07 52.4 10.5 102 96-202 288-398 (407)
124 PRK08133 O-succinylhomoserine 96.8 0.01 2.3E-07 53.1 9.7 99 21-149 197-314 (390)
125 TIGR01325 O_suc_HS_sulf O-succ 96.8 0.012 2.6E-07 52.6 9.9 98 21-148 190-306 (380)
126 PRK13392 5-aminolevulinate syn 96.7 0.011 2.5E-07 52.9 9.3 89 111-202 301-398 (410)
127 TIGR00858 bioF 8-amino-7-oxono 96.7 0.013 2.8E-07 50.9 9.4 85 109-196 268-360 (360)
128 KOG0630 Predicted pyridoxal-de 96.7 0.003 6.5E-08 57.7 5.2 105 6-136 335-440 (838)
129 PLN02483 serine palmitoyltrans 96.6 0.039 8.4E-07 51.1 12.6 95 108-204 367-469 (489)
130 PRK03244 argD acetylornithine 96.6 0.047 1E-06 48.6 12.9 147 22-203 245-396 (398)
131 PRK05994 O-acetylhomoserine am 96.5 0.042 9.2E-07 49.9 11.7 55 93-149 278-350 (427)
132 TIGR03588 PseC UDP-4-keto-6-de 96.5 0.039 8.5E-07 48.9 11.2 93 105-198 254-379 (380)
133 PRK08247 cystathionine gamma-s 96.4 0.026 5.7E-07 50.1 9.9 101 20-149 186-289 (366)
134 PRK07810 O-succinylhomoserine 96.4 0.018 4E-07 51.9 8.8 100 21-149 206-324 (403)
135 PF01053 Cys_Met_Meta_PP: Cys/ 96.4 0.023 4.9E-07 51.1 9.1 103 21-151 192-313 (386)
136 PRK05964 adenosylmethionine--8 96.4 0.042 9.1E-07 49.7 10.9 97 98-202 318-423 (423)
137 PRK06234 methionine gamma-lyas 96.3 0.036 7.8E-07 49.9 10.0 102 21-150 202-322 (400)
138 PRK10534 L-threonine aldolase; 96.3 0.042 9.1E-07 47.6 9.9 82 110-199 247-331 (333)
139 PRK07503 methionine gamma-lyas 96.2 0.082 1.8E-06 47.6 12.0 101 21-149 201-320 (403)
140 TIGR01821 5aminolev_synth 5-am 96.2 0.033 7.2E-07 49.8 9.5 88 112-202 301-397 (402)
141 PRK13237 tyrosine phenol-lyase 96.1 0.026 5.7E-07 51.7 8.1 158 20-201 249-433 (460)
142 PRK13393 5-aminolevulinate syn 96.1 0.048 1E-06 48.8 9.7 87 113-202 302-397 (406)
143 KOG2862 Alanine-glyoxylate ami 96.0 0.14 3E-06 44.6 11.5 165 21-200 195-381 (385)
144 PRK06108 aspartate aminotransf 96.0 0.08 1.7E-06 46.7 10.5 92 104-199 280-380 (382)
145 PRK04311 selenocysteine syntha 95.9 0.14 3E-06 47.2 11.7 151 20-199 282-462 (464)
146 TIGR00707 argD acetylornithine 95.8 0.13 2.8E-06 45.3 11.1 142 22-198 232-378 (379)
147 COG1003 GcvP Glycine cleavage 95.8 0.35 7.5E-06 43.9 13.5 174 17-206 253-452 (496)
148 PRK07908 hypothetical protein; 95.8 0.12 2.6E-06 45.2 10.7 88 106-199 253-345 (349)
149 PF00464 SHMT: Serine hydroxym 95.8 0.036 7.7E-07 50.0 7.3 162 19-195 220-399 (399)
150 COG1103 Archaea-specific pyrid 95.7 0.083 1.8E-06 45.2 8.6 158 20-201 207-380 (382)
151 TIGR01825 gly_Cac_T_rel pyrido 95.7 0.11 2.3E-06 45.9 10.0 88 111-201 286-381 (385)
152 COG0403 GcvP Glycine cleavage 95.6 0.14 3E-06 46.2 10.4 167 17-198 258-447 (450)
153 COG0112 GlyA Glycine/serine hy 95.6 0.092 2E-06 46.9 9.1 159 18-201 216-390 (413)
154 cd00610 OAT_like Acetyl ornith 95.6 0.22 4.7E-06 44.4 11.8 145 22-198 253-412 (413)
155 COG0156 BioF 7-keto-8-aminopel 95.4 0.15 3.2E-06 45.9 9.8 148 20-198 231-387 (388)
156 TIGR02618 tyr_phenol_ly tyrosi 95.3 0.065 1.4E-06 49.0 7.4 159 19-201 241-426 (450)
157 PTZ00125 ornithine aminotransf 95.3 0.71 1.5E-05 41.0 14.0 146 22-202 240-396 (400)
158 TIGR00474 selA seryl-tRNA(sec) 95.2 0.16 3.5E-06 46.7 9.6 27 20-47 277-303 (454)
159 KOG1368 Threonine aldolase [Am 95.2 0.11 2.5E-06 44.9 8.0 146 19-197 213-364 (384)
160 COG2873 MET17 O-acetylhomoseri 95.0 0.14 3E-06 45.6 8.2 50 102-151 284-351 (426)
161 COG1932 SerC Phosphoserine ami 94.9 0.13 2.8E-06 45.5 7.7 163 18-201 187-363 (365)
162 PRK00854 rocD ornithine--oxo-a 94.9 1 2.2E-05 40.1 13.8 84 111-199 309-399 (401)
163 PRK09264 diaminobutyrate--2-ox 94.7 1.2 2.5E-05 40.5 13.7 106 98-209 309-424 (425)
164 cd00615 Orn_deC_like Ornithine 94.6 0.016 3.5E-07 49.7 1.5 28 20-47 209-236 (294)
165 TIGR02407 ectoine_ectB diamino 94.6 0.66 1.4E-05 41.9 12.0 148 18-200 253-411 (412)
166 PRK01688 histidinol-phosphate 94.6 0.2 4.4E-06 43.9 8.4 86 105-195 261-350 (351)
167 PRK08363 alanine aminotransfer 94.4 1.4 3.1E-05 39.1 13.6 93 105-201 291-394 (398)
168 PRK04635 histidinol-phosphate 94.4 0.36 7.8E-06 42.3 9.5 89 104-198 261-352 (354)
169 COG0626 MetC Cystathionine bet 94.3 0.3 6.5E-06 44.0 9.0 99 94-201 249-394 (396)
170 PRK08361 aspartate aminotransf 94.3 0.56 1.2E-05 41.7 10.8 90 107-200 290-389 (391)
171 PRK02731 histidinol-phosphate 94.2 0.72 1.6E-05 40.4 11.2 86 108-199 274-364 (367)
172 PF01276 OKR_DC_1: Orn/Lys/Arg 94.0 0.29 6.2E-06 44.5 8.2 123 1-150 204-342 (417)
173 PRK12566 glycine dehydrogenase 94.0 0.58 1.3E-05 46.6 10.7 163 17-196 255-439 (954)
174 PRK05764 aspartate aminotransf 93.9 1.1 2.3E-05 39.8 11.6 92 106-201 288-391 (393)
175 PRK04073 rocD ornithine--oxo-a 93.6 0.5 1.1E-05 42.2 9.1 92 99-198 299-394 (396)
176 PRK15029 arginine decarboxylas 93.6 0.88 1.9E-05 44.4 11.2 46 1-47 348-402 (755)
177 PRK07049 methionine gamma-lyas 93.6 0.63 1.4E-05 42.3 9.7 99 21-149 231-350 (427)
178 PLN02955 8-amino-7-oxononanoat 93.4 0.66 1.4E-05 42.9 9.5 83 112-203 373-463 (476)
179 cd00617 Tnase_like Tryptophana 93.1 2.5 5.3E-05 38.6 12.8 156 20-201 224-408 (431)
180 PRK08056 threonine-phosphate d 93.0 2.4 5.1E-05 37.2 12.2 142 23-198 204-352 (356)
181 PRK05967 cystathionine beta-ly 93.0 0.65 1.4E-05 41.9 8.7 56 93-150 246-318 (395)
182 PRK13578 ornithine decarboxyla 93.0 0.73 1.6E-05 44.7 9.4 48 1-48 318-372 (720)
183 PRK04870 histidinol-phosphate 92.9 0.83 1.8E-05 40.0 9.2 86 107-198 265-355 (356)
184 PRK02936 argD acetylornithine 92.8 0.72 1.6E-05 40.7 8.7 82 112-198 289-376 (377)
185 PRK11658 UDP-4-amino-4-deoxy-L 92.5 2.1 4.5E-05 38.1 11.3 102 97-199 242-377 (379)
186 PRK06702 O-acetylhomoserine am 92.2 0.64 1.4E-05 42.5 7.7 56 92-149 275-348 (432)
187 PRK06225 aspartate aminotransf 92.2 2.5 5.3E-05 37.3 11.3 84 117-203 285-378 (380)
188 PRK05387 histidinol-phosphate 91.9 1.9 4.2E-05 37.4 10.2 88 106-199 260-351 (353)
189 PRK05769 4-aminobutyrate amino 91.8 3.1 6.8E-05 37.9 11.8 99 96-202 329-440 (441)
190 PRK15399 lysine decarboxylase 91.5 2.9 6.3E-05 40.6 11.6 47 1-47 331-383 (713)
191 KOG1359 Glycine C-acetyltransf 91.5 2.6 5.6E-05 36.7 10.0 157 14-202 246-413 (417)
192 TIGR01885 Orn_aminotrans ornit 91.2 2.2 4.8E-05 38.0 10.1 95 96-198 296-399 (401)
193 PRK02627 acetylornithine amino 91.1 3.6 7.8E-05 36.3 11.2 84 114-202 306-395 (396)
194 TIGR03246 arg_catab_astC succi 91.0 3.1 6.8E-05 37.2 10.8 99 97-202 289-396 (397)
195 PRK12381 bifunctional succinyl 91.0 1.7 3.8E-05 38.9 9.2 100 99-205 295-403 (406)
196 PRK14807 histidinol-phosphate 91.0 3.4 7.3E-05 36.1 10.8 92 101-198 254-349 (351)
197 PRK04260 acetylornithine amino 90.9 4.3 9.3E-05 35.8 11.5 98 96-198 274-374 (375)
198 PRK03715 argD acetylornithine 90.9 8.2 0.00018 34.6 13.4 147 21-202 240-394 (395)
199 PRK05939 hypothetical protein; 90.8 0.85 1.8E-05 41.1 7.0 54 94-149 251-321 (397)
200 PRK03158 histidinol-phosphate 90.8 3 6.4E-05 36.4 10.3 85 108-198 271-358 (359)
201 TIGR01264 tyr_amTase_E tyrosin 90.5 2.7 5.8E-05 37.4 9.9 93 106-201 296-399 (401)
202 PRK01278 argD acetylornithine 90.3 3.8 8.2E-05 36.3 10.6 31 170-201 358-388 (389)
203 PRK06290 aspartate aminotransf 90.2 1.4 3E-05 39.8 7.8 91 109-202 303-406 (410)
204 PRK06425 histidinol-phosphate 90.1 2.4 5.3E-05 36.7 9.1 83 110-198 243-330 (332)
205 PLN02242 methionine gamma-lyas 89.9 5.6 0.00012 36.1 11.5 102 21-149 213-335 (418)
206 PRK00950 histidinol-phosphate 89.8 4 8.7E-05 35.5 10.3 82 108-198 272-359 (361)
207 PLN03026 histidinol-phosphate 89.7 2.5 5.5E-05 37.5 9.0 86 108-198 289-379 (380)
208 PRK06358 threonine-phosphate d 89.7 5.2 0.00011 35.1 10.9 84 109-198 264-352 (354)
209 TIGR01265 tyr_nico_aTase tyros 89.6 5 0.00011 35.8 10.9 90 108-200 300-400 (403)
210 PRK06173 adenosylmethionine--8 89.6 3.8 8.3E-05 37.3 10.2 104 94-204 320-428 (429)
211 PRK04781 histidinol-phosphate 89.6 3.4 7.3E-05 36.4 9.6 88 106-198 269-360 (364)
212 PRK15400 lysine decarboxylase 89.6 1.7 3.7E-05 42.2 8.2 111 1-137 331-456 (714)
213 PRK09105 putative aminotransfe 89.3 2.2 4.8E-05 37.7 8.4 85 108-199 281-368 (370)
214 PRK06207 aspartate aminotransf 89.0 6.2 0.00013 35.3 11.1 92 107-201 302-402 (405)
215 TIGR03576 pyridox_MJ0158 pyrid 89.0 5.6 0.00012 35.0 10.6 142 22-197 195-343 (346)
216 PRK11522 putrescine--2-oxoglut 89.0 6.1 0.00013 36.3 11.1 106 95-204 342-454 (459)
217 PRK06541 hypothetical protein; 88.9 4.6 0.0001 37.1 10.3 103 98-204 337-458 (460)
218 TIGR02617 tnaA_trp_ase tryptop 88.5 1.3 2.9E-05 40.6 6.3 155 20-201 255-441 (467)
219 COG0079 HisC Histidinol-phosph 88.4 4.4 9.5E-05 36.0 9.5 90 106-200 259-353 (356)
220 PRK02610 histidinol-phosphate 88.3 7.7 0.00017 34.2 11.1 87 106-200 281-370 (374)
221 PRK05957 aspartate aminotransf 88.0 13 0.00027 33.0 12.3 96 106-203 283-387 (389)
222 PRK07682 hypothetical protein; 87.9 10 0.00022 33.3 11.6 93 104-201 274-376 (378)
223 TIGR01140 L_thr_O3P_dcar L-thr 87.7 4.6 0.0001 35.0 9.1 137 23-195 186-329 (330)
224 PLN02624 ornithine-delta-amino 87.6 9.1 0.0002 35.3 11.4 98 99-204 337-447 (474)
225 PRK03317 histidinol-phosphate 87.6 6.5 0.00014 34.5 10.1 87 106-200 275-363 (368)
226 PRK08297 L-lysine aminotransfe 87.3 5.8 0.00013 36.2 9.9 96 99-202 338-442 (443)
227 PRK06938 diaminobutyrate--2-ox 86.8 8.1 0.00018 35.6 10.6 151 22-204 293-463 (464)
228 PRK08153 histidinol-phosphate 86.8 6.5 0.00014 34.7 9.7 87 108-200 272-364 (369)
229 PRK13360 omega amino acid--pyr 86.8 4.6 0.0001 36.9 8.9 99 96-202 332-441 (442)
230 PLN00145 tyrosine/nicotianamin 86.7 7.6 0.00017 35.2 10.3 93 106-201 320-424 (430)
231 PRK04612 argD acetylornithine 86.7 5.1 0.00011 36.2 9.0 102 96-204 296-406 (408)
232 COG4992 ArgD Ornithine/acetylo 86.6 14 0.00029 33.5 11.4 101 98-204 295-401 (404)
233 PTZ00433 tyrosine aminotransfe 86.5 6.8 0.00015 35.1 9.8 91 108-201 307-408 (412)
234 PRK07681 aspartate aminotransf 86.5 4.6 0.0001 35.9 8.7 89 107-199 290-386 (399)
235 PRK07568 aspartate aminotransf 86.5 13 0.00029 32.7 11.6 95 104-202 283-393 (397)
236 KOG2040 Glycine dehydrogenase 86.4 9.1 0.0002 36.9 10.5 168 17-203 729-920 (1001)
237 PRK09221 beta alanine--pyruvat 86.0 9.4 0.0002 34.9 10.5 98 98-202 337-444 (445)
238 KOG1360 5-aminolevulinate synt 86.0 8.5 0.00018 35.0 9.7 95 104-202 422-525 (570)
239 PTZ00377 alanine aminotransfer 85.9 12 0.00025 34.4 11.2 87 116-206 372-480 (481)
240 TIGR03251 LAT_fam L-lysine 6-t 85.8 9 0.0002 34.8 10.2 93 98-197 330-430 (431)
241 PF00155 Aminotran_1_2: Aminot 85.5 3 6.5E-05 36.2 6.8 85 107-195 273-363 (363)
242 TIGR00508 bioA adenosylmethion 85.5 6.3 0.00014 35.8 9.1 98 95-200 322-425 (427)
243 PRK06107 aspartate aminotransf 85.3 15 0.00032 32.8 11.3 95 104-202 289-401 (402)
244 KOG1357 Serine palmitoyltransf 85.1 3.9 8.4E-05 37.5 7.3 96 104-203 399-504 (519)
245 TIGR00709 dat 2,4-diaminobutyr 85.1 14 0.0003 33.7 11.1 151 22-205 268-439 (442)
246 PRK06959 putative threonine-ph 85.0 16 0.00034 31.9 11.2 88 109-204 248-336 (339)
247 KOG2790 Phosphoserine aminotra 84.8 8.7 0.00019 33.4 8.9 165 19-200 193-367 (370)
248 PRK06931 diaminobutyrate--2-ox 84.7 8.9 0.00019 35.2 9.7 33 171-204 425-457 (459)
249 PF05889 SLA_LP_auto_ag: Solub 84.5 13 0.00028 33.5 10.2 151 20-199 212-388 (389)
250 PRK09265 aminotransferase AlaT 84.4 13 0.00029 33.0 10.6 83 114-200 305-400 (404)
251 PRK13355 bifunctional HTH-doma 84.1 16 0.00035 33.8 11.4 83 114-200 418-513 (517)
252 PRK06917 hypothetical protein; 84.0 12 0.00025 34.3 10.2 33 171-204 408-440 (447)
253 TIGR01326 OAH_OAS_sulfhy OAH/O 84.0 3.5 7.5E-05 37.3 6.7 55 94-150 272-344 (418)
254 PLN02187 rooty/superroot1 83.6 24 0.00051 32.4 12.0 96 107-205 335-442 (462)
255 PRK08175 aminotransferase; Val 83.3 9.4 0.0002 33.9 9.1 89 108-200 289-388 (395)
256 PRK15481 transcriptional regul 83.2 6.9 0.00015 35.3 8.3 89 108-199 335-429 (431)
257 PRK08117 4-aminobutyrate amino 81.8 20 0.00042 32.5 10.7 32 171-203 400-431 (433)
258 COG3033 TnaA Tryptophanase [Am 81.7 29 0.00064 31.2 11.1 158 19-201 256-444 (471)
259 PRK07505 hypothetical protein; 81.6 12 0.00026 33.3 9.2 30 171-201 370-399 (402)
260 PLN00143 tyrosine/nicotianamin 81.5 16 0.00035 32.7 10.0 93 106-201 300-404 (409)
261 PRK05166 histidinol-phosphate 81.3 12 0.00027 32.8 9.0 87 106-198 279-368 (371)
262 PRK05639 4-aminobutyrate amino 81.2 14 0.0003 33.9 9.6 103 98-204 332-446 (457)
263 PRK05093 argD bifunctional N-s 81.0 24 0.00053 31.4 10.9 86 113-202 307-401 (403)
264 PRK03321 putative aminotransfe 80.6 22 0.00047 30.9 10.3 85 105-198 262-348 (352)
265 PRK06058 4-aminobutyrate amino 80.5 9.7 0.00021 34.7 8.3 99 98-201 330-442 (443)
266 PRK07777 aminotransferase; Val 80.1 41 0.00089 29.6 12.3 90 105-199 281-384 (387)
267 PLN00144 acetylornithine trans 80.0 42 0.0009 29.9 12.0 99 96-201 276-380 (382)
268 PRK07865 N-succinyldiaminopime 79.6 14 0.0003 32.3 8.8 83 108-196 274-363 (364)
269 PRK07483 hypothetical protein; 79.5 23 0.0005 32.3 10.4 33 172-205 409-441 (443)
270 PRK01533 histidinol-phosphate 79.0 22 0.00048 31.3 9.9 83 109-201 272-355 (366)
271 TIGR03542 DAPAT_plant LL-diami 78.8 20 0.00044 31.9 9.7 86 109-198 308-401 (402)
272 PRK07678 aminotransferase; Val 77.7 41 0.00088 30.8 11.4 31 171-202 420-450 (451)
273 PRK07986 adenosylmethionine--8 77.6 14 0.00031 33.6 8.4 98 95-199 319-421 (428)
274 PRK08068 transaminase; Reviewe 77.6 19 0.00041 31.8 9.1 87 106-197 290-385 (389)
275 KOG1404 Alanine-glyoxylate ami 76.9 31 0.00068 31.2 9.9 163 2-195 244-432 (442)
276 KOG2040 Glycine dehydrogenase 76.7 12 0.00025 36.2 7.5 94 102-198 387-480 (1001)
277 COG0399 WecE Predicted pyridox 76.7 40 0.00087 30.3 10.7 168 18-200 171-372 (374)
278 PLN02231 alanine transaminase 76.5 29 0.00063 32.6 10.3 91 113-207 421-533 (534)
279 COG0436 Aspartate/tyrosine/aro 76.4 33 0.00072 30.8 10.3 92 107-201 290-391 (393)
280 PRK06148 hypothetical protein; 76.4 18 0.0004 36.7 9.4 170 2-203 816-1012(1013)
281 PRK07324 transaminase; Validat 76.4 48 0.001 29.2 11.3 81 116-200 282-369 (373)
282 TIGR03540 DapC_direct LL-diami 76.2 26 0.00056 30.8 9.6 87 105-196 286-381 (383)
283 PRK07309 aromatic amino acid a 76.2 55 0.0012 28.9 11.9 84 114-202 295-389 (391)
284 PRK08912 hypothetical protein; 76.0 17 0.00037 32.1 8.3 85 109-198 285-383 (387)
285 PRK05965 hypothetical protein; 76.0 30 0.00066 31.7 10.1 103 96-204 332-450 (459)
286 KOG1358 Serine palmitoyltransf 75.9 7.8 0.00017 35.0 5.9 85 117-202 363-466 (467)
287 PRK06149 hypothetical protein; 75.9 57 0.0012 33.0 12.8 168 2-201 776-970 (972)
288 PLN02760 4-aminobutyrate:pyruv 75.8 30 0.00064 32.3 10.1 98 98-202 379-492 (504)
289 PRK05664 threonine-phosphate d 75.8 22 0.00049 30.7 8.9 85 109-201 242-328 (330)
290 TIGR03539 DapC_actino succinyl 75.8 18 0.0004 31.6 8.4 83 108-195 268-356 (357)
291 PRK07366 succinyldiaminopimela 75.7 20 0.00043 31.6 8.7 87 108-198 291-387 (388)
292 PRK07590 L,L-diaminopimelate a 75.4 26 0.00057 31.2 9.4 87 107-197 313-407 (409)
293 PRK06777 4-aminobutyrate amino 75.0 41 0.00089 30.4 10.6 95 99-199 310-419 (421)
294 PRK06105 aminotransferase; Pro 74.7 31 0.00066 31.7 9.8 103 96-205 335-453 (460)
295 PRK09440 avtA valine--pyruvate 74.3 42 0.00092 29.8 10.5 31 172-205 385-415 (416)
296 PLN02656 tyrosine transaminase 74.1 41 0.00088 30.1 10.3 92 107-201 300-403 (409)
297 PRK07392 threonine-phosphate d 74.0 49 0.0011 28.8 10.7 79 115-198 272-356 (360)
298 PRK08636 aspartate aminotransf 73.8 36 0.00077 30.3 9.9 90 108-201 300-400 (403)
299 COG0001 HemL Glutamate-1-semia 73.8 39 0.00084 31.0 9.9 99 98-203 313-430 (432)
300 TIGR00699 GABAtrns_euk 4-amino 73.8 19 0.00042 33.2 8.2 92 99-198 361-463 (464)
301 PRK09276 LL-diaminopimelate am 73.4 22 0.00048 31.3 8.4 85 108-197 291-384 (385)
302 PRK07030 adenosylmethionine--8 73.2 29 0.00064 31.9 9.3 100 98-204 334-449 (466)
303 PRK06918 4-aminobutyrate amino 72.4 65 0.0014 29.3 11.4 32 172-204 415-446 (451)
304 PRK06348 aspartate aminotransf 72.4 31 0.00067 30.4 9.1 80 115-198 293-382 (384)
305 PLN00175 aminotransferase fami 72.3 41 0.0009 30.1 9.9 88 107-199 310-411 (413)
306 PRK07550 hypothetical protein; 72.0 26 0.00056 30.9 8.5 84 112-198 292-384 (386)
307 PRK05630 adenosylmethionine--8 71.9 27 0.00059 31.7 8.7 98 96-200 317-419 (422)
308 KOG0053 Cystathionine beta-lya 71.0 35 0.00077 31.0 8.9 90 17-135 208-300 (409)
309 PRK06836 aspartate aminotransf 70.9 40 0.00087 29.9 9.5 80 116-200 306-390 (394)
310 PRK14808 histidinol-phosphate 70.9 35 0.00075 29.6 8.9 83 106-197 249-333 (335)
311 TIGR03372 putres_am_tran putre 70.5 51 0.0011 30.2 10.2 96 97-198 337-441 (442)
312 PRK06855 aminotransferase; Val 70.4 39 0.00085 30.5 9.4 93 108-203 304-431 (433)
313 COG0160 GabT 4-aminobutyrate a 69.4 38 0.00082 31.2 8.9 104 94-202 328-446 (447)
314 TIGR00700 GABAtrnsam 4-aminobu 68.2 83 0.0018 28.3 11.0 95 99-199 309-418 (420)
315 COG1448 TyrB Aspartate/tyrosin 67.5 36 0.00079 30.6 8.1 87 100-198 303-395 (396)
316 PRK07481 hypothetical protein; 67.1 45 0.00097 30.5 9.1 101 95-202 329-446 (449)
317 COG1982 LdcC Arginine/lysine/o 66.9 5 0.00011 37.8 2.8 99 20-139 221-322 (557)
318 PRK07480 putative aminotransfe 66.7 58 0.0013 29.8 9.8 34 172-206 420-453 (456)
319 PRK06943 adenosylmethionine--8 65.2 92 0.002 28.5 10.8 33 172-205 418-450 (453)
320 PRK08088 4-aminobutyrate amino 65.1 1E+02 0.0022 27.7 11.0 30 171-201 394-423 (425)
321 PRK06082 4-aminobutyrate amino 65.1 74 0.0016 29.2 10.1 98 98-202 340-452 (459)
322 PRK07036 hypothetical protein; 64.8 49 0.0011 30.5 8.9 100 98-204 340-455 (466)
323 TIGR03537 DapC succinyldiamino 63.9 47 0.001 28.8 8.4 85 108-197 257-349 (350)
324 PLN02607 1-aminocyclopropane-1 63.2 55 0.0012 29.9 8.9 81 116-200 341-436 (447)
325 PRK05942 aspartate aminotransf 62.7 82 0.0018 27.8 9.8 86 106-196 293-387 (394)
326 PRK08360 4-aminobutyrate amino 62.6 1.2E+02 0.0027 27.6 11.5 33 172-205 398-430 (443)
327 PRK07495 4-aminobutyrate amino 62.5 1.2E+02 0.0026 27.4 11.9 101 98-203 309-423 (425)
328 KOG0630 Predicted pyridoxal-de 61.8 50 0.0011 31.0 8.1 93 111-206 581-699 (838)
329 PRK08593 4-aminobutyrate amino 61.2 1.3E+02 0.0029 27.4 12.0 32 172-204 401-432 (445)
330 PRK08637 hypothetical protein; 61.1 66 0.0014 28.4 8.9 76 120-201 303-386 (388)
331 TIGR03538 DapC_gpp succinyldia 60.8 1.1E+02 0.0023 27.1 10.2 85 108-197 295-391 (393)
332 KOG3843 Predicted serine hydro 60.3 4.7 0.0001 34.6 1.3 83 19-128 213-295 (432)
333 COG1168 MalY Bifunctional PLP- 59.5 1.4E+02 0.0029 27.0 10.8 94 102-198 280-383 (388)
334 PRK09147 succinyldiaminopimela 59.4 58 0.0013 28.8 8.2 86 108-198 296-393 (396)
335 PRK06916 adenosylmethionine--8 59.0 79 0.0017 29.0 9.2 98 98-202 343-456 (460)
336 PLN02450 1-aminocyclopropane-1 57.8 62 0.0013 29.7 8.3 92 108-203 326-432 (468)
337 PRK09082 methionine aminotrans 57.0 88 0.0019 27.6 9.0 87 106-197 286-385 (386)
338 PRK12414 putative aminotransfe 56.1 1.1E+02 0.0024 26.9 9.4 82 111-197 289-383 (384)
339 KOG0634 Aromatic amino acid am 55.9 1.7E+02 0.0037 27.0 12.6 23 93-115 332-354 (472)
340 PRK14809 histidinol-phosphate 55.6 1.4E+02 0.003 25.9 10.1 80 110-199 273-355 (357)
341 KOG0259 Tyrosine aminotransfer 53.9 84 0.0018 28.5 8.0 97 106-205 329-437 (447)
342 PRK09148 aminotransferase; Val 53.3 1.2E+02 0.0025 27.1 9.2 89 108-201 290-390 (405)
343 PRK07482 hypothetical protein; 53.1 1.8E+02 0.004 26.6 11.8 32 172-204 426-457 (461)
344 PRK06062 hypothetical protein; 50.6 2E+02 0.0043 26.3 12.1 31 172-203 417-447 (451)
345 PRK07683 aminotransferase A; V 50.2 1.8E+02 0.0039 25.6 11.2 91 104-199 281-381 (387)
346 PRK07337 aminotransferase; Val 49.9 1.2E+02 0.0027 26.6 8.7 87 107-197 284-385 (388)
347 PLN02672 methionine S-methyltr 49.1 1.6E+02 0.0034 30.5 10.0 87 108-199 968-1078(1082)
348 PF07131 DUF1382: Protein of u 46.8 40 0.00087 21.9 3.6 29 174-203 24-52 (61)
349 PLN02376 1-aminocyclopropane-1 46.8 1.6E+02 0.0034 27.3 9.2 82 116-201 341-438 (496)
350 COG0161 BioA Adenosylmethionin 45.1 2.5E+02 0.0055 26.0 9.9 101 98-205 332-447 (449)
351 PRK07046 aminotransferase; Val 44.9 1.8E+02 0.0038 26.7 9.1 28 173-203 425-452 (453)
352 PRK00062 glutamate-1-semialdeh 43.7 2E+02 0.0044 25.8 9.3 27 173-202 399-425 (426)
353 PF01041 DegT_DnrJ_EryC1: DegT 39.3 1.4E+02 0.0031 26.0 7.4 91 105-196 236-363 (363)
354 PRK04013 argD acetylornithine/ 37.4 53 0.0011 29.2 4.3 33 170-203 330-362 (364)
355 PTZ00376 aspartate aminotransf 36.0 2E+02 0.0044 25.4 7.9 79 110-200 318-402 (404)
356 PRK08742 adenosylmethionine--8 35.5 3.6E+02 0.0078 24.9 11.9 31 172-203 439-469 (472)
357 PLN02482 glutamate-1-semialdeh 34.1 2.6E+02 0.0057 25.8 8.4 22 180-201 452-473 (474)
358 PRK00615 glutamate-1-semialdeh 34.0 3.1E+02 0.0066 25.0 8.8 25 180-204 407-431 (433)
359 PRK09792 4-aminobutyrate trans 33.9 3.5E+02 0.0077 24.3 11.8 28 171-199 392-419 (421)
360 PRK12403 putative aminotransfe 33.0 3.9E+02 0.0084 24.5 13.8 31 173-204 425-455 (460)
361 PF03885 DUF327: Protein of un 33.0 23 0.00051 27.3 1.2 32 183-214 40-71 (147)
362 PLN02397 aspartate transaminas 31.5 3.1E+02 0.0067 24.6 8.4 79 108-199 334-419 (423)
363 PRK03967 histidinol-phosphate 30.7 3.5E+02 0.0076 23.2 8.7 79 107-199 252-332 (337)
364 TIGR02379 ECA_wecE TDP-4-keto- 30.5 3.8E+02 0.0083 23.7 11.9 92 106-198 248-374 (376)
365 TIGR00713 hemL glutamate-1-sem 27.1 4.5E+02 0.0097 23.4 9.7 27 172-201 396-422 (423)
366 PRK11633 cell division protein 26.5 72 0.0016 26.6 3.1 29 168-198 185-213 (226)
367 PRK06209 glutamate-1-semialdeh 26.4 2.8E+02 0.0062 25.0 7.2 24 181-204 385-408 (431)
368 COG1167 ARO8 Transcriptional r 24.4 5.5E+02 0.012 23.5 10.6 85 117-203 361-457 (459)
369 PF05910 DUF868: Plant protein 24.3 55 0.0012 28.1 2.0 40 10-49 189-237 (274)
370 PRK08960 hypothetical protein; 23.4 5E+02 0.011 22.7 10.3 86 108-197 287-383 (387)
371 PRK15407 lipopolysaccharide bi 22.9 5.8E+02 0.013 23.2 12.6 37 96-132 295-331 (438)
372 PRK05839 hypothetical protein; 22.5 4.4E+02 0.0095 23.0 7.6 26 171-199 347-372 (374)
373 PF03841 SelA: L-seryl-tRNA se 21.3 1.1E+02 0.0023 27.6 3.3 28 20-48 202-229 (367)
374 PF01212 Beta_elim_lyase: Beta 21.0 98 0.0021 26.6 3.0 99 20-142 184-282 (290)
375 PRK01490 tig trigger factor; P 20.5 4.9E+02 0.011 23.5 7.6 107 83-203 39-152 (435)
376 TIGR00115 tig trigger factor. 20.5 6.1E+02 0.013 22.6 8.3 109 83-202 27-139 (408)
377 COG1921 SelA Selenocysteine sy 20.5 53 0.0011 29.7 1.2 28 20-48 212-239 (395)
378 PF15051 FAM198: FAM198 protei 20.4 1.5E+02 0.0032 26.0 3.8 31 104-135 293-323 (326)
No 1
>PLN02590 probable tyrosine decarboxylase
Probab=100.00 E-value=9.1e-46 Score=339.67 Aligned_cols=196 Identities=41% Similarity=0.810 Sum_probs=174.7
Q ss_pred cccccc-cCccccccccCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCC
Q 041549 2 AYRSAC-ICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDY 80 (218)
Q Consensus 2 A~Gg~~-~~~~~r~~~~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 80 (218)
||||++ +||++|+++.||++||||++||||||++|++||++++|++..+.+++..+++|+.....+.. ..+|+
T Consensus 325 A~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~------~~~d~ 398 (539)
T PLN02590 325 AYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKD------TVVNY 398 (539)
T ss_pred chhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccc------cCCCc
Confidence 899855 57999999999999999999999999999999999999998887889899999965432211 35789
Q ss_pred cCccccCCCCCchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCC--cchHHH-
Q 041549 81 KDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKR--ESDGSE- 157 (218)
Q Consensus 81 ~~~tl~~sR~~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~--~~~~~~- 157 (218)
.+|++++|||++|||+|++|+.+|.+||+++|++++++|++|++.|+++|+||++.+|.+++||||+.|.. ++..++
T Consensus 399 ~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~~~l~iVcFr~~~~~~~~~~~~~l 478 (539)
T PLN02590 399 KDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNER 478 (539)
T ss_pred cccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceEEEEEEecCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998742 222333
Q ss_pred -------hhc---eeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 158 -------LNQ---LSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 158 -------Ln~---~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
|++ .|++++.++|+.+||+|++||.|+++||+.+++.|.+.+.++-
T Consensus 479 n~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~ 534 (539)
T PLN02590 479 NRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFT 534 (539)
T ss_pred HHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 333 7899999999999999999999999999999999999987764
No 2
>PLN02880 tyrosine decarboxylase
Probab=100.00 E-value=6e-42 Score=312.96 Aligned_cols=198 Identities=48% Similarity=0.939 Sum_probs=175.3
Q ss_pred ccccc-ccCccccccccCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCC
Q 041549 2 AYRSA-CICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDY 80 (218)
Q Consensus 2 A~Gg~-~~~~~~r~~~~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 80 (218)
||||+ +++|++|+++.|+++||||++|+||||++|++||++++|+...+..++...++|+........ +.+|+
T Consensus 277 A~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~------~~~~~ 350 (490)
T PLN02880 277 AYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQAN------SVVDY 350 (490)
T ss_pred hhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccCHHHhcCcccccc------CCCCh
Confidence 79986 557999999999999999999999999999999999999987776788888999976543212 45788
Q ss_pred cCccccCCCCCchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCC--cchHHH-
Q 041549 81 KDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKR--ESDGSE- 157 (218)
Q Consensus 81 ~~~tl~~sR~~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~--~~~~~~- 157 (218)
.+|++++|||++|+|+|++|+.+|.+||++++++++++|+++++.|++.|+|+++.||.+++||||++|.. ++..+.
T Consensus 351 ~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~~~~~iv~Fr~~~~~~~~~~~~~~ 430 (490)
T PLN02880 351 KDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKL 430 (490)
T ss_pred hccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCceEEEEEEEeCCCCChhhHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999998642 122233
Q ss_pred -------hhc---eeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 041549 158 -------LNQ---LSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLL 205 (218)
Q Consensus 158 -------Ln~---~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~ 205 (218)
|++ .+++.+.++|+.+||+|++||+|+++||+.+++.|.++++++..+
T Consensus 431 n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~~ 488 (490)
T PLN02880 431 NHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLGK 488 (490)
T ss_pred HHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 333 689999999999999999999999999999999999999998764
No 3
>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-39 Score=279.89 Aligned_cols=196 Identities=43% Similarity=0.749 Sum_probs=181.0
Q ss_pred cccc-cccCccccccccCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCC
Q 041549 2 AYRS-ACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDY 80 (218)
Q Consensus 2 A~Gg-~~~~~~~r~~~~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 80 (218)
||.| +++|||+|++++|||.|||+++|+|||+.+.++|+.+|+||...+..+++.+|-||.+...+ ...|+
T Consensus 273 AYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~--------~~~Dy 344 (511)
T KOG0628|consen 273 AYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQG--------SAPDY 344 (511)
T ss_pred hhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhc--------cCCCc
Confidence 6765 88899999999999999999999999999999999999999977778899999999988765 45789
Q ss_pred cCccccCCCCCchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc---chHHH
Q 041549 81 KDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE---SDGSE 157 (218)
Q Consensus 81 ~~~tl~~sR~~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~---~~~~~ 157 (218)
..|.++.+|||++||+|+.+|.+|.++++++|+++++||+.+.+.+.+.+.||+.++.-+++||||.++.+. ...++
T Consensus 345 rhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~N~~ne~Ll~~ 424 (511)
T KOG0628|consen 345 RHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNKRILGLVCFRLKGDNEINEALLNR 424 (511)
T ss_pred cccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecccccceeEEeecCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998753 34567
Q ss_pred hhc---eeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 041549 158 LNQ---LSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLL 205 (218)
Q Consensus 158 Ln~---~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~ 205 (218)
+|. .+++++.+.|.++||++++.+.|+++||++.++.|.+.+.++..+
T Consensus 425 in~~g~i~l~~~~l~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~~ 475 (511)
T KOG0628|consen 425 LNSSGRIHLVPASLHGKFVLRFAVCSPLTNESDIDEAWKIIFEAADELFEA 475 (511)
T ss_pred HHhcCcEEEEEeeecceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 776 788999999999999999999999999999999999999986544
No 4
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=100.00 E-value=3.2e-37 Score=283.07 Aligned_cols=182 Identities=21% Similarity=0.341 Sum_probs=157.3
Q ss_pred ccccc-ccCccccccccCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCC
Q 041549 2 AYRSA-CICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDY 80 (218)
Q Consensus 2 A~Gg~-~~~~~~r~~~~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 80 (218)
||||+ ++++++|++++|+++|||+++|+||||++|+|||++++|++..+ +.+...++|+.... ..++
T Consensus 303 A~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~-~~~~~~~~Yl~~~~-----------~~d~ 370 (522)
T TIGR03799 303 AWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALM-SAIEHHAEYILRKG-----------SKDL 370 (522)
T ss_pred hhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHH-HHhccCcchhcCCC-----------CCcc
Confidence 78975 45799999999999999999999999999999999999998764 67788889985432 3456
Q ss_pred cCccccCCCCCchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc--------
Q 041549 81 KDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE-------- 152 (218)
Q Consensus 81 ~~~tl~~sR~~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~-------- 152 (218)
++++++|||++.++++|++|+.+|.+|+++++++.++++++|.+.|++.|+|+++++|.+++||||+.|.+-
T Consensus 371 ~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~ 450 (522)
T TIGR03799 371 GSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEPELCLLTYRYVPEEVQQALAKAD 450 (522)
T ss_pred ccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCCCccEEEEEEeChhhcccccccc
Confidence 788999999999999999999999999999999999999999999999999999999999999999987421
Q ss_pred --------chHHHhhc-----------eeecceEEC-------CEEEEEEecCCCCCcHHHHHHHHHHH
Q 041549 153 --------SDGSELNQ-----------LSLTQATLG-------GVYVIRCSIGTTLTQDRHIDDLRKLI 195 (218)
Q Consensus 153 --------~~~~~Ln~-----------~~vs~~~~~-------g~~~lR~~~~n~~tt~~di~~l~~~l 195 (218)
+..+.+|+ .|+++|.++ +..+||+|++||.||++||+.+++.-
T Consensus 451 ~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~~ 519 (522)
T TIGR03799 451 EEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDEQ 519 (522)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHHh
Confidence 11244443 688888776 45899999999999999999988754
No 5
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=100.00 E-value=5e-35 Score=259.38 Aligned_cols=141 Identities=39% Similarity=0.693 Sum_probs=126.8
Q ss_pred ccccc-ccCccccccccCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCC
Q 041549 2 AYRSA-CICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDY 80 (218)
Q Consensus 2 A~Gg~-~~~~~~r~~~~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 80 (218)
||||+ +++|++++++.|+++||||++|+||||++|++||++++|++..+.+.+..+++|+.+.+.+.. ...++
T Consensus 232 A~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~------~~~~~ 305 (373)
T PF00282_consen 232 AYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESD------ESYDY 305 (373)
T ss_dssp TTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-------GGGCE
T ss_pred cccccccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccc------ccccc
Confidence 89995 457999999999999999999999999999999999999999887788888999997654322 46778
Q ss_pred cCccccCCCCCchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEec
Q 041549 81 KDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLK 148 (218)
Q Consensus 81 ~~~tl~~sR~~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~ 148 (218)
.+++++|||+++++|+|++|+.+|.+||+++|++++++|++|++.|++.|+||++++|.+++||||++
T Consensus 306 ~~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~~~~~~vcFr~k 373 (373)
T PF00282_consen 306 GDYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVNEPDLNIVCFRYK 373 (373)
T ss_dssp EEGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSTTSSSEEEEEES
T ss_pred ccccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCceEEEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999999999999985
No 6
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=100.00 E-value=7.1e-33 Score=257.07 Aligned_cols=186 Identities=18% Similarity=0.243 Sum_probs=151.8
Q ss_pred ccccccccCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCC
Q 041549 10 PEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSR 89 (218)
Q Consensus 10 ~~~r~~~~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR 89 (218)
++++++++||++|||||+|||||+++||+||++++||+.. .+.++..++|+.....+ ...+.++++++|||
T Consensus 362 ~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~-~~~~~~~a~Yl~~~~~~--------~p~~~g~~~legSR 432 (608)
T TIGR03811 362 REVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRM-RDVISYFATYVFEKGAD--------IPALLGAYILEGSK 432 (608)
T ss_pred HhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHH-HHHHhcCcchhcccccc--------CcccccccceecCC
Confidence 4778899999999999999999999999999999999974 57788899999764422 11245678999999
Q ss_pred C-CchhHHHHHHHHh--cHHHHHHHHHHHHHHHHHHHHHHhc------CCCeEE--ecCCCceeEEEEecCCCc---chH
Q 041549 90 R-FKALKLWTVIRKH--GYSGLMYHIRSDVNMAKRFEAMVAK------DERFET--VEPRKCALVCFRLKPKRE---SDG 155 (218)
Q Consensus 90 ~-~~al~~w~~l~~~--G~~g~~~~i~~~~~la~~l~~~L~~------~~~~el--~~~~~~~iV~Fr~~~~~~---~~~ 155 (218)
+ ++|+|+|++++.+ |.+||++++++++++|+++++.|++ .+.||+ +.+|++++||||+.+.+. +..
T Consensus 433 ~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~pdlniV~Fr~~~~g~~~l~~~ 512 (608)
T TIGR03811 433 AGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTKPDFNMVDYVFNEKGNDDLVKM 512 (608)
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCCCCcceEEEEEecCCCccHHHH
Confidence 8 6799999999998 9999999999999999999999998 577887 789999999999987654 235
Q ss_pred HHhhc-----------------eeecceE--------------------------ECCEEEEEEecCCCCCcH-HHHHHH
Q 041549 156 SELNQ-----------------LSLTQAT--------------------------LGGVYVIRCSIGTTLTQD-RHIDDL 191 (218)
Q Consensus 156 ~~Ln~-----------------~~vs~~~--------------------------~~g~~~lR~~~~n~~tt~-~di~~l 191 (218)
|.+|+ ..+|+|. .++.++||.+++||+.++ +.++.+
T Consensus 513 n~ln~~i~~~~~~~~g~~~~~~~~~s~t~~~~~~yg~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~m~p~~~~~~~~~~~ 592 (608)
T TIGR03811 513 NKLNHAFYDYASYVKGSIYNNEFITSHTDFAIPDYGDSPFAFVNSLGFSDEEWQRAGKVTILRASVMTPYMNDKENFDEY 592 (608)
T ss_pred HHHHHHHHHhhccccCCCCCcceEeeecccccchhhhhHHHHHHHcCCChhhhccCCceEEEEEEecCcccCChhhHHHH
Confidence 66655 1233331 134689999999998776 678888
Q ss_pred HHHHHHHHHHHHh
Q 041549 192 RKLIQEKADRLLL 204 (218)
Q Consensus 192 ~~~l~~~~~~~~~ 204 (218)
++.|++...+.+.
T Consensus 593 ~~~~~~~~~~~~~ 605 (608)
T TIGR03811 593 APKIKAAMQEKLE 605 (608)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888776554
No 7
>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]
Probab=99.97 E-value=5.6e-33 Score=241.60 Aligned_cols=194 Identities=21% Similarity=0.299 Sum_probs=166.2
Q ss_pred cccc-cccCccccccccCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCC
Q 041549 2 AYRS-ACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDY 80 (218)
Q Consensus 2 A~Gg-~~~~~~~r~~~~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 80 (218)
|||| .++++++|+++.||++|||++||||||+++|..||++++|++..|.+.....+.|+++.+..++ -.+|.
T Consensus 291 AwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~Yd------vS~DT 364 (510)
T KOG0629|consen 291 AWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYD------VSYDT 364 (510)
T ss_pred ccccccccChhhHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceee------ccccc
Confidence 8998 5567999999999999999999999999999999999999999887777889999999988765 67888
Q ss_pred cCccccCCCCCchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceeEEEEecCCC-------
Q 041549 81 KDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKCALVCFRLKPKR------- 151 (218)
Q Consensus 81 ~~~tl~~sR~~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~~iV~Fr~~~~~------- 151 (218)
++.++||+|+.+.+|+|+.|++-|.+|++++|++++++|+||.+.|++.++++++.+ |++-.|||++.|+.
T Consensus 365 gdK~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~~pe~~nv~fw~vp~~lR~~~~~ 444 (510)
T KOG0629|consen 365 GDKAIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFELEPEHVNVCFWYVPPSLRGWQEN 444 (510)
T ss_pred ccchhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcCCCceEEEeeccCchHhccCccc
Confidence 999999999999999999999999999999999999999999999999999888864 88899999998763
Q ss_pred cchHHHhhc--------------eeec-ceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 152 ESDGSELNQ--------------LSLT-QATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 152 ~~~~~~Ln~--------------~~vs-~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
++...+|.+ ..++ ++.-+.+.++|+++.||-.+.+|+|-+++.|..+++.
T Consensus 445 ~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq~ 509 (510)
T KOG0629|consen 445 PERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQD 509 (510)
T ss_pred chhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhccC
Confidence 111122222 1222 1112335799999999999999999999999998754
No 8
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.97 E-value=3.3e-30 Score=232.26 Aligned_cols=184 Identities=15% Similarity=0.176 Sum_probs=154.8
Q ss_pred ccccccc---CccccccccCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCcc
Q 041549 2 AYRSACI---CPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVI 78 (218)
Q Consensus 2 A~Gg~~~---~~~~r~~~~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 78 (218)
||||+++ +++.+..+. +++|||+++|+|||+++|+|||+||+|++..+.+.+...++|++...
T Consensus 230 aq~g~~~p~~~~~~~~~~~-~~~~DSis~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~------------- 295 (431)
T TIGR01788 230 ASGGFIAPFVYPDLEWDFR-LPRVKSINVSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDE------------- 295 (431)
T ss_pred ccHHHHHHHhCCCchhhcC-CCCceEEEECchhccCCCCCcEEEEEeChHHcchhheecccccCCCC-------------
Confidence 6776543 588887775 89999999999999999999999999998655566777788986422
Q ss_pred CCcCccccCCCCC-chhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceeEEEEecCCC-----
Q 041549 79 DYKDWQIALSRRF-KALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP-RKCALVCFRLKPKR----- 151 (218)
Q Consensus 79 ~~~~~tl~~sR~~-~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-~~~~iV~Fr~~~~~----- 151 (218)
.++++++||++ ++++.|+.|+.+|.+|++++++++++++++|.+.|++.|+|+++.+ |.+++||||+++.+
T Consensus 296 --~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~~iV~Fr~~~~~~~~~~ 373 (431)
T TIGR01788 296 --PTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGIPLVAFKLKDDADPGYT 373 (431)
T ss_pred --CCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCceEEEEEeCCCCCCCcC
Confidence 13689999997 7899999999999999999999999999999999999999999997 89999999998632
Q ss_pred c-chHHHhhc-e-----eecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 152 E-SDGSELNQ-L-----SLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 152 ~-~~~~~Ln~-~-----~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
. +..+.|++ . +.+++.++|..++|+++ +++++.+.++.+++.|.++..++
T Consensus 374 ~~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~~-~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 374 LYDLSHRLRERGWIVPAYTLPKNAEDIVVMRIVV-REGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred HHHHHHHHHHCCCcccCCCCCCccCCeEEEEEEe-cCCCCHHHHHHHHHHHHHHHHhh
Confidence 1 22355665 3 35567788999999998 68999999999999999987664
No 9
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.96 E-value=3e-29 Score=227.07 Aligned_cols=191 Identities=22% Similarity=0.285 Sum_probs=155.7
Q ss_pred ccccccc-Ccccccc-ccCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccC
Q 041549 2 AYRSACI-CPEFRHY-LNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVID 79 (218)
Q Consensus 2 A~Gg~~~-~~~~r~~-~~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 79 (218)
||||+++ +.+++.. ..|+++||||++|+|||+++|++||++++||+..+.+.+...++|+....
T Consensus 245 A~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~-------------- 310 (460)
T COG0076 245 AFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGG-------------- 310 (460)
T ss_pred cccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCCC--------------
Confidence 8999877 7777777 68999999999999999999999999999999766677777777776431
Q ss_pred CcCccccCCCCC-chhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCC---cchH
Q 041549 80 YKDWQIALSRRF-KALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKR---ESDG 155 (218)
Q Consensus 80 ~~~~tl~~sR~~-~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~---~~~~ 155 (218)
..++++.+||.+ .+++.|+.|+.+|.+||++++++++++++++++.|++.+.||++++|.+++||||+++.. .+..
T Consensus 311 ~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p~l~~V~fr~~~~~~~~~~~~ 390 (460)
T COG0076 311 IPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDEDTLADLS 390 (460)
T ss_pred cCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCCccceEEEEcCCcccchhchH
Confidence 235689999997 789999999999999999999999999999999999998899999999999999996532 1122
Q ss_pred HHhhc--------------eeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhhcC
Q 041549 156 SELNQ--------------LSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLLQE 207 (218)
Q Consensus 156 ~~Ln~--------------~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~~~ 207 (218)
..+++ .++..+.+.++.++++...++.++.++ +.+...+.+.+.+......
T Consensus 391 ~~~~~~gw~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 455 (460)
T COG0076 391 ERLDRRGWQVPAQLLPKGLAIVFGTHVTGRQGLKFIVANLLITDRE-ESLLALIEEPGREIEDLLE 455 (460)
T ss_pred HHHHhcCceeecccCCccceeeeeeEEeeeeeehhhcchhhhhhhh-HHHHHHhhhhhhhhhcccc
Confidence 23222 345566677888899999888888888 7777777776666654443
No 10
>PLN02263 serine decarboxylase
Probab=99.95 E-value=9.7e-28 Score=216.48 Aligned_cols=173 Identities=17% Similarity=0.193 Sum_probs=142.7
Q ss_pred ccccccc-CccccccccCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCC
Q 041549 2 AYRSACI-CPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDY 80 (218)
Q Consensus 2 A~Gg~~~-~~~~r~~~~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 80 (218)
||||+++ +.+..+.+.+.+.||||++|+|||+++|++||++++|++. + +++..+++|+...+
T Consensus 271 A~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~-~-~~~~~~~~Yl~~~d--------------- 333 (470)
T PLN02263 271 ALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH-I-NVLSSNVEYLASRD--------------- 333 (470)
T ss_pred cchhhHhhhcccccccCCCcCccEEEECCccccCCCcCEEEEEEehhh-H-hhhccChHhhCCCC---------------
Confidence 8999766 4344667888899999999999999999999999999754 3 67788889997642
Q ss_pred cCccccCCCCCc-hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhh
Q 041549 81 KDWQIALSRRFK-ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELN 159 (218)
Q Consensus 81 ~~~tl~~sR~~~-al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln 159 (218)
.+++|||++. ++++|++|+.+|.+|+++++++++++|+++.+.|++. +++++.+|.+++|+|+-+. + +.+.
T Consensus 334 --~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-g~~~~~~p~s~~V~f~~p~-~----~~~~ 405 (470)
T PLN02263 334 --ATIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-GISAMLNELSSTVVFERPK-D----EEFV 405 (470)
T ss_pred --CCcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEeCCCceEEEEecCc-h----HHhh
Confidence 4789999984 8999999999999999999999999999999999997 8888888999999998542 1 1233
Q ss_pred cee-ecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 160 QLS-LTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 160 ~~~-vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
+.| ++. .+ ..++++++ |+.+.+.+|+|++.|++.......
T Consensus 406 ~gW~L~~--~~--~~~Hivvm-phv~~~~id~fi~DL~~~~~~~~~ 446 (470)
T PLN02263 406 RRWQLAC--QG--NIAHVVVM-PSVTIEKLDYFLKELVEKRSTWYP 446 (470)
T ss_pred cceEEcc--CC--CcEEEEEc-CCCCHHHHHHHHHHHHHHHhhhhh
Confidence 444 332 12 35999986 899999999999999998776543
No 11
>PLN03032 serine decarboxylase; Provisional
Probab=99.94 E-value=5.2e-26 Score=201.50 Aligned_cols=166 Identities=17% Similarity=0.223 Sum_probs=135.2
Q ss_pred ccccccc-CccccccccCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCC
Q 041549 2 AYRSACI-CPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDY 80 (218)
Q Consensus 2 A~Gg~~~-~~~~r~~~~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 80 (218)
||||+.+ +.+..+.++..+.+||+++|+|||+++|+|||+|++|++. + +.+..+++|+...
T Consensus 204 A~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~-~-~~~~~~~~Yl~~~---------------- 265 (374)
T PLN03032 204 ALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKH-V-KALSQNVEYLNSR---------------- 265 (374)
T ss_pred cchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchh-h-HhhccCCcccCCC----------------
Confidence 6776544 3333455566678999999999999999999999999864 3 5677788898743
Q ss_pred cCccccCCCC-CchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhh
Q 041549 81 KDWQIALSRR-FKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELN 159 (218)
Q Consensus 81 ~~~tl~~sR~-~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln 159 (218)
++|++|||+ +.++++|++|+.+|.+||++++++++++|+++.+.|++. +++++.+|.+++|||+-+.. +.+.
T Consensus 266 -d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-~~~~~~~p~~~~V~f~~~~~-----~~~~ 338 (374)
T PLN03032 266 -DATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-GLTCRLNELSSTVVFERPMD-----EAFI 338 (374)
T ss_pred -CCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEECCCceEEEEcCCCc-----HhHh
Confidence 358999998 579999999999999999999999999999999999996 89998889999999987632 1233
Q ss_pred cee-ecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHH
Q 041549 160 QLS-LTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 160 ~~~-vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~ 197 (218)
+.| ++. .+ .++|++++ |+++.+.+|+|++.|++
T Consensus 339 ~~w~l~~--~~--~~~hi~vm-~~~~~~~id~fi~dl~~ 372 (374)
T PLN03032 339 KKWQLAC--EG--DIAHVVVM-PNVTVEKLDEFVEELVE 372 (374)
T ss_pred heeeecc--cC--CEEEEEEC-CCCCHHHHHHHHHHHhc
Confidence 544 442 22 37999996 89999999999999875
No 12
>PRK02769 histidine decarboxylase; Provisional
Probab=99.92 E-value=2.5e-24 Score=191.46 Aligned_cols=168 Identities=20% Similarity=0.239 Sum_probs=135.0
Q ss_pred ccccccc-CccccccccCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCC
Q 041549 2 AYRSACI-CPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDY 80 (218)
Q Consensus 2 A~Gg~~~-~~~~r~~~~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 80 (218)
|+||+.+ +.+.++.+++.+++||+++|+|||+++|+|||++++|++.. ..+...++|+...
T Consensus 201 A~gg~~~p~~~~~~~~d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~~--~~~~~~~~yl~~~---------------- 262 (380)
T PRK02769 201 ALSGMILPFVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAKKKYV--ERISVDVDYIGSR---------------- 262 (380)
T ss_pred cccceeecccCccccCCccCCCCEEEECCcccCCCCCCcEEEEEehhhh--hhcccCccccCCC----------------
Confidence 5676554 44555667777799999999999999999999999998643 3455556776532
Q ss_pred cCccccCCCC-CchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhh
Q 041549 81 KDWQIALSRR-FKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELN 159 (218)
Q Consensus 81 ~~~tl~~sR~-~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln 159 (218)
+++++|||+ +.++++|++|+.+|.+|+++++++++++++++.+.|++. +++++.+|.+++|||+.+.. .+.
T Consensus 263 -d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~~-g~~~~~~p~~~~v~f~~~~~------~~~ 334 (380)
T PRK02769 263 -DQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQAN-GIPAWRNPNSITVVFPCPSE------RIW 334 (380)
T ss_pred -CCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEcCCCceEEEEcCCCH------HHH
Confidence 357899998 578999999999999999999999999999999999884 99999999999999976531 122
Q ss_pred cee-ecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHH
Q 041549 160 QLS-LTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 160 ~~~-vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~ 200 (218)
+.| ++.. + .++|++++ |+++.+.||.+++.|.+.-.
T Consensus 335 ~~w~l~~~--~--~~~hi~~~-~~~~~~~~~~f~~dl~~~~~ 371 (380)
T PRK02769 335 KKWHLATS--G--NQAHIITM-PHHNKQQIDSLIDELIFDLK 371 (380)
T ss_pred hCeeEccc--C--CEEEEEEC-CCCCHHHHHHHHHHHHHHHh
Confidence 444 4432 2 37999986 89999999999999887654
No 13
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.77 E-value=1.5e-18 Score=151.30 Aligned_cols=149 Identities=36% Similarity=0.585 Sum_probs=118.0
Q ss_pred ccccccc-CccccccccCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCC
Q 041549 2 AYRSACI-CPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDY 80 (218)
Q Consensus 2 A~Gg~~~-~~~~r~~~~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~ 80 (218)
||+...+ .+..+....+++++||+++++|||+++|++||+++++
T Consensus 186 a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~----------------------------------- 230 (345)
T cd06450 186 AYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR----------------------------------- 230 (345)
T ss_pred hhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-----------------------------------
Confidence 4554333 2333443456789999999999999999999987765
Q ss_pred cCccccCCCCCchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-----Cc-ch
Q 041549 81 KDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-----RE-SD 154 (218)
Q Consensus 81 ~~~tl~~sR~~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-----~~-~~ 154 (218)
++++|.+++.+|.+|+++++++..++++++.+.|+++++++++.++..++|+|++.+. +. +.
T Consensus 231 ------------~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~iv~f~~~~~~~~~~~~~~i 298 (345)
T cd06450 231 ------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKPSVKLDELNYDL 298 (345)
T ss_pred ------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCceeEEEEEECCcchhhHHHHHH
Confidence 5577888999999999999999999999999999999999999888999999998763 11 22
Q ss_pred HHHhhc--e-eecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHH
Q 041549 155 GSELNQ--L-SLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 155 ~~~Ln~--~-~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~ 197 (218)
.+.|.+ . +++.....+..++|++++++++|.+|||++++.|++
T Consensus 299 ~~~L~~~g~~~~~~~~~~~~~~lRis~~~~~~t~~di~~l~~~l~~ 344 (345)
T cd06450 299 SDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALLEDIER 344 (345)
T ss_pred HHHHHhcCCEEEEeeEECCeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 345554 2 344444456679999998778899999999999975
No 14
>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]
Probab=99.75 E-value=2.2e-17 Score=145.92 Aligned_cols=191 Identities=15% Similarity=0.107 Sum_probs=148.7
Q ss_pred ccccccc--C--ccccccccCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCc
Q 041549 2 AYRSACI--C--PEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPV 77 (218)
Q Consensus 2 A~Gg~~~--~--~~~r~~~~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~ 77 (218)
|-|||++ . ++.+.-| +..++-|+++|.||++++|.|+|.++.|++..+.+.+..+++|++..
T Consensus 257 ~~GgFi~p~~~~~~~~fdF-r~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~------------- 322 (491)
T KOG1383|consen 257 CLGGFINPAGYLNEEEFDF-RVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGI------------- 322 (491)
T ss_pred cCccccccccccCcccccc-CCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCcc-------------
Confidence 4578776 3 4445444 68888999999999999999999999999999888888888887743
Q ss_pred cCCcCccccCCCCCc-hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc-chH
Q 041549 78 IDYKDWQIALSRRFK-ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE-SDG 155 (218)
Q Consensus 78 ~~~~~~tl~~sR~~~-al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~-~~~ 155 (218)
+..+|+.+||++. ....|++|.++|.+||.+..+++++.++.|++.|++++++.++.+|...++.|.-..-+. +..
T Consensus 323 --y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gkp~vs~~~~~s~~~~i~els 400 (491)
T KOG1383|consen 323 --YASPTLNGSRPGSQVAAQWAALMSLGEEGYRENTQNIVETARKLREGIENIKGIKIVGKPLVSFILFGSNDVNIFELS 400 (491)
T ss_pred --ccCcccccCCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccccceecCCCcEEEEEccCCccchhhhh
Confidence 4467999999965 678999999999999999999999999999999999999999999877777775544332 223
Q ss_pred HHhhc-eeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041549 156 SELNQ-LSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLLQEPE 209 (218)
Q Consensus 156 ~~Ln~-~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~~~~~ 209 (218)
+.|.+ +|+.++ ++-+..+-+|+.--++.++-.|+|+..|++...++.+..++.
T Consensus 401 d~l~~~GW~lna-lq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~p~~~ 454 (491)
T KOG1383|consen 401 DLLRKKGWILNA-LQFPAAIHICVTRVHAREDVADRFVADIRKVVEELKSLPESK 454 (491)
T ss_pred HHHHhcCcCccc-cCCCCceEEEEEeeeccHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 44544 665432 233334555554445556668999999999999998877654
No 15
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.5e-15 Score=134.76 Aligned_cols=167 Identities=17% Similarity=0.238 Sum_probs=110.4
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCC-cCccc-cCCCCCc-----
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDY-KDWQI-ALSRRFK----- 92 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~-~~~tl-~~sR~~~----- 92 (218)
-+||++.+++||||++|-|+|+||+|++.. +.+ .|...+....+. .+. ...++ +..++|+
T Consensus 213 l~~Df~afsgHKwl~gP~GiGvLy~r~~~l--~~l--~P~~~gg~~~~~---------~~~~~~~~~~~~p~rfe~gTpn 279 (405)
T COG0520 213 LGCDFLAFSGHKWLLGPTGIGVLYVRKELL--EEL--EPFLGGGGMIEY---------VSRDEGVTLAELPLRFEAGTPN 279 (405)
T ss_pred cCCCEEEEcccccccCCCceEEEEEchHHH--hhc--CCcccCCCceee---------ecccccccccCcchhhccCCch
Confidence 369999999999999999999999999854 232 222222211110 011 01122 2333433
Q ss_pred ---hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC---CceeEEEEecCCCcch-HHHhhceee-c
Q 041549 93 ---ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR---KCALVCFRLKPKRESD-GSELNQLSL-T 164 (218)
Q Consensus 93 ---al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~---~~~iV~Fr~~~~~~~~-~~~Ln~~~v-s 164 (218)
++.+=.+++.+-..|+.++-++..++++++.+.|+++|+++++.++ ..++++|...+..+.+ ...|++..+ +
T Consensus 280 ~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~~~~~dv~~~L~~~gI~v 359 (405)
T COG0520 280 IAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAV 359 (405)
T ss_pred HHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCCCCHHHHHHHHHhCCeEE
Confidence 2333345555555555556666679999999999999999999875 6999999999876544 456666222 1
Q ss_pred ceE----------ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHH
Q 041549 165 QAT----------LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 165 ~~~----------~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~ 200 (218)
.+. ++-...+|+|++ +|+|++|||+|++.|++...
T Consensus 360 r~g~~ca~p~~~~~~~~~~iR~S~~-~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 360 RAGHHCAQPLHRLLGVDATIRASLH-LYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred EeccccccHHHHhcCCCCceEEEEe-ecCCHHHHHHHHHHHHHHhh
Confidence 110 011122999995 89999999999999998753
No 16
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.65 E-value=3e-15 Score=131.68 Aligned_cols=159 Identities=15% Similarity=0.213 Sum_probs=119.0
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCC-chhHHH
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRF-KALKLW 97 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~-~al~~w 97 (218)
..++|++++++|||+++|.++|+++++++..+ +.+....+|+.... .+...|+|++ .++.+|
T Consensus 208 ~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~-~~l~~~~~~~~~~~----------------~~~~~gt~~~~~~~~~~ 270 (371)
T PRK13520 208 LPGVDSITIDPHKMGLAPIPAGGILFRDESYL-DALAVDTPYLTSKK----------------QATLTGTRSGAGVAATY 270 (371)
T ss_pred CCCCceEEECCccccCccCCceEEEEcCHHHH-HhhcccCccccCCC----------------CcceEeeccChHHHHHH
Confidence 46789999999999999999999999887654 44433334543211 1234566664 356899
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc-e-eecceEECCEEEEE
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ-L-SLTQATLGGVYVIR 175 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~-~-~vs~~~~~g~~~lR 175 (218)
.+++.++.+|+++++++..+++++|.+.|++. +++++.++..++|+|.+++ ..+..+.|.+ . .++. ..+..++|
T Consensus 271 ~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~-~~~v~~~L~~~gi~v~~--~~~~~~iR 346 (371)
T PRK13520 271 AVMKYLGREGYRKVVERCMENTRWLAEELKER-GFEPVIEPVLNIVAFDDPN-PDEVREKLRERGWRVSV--TRCPEALR 346 (371)
T ss_pred HHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhC-CCEEecCCCceEEEEecCC-HHHHHHHHHHCCceecc--CCCCCEEE
Confidence 99999999999999999999999999999987 8986666778899998863 2233445543 3 3332 23346799
Q ss_pred EecCCCCCcHHHHHHHHHHHHHHH
Q 041549 176 CSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 176 ~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
++++ +++|++||+.+++.|++..
T Consensus 347 is~~-~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 347 IVCM-PHVTREHIENFLEDLKEVK 369 (371)
T ss_pred EEEE-CCCCHHHHHHHHHHHHHHh
Confidence 9984 6999999999999998764
No 17
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.61 E-value=9.9e-15 Score=128.60 Aligned_cols=156 Identities=18% Similarity=0.230 Sum_probs=117.1
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCC-chhHHHH
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRF-KALKLWT 98 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~-~al~~w~ 98 (218)
..+|++++++|||+++|.++|+++++++..+ +.+....+|+.... .+..+|+|.. ..+.+|.
T Consensus 214 ~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~-~~l~~~~~~~~~~~----------------~~~~~gt~~~~~~~~~~~ 276 (373)
T TIGR03812 214 PGVQSITIDPHKMGLSPIPAGGILFRSKSYL-KYLSVDAPYLTVKK----------------QATITGTRSGASAAATYA 276 (373)
T ss_pred CCCCEEEECccccCCCcCCceEEEEeCHHHH-hhhcccCcccCCCC----------------CcceEeechhHHHHHHHH
Confidence 4789999999999999999999998877654 44433334443211 1234577764 4568889
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceEECCEEEEEE
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQATLGGVYVIRC 176 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~~~g~~~lR~ 176 (218)
+++.++.+|+.+++++..+++++|++.|++. +++.+.++..++|+|+.++. .+..+.|.+ .+++.. .+..++|+
T Consensus 277 ~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~v~~~~~~~-~~v~~~L~~~gi~v~~~--~~~~~iRi 352 (373)
T TIGR03812 277 VIKYLGREGYRKIVAECMENTRYLVEELKKI-GFEPVIEPVLNIVAFEVDDP-EEVRKKLRDRGWYVSVT--RCPKALRI 352 (373)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEcCCCceEEEEEeCCH-HHHHHHHHHCCceeccC--CCCCEEEE
Confidence 9999999999999999999999999999997 67655567889999998643 233445544 334332 24568999
Q ss_pred ecCCCCCcHHHHHHHHHHHHH
Q 041549 177 SIGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 177 ~~~n~~tt~~di~~l~~~l~~ 197 (218)
+++ +++|++|++++++.|++
T Consensus 353 s~~-~~~t~edid~l~~~L~~ 372 (373)
T TIGR03812 353 VVM-PHVTREHIEEFLEDLKE 372 (373)
T ss_pred EEE-CCCCHHHHHHHHHHHhh
Confidence 985 68999999999999975
No 18
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.45 E-value=2.9e-12 Score=113.04 Aligned_cols=166 Identities=13% Similarity=0.131 Sum_probs=108.1
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcC-Cccc-ccccCCCCCCCCCCCCccCCcCccccCCCCCc-hhHH
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST-KSDI-MRNRSPASSTSTNVAPVIDYKDWQIALSRRFK-ALKL 96 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~-~~~y-l~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~-al~~ 96 (218)
.++|++++++|||+++|.|+|++++++...+. .+.. ...+ ....+. .......+. .++.... .+.+
T Consensus 188 ~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~r~~-~~t~~~~~~~a~ 256 (376)
T TIGR01977 188 LAIDMLAFTGHKGLLGPQGTGGLYIREGIKLK-PLKSGGTGSHSALIDQ---------PSELPDRFE-SGTLNTPGIAGL 256 (376)
T ss_pred cCCCEEEecccccccCCCCceEEEEcCCcCcC-ceecCCCccccccccc---------cccchhhcc-CCCCCHHHHHHH
Confidence 46999999999999999999999999886432 2211 1010 000000 000000000 1122211 3456
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC----CceeEEEEecCCCcc-hHHHhhc---eeecceE-
Q 041549 97 WTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR----KCALVCFRLKPKRES-DGSELNQ---LSLTQAT- 167 (218)
Q Consensus 97 w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~----~~~iV~Fr~~~~~~~-~~~~Ln~---~~vs~~~- 167 (218)
+.+++.+...|++++.++..++++++.+.|++.++++++.+. ..++|+|+..+.+.+ ..+.|.+ .++....
T Consensus 257 ~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~~gi~v~~g~~ 336 (376)
T TIGR01977 257 NAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLH 336 (376)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCCCHHHHHHHHhccCCEEEEcccc
Confidence 667888888888888888899999999999999999998742 478999999755432 3345543 2222111
Q ss_pred ----------ECCEEEEEEecCCCCCcHHHHHHHHHHHHH
Q 041549 168 ----------LGGVYVIRCSIGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 168 ----------~~g~~~lR~~~~n~~tt~~di~~l~~~l~~ 197 (218)
......+|+++ ++++|++||+++++.|++
T Consensus 337 ~~~~~~~~~g~~~~~~iRis~-~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 337 CAPLAHKTIGTFATGTIRLSL-GYFNTEEEIEKLLEALSE 375 (376)
T ss_pred cchHHHHHhCCCCCCeEEEec-CCCCCHHHHHHHHHHHhh
Confidence 01235799997 589999999999999975
No 19
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.43 E-value=2e-12 Score=118.59 Aligned_cols=174 Identities=17% Similarity=0.064 Sum_probs=110.1
Q ss_pred CCCCCCeeeecccccCCCcccee-----EEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCC-cCccccCCCCC
Q 041549 18 GVELADSVSLNPHKWFLTNMDCG-----CLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDY-KDWQIALSRRF 91 (218)
Q Consensus 18 gi~~aDSi~~d~HK~l~~P~~~g-----~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~-~~~tl~~sR~~ 91 (218)
|--+||++++++|||+++|+++| ++++|++. . +.+. +..++..... -.+++ ....+.-.|.+
T Consensus 258 ~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~-~-~~lp--~~~v~~~g~~--------~~l~~~r~~~i~r~~a~ 325 (481)
T PRK04366 258 GDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEEL-A-PFLP--VPVVEKDGDR--------YRLDYDRPKSIGRVRAF 325 (481)
T ss_pred cccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhh-H-hhCC--CCeeeccCCc--------eeecccccccCCCcccc
Confidence 44579999999999999998764 89998763 2 3332 2222211100 00111 11122222333
Q ss_pred c-----hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceeEEEEec-----CCCcc-hHHHhh
Q 041549 92 K-----ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP-RKCALVCFRLK-----PKRES-DGSELN 159 (218)
Q Consensus 92 ~-----al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-~~~~iV~Fr~~-----~~~~~-~~~~Ln 159 (218)
. +++.|..++.+|.+|++++.+++++++++|++.|+++ +++..+ +....+.|... +.+.. ..++|.
T Consensus 326 t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~L~ 403 (481)
T PRK04366 326 YGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI--YDLPYDRPCMHEFVLSGKKLKETGVRTLDIAKRLL 403 (481)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--CcccCCCCeeEEEEEECccccccCCCHHHHHHHHH
Confidence 3 4789999999999999999999999999999999987 554432 33334444432 22222 234444
Q ss_pred c-eeecceEE---CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 041549 160 Q-LSLTQATL---GGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLLQ 206 (218)
Q Consensus 160 ~-~~vs~~~~---~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~~ 206 (218)
+ ++...+.. .....+|++++ .++|++|||++++.|.++..++.++.
T Consensus 404 ~~Gi~~~~~~~p~~~~~~l~is~~-e~~t~edid~l~~~l~~i~~~~~~~~ 453 (481)
T PRK04366 404 DYGFHPPTIYFPLIVPEALMIEPT-ETESKETLDAFIAAMKQIAEEAKENP 453 (481)
T ss_pred HCCccCCccccccccCCeEEEccc-CCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 4 33322111 01246999995 79999999999999999998887654
No 20
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.36 E-value=2.1e-11 Score=108.81 Aligned_cols=166 Identities=15% Similarity=0.163 Sum_probs=105.6
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCc-------cc-cCCCCC-
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDW-------QI-ALSRRF- 91 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~-------tl-~~sR~~- 91 (218)
.+|.+++++|| +++|.|+|++++++.. + +.+ . ++.+..... ...++.++ .+ .|+...
T Consensus 209 ~~d~~~~s~~K-~~gp~G~G~l~~~~~~-~-~~~--~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~e~GT~~~~ 274 (398)
T TIGR03392 209 DIDFYAFSGHK-LYGPTGIGVLYGKTEL-L-EAM--P-PWQGGGKML--------SHVSFDGFIPQAVPHRFEAGTPNIA 274 (398)
T ss_pred CCCEEEEeccc-ccCCCceEEEEEcHHH-H-hhC--C-CeecCCceE--------eeccccccccCCChhhccCCCCCHH
Confidence 48999999999 5679999999987653 2 222 1 122111000 00000011 11 122222
Q ss_pred chhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcc-hHHHhhc--eeecceE-
Q 041549 92 KALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRES-DGSELNQ--LSLTQAT- 167 (218)
Q Consensus 92 ~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~-~~~~Ln~--~~vs~~~- 167 (218)
..+.+..+++.+-..|+.++.++..++++++.+.|+++|++++..++..++++|++.+.+.+ ..+.|.+ +.+....
T Consensus 275 ~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~g~~ 354 (398)
T TIGR03392 275 GVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQH 354 (398)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCCcEEEEEeCCcCHHHHHHHHHhCCEEEecCcc
Confidence 23455566666655566666677779999999999999999988777889999998754332 3345544 3332211
Q ss_pred --------ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 168 --------LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 168 --------~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
.+...++|+|++ +++|++||+.+++.|+++...
T Consensus 355 ~~~~~~~~~g~~~~iRvS~~-~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 355 CAQPLMAALGVSGTLRASFA-PYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred chHHHHHHhCCCCEEEEEee-ccCCHHHHHHHHHHHHHHHHH
Confidence 011358999995 799999999999999987654
No 21
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.36 E-value=2.9e-11 Score=108.34 Aligned_cols=170 Identities=9% Similarity=0.044 Sum_probs=97.6
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccc-cCCCCCch-hHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQI-ALSRRFKA-LKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl-~~sR~~~a-l~~w~ 98 (218)
++|.+++++||||++|.| |++|++.+... ........|....... . .+....+......+ .|+-...+ +.+-.
T Consensus 223 gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~-~~~p~~~g~~~~~~~~-~--~~~~~~~~~~~~~~~~GT~~~~~~~~l~~ 297 (406)
T TIGR01814 223 GVDFACWCTYKYLNAGPG-AGAFVHEKHAH-TERPRLAGWWGHARPT-R--FKMDNTLGLIPCGFRISNPPILSVAALRG 297 (406)
T ss_pred CCCEEEEcCccccCCCCC-eEEEEehhhhh-hcCCCCCcccCCCCcc-c--cccccccCCCccceeeCCccHHHHHHHHH
Confidence 689999999999988879 77777665431 1111111121111100 0 00000000000001 11111111 22333
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCC----CceeEEEEecCCCc-chHHHhhc-eeecceEE
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKD----ERFETVEPR----KCALVCFRLKPKRE-SDGSELNQ-LSLTQATL 168 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~----~~~el~~~~----~~~iV~Fr~~~~~~-~~~~~Ln~-~~vs~~~~ 168 (218)
+++.+-..|+.++.++..++++++.+.|++. ++++++.+. ..++|+|+++ .+. +..+.|.+ ..+.. .
T Consensus 298 al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~~~~~~~~~L~~~gi~v~--~ 374 (406)
T TIGR01814 298 SLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-VPGKAVFQALIKRGVIGD--K 374 (406)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-CCHHHHHHHHHHCCEEEe--c
Confidence 5555545556666677779999999999875 469998752 3579999986 322 33445544 22221 2
Q ss_pred CCEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 169 GGVYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 169 ~g~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
.+...+|+++++.+||++|||++++.|+++
T Consensus 375 ~~~~~iRiS~~~~~nt~~did~l~~~l~~~ 404 (406)
T TIGR01814 375 REPSVIRVAPVPLYNTFVDVYDAVNVLEEI 404 (406)
T ss_pred cCCCeEEEechhccCCHHHHHHHHHHHHHH
Confidence 333589999966799999999999999875
No 22
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.35 E-value=3.3e-11 Score=108.54 Aligned_cols=168 Identities=18% Similarity=0.218 Sum_probs=105.5
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCc--------
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK-------- 92 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~-------- 92 (218)
++|.+++++|| +++|.|+|++++++.. + +.+ . ++......... ...+...+ .+..++|+
T Consensus 225 ~~d~~~~s~~K-~~gp~G~G~l~~~~~~-~-~~~--~-p~~~g~~~~~~------~~~~~~~~-~~~~~r~e~GT~~~~~ 291 (424)
T PLN02855 225 GADFLVASSHK-MCGPTGIGFLWGKSDL-L-ESM--P-PFLGGGEMISD------VFLDHSTY-APPPSRFEAGTPAIGE 291 (424)
T ss_pred CCCEEEeeccc-ccCCCccEEEEEchhh-h-hcC--C-CEecCCCceee------eecCcccc-CCChhhccCCChHHHH
Confidence 47999999999 5789999999998663 2 222 2 22211110000 00000001 11122332
Q ss_pred hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC------CceeEEEEecCCCcc-hHHHhhc--e-e
Q 041549 93 ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR------KCALVCFRLKPKRES-DGSELNQ--L-S 162 (218)
Q Consensus 93 al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~------~~~iV~Fr~~~~~~~-~~~~Ln~--~-~ 162 (218)
.+.+..+++.+-..|++++.++..++++++.+.|+++++++++.+. ..++|+|++++.+.+ ..+.|.+ . .
T Consensus 292 ~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~~~~~~v~~~L~~~~gI~ 371 (424)
T PLN02855 292 AIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVA 371 (424)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECCcCHHHHHHHhcccCCEE
Confidence 2345556666655567777777789999999999999999999642 358999998754432 3455543 2 2
Q ss_pred ecceE---------ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 163 LTQAT---------LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 163 vs~~~---------~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
+.... .+-..++|+|+ ++++|++||+++++.|+++...+
T Consensus 372 v~~g~~c~~~~~~~~g~~~~iRiS~-~~ynt~~di~~l~~~l~~~~~~~ 419 (424)
T PLN02855 372 IRSGHHCAQPLHRYLGVNASARASL-YFYNTKEEVDAFIHALKDTIAFF 419 (424)
T ss_pred EechhhhhHHHHHHhCCCCeEEEEe-ccCCCHHHHHHHHHHHHHHHHHH
Confidence 22110 11124799999 58999999999999999987764
No 23
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.35 E-value=2.5e-11 Score=108.37 Aligned_cols=166 Identities=16% Similarity=0.166 Sum_probs=105.8
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCc-------cc-cCCCCC-
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDW-------QI-ALSRRF- 91 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~-------tl-~~sR~~- 91 (218)
++|.+++++|| +++|.|+|+++++++. + +.+. ++.+..... ...++.++ .+ .|+...
T Consensus 212 ~~d~~~~s~~K-~~gp~G~G~l~~~~~~-~-~~~~---~~~~~~~~~--------~~~~~~~~~~~~~~~~~e~Gt~~~~ 277 (401)
T PRK10874 212 DIDFYAFSGHK-LYGPTGIGVLYGKSEL-L-EAMS---PWQGGGKML--------TEVSFDGFTPQSAPWRFEAGTPNVA 277 (401)
T ss_pred CCCEEEEeccc-ccCCCccEEEEEchHH-H-hcCC---CeecCCcce--------EeeccCccCCCCChhhccCCCcCHH
Confidence 48999999999 5689999999987653 2 2221 122111000 00000011 11 122222
Q ss_pred chhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcc-hHHHhhc--eeecceE-
Q 041549 92 KALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRES-DGSELNQ--LSLTQAT- 167 (218)
Q Consensus 92 ~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~-~~~~Ln~--~~vs~~~- 167 (218)
..+.+..++..+...|+.+..++..++++++.+.|+++|+++++.++..++++|++.+.+.+ ..+.|.+ +.+....
T Consensus 278 ~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~gI~v~~g~~ 357 (401)
T PRK10874 278 GVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQDSSLLAFDFAGVHHSDLVTLLAEYGIALRAGQH 357 (401)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCcEEEEEECCcCHHHHHHHHHHCCcEEecccc
Confidence 23455556666655666666777778999999999999999998888889999998654332 2345544 2232211
Q ss_pred --------ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 168 --------LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 168 --------~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
.+...++|+|++ +++|++|||++++.|+++...
T Consensus 358 ~~~~~~~~~g~~~~iRiS~~-~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 358 CAQPLLAALGVTGTLRASFA-PYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred chHHHHHHhCCCCEEEEEec-ccCCHHHHHHHHHHHHHHHHH
Confidence 111358999995 689999999999999987664
No 24
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.34 E-value=4e-11 Score=107.33 Aligned_cols=171 Identities=16% Similarity=0.181 Sum_probs=104.5
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCc--Cccc-cCCCCCc-hhHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYK--DWQI-ALSRRFK-ALKL 96 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~--~~tl-~~sR~~~-al~~ 96 (218)
.+|.+++++|| +++|.|+|+++++++. + +.+ . ++.+....... .+....+.+. ...+ .|+.... .+.+
T Consensus 216 ~~D~~~~s~~K-~~gp~G~G~l~~~~~~-~-~~~--~-~~~~g~~~~~~--~~~~~~~~~~~~~~r~e~GT~~~~~~~~l 287 (406)
T PRK09295 216 DCDFYVFSGHK-LYGPTGIGILYVKEAL-L-QEM--P-PWEGGGSMIAT--VSLTEGTTWAKAPWRFEAGTPNTGGIIGL 287 (406)
T ss_pred CCCEEEeehhh-ccCCCCcEEEEEchHh-H-hhC--C-CcccCCceeee--eecCCccccCCchhhcCCCCccHHHHHHH
Confidence 58999999999 6679999999998763 2 222 2 22222110000 0000000000 0111 1233222 2456
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceeEEEEecCCCcch-HHHhhc--eeecce------
Q 041549 97 WTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP-RKCALVCFRLKPKRESD-GSELNQ--LSLTQA------ 166 (218)
Q Consensus 97 w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-~~~~iV~Fr~~~~~~~~-~~~Ln~--~~vs~~------ 166 (218)
..+++.+-..|++++.++..++++++.+.|+++++++++.+ ...++|+|.+++.+.++ ...|.+ +.+...
T Consensus 288 ~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~ 367 (406)
T PRK09295 288 GAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMP 367 (406)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEECCcCHHHHHHHHHhCCeEEeccccchHH
Confidence 66666655555666666667899999999999999999975 35789999987644333 344544 223210
Q ss_pred ---EECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHH
Q 041549 167 ---TLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 167 ---~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~ 200 (218)
..+...++|+|++ +++|++|||.+++.|+++..
T Consensus 368 ~~~~~~~~~~iRiS~~-~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 368 LMAYYNVPAMCRASLA-MYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred HHHHHCCCCEEEEEcc-CCCCHHHHHHHHHHHHHHHH
Confidence 0111247999995 89999999999999998754
No 25
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.32 E-value=5.8e-11 Score=105.94 Aligned_cols=174 Identities=14% Similarity=0.139 Sum_probs=106.8
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCcccc-CCCCCc-hhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIA-LSRRFK-ALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~-~sR~~~-al~~w~ 98 (218)
++|++++++|||+ +|.|+|++++++.. + +.+. +.+.+....... ..+. ..+....+.++ ++.... .+.++.
T Consensus 211 ~~d~~~~s~~K~~-gp~G~g~l~~~~~~-~-~~~~--~~~~g~~~~~~~-~~~~-~~~~~~~~~~~~gt~~~~~~~al~~ 283 (403)
T TIGR01979 211 DCDFYVFSGHKMY-GPTGIGVLYGKEEL-L-EQMP--PFLGGGEMIAEV-SFEE-TTYNEAPHKFEAGTPNIAGVIGLGA 283 (403)
T ss_pred CCCEEEEeccccc-CCCCceEEEEchHH-H-hcCC--CeecCCCceeec-ccCc-cccCCChhhcCCCCccHHHHHHHHH
Confidence 5899999999975 69999999998652 2 2321 111111000000 0000 00000001121 222222 345666
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC----CceeEEEEecCCCcc-hHHHhhc--eeecce-----
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR----KCALVCFRLKPKRES-DGSELNQ--LSLTQA----- 166 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~----~~~iV~Fr~~~~~~~-~~~~Ln~--~~vs~~----- 166 (218)
+++.+...|++++.++..++++++.+.|+++++++++.|+ ..++++|++++.+.. ....|.+ +.+...
T Consensus 284 al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~v~~g~~~~~ 363 (403)
T TIGR01979 284 AIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEGVHPHDVGTILDEEGIAVRSGHHCAQ 363 (403)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCCcCHHHHHHHHhhCCEEEcchhhhhH
Confidence 7776666667777788889999999999999999998754 378999998654332 2344444 223210
Q ss_pred ----EECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 167 ----TLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 167 ----~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
..+...++|++++ +++|++||+++++.|+++.+.+
T Consensus 364 ~~~~~~~~~~~iRiS~~-~~~t~~di~~l~~~l~~~~~~~ 402 (403)
T TIGR01979 364 PLMRRFGVPATCRASFY-IYNTEEDIDALVEALKKVRKFF 402 (403)
T ss_pred HHHHHhCCCCEEEEEec-cCCCHHHHHHHHHHHHHHHHHh
Confidence 0111357999985 8999999999999999876654
No 26
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.32 E-value=1.5e-11 Score=119.06 Aligned_cols=171 Identities=15% Similarity=0.109 Sum_probs=101.0
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCC-CCCCCCCCccCCcCccc-cCCCCCch-hHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPAS-STSTNVAPVIDYKDWQI-ALSRRFKA-LKLW 97 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~-~~~~~~~~~~~~~~~tl-~~sR~~~a-l~~w 97 (218)
++|++++++|||+++|.|+|+||+|++.. +. ..|.|.+...... .+........+.....+ .|+..+.+ +.+-
T Consensus 252 ~~Dfl~~S~HK~~GgP~G~G~L~vr~~~~--~~--l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~ 327 (805)
T PLN02724 252 PADFVVVSFYKIFGYPTGLGALLVRRDAA--KL--LKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALR 327 (805)
T ss_pred CCCEEEEecceeccCCCCceEEEEehhhh--hh--hcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHH
Confidence 58999999999999999999999997642 22 2334443321000 00000000000000111 12333222 3344
Q ss_pred HHHHH---hcHHHHHHHHHHHHHHHHHHHHHHhcCC------CeEEecCC--------CceeEEEEecCCCcc-----hH
Q 041549 98 TVIRK---HGYSGLMYHIRSDVNMAKRFEAMVAKDE------RFETVEPR--------KCALVCFRLKPKRES-----DG 155 (218)
Q Consensus 98 ~~l~~---~G~~g~~~~i~~~~~la~~l~~~L~~~~------~~el~~~~--------~~~iV~Fr~~~~~~~-----~~ 155 (218)
.+++. +|.+.++++ ..+|++++.+.|++++ +++++.+. ..+||+|.+.+.+.. ++
T Consensus 328 aal~~l~~ig~~~I~~~---~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v 404 (805)
T PLN02724 328 HGFKLLNRLTISAIAMH---TWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREV 404 (805)
T ss_pred HHHHHHHHhChHHHHHH---HHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHH
Confidence 44444 455555554 4589999999999886 58888642 578999999876422 23
Q ss_pred HHhhc---------eeecce----------------------------EECC--EEEEEEecCCCCCcHHHHHHHHHHHH
Q 041549 156 SELNQ---------LSLTQA----------------------------TLGG--VYVIRCSIGTTLTQDRHIDDLRKLIQ 196 (218)
Q Consensus 156 ~~Ln~---------~~vs~~----------------------------~~~g--~~~lR~~~~n~~tt~~di~~l~~~l~ 196 (218)
..|.. .++.+. .+.+ .+++|+|++ +++|.+|||.|++.|+
T Consensus 405 ~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g-~ynt~eDvd~lv~~l~ 483 (805)
T PLN02724 405 EKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFG-YMSTFEDCQKFIDFII 483 (805)
T ss_pred HHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcC-ccCCHHHHHHHHHHHH
Confidence 33422 111110 1112 278999996 7999999999999999
Q ss_pred HHH
Q 041549 197 EKA 199 (218)
Q Consensus 197 ~~~ 199 (218)
+.-
T Consensus 484 ~~~ 486 (805)
T PLN02724 484 SSF 486 (805)
T ss_pred HHh
Confidence 864
No 27
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.32 E-value=2.5e-11 Score=118.70 Aligned_cols=167 Identities=15% Similarity=0.075 Sum_probs=107.2
Q ss_pred CCCCCCeeeecccccCCCcccee-----EEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCC-
Q 041549 18 GVELADSVSLNPHKWFLTNMDCG-----CLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRF- 91 (218)
Q Consensus 18 gi~~aDSi~~d~HK~l~~P~~~g-----~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~- 91 (218)
|--+||++++|+|||+++|+|+| ++++|+. +...+.... +.. +.. -...+..++.++
T Consensus 690 g~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~--l~p~lpg~~--v~~-~~~------------~~~~g~v~ta~~g 752 (954)
T PRK05367 690 GDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAH--LAPFLPGHP--VQI-AGG------------ETGIGAVSAAPFG 752 (954)
T ss_pred hhcCCCEEEecCcccCCCCcCCCCCceEEEeeccc--ccccCCCCc--cCc-CCC------------CCCcCcchhHHHH
Confidence 55679999999999999999855 9999853 222222111 000 000 000112222222
Q ss_pred ---chhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec--C--CCceeEEEEecC--C----Ccc-hHHH
Q 041549 92 ---KALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE--P--RKCALVCFRLKP--K----RES-DGSE 157 (218)
Q Consensus 92 ---~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~--~--~~~~iV~Fr~~~--~----~~~-~~~~ 157 (218)
.+++.|+-++.+|.+|++++.+.++.+|+|++++|++. +++.. + +...=++|++.+ . ..+ ..++
T Consensus 753 ~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~--~~~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~kr 830 (954)
T PRK05367 753 SASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH--YPVLYTGANGRVAHECILDLRPLKESTGITVDDIAKR 830 (954)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh--cCccccCCCCCcccceEEEeecccccCCCCHHHHHHH
Confidence 34679999999999999999999999999999999874 44432 2 223334454432 1 111 2344
Q ss_pred hhc-eeecceE-ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 158 LNQ-LSLTQAT-LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 158 Ln~-~~vs~~~-~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
|.+ ++..++. +.....++++++ .+++.+|||+|++.|..+..++.+
T Consensus 831 L~d~G~~~~t~~~pv~~~l~i~pt-E~~s~~elDr~~~al~~i~~e~~~ 878 (954)
T PRK05367 831 LIDYGFHAPTMSFPVAGTLMVEPT-ESESKAELDRFCDAMIAIRAEIDE 878 (954)
T ss_pred HHHCCCeEeecCCccCCEEEEEee-ecCCHHHHHHHHHHHHHHHHHHHH
Confidence 544 3333321 112346999985 699999999999999999988876
No 28
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.31 E-value=6.9e-11 Score=114.61 Aligned_cols=169 Identities=15% Similarity=0.109 Sum_probs=115.8
Q ss_pred CCCCCCeeeecccccCCCccce-----eEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCc
Q 041549 18 GVELADSVSLNPHKWFLTNMDC-----GCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK 92 (218)
Q Consensus 18 gi~~aDSi~~d~HK~l~~P~~~-----g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~ 92 (218)
|--+||++.+|.||++++|.|+ |++.+|+. +...+. ... +...... . +.. .+.+...++.+.
T Consensus 678 g~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~--L~~~lP-g~~-v~~t~d~-~------gre--q~Iga~s~~~~g 744 (939)
T TIGR00461 678 GDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSH--LIPFLP-KHD-VVSMITG-I------GGS--KSIGSVSAAPYG 744 (939)
T ss_pred cccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhh--chhhcC-CCc-ccccccC-C------CCc--cccccccccccC
Confidence 6778999999999999977777 99999975 322222 222 2211000 0 100 011234445555
Q ss_pred h----hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC----CceeEEEEecCCC------cc-hHHH
Q 041549 93 A----LKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR----KCALVCFRLKPKR------ES-DGSE 157 (218)
Q Consensus 93 a----l~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~----~~~iV~Fr~~~~~------~~-~~~~ 157 (218)
+ ++.|+-|+.+|.+|+++..+.++.+|+|++++|++ +++++.+. ...=++|++++.. .+ ..++
T Consensus 745 ~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakr 822 (939)
T TIGR00461 745 SASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKR 822 (939)
T ss_pred cHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccchhhhcCCCHHHHHHH
Confidence 4 89999999999999999999999999999999987 66888753 3445888887521 11 2344
Q ss_pred hhc-eeecce---EECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 158 LNQ-LSLTQA---TLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 158 Ln~-~~vs~~---~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
|.+ ++..++ .+.|...++++- .++.+|||++++.+.++..++..
T Consensus 823 L~d~G~hapt~~~pv~g~lmiepTE---~eskeelD~f~~al~~I~~e~~~ 870 (939)
T TIGR00461 823 LQDYGFHAPTLSFPVPGTLMVEPTE---SESLEELDRFCDAMIAIKEEINA 870 (939)
T ss_pred HHhCCeeccccCCccCCeEEEEeec---cCCHHHHHHHHHHHHHHHHHHHH
Confidence 544 443333 234555677553 88999999999999999988865
No 29
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.28 E-value=2.1e-11 Score=108.59 Aligned_cols=170 Identities=9% Similarity=0.017 Sum_probs=103.6
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCC------cccccccCCCCCCCCCCCCccCCcCccccCCCCC-c
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTK------SDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRF-K 92 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~------~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~-~ 92 (218)
+.+|.+.++.|||+++|.|+|+++++++.. +.+... +.|+.... . ........+++-++ -
T Consensus 183 ~~iD~~~~s~~K~l~~P~G~g~l~v~~~~~--~~~~p~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~t~~tp 249 (378)
T PRK03080 183 SKLDVYTFSWQKVLGGEGGHGMAILSPRAV--ERLESYTPARPIPKFFRLTK-G----------GKAIENSFKGQTINTP 249 (378)
T ss_pred HHCcEEEEehhhhCCCCCceEEEEECHHHH--HhhhcccCCCCCchhheecc-c----------hHHhhhhhcCCcccCc
Confidence 447999999999999999999999998743 222211 11211000 0 00000001111111 1
Q ss_pred h---h-HHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-C--Cc-eeEEEEecC---C-CcchHHHh-
Q 041549 93 A---L-KLWTVIRKHGYS-GLMYHIRSDVNMAKRFEAMVAKDERFETVEP-R--KC-ALVCFRLKP---K-RESDGSEL- 158 (218)
Q Consensus 93 a---l-~~w~~l~~~G~~-g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-~--~~-~iV~Fr~~~---~-~~~~~~~L- 158 (218)
+ + .+-.+++.+-.+ |++++.++..++++++.+.|++.++++++.+ + .+ .+++|++++ . +.+....+
T Consensus 250 ~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~~~~~~~~~~~~~l~ 329 (378)
T PRK03080 250 SMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVDAQAAVDAAAVAKLL 329 (378)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCccEEEEEcCCchHHHHHHHHHHHH
Confidence 1 1 223466666665 7888888888999999999999987888752 2 34 589999875 1 12223333
Q ss_pred hce-eecceEE-CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 159 NQL-SLTQATL-GGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 159 n~~-~vs~~~~-~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
.+. .+..... .....+|++++ .+++++||+.+++.|+++..++.
T Consensus 330 ~~~i~v~~g~~~~~~~~vRis~~-~~~t~~di~~l~~al~~~~~~~~ 375 (378)
T PRK03080 330 RENGAVDIEPYRDAPNGLRIWCG-PTVEPADVEALTPWLDWAFERLK 375 (378)
T ss_pred HcCCeeccccccCCCCcEEEecC-CCCCHHHHHHHHHHHHHHHHHHh
Confidence 332 2221111 11357999975 79999999999999998766554
No 30
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.24 E-value=4.4e-10 Score=99.71 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=101.0
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchh-HHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKAL-KLWTV 99 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al-~~w~~ 99 (218)
++|++++++||| ++|.|+|++++|+...+. +.+.+.... .. .. .++-...++ .+-.+
T Consensus 192 ~~D~~~~s~~K~-~gp~G~g~l~vr~~~~~~------p~~~g~~~~---------~~--~~----~gt~~~~~~~al~~a 249 (382)
T TIGR03403 192 GVDFLSFSAHKF-HGPKGVGGLYIRKGVELT------PLFHGGEHM---------GG--RR----SGTLNVPYIVAMGEA 249 (382)
T ss_pred CCCEEEEcchhh-CCCCceEEEEECCCCCCC------CcccCCCCC---------CC--cc----cCCcChHHHHHHHHH
Confidence 689999999998 679999999999874321 111110000 00 00 111111222 33344
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--C-ceeEEEEecCCCcc-hHHHhhc--eeecc------eE
Q 041549 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR--K-CALVCFRLKPKRES-DGSELNQ--LSLTQ------AT 167 (218)
Q Consensus 100 l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~--~-~~iV~Fr~~~~~~~-~~~~Ln~--~~vs~------~~ 167 (218)
++.. .+.++...++..++++++.+.|+++|+++++.++ . .++++|.+.+.+.+ ....|.+ +.++. ..
T Consensus 250 l~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~c~~~~ 328 (382)
T TIGR03403 250 MRLA-NEYLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGVEGEAMLWDLNKAGIAASTGSACASED 328 (382)
T ss_pred HHHH-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCEEEEchhccCCCC
Confidence 4433 3346677777789999999999999999999753 3 35888988754432 2344544 22221 00
Q ss_pred ---------EC-----CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 168 ---------LG-----GVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 168 ---------~~-----g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
++ ....+|++++ +++|++|||++++.|+++..++.
T Consensus 329 ~~~~~v~~~~g~~~~~~~~~iR~s~~-~~~t~~did~~~~~l~~~~~~~~ 377 (382)
T TIGR03403 329 LEANPVMVAIGADKELAHTAIRLSLS-RFTTEEEIDYTIEVFKKAVQRLR 377 (382)
T ss_pred CCcCHHHHHcCCChHHhCeeEEEECC-CCCCHHHHHHHHHHHHHHHHHHH
Confidence 11 1257999985 79999999999999999877653
No 31
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.22 E-value=4.7e-10 Score=99.37 Aligned_cols=158 Identities=14% Similarity=0.093 Sum_probs=99.2
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCch-hHHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKA-LKLWTV 99 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~a-l~~w~~ 99 (218)
.+|++++++|| +++|.|+|++++|+...+ .|.+.+..... ... .++-...+ +.+-.+
T Consensus 188 ~~D~~~~s~~K-~~gp~G~g~l~v~~~~~~------~p~~~g~~~~~---------~~~------~gt~~~~~~~~l~~a 245 (379)
T TIGR03402 188 NIDMLSLSGHK-LHGPKGVGALYIRKGTRF------RPLLRGGHQER---------GRR------AGTENVPGIVGLGKA 245 (379)
T ss_pred CCCEEEEcHHH-cCCCCceEEEEECCCCCC------CCcccCCccCC---------CcC------CCCccHHHHHHHHHH
Confidence 68999999999 778999999999876422 12111111000 000 11111111 122223
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCC---ceeEEEEecCCCcch-HHHhhc--eeecceE-----
Q 041549 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAK-DERFETVEPRK---CALVCFRLKPKRESD-GSELNQ--LSLTQAT----- 167 (218)
Q Consensus 100 l~~~G~~g~~~~i~~~~~la~~l~~~L~~-~~~~el~~~~~---~~iV~Fr~~~~~~~~-~~~Ln~--~~vs~~~----- 167 (218)
++. ..++++++.++..++.+++.+.|++ +|++++..++. .++++|.+.+.+.+. ...|.+ +.++...
T Consensus 246 l~~-~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~~ 324 (379)
T TIGR03402 246 AEL-ATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICASSGSACTSG 324 (379)
T ss_pred HHH-HHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEEchhhcCCC
Confidence 332 3456777777888999999999986 89999987542 368888887554432 344544 2222100
Q ss_pred ----------E-----CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 168 ----------L-----GGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 168 ----------~-----~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
+ .....+|+|+ +++||++|||++++.|+++..++
T Consensus 325 ~~~~~~~~~~lg~~~~~~~~~vR~S~-~~~~t~~di~~~~~~l~~~~~~~ 373 (379)
T TIGR03402 325 SLEPSHVLRAMGVPHTAAHGSIRFSL-SRYNTEEDIDYVLEVLPPIIARL 373 (379)
T ss_pred CCCcCHHHHHcCCChhhcCceEEEEc-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 0 0125799999 58999999999999999987664
No 32
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.21 E-value=5.8e-11 Score=104.94 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=98.4
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcC-C--cccccccCCCCCCCCCCCCccCCcCcccc-CCCCCc-hhH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST-K--SDIMRNRSPASSTSTNVAPVIDYKDWQIA-LSRRFK-ALK 95 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~-~--~~yl~~~~~~~~~~~~~~~~~~~~~~tl~-~sR~~~-al~ 95 (218)
++|.+++++|| +++|.|+|+++++++.. +.+.. . ..|....... . ..+....+.++ |+...- .+.
T Consensus 191 ~~D~~~~s~~K-l~gp~G~g~l~v~~~~~--~~~~p~~~~~~~~~~~~~~-~------~~~~~~~~~~~~GT~~~~~~~~ 260 (371)
T PF00266_consen 191 GADFLVFSSHK-LGGPPGLGFLYVRPEAI--ERLRPAKPGGGYLDFPSLQ-E------YGLADDARRFEGGTPNVPAIYA 260 (371)
T ss_dssp TESEEEEESTS-TTSSSTEEEEEEEHHHH--HHHHTSSSSSSTTTHHHHH-H------HCHHSTTTGSSSSS--HHHHHH
T ss_pred ccceeeecccc-cCCCCchhhheehhhhh--hccccccccccccccccch-h------cccccccccccccceeeehhhh
Confidence 68999999999 99999999999999743 22211 1 1111000000 0 00000001111 222222 233
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC----CCceeEEEEecCCCcch-HHHhhc--eeecceE-
Q 041549 96 LWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP----RKCALVCFRLKPKRESD-GSELNQ--LSLTQAT- 167 (218)
Q Consensus 96 ~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~----~~~~iV~Fr~~~~~~~~-~~~Ln~--~~vs~~~- 167 (218)
+..+++.+...|+.++.++..++++++.+.|++.++++++.+ ...++++|.+.+.+.+. ...|.+ +.++...
T Consensus 261 l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~~~I~~~~G~~ 340 (371)
T PF00266_consen 261 LNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNLPGSDADDVVKYLEERGIAVSTGSA 340 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEETTSSHHHHHHHHHHHTEEEEESTT
T ss_pred HHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEeecCCCHHHHHHHHhhcCEEEeccCc
Confidence 445667776778888888888999999999999999999763 36689999997665433 344544 2332100
Q ss_pred --------ECCEEEEEEecCCCCCcHHHHHHH
Q 041549 168 --------LGGVYVIRCSIGTTLTQDRHIDDL 191 (218)
Q Consensus 168 --------~~g~~~lR~~~~n~~tt~~di~~l 191 (218)
.+-..++|+++ ++++|++|||+|
T Consensus 341 ~~~~~~~~~~~~~~iRvS~-~~~nt~~dv~~l 371 (371)
T PF00266_consen 341 CAGPSLDILGMGGVIRVSL-HYYNTEEDVDRL 371 (371)
T ss_dssp TCHHHHHHHHTTTEEEEE--GTTSSHHHHHHH
T ss_pred ccHHHHHHhCCCCEEEEec-cCCCCHHHHhhC
Confidence 00015799998 589999999986
No 33
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.20 E-value=8e-11 Score=104.70 Aligned_cols=102 Identities=15% Similarity=-0.025 Sum_probs=72.2
Q ss_pred hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-C--c-chHHHhhc-eeecce-
Q 041549 93 ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-R--E-SDGSELNQ-LSLTQA- 166 (218)
Q Consensus 93 al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~--~-~~~~~Ln~-~~vs~~- 166 (218)
+...|..++.++.+|++++.++..++++++.+.|++.+.......+..++++|++.+. + . +..+.|.+ .+....
T Consensus 291 ~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~ 370 (398)
T cd00613 291 ALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTM 370 (398)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhhhcCcccccc
Confidence 3567777888999999999999999999999999998665533335567788987642 1 1 22333433 222221
Q ss_pred EECCEEEEEEecCCCCCcHHHHHHHHHHH
Q 041549 167 TLGGVYVIRCSIGTTLTQDRHIDDLRKLI 195 (218)
Q Consensus 167 ~~~g~~~lR~~~~n~~tt~~di~~l~~~l 195 (218)
...+...||+++ +.++|++|||++++.|
T Consensus 371 ~~~~~~~lRis~-~~~~t~edid~~~~~L 398 (398)
T cd00613 371 YLPVDGTLMIEP-TETETKEELDALLEAL 398 (398)
T ss_pred ccCCCCeEEEEc-CCCCCHHHHHHHHHhC
Confidence 123446899999 5899999999999864
No 34
>PLN02651 cysteine desulfurase
Probab=99.19 E-value=3.4e-10 Score=99.97 Aligned_cols=147 Identities=13% Similarity=0.099 Sum_probs=92.3
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCch-hHHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKA-LKLWTV 99 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~a-l~~w~~ 99 (218)
++|++++++||| ++|.|+|++|+|++.. .. ..+.+.+.... . .+ -.|+....+ +.+-.+
T Consensus 190 ~~D~~~~s~hK~-~gp~G~g~l~v~~~~~--~~--l~p~~~g~~~~-------------~-~~-~~GT~~~~~~~~l~~a 249 (364)
T PLN02651 190 GVDLMSISGHKI-YGPKGVGALYVRRRPR--VR--LEPLMSGGGQE-------------R-GR-RSGTENTPLVVGLGAA 249 (364)
T ss_pred CCCEEEechhhh-CCCCceEEEEEcCCCC--CC--CCccccCCCcc-------------C-Cc-cCCCccHHHHHHHHHH
Confidence 489999999998 7999999999998743 12 22222221100 0 01 123333322 344445
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecC--CC---ceeEEEEecCCCcc-hHHHhhceeecc------e
Q 041549 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAK-DERFETVEP--RK---CALVCFRLKPKRES-DGSELNQLSLTQ------A 166 (218)
Q Consensus 100 l~~~G~~g~~~~i~~~~~la~~l~~~L~~-~~~~el~~~--~~---~~iV~Fr~~~~~~~-~~~~Ln~~~vs~------~ 166 (218)
++.+-. +.+++.++..++++++.+.|++ .|+++++.| +. .++++|.+++.+.+ ..+.|..+.++. .
T Consensus 250 l~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~i~v~~g~~c~~~ 328 (364)
T PLN02651 250 CELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKEVAVSSGSACTSA 328 (364)
T ss_pred HHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCCEEEEchhhcCCC
Confidence 555533 3466677778999999999986 689999985 22 46999999765543 345555422210 0
Q ss_pred ---------EEC-----CEEEEEEecCCCCCcHHHHH
Q 041549 167 ---------TLG-----GVYVIRCSIGTTLTQDRHID 189 (218)
Q Consensus 167 ---------~~~-----g~~~lR~~~~n~~tt~~di~ 189 (218)
.++ ...++|+|++ ++||++|||
T Consensus 329 ~~~~~~~~~~~g~~~~~~~~~vR~S~~-~~~t~~did 364 (364)
T PLN02651 329 SLEPSYVLRALGVPEEMAHGSLRLGVG-RFTTEEEVD 364 (364)
T ss_pred CCCcCHHHHHcCCChHHhCceEEEEcC-CCCCHHHcC
Confidence 011 1358999995 899999985
No 35
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.18 E-value=5.1e-10 Score=98.72 Aligned_cols=162 Identities=15% Similarity=0.154 Sum_probs=104.2
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCcc-----c-cCCCC-Cch
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQ-----I-ALSRR-FKA 93 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~t-----l-~~sR~-~~a 93 (218)
++|++++++|||+.. .++|++++++.. . +.+.. +......... ...+...|. + .++.. ...
T Consensus 191 ~~d~~~~s~~K~~~~-~g~g~~~~~~~~-~-~~~~~---~~~g~~~~~~------~~~~~~~~~~~~~~~~~~t~~~~~~ 258 (373)
T cd06453 191 GCDFLAFSGHKMLGP-TGIGVLYGKEEL-L-EEMPP---YGGGGEMIEE------VSFEETTYADLPHKFEAGTPNIAGA 258 (373)
T ss_pred CCCEEEeccccccCC-CCcEEEEEchHH-h-hcCCC---eecCCCcccc------ccccccccCCCccccCCCCCCHHHH
Confidence 689999999999887 889999887653 2 22221 2111000000 000011111 1 11222 135
Q ss_pred hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceeEEEEecCCCcc-hHHHhhc--eeecceE-
Q 041549 94 LKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKCALVCFRLKPKRES-DGSELNQ--LSLTQAT- 167 (218)
Q Consensus 94 l~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~~iV~Fr~~~~~~~-~~~~Ln~--~~vs~~~- 167 (218)
+.+|.+++.++.+|+++++++..++++++.+.|+++|+++++.+ ...++++|++++.+.+ ..+.|.+ .++....
T Consensus 259 ~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~gi~i~~g~~ 338 (373)
T cd06453 259 IGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLEGIHPHDVATILDQYGIAVRAGHH 338 (373)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEECCcCHHHHHHHHHHCCEEeccCcc
Confidence 67888899998889999999999999999999999999999854 3567999998654332 2344443 2332111
Q ss_pred --------ECCEEEEEEecCCCCCcHHHHHHHHHHH
Q 041549 168 --------LGGVYVIRCSIGTTLTQDRHIDDLRKLI 195 (218)
Q Consensus 168 --------~~g~~~lR~~~~n~~tt~~di~~l~~~l 195 (218)
.+...++|++++ +++|++|||++++.|
T Consensus 339 ~~~~~~~~~~~~~~iRis~~-~~~t~~di~~~~~~l 373 (373)
T cd06453 339 CAQPLMRRLGVPGTVRASFG-LYNTEEEIDALVEAL 373 (373)
T ss_pred chhHHHHHhCCCCeEEEEec-CCCCHHHHHHHHhhC
Confidence 112358999995 899999999999864
No 36
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.11 E-value=2.8e-09 Score=95.48 Aligned_cols=159 Identities=19% Similarity=0.164 Sum_probs=95.3
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCc-hhHHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK-ALKLWTV 99 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~-al~~w~~ 99 (218)
.+|++++++||+ ++|.|+|+++++++... . ..+.+.+. .... .+ -.++-... .+.+-.+
T Consensus 194 ~~D~~~~s~~K~-~gp~G~G~l~~~~~~~~--~--~~~~~~g~-------------~~~~-~~-~~gt~~~~~~~al~~a 253 (402)
T TIGR02006 194 KVDLMSISGHKI-YGPKGIGALYVRRKPRV--R--LEALIHGG-------------GHER-GM-RSGTLPTHQIVGMGEA 253 (402)
T ss_pred CCCEEEEehhhh-cCCCceEEEEEccCCCC--C--CCceecCC-------------CccC-Cc-cCCCccHHHHHHHHHH
Confidence 689999999996 57999999999976432 1 11111110 0000 00 01111111 1223234
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--Cc---eeEEEEecCCCcchHHHhhcee------ecceE-
Q 041549 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR--KC---ALVCFRLKPKRESDGSELNQLS------LTQAT- 167 (218)
Q Consensus 100 l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~--~~---~iV~Fr~~~~~~~~~~~Ln~~~------vs~~~- 167 (218)
++.+ .+++.++.++..++++++.+.|++.++++++.++ .. .+|+|...+. .+....|+... +++..
T Consensus 254 l~~~-~~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~~~-~~~~~~l~~i~v~~G~~c~~~~~ 331 (402)
T TIGR02006 254 FRIA-KEEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYVEG-ESLIMALKDLAVSSGSACTSASL 331 (402)
T ss_pred HHHH-HHhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCcCH-HHHHHhcCCEEEechhhcCCCCC
Confidence 4433 2457777778889999999999999999888532 22 2466663321 12233343311 21110
Q ss_pred ----------EC---CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 168 ----------LG---GVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 168 ----------~~---g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
+. ...++|+|++ ++||++|||++++.|+++..++
T Consensus 332 ~~~~~l~~lg~~~~~~~~~vR~S~~-~~~t~edid~l~~~l~~~~~~~ 378 (402)
T TIGR02006 332 EPSYVLRALGINDELAHSSIRFTIG-RFTTEEEIDYAVKLVKSAIDKL 378 (402)
T ss_pred CccHHHHHcCCChhhcCceEEEEec-CCCCHHHHHHHHHHHHHHHHHH
Confidence 00 1258999995 7999999999999999988775
No 37
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.07 E-value=2e-09 Score=105.58 Aligned_cols=164 Identities=14% Similarity=0.010 Sum_probs=106.5
Q ss_pred CCCCCCeeeecccccCCCccc-----eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCc
Q 041549 18 GVELADSVSLNPHKWFLTNMD-----CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK 92 (218)
Q Consensus 18 gi~~aDSi~~d~HK~l~~P~~-----~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~ 92 (218)
|=-+||.+..+.|||+ +|++ +|+|++|++. .+.+ .+..++..... .+. ..+-+.-.+-+..+|++
T Consensus 254 ge~GaDi~vgs~qkfg-~P~g~GGP~aGflavr~~~--~r~l--pgrivG~s~d~-~g~----~~~~lalqtReqhiRre 323 (954)
T PRK05367 254 GEMGADIAVGSAQRFG-VPMGFGGPHAAYFAVRDAY--KRSM--PGRIVGVSVDA-AGN----PALRLALQTREQHIRRE 323 (954)
T ss_pred hhcCCCEEEeeCcccC-CCCCCCCCCEEEEEECHHH--HhhC--CCCeeeeeccc-CCC----ccccccccccccccccc
Confidence 4558999999999996 6666 9999999863 2333 33455542110 100 01111111222233332
Q ss_pred -h------------hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcc-hHHHh
Q 041549 93 -A------------LKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRES-DGSEL 158 (218)
Q Consensus 93 -a------------l~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~-~~~~L 158 (218)
| +..++-+.++|.+|++++-++...++.++++.|++ +++++..++.+++++|+.. .+.+ ..++|
T Consensus 324 kaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~-~G~~~~~~~~f~~~~~~~~-~~~~~i~~~l 401 (954)
T PRK05367 324 KATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRA-LGLEVVHDSFFDTLTVEVG-GDAAAVLARA 401 (954)
T ss_pred ccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-cCcccCCCCCCCeEEEeCC-CCHHHHHHHH
Confidence 1 12222246789999999999999999999999987 6999998888899999974 2322 23444
Q ss_pred hc-eeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHH
Q 041549 159 NQ-LSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQ 196 (218)
Q Consensus 159 n~-~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~ 196 (218)
.+ .+...... ...+|+|+ +.++|++|||.+++.+.
T Consensus 402 ~~~gi~~~~~~--~~~l~is~-~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 402 LAAGINLRRVD--DDHVGISL-DETTTREDLAALLAVFG 437 (954)
T ss_pred HHCCceecccc--CCEEEEEe-cccCCHHHHHHHHHHHc
Confidence 44 33322221 23599999 58999999999999997
No 38
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.05 E-value=1.2e-09 Score=96.51 Aligned_cols=165 Identities=11% Similarity=-0.001 Sum_probs=103.3
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcC-CcccccccCCCCCCCCCCCCccCCcCccccCCCCCc-hhHH
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST-KSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK-ALKL 96 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~-al~~ 96 (218)
++..|.+.+..||+++ |.|.|+++++++.. . .+.. .+.|..... . . ...+..++=... ...+
T Consensus 173 ~~~~d~~~~ssqK~lg-P~Glg~l~~s~~~~-~-~~~~~~~~~~~~~~-~----------~--~~~~~~~Tp~~~~i~al 236 (349)
T TIGR01364 173 VSKFGLIYAGAQKNIG-PAGLTVVIVRKDLL-G-RASRITPSMLNYKI-H----------A--ENDSMYNTPPTFAIYVS 236 (349)
T ss_pred HHHccEEEEecccccC-CCceEEEEECHHHH-h-hcccCCCCcchHHH-H----------H--hcCCCCCCCcHHHHHHH
Confidence 3446799999999875 99999999998854 2 2221 112221100 0 0 000011111111 2345
Q ss_pred HHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CC--Cc-eeEEEEecCCC--cchHHHhhc-eeecceEE
Q 041549 97 WTVIRKHGYS-GLMYHIRSDVNMAKRFEAMVAKDERFETVE-PR--KC-ALVCFRLKPKR--ESDGSELNQ-LSLTQATL 168 (218)
Q Consensus 97 w~~l~~~G~~-g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~~--~~-~iV~Fr~~~~~--~~~~~~Ln~-~~vs~~~~ 168 (218)
-.+++.+-.+ |+.++.++..++++++.+.|++.+++.... ++ .+ .+++|.+++.. .+..+.+.+ ..+.....
T Consensus 237 ~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~ 316 (349)
T TIGR01364 237 GLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEELEKRFLKEAEERGLVSLKGH 316 (349)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChhHhHHHHHHHHHCCCcccCCc
Confidence 5577777777 699999999999999999999998876653 22 45 57899987541 111133322 33333222
Q ss_pred CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHH
Q 041549 169 GGVYVIRCSIGTTLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 169 ~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~ 200 (218)
+....+|+|+. +++|.+|||.|++.|+++..
T Consensus 317 ~~~g~vRvS~~-~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 317 RSVGGMRASIY-NAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred cccCeeEEECc-CCCCHHHHHHHHHHHHHHHH
Confidence 11247999995 69999999999999998643
No 39
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=99.03 E-value=2.8e-09 Score=97.09 Aligned_cols=159 Identities=14% Similarity=0.130 Sum_probs=99.4
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCC-chhHHH
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRF-KALKLW 97 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~-~al~~w 97 (218)
+.++|.+++.+|||+++|.| |++++++.. . +.+.. .+... . +. .++|+-.. ....+-
T Consensus 233 ~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~-~-~~l~~---~~~~~------------~--~p--~~~G~~~~~~iaal~ 290 (452)
T PTZ00094 233 FPYADVVTTTTHKSLRGPRS-GLIFYRKKV-K-PDIEN---KINEA------------V--FP--GLQGGPHNHQIAAIA 290 (452)
T ss_pred CCCCcEEEcCCccCCCCCCc-eEEEEeccc-c-hHHHH---hhccc------------c--CC--CCCCCchHHHHHHHH
Confidence 45799999999999999998 888887653 1 11110 00000 0 00 01222111 223444
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC---CCceeEEEEecCCCcc-hHHHhhc--eeecceEE---
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP---RKCALVCFRLKPKRES-DGSELNQ--LSLTQATL--- 168 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~---~~~~iV~Fr~~~~~~~-~~~~Ln~--~~vs~~~~--- 168 (218)
.+++.+-..++.++.++..+++++|.+.|++. +++++.+ ....+|.|...+.+.+ ....|.+ ++++...+
T Consensus 291 ~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~ 369 (452)
T PTZ00094 291 VQLKEVQSPEWKEYAKQVLKNAKALAAALEKR-GYDLVTGGTDNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGD 369 (452)
T ss_pred HHHHHHhChhHHHHHHHHHHHHHHHHHHHHhC-CcEEecCCCCCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCC
Confidence 56666655566666667779999999999885 9998853 2346667776654433 3355654 34432111
Q ss_pred ---CCEEEEEEecCCCCCc----HHHHHHHHHHHHHHHHH
Q 041549 169 ---GGVYVIRCSIGTTLTQ----DRHIDDLRKLIQEKADR 201 (218)
Q Consensus 169 ---~g~~~lR~~~~n~~tt----~~di~~l~~~l~~~~~~ 201 (218)
.....+|++++ .+|+ ++||+++++.|.++...
T Consensus 370 ~~~~~~~~vRis~~-~~tt~g~~~~di~~l~~~l~~~~~~ 408 (452)
T PTZ00094 370 KSALNPSGVRLGTP-ALTTRGAKEKDFKFVADFLDRAVKL 408 (452)
T ss_pred CcCCCCCeEEECCH-HHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 11257999984 6776 99999999999998765
No 40
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=98.99 E-value=6.4e-09 Score=102.01 Aligned_cols=161 Identities=16% Similarity=0.060 Sum_probs=104.9
Q ss_pred CCCCeeeecccccC-----CCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCc-Cc-cccCCCCCc
Q 041549 20 ELADSVSLNPHKWF-----LTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYK-DW-QIALSRRFK 92 (218)
Q Consensus 20 ~~aDSi~~d~HK~l-----~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~-~~-tl~~sR~~~ 92 (218)
=+||.+..+.|||+ ++|. +|+|++|++. .+. ..+..++... +.+ +...+. .+ +-+..+|++
T Consensus 284 ~GADi~vgsgqKwg~P~G~GGP~-aGflavr~~~--~r~--~PgriVG~s~-d~~------g~~~~~l~LqtReqhiRrE 351 (993)
T PLN02414 284 WGADIVVGSAQRFGVPMGYGGPH-AAFLATSQEY--KRL--MPGRIIGVSV-DSS------GKPALRMAMQTREQHIRRD 351 (993)
T ss_pred ccCcEEEECCCccccCCCCCCCC-eeEEEECHHH--Hhh--CCCcccCccc-CCC------CCcccccccccccchhhhc
Confidence 38999999999998 4444 8999999874 232 2223555421 111 111110 00 112223332
Q ss_pred --------hhHHHHHH-----HHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhh
Q 041549 93 --------ALKLWTVI-----RKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELN 159 (218)
Q Consensus 93 --------al~~w~~l-----~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln 159 (218)
...+++++ .++|..|++++-+++.+++.++++.|++ +++++.+++.+++|+|++. ...+..++|.
T Consensus 352 kaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~-~G~~~~~~~~f~~vt~~~~-~~~~v~~~L~ 429 (993)
T PLN02414 352 KATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKK-LGFQVQSLPFFDTVKVKCS-DADAIADAAA 429 (993)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhh-cCCccCCCCCcCeEEEecC-CHHHHHHHHH
Confidence 23444433 4678899998888899999999999988 5899998888999999985 2223344454
Q ss_pred c--eeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 160 Q--LSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 160 ~--~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
+ +.++. +.+ ..+|+|+ +.++|++|||.|++.+...
T Consensus 430 ~~gI~l~~--~~~-~~lrvs~-~e~~T~edId~L~~~l~~~ 466 (993)
T PLN02414 430 KVGINLRV--VDA-NTVTVSF-DETTTLEDVDKLFKVFAGG 466 (993)
T ss_pred HCCCeeEE--ecC-CeEEEEe-eccCCHHHHHHHHHHHccc
Confidence 4 22321 112 3599999 5899999999999999744
No 41
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=98.97 E-value=1.1e-08 Score=91.05 Aligned_cols=155 Identities=12% Similarity=0.100 Sum_probs=95.3
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcC-CcccccccCCCCCCCCCCCCccCCcCccccCCCCCc-hhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST-KSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK-ALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~-al~~w~ 98 (218)
++|.+++++|||++ |. +|+++++++. + +.+.. ...|..... . ..+ -.|++.+. .+.+..
T Consensus 208 ~~d~~~~s~~K~~g-~~-~G~l~~~~~~-~-~~l~~~~~~~~~~~~-----------~---~~~-~~gt~~~~~~~~l~~ 268 (397)
T TIGR01976 208 GADFLTCSAYKFFG-PH-MGILWGRPEL-L-MNLPPYKLTFSYDTG-----------P---ERF-ELGTPQYELLAGVVA 268 (397)
T ss_pred CCCEEEEechhhcC-Cc-eEEEEEcHHH-H-hhCCCccccCccCCC-----------c---chh-cCCCCCHHHHHHHHH
Confidence 68999999999975 53 8999987653 2 22221 111111100 0 001 02344433 233444
Q ss_pred HHHH---hcH-----------HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC----CCceeEEEEecCCCc-chHHHhh
Q 041549 99 VIRK---HGY-----------SGLMYHIRSDVNMAKRFEAMVAKDERFETVEP----RKCALVCFRLKPKRE-SDGSELN 159 (218)
Q Consensus 99 ~l~~---~G~-----------~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~----~~~~iV~Fr~~~~~~-~~~~~Ln 159 (218)
+++. .|. +++++..++..++++++.+.|++.++++++.+ ...+++.|...+.+. +..++|.
T Consensus 269 al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 348 (397)
T TIGR01976 269 AVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLA 348 (397)
T ss_pred HHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCcCHHHHHHHHH
Confidence 4443 341 13677777888999999999999888999864 367899998865433 3345564
Q ss_pred c--eeecce-----------EE-CCEEEEEEecCCCCCcHHHHHHHHHHH
Q 041549 160 Q--LSLTQA-----------TL-GGVYVIRCSIGTTLTQDRHIDDLRKLI 195 (218)
Q Consensus 160 ~--~~vs~~-----------~~-~g~~~lR~~~~n~~tt~~di~~l~~~l 195 (218)
+ +++... .+ ....++|++++ +++|++||+++++.|
T Consensus 349 ~~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~-~~~t~~di~~l~~~l 397 (397)
T TIGR01976 349 DQGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLA-HYNTAEEVDRLLEAL 397 (397)
T ss_pred HCCeEEEeCccchHHHHHHhCCCCCCCeEEEEee-ccCCHHHHHHHHHhC
Confidence 4 333211 01 12357999995 799999999999864
No 42
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=98.95 E-value=3.7e-09 Score=93.35 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=95.7
Q ss_pred CCeeeecccccCCCccceeEEEEeCCcchhhhhcC-CcccccccCCCCCCCCCCCCccCCcCccccCCCCC-chhHHHHH
Q 041549 22 ADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST-KSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRF-KALKLWTV 99 (218)
Q Consensus 22 aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~-~al~~w~~ 99 (218)
.|-.....|||+ +|.|.|++++|++..- .+.. .+.|...... .+... ..++=.. ....+..+
T Consensus 184 ~~~~~ss~~K~l-GP~G~g~l~~~~~~~~--~~~~~~~~~~~~~~~-----------~~~~~--~~~Tpn~~~i~~L~aa 247 (355)
T cd00611 184 FGVIYAGAQKNL-GPAGVTVVIVRKDLLG--KARKITPSMLNYKTH-----------ADNNS--LYNTPPTFAIYMMGLV 247 (355)
T ss_pred hCEEEeeccccc-CCCceEEEEECHHHHh--hcccCCCCcccHHHH-----------HhcCC--CCCCChHHHHHHHHHH
Confidence 343334499976 6999999999887542 2211 1122211000 00000 0111111 13456667
Q ss_pred HHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCeE-EecC--CCc-eeEEEEecCCC-cchH-HHhhc-eeecceEECCE
Q 041549 100 IRKHGYS-GLMYHIRSDVNMAKRFEAMVAKDERFE-TVEP--RKC-ALVCFRLKPKR-ESDG-SELNQ-LSLTQATLGGV 171 (218)
Q Consensus 100 l~~~G~~-g~~~~i~~~~~la~~l~~~L~~~~~~e-l~~~--~~~-~iV~Fr~~~~~-~~~~-~~Ln~-~~vs~~~~~g~ 171 (218)
++.+-.+ |++++.++..++++++.+.|+++|++. ...+ ..+ .+|+|++.+.. .... +.+.+ +++.+...+..
T Consensus 248 l~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~~l~~~~~~~~~r~G~~~~~~~~~~ 327 (355)
T cd00611 248 LKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKEELEKEFLKEAEAAGMIGLKGHRSV 327 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCChhhhHHHHHHHHHCCCcccCCCccc
Confidence 7877666 688888888999999999999998863 2222 245 46999987640 1111 22222 33332221213
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
..+|+|+. +++|++|||.|++.|+++
T Consensus 328 g~vR~S~~-~~nt~edi~~l~~al~~~ 353 (355)
T cd00611 328 GGIRASIY-NALSLEGVQALADFMKEF 353 (355)
T ss_pred CeEEEEcc-CCCCHHHHHHHHHHHHHH
Confidence 57999995 799999999999999885
No 43
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=98.95 E-value=5.2e-09 Score=94.97 Aligned_cols=108 Identities=13% Similarity=0.204 Sum_probs=79.2
Q ss_pred cccccccCccccccc-cCCC--CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCcc
Q 041549 2 AYRSACICPEFRHYL-NGVE--LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVI 78 (218)
Q Consensus 2 A~Gg~~~~~~~r~~~-~gi~--~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 78 (218)
|||. .++.+++++ .|++ ++|++++|+|||+.+|.++|+++++++... +.+.. .|.+..
T Consensus 243 Ayg~--~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~-~~i~~--~y~g~~-------------- 303 (444)
T TIGR03531 243 AYGL--QSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFI-QEISK--SYPGRA-------------- 303 (444)
T ss_pred cCcC--cChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHH-HHHHH--hccCCC--------------
Confidence 6764 233444444 3543 689999999999999999999999988765 33322 221100
Q ss_pred CCcCccccCCCCCchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC---CeEEecCC
Q 041549 79 DYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDE---RFETVEPR 138 (218)
Q Consensus 79 ~~~~~tl~~sR~~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~---~~el~~~~ 138 (218)
....++++|++++.+|.+|+++++++..++++++.+.|++.. |.+++..|
T Consensus 304 ----------~~s~~~~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~ 356 (444)
T TIGR03531 304 ----------SASPSLDVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDTP 356 (444)
T ss_pred ----------CChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecCC
Confidence 012368899999999999999999999999999999998853 56777543
No 44
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=98.95 E-value=3.7e-09 Score=93.70 Aligned_cols=164 Identities=10% Similarity=-0.027 Sum_probs=101.9
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcC-CcccccccCCCCCCCCCCCCccCCcCccccCCCCCc-hhHHH
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST-KSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK-ALKLW 97 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~-al~~w 97 (218)
+..|.+.+..||+++ |.|.|+++++++.. . .+.. .+.|+...... . ....+++=... ...+-
T Consensus 185 ~~~d~~~~ssqK~lg-P~Glg~l~~s~~~l-~-~~~~~~~~~~~~~~~~---------~----~~~~~~Tp~~~~i~aL~ 248 (360)
T PRK05355 185 SKFGLIYAGAQKNIG-PAGLTIVIVREDLL-G-RALPSIPSMLDYKTHA---------D----NDSMYNTPPTFAIYLAG 248 (360)
T ss_pred HHccEEEEecccccc-CCceEEEEECHHHH-h-hcccCCChHHHHHHHH---------h----cCCccCCCcHHHHHHHH
Confidence 445799999999875 99999999999854 2 2222 12232211100 0 00111221112 23455
Q ss_pred HHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCc-eeEEEEecCCCc-chH-HHhhc-eeecceEECC
Q 041549 98 TVIRKHGYS-GLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKC-ALVCFRLKPKRE-SDG-SELNQ-LSLTQATLGG 170 (218)
Q Consensus 98 ~~l~~~G~~-g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~-~iV~Fr~~~~~~-~~~-~~Ln~-~~vs~~~~~g 170 (218)
.+++.+-.+ |+.++.++..++++++.+.|++.+.+..+.+ ..+ .+++|++++... ... +.+.+ .++.....+.
T Consensus 249 ~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~~~~~Gi~~~~~~~~ 328 (360)
T PRK05355 249 LVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADEELDKKFLAEAKAAGLVGLKGHRS 328 (360)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCChHHHHHHHHHHHHCCCcccCCCCc
Confidence 577777677 7888889999999999999999864344333 245 579999876411 111 22222 2222211121
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHHH
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~~ 200 (218)
...+|+|+. +++|.+|||.|++.|+++..
T Consensus 329 ~g~vRiS~~-~~nt~eei~~l~~~l~~~~~ 357 (360)
T PRK05355 329 VGGMRASIY-NAMPLEGVQALVDFMKEFER 357 (360)
T ss_pred cCcEEEECC-CCCCHHHHHHHHHHHHHHHH
Confidence 357999995 69999999999999998653
No 45
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=98.94 E-value=1e-08 Score=89.87 Aligned_cols=163 Identities=10% Similarity=-0.015 Sum_probs=100.9
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcC----CcccccccCCCCCCCCCCCCccCCcCcc--ccCCCCCc-h
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST----KSDIMRNRSPASSTSTNVAPVIDYKDWQ--IALSRRFK-A 93 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~----~~~yl~~~~~~~~~~~~~~~~~~~~~~t--l~~sR~~~-a 93 (218)
++|.+..++|||+++|.|+|+++++++. . +.+.. ...|...... ..+.... ..++-... .
T Consensus 176 ~~d~~~~s~~K~l~~p~g~G~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~t~~~~~~ 242 (356)
T cd06451 176 GVDVAYTGSQKALGAPPGLGPIAFSERA-L-ERIKKKTKPKGFYFDLLLL-----------LKYWGEGYSYPHTPPVNLL 242 (356)
T ss_pred CccEEEecCchhccCCCCcceeEECHHH-H-HHHHhcCCCCceeecHHHH-----------HhhhcccCCCCCCChHHHH
Confidence 5799999999999999999999998753 2 23221 1111110000 0000000 00110111 2
Q ss_pred hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--CceeE-EEEecCC-Cc-chHHHhhc---eeecc
Q 041549 94 LKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR--KCALV-CFRLKPK-RE-SDGSELNQ---LSLTQ 165 (218)
Q Consensus 94 l~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~--~~~iV-~Fr~~~~-~~-~~~~~Ln~---~~vs~ 165 (218)
..+..+++.+...|+++..++..++++++.+.|++. ++++..++ ..+++ .++.++. +. +..+.|.+ +++++
T Consensus 243 ~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~gI~~~~ 321 (356)
T cd06451 243 YALREALDLILEEGLENRWARHRRLAKALREGLEAL-GLKLLAKPELRSPTVTAVLVPEGVDGDEVVRRLMKRYNIEIAG 321 (356)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCCceEEEECCCCCCHHHHHHHHHHhCCEEEec
Confidence 345567777778888888999999999999999987 89888643 35555 4555432 22 22345543 33332
Q ss_pred eEE-CCEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 166 ATL-GGVYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 166 ~~~-~g~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
..- ..+.++|++++ ++++++||+++++.|+++
T Consensus 322 g~~~~~~~~iRis~~-~~~~~e~v~~~~~~l~~~ 354 (356)
T cd06451 322 GLGPTAGKVFRIGHM-GEATREDVLGVLSALEEA 354 (356)
T ss_pred ccccccCCEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 111 12358999995 789999999999999875
No 46
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=98.90 E-value=4.3e-08 Score=96.28 Aligned_cols=172 Identities=13% Similarity=-0.004 Sum_probs=107.9
Q ss_pred CCCCCCeeeecccccCCCccc-----eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCC-
Q 041549 18 GVELADSVSLNPHKWFLTNMD-----CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRF- 91 (218)
Q Consensus 18 gi~~aDSi~~d~HK~l~~P~~-----~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~- 91 (218)
|--+||.+.++.|||+++|.| +|+++++.. +...+... . +.... +......-+--|+++.
T Consensus 716 ~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~--L~p~lPg~-~-v~~~~----------~~~~r~~~s~iGt~~~a 781 (993)
T PLN02414 716 GFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKH--LAPFLPSH-P-VVPTG----------GIPRPEKTQPLGTISAA 781 (993)
T ss_pred cccCCCEEEecCCccCCcCcccCCCCeeeEEEchh--hcccCCCC-c-cccCC----------CcccccCCCCcCCccch
Confidence 455799999999999998886 999999874 22222211 1 11111 0000001111255443
Q ss_pred ---c---hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCc--eeEEEE-ecC---CCcc-hHH
Q 041549 92 ---K---ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKC--ALVCFR-LKP---KRES-DGS 156 (218)
Q Consensus 92 ---~---al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~--~iV~Fr-~~~---~~~~-~~~ 156 (218)
. ++..|+-++.+|.+|+++.-++++.+|+|++++|++..++....+ +.. .++.++ ++. .+.+ ..+
T Consensus 782 ~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~k 861 (993)
T PLN02414 782 PWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAK 861 (993)
T ss_pred hhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCeeeeEEEeccccccccCCCHHHHHH
Confidence 1 356788889999999999999999999999999987444433333 212 233333 211 1112 234
Q ss_pred Hhhc-eeecceE-ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 157 ELNQ-LSLTQAT-LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 157 ~Ln~-~~vs~~~-~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
+|.+ ++..++. +.....||++++ .+.+++|||+|++.|..+..++..
T Consensus 862 rL~d~Gihapt~~~pv~~~lmiepT-E~~skeelDrf~~al~~i~~e~~~ 910 (993)
T PLN02414 862 RLMDYGFHAPTMSWPVPGTLMIEPT-ESESKAELDRFCDALISIREEIAD 910 (993)
T ss_pred HHHHcCcEEeeeccccCCEEEEEee-eeCCHHHHHHHHHHHHHHHHHHHH
Confidence 4544 3333221 123457999995 799999999999999999888865
No 47
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=98.90 E-value=2.6e-08 Score=87.74 Aligned_cols=162 Identities=12% Similarity=0.021 Sum_probs=99.8
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCC--cccccccCCCCCCCCCCCCccCCcCccccCCCCCc-----h
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTK--SDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK-----A 93 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~--~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~-----a 93 (218)
++|.+...+|||+++|.|.|+++++++.. . .+... +.|+.... .+....+ -++.++|. .
T Consensus 181 ~~D~~~~s~~K~l~~p~G~G~l~~~~~~~-~-~~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~ft~~~~~~ 246 (363)
T TIGR02326 181 HIDYLISSANKCIQGVPGFGFVIARQAEL-A-ACKGNARSLSLDLYD-----------QWRCMED-NHGKWRFTSPTHVV 246 (363)
T ss_pred CccEEEecCccccccCCcceEEEECHHHH-H-HhhcCCCceeecHHH-----------HHHHHhc-cCCCCCCCCcHHHH
Confidence 58999999999999999999999987643 2 22111 00110000 0000000 11223332 2
Q ss_pred hHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--Ccee-EEEEecCC---Cc-chHHHhhc--eee
Q 041549 94 LKLWTVIRKHGYS-GLMYHIRSDVNMAKRFEAMVAKDERFETVEPR--KCAL-VCFRLKPK---RE-SDGSELNQ--LSL 163 (218)
Q Consensus 94 l~~w~~l~~~G~~-g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~--~~~i-V~Fr~~~~---~~-~~~~~Ln~--~~v 163 (218)
+.+..+++.+-.+ |++++.++..++++++.+.|++. +++++.++ .+++ ++|++.+. +. ...+.|.+ +++
T Consensus 247 ~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gi~v 325 (363)
T TIGR02326 247 HAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRAL-GFEPLLDDEIQSPIITSFYSPEDPDYRFADFYQRLKEQGFVI 325 (363)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCeeccCcccCCceEEEEECCCCCCCCHHHHHHHHHHCCEEE
Confidence 3444456666554 47777788889999999999987 88887653 4554 57887642 11 22344543 444
Q ss_pred cceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 164 TQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 164 s~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
++....+..++|++++ .+++.+|++.+++.|+++
T Consensus 326 ~~g~~~~~~~iRi~~~-~~~~~edv~~~l~~l~~~ 359 (363)
T TIGR02326 326 YPGKVSQVDCFRIGNI-GEVDAADITRLLTAIGKA 359 (363)
T ss_pred ECCcCCCCCEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 4322122357999975 578999999999999775
No 48
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=98.88 E-value=1.6e-08 Score=91.78 Aligned_cols=174 Identities=14% Similarity=0.026 Sum_probs=102.6
Q ss_pred CCCCCCeeeeccccc-----CCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCC-------CccCCcCcc-
Q 041549 18 GVELADSVSLNPHKW-----FLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVA-------PVIDYKDWQ- 84 (218)
Q Consensus 18 gi~~aDSi~~d~HK~-----l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~-------~~~~~~~~t- 84 (218)
+--++|.+..+.||| +.+| ++|+++++++.. +.+. +...+..... .++.... +...+...+
T Consensus 252 ~~~~~D~~~~s~~k~~~~~~~~Gp-g~G~l~~~~~~~--~~~~--~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 325 (447)
T PRK00451 252 GEYGADIVVGEGQPLGIPLSFGGP-YLGFFATRKKLV--RQMP--GRLVGETVDA-DGKRGFVLTLQAREQHIRREKATS 325 (447)
T ss_pred ccCCCCEEEECCCcCCCCCCCCCC-CchHHHhhHHHH--hhCC--CCEeeeeccc-CCCeeeEeeccccccccccccccc
Confidence 456889999999998 5556 899999977532 2321 1111111000 0000000 000000000
Q ss_pred ccCCCC-CchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc-ee
Q 041549 85 IALSRR-FKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ-LS 162 (218)
Q Consensus 85 l~~sR~-~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~-~~ 162 (218)
..++.. ..++..+..++.+|.+|++++.++..++++++.+.|+++++++++..+.+..+++++.....+..++|.+ ..
T Consensus 326 ~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~v~~~~~~~~~~~~L~~~gi 405 (447)
T PRK00451 326 NICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFDGPFFNEFVVRLPKPAEEVNEALLEKGI 405 (447)
T ss_pred cccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecCCCeEEEEEEecCCCHHHHHHHHHhcCC
Confidence 011111 1125555567788999999999999999999999999999999884444555667763222233455554 22
Q ss_pred ecc----eEEC-CEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 163 LTQ----ATLG-GVYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 163 vs~----~~~~-g~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
+.. .... ...++|++++ .++|++||+++++.|+++
T Consensus 406 ~~~~~~~~~~~~~~~~~rvs~~-~~~t~e~i~~l~~~L~~~ 445 (447)
T PRK00451 406 LGGYDLGRYYPELGNHLLVCVT-EKRTKEDIDALVAALGEV 445 (447)
T ss_pred CCCcccccccCCcCCEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 211 0111 1247999985 689999999999999865
No 49
>PLN02409 serine--glyoxylate aminotransaminase
Probab=98.87 E-value=2.1e-08 Score=89.91 Aligned_cols=164 Identities=9% Similarity=-0.012 Sum_probs=101.2
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcC---CcccccccCCCCCCCCCCCCccCCcCccccCCC-CCc-hh-
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST---KSDIMRNRSPASSTSTNVAPVIDYKDWQIALSR-RFK-AL- 94 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~---~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR-~~~-al- 94 (218)
++|.+.+++|||+++|.|+|+++++++.. +.+.. .+.|...... .+ +.-.+.+ .+. .+
T Consensus 191 ~~D~~~~s~~K~l~~P~G~G~l~~~~~~~--~~~~~~~~~~~~~~~~~~-----------~~---~~~~g~~~~~Tp~~~ 254 (401)
T PLN02409 191 GVDVALTGSQKALSLPTGLGIVCASPKAL--EASKTAKSPRVFFDWADY-----------LK---FYKLGTYWPYTPSIQ 254 (401)
T ss_pred CccEEEEcCccccCcCCCcceeEECHHHH--HHHhcCCCCCeecCHHHH-----------HH---HHhcCCCCCCCccHH
Confidence 68999999999999999999999887642 23221 1223221100 00 0000111 111 12
Q ss_pred ---HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC---Cc-eeEEEEecC-CCcc-hHHHhhc---ee
Q 041549 95 ---KLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR---KC-ALVCFRLKP-KRES-DGSELNQ---LS 162 (218)
Q Consensus 95 ---~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~---~~-~iV~Fr~~~-~~~~-~~~~Ln~---~~ 162 (218)
.+-.+++.+-.+|++++.++..++++++.+.|++. +++++.+. .+ .+++|+++. .+.+ ..+.+.+ ..
T Consensus 255 ~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~~~~~~l~~~l~~~~~i~ 333 (401)
T PLN02409 255 LLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAW-GLKLCTKKPEWRSDTVTAVVVPEGIDSAEIVKNAWKKYNLS 333 (401)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCeeccCChhhcccceEEEeCCCCCCHHHHHHHHHHhCCEE
Confidence 23334555556677777777789999999999986 89998742 24 467788753 2322 2344433 23
Q ss_pred ecceEEC-CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 163 LTQATLG-GVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 163 vs~~~~~-g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
+...... ...++|++.+ .+++.+|+..+++.|.+...++
T Consensus 334 i~~G~~~~~~~~~Rig~~-g~~~~~~~~~~~~~~~~~l~~~ 373 (401)
T PLN02409 334 LGLGLNKVAGKVFRIGHL-GNVNELQLLGALAGVEMVLKDV 373 (401)
T ss_pred EEcCCCcccCCEEEEcCC-CCCCHHHHHHHHHHHHHHHHHc
Confidence 3322111 2357999986 5899999999999998876554
No 50
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=98.86 E-value=4.6e-08 Score=85.26 Aligned_cols=162 Identities=12% Similarity=0.112 Sum_probs=97.7
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhc-CCcccccccCCCCCCCCCCCCccCCcCccccCCCCCc-----hh
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQS-TKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK-----AL 94 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~-~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~-----al 94 (218)
.+|.+..++|||+++|.|+|+++++++. + +.+. ...+|..+.. ..+.+. .-.+..++. ..
T Consensus 177 ~~d~~~~s~~K~l~~~~G~g~~~~~~~~-~-~~~~~~~~~~~~~~~----------~~~~~~--~~~~~~~~t~~~~~~~ 242 (355)
T TIGR03301 177 DVDALIASANKCLEGVPGFGFVIARRDL-L-EASAGNARSLYLDLY----------DQWAYM--EKTGKWRFTPPTHTVY 242 (355)
T ss_pred CccEEEecCCcccccCCceeEEEECHHH-H-HHhhCCCCCceeeHH----------HHHHHh--hhcCCCCCCCcHHHHH
Confidence 5899999999999999999999998763 2 2222 1111111100 000000 000111111 12
Q ss_pred HHHHHHHHhcHHH-HHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--Cce-eEEEEecCCCc----chHHHhhc--eeec
Q 041549 95 KLWTVIRKHGYSG-LMYHIRSDVNMAKRFEAMVAKDERFETVEPR--KCA-LVCFRLKPKRE----SDGSELNQ--LSLT 164 (218)
Q Consensus 95 ~~w~~l~~~G~~g-~~~~i~~~~~la~~l~~~L~~~~~~el~~~~--~~~-iV~Fr~~~~~~----~~~~~Ln~--~~vs 164 (218)
.+..+++.+-.+| +.+.+++..++++++.+.|++. +++++.++ ..+ +++|++++... +..+.+.+ ..+.
T Consensus 243 a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~ 321 (355)
T TIGR03301 243 AFAQALEELEAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPERWQSPIIVSFLYPDDPDFDFDDFYQELKERGFVIY 321 (355)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCCCCCCcEEEEECCCCCcchHHHHHHHHHHCCEEEE
Confidence 3444666666665 7888888889999999999986 88877653 233 56788764211 22344433 3333
Q ss_pred ceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 165 QATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 165 ~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
+.......+||++++ .+++++|++++++.|++.
T Consensus 322 ~~~~~~~~~iRis~~-~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 322 PGKLTLADTFRIGTI-GEIDAADIERLLEAIKDA 354 (355)
T ss_pred CCccccccEEEEecC-CCCCHHHHHHHHHHHHhh
Confidence 321111268999984 688999999999999763
No 51
>PRK14012 cysteine desulfurase; Provisional
Probab=98.82 E-value=1.9e-07 Score=83.61 Aligned_cols=159 Identities=16% Similarity=0.103 Sum_probs=93.2
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCc-hhHHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK-ALKLWTV 99 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~-al~~w~~ 99 (218)
.+|++++++|| +++|.|+|++++++.... ...+.+.+.... ..+.. ++.... .+.+-.+
T Consensus 196 ~~D~~~~s~~K-~~gp~g~G~l~~~~~~~~----~~~~~~~g~~~~---------~~~~~------gt~~~~~~~~l~~a 255 (404)
T PRK14012 196 KVDLMSFSAHK-IYGPKGIGALYVRRKPRV----RLEAQMHGGGHE---------RGMRS------GTLPTHQIVGMGEA 255 (404)
T ss_pred CCCEEEEehhh-ccCCCceEEEEEecCCCC----CCCceecCCCcc---------CCccC------CCcCHHHHHHHHHH
Confidence 58999999999 567899999999987432 122222221100 00000 111110 1111122
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-----CCceeEEEEecCCCcchHHHhhcee------ecceE-
Q 041549 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP-----RKCALVCFRLKPKRESDGSELNQLS------LTQAT- 167 (218)
Q Consensus 100 l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-----~~~~iV~Fr~~~~~~~~~~~Ln~~~------vs~~~- 167 (218)
+... ..++.++.++..++++++.+.|++.+++++..+ +....++|...+. .+....|+... +++..
T Consensus 256 l~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~i~~g~~~~~~~~ 333 (404)
T PRK14012 256 ARIA-KEEMATENERIRALRDRLWNGIKDIEEVYLNGDLEQRVPGNLNVSFNYVEG-ESLIMALKDLAVSSGSACTSASL 333 (404)
T ss_pred HHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCEEEEEEeCcCH-HHHHHhCCCeEEEchhhhCCCCC
Confidence 2211 234566677778999999999999999987743 2233567776432 22233343311 11110
Q ss_pred -------------ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 168 -------------LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 168 -------------~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
.....++|+++ ++++|++|+|.+++.|+++...+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~iRls~-~~~~t~~dvd~~~~~l~~~~~~~ 380 (404)
T PRK14012 334 EPSYVLRALGLNDELAHSSIRFSL-GRFTTEEEIDYAIELVRKSIGKL 380 (404)
T ss_pred CCCHHHHHcCCChhhcCceEEEEe-cCCCCHHHHHHHHHHHHHHHHHH
Confidence 00135799998 47899999999999999987765
No 52
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=98.81 E-value=2.5e-07 Score=81.88 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=102.4
Q ss_pred CCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCC-----chhHH
Q 041549 22 ADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRF-----KALKL 96 (218)
Q Consensus 22 aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~-----~al~~ 96 (218)
+|.++++.||. ++|.|+|+||+|+...+ .|-..+... |.++|. -++.-
T Consensus 194 vD~ls~SaHK~-~GpkGiGaLyv~~~~~~------~p~i~GGgQ--------------------E~g~RsGTenv~~Ivg 246 (386)
T COG1104 194 VDLLSFSAHKF-GGPKGIGALYVRPGVRL------EPLIHGGGQ--------------------ERGLRSGTENVPGIVG 246 (386)
T ss_pred cceEEeehhhc-cCCCceEEEEECCCCcc------CceeccCcC--------------------CCCCCCCCccHHHHHH
Confidence 99999999997 56999999999766443 221222111 111111 12211
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEecC--CCc-eeEEEEecCCCcc-hHHHhhc--eeecceE--
Q 041549 97 WTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKD-ERFETVEP--RKC-ALVCFRLKPKRES-DGSELNQ--LSLTQAT-- 167 (218)
Q Consensus 97 w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~-~~~el~~~--~~~-~iV~Fr~~~~~~~-~~~~Ln~--~~vs~~~-- 167 (218)
...--.+..+.+.....+...+.++|.+.|.+. |++.+... +++ ++++|.+++...+ .+-.|+. +++|...
T Consensus 247 ~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE~ll~~L~~~gI~vStGSAC 326 (386)
T COG1104 247 FGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLLALDLAGIAVSTGSAC 326 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCcHHHHHHhccccCeEEeccccc
Confidence 111124556677777777789999999999976 89988864 344 5889999876433 3445554 3333110
Q ss_pred ---------------E---CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 168 ---------------L---GGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 168 ---------------~---~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
+ .-...||++++ .+||++|||.+++.+.++..++..
T Consensus 327 sS~~~~pShVL~AmG~~~e~a~~siR~S~g-~~tt~eei~~~~~~l~~~i~~lr~ 380 (386)
T COG1104 327 SSGSLEPSHVLRAMGISEELAHGSIRFSLG-RFTTEEEIDAAAEALKEIIKRLRE 380 (386)
T ss_pred cCCCCCccHHHHHcCCChHHhCccEEEEcC-CCCCHHHHHHHHHHHHHHHHHHhh
Confidence 0 11467999996 799999999999999999887754
No 53
>PRK12566 glycine dehydrogenase; Provisional
Probab=98.80 E-value=9.3e-08 Score=92.88 Aligned_cols=167 Identities=13% Similarity=0.009 Sum_probs=104.8
Q ss_pred CCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccC-CCCCCCCCCCCccCCcCccccCCCC----Cc
Q 041549 18 GVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRS-PASSTSTNVAPVIDYKDWQIALSRR----FK 92 (218)
Q Consensus 18 gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~-~~~~~~~~~~~~~~~~~~tl~~sR~----~~ 92 (218)
|--+||.+..++|||+++|.|.|..++..-... +.+ .+|+.... .+.+ +.. .. +++.. ..
T Consensus 691 g~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~-~~L---~pfLp~~P~~d~~------G~~--~r---~ga~S~~~~gs 755 (954)
T PRK12566 691 ADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVR-AHL---APFVANHPVVPVE------GPD--PN---NGAVSAAPWGS 755 (954)
T ss_pred hhcCCCEEEecCCcccCcCccCCCCccchhhhh-hhh---hhhccCCCCcCCC------CCC--CC---CCceeecccch
Confidence 556799999999999999999999998872211 111 12332110 0000 000 00 12221 12
Q ss_pred ---hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-------CceeEEEEecCC---Ccc-hHHHh
Q 041549 93 ---ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR-------KCALVCFRLKPK---RES-DGSEL 158 (218)
Q Consensus 93 ---al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~-------~~~iV~Fr~~~~---~~~-~~~~L 158 (218)
++..|.-++.+|.+ +.+.-..++.+|+|++++|.+ ++++...+ ++.+.++.++.. +.+ ..++|
T Consensus 756 a~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~--~~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL 832 (954)
T PRK12566 756 ASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGG--AFPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRL 832 (954)
T ss_pred HHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHh--hCCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHH
Confidence 46788888999999 877777788999999999987 44444321 344555555421 112 23445
Q ss_pred hc-eeecce-EECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 159 NQ-LSLTQA-TLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 159 n~-~~vs~~-~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
.+ .+..++ .+.....||++++ .+.+++|||+|++.|..+.+|+.
T Consensus 833 ~d~Gihapt~~fPv~~~LmIepT-E~eskeEIDrf~eAL~~I~~e~~ 878 (954)
T PRK12566 833 MDYGFHAPTMSFPVPGTLMVEPT-ESESKAELDRFVEAMLSIRAEIG 878 (954)
T ss_pred HHCCcEEeEEeeccCCEEEEEee-eeCCHHHHHHHHHHHHHHHHHHH
Confidence 44 333322 1233457999995 79999999999999999988864
No 54
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=98.79 E-value=3.2e-08 Score=87.69 Aligned_cols=169 Identities=11% Similarity=0.099 Sum_probs=99.7
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcchhhhhc--CC----cccccccCCCCCCCCCCCCccCCcCccccCCCCCc
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQS--TK----SDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK 92 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~--~~----~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~ 92 (218)
++.+|.+.+.+|||++.|-|.++++++++.. ..... .. +.|+...... .+..+...+++=...
T Consensus 173 v~~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~-~~~~~~~~~~~~~p~~~d~~~~~----------~~~~~~~t~~tp~i~ 241 (361)
T TIGR01366 173 IAETDVYYFAPQKNFASDGGLWLAIMSPAAL-ERIEAIAASGRWVPEFLSLPTAV----------DNSLKNQTYNTPAIA 241 (361)
T ss_pred HHHCCEEEEEchhhcCCCCceEEEEECHHHH-hhhhcccCCCCCCchhhhHHHHH----------hccccCCCCCCchHH
Confidence 3458999999999999998888888888643 11111 00 1122111000 000000001111111
Q ss_pred h-hHHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-C--Cc---eeEEEEecCCCcch-HHHhhc--e
Q 041549 93 A-LKLWTVIRKHGYS-GLMYHIRSDVNMAKRFEAMVAKDERFETVEP-R--KC---ALVCFRLKPKRESD-GSELNQ--L 161 (218)
Q Consensus 93 a-l~~w~~l~~~G~~-g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-~--~~---~iV~Fr~~~~~~~~-~~~Ln~--~ 161 (218)
+ +.+-.+++.+-.+ |+..+.++..++++++.+.+++.+.++++.+ + .+ ++|.| ..+.+.++ ...|.+ .
T Consensus 242 ~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v~~-~~g~~~~~v~~~L~~~gI 320 (361)
T TIGR01366 242 TLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTIDF-VDDIDAATVAKILRANGI 320 (361)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEEEC-CCccCHHHHHHHHHHCCC
Confidence 1 2344466666555 5788888888999999999999977777642 2 22 44555 23333333 345544 3
Q ss_pred eecce--EECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 162 SLTQA--TLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 162 ~vs~~--~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
.+... .++ ..++|++.+ .++|.+||+++++.|++...+
T Consensus 321 ~i~~~~~~l~-~~~vRis~~-~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 321 VDTEPYRKLG-RNQLRVAMF-PAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred eeccCccccC-CCcEEEEcC-CCCCHHHHHHHHHHHHHHHhh
Confidence 33221 122 357999986 599999999999999997654
No 55
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=98.75 E-value=1.3e-07 Score=83.41 Aligned_cols=166 Identities=14% Similarity=0.063 Sum_probs=100.3
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcC-CcccccccCCCCCCCCCCCCccCCcCccccCCCCCc-----hh
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST-KSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK-----AL 94 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~-----al 94 (218)
++|.+...+|||+++|.|+|+++++++. + +.+.. ..+|..+... .+++. . -.+.+++. ..
T Consensus 183 ~~d~~v~s~~K~l~g~~G~G~l~~~~~~-~-~~~~~~~~~~~~~~~~----------~~~~~-~-~~~~~~~t~~~~~~~ 248 (368)
T PRK13479 183 GIDALISSANKCIEGVPGFGFVIARRSE-L-EACKGNSRSLSLDLYD----------QWAYM-E-KTGQWRFTPPTHVVA 248 (368)
T ss_pred CceEEEecCccccccCCCceEEEECHHH-H-HHhhcCCCCeeecHHH----------HHhhh-c-ccCCCCCCCcHHHHH
Confidence 5899999999999999999999998753 2 23321 1121111000 00000 0 01111121 23
Q ss_pred HHHHHHHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--Cc-eeEEEEecCCC---c-chHHHhhc--eeec
Q 041549 95 KLWTVIRKHGYS-GLMYHIRSDVNMAKRFEAMVAKDERFETVEPR--KC-ALVCFRLKPKR---E-SDGSELNQ--LSLT 164 (218)
Q Consensus 95 ~~w~~l~~~G~~-g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~--~~-~iV~Fr~~~~~---~-~~~~~Ln~--~~vs 164 (218)
.+..++..+-.+ ++.+++++..++++++.+.|++. +++++.++ .. .+++|.+.... . +..+.|.+ +.+.
T Consensus 249 ~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 327 (368)
T PRK13479 249 AFYQALLELEEEGGVPARGARYANNQRTLVAGMRAL-GFEPLLDAEIQSPIIVTFHAPADPAYDFKEFYERLKEQGFVIY 327 (368)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc-CCcccCCchhcCceEEEEECCCCCCcCHHHHHHHHHHCCEEEe
Confidence 444556655444 47788888899999999999997 88877543 23 35788865431 1 22344433 3333
Q ss_pred ceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 165 QATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 165 ~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
........++|++.+ .+++++|++.+++.|+++..++
T Consensus 328 ~g~~~~~~~iRis~~-~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 328 PGKLTQVDTFRIGCI-GDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred cCCCCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHHHc
Confidence 211111347999874 5889999999999999876543
No 56
>PRK02948 cysteine desulfurase; Provisional
Probab=98.67 E-value=7.9e-07 Score=78.80 Aligned_cols=159 Identities=11% Similarity=0.089 Sum_probs=95.7
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCch-hHHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKA-LKLWTV 99 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~a-l~~w~~ 99 (218)
.+|+++.++||+ ++|.|+|+++++++..+... +...... ..+. +++-..-+ +.+-.+
T Consensus 190 ~~d~~~~s~~K~-~gp~G~G~l~~~~~~~~~~~------~~~~~~~---------~~~~------~~t~~~~~~~a~~~a 247 (381)
T PRK02948 190 GIDSLSVSAHKI-YGPKGVGAVYINPQVRWKPV------FPGTTHE---------KGFR------PGTVNVPGIAAFLTA 247 (381)
T ss_pred CCCEEEecHHhc-CCCCcEEEEEEcCCCCCCCc------ccCCCCC---------CCcC------CCCccHHHHHHHHHH
Confidence 589999999996 56999999999876321110 0000000 0111 11111112 223334
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec--CC--C-ceeEEEEecCCCcc-hHHHhhc--eeecceE----
Q 041549 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE--PR--K-CALVCFRLKPKRES-DGSELNQ--LSLTQAT---- 167 (218)
Q Consensus 100 l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~--~~--~-~~iV~Fr~~~~~~~-~~~~Ln~--~~vs~~~---- 167 (218)
++.+ .+++.+..++..++++++.+.|++. ++++.. ++ . ..+++|...+.+.+ ....|.+ +.+....
T Consensus 248 l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~-~~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~v~~g~~c~~ 325 (381)
T PRK02948 248 AENI-LKNMQEESLRFKELRSYFLEQIQTL-PLPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIAISTGSACQV 325 (381)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEEEEchHhcCC
Confidence 4433 2457777888889999999999987 565442 11 2 34788887754332 2334433 3332100
Q ss_pred -E----------C-----CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 168 -L----------G-----GVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 168 -~----------~-----g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
+ + ...++|++++ +++|++|+|++++.|+++...+..
T Consensus 326 ~~~~p~~~~~~~~~~~~~~~~~lRis~~-~~~t~~di~~l~~~l~~~~~~~~~ 377 (381)
T PRK02948 326 GKQEPSKTMLAIGKTYEEAKQFVRFSFG-QQTTKDQIDTTIHALETIGNQFYR 377 (381)
T ss_pred CCCCCCHHHHHcCCChHHhCceEEEEcC-CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 0 1 1368999985 899999999999999998776654
No 57
>PLN02721 threonine aldolase
Probab=98.61 E-value=6.9e-07 Score=77.94 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEE-ecCCCceeEEEEecCC---Cc-chHHHhhc--eeecceEECCEEEEEEecCCCCC
Q 041549 111 HIRSDVNMAKRFEAMVAKDERFET-VEPRKCALVCFRLKPK---RE-SDGSELNQ--LSLTQATLGGVYVIRCSIGTTLT 183 (218)
Q Consensus 111 ~i~~~~~la~~l~~~L~~~~~~el-~~~~~~~iV~Fr~~~~---~~-~~~~~Ln~--~~vs~~~~~g~~~lR~~~~n~~t 183 (218)
.+++..++++++.+.|++++++++ +.++..+++.|++... +. +..+.|.+ ..+.+ .+..++|++++ +++
T Consensus 259 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~---~~~~~lR~~~~-~~~ 334 (353)
T PLN02721 259 KLEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGSRITAEKLCKSLEEHGVLLMP---GNSSRIRVVTH-HQI 334 (353)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCccccHHHHHHHHHhCCcEEec---CCCceEEEEec-CcC
Confidence 445556788999999999889976 6667788899988642 11 22345544 33332 24468999984 789
Q ss_pred cHHHHHHHHHHHHHHHH
Q 041549 184 QDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 184 t~~di~~l~~~l~~~~~ 200 (218)
+++||+++++.|++...
T Consensus 335 ~~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 335 SDSDVQYTLSCFQQAAL 351 (353)
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999988654
No 58
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=98.60 E-value=5e-07 Score=82.77 Aligned_cols=157 Identities=16% Similarity=0.109 Sum_probs=97.8
Q ss_pred CCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHH
Q 041549 18 GVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLW 97 (218)
Q Consensus 18 gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w 97 (218)
...++|.++..+|||+.+|.| |++++++.. .+.+....+|+.... ++ ......-
T Consensus 273 ~~~~~D~vtgT~hKaL~GP~G-G~I~~~~~l--~~~L~~a~P~i~gg~-------------------l~----p~iAA~a 326 (493)
T PRK13580 273 PVPHADIVTTTTHKTLRGPRG-GLVLAKKEY--ADAVDKGCPLVLGGP-------------------LP----HVMAAKA 326 (493)
T ss_pred CCCCCcEEEeCChhhccCCCe-EEEEecHHH--HHHHhhCCCcccCCC-------------------cc----HHHHHHH
Confidence 356899999999999999996 888887542 233321113333211 10 0111111
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceeEEEEecCCCc---chHHHhhc--eeec----ceE
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP-RKCALVCFRLKPKRE---SDGSELNQ--LSLT----QAT 167 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-~~~~iV~Fr~~~~~~---~~~~~Ln~--~~vs----~~~ 167 (218)
.+++.+-...++++.++..+++++|++.|.+. ||.++.. .+++||...+.+.+. ...+.|.+ +++. |+.
T Consensus 327 vAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~-G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptv 405 (493)
T PRK13580 327 VALAEARTPEFQKYAQQVVDNARALAEGFLKR-GARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSD 405 (493)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHHHHHhc-CCCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCC
Confidence 23444433444556666689999999999996 9998753 578899888865431 11234544 3332 222
Q ss_pred ECC---EEEEEEecCCCCC----cHHHHHHHHHHHHHHHHHH
Q 041549 168 LGG---VYVIRCSIGTTLT----QDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 168 ~~g---~~~lR~~~~n~~t----t~~di~~l~~~l~~~~~~~ 202 (218)
-.+ ...||+++. ..| +++||+++++.|.++....
T Consensus 406 p~g~~~~srLRIg~~-A~ttrg~teedi~~iad~l~~~l~~~ 446 (493)
T PRK13580 406 PNGAWYTSGIRLGTP-ALTTLGMGSDEMDEVAELIVKVLSNT 446 (493)
T ss_pred CCCCCCCceEEeccc-hhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence 234 456999984 434 5999999999998887654
No 59
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=98.50 E-value=1.3e-06 Score=75.72 Aligned_cols=145 Identities=14% Similarity=0.057 Sum_probs=90.1
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCC-cccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTK-SDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
..+|.++.++|||++.|.| .+++.++... +.+... ..+ + + .++ ..++..++
T Consensus 185 ~~~d~~~~s~sK~~~~~~g--~~~~~~~~~~-~~~~~~~~~~-~-------------~-----~~~------~~~~~~~a 236 (338)
T cd06502 185 SGVDSVSFCLSKGGGAPVG--AVVVGNRDFI-ARARRRRKQA-G-------------G-----GMR------QSGFLAAA 236 (338)
T ss_pred hcCCEEEEeccccCCCccc--eEEECCHHHH-HHHHHHHHHh-C-------------C-----Chh------hHHHHHHH
Confidence 5789999999999998864 3555555443 332210 000 0 0 011 12233344
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcc---hHHHh----hceeecceEECCE
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRES---DGSEL----NQLSLTQATLGGV 171 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~---~~~~L----n~~~vs~~~~~g~ 171 (218)
++..+...++.+++++..++++++.+.|+++ ++. +.++..+++++++.+.... ..+.+ .+..+... .++
T Consensus 237 ~~~~L~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~gi~~~~-~~~- 312 (338)
T cd06502 237 GLAALENDLWLRRLRHDHEMARRLAEALEEL-GGL-ESEVQTNIVLLDPVEANAVFVELSKEAIERRGEGVLFYA-WGE- 312 (338)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHhc-CCC-cccccCCeEEEecCCccHHHHHHHHHHHHhhhCCEEEEe-cCC-
Confidence 4445555567788888899999999999997 554 4467889999987543221 11222 23322211 122
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHH
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~ 197 (218)
.+||+++ +.+++++|++++++.+++
T Consensus 313 ~~lRi~~-~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 313 GGVRFVT-HWDTTEEDVDELLSALKA 337 (338)
T ss_pred CeEEEEe-ecCCCHHHHHHHHHHHhc
Confidence 6799999 478899999999998864
No 60
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=98.43 E-value=8.7e-06 Score=72.66 Aligned_cols=158 Identities=15% Similarity=0.086 Sum_probs=92.8
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCC-CCCchhHHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALS-RRFKALKLWTV 99 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~s-R~~~al~~w~~ 99 (218)
++|.++.++|||+++|.+.|+++++++ ...........|.... ... +.++ +...++.++.+
T Consensus 210 g~D~~~~s~~K~l~~~~~~G~l~~~~~-~i~~~~~~~~~~~~~~-------------~~~----~~~~~~~~~~~~~~aa 271 (387)
T PRK09331 210 GADFIVGSGHKSMAASAPSGVLATTEE-YADKVFRTSRKFGVKE-------------VEL----LGCTLRGAPLVTLMAS 271 (387)
T ss_pred CCCEEEeeCcccccCCCCEEEEEECHH-HHhhcccccCCCcccc-------------eee----eceecCchHHHHHHHH
Confidence 589999999999999999999998764 2222212222222110 000 1111 11223444444
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceeEEEEecCCC----------cchHHHhhc-eeecce
Q 041549 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKCALVCFRLKPKR----------ESDGSELNQ-LSLTQA 166 (218)
Q Consensus 100 l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~~iV~Fr~~~~~----------~~~~~~Ln~-~~vs~~ 166 (218)
+..+- +. .+++++..++++++++.|+++++++++.+ ...++++|..+... .+..+.|.+ .... .
T Consensus 272 l~~~~-~~-~~~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~-~ 348 (387)
T PRK09331 272 FPHVV-ER-VKRWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHG-I 348 (387)
T ss_pred HHHHH-HH-HHHHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceE-E
Confidence 43321 11 13456667899999999999999999853 34667878754210 112344543 2221 0
Q ss_pred EECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 167 TLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 167 ~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
......++|+..+ -.+++|++++++.|+++..+
T Consensus 349 ~~~~~~i~ri~~~--g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 349 KPGATKEFKLSTY--GLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred ccCCceEEEEEec--cCCHHHHHHHHHHHHHHHHh
Confidence 1123456776653 46899999999999988664
No 61
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=98.30 E-value=2.9e-05 Score=68.37 Aligned_cols=154 Identities=16% Similarity=0.098 Sum_probs=90.9
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCcc-ccCC-CCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQ-IALS-RRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~t-l~~s-R~~~al~~w~ 98 (218)
.+|.++.++|||++.|.++|+++++++ .. +.+.....+.. -. ..+ +.++ +...+..++.
T Consensus 191 ~~d~~~~s~~K~l~~~~~~G~l~~~~~-~~-~~l~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~ 251 (361)
T cd06452 191 GADFIVGSGHKSMAASAPIGVLATTEE-WA-DIVFRTSQMFK-IK----------------EVELLGCTLRGAPLVTLMA 251 (361)
T ss_pred CCCEEEecCCccccCCCCeEEEEECHH-HH-HHHhccccccc-cc----------------eeeeeccccCchHHHHHHH
Confidence 489999999999999999999998754 33 23222111110 00 001 1111 1123344454
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec--CCCceeEEEEecCC-------C---cchHHHhhc-eeecc
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE--PRKCALVCFRLKPK-------R---ESDGSELNQ-LSLTQ 165 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~--~~~~~iV~Fr~~~~-------~---~~~~~~Ln~-~~vs~ 165 (218)
++..+ .+.+ +++.+..+.++++++.|+++|+++++. +...+++.|+.... . .+..+.|.+ .....
T Consensus 252 al~~~-~~~~-~~~~~~~~~~~~l~~~L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~ 329 (361)
T cd06452 252 SFPHV-KERV-KRWDEEVEKARWFVAELEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGI 329 (361)
T ss_pred HHHHH-HHHH-HHHHHHHHHHHHHHHHHhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEE
Confidence 44433 2333 445555678899999999999999984 34567888886521 0 023344533 22211
Q ss_pred eEECCEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 166 ATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 166 ~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
...-..++|+++. -.+++|++.+++.|+++
T Consensus 330 -~~~~~~~~ri~~~--g~~~e~~~~l~~al~~~ 359 (361)
T cd06452 330 -KPGLTRYFKLSTY--GLTWEQVEYVVDAFKEI 359 (361)
T ss_pred -cCCCceEEEEEec--CCCHHHHHHHHHHHHHH
Confidence 1112347898873 36899999999999865
No 62
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=98.28 E-value=1.1e-05 Score=70.79 Aligned_cols=120 Identities=8% Similarity=-0.043 Sum_probs=73.7
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCch-hHHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKA-LKLWTV 99 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~a-l~~w~~ 99 (218)
++|++++++||| ++|.|+|+++++++... .....+.+..... .. .+ -.++..... +.+..+
T Consensus 190 ~~D~~~~s~~K~-~gp~g~g~l~~~~~~~~--~~~~~~~~~~~~~------------~~--~~-~~gt~~~~~~~al~~a 251 (353)
T TIGR03235 190 RIDLISCSGHKI-YGPKGIGALVIRKRGKP--KAPLKPIMFGGGQ------------ER--GL-RPGTLPVHLIVGMGEA 251 (353)
T ss_pred CCCEEEeehhhc-CCCCceEEEEEccCccc--ccccCceeeCCCC------------cC--cc-ccCCCChHHHHHHHHH
Confidence 699999999999 68999999999987432 1112222222110 00 00 112222221 233334
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC---CceeEEEEecCCCcc-hHHHhhc
Q 041549 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR---KCALVCFRLKPKRES-DGSELNQ 160 (218)
Q Consensus 100 l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~---~~~iV~Fr~~~~~~~-~~~~Ln~ 160 (218)
++.+ .++.+++.++..++++++.+.|++ ++++++.++ ..++++|.+++.+.+ ....|.+
T Consensus 252 l~~~-~~~~~~~~~~~~~l~~~l~~~l~~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~L~~ 314 (353)
T TIGR03235 252 AEIA-RRNAQAWEVKLRAMRNQLRDALQT-LGVKLNGDPAETIPHILNFSIDGVNSEALIVNLRA 314 (353)
T ss_pred HHHH-HhhHHHHHHHHHHHHHHHHHHhcc-CCeEEeCCcccccCCEEEEEeCCcCHHHHHHHHhC
Confidence 4433 246677777778999999999988 799998653 356899988765433 3355654
No 63
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=98.26 E-value=1.2e-05 Score=74.02 Aligned_cols=165 Identities=11% Similarity=0.094 Sum_probs=94.9
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCc----ccccccCCCCCCCCCCCCccCCc-CccccCCCCC-c
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKS----DIMRNRSPASSTSTNVAPVIDYK-DWQIALSRRF-K 92 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~----~yl~~~~~~~~~~~~~~~~~~~~-~~tl~~sR~~-~ 92 (218)
++.+|.++...||||.+|.| |++++++... +.+.... +|.... +.. -+.++++=.. .
T Consensus 234 ~~~~Div~~t~hK~L~GP~G-g~I~~~~~~~--~~~~~g~~~~~d~~~~i--------------~~a~~~~~~g~p~~~~ 296 (475)
T PLN03226 234 FEYCDVVTTTTHKSLRGPRG-GMIFFRKGPK--PPKGQGEGAVYDYEDKI--------------NFAVFPGLQGGPHNHT 296 (475)
T ss_pred CCCCeEEEecCcccccCCCc-eEEEEchhhc--ccccCCCccHHHHHHHh--------------ccccCCccCCCchHHH
Confidence 35799999999999999999 8888876532 1211110 110000 000 0112333111 1
Q ss_pred hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceeEEEEecCC--Ccc-hHHHhhc-------e
Q 041549 93 ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP-RKCALVCFRLKPK--RES-DGSELNQ-------L 161 (218)
Q Consensus 93 al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-~~~~iV~Fr~~~~--~~~-~~~~Ln~-------~ 161 (218)
...+..+++.+-..+++++.++..+++++|++.|.+ .|++++.+ .+.+++.+.+.+. +.. ....|.. .
T Consensus 297 iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~-~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~ 375 (475)
T PLN03226 297 IAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS-KGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKN 375 (475)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh-CCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCC
Confidence 234455666665555556666667999999999999 59999974 2355665555432 322 2233433 1
Q ss_pred eecce--EECCEEEEEEe---cCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 162 SLTQA--TLGGVYVIRCS---IGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 162 ~vs~~--~~~g~~~lR~~---~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
.+... -++ +..+|+- +++...+++||+++.+.|.+.....
T Consensus 376 ~~p~~~~~~~-~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~~ 420 (475)
T PLN03226 376 AVPGDSSALV-PGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTIA 420 (475)
T ss_pred CCCCCcccCC-CCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHHh
Confidence 11100 011 2347761 1356788999999999998887643
No 64
>PLN02452 phosphoserine transaminase
Probab=98.23 E-value=7.4e-06 Score=72.88 Aligned_cols=159 Identities=10% Similarity=0.046 Sum_probs=95.2
Q ss_pred CeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCC-chhHHHHHHH
Q 041549 23 DSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRF-KALKLWTVIR 101 (218)
Q Consensus 23 DSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~-~al~~w~~l~ 101 (218)
|-+....||.+ +|.|.|++++|++.. ...-...+.|+...... . ..+..+|=+. ....+-.+++
T Consensus 192 ~v~~~saqK~l-GP~Gl~~v~vr~~~l-~~~~~~~~~~~~~~~~~---------~----~~s~~~TP~v~~i~~l~~aL~ 256 (365)
T PLN02452 192 GVIYAGAQKNV-GPSGVTIVIIRKDLI-GNARPITPGMLDYKIHA---------E----NDSLYNTPPCFGIYMCGLVFE 256 (365)
T ss_pred CEEEEeccccc-CCCCeEEEEEcHHHH-hhcccCCCchhhHHHHH---------h----cCCccCChhHHHHHHHHHHHH
Confidence 33446999977 599999999998864 22212223333221100 0 0011111111 1223444666
Q ss_pred HhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCe-EEecCC--Cc-eeEEEEecCCCcchHHH----hhc-eeecc--eEEC
Q 041549 102 KHGYS-GLMYHIRSDVNMAKRFEAMVAKDERF-ETVEPR--KC-ALVCFRLKPKRESDGSE----LNQ-LSLTQ--ATLG 169 (218)
Q Consensus 102 ~~G~~-g~~~~i~~~~~la~~l~~~L~~~~~~-el~~~~--~~-~iV~Fr~~~~~~~~~~~----Ln~-~~vs~--~~~~ 169 (218)
.+-.+ |++++.++..++++++.+.|++.++| ....++ ++ .+|+|++.+.. +.+. +.+ .++.- -+.-
T Consensus 257 ~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~~--~~~~f~~~~~~~g~~~~~G~r~~ 334 (365)
T PLN02452 257 DLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGSE--LEAEFVKEAAKAGMVQLKGHRSV 334 (365)
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCch--hHHHHHHHHHHCCCcccCCcccc
Confidence 66554 78888888899999999999998887 221121 34 48999987642 2222 222 33221 1111
Q ss_pred CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 170 GVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 170 g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
|. +|+++-| ..+.++++.|++.+++...+
T Consensus 335 gg--~R~s~yn-a~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 335 GG--MRASIYN-AMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred Cc--eEEECcC-CCCHHHHHHHHHHHHHHHHh
Confidence 22 9999864 99999999999999987543
No 65
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=98.20 E-value=1.6e-05 Score=69.32 Aligned_cols=92 Identities=14% Similarity=0.156 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----CceeEEEEecC---CCc-chHHHhhc--e----eecceEE
Q 041549 104 GYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR-----KCALVCFRLKP---KRE-SDGSELNQ--L----SLTQATL 168 (218)
Q Consensus 104 G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~-----~~~iV~Fr~~~---~~~-~~~~~Ln~--~----~vs~~~~ 168 (218)
..+++.+.+++..++++++.+.|++.|+++++.++ ...+++|++.+ .+. +..+.|.+ + +..+...
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~ 305 (352)
T cd00616 226 QLEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHH 305 (352)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCcccc
Confidence 34566777777789999999999999999988643 34688999874 222 22344443 1 1111100
Q ss_pred C-------------C-------EEEEEEecCCCCCcHHHHHHHHHHHH
Q 041549 169 G-------------G-------VYVIRCSIGTTLTQDRHIDDLRKLIQ 196 (218)
Q Consensus 169 ~-------------g-------~~~lR~~~~n~~tt~~di~~l~~~l~ 196 (218)
+ . ...+|+++ ++++|++||+.+++.|+
T Consensus 306 ~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~-~~~~t~~di~~i~~~l~ 352 (352)
T cd00616 306 QPPYKKLLGYPPGDLPNAEDLAERVLSLPL-HPSLTEEEIDRVIEALR 352 (352)
T ss_pred CHhhhhccCCCcCCChHHHHHHhCeEEccC-CCCCCHHHHHHHHHHhC
Confidence 0 0 15799987 58999999999999874
No 66
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=98.19 E-value=5.9e-05 Score=66.87 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=90.4
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCc-ccccccCCCCCCCCCCCCccCCcCccccCCCCC-chhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKS-DIMRNRSPASSTSTNVAPVIDYKDWQIALSRRF-KALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~-~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~-~al~~w~ 98 (218)
.+|.++.++|||+..+.++|+++.++. .. +.+.... +|..+. .. .+.++... .+...+.
T Consensus 198 ~~di~v~s~sK~~~~~g~~G~l~~~~~-~i-~~l~~~~~~~~~~~-------------~~----~~~~~~~~~~~~~~~~ 258 (370)
T TIGR02539 198 GADFIVGSGHKSMAASGPCGVLGMSEE-WE-DIVLRKSRYSPVKE-------------VE----LLGCTSRGAPIVTMMA 258 (370)
T ss_pred CCCEEEeeCcccccCCCCEEEEEECHH-HH-hhhcccccCCccce-------------ee----eecccccccHHHHHHH
Confidence 489999999999998888999988654 32 3332211 121110 00 01111111 2233333
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe--cCCCceeEEEEecCCC------c----chHHHhhc-eee-c
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV--EPRKCALVCFRLKPKR------E----SDGSELNQ-LSL-T 164 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~--~~~~~~iV~Fr~~~~~------~----~~~~~Ln~-~~v-s 164 (218)
++... .+.+ +..++..+.++++++.|++. +++++ .++..++|.|+.+..+ . ...+.|.+ ..+ .
T Consensus 259 al~~~-~~~l-~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~i 335 (370)
T TIGR02539 259 SFPHV-VERV-KRWDEEVKKTRWFVAELEDI-GFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHGI 335 (370)
T ss_pred HHHHH-HHHH-HHHHHHHHHHHHHHHHHHhC-CcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCccc
Confidence 33221 2222 23344566788999999997 89885 3678889999864321 0 12234433 222 2
Q ss_pred ceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 165 QATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 165 ~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
.. ....++|++++ ..+++|++++++.|+++..+
T Consensus 336 r~--~~~~~iRis~~--~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 336 RS--GQTKYFKLSVY--GLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred cC--CcceEEEEEec--CCCHHHHHHHHHHHHHHHHh
Confidence 21 22458999984 45999999999999887543
No 67
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=98.17 E-value=2.6e-05 Score=69.79 Aligned_cols=160 Identities=17% Similarity=0.112 Sum_probs=84.1
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCC-chhHHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRF-KALKLWTV 99 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~-~al~~w~~ 99 (218)
.+|.++++.|||++.|- +|+||+|... ..+...|++.+..... ++. .|++.. .++-+=.+
T Consensus 233 n~D~~s~s~HK~ygp~~-iGaLYvr~~~---~~~~~~p~~~GGgq~r-----------~~r----sGT~~~~~~~~~gsA 293 (428)
T KOG1549|consen 233 NADFLSISAHKIYGPPG-IGALYVRRKR---PRLRVEPPLSGGGQER-----------GLR----SGTVATPLAVGLGSA 293 (428)
T ss_pred CchheeeecccccCCCc-ceEEEEccCC---CcccccCcccCCcccc-----------ccc----cCCcCchhhhhhHHH
Confidence 58999999999887766 9999999832 2234556665433211 000 011110 11111112
Q ss_pred HHH--hcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCC---ceeEEEEecCCCc----chHHHh----------h
Q 041549 100 IRK--HGYSGLMYHIRSDVNMAKRFEAMVAK-DERFETVEPRK---CALVCFRLKPKRE----SDGSEL----------N 159 (218)
Q Consensus 100 l~~--~G~~g~~~~i~~~~~la~~l~~~L~~-~~~~el~~~~~---~~iV~Fr~~~~~~----~~~~~L----------n 159 (218)
.+. -..+++..++. ++-..+...+.. .+...+..++. -+.+.|.++.... .+.+.+ +
T Consensus 294 ~e~~~~~~~~~~~~~~---~~~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~s~~a~~~~ 370 (428)
T KOG1549|consen 294 AEFVNKEMAYDEAIIK---RLSEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDLKDVALSSGSACTSA 370 (428)
T ss_pred HHHHHhhcchhHHHHH---HHHHHHHHHHhhhCchhhccCCcccccccceeeecccccCcchhhhhhhhhhcccchhhcC
Confidence 222 23344555554 355666666544 55555554421 1344454441110 011111 1
Q ss_pred c---eeecceE----ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 160 Q---LSLTQAT----LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 160 ~---~~vs~~~----~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
. .++.... -.....+|+++. -||+++|++.+++.+.+.+..+.
T Consensus 371 ~~epsy~l~~~G~~~~~~~~~iRis~G-~y~t~~di~~~~~~i~~~v~~~~ 420 (428)
T KOG1549|consen 371 SLEPSYVLRAIGVDEDLAHSSIRISIG-RYTTEEDIDYLVDAIKKLVSLLR 420 (428)
T ss_pred CCCcchhhhhcCcchhhhcceeEEeee-eeCcHHHHHHHHHHHHHHHHhcc
Confidence 1 1111110 012467999997 59999999999999999877654
No 68
>COG3844 Kynureninase [Amino acid transport and metabolism]
Probab=98.13 E-value=4.8e-05 Score=65.85 Aligned_cols=170 Identities=15% Similarity=0.063 Sum_probs=114.0
Q ss_pred CCCCCCeeeecccccCCCccc-eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCc-Ccc-ccCCCCCc--
Q 041549 18 GVELADSVSLNPHKWFLTNMD-CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYK-DWQ-IALSRRFK-- 92 (218)
Q Consensus 18 gi~~aDSi~~d~HK~l~~P~~-~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~-~~t-l~~sR~~~-- 92 (218)
+-.+||+-.+-.||+|++-.| -+++|+.++. .+.+...-+.++++.... ... .|. .++.|+|.
T Consensus 215 h~~gaDfaigcsyKYLNgGPGapa~l~v~~~h-~e~~~~~lsgW~gha~pf-----------~m~~~y~p~~ga~rf~~g 282 (407)
T COG3844 215 HAAGADFAIGCSYKYLNGGPGAPAGLFVAPRH-RERSWPPLSGWWGHARPF-----------AMEEVYAPGPGARRFLCG 282 (407)
T ss_pred cccCCCeeeeeeceeccCCCCCceeEEecccc-ccccccccccccCCCCcc-----------hhhhccCcCccccceeeC
Confidence 346899999999999987544 5566665554 333333334566654321 111 122 36677764
Q ss_pred -----hh-HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC-C--CeEEecC----CCceeEEEEecCCCcchHHHhh
Q 041549 93 -----AL-KLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKD-E--RFETVEP----RKCALVCFRLKPKRESDGSELN 159 (218)
Q Consensus 93 -----al-~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~-~--~~el~~~----~~~~iV~Fr~~~~~~~~~~~Ln 159 (218)
++ .+--+|.-++.-++.+.-++++.|+.+|.+.++.+ + ++++++| .+.+-|+|.++.. ......|-
T Consensus 283 t~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~~-~~V~qaLi 361 (407)
T COG3844 283 TQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPHG-YQVMQALI 361 (407)
T ss_pred CcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCcH-HHHHHHHH
Confidence 22 23334556667778888899999999999999874 3 6899986 3667899988632 22233443
Q ss_pred c-eeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 160 Q-LSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 160 ~-~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
. +.+.. ++-+.+||+.+.-.|++..||-..++.|+++.+++
T Consensus 362 ~rGVigD--~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~t~ 403 (407)
T COG3844 362 DRGVIGD--FREPDVLRFGFTPLYVSFVDVWDAVDALEEVLDTL 403 (407)
T ss_pred HcCcccc--ccCCCeeeecCccceechhHHHHHHHHHHHHHHhh
Confidence 3 44432 45678999999877999999999999999887665
No 69
>PRK07582 cystathionine gamma-lyase; Validated
Probab=98.11 E-value=2.2e-05 Score=69.76 Aligned_cols=145 Identities=18% Similarity=0.190 Sum_probs=91.5
Q ss_pred CCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|.+..++|||+.+|-+ .|+++.+++... +.+.....+.+. ++ ..+..|+
T Consensus 183 g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l~-~~l~~~~~~~g~--------------------~~------~~~~a~l 235 (366)
T PRK07582 183 GADLVVASDTKALTGHSDLLLGYVAGRDPELM-AAVERWRLLAGA--------------------IP------GPFEAWL 235 (366)
T ss_pred CCcEEEecccccccCCCCeeEEEEEcCcHHHH-HHHHHHHHHhCC--------------------CC------CHHHHHH
Confidence 689999999999999877 477777665432 332211111110 01 2445665
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C-----C-----------CceeEEEEecCCCcchH-HHhhc
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P-----R-----------KCALVCFRLKPKRESDG-SELNQ 160 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~-----~-----------~~~iV~Fr~~~~~~~~~-~~Ln~ 160 (218)
.++ |.+.+..++++..+.+..+++.|+++|.++-+. | | ..++++|.+.+ .+.. ..+++
T Consensus 236 ~~r--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~--~~~~~~~~~~ 311 (366)
T PRK07582 236 AHR--SLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELAD--AAAAERFVAA 311 (366)
T ss_pred HHh--ccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCC--HHHHHHHHHh
Confidence 544 445678888999999999999999999987664 2 3 46899999963 3322 33444
Q ss_pred --eeec-------------ceEEC---CEEEEEEecCCCCCcHHHHHHHHHHHHH
Q 041549 161 --LSLT-------------QATLG---GVYVIRCSIGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 161 --~~vs-------------~~~~~---g~~~lR~~~~n~~tt~~di~~l~~~l~~ 197 (218)
.+.. +.... ....||+|++ ....++.|+.+.++|++
T Consensus 312 l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~liR~svG-lE~~~dli~dl~~al~~ 365 (366)
T PRK07582 312 SRLVVAATSFGGVHTSADRRARWGDAVPEGFVRLSCG-IEDTDDLVADLERALDA 365 (366)
T ss_pred CCcceecccCCCccchhhhHHHcCCCCCCCeEEEEec-cCCHHHHHHHHHHHHhh
Confidence 1110 00111 1257999996 56777777777777654
No 70
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=98.10 E-value=2.4e-05 Score=67.49 Aligned_cols=151 Identities=11% Similarity=0.042 Sum_probs=91.3
Q ss_pred CCCCCCeeeecccccCC-CccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHH
Q 041549 18 GVELADSVSLNPHKWFL-TNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKL 96 (218)
Q Consensus 18 gi~~aDSi~~d~HK~l~-~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~ 96 (218)
+...+|.+...+||+++ .+.++|+++++++... +.+.....+.. ++.. ......+
T Consensus 191 ~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~-~~~~~~~~~~~--------------------~~~~---~~~~~~~ 246 (350)
T cd00609 191 DAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELL-ERLKKLLPYTT--------------------SGPS---TLSQAAA 246 (350)
T ss_pred CccCcEEEEeecccccCCcccceEEEecCHHHHH-HHHHHHHHhcc--------------------cCCC---hHHHHHH
Confidence 34457888899999998 6678999998775443 34332111110 0000 0112223
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-Ccch-HHHhhc--eeecceE-E--C
Q 041549 97 WTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-RESD-GSELNQ--LSLTQAT-L--G 169 (218)
Q Consensus 97 w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~~~~-~~~Ln~--~~vs~~~-~--~ 169 (218)
+..++... +++++..++..++++++.+.|++.+...+..++...++.|++.+. +.+. .+.+.+ .++.... . .
T Consensus 247 ~~~l~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~~ 325 (350)
T cd00609 247 AAALDDGE-EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGEG 325 (350)
T ss_pred HHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCCChHHHHHHHHHhCCEEEecccccccC
Confidence 33333322 677777788889999999999998665543334445677777654 2222 334544 3333211 1 2
Q ss_pred CEEEEEEecCCCCCcHHHHHHHHHHHH
Q 041549 170 GVYVIRCSIGTTLTQDRHIDDLRKLIQ 196 (218)
Q Consensus 170 g~~~lR~~~~n~~tt~~di~~l~~~l~ 196 (218)
+..++|++++.+ .+||+.+++.|+
T Consensus 326 ~~~~iRi~~~~~---~~~i~~~~~al~ 349 (350)
T cd00609 326 GEGFVRLSFATP---EEELEEALERLA 349 (350)
T ss_pred CCCeEEEEeeCC---HHHHHHHHHHhh
Confidence 556899999754 999999999886
No 71
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=98.09 E-value=4.6e-05 Score=68.88 Aligned_cols=156 Identities=12% Similarity=0.119 Sum_probs=89.5
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCC-chhHHH
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRF-KALKLW 97 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~-~al~~w 97 (218)
+..+|.++..+|||+.+|.| |++++.++... ..+.. +++.. ++++..+ ....+-
T Consensus 219 ~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~~-~~~~~---~~~~~--------------------~~~~~~~~~~aa~~ 273 (416)
T PRK13034 219 FPHAHVVTTTTHKTLRGPRG-GMILTNDEEIA-KKINS---AVFPG--------------------LQGGPLMHVIAAKA 273 (416)
T ss_pred CCCceEEEEeCcccCCCCCC-eEEEECcHHHH-HHHHh---hcCCc--------------------ccCCccHHHHHHHH
Confidence 46799999999999999987 66666554322 22111 11110 0011001 111111
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceeEEEEecCC--CcchH-HHhhc--eeecceE----
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP-RKCALVCFRLKPK--RESDG-SELNQ--LSLTQAT---- 167 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-~~~~iV~Fr~~~~--~~~~~-~~Ln~--~~vs~~~---- 167 (218)
.++...=..+..++.++..+++++|++.|++. |++++.+ .+++++.+.+.+. +.... +.|.+ .++....
T Consensus 274 ~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~-G~~~~~~~~~t~i~~v~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~ 352 (416)
T PRK13034 274 VAFGEALQPEFKTYAKQVIANAQALAEVLKER-GYDLVSGGTDNHLLLVDLRPKGLSGKDAEQALERAGITVNKNTVPGD 352 (416)
T ss_pred HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCCCCCcEEEEEcCCCCCCHHHHHHHHHhCCcEEeccCCCCC
Confidence 22222211233344566679999999999997 9998853 5667766655433 22223 55655 3443210
Q ss_pred ECC---EEEEEEecCCC----CCcHHHHHHHHHHHHHHHHH
Q 041549 168 LGG---VYVIRCSIGTT----LTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 168 ~~g---~~~lR~~~~n~----~tt~~di~~l~~~l~~~~~~ 201 (218)
.+. ...||+++ +. ..+++||+++++.|.++..+
T Consensus 353 ~~~p~~~~~lR~~~-~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 353 TESPFVTSGIRIGT-PAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred CcCCCCCCeeEeCc-HHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 111 34699997 45 55699999999999988653
No 72
>PRK07179 hypothetical protein; Provisional
Probab=98.08 E-value=2.6e-05 Score=69.97 Aligned_cols=151 Identities=9% Similarity=0.040 Sum_probs=88.9
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcC-CcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST-KSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
+++|.++..+||++..+ .|+++.++. .. +.+.. ..+++.. .+.. ...+..+..
T Consensus 240 ~~vdi~~~S~sK~~g~~--~G~l~~~~~-~~-~~~~~~~~~~~~~-------------------~t~~---~~~~aa~~a 293 (407)
T PRK07179 240 SRVHFITASLAKAFAGR--AGIITCPRE-LA-EYVPFVSYPAIFS-------------------STLL---PHEIAGLEA 293 (407)
T ss_pred CCCCEEEeechHhhhcc--CeEEEeCHH-HH-HHHHHhCcCeeeC-------------------CCCC---HHHHHHHHH
Confidence 36799999999999754 788887653 21 22211 1011110 0110 001122333
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-Ccc-hHHHhhc--ee----ecceEECC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-RES-DGSELNQ--LS----LTQATLGG 170 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~~~-~~~~Ln~--~~----vs~~~~~g 170 (218)
+++.+-. ..++.++..+++++|.+.|++. ++++. ...+++.+..... +.+ ..+.|.+ ++ ..+....+
T Consensus 294 al~~~~~--~~~~~~~l~~~~~~l~~~L~~~-g~~v~--~~~~i~~l~~~~~~~~~~~~~~L~~~GI~~~~~~~p~~~~~ 368 (407)
T PRK07179 294 TLEVIES--ADDRRARLHANARFLREGLSEL-GYNIR--SESQIIALETGSERNTEVLRDALEERNVFGAVFCAPATPKN 368 (407)
T ss_pred HHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCCCC--CCCCEEEEEeCCHHHHHHHHHHHHHCCceEeeecCCCCCCC
Confidence 4444422 2345566678999999999987 78766 3457888876432 111 2234443 22 22221223
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
..+||++++ ..+|++||+++++.|+++..+.
T Consensus 369 ~~~lRis~~-~~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 369 RNLIRLSLN-ADLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred CceEEEEEC-CCCCHHHHHHHHHHHHHHHHhh
Confidence 568999995 6899999999999999876653
No 73
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=97.99 E-value=0.00015 Score=71.20 Aligned_cols=161 Identities=13% Similarity=0.036 Sum_probs=100.7
Q ss_pred CCCCCeeeecccccCC-----CccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccC----CC
Q 041549 19 VELADSVSLNPHKWFL-----TNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIAL----SR 89 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~-----~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~----sR 89 (218)
==+||-+.-+.++|+. +|. +|++.+|+.- .+.+. ...++..... . |...+ .+++|. =|
T Consensus 243 e~GaDi~vg~~q~fg~p~g~GGP~-aG~~a~~~~l--~r~lP--grivG~s~D~-~------G~~~~-~l~LqtReqhIr 309 (939)
T TIGR00461 243 HYGADIVLGSSQRFGVPMGYGGPH-AAFFAVKDEY--NRKMP--GRIVGVSKDA-L------GNTAL-RLALQTREQHIR 309 (939)
T ss_pred HcCCcEEeeCCCccCCCCCCCCCc-eeeeeecHhh--HhhCC--CCceeEEecC-C------CCccc-eeeccccccccc
Confidence 3378988555555655 566 8999999863 34433 2344432110 1 11111 112221 22
Q ss_pred CCc---------hh-HH--HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc-chHH
Q 041549 90 RFK---------AL-KL--WTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE-SDGS 156 (218)
Q Consensus 90 ~~~---------al-~~--w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~-~~~~ 156 (218)
|-. +| ++ ++-+.++|.+|++++-++...+|.++++.|.+ .|+++++++-+..+.+++...+. +..+
T Consensus 310 RekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~-~G~~~~~~~fF~~~~v~~~~~~~~~i~~ 388 (939)
T TIGR00461 310 RDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEN-DPHELINKTWFDTLTVKVGNGISSELLK 388 (939)
T ss_pred ccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCccceEEEEeCCCCHHHHHH
Confidence 222 11 22 22267899999999999999999999999999 69999998778888888742222 2233
Q ss_pred Hhhc-eeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHH
Q 041549 157 ELNQ-LSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQ 196 (218)
Q Consensus 157 ~Ln~-~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~ 196 (218)
++.+ .+.... .+...+++|+. ..+|++||+.+++.+.
T Consensus 389 ~~~~~gi~l~~--~~~~~i~~s~~-E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 389 AAEEFNINLRA--VDTTTVGIALD-ETTTKADVENLLKVFD 426 (939)
T ss_pred HHHHCCCeeee--cCCCEEEEEee-cCCCHHHHHHHHHHhc
Confidence 3333 332221 22246999984 7999999999999995
No 74
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=97.89 E-value=0.00011 Score=65.24 Aligned_cols=151 Identities=11% Similarity=0.017 Sum_probs=86.9
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcC-CcccccccCCCCCCCCCCCCccCCcCccccCCCCCc-hhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST-KSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK-ALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~-al~~w~ 98 (218)
.+|.++..+||++.++ ..|+++.+. ... +.+.. ...|.. .++.... ......
T Consensus 230 ~~di~~~s~sK~l~g~-r~G~~~~~~-~~~-~~l~~~~~~~~~-----------------------~~~~~~~~~~a~~~ 283 (393)
T TIGR01822 230 RVDIITGTLGKALGGA-SGGFTTARK-EVV-ELLRQRSRPYLF-----------------------SNSLPPAVVGASIK 283 (393)
T ss_pred CCeEEEEEChHHhhCC-CcEEEEeCH-HHH-HHHHHhCcccee-----------------------cCCCCHHHHHHHHH
Confidence 6899999999998765 458776543 332 33321 111111 1111111 112223
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-Cc-chHHHhhc--eeecceEE----CC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-RE-SDGSELNQ--LSLTQATL----GG 170 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~~-~~~~~Ln~--~~vs~~~~----~g 170 (218)
+++.+ ++.+++.++..++.+++.+.|++. ++++. ++..+++.+...+. +. +..+.|.+ ++++.... .+
T Consensus 284 al~~~--~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~i~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~ 359 (393)
T TIGR01822 284 VLEML--EASNELRDRLWANTRYFRERMEAA-GFDIK-PADHPIIPVMLYDAVLAQRFARRLLEEGIYVTGFFYPVVPKG 359 (393)
T ss_pred HHHHH--hcCHHHHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCC
Confidence 33333 223445555668999999999885 88765 34566777766432 11 22334433 34432111 23
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
...+|++++ .+++++||+++++.|.++..++
T Consensus 360 ~~~iRis~~-~~~t~edi~~~~~~l~~~~~~~ 390 (393)
T TIGR01822 360 QARIRVQIS-AAHTEEQLDRAVEAFTRIGREL 390 (393)
T ss_pred CceEEEEEC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 356999985 7899999999999999886643
No 75
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=97.85 E-value=0.00013 Score=64.82 Aligned_cols=166 Identities=13% Similarity=0.058 Sum_probs=100.4
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
+++.|-+....+|-++ |.|.+++.+|++.. ...-...|.|+........ +..+ .|++. +....+-.
T Consensus 186 ~~~~dvi~agsQKnlg-P~Gltvvivs~~al-~~~~~~~p~~ldy~~~~~~-----~s~~----nTPpv---~~iy~l~~ 251 (364)
T PRK12462 186 VEAYGMVYAHAQKNLG-PAGVTVAIIRRALL-ERVPDTLPPMLDFRTHVEH-----RSNY----NTPPV---FAIYVMAL 251 (364)
T ss_pred hHHccEEEeeccccCC-CCceEEEEECHHHH-hhccccCCchhhHHHHHhc-----CCCC----CCchH---HHHHHHHH
Confidence 5666999999999998 99999999998864 2222222333321110000 0000 12211 01112222
Q ss_pred HHHHhcHH--HHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C--CCc-eeEEEEecCCCcchHHHh-h---c-eeecceE
Q 041549 99 VIRKHGYS--GLMYHIRSDVNMAKRFEAMVAKDERFETVE-P--RKC-ALVCFRLKPKRESDGSEL-N---Q-LSLTQAT 167 (218)
Q Consensus 99 ~l~~~G~~--g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~--~~~-~iV~Fr~~~~~~~~~~~L-n---~-~~vs~~~ 167 (218)
+++.+=.+ |+.++.+++.+.++.+++.|++.++|.... . .++ ..|||+..+. +.-+++ . + +++.--.
T Consensus 252 ~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~--~l~~~f~~~a~~~gl~~lkG 329 (364)
T PRK12462 252 VLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQP--RLDTLFKEQSTEAGFCGLSG 329 (364)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCH--HHHHHHHHHHHHCCCccccC
Confidence 45555555 899999999999999999999998665542 2 233 5689998643 221222 1 1 3322111
Q ss_pred ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 168 LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 168 ~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
.+..+-+|+|+= +-++.++++.|++.+++..++
T Consensus 330 hr~vgg~Ras~y-na~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 330 HRSIGGIRASLY-NAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred CcccCceEEEcC-CCCCHHHHHHHHHHHHHHHHh
Confidence 111233999984 589999999999999987643
No 76
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=97.83 E-value=0.00039 Score=61.67 Aligned_cols=148 Identities=13% Similarity=0.017 Sum_probs=82.1
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVI 100 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~l 100 (218)
++|.+++++|||+.+|. .|+++.+++ .+ +.... + .... . .....+ +. ..+.+..++
T Consensus 199 g~D~~~~S~~K~l~gp~-~G~l~~~~~-~i-~~~~~---~-~~~~-~--------~~~~~~--~~------~~~gl~aAl 254 (363)
T TIGR01437 199 GADLVIYSGAKAIEGPT-SGLVLGKKK-YI-EWVKL---Q-SKGI-G--------RAMKVG--KE------NILGLTAAL 254 (363)
T ss_pred CCCEEEEeCCcccCCCc-eEEEEEcHH-HH-HHHHh---c-cCCC-c--------ceeccC--HH------HHHHHHHHH
Confidence 48999999999999998 788776433 33 22211 0 0000 0 000000 00 012233333
Q ss_pred H---HhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-------CceeEEEEec--CCCc-chHHHhhc-e--eec
Q 041549 101 R---KHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR-------KCALVCFRLK--PKRE-SDGSELNQ-L--SLT 164 (218)
Q Consensus 101 ~---~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~-------~~~iV~Fr~~--~~~~-~~~~~Ln~-~--~vs 164 (218)
. ..|.+-++++. +.++++.+.|+++|++++..++ ....|.|... +.+. +..+.|.+ . .++
T Consensus 255 ~~~~~~~~~~~~~~~----~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~ 330 (363)
T TIGR01437 255 EQYLSTGKESGAEMV----AKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPAIYT 330 (363)
T ss_pred HHHHccCcccHHHHH----HHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCCEEE
Confidence 3 34555555555 4566799999999999988532 1244566653 2232 33456654 1 222
Q ss_pred ceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 165 QATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 165 ~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
.........+|+.+. .++++|++.+++.|+++
T Consensus 331 r~~~~~~~~~~l~~~--~~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 331 RGYKANEGIIEIDPR--SVTGGQLDIIVERIREI 362 (363)
T ss_pred eeeeecCCeEEEEee--cCCHHHHHHHHHHHHHh
Confidence 211122345787774 46699999999999875
No 77
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=97.83 E-value=0.00023 Score=63.62 Aligned_cols=166 Identities=14% Similarity=0.063 Sum_probs=99.2
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCc-----ccccccCCCCCCCCCCCCcc--CCcCccccCCCCCc
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKS-----DIMRNRSPASSTSTNVAPVI--DYKDWQIALSRRFK 92 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~-----~yl~~~~~~~~~~~~~~~~~--~~~~~tl~~sR~~~ 92 (218)
+.+|-+....+|.+..|.|.|++.++++..- ..-...+ .|+..... +.+ +......+.+ ..
T Consensus 174 d~iDv~~tgsQK~L~~ppGls~v~vs~~Al~-~~~~~~~y~~~~~~~~~~~~---------~~~~~~~~~~~t~~T--P~ 241 (374)
T TIGR01365 174 HKLDVVTFSWQKVLGGEGAHGMLILSPRAVA-RLESYTPAWPLPKIFRLTKG---------GKLNKKIFEGSTINT--PS 241 (374)
T ss_pred hHCcEEEEechhccCCCCceEEEEECHHHHH-HHhhcCCCCCChhhhccccc---------cchhhhhhcCCCCCC--hH
Confidence 3599999999999999999999999998653 2211111 12221110 000 0000000000 01
Q ss_pred hhHHHHH---HHHhcHH-HHHHHHHHHHHHHHHHHHHHhcCCCeEEecC---CCc-eeEEEEecCCC----cch-----H
Q 041549 93 ALKLWTV---IRKHGYS-GLMYHIRSDVNMAKRFEAMVAKDERFETVEP---RKC-ALVCFRLKPKR----ESD-----G 155 (218)
Q Consensus 93 al~~w~~---l~~~G~~-g~~~~i~~~~~la~~l~~~L~~~~~~el~~~---~~~-~iV~Fr~~~~~----~~~-----~ 155 (218)
...+++. ++.+-.+ |+.++.+++.++++.+++.+++.+.++++.+ ..+ .+++|++++.+ +++ .
T Consensus 242 v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~~~~~~~~~~~~~~~~ 321 (374)
T TIGR01365 242 MLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVDPAIDALDEDAQADFA 321 (374)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCCccccccccchhhHHH
Confidence 1233433 4444454 8999999999999999999999844888763 234 46788875431 001 1
Q ss_pred HHhh----c-ee-ecce--EECCEEEEEEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 156 SELN----Q-LS-LTQA--TLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 156 ~~Ln----~-~~-vs~~--~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
+.+. + .+ +... ...| ..+|+.- .+..+.+||+.+++.|+=+-
T Consensus 322 ~~~~~~l~~~gi~i~~G~~~~~~-~~fRIg~-~G~i~~~di~~l~~~l~~~~ 371 (374)
T TIGR01365 322 KELISTLEKEGVAYDIGSYRDAP-SGLRIWC-GATVEKSDLECLCPWLDWAF 371 (374)
T ss_pred HHHHHHHHHCCEEEeccccccCC-CceEEec-CCcCCHHHHHHHHHHHHHHH
Confidence 2222 2 22 3321 1223 6799986 47999999999999987543
No 78
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=97.79 E-value=0.00022 Score=62.36 Aligned_cols=149 Identities=18% Similarity=0.110 Sum_probs=95.3
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhH-HH
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALK-LW 97 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~-~w 97 (218)
-..+||+++-+-|-++.|.+ .+++-+.+..++ ..|..... =++-|..+-+. .|
T Consensus 188 ~~~~D~v~~~~tK~g~~~~g--Aiv~gn~~~~~~-----a~~~rK~~-------------------Ggl~~k~r~laA~~ 241 (342)
T COG2008 188 KSYVDSVSFCLTKGGGAPVG--AIVFGNRDFAKR-----ARRWRKRA-------------------GGLMRKARFLAAQG 241 (342)
T ss_pred HhhCCEEEEecccCCcceee--eEEEcCHHHHHH-----HHHHHHHh-------------------cccHhhhhHHHHHH
Confidence 35789999999999999975 344445443321 12222111 01222223222 22
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc-eeec-ceEECCE--EE
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ-LSLT-QATLGGV--YV 173 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~-~~vs-~~~~~g~--~~ 173 (218)
. -++...-+...-+|.-+||++|++.+.+.||+++..|++.|+|-.+.+.. ..+.+.. .++. ..++.+. ..
T Consensus 242 ~--~~l~~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~~---~i~~l~~~~~~~~~~~~~~~~~~~ 316 (342)
T COG2008 242 L--YALEDDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPES---AIEALRLAGALFYRGVLIGAHGEI 316 (342)
T ss_pred H--HHHhccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECChH---HHHHHHhhchhheeeeeccCCCce
Confidence 2 23444446666777778999999999988999999999999999988642 2233333 2221 1112222 47
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 174 IRCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 174 lR~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
+|++. ++.|+++|||+++..++++.
T Consensus 317 vRfvt-s~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 317 VRFVT-SWATSEEDVDELVAAIKALL 341 (342)
T ss_pred EEEEe-eccCCHHHHHHHHHHHHHhh
Confidence 99986 69999999999999998763
No 79
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=97.73 E-value=0.00056 Score=61.03 Aligned_cols=172 Identities=9% Similarity=0.011 Sum_probs=110.6
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCC-c-ccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTK-S-DIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~-~-~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|-+....+|.+.+|.|.|++.++++.. ....... + -|+.-...... . .......+|.+- ..-..+-.
T Consensus 183 giDv~itgSQK~l~~PPGla~v~~S~~a~-e~~~~~~~~~~ylDL~~~~~~--~---~~~~~~p~Tppv---~~i~aL~~ 253 (383)
T COG0075 183 GIDVAITGSQKALGAPPGLAFVAVSERAL-EAIEERKHPSFYLDLKKWLKY--M---EKKGSTPYTPPV---NLIYALRE 253 (383)
T ss_pred CccEEEecCchhccCCCccceeEECHHHH-HHHhcCCCCceeecHHHHHHH--H---hhcCCCCCCCCH---HHHHHHHH
Confidence 57899999999999999999999998865 2222222 2 23321110000 0 000011122211 01235556
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--Cc-eeEEEEecCCCc--chHH-Hhhc--eeecc--eEE
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR--KC-ALVCFRLKPKRE--SDGS-ELNQ--LSLTQ--ATL 168 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~--~~-~iV~Fr~~~~~~--~~~~-~Ln~--~~vs~--~~~ 168 (218)
+|+.+=.+|++++++++-.+++++++.+++. ||+++.++ .+ .+++|..+..-+ +... .+++ ..++. ..+
T Consensus 254 al~~i~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~~~~~~s~tvta~~~P~g~~~~~~~~~~~~~~g~~i~gg~~~l 332 (383)
T COG0075 254 ALDLILEEGLEARIARHRRLAEALRAGLEAL-GLELFADPERRSPTVTAIKVPEGVDDKKVRRALLKEYGVEIAGGQGPL 332 (383)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCccccCcccCCCceEEEECCCCCCcHHHHHHHHHhCCEEeccccccc
Confidence 7888999999999999999999999999997 99999743 44 455676654321 1222 2333 22332 122
Q ss_pred CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 169 GGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 169 ~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
.| .++|+--+. +.+.+|+...+..|.....++..
T Consensus 333 ~g-kifRIGhMG-~~~~~dv~~~l~ale~~L~~~g~ 366 (383)
T COG0075 333 KG-KIFRIGHMG-NVRPEDVLAALAALEAALRELGV 366 (383)
T ss_pred Cc-cEEEEecCc-cCCHHHHHHHHHHHHHHHHHcCC
Confidence 33 589999876 99999999999999988877644
No 80
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=97.72 E-value=0.00039 Score=62.43 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=68.6
Q ss_pred CCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
+||.+..+.|||+.+|-+ .|++..+++... ..+.....+++. . ......|+
T Consensus 189 GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~~-~~~~~~~~~~G~-------------~-------------~~p~~a~l 241 (388)
T PRK08861 189 GADFVIHSTTKYINGHSDVIGGVLITKTKEHA-EELAWWGNCIGA-------------T-------------GTPFDSYM 241 (388)
T ss_pred CCCEEEeecceeccCCCcceeEEEEecHHHHH-HHHHHHHhccCC-------------C-------------CChHHHHH
Confidence 699999999999999976 677776665332 222110011110 0 12344554
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cC-----C-----------CceeEEEEecC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-EP-----R-----------KCALVCFRLKP 149 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~~-----~-----------~~~iV~Fr~~~ 149 (218)
-..|.+.+.-+++++.+.|..+++.|+++|.++-+ .| | -.++++|.+++
T Consensus 242 --~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~ 307 (388)
T PRK08861 242 --TLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG 307 (388)
T ss_pred --HHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC
Confidence 35688899999999999999999999999998654 33 1 34699999974
No 81
>PLN02271 serine hydroxymethyltransferase
Probab=97.69 E-value=0.00033 Score=65.21 Aligned_cols=174 Identities=9% Similarity=0.069 Sum_probs=96.4
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcC-ccccCCCCCch-hHH
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKD-WQIALSRRFKA-LKL 96 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~-~tl~~sR~~~a-l~~ 96 (218)
+..||.++...||||.+|.| |++++++... ... .+....+...... -+.....|..- .++|++=.... ..+
T Consensus 349 ~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~--~~~--~g~~gs~s~~~~~--~d~~~kI~~aVfPglqgGphn~~IAal 421 (586)
T PLN02271 349 FDYCDIVTSTTHKSLRGPRG-GIIFYRKGPK--LRK--QGMLLSHGDDNSH--YDFEEKINFAVFPSLQGGPHNNHIAAL 421 (586)
T ss_pred CcCCcEEEeCCcccCCCCCc-eEEEeccccc--ccc--cCCcccccccccc--HHHHHHhhcccCCccccChhHHHHHHH
Confidence 56799999999999999999 9999876532 111 1111111110000 00000011110 13444322222 234
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceeEEEEecCCC--cch-HHHhhceeec------ce
Q 041549 97 WTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP-RKCALVCFRLKPKR--ESD-GSELNQLSLT------QA 166 (218)
Q Consensus 97 w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-~~~~iV~Fr~~~~~--~~~-~~~Ln~~~vs------~~ 166 (218)
-.+++..-...+++..++.+++|+.|++.|.+. |+++++. .+..+|...+.+.+ ... ...|....++ +.
T Consensus 422 Avalkea~~~efk~Ya~QVv~NAkaLA~~L~~~-G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~ 500 (586)
T PLN02271 422 AIALKQVATPEYKAYMQQVKKNAQALASALLRR-KCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFG 500 (586)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHC-CCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCC
Confidence 446777666677788888899999999999996 9999963 46667766665432 111 2333331111 10
Q ss_pred E--ECCEEEEEEecC---CCCCcHHHHHHHHHHHHHHHH
Q 041549 167 T--LGGVYVIRCSIG---TTLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 167 ~--~~g~~~lR~~~~---n~~tt~~di~~l~~~l~~~~~ 200 (218)
. .-.+..||+-.. .--..++|++++.+.|.+...
T Consensus 501 d~~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 501 DNGTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CCCCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 0 001234886541 123456888888888887765
No 82
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=97.65 E-value=0.00042 Score=62.01 Aligned_cols=100 Identities=18% Similarity=0.194 Sum_probs=70.3
Q ss_pred CCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|-+..+++||+.++.+ .|++.++++... +.+.....+++. + ...+..|+
T Consensus 187 gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~~-~~l~~~~~~~g~--------------------~------~sp~~a~l 239 (382)
T TIGR02080 187 GADLVLHSCTKYLNGHSDVIAGAVIAKDPQVA-EELAWWANNLGV--------------------T------GGAFDSYL 239 (382)
T ss_pred CCCEEEeecceeccCCCCceeEEEEeCCHHHH-HHHHHHHHccCC--------------------C------CCHHHHHH
Confidence 579999999999998876 777777776543 222111111110 1 13556676
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C-----C-----------CceeEEEEecC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P-----R-----------KCALVCFRLKP 149 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~-----~-----------~~~iV~Fr~~~ 149 (218)
.++ |.+.+..++++..+.+..+++.|+++|.++-+. | | -.++++|.+++
T Consensus 240 ~lr--~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 305 (382)
T TIGR02080 240 TLR--GLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKG 305 (382)
T ss_pred HHc--ccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecC
Confidence 644 778899999999999999999999999887553 3 1 24699999974
No 83
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=97.65 E-value=0.00048 Score=61.70 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=68.5
Q ss_pred CCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
+||-+..++|||+.++-+ .|++.++++... +.+.....++ +.. ...+..|+
T Consensus 188 gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~~-~~l~~~~~~~----------------------g~~----~~p~~~~l 240 (386)
T PRK08045 188 GADLVLHSCTKYLNGHSDVVAGVVIAKDPDVV-TELAWWANNI----------------------GVT----GGAFDSYL 240 (386)
T ss_pred CCCEEEeecceeccCCCCceeEEEEeCcHHHH-HHHHHHHHhc----------------------CCC----CCHHHHHH
Confidence 679999999999999887 677776665432 2221100111 010 13456676
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cC-----C-----------CceeEEEEecC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-EP-----R-----------KCALVCFRLKP 149 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~~-----~-----------~~~iV~Fr~~~ 149 (218)
.++ |.+.+..++++..+.+..+++.|+++|.++-+ .| | -.++++|.+++
T Consensus 241 ~~r--gl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~ 306 (386)
T PRK08045 241 LLR--GLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG 306 (386)
T ss_pred HHh--hhccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecC
Confidence 654 44569999999999999999999999998655 23 1 24699999975
No 84
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=97.64 E-value=0.00066 Score=60.94 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=89.6
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcC-CcccccccCCCCCCCCCCCCccCCcCccccCCCCC-chhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST-KSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRF-KALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~-~al~~w~ 98 (218)
.+|.++.++|||+.+|.+ |++++.++... +.+.. ...+.. ++-.. ....++.
T Consensus 218 ~~di~~~S~~K~l~g~~g-g~i~~~~~~~~-~~l~~~~~~~~~------------------------~~~~~~~~aa~~~ 271 (416)
T PRK00011 218 HADVVTTTTHKTLRGPRG-GLILTNDEELA-KKINSAVFPGIQ------------------------GGPLMHVIAAKAV 271 (416)
T ss_pred CCcEEEecCCcCCCCCCc-eEEEeCCHHHH-HHHHHHhCcccc------------------------CCccHHHHHHHHH
Confidence 689999999999987775 56666554433 33221 101100 00001 1123334
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CCCceeEEEEecCC--Cc-chHHHhhc-e-eecc----e--
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-PRKCALVCFRLKPK--RE-SDGSELNQ-L-SLTQ----A-- 166 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~~~~~iV~Fr~~~~--~~-~~~~~Ln~-~-~vs~----~-- 166 (218)
++.....+++.+++++..++++++.+.|++. ++++.. .+..+++.+.+.+. +. +..+.|.+ . .+.. -
T Consensus 272 a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~ 350 (416)
T PRK00011 272 AFKEALEPEFKEYAQQVVKNAKALAEALAER-GFRVVSGGTDNHLVLVDLRSKGLTGKEAEAALEEANITVNKNAVPFDP 350 (416)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhC-CCeeeecCCCCeEEEEeCcccCCCHHHHHHHHHHcCcEEccCcCCCCC
Confidence 4444555677888888899999999999986 888763 23457777777543 21 22344544 2 2221 0
Q ss_pred -EECCEEEEEEecCC---CCCcHHHHHHHHHHHHHHHH
Q 041549 167 -TLGGVYVIRCSIGT---TLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 167 -~~~g~~~lR~~~~n---~~tt~~di~~l~~~l~~~~~ 200 (218)
.......+|++... ...+++|++.+++.|+++..
T Consensus 351 ~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~ 388 (416)
T PRK00011 351 RSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLD 388 (416)
T ss_pred CCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHh
Confidence 00112358985421 14569999999999988644
No 85
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=97.64 E-value=0.00031 Score=61.00 Aligned_cols=89 Identities=10% Similarity=0.024 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecC-CCc-chHHHhhc--eeecceEE----CCEEEEEEecC
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKP-KRE-SDGSELNQ--LSLTQATL----GGVYVIRCSIG 179 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~-~~~-~~~~~Ln~--~~vs~~~~----~g~~~lR~~~~ 179 (218)
+.+..++..++++++.+.|.+. +++++.++...+.++...+ .+. +..+.|.+ +++++... .+..++|++++
T Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~~~~~~~~~iRi~~~ 330 (349)
T cd06454 252 GPERRERLQENVRYLRRGLKEL-GFPVGGSPSHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTVPRGTARLRISLS 330 (349)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc-CCcccCCCCCcEEEEeCCChHHHHHHHHHHHhCCceEEEecCCccCCCCCeEEEEEe
Confidence 3455666678999999999986 7887766555666665432 111 22233333 33332111 12368999985
Q ss_pred CCCCcHHHHHHHHHHHHHH
Q 041549 180 TTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 180 n~~tt~~di~~l~~~l~~~ 198 (218)
.+++++|++++++.|++.
T Consensus 331 -~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 331 -AAHTKEDIDRLLEALKEV 348 (349)
T ss_pred -CCCCHHHHHHHHHHHHHh
Confidence 689999999999999875
No 86
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=97.63 E-value=0.00058 Score=60.87 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=86.3
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcC-CcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST-KSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTV 99 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~ 99 (218)
.+|.++.++|||+.+|.+ |++++.++... +.+.. ..++... . ... .....+-.+
T Consensus 214 ~~dv~~~s~sK~l~G~~g-g~i~~~~~~~~-~~l~~~~~~~~~~-------------~-----~~~-----~~~~a~~~a 268 (402)
T cd00378 214 GADVVTTTTHKTLRGPRG-GLILTRKGELA-KKINSAVFPGLQG-------------G-----PHL-----HVIAAKAVA 268 (402)
T ss_pred CCcEEEeccccCCCCCCc-eEEEeccHHHH-HHHHHHhCccccC-------------C-----chH-----HHHHHHHHH
Confidence 679999999999988776 55555553332 33321 1011000 0 000 011111122
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CCCceeEEEEecCCC--cch-HHHhhc--eeec----ceEE-
Q 041549 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-PRKCALVCFRLKPKR--ESD-GSELNQ--LSLT----QATL- 168 (218)
Q Consensus 100 l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~~~~~iV~Fr~~~~~--~~~-~~~Ln~--~~vs----~~~~- 168 (218)
+...-..++.++.++..++++++.+.|++. +++++. +...+++.++..+.. ... ...|.+ +.+. +...
T Consensus 269 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~l~~~gI~v~~~~~p~~~~ 347 (402)
T cd00378 269 LKEALEPEFKAYAKQVVENAKALAEALKER-GFKVVSGGTDNHLVLVDLRPKGITGKAAEDALEEAGITVNKNTLPWDPS 347 (402)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhC-CCeEeecCCCCeEEEEeCCccCCCHHHHHHHHHHcCcEEcCCcCCCCCC
Confidence 332222355667777789999999999997 898874 445677777775322 121 233433 2232 1111
Q ss_pred --CCEEEEEEecCCCCC----cHHHHHHHHHHHHHHHH
Q 041549 169 --GGVYVIRCSIGTTLT----QDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 169 --~g~~~lR~~~~n~~t----t~~di~~l~~~l~~~~~ 200 (218)
.+...+|++++ ..+ +++||+.+++.|+++..
T Consensus 348 ~~~~~~~lRi~~~-~~~~~~~~~~di~~~~~~l~~~~~ 384 (402)
T cd00378 348 SPFVPSGIRIGTP-AMTTRGMGEEEMEEIADFIARALK 384 (402)
T ss_pred CCCCCCeeEecCH-HHHHhCCCHHHHHHHHHHHHHHHh
Confidence 12357999874 433 69999999999988653
No 87
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=97.61 E-value=0.00034 Score=62.24 Aligned_cols=101 Identities=15% Similarity=0.173 Sum_probs=71.8
Q ss_pred CCCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHH
Q 041549 20 ELADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLW 97 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w 97 (218)
.+||.++.++|||+.++-+ .|++.++++... +.+.. + .. . . | -....+..|
T Consensus 186 ~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~-~~~~~---~-~~-~-----------------~---G-~~~s~~~a~ 238 (364)
T PRK07269 186 LGADIVLHSATKYLSGHNDVLAGVVVTNDLELY-EKLFY---N-LN-T-----------------T---G-AVLSPFDSY 238 (364)
T ss_pred hCCcEEEecCceeccCCCcccceEEEeCcHHHH-HHHHH---H-HH-H-----------------h---C-CCCCHHHHH
Confidence 3799999999999999876 677777766432 22211 0 00 0 0 0 012455666
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cCCCceeEEEEecC
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-EPRKCALVCFRLKP 149 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~~~~~~iV~Fr~~~ 149 (218)
+.+ .|.+.+..++++..+.++++++.|+++|.++-+ .|+..++++|...+
T Consensus 239 l~~--~~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~ypg~gg~~sf~~~~ 289 (364)
T PRK07269 239 LLM--RGLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYTGKGGMISFKVAD 289 (364)
T ss_pred HHH--cCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCCCcCcEEEEEECC
Confidence 654 455669999999999999999999999997555 48888999999863
No 88
>PRK08114 cystathionine beta-lyase; Provisional
Probab=97.59 E-value=0.00069 Score=60.94 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=68.6
Q ss_pred CCCeeeecccccCCCc--cceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTN--MDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P--~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
+||.+..+.|||+++| ..+|+++.++. .. ..+.. +.. . . |+ -......|+
T Consensus 200 GaDivv~S~tKyl~Ghsdv~~G~v~~~~~-~~-~~l~~---~~~--~--------------~------G~-~~~p~~a~l 251 (395)
T PRK08114 200 GIDISIQAGTKYLVGHSDAMIGTAVANAR-CW-EQLRE---NSY--L--------------M------GQ-MVDADTAYM 251 (395)
T ss_pred CCcEEEEcCcccccCCCcceeEEEEcCHH-HH-HHHHH---HHH--h--------------c------cC-CCCHHHHHH
Confidence 5999999999999999 58887765432 21 11110 000 0 0 00 113455664
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cC----------------CCceeEEEEecCC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-EP----------------RKCALVCFRLKPK 150 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~~----------------~~~~iV~Fr~~~~ 150 (218)
. ..|.+.+.-+++++.+.|..+++.|+++|.++-+ .| .-.++++|.+++.
T Consensus 252 ~--~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~ 318 (395)
T PRK08114 252 T--SRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKK 318 (395)
T ss_pred H--HcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCc
Confidence 3 4688899999999999999999999999998644 33 1356999999753
No 89
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=97.59 E-value=0.00037 Score=61.86 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=88.6
Q ss_pred CCCeeeecccccCCCcc--ceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNM--DCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~--~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|.+..+++|++.++- ..|+++.+++... +.+.....+++ .++ ..+..|+
T Consensus 176 g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l~-~~l~~~~~~~g--------------------~~~------~p~~a~~ 228 (369)
T cd00614 176 GADIVVHSATKYIGGHSDVIAGVVVGSGEALI-QRLRFLRLALG--------------------TIL------SPFDAWL 228 (369)
T ss_pred CCcEEEeccceeccCCCCceEEEEEeCcHHHH-HHHHHHHHhhC--------------------CCC------CHHHHHH
Confidence 68999999999999874 3677777663332 22221101100 111 2345666
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----------------CceeEEEEecCCCcchH-HHhhc
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR-----------------KCALVCFRLKPKRESDG-SELNQ 160 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~-----------------~~~iV~Fr~~~~~~~~~-~~Ln~ 160 (218)
.++. .+.+..++++..+.++++++.|+++|+++-+.-| ..++++|.+++ +.+.. ..++.
T Consensus 229 ~l~~--l~tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~-~~~~~~~f~~~ 305 (369)
T cd00614 229 LLRG--LKTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG-GLEAAKKFLNA 305 (369)
T ss_pred HHcC--CCCHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC-CHHHHHHHHHc
Confidence 5444 4667788999999999999999999987655422 37899999975 32222 22333
Q ss_pred ---e-----------eec------ceEE-------CC--EEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 161 ---L-----------SLT------QATL-------GG--VYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 161 ---~-----------~vs------~~~~-------~g--~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
. .+. +... .| ...+|++++- ||++.+++.|++.
T Consensus 306 l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl-----E~~~dl~~dl~~a 367 (369)
T cd00614 306 LKLFSLAVSLGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGI-----EDVEDLIADLEQA 367 (369)
T ss_pred CCcceEcccCCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCc-----CCHHHHHHHHHHh
Confidence 0 011 1001 12 3579999974 5788888888764
No 90
>PRK06767 methionine gamma-lyase; Provisional
Probab=97.57 E-value=0.00039 Score=62.18 Aligned_cols=101 Identities=16% Similarity=0.269 Sum_probs=66.5
Q ss_pred CCCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHH
Q 041549 20 ELADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLW 97 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w 97 (218)
.++|.+...++|++.++-+ .|+++.+++.. ..........++ +. + ..+..|
T Consensus 196 ~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~i-~~~~~~~~~~~g-------------~~-------~------~~~~a~ 248 (386)
T PRK06767 196 LGCDAVVHSATKYIGGHGDVVAGVTICKTRAL-AEKIRPMRKDIG-------------GI-------M------APFDAW 248 (386)
T ss_pred cCCcEEEecCcceecCCCCceeEEEEeChHHH-HHHHHHHHHHhC-------------CC-------C------CHHHHH
Confidence 4689999999999988865 57777665432 111111000000 00 1 234456
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-----------CCceeEEEEecC
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP-----------RKCALVCFRLKP 149 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-----------~~~~iV~Fr~~~ 149 (218)
+.++ |.+.+..++++..++++++++.|+++|+++.+.- ...++|+|.+++
T Consensus 249 l~~~--~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~ 309 (386)
T PRK06767 249 LLLR--GLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKG 309 (386)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcC
Confidence 5543 4456667888889999999999999999987652 246899999974
No 91
>PRK08064 cystathionine beta-lyase; Provisional
Probab=97.56 E-value=0.00081 Score=60.28 Aligned_cols=145 Identities=19% Similarity=0.281 Sum_probs=92.0
Q ss_pred CCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|.+..++|||+.+|-+ .|+++++++... +.+.. +... ++. ...+...|.
T Consensus 189 g~Divv~S~tK~~~G~~~~laG~~v~~~~~~~-~~l~~----~~~~------------------~g~----~~~~~~a~l 241 (390)
T PRK08064 189 GADVVLHSATKFLAGHSDVLAGLAVVKDEELA-QKLYF----LQNS------------------FGA----VLGVQDCWL 241 (390)
T ss_pred CCcEEEeecceeccCCccceeEEEEeCCHHHH-HHHHH----HHHh------------------cCC----CCCHHHHHH
Confidence 589999999999999987 588888775443 22211 0000 111 012345665
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeE-EecC----------------CCceeEEEEecCCCcchH-HHhhc
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFE-TVEP----------------RKCALVCFRLKPKRESDG-SELNQ 160 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~e-l~~~----------------~~~~iV~Fr~~~~~~~~~-~~Ln~ 160 (218)
.+ .|.+.+..++++..+.+..+++.|+++|.+. +..| ...++++|.+.+. +.. ..++.
T Consensus 242 ~~--~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~--~~~~~f~~~ 317 (390)
T PRK08064 242 VL--RGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSE--EAVRQFVSH 317 (390)
T ss_pred HH--cccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCH--HHHHHHHHh
Confidence 43 5777788999999999999999999998763 3322 1456999999642 222 22222
Q ss_pred --e------------ee------cceE-------ECC--EEEEEEecCCCCCcHHHHHHHHHHHHH
Q 041549 161 --L------------SL------TQAT-------LGG--VYVIRCSIGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 161 --~------------~v------s~~~-------~~g--~~~lR~~~~n~~tt~~di~~l~~~l~~ 197 (218)
. .+ ++.. ..| ...+|+|++ .+..++.|+.+.++|++
T Consensus 318 l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvG-le~~~dli~dl~~Al~~ 382 (390)
T PRK08064 318 VKLPVFAVSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVG-LENVDDLIADFEQALSY 382 (390)
T ss_pred CCcceEcccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEec-cCCHHHHHHHHHHHHHh
Confidence 0 01 1110 012 357999997 67888888888888875
No 92
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=97.54 E-value=0.00082 Score=59.57 Aligned_cols=82 Identities=10% Similarity=0.098 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc-chHHHhhc--eeecceEECCEEEEEEecCCCCCcHHHH
Q 041549 112 IRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE-SDGSELNQ--LSLTQATLGGVYVIRCSIGTTLTQDRHI 188 (218)
Q Consensus 112 i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~-~~~~~Ln~--~~vs~~~~~g~~~lR~~~~n~~tt~~di 188 (218)
.++..++.++|.+.|.... + ..++.|.+++... +..+.|.+ .+++........+||+++ +.++|++||
T Consensus 267 ~~~l~~l~~~l~~~l~~~~-------~-~~~~~i~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~iRis~-~~~~t~edi 337 (370)
T PRK05937 267 RKQLFRLKEYFAQKFSSAA-------P-GCVQPIFLPGISEQELYSKLVETGIRVGVVCFPTGPFLRVNL-HAFNTEDEV 337 (370)
T ss_pred HHHHHHHHHHHHHhcCCCC-------C-CCEEEEEeCChhHHHHHHHHHHCCeeEEeeCCCCCCEEEEEc-CCCCCHHHH
Confidence 3455678888888876421 1 1123355543322 22344543 334322122234799999 579999999
Q ss_pred HHHHHHHHHHHHHH
Q 041549 189 DDLRKLIQEKADRL 202 (218)
Q Consensus 189 ~~l~~~l~~~~~~~ 202 (218)
|++++.|+++.++.
T Consensus 338 d~l~~~L~~~~~~~ 351 (370)
T PRK05937 338 DILVSVLATYLEKY 351 (370)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876554
No 93
>PLN02509 cystathionine beta-lyase
Probab=97.47 E-value=0.0012 Score=60.69 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=67.8
Q ss_pred CCCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHH
Q 041549 20 ELADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLW 97 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w 97 (218)
.++|.+..++|||+.+|-+ .|+++++++... ..+. .+.... +. .......|
T Consensus 267 ~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~-~~~~----~~~~~~----------g~------------~l~p~~A~ 319 (464)
T PLN02509 267 LGADIVMHSATKFIAGHSDVMAGVLAVKGEKLA-KEVY----FLQNSE----------GS------------GLAPFDCW 319 (464)
T ss_pred cCCcEEEecCcccccCCCccceeEEEeccHHHH-HHHH----HHHHhc----------CC------------CcCHHHHH
Confidence 3689999999999999877 888888776532 2111 011000 00 01234456
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cC-----C-----------CceeEEEEe
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-EP-----R-----------KCALVCFRL 147 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~~-----~-----------~~~iV~Fr~ 147 (218)
+. ..|.+.+..++++..+.|+++++.|+++|.++-+ .| | -.++++|..
T Consensus 320 l~--lr~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~ 384 (464)
T PLN02509 320 LC--LRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT 384 (464)
T ss_pred HH--HhhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEe
Confidence 54 3466778899999999999999999999998544 33 1 256999988
No 94
>PRK06434 cystathionine gamma-lyase; Validated
Probab=97.43 E-value=0.001 Score=59.63 Aligned_cols=101 Identities=14% Similarity=0.205 Sum_probs=69.4
Q ss_pred CCCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHH
Q 041549 20 ELADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLW 97 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w 97 (218)
.+||.+..++||++.++-+ -|++.++++... +.+.. +.. . ++ .....+..|
T Consensus 196 ~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~-~~~~~----~~~-~-----------------~G----~~~~~~~A~ 248 (384)
T PRK06434 196 LGADVVIHSATKYISGHSDVVMGVAGTNNKSIF-NNLVE----RRK-T-----------------LG----SNPDPIQAY 248 (384)
T ss_pred cCCCEEEeecccccCCCCCceEEEEecCcHHHH-HHHHH----HHH-h-----------------cC----CCCCHHHHH
Confidence 3699999999999999876 677777665432 22110 100 0 00 001245555
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cCC----------CceeEEEEecC
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-EPR----------KCALVCFRLKP 149 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~~~----------~~~iV~Fr~~~ 149 (218)
+. ..|.+.+..++++..+.|+.+++.|+++|.++-+ .|. -.++++|.+++
T Consensus 249 l~--~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~ 309 (384)
T PRK06434 249 LA--LRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRS 309 (384)
T ss_pred HH--HhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECC
Confidence 44 5677889999999999999999999999998544 332 35799999974
No 95
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=97.31 E-value=0.0023 Score=57.14 Aligned_cols=102 Identities=15% Similarity=0.189 Sum_probs=67.1
Q ss_pred CCCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHH
Q 041549 20 ELADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLW 97 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w 97 (218)
-+||.+..+.|||++++-+ .|++..+++ .. +.+.. ..++. + .++ .+...|
T Consensus 185 ~gaDivv~S~tK~l~G~~d~~gG~v~~~~~-~~-~~l~~-~~~~~------------------G-~~l------~p~~a~ 236 (377)
T TIGR01324 185 HGVDISIQAGTKYLVGHSDIMIGTVVANAR-TW-DQLRE-HSYLM------------------G-QMV------DADDAY 236 (377)
T ss_pred cCceEEEecCceeccCCCCceEEEEEeCHH-HH-HHHHH-HHHHh------------------C-CCC------CHHHHH
Confidence 3789999999999999865 566665443 32 22211 01110 0 011 234566
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cC----------------CCceeEEEEecCCC
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-EP----------------RKCALVCFRLKPKR 151 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~~----------------~~~~iV~Fr~~~~~ 151 (218)
..++ |.+.+..++++..+.|..+++.|+++|.++-+ .| .-.++++|++++.+
T Consensus 237 ~~~r--gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~ 305 (377)
T TIGR01324 237 TTLR--GLRTLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT 305 (377)
T ss_pred HHHh--hhhhHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC
Confidence 5554 66788888999999999999999999988444 33 12579999997533
No 96
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=97.31 E-value=0.0015 Score=58.38 Aligned_cols=101 Identities=19% Similarity=0.240 Sum_probs=67.1
Q ss_pred CCCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHH
Q 041549 20 ELADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLW 97 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w 97 (218)
-++|.+..++|||+.+|-+ .|++..+++... ..+.. +... + +........|
T Consensus 184 ~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~-~~~~~----~~~~--------------------~--G~~~~~~~~~ 236 (380)
T PRK06176 184 LGADIVVHSGTKYLGGHSDVVAGLVTTNNEALA-QEIAF----FQNA--------------------I--GGVLGPQDSW 236 (380)
T ss_pred cCCCEEEecCceeccCCccceeeEEEecHHHHH-HHHHH----HHHH--------------------h--cCCCCHHHHH
Confidence 3789999999999999864 677776665432 22211 1100 0 0001123345
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C-----C-----------CceeEEEEecC
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P-----R-----------KCALVCFRLKP 149 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~-----~-----------~~~iV~Fr~~~ 149 (218)
..+ .|.+.+..++++..+.+..+++.|+++|.++-+. | | -.++++|.+++
T Consensus 237 l~~--~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 303 (380)
T PRK06176 237 LLQ--RGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKN 303 (380)
T ss_pred HHH--hccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC
Confidence 443 4778889999999999999999999999886553 2 1 24689999974
No 97
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=97.31 E-value=0.0019 Score=56.89 Aligned_cols=99 Identities=13% Similarity=0.129 Sum_probs=63.5
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-Cc-chHHHhhc--eeecceE---
Q 041549 95 KLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-RE-SDGSELNQ--LSLTQAT--- 167 (218)
Q Consensus 95 ~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~~-~~~~~Ln~--~~vs~~~--- 167 (218)
.++.+++.+... .++.++..++.+++.+.|++. +++++ ++..++++|.++.. +. +..+.|.+ +.+.+..
T Consensus 278 a~~aal~~~~~~--~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~ 353 (385)
T PRK05958 278 AARAALRILRRE--PERRERLAALIARLRAGLRAL-GFQLM-DSQSAIQPLIVGDNERALALAAALQEQGFWVGAIRPPT 353 (385)
T ss_pred HHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHc-CCCcC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCceEecccCCC
Confidence 344455544322 455667778999999999986 67754 46778888887532 11 22344433 3343211
Q ss_pred -ECCEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 168 -LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 168 -~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
-.+..++|++++ .+++++|++++++.|++.
T Consensus 354 ~~~~~~~lRis~~-~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 354 VPAGTSRLRITLT-AAHTEADIDRLLEALAEA 384 (385)
T ss_pred CCCCCceEEEEec-CCCCHHHHHHHHHHHHhc
Confidence 123468999994 688999999999999764
No 98
>PRK05968 hypothetical protein; Provisional
Probab=97.29 E-value=0.0039 Score=55.90 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=66.1
Q ss_pred CCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcC-CcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHH
Q 041549 21 LADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQST-KSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLW 97 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w 97 (218)
++|.+..++||++.+|-+ .|+++. ++... +.+.. ..++++ ..+ ..+..|
T Consensus 198 g~Divv~S~tK~l~g~~~~~gG~i~~-~~~~~-~~l~~~~~~~~g--------------------~~~------~~~~A~ 249 (389)
T PRK05968 198 GVDLVIHSASKYLGGHSDTVAGVVAG-SKEHI-ARINAEAYPYLG--------------------AKL------SPFEAW 249 (389)
T ss_pred CCcEEEeeccccccCCCCeEEEEEEE-CHHHH-HHHHHHHHHhCC--------------------CCC------ChHHHH
Confidence 579999999999999854 566654 44333 22211 101111 001 134455
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC------------CceeEEEEecC
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR------------KCALVCFRLKP 149 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~------------~~~iV~Fr~~~ 149 (218)
+. ..|.+.+..++++..+.++++++.|+++|+++.+..| ..++++|.+.+
T Consensus 250 ~~--l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~ 311 (389)
T PRK05968 250 LL--LRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFRE 311 (389)
T ss_pred HH--HcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECC
Confidence 44 4566678999999999999999999999999777633 14699999974
No 99
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=97.27 E-value=0.0017 Score=57.95 Aligned_cols=99 Identities=16% Similarity=0.215 Sum_probs=66.7
Q ss_pred CCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|.+..++|||+++|-+ .|+++++++... +.+.. +..... .. ...+..|+
T Consensus 182 g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~-~~~~~---~~~~~G-----------------~~------~~~~~a~l 234 (378)
T TIGR01329 182 GADIVYHSATKFLAGHSDVMAGVLAVKGEEIA-KKVYF---LQNSTG-----------------SG------LAPFDCWL 234 (378)
T ss_pred CCcEEEEecceeccCCccceeEEEEeCcHHHH-HHHHH---HHHhcC-----------------Cc------CCHHHHHH
Confidence 689999999999999977 899998776532 22211 110000 00 11223344
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeE-EecC----------------CCceeEEEEec
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFE-TVEP----------------RKCALVCFRLK 148 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~e-l~~~----------------~~~~iV~Fr~~ 148 (218)
. ..|.+.+..++++..+.+..+++.|+++|.++ +..| ...++++|.+.
T Consensus 235 ~--~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~ 299 (378)
T TIGR01329 235 L--LRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETG 299 (378)
T ss_pred H--HccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEEC
Confidence 3 45778899999999999999999999998863 3322 13479999993
No 100
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=97.25 E-value=0.0031 Score=57.47 Aligned_cols=55 Identities=15% Similarity=0.350 Sum_probs=42.4
Q ss_pred hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C-----C------------CceeEEEEecC
Q 041549 93 ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P-----R------------KCALVCFRLKP 149 (218)
Q Consensus 93 al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~-----~------------~~~iV~Fr~~~ 149 (218)
....|+. ..|.+.+..++++..+.|.++++.|+++|.++-+. | | -.++++|.+++
T Consensus 288 p~~a~l~--~rgl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~~ 360 (437)
T PRK05613 288 PFNAWVT--AQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKG 360 (437)
T ss_pred HHHHHHH--HcccCcHHHHHHHHHHHHHHHHHHHHcCCCcceEECCCCCCCccHHHHHHhcCCCCceEEEEEecC
Confidence 3445543 46889999999999999999999999999985442 2 1 14599999975
No 101
>PRK09028 cystathionine beta-lyase; Provisional
Probab=97.24 E-value=0.0033 Score=56.56 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=66.5
Q ss_pred CCCeeeecccccCCCc--cceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTN--MDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P--~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
+||.+..+.|||++++ .-.|++ +.++... +.+.....+++ . -......|+
T Consensus 197 GaDivv~S~tK~l~Gh~d~~~G~~-~~~~~~~-~~l~~~~~~~G--------------~------------~~~p~~a~l 248 (394)
T PRK09028 197 GVDISIQAATKYIVGHSDVMLGTA-TANEKHW-DQLREHSYLMG--------------Q------------CTSPDDVYL 248 (394)
T ss_pred CceEEEEeCCeEecCCCCEEEEEE-ECCHHHH-HHHHHHHHhcC--------------C------------CCCHHHHHH
Confidence 5999999999999999 223444 4444322 21211000000 0 013455665
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cC----------------CCceeEEEEecCCC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-EP----------------RKCALVCFRLKPKR 151 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~~----------------~~~~iV~Fr~~~~~ 151 (218)
. ..|.+.+.-++++..+.|..+++.|+++|.++-+ -| .-.++++|.+++.+
T Consensus 249 ~--~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~ 316 (394)
T PRK09028 249 A--MRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGD 316 (394)
T ss_pred H--HcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC
Confidence 4 4677889999999999999999999999998554 33 12569999997433
No 102
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=97.22 E-value=0.0037 Score=56.02 Aligned_cols=100 Identities=19% Similarity=0.222 Sum_probs=66.8
Q ss_pred CCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|.+..+++||+.+|-+ .|+++++++... +.+. ++.... +. ....+..|+
T Consensus 197 gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~-~~~~----~~~~~~------------------g~----~~s~~~a~l 249 (388)
T PRK07811 197 GADVVVHSTTKYIGGHSDVVGGALVTNDEELD-EAFA----FLQNGA------------------GA----VPGPFDAYL 249 (388)
T ss_pred CCcEEEecCceeecCCCCcEEEEEEECCHHHH-HHHH----HHHHhc------------------CC----CCCHHHHHH
Confidence 689999999999998865 588887766532 2221 111100 00 012334555
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CC----------------CceeEEEEecC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-PR----------------KCALVCFRLKP 149 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~~----------------~~~iV~Fr~~~ 149 (218)
.++ |.+.+..++++..+.++.+++.|+++|+++-+. |. -.++++|.+++
T Consensus 250 ~~~--~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 315 (388)
T PRK07811 250 TLR--GLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAG 315 (388)
T ss_pred HHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCC
Confidence 543 445688889988999999999999999986553 31 24699999975
No 103
>PLN02822 serine palmitoyltransferase
Probab=97.21 E-value=0.0089 Score=55.14 Aligned_cols=95 Identities=7% Similarity=-0.021 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-C----c-----chHHHhh-c--eeecceEE---C---
Q 041549 109 MYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-R----E-----SDGSELN-Q--LSLTQATL---G--- 169 (218)
Q Consensus 109 ~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~----~-----~~~~~Ln-~--~~vs~~~~---~--- 169 (218)
.++.++..++.++|.+.|++.+++++..++.++++.+++.+. + + +.++.|- + +++++..+ +
T Consensus 367 ~~~~~~l~~~~~~l~~~L~~~~g~~~~~~~~spi~~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~ 446 (481)
T PLN02822 367 PSVLAKLKENIALLHKGLSDIPGLSIGSNTLSPIVFLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCR 446 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCEEEEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCC
Confidence 445566668999999999998899988778888998888642 1 1 1133432 3 44543221 1
Q ss_pred CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 170 GVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 170 g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
++..+|++++ ...+++||+++++.|++....++.
T Consensus 447 ~~~~lRi~is-~~~t~edI~~~~~~l~~~~~~~~~ 480 (481)
T PLN02822 447 LPVGIRLFVS-AGHTESDILKASESLKRVAASVLK 480 (481)
T ss_pred CCCcEEEEEC-CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 2346999984 678999999999999998877653
No 104
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=97.21 E-value=0.0036 Score=56.29 Aligned_cols=102 Identities=20% Similarity=0.293 Sum_probs=65.1
Q ss_pred CCCeeeecccccCCCcc-ceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHH
Q 041549 21 LADSVSLNPHKWFLTNM-DCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTV 99 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~-~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~ 99 (218)
++|.++.++|||+.++- ..|.+++.++..+...+. .|+... + -....+..|+.
T Consensus 201 gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~---~~~~~~----------------------g-~~~s~~~A~~~ 254 (398)
T PRK07504 201 GAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQ---DYFRHT----------------------G-PSLSPFNAWTL 254 (398)
T ss_pred CCCEEEeeccccccCCccceEEEEEeCcHHHHHHHH---HHHHHh----------------------C-CCCCHHHHHHH
Confidence 58999999999998863 344344444433322111 111110 0 01234455655
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cC-----CC-----------ceeEEEEecCC
Q 041549 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-EP-----RK-----------CALVCFRLKPK 150 (218)
Q Consensus 100 l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~~-----~~-----------~~iV~Fr~~~~ 150 (218)
+ .|.+.+..++++..++++++++.|+++|+++-+ .| |. .++++|.+++.
T Consensus 255 l--~~L~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~ 320 (398)
T PRK07504 255 L--KGLETLPVRVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGG 320 (398)
T ss_pred H--hccchHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCC
Confidence 4 467778999999999999999999999988643 23 21 57999999753
No 105
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=97.17 E-value=0.0031 Score=56.62 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=65.8
Q ss_pred CCCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHH
Q 041549 20 ELADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLW 97 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w 97 (218)
.++|.+..+++|++.+|-+ .|++ +.++... +.+.. ..... . .++ ....+..|
T Consensus 194 ~g~Divv~S~sK~lgg~g~~~gG~v-~~~~~li-~~l~~----~~~~~--------------~-----~g~-~l~~~~a~ 247 (391)
T TIGR01328 194 LGVDVVVHSATKYIGGHGDVVAGLI-CGKAELL-QQIRM----VGIKD--------------M-----TGS-VISPFDAW 247 (391)
T ss_pred cCCCEEEccccccccCCCCceEEEE-EcCHHHH-HHHHH----HHHHh--------------C-----CCC-CCCcHHHH
Confidence 4789999999999998865 3554 4454433 22211 00000 0 011 11334556
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C----------------CCceeEEEEecC
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P----------------RKCALVCFRLKP 149 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~----------------~~~~iV~Fr~~~ 149 (218)
+.++ |.+.+..++++..+.++++++.|+++|+++.+. | .-.++++|.+++
T Consensus 248 l~l~--~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~ 314 (391)
T TIGR01328 248 LILR--GLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKG 314 (391)
T ss_pred HHHh--CcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCC
Confidence 6654 566778889999999999999999999986553 2 124699999975
No 106
>PRK07671 cystathionine beta-lyase; Provisional
Probab=97.16 E-value=0.0034 Score=56.06 Aligned_cols=98 Identities=14% Similarity=0.219 Sum_probs=66.4
Q ss_pred CCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|.+...++||+.+|-+ .|+++++++... +.+..-..+.+ + .......|+
T Consensus 185 g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~-~~~~~~~~~~g-------------~-------------~~~~~~a~l 237 (377)
T PRK07671 185 GADIVLHSATKYLGGHSDVVAGLVVVNSPELA-EDLHFVQNSTG-------------G-------------ILGPQDSWL 237 (377)
T ss_pred CCeEEEecCcccccCCccceeEEEEeCcHHHH-HHHHHHHHhhc-------------C-------------CCCHHHHHH
Confidence 679999999999999864 677777766443 22211001110 0 012355665
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CC----------------CceeEEEEe
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-PR----------------KCALVCFRL 147 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~~----------------~~~iV~Fr~ 147 (218)
.++ |.+.+..++++..+.++.+++.|+++|+++-+. |. -.++++|.+
T Consensus 238 ~~~--~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~ 301 (377)
T PRK07671 238 LLR--GLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV 301 (377)
T ss_pred HHc--CcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEe
Confidence 544 566677899999999999999999999886553 21 246999998
No 107
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=97.16 E-value=0.0022 Score=57.40 Aligned_cols=101 Identities=18% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHH
Q 041549 20 ELADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLW 97 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w 97 (218)
.++|.+..++|||+.+|-+ .|++++.++... +.+.....+++ .. ...+..|
T Consensus 187 ~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~-~~~~~~~~~~g--------------------~~------~~p~~a~ 239 (385)
T PRK08574 187 HGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFL-EELWEWRRRLG--------------------TI------MQPFEAY 239 (385)
T ss_pred hCCcEEEeeCceeecCCCCceeEEEEECcHHHH-HHHHHHHHhcC--------------------CC------CCHHHHH
Confidence 3589999999999999865 466777665432 22211000100 00 1123445
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cC-----C-------------CceeEEEEecC
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-EP-----R-------------KCALVCFRLKP 149 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~~-----~-------------~~~iV~Fr~~~ 149 (218)
+.+ .|.+.+..++++..+.|.++++.|+++|.++-+ .| | -.++++|.+++
T Consensus 240 l~l--~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~ 308 (385)
T PRK08574 240 LVL--RGLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKG 308 (385)
T ss_pred HHH--cccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCC
Confidence 544 466778899999999999999999999988644 33 1 24589999974
No 108
>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.
Probab=97.12 E-value=0.005 Score=55.82 Aligned_cols=160 Identities=19% Similarity=0.082 Sum_probs=81.8
Q ss_pred CCCCCCeeeecccccCCCcc-----ceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccC----C
Q 041549 18 GVELADSVSLNPHKWFLTNM-----DCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIAL----S 88 (218)
Q Consensus 18 gi~~aDSi~~d~HK~l~~P~-----~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~----s 88 (218)
|-=+||-+ ++-||-++.|. ++|++-+|+.- .+.+.. ..++... +.. |...+ ..+++. -
T Consensus 245 ge~GADI~-vg~~Q~fg~p~~~GGP~~G~~a~~~~l--~r~lPG--RiVG~t~-D~~------G~~~~-~ltLqtREQHI 311 (429)
T PF02347_consen 245 GEYGADIV-VGEHQTFGIPMGFGGPGAGFFAVREDL--VRQLPG--RIVGQTK-DAD------GKRAF-VLTLQTREQHI 311 (429)
T ss_dssp GGGT-SEE-EECCTTTT---CCC-S--EEEEE-GGG--GGGS-S---EEEEEE-BCC------CSCCE-EEE-GGGTCHH
T ss_pred hhcCccEE-eeCCCCCcccCCCCCCCeeeEEEhhhh--hhhCCC--ceecccc-ccc------cccee-eeccccccccc
Confidence 44468887 88899999887 46778888872 344332 3443221 101 11111 112221 1
Q ss_pred CCCc------------hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHH
Q 041549 89 RRFK------------ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGS 156 (218)
Q Consensus 89 R~~~------------al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~ 156 (218)
||-+ |+..++-+..+|.+|+++.-+.++..|.|+++.|++..++.+-.++-.-.|.....+ ...+
T Consensus 312 rReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~~f~e~v~~~~~~---~~~~ 388 (429)
T PF02347_consen 312 RREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFDNPFFFEFVVVFSKD---KEVE 388 (429)
T ss_dssp HGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSSSBSSEEEEESS----HHHH
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCceeeeeecCCc---HHHH
Confidence 2211 345556678999999999999999999999999999733433332222233333322 2333
Q ss_pred Hhhc-ee---ecceEECCEEEEEEecCCCCCcHHHHHHHHHHH
Q 041549 157 ELNQ-LS---LTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLI 195 (218)
Q Consensus 157 ~Ln~-~~---vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l 195 (218)
+|.+ .. +.....+.. .+=+|+. ..++++|||.+++.+
T Consensus 389 ~l~~~~~~~gl~~~~~~~~-~~li~~T-E~~t~edid~lv~~f 429 (429)
T PF02347_consen 389 ELLKRGIEGGLNLRYPDDG-ALLICVT-ETRTKEDIDRLVEAF 429 (429)
T ss_dssp HHHHTT----EEEGGG-SS-EEEEE---TT--HHHHHHHHH--
T ss_pred HHHHHHHhcCCCccccCCC-eEEEEcc-CCCCHHHHHHHHhcC
Confidence 3433 11 111111222 6778986 799999999999864
No 109
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=97.11 E-value=0.0082 Score=54.17 Aligned_cols=100 Identities=17% Similarity=0.179 Sum_probs=68.7
Q ss_pred CCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
+||-+..++||++++|-+ .|+++++++... +.+.. .... ..+. ...+..|+
T Consensus 196 gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l~-~~l~~----~~~~----------------~g~~------~s~~~a~l 248 (405)
T PRK08776 196 GADLVLHSTTKYINGHSDVVGGAVVARDAELH-QQLVW----WANA----------------LGLT------GSPFDAFL 248 (405)
T ss_pred cCCEEEecCceeecCCCCceEEEEEeCCHHHH-HHHHH----HHHh----------------cCCC------CCHHHHHH
Confidence 689999999999999865 677777666432 22211 0000 0011 13556666
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C----------------CCceeEEEEecC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P----------------RKCALVCFRLKP 149 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~----------------~~~~iV~Fr~~~ 149 (218)
.+ .|.+.+..++++..+.+..+++.|+++|.++-+. | .-.++++|.+++
T Consensus 249 ~~--~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~ 314 (405)
T PRK08776 249 TL--RGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEG 314 (405)
T ss_pred HH--hhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcC
Confidence 54 5778889999999999999999999999886442 2 124699999975
No 110
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=97.10 E-value=0.0053 Score=54.28 Aligned_cols=151 Identities=11% Similarity=-0.005 Sum_probs=83.3
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCC-cccccccCCCCCCCCCCCCccCCcCccccCCCCCc-hhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTK-SDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK-ALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~-al~~w~ 98 (218)
.+|.++.++||++.++ ..|+++.+. ... +.+... .+|.. .++-... +..+..
T Consensus 234 ~~~i~~~S~sK~~~g~-r~G~v~~~~-~~~-~~l~~~~~~~~~-----------------------~~~~~~~~~~a~~~ 287 (397)
T PRK06939 234 RVDIITGTLGKALGGA-SGGYTAGRK-EVI-DWLRQRSRPYLF-----------------------SNSLAPAIVAASIK 287 (397)
T ss_pred CCcEEEEECHHHhCcc-CceEEEeCH-HHH-HHHHHhCccccc-----------------------cCCCCHHHHHHHHH
Confidence 5788999999999766 457777653 333 333211 11111 0110001 122223
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-Cc-chHHHhhc--eeecceEE----CC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-RE-SDGSELNQ--LSLTQATL----GG 170 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~~-~~~~~Ln~--~~vs~~~~----~g 170 (218)
+++.+-. ..++.++..++.+++.+.|++. ++++.. +..+++.+...+. +. +....|.+ +.+++... .+
T Consensus 288 al~~~~~--~~~~~~~~~~~~~~l~~~L~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~ 363 (397)
T PRK06939 288 VLELLEE--SDELRDRLWENARYFREGMTAA-GFTLGP-GEHPIIPVMLGDAKLAQEFADRLLEEGVYVIGFSFPVVPKG 363 (397)
T ss_pred HHHHHhc--CHHHHHHHHHHHHHHHHHHHHc-CCCcCC-CCCCEEEEEECCHHHHHHHHHHHHHCCceEeeeCCCCCCCC
Confidence 3443321 2344455568889999999886 676543 4556655554321 11 22333333 33332211 23
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
..++|++++ ...++++|+++++.|.++.++.
T Consensus 364 ~~~iRi~~~-~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 364 QARIRTQMS-AAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred CceEEEEEC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 468999985 5678999999999998876553
No 111
>PRK07050 cystathionine beta-lyase; Provisional
Probab=97.00 E-value=0.0079 Score=54.05 Aligned_cols=148 Identities=14% Similarity=0.065 Sum_probs=89.1
Q ss_pred CCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|.+..+.+||+.+.-+ .|++++.++... +.+...-.+++ . ...+...|+
T Consensus 201 GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~-~~~~~~~~~~G----------------------~----~~~~~~a~l 253 (394)
T PRK07050 201 GVDISVQALTKYQSGGSDVLMGATITADAELH-AKLKLARMRLG----------------------I----GVSADDCSL 253 (394)
T ss_pred CCeEEEEECCceecCCCCeeEEEEEECCHHHH-HHHHHHHHhcC----------------------C----CCCHHHHHH
Confidence 479999999999987765 577777766432 22211000111 0 012344565
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C----------------CCceeEEEEecCC-CcchH----H
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P----------------RKCALVCFRLKPK-RESDG----S 156 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~----------------~~~~iV~Fr~~~~-~~~~~----~ 156 (218)
.+ .|.+.+..++++..+.|.++++.|+++|.++.+. | .-.++++|...+. +.+.. +
T Consensus 254 ~l--r~l~tl~~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~ 331 (394)
T PRK07050 254 VL--RGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVE 331 (394)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHH
Confidence 54 3677788899999999999999999999886553 2 1246889998753 22222 2
Q ss_pred Hhhc-----------eeecce-----EE----CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 157 ELNQ-----------LSLTQA-----TL----GGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 157 ~Ln~-----------~~vs~~-----~~----~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
.|+. -.+.+. .. -....+|+|++- ||+|.+++.|.+.....
T Consensus 332 ~l~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGl-----E~~~dl~~dl~~al~~~ 392 (394)
T PRK07050 332 ALELFAIGWSWGGACSLAMPYDVASMRTAKWPHRGTLVRLYIGL-----EDEADLIADLEQALEAA 392 (394)
T ss_pred cCCCCeeccccCCccceEeeCcccccchhhcCCCCCEEEEEeCc-----CCHHHHHHHHHHHHHHh
Confidence 2222 011110 00 012579999974 46666777777665544
No 112
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=96.98 E-value=0.0084 Score=53.97 Aligned_cols=101 Identities=17% Similarity=0.237 Sum_probs=64.9
Q ss_pred CCCCeeeecccccCCCccc-eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 20 ELADSVSLNPHKWFLTNMD-CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~-~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
.++|.+..+++|++.++-+ .|.+++.++... +.+.. + .... .. ....+..|+
T Consensus 199 ~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l~-~~l~~---~-~~~~----------------g~------~~s~~~a~l 251 (398)
T PRK08249 199 LGADLVIHSATKFLSGHADALGGVVCGSKELM-EQVYH---Y-REIN----------------GA------TMDPMSAYL 251 (398)
T ss_pred hCCCEEeccCceecCCCCCceEEEEECCHHHH-HHHHH---H-HHhc----------------CC------CCCHHHHHH
Confidence 3689999999999998753 233444444332 22211 0 0000 00 012345565
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C-----C-----------CceeEEEEecC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P-----R-----------KCALVCFRLKP 149 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~-----~-----------~~~iV~Fr~~~ 149 (218)
.+ .|.+.+..++++..+.++.+++.|+++|.++-+. | | -.++++|.+++
T Consensus 252 ~l--~~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~ 317 (398)
T PRK08249 252 IL--RGMKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKG 317 (398)
T ss_pred HH--hCcchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcC
Confidence 54 3777888999999999999999999999886553 3 1 25699999975
No 113
>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]
Probab=96.98 E-value=0.028 Score=48.77 Aligned_cols=174 Identities=13% Similarity=0.102 Sum_probs=104.1
Q ss_pred CCCeeeecccccCCC-ccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCc-------
Q 041549 21 LADSVSLNPHKWFLT-NMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK------- 92 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~-P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~------- 92 (218)
++|+.+|=..|++.+ |-|.|.+++.++.. ++. .+..+++.+-+...|+.-....++ ++|.-.|+
T Consensus 266 gVDFACWCSYKYlnaGaGgIgGlFvHekh~-~~~---~prl~GWwgh~~s~RF~Mdnvl~l----ipGa~GfRiSNPpi~ 337 (465)
T KOG3846|consen 266 GVDFACWCSYKYLNAGAGGIGGLFVHEKHT-KES---LPRLAGWWGHDPSKRFQMDNVLEL----IPGALGFRISNPPII 337 (465)
T ss_pred CCceEEEeeecccccCCCccceeeeehhhh-cch---hhHHhhhccCCcchhhhhcccccc----CccccccccCCCcHh
Confidence 579999999999986 55678888866643 322 233333322221112221111111 34443343
Q ss_pred -hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------eEEecCC----CceeEEEEecCCCcchHH
Q 041549 93 -ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDER-----------FETVEPR----KCALVCFRLKPKRESDGS 156 (218)
Q Consensus 93 -al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~-----------~el~~~~----~~~iV~Fr~~~~~~~~~~ 156 (218)
..++-.+|..+-.-.+.+.-.+++-++.|+...|+..-+ +.+++|. +....+..+..+.+....
T Consensus 338 ~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp~~~vfq 417 (465)
T KOG3846|consen 338 DVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSSPTPKVFQ 417 (465)
T ss_pred HHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCCCchHHHH
Confidence 234455666666666777777889999999888876432 3344431 333344333333333345
Q ss_pred Hhhc-eeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 157 ELNQ-LSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 157 ~Ln~-~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
.|.+ +.+.. -+.+.+||+++..-|++-.|+-.+++.|.++.+.+.+
T Consensus 418 eL~krGv~~D--kR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d~~es 464 (465)
T KOG3846|consen 418 ELHKRGVIGD--KRRPNVIRVAPVPLYNTFSDVYIFVNALNEAMDKLES 464 (465)
T ss_pred HHHHcCeecc--ccCCCceEeecchhhccHHHHHHHHHHHHHHHHHhhc
Confidence 5555 33322 1346789999998899999999999999998876643
No 114
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.98 E-value=0.01 Score=54.17 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=42.7
Q ss_pred hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C-----C------------CceeEEEEecCC
Q 041549 94 LKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P-----R------------KCALVCFRLKPK 150 (218)
Q Consensus 94 l~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~-----~------------~~~iV~Fr~~~~ 150 (218)
...|+ ...|.+.+..++++..+.|.++++.|+++|.++-+. | | -.++++|.+++.
T Consensus 284 ~~a~l--~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~ 356 (436)
T PRK07812 284 FNAFL--IAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGG 356 (436)
T ss_pred HHHHH--HhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecCC
Confidence 34443 356889999999999999999999999999985543 3 0 246999999753
No 115
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=96.91 E-value=0.024 Score=52.05 Aligned_cols=155 Identities=15% Similarity=0.179 Sum_probs=83.5
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHH
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTV 99 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~ 99 (218)
+.+|++++.+||++++|.| |++.+++..... .+... ..... + +..|+-...+.-.|+.. +
T Consensus 249 s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~-~~~~~-~~~~~------------g---~~t~~g~~~~~~~Ala~--~ 308 (460)
T PRK13238 249 SYADGLTMSAKKDAMVNIG-GLLCFRDEDLFT-ECRTL-CILYE------------G---FPTYGGLAGRDMEALAV--G 308 (460)
T ss_pred ccCcEEEEecccCCCCcce-eEEEcChHHHHH-Hhhhc-ccccC------------C---cccccCcHHHHHHHHHh--h
Confidence 4699999999999999997 999998855442 22111 00000 0 00111100110122222 2
Q ss_pred HHH-hcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC----------CcchHHHhh-c-------
Q 041549 100 IRK-HGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK----------RESDGSELN-Q------- 160 (218)
Q Consensus 100 l~~-~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~----------~~~~~~~Ln-~------- 160 (218)
|+. ...+-++.++ +..++|.+.|++. |+.++.|.....|....... +.+.+..|- +
T Consensus 309 l~e~~~~~~~~~~~----~~~~~l~~~L~~~-G~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~ 383 (460)
T PRK13238 309 LYEGMDEDYLAYRI----GQVEYLGEGLEEA-GVPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVE 383 (460)
T ss_pred HHHhhChHHHHHHH----HHHHHHHHHHHHC-CCCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeec
Confidence 222 2333344444 4578999999886 99999765444443333211 111122332 2
Q ss_pred --eeecce-EECC------EEEEEEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 161 --LSLTQA-TLGG------VYVIRCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 161 --~~vs~~-~~~g------~~~lR~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
.|.... ...| ...+|+++.----|.+++|.+.+.|.++.
T Consensus 384 ~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~ 431 (460)
T PRK13238 384 IGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVK 431 (460)
T ss_pred ccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHH
Confidence 111111 1112 46899998543348999999999998886
No 116
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=96.89 E-value=0.022 Score=51.05 Aligned_cols=100 Identities=11% Similarity=0.098 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeE----------EecCCCceeEEEEecCCCc-----------chHHHh-hce-eecc
Q 041549 109 MYHIRSDVNMAKRFEAMVAKDERFE----------TVEPRKCALVCFRLKPKRE-----------SDGSEL-NQL-SLTQ 165 (218)
Q Consensus 109 ~~~i~~~~~la~~l~~~L~~~~~~e----------l~~~~~~~iV~Fr~~~~~~-----------~~~~~L-n~~-~vs~ 165 (218)
.+++++..+++++|.+.|++. ++. +...+..+|+.+.+.+... +..+.+ ++. ++..
T Consensus 261 ~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~rg~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~ 339 (392)
T PLN03227 261 PQLLNRLHDSIANLYSTLTNS-SHPYALKLRNRLVITSDPISPIIYLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVS 339 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCccccccccccccCCCCCCCEEEEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEe
Confidence 345666678999999999852 332 2223467788888754210 111222 222 2211
Q ss_pred e--------EECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 041549 166 A--------TLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLLQEPEN 210 (218)
Q Consensus 166 ~--------~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~~~~~~ 210 (218)
. ..-.+..||+++ +...|++|||++++.|++...++.-+.-.+|
T Consensus 340 ~~~~~~~~~~~~P~~~iR~~~-~~~~t~eei~~~~~~l~~~~~~~~~~~~~~~ 391 (392)
T PLN03227 340 TGGHVKKFLQLVPPPCLRVVA-NASHTREDIDKLLTVLGEAVEAILCKIIDEN 391 (392)
T ss_pred cccccCCcCCCCCCceEEEEe-cCCCCHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 1 011246799998 5799999999999999999988864444444
No 117
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.88 E-value=0.016 Score=52.78 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=42.9
Q ss_pred hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C-----C------------CceeEEEEecCC
Q 041549 93 ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P-----R------------KCALVCFRLKPK 150 (218)
Q Consensus 93 al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~-----~------------~~~iV~Fr~~~~ 150 (218)
....|+ ...|.+.+..++++..+.|.++++.|+++|+++-+. | | -.++++|.+++.
T Consensus 279 p~~a~l--~~rgl~tl~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~ 352 (431)
T PRK08248 279 PFNSFL--LLQGLETLHLRMERHSENALAVAKFLEEHEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGG 352 (431)
T ss_pred HHHHHH--HhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCC
Confidence 344553 356888899999999999999999999999986543 3 0 146999999753
No 118
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.88 E-value=0.023 Score=51.80 Aligned_cols=54 Identities=20% Similarity=0.393 Sum_probs=41.7
Q ss_pred hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C-----C------------CceeEEEEecC
Q 041549 94 LKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P-----R------------KCALVCFRLKP 149 (218)
Q Consensus 94 l~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~-----~------------~~~iV~Fr~~~ 149 (218)
...|+. ..|.+.+..++++..+.|.++++.|+++|.++-+. | | -.++++|.+++
T Consensus 280 ~~A~l~--~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~ 351 (433)
T PRK08134 280 MNAWQL--LQGIETLPLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKG 351 (433)
T ss_pred HHHHHH--hcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecC
Confidence 444433 46788899999999999999999999999875543 2 1 24689999975
No 119
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.87 E-value=0.02 Score=51.98 Aligned_cols=55 Identities=11% Similarity=0.240 Sum_probs=42.7
Q ss_pred hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C---------------CC--ceeEEEEecCC
Q 041549 94 LKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P---------------RK--CALVCFRLKPK 150 (218)
Q Consensus 94 l~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~---------------~~--~~iV~Fr~~~~ 150 (218)
+..|+. ..|.+.+..++++..+.|.++++.|+++|.++-+. | +. .++++|.+++.
T Consensus 275 ~~a~l~--lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~~ 347 (425)
T PRK06084 275 FNAFLI--LQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKGG 347 (425)
T ss_pred HHHHHH--HcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecCC
Confidence 445543 45888999999999999999999999999986543 3 12 46999999753
No 120
>PRK06460 hypothetical protein; Provisional
Probab=96.86 E-value=0.013 Score=52.25 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=63.6
Q ss_pred CCCeeeecccccCCCcc--ceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNM--DCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~--~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|.+...+|||+.++- -.|++. .++... +.+.....+ ++.. ..+...|+
T Consensus 181 ~~divv~S~sK~l~G~~~~~~G~~~-~~~~l~-~~l~~~~~~----------------------~g~~----~~~~~a~~ 232 (376)
T PRK06460 181 GADIVVHSASKFLAGHNDVIAGLAA-GYGKLL-NVIDQMRRT----------------------LGTS----LDPHAAYL 232 (376)
T ss_pred CCCEEEeecceeccCCCCceEEEEe-cCHHHH-HHHHHHHHh----------------------cCCC----CCHHHHHH
Confidence 58999999999987553 256554 344332 232110000 0110 01234565
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C----------------CCceeEEEEecC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P----------------RKCALVCFRLKP 149 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~----------------~~~~iV~Fr~~~ 149 (218)
.++ |.+.+..++++..+.++++++.|+++|.++-+. | .-.++++|.+.+
T Consensus 233 ~l~--~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~ 298 (376)
T PRK06460 233 TLR--GIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNG 298 (376)
T ss_pred HHh--chhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 544 678889999999999999999999999875443 3 135799999975
No 121
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=96.85 E-value=0.033 Score=49.38 Aligned_cols=166 Identities=13% Similarity=0.156 Sum_probs=98.2
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCc-cccCCCCCchh-HH
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDW-QIALSRRFKAL-KL 96 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~-tl~~sR~~~al-~~ 96 (218)
.|.||-+|...||-|-+|.| |++++|..-.-... ...-+.+.+.+ ...|+.-+ ++||+=....+ .+
T Consensus 240 Fey~DiVTTTTHKsLRGPRg-~mIFyRkGvk~~~~-k~g~~i~ydlE----------~kINfaVFP~lQGGPHNhtIaal 307 (477)
T KOG2467|consen 240 FEYCDIVTTTTHKSLRGPRG-AMIFYRKGVKSIKP-KQGKEILYDLE----------DKINFAVFPGLQGGPHNHTIAAL 307 (477)
T ss_pred ccccceeeccccccccCCcc-eeEEEeccCCcCCC-CCCCcceechh----------hhhhhhccccccCCCCcchHHHH
Confidence 68999999999999999998 66666664221111 11111122211 12333333 46666554443 34
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceeEEEEecCC--CcchHH--------Hhhceeec-
Q 041549 97 WTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP-RKCALVCFRLKPK--RESDGS--------ELNQLSLT- 164 (218)
Q Consensus 97 w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-~~~~iV~Fr~~~~--~~~~~~--------~Ln~~~vs- 164 (218)
-.+|+.-....+.+..++....++.|++.|.+. |++|++. .+-.+|..-+++. +-..+. .+|+.-+.
T Consensus 308 AvALkQa~tpefk~Yq~qV~~Nakala~~l~~~-Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpG 386 (477)
T KOG2467|consen 308 AVALKQAMTPEFKEYQKQVLKNAKALASALISR-GYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPG 386 (477)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHc-CceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCC
Confidence 457888888888888888899999999999997 9999974 3455555555544 322222 13441110
Q ss_pred ceEECCEEEEEEecCCC-----CCcHHHHHHHHHHHHHHH
Q 041549 165 QATLGGVYVIRCSIGTT-----LTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 165 ~~~~~g~~~lR~~~~n~-----~tt~~di~~l~~~l~~~~ 199 (218)
....--+.-||+- .| -..++|++++.+.|.+.+
T Consensus 387 D~Sal~PgGiRiG--tPAmTsRG~~e~df~~v~~fi~~av 424 (477)
T KOG2467|consen 387 DKSALSPGGIRIG--TPAMTSRGFGEEDFEKVADFIDRAV 424 (477)
T ss_pred CccccCCCceecc--chhhcccCccHHHHHHHHHHHHHHH
Confidence 0000012237753 24 334788888888886654
No 122
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=96.79 E-value=0.015 Score=50.74 Aligned_cols=85 Identities=13% Similarity=0.141 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceE-ECC-EEEEEEecCCCC
Q 041549 107 GLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQAT-LGG-VYVIRCSIGTTL 182 (218)
Q Consensus 107 g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~-~~g-~~~lR~~~~n~~ 182 (218)
.+.+..++..++.+++.+.|++++++++. ++..+.+.|.+.+...+..+.|.+ +++.+.. ..+ ..++|++++
T Consensus 258 ~~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~g~~~~~~~~~~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~--- 333 (346)
T TIGR01141 258 FIEKTVEEINAERERLYDGLKKLPGLEVY-PSDANFVLIRFPRDADALFEALLEKGIIVRDLNSYPGLPNCLRITVG--- 333 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEC-CCcCCEEEEecCCCHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC---
Confidence 46666677778899999999998898854 456678888876411223344544 3333321 111 468999964
Q ss_pred CcHHHHHHHHHHHH
Q 041549 183 TQDRHIDDLRKLIQ 196 (218)
Q Consensus 183 tt~~di~~l~~~l~ 196 (218)
+++|++++++.|+
T Consensus 334 -~~~~i~~~~~~l~ 346 (346)
T TIGR01141 334 -TREENDRFLAALR 346 (346)
T ss_pred -CHHHHHHHHHHhC
Confidence 6889999998763
No 123
>PRK09064 5-aminolevulinate synthase; Validated
Probab=96.79 E-value=0.013 Score=52.37 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=65.4
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-Cc-chHHHh-hc--eeecceE---
Q 041549 96 LWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-RE-SDGSEL-NQ--LSLTQAT--- 167 (218)
Q Consensus 96 ~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~~-~~~~~L-n~--~~vs~~~--- 167 (218)
...+++.+-..+ ...++..++++++.+.|++. +++++. +..+++.|..... .. +..+.| .+ .++.+..
T Consensus 288 a~~al~~~~~~~--~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~iv~i~~~~~~~~~~l~~~L~~~~gi~v~~~~~p~ 363 (407)
T PRK09064 288 ALASIRHLKESN--EERERHQERAAKLKAALDAA-GIPVMP-NESHIVPVMVGDPEKCKKASDMLLEEHGIYVQPINYPT 363 (407)
T ss_pred HHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeECCCC
Confidence 334455443332 23455668999999999985 787664 4577888876431 11 223444 23 3333211
Q ss_pred -ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 168 -LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 168 -~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
-.|...+|++++ .+++++|++++++.|+++..++
T Consensus 364 ~~~~~~~lRis~~-~~~t~edi~~l~~~l~~~~~~~ 398 (407)
T PRK09064 364 VPRGTERLRITPT-PFHTDEMIDHLVEALVEVWARL 398 (407)
T ss_pred CCCCCceEEEEeC-CCCCHHHHHHHHHHHHHHHHHc
Confidence 124467999985 7999999999999999987654
No 124
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=96.79 E-value=0.01 Score=53.15 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=64.7
Q ss_pred CCCeeeecccccCCCccc-e-eEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMD-C-GCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~-~-g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|.+..++|||+.++-. . |++..+ +... ..+. .++.... . ....+..|+
T Consensus 197 g~Divv~S~sK~~~g~g~~~GG~vv~~-~~~~-~~~~---~~~~~~g-----------------~------~~~~~~a~~ 248 (390)
T PRK08133 197 GADVVIHSATKYLDGQGRVLGGAVVGS-KELM-EEVF---GFLRTAG-----------------P------TLSPFNAWV 248 (390)
T ss_pred CCcEEEeecceeecCCcceEeEEEEcC-HHHH-HHHH---HHHHHhC-----------------C------CCCHHHHHH
Confidence 579999999999988754 3 455443 3332 2211 1111100 0 112345565
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-----------------CceeEEEEecC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR-----------------KCALVCFRLKP 149 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~-----------------~~~iV~Fr~~~ 149 (218)
.+ .|.+.+..++++..+.+..+++.|+++|+++.+.-| -.++++|.+++
T Consensus 249 ~l--~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 314 (390)
T PRK08133 249 FL--KGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKG 314 (390)
T ss_pred HH--cccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC
Confidence 54 467789999999999999999999999998765321 24699999974
No 125
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=96.77 E-value=0.012 Score=52.55 Aligned_cols=98 Identities=13% Similarity=0.239 Sum_probs=63.4
Q ss_pred CCCeeeecccccCCCcc-ce-eEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNM-DC-GCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~-~~-g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|.+..++|||+.++- .. |++..+ +... +.+.. ++.... -.......|+
T Consensus 190 g~Divv~S~sK~l~g~g~~~gG~vv~~-~~~~-~~l~~---~~~~~g-----------------------~~~~p~~a~~ 241 (380)
T TIGR01325 190 GADVVVYSATKHIDGQGRVMGGVIAGS-EELM-AEVAV---YLRHTG-----------------------PAMSPFNAWV 241 (380)
T ss_pred CCCEEEeeccceecCCCCeEEEEEEeC-HHHH-HHHHH---HHHhhC-----------------------CCCCHHHHHH
Confidence 58999999999999874 33 555544 3332 22211 111100 0012233455
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C-----C-----------CceeEEEEec
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P-----R-----------KCALVCFRLK 148 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~-----~-----------~~~iV~Fr~~ 148 (218)
.+ .|.+.+..++++..+.++++++.|+++|+++-+. | | -.++++|.++
T Consensus 242 ~l--~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~ 306 (380)
T TIGR01325 242 LL--KGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVA 306 (380)
T ss_pred HH--hccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEC
Confidence 43 4778888899999999999999999999886543 2 1 2569999997
No 126
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=96.69 E-value=0.011 Score=52.94 Aligned_cols=89 Identities=16% Similarity=0.193 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-Cc-chHHHh-hc--eeecceE---E-CCEEEEEEecCCC
Q 041549 111 HIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-RE-SDGSEL-NQ--LSLTQAT---L-GGVYVIRCSIGTT 181 (218)
Q Consensus 111 ~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~~-~~~~~L-n~--~~vs~~~---~-~g~~~lR~~~~n~ 181 (218)
..++..+..+++.+.|++. ++++. ++..+++.+..... .. +..+.| .+ +++.+.. + .|..++|++++ .
T Consensus 301 ~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~i~~~~~~~~~~~~~~L~~~~GI~v~~~~~p~~~~~~~~lRis~~-~ 377 (410)
T PRK13392 301 ERDAHQDRVAALKAKLNAN-GIPVM-PSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINYPTVPRGTERLRITPT-P 377 (410)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCCC-CCCCCEEEEEeCCHHHHHHHHHHHHHhCCEEEeeeCCCCCCCCCceEEEEEC-C
Confidence 3355567889999999886 78765 46677776665421 11 233455 33 3443221 1 24468999984 6
Q ss_pred CCcHHHHHHHHHHHHHHHHHH
Q 041549 182 LTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 182 ~tt~~di~~l~~~l~~~~~~~ 202 (218)
..|++|++++++.|+++.+++
T Consensus 378 ~~t~edid~l~~aL~~~~~~~ 398 (410)
T PRK13392 378 LHDDEDIDALVAALVAIWDRL 398 (410)
T ss_pred CCCHHHHHHHHHHHHHHHHHc
Confidence 889999999999999886554
No 127
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=96.69 E-value=0.013 Score=50.90 Aligned_cols=85 Identities=15% Similarity=0.197 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-Cc-chHHHhhc--eeecceE----ECCEEEEEEecCC
Q 041549 109 MYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-RE-SDGSELNQ--LSLTQAT----LGGVYVIRCSIGT 180 (218)
Q Consensus 109 ~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~~-~~~~~Ln~--~~vs~~~----~~g~~~lR~~~~n 180 (218)
.++.++..++.+++.+.|++. ++++. ++..+++.+.+.+. +. +..+.|.+ +++.+.. ..+..++|++++
T Consensus 268 ~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~iRis~~- 344 (360)
T TIGR00858 268 PWRREKLLALIARLRAGLEAL-GFTLM-PSCTPIVPVIIGDNASALALAEELQQQGIFVGAIRPPTVPAGTSRLRLTLS- 344 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CCccC-CCCCCEEEEEeCCHHHHHHHHHHHHHCCeeEeeeCCCCCCCCCceEEEEEc-
Confidence 445666678999999999986 67765 45677887877532 11 22344433 3443211 123458999995
Q ss_pred CCCcHHHHHHHHHHHH
Q 041549 181 TLTQDRHIDDLRKLIQ 196 (218)
Q Consensus 181 ~~tt~~di~~l~~~l~ 196 (218)
.+++++|++++++.|+
T Consensus 345 ~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 345 AAHTPGDIDRLAEALK 360 (360)
T ss_pred CCCCHHHHHHHHHhhC
Confidence 6889999999998763
No 128
>KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism]
Probab=96.66 E-value=0.003 Score=57.68 Aligned_cols=105 Identities=21% Similarity=0.211 Sum_probs=75.7
Q ss_pred cccCccccccc-cCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCcc
Q 041549 6 ACICPEFRHYL-NGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQ 84 (218)
Q Consensus 6 ~~~~~~~r~~~-~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~t 84 (218)
++.|.+--..+ .=.+..||++++.--||++|-.--+++-|.-.- |-.. .+ +-.
T Consensus 335 ALt~aepnnil~HV~eqldSMal~ialWLGiPSaPiV~LHRPleg----------~aaS-------------af---esd 388 (838)
T KOG0630|consen 335 ALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAPIVLLHRPLEG----------SAAS-------------AF---ESD 388 (838)
T ss_pred heeecCcccchhHHHHHHhhccchhHHHhCCCCCceEEeeccccc----------ccch-------------hc---ccC
Confidence 34465432222 225889999999999999997655555443321 1000 00 001
Q ss_pred ccCCCCCchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec
Q 041549 85 IALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE 136 (218)
Q Consensus 85 l~~sR~~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~ 136 (218)
.-.+|+.++|++|.+++++|.+.+..+|++.+.++..+-+.+..+++++++.
T Consensus 389 pi~rekLdaLp~Wta~q~LggKaIadmienAFll~kilfe~aSa~~eiemig 440 (838)
T KOG0630|consen 389 PILREKLDALPLWTALQALGGKAIADMIENAFLLCKILFEGASACEEIEMIG 440 (838)
T ss_pred hHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhcCCceeEec
Confidence 2245677899999999999999999999999999999999999999999985
No 129
>PLN02483 serine palmitoyltransferase
Probab=96.64 E-value=0.039 Score=51.07 Aligned_cols=95 Identities=13% Similarity=0.059 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCC--cchHHHh-hc-eeecceEE----CCEEEEEEecC
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKR--ESDGSEL-NQ-LSLTQATL----GGVYVIRCSIG 179 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~--~~~~~~L-n~-~~vs~~~~----~g~~~lR~~~~ 179 (218)
..+++++..+..++|.+.|+++ ++++..+...+++.+...... .+....| ++ +.+.+... .+...+|++++
T Consensus 367 ~~~~~~~l~~~~~~l~~~L~~~-G~~v~~~~~sp~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~is 445 (489)
T PLN02483 367 GAQKLAQIRENSNFFRSELQKM-GFEVLGDNDSPVMPIMLYNPAKIPAFSRECLKQNVAVVVVGFPATPLLLARARICIS 445 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCCCEEEEEECCHHHHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeC
Confidence 4455667778999999999997 888776555666666543211 1122333 33 33332211 12357999985
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 180 TTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 180 n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
...+++||+++++.|+++.+.+.-
T Consensus 446 -a~~t~edId~~l~~L~~~~~~~~~ 469 (489)
T PLN02483 446 -ASHSREDLIKALEVISEVGDLVGI 469 (489)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHhCc
Confidence 578899999999999999876643
No 130
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=96.64 E-value=0.047 Score=48.64 Aligned_cols=147 Identities=13% Similarity=0.079 Sum_probs=84.1
Q ss_pred CCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHHHH
Q 041549 22 ADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIR 101 (218)
Q Consensus 22 aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~l~ 101 (218)
.|-+++ -|++...+..|+++.+++ . .+.+... ... ..|+. -+........+|+
T Consensus 245 pDi~t~--sK~l~~G~~ig~~~~~~~-~-~~~~~~~----~~~----------------~t~~~---~~~~~aaa~a~l~ 297 (398)
T PRK03244 245 PDVVTL--AKGLGGGLPIGACLAFGP-A-ADLLTPG----LHG----------------STFGG---NPVACAAALAVLD 297 (398)
T ss_pred CCEEEE--chhhhCCcccEEEEEcHH-H-HhhccCC----CCc----------------CCCCC---CHHHHHHHHHHHH
Confidence 566655 699998888999998765 2 2333210 000 01110 0112223334455
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceeEEEEecCCCc-chHHHhh-ce-eecceEECCEEEEEE
Q 041549 102 KHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKCALVCFRLKPKRE-SDGSELN-QL-SLTQATLGGVYVIRC 176 (218)
Q Consensus 102 ~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~~iV~Fr~~~~~~-~~~~~Ln-~~-~vs~~~~~g~~~lR~ 176 (218)
.+..+.+.++++ ++.++|.+.|++. ++.++.. ....++.+.+++... ...+.+. +. ++.+ .+..+||+
T Consensus 298 ~~~~~~~~~~~~---~~~~~l~~~L~~~-~~~~~~~v~g~g~~~~i~~~~~~~~~~~~~l~~~Gv~~~~---~~~~~iR~ 370 (398)
T PRK03244 298 TIASEGLLENAE---RLGEQLRAGIEAL-GHPLVDHVRGRGLLLGIVLTAPVAKAVEAAAREAGFLVNA---VAPDVIRL 370 (398)
T ss_pred HHHhccHHHHHH---HHHHHHHHHHHhc-CCCceeeEeeccEEEEEEEeccHHHHHHHHHHHCCeEEee---cCCCEEEE
Confidence 565555555554 7889999999885 3322221 244566666643211 1223333 33 3432 23468999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 177 SIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 177 ~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
++. ...+++||+++++.|+++..++.
T Consensus 371 ~p~-~~~t~~~i~~~~~~l~~~l~~~~ 396 (398)
T PRK03244 371 APP-LIITDAQVDAFVAALPAILDAAA 396 (398)
T ss_pred ECC-CcCCHHHHHHHHHHHHHHHHhcc
Confidence 994 57889999999999998876643
No 131
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=96.49 E-value=0.042 Score=49.91 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=42.5
Q ss_pred hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C---------------C--CceeEEEEecC
Q 041549 93 ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P---------------R--KCALVCFRLKP 149 (218)
Q Consensus 93 al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~---------------~--~~~iV~Fr~~~ 149 (218)
.+..|+. ..|.+.+..++++..+.|.++++.|+++|.++-+. | + -.++++|.+++
T Consensus 278 ~~~A~l~--~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l~~ 350 (427)
T PRK05994 278 PFNAFLI--LTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKG 350 (427)
T ss_pred HHHHHHH--HcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEecC
Confidence 3455543 56788899999999999999999999999986443 3 1 24699999975
No 132
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=96.47 E-value=0.039 Score=48.95 Aligned_cols=93 Identities=10% Similarity=0.091 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC-----ceeEEEEecCC---Cc-chHHHhhc--e----eecceE--
Q 041549 105 YSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRK-----CALVCFRLKPK---RE-SDGSELNQ--L----SLTQAT-- 167 (218)
Q Consensus 105 ~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~-----~~iV~Fr~~~~---~~-~~~~~Ln~--~----~vs~~~-- 167 (218)
.+.+.+++++..++++++.+.|++.|++++..++. ..+..+++... +. +..+.|.+ + +..+..
T Consensus 254 L~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~l~~~L~~~gI~~~~~~~~~~~~ 333 (380)
T TIGR03588 254 LKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLDQEFGCTRKEVFEALRAAGIGVQVHYIPVHLQ 333 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCcccCCcccccC
Confidence 45578888888999999999999998887654321 12333344321 11 22334443 1 111100
Q ss_pred --E----CC----------EEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 168 --L----GG----------VYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 168 --~----~g----------~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
+ +. ...|++.+ +++.+++||+.+++.|+++
T Consensus 334 ~~~~~~~~~~~~p~a~~~~~~~l~lP~-~~~l~~~dv~~i~~~l~~~ 379 (380)
T TIGR03588 334 PYYRQGFGDGDLPSAENFYLAEISLPL-HPALTLEQQQRVVETLRKV 379 (380)
T ss_pred hhhhccCCcCCCcHHHHHHhceEEcCC-CCCCCHHHHHHHHHHHHHh
Confidence 0 00 15688765 7899999999999999875
No 133
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=96.45 E-value=0.026 Score=50.07 Aligned_cols=101 Identities=22% Similarity=0.314 Sum_probs=66.6
Q ss_pred CCCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHH
Q 041549 20 ELADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLW 97 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w 97 (218)
.++|-+...+.|++.++-+ .|++..+++... +.+.....+.+ .. ...+..|
T Consensus 186 ~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l~-~~~~~~~~~~g--------------------~~------~s~~~a~ 238 (366)
T PRK08247 186 EGADIVIHSATKYLGGHNDVLAGLVVAKGQELC-ERLAYYQNAAG--------------------AV------LSPFDSW 238 (366)
T ss_pred cCCcEEEeecceeccCCCceeeeEEecChHHHH-HHHHHHHHhcC--------------------CC------CChHHHH
Confidence 3689999999999998754 566655444332 22211000000 00 1123456
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CCCceeEEEEecC
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-PRKCALVCFRLKP 149 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~~~~~iV~Fr~~~ 149 (218)
+.++ |.+.+..++++..+.++.+.+.|+++|++..+. |+..++++|.+.+
T Consensus 239 l~~~--~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P~~gg~~sf~~~~ 289 (366)
T PRK08247 239 LLIR--GMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYPGRGGMLSFRLQD 289 (366)
T ss_pred HHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecCCcCcEEEEEECC
Confidence 5544 556777888888999999999999999998654 4488999998863
No 134
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=96.42 E-value=0.018 Score=51.88 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=67.0
Q ss_pred CCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|.+..++|||+.++=+ .|+++.++. .+...+. .++.... .....+..|+
T Consensus 206 gaDivv~S~tK~l~g~g~~~gG~v~~~~~-~~~~~l~---~~~~~~g-----------------------~~~s~~~a~l 258 (403)
T PRK07810 206 GADVVVYSGTKHIDGQGRVLGGAILGDRE-YIDGPVQ---KLMRHTG-----------------------PALSAFNAWV 258 (403)
T ss_pred CCcEEEccCCceecCCcCceeEEEEeChH-HHHHHHH---HHHHHhC-----------------------CCCCHHHHHH
Confidence 689999999999987543 577766544 2221111 1111100 0123455665
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C-----C-----------CceeEEEEecC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P-----R-----------KCALVCFRLKP 149 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~-----~-----------~~~iV~Fr~~~ 149 (218)
.+ .|.+.+..++++..+.|.++++.|+++|.++-+. | | -.++++|.+++
T Consensus 259 ~l--~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~ 324 (403)
T PRK07810 259 LL--KGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDA 324 (403)
T ss_pred HH--hccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcC
Confidence 43 4778899999999999999999999999986554 3 1 25699999975
No 135
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=96.38 E-value=0.023 Score=51.08 Aligned_cols=103 Identities=20% Similarity=0.298 Sum_probs=69.5
Q ss_pred CCCeeeecccccCCCc--cceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTN--MDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P--~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
+||-+.-+.-|++.+. .-.|++.+++...+.+.+......++. + ..+...|+
T Consensus 192 GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~--------------------~------~~p~da~l 245 (386)
T PF01053_consen 192 GADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGA--------------------T------LSPFDAWL 245 (386)
T ss_dssp T-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT---------------------B--------HHHHHH
T ss_pred CceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCc--------------------c------chHHHHHH
Confidence 4999999999999854 346888877743333322211000110 0 13566776
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cC----------------CCceeEEEEecCCC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-EP----------------RKCALVCFRLKPKR 151 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~~----------------~~~~iV~Fr~~~~~ 151 (218)
.+| |.+.+..++++..+.|+.+++.|+++|.++-+ .| ...++++|.+++..
T Consensus 246 l~r--gl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~ 313 (386)
T PF01053_consen 246 LLR--GLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGE 313 (386)
T ss_dssp HHH--HHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHH
T ss_pred Hhc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccch
Confidence 654 88999999999999999999999999999744 44 23479999998753
No 136
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=96.36 E-value=0.042 Score=49.68 Aligned_cols=97 Identities=12% Similarity=0.033 Sum_probs=58.7
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceeEEEEecCCCc-----chHHHh-hc-eeecceEE
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKCALVCFRLKPKRE-----SDGSEL-NQ-LSLTQATL 168 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~~iV~Fr~~~~~~-----~~~~~L-n~-~~vs~~~~ 168 (218)
.+++.+-.+.+.+ +..++.+++.+.|++..++..+.+ ....++.|.+.+.+. .....+ ++ .++.+
T Consensus 318 a~l~~l~~~~~~~---~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~--- 391 (423)
T PRK05964 318 ASLDLFEDEPVLE---RVAALSAGLAEGLEPFRDLPGVADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRP--- 391 (423)
T ss_pred HHHHHHHhcCHHH---HHHHHHHHHHHHHHhhccCCCeEEeecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEe---
Confidence 3455554454544 445788888888877544433322 234556777754321 112222 23 34432
Q ss_pred CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 169 GGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 169 ~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
.+ ..||+++. ..+|++|||++++.+++...|+
T Consensus 392 ~~-~~lR~~p~-l~~t~edId~~v~~l~~al~~~ 423 (423)
T PRK05964 392 LG-NTIYLMPP-YIITAEELDRITDAIVEVADEL 423 (423)
T ss_pred cC-CEEEEeCC-cccCHHHHHHHHHHHHHHHhhC
Confidence 12 47999984 7999999999999999887653
No 137
>PRK06234 methionine gamma-lyase; Provisional
Probab=96.31 E-value=0.036 Score=49.85 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=65.3
Q ss_pred CCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|.+..+++|++.+|-. .|++..+++ .. +.+... .... . ++. .......|+
T Consensus 202 g~Divv~S~sK~l~g~g~~~gG~v~~~~~-~~-~~l~~~----~~~~--------------~--~g~----~l~p~~a~l 255 (400)
T PRK06234 202 GADVVVHSATKYLNGHGDVIAGFVVGKEE-FI-NQVKLF----GIKD--------------M--TGS----VIGPFEAFL 255 (400)
T ss_pred CCcEEEeeccccccCCCCceeEEEEecHH-HH-HHHHHH----HHHH--------------h--cCC----CCCHHHHHH
Confidence 689999999999998764 577776553 32 222110 0000 0 000 112344555
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C-----C-----------CceeEEEEecCC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P-----R-----------KCALVCFRLKPK 150 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~-----~-----------~~~iV~Fr~~~~ 150 (218)
.+ .|.+.+..++++..+.++++++.|+++|.+.-+. | | ..++++|.+++.
T Consensus 256 ~~--~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~ 322 (400)
T PRK06234 256 II--RGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGG 322 (400)
T ss_pred HH--hccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCc
Confidence 54 4566777888889999999999999999875543 3 1 256899999753
No 138
>PRK10534 L-threonine aldolase; Provisional
Probab=96.25 E-value=0.042 Score=47.62 Aligned_cols=82 Identities=6% Similarity=0.128 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc-chHHHhhc--eeecceEECCEEEEEEecCCCCCcHH
Q 041549 110 YHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE-SDGSELNQ--LSLTQATLGGVYVIRCSIGTTLTQDR 186 (218)
Q Consensus 110 ~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~-~~~~~Ln~--~~vs~~~~~g~~~lR~~~~n~~tt~~ 186 (218)
+.+++..+.++++.+.|++. ++++.. |..+.+.+++.+.+. +..+.|.+ +.+.+ + ..+|++. ++.++.+
T Consensus 247 ~~~~~~~~~r~~l~~~L~~~-g~~~~~-~~~nfv~~~~~~~~~~~~~~~l~~~gi~v~~----~-~~~rl~~-~~r~t~e 318 (333)
T PRK10534 247 ARLQEDHDNAAWLAEQLREA-GADVMR-QDTNMLFVRVGEEQAAALGEYMRERNVLINA----S-PIVRLVT-HLDVSRE 318 (333)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCccCC-CCceEEEEECCchhHHHHHHHHHHcCeeecC----C-ceEEEEE-EeCCCHH
Confidence 44555556678999999987 888664 578888888764222 22334444 33432 3 2489987 4688999
Q ss_pred HHHHHHHHHHHHH
Q 041549 187 HIDDLRKLIQEKA 199 (218)
Q Consensus 187 di~~l~~~l~~~~ 199 (218)
+++++++.|.+..
T Consensus 319 ~~~~~~~~l~~~~ 331 (333)
T PRK10534 319 QLAEVVAHWRAFL 331 (333)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999997553
No 139
>PRK07503 methionine gamma-lyase; Provisional
Probab=96.25 E-value=0.082 Score=47.64 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=65.5
Q ss_pred CCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
.+|.+..+++||+.++-+ .|+++ .++... +.+... .... .... +...+..|+
T Consensus 201 g~Di~v~S~tK~l~g~gd~~gG~v~-~~~~l~-~~l~~~----~~~~--------------~~g~------~~s~~~a~l 254 (403)
T PRK07503 201 GADLVVHSATKYLGGHGDITAGLVV-GGKALA-DRIRLE----GLKD--------------MTGA------VMSPFDAFL 254 (403)
T ss_pred CCCEEEccccccccCCCceeEEEEE-cCHHHH-HHHHhh----hHHh--------------CcCC------CCCHHHHHH
Confidence 689999999999998754 67766 444332 222210 0000 0001 113455566
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C-----C-----------CceeEEEEecC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P-----R-----------KCALVCFRLKP 149 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~-----~-----------~~~iV~Fr~~~ 149 (218)
.++ |.+.+..++++..+.++.+.+.|+++|.++.+. | | ..++++|..++
T Consensus 255 ~l~--~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~ 320 (403)
T PRK07503 255 LMR--GLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKG 320 (403)
T ss_pred HHc--CcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECC
Confidence 544 667888889999999999999999999887552 2 1 25689998864
No 140
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=96.25 E-value=0.033 Score=49.75 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCC--cchHHHh-hc--eeecce----EECCEEEEEEecCCCC
Q 041549 112 IRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKR--ESDGSEL-NQ--LSLTQA----TLGGVYVIRCSIGTTL 182 (218)
Q Consensus 112 i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~--~~~~~~L-n~--~~vs~~----~~~g~~~lR~~~~n~~ 182 (218)
.++..++++++.+.|++. +++++. +..+++.+...... .+..+.| .+ +++.+. .-.|..+||++++ .+
T Consensus 301 ~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~i~~i~~~~~~~a~~~~~~L~~~~Gi~v~~~~~p~~~~g~~~lRis~~-~~ 377 (402)
T TIGR01821 301 RRAHQENVKRLKNLLEAL-GIPVIP-NPSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINYPTVPRGTERLRITPT-PA 377 (402)
T ss_pred HHHHHHHHHHHHHHHHHc-CCCcCC-CCCCEEEEEeCCHHHHHHHHHHHHhcCCEEEEeECCCCCCCCCceEEEEeC-CC
Confidence 334457899999999886 787664 46778877653211 1223444 23 344321 1134468999994 79
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 041549 183 TQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 183 tt~~di~~l~~~l~~~~~~~ 202 (218)
.|++||+++++.|+++.+++
T Consensus 378 ~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 378 HTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred CCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999887654
No 141
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=96.12 E-value=0.026 Score=51.66 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=90.0
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHH
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTV 99 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~ 99 (218)
+.+|.+++++||-+.+|.| |++.++|+...+..-.....|-+ +..|+--.+|.-+|+++ +
T Consensus 249 s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~~~~r~~~~~~eG-----------------~~tygg~~grd~~alAv--g 308 (460)
T PRK13237 249 SYADGCTMSGKKDCLVNIG-GFLAMNDEELFDEAKELVVVYEG-----------------MPSYGGMAGRDMEAMAI--G 308 (460)
T ss_pred CcCcEEEEeCCCCCCCCCc-eEEEECCHHHHHHHHHhccccCC-----------------CcCCCChhhhHHHHHHh--H
Confidence 5899999999999999984 88889888765322112112211 11121112344444443 2
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEec------CCCc----chHHHhhc---------
Q 041549 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLK------PKRE----SDGSELNQ--------- 160 (218)
Q Consensus 100 l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~------~~~~----~~~~~Ln~--------- 160 (218)
|...-.+ ..+++.++.+++|.+.|.+. |+.++.|....-|-.... |... .....|-.
T Consensus 309 l~E~~~~---~y~~~ri~~~~~l~~~L~~~-Gvpv~~p~ggH~v~vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~e~ 384 (460)
T PRK13237 309 IEESVQY---EYIEHRVGQVRYLGEKLLAA-GVPIVEPVGGHAVFLDARRFLPHLPQDQFPAQALAAELYIESGVRSMER 384 (460)
T ss_pred HHhhchH---HHHHHHHHHHHHHHHHHHHC-CCceecCCCceEEEEEhHHhCCCCCcccChHHHHHHHHHHHhCcCeEee
Confidence 3322122 67777788999999999985 999998654444433221 1111 11222221
Q ss_pred eeecceE--------ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 161 LSLTQAT--------LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 161 ~~vs~~~--------~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
+-++..+ ...--.+|+++--=--|.+|+|-+.+.|..+.++
T Consensus 385 g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 433 (460)
T PRK13237 385 GIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKH 433 (460)
T ss_pred cceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHh
Confidence 1111000 0112579998844345688999999988887654
No 142
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=96.08 E-value=0.048 Score=48.85 Aligned_cols=87 Identities=18% Similarity=0.243 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-C-cchHHHh-hc--eeecc----eEECCEEEEEEecCCCCC
Q 041549 113 RSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-R-ESDGSEL-NQ--LSLTQ----ATLGGVYVIRCSIGTTLT 183 (218)
Q Consensus 113 ~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~-~~~~~~L-n~--~~vs~----~~~~g~~~lR~~~~n~~t 183 (218)
.+..++.+++.+.|++. +++++ ++..+++.+...+. . .+..+.| .+ .++.. +.-.|...||+++ +.++
T Consensus 302 ~~~~~~~~~l~~~L~~~-g~~~~-~~~~~i~~v~~~~~~~~~~l~~~L~~~~Gi~v~~~~~p~~p~g~~~iRis~-~~~~ 378 (406)
T PRK13393 302 ERHQDRVARLRARLDKA-GIPHL-PNPSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINYPTVPRGTERLRITP-SPLH 378 (406)
T ss_pred HHHHHHHHHHHHHHHHc-CCCcC-CCCCCeEEEEeCCHHHHHHHHHHHHHhCCEEEEeECCCCCCCCCceEEEEE-CCCC
Confidence 34467888999999885 77766 45677777765321 1 1223444 32 33332 1123446799999 4799
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 041549 184 QDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 184 t~~di~~l~~~l~~~~~~~ 202 (218)
+++|||++++.|+++..++
T Consensus 379 t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 379 TDADIEHLVQALSEIWARL 397 (406)
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999987654
No 143
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=96.02 E-value=0.14 Score=44.63 Aligned_cols=165 Identities=11% Similarity=0.013 Sum_probs=99.1
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcC-C--c--ccccccCCCCCCCCCCCCccCCcCccccCCCCCc---
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST-K--S--DIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK--- 92 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~-~--~--~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~--- 92 (218)
++|..-...+|-++.|.|.|.+.+.++.. ..+.. . + -|...... .++....-+. |.+-
T Consensus 195 gVDvaytgSQKaL~aP~GLsiisfS~ka~--~~~~~rK~~~~~~yFd~~~~-----------~~~wgc~~e~-~~yhhT~ 260 (385)
T KOG2862|consen 195 GVDVAYTGSQKALGAPAGLSIISFSDKAL--EAIRDRKTKPVSFYFDILRL-----------GNFWGCDGEP-RAYHHTP 260 (385)
T ss_pred cccEEEecchhhcCCCCCcceeecCHHHH--HHHhhccCCceEEEEeHHhh-----------cchhccCCcc-cccccCC
Confidence 46778888999999999999988877753 23221 1 1 22221110 1111110010 2221
Q ss_pred hh----HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec---CCCceeE-EEEecC-CCc-chHHHhhcee
Q 041549 93 AL----KLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE---PRKCALV-CFRLKP-KRE-SDGSELNQLS 162 (218)
Q Consensus 93 al----~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~---~~~~~iV-~Fr~~~-~~~-~~~~~Ln~~~ 162 (218)
.+ .+=.+|..+-.+|+.+.++++-+++++++..|++. |+++.. ++.++.| ....+. .|. +.+..+.+.|
T Consensus 261 pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~~rlptvttv~vp~gvDw~dVv~~~~~~~ 339 (385)
T KOG2862|consen 261 PVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEAL-GLQLFVVDEELRLPTVTTVKVPYGVDWKDVVAYAMSHY 339 (385)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccceecChhhccCcceeeecCCCCCHHHHHHHHHHhc
Confidence 11 22235677899999999999999999999999997 888775 2344433 333322 222 2233343322
Q ss_pred ec--ceEEC--CEEEEEEecCCCCCcHHHHHHHHHHHHHHHH
Q 041549 163 LT--QATLG--GVYVIRCSIGTTLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 163 vs--~~~~~--g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~ 200 (218)
.. ...++ .+.++|+-....+.+-+.|+..++.|+....
T Consensus 340 ~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq 381 (385)
T KOG2862|consen 340 VVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQ 381 (385)
T ss_pred CEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHh
Confidence 11 11111 2468999887889999999999988876644
No 144
>PRK06108 aspartate aminotransferase; Provisional
Probab=95.98 E-value=0.08 Score=46.66 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcee-EEEEecCC-Cc-chHHHh-hc--eeecceE-E--CCEEEE
Q 041549 104 GYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCAL-VCFRLKPK-RE-SDGSEL-NQ--LSLTQAT-L--GGVYVI 174 (218)
Q Consensus 104 G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~i-V~Fr~~~~-~~-~~~~~L-n~--~~vs~~~-~--~g~~~l 174 (218)
|.+-+++..++..+..+++.+.|++.+++++.. |..+. +.+++.+. +. +..+.| .+ +++.+.. . .+..++
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-p~~g~~~~~~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~ 358 (382)
T PRK06108 280 GEDFVAELVARLRRSRDHLVDALRALPGVEVAK-PDGAMYAFFRIPGVTDSLALAKRLVDEAGLGLAPGTAFGPGGEGFL 358 (382)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC-CCeeEEEEEeCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEE
Confidence 444566777777788899999999888888775 44454 44566532 22 233444 33 3443321 1 234689
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 175 RCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 175 R~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
|++++. +++++++.++.|.+..
T Consensus 359 Ris~~~---~~~~l~~~l~~l~~~l 380 (382)
T PRK06108 359 RWCFAR---DPARLDEAVERLRRFL 380 (382)
T ss_pred EEEecC---CHHHHHHHHHHHHHHH
Confidence 999963 7899999988887653
No 145
>PRK04311 selenocysteine synthase; Provisional
Probab=95.85 E-value=0.14 Score=47.18 Aligned_cols=151 Identities=15% Similarity=0.102 Sum_probs=78.9
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHH
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTV 99 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~ 99 (218)
.+||.+++++|||+++|. +|+++.+++. . +.+..++ ....... | ..++ .++..|+.
T Consensus 282 ~GaDiv~fSg~K~LgGp~-~G~i~g~~~l-i-~~l~~~~-~~r~lr~------------d--k~~l------~~l~~~l~ 337 (464)
T PRK04311 282 AGVDLVTFSGDKLLGGPQ-AGIIVGKKEL-I-ARLKKHP-LKRALRV------------D--KLTL------AALEATLR 337 (464)
T ss_pred cCCcEEEecCcccccCCc-eEEEEEcHHH-H-HHHhhch-hHHHHhc------------c--hHHH------HHHHHHHH
Confidence 479999999999999994 8999987653 2 3332221 1110000 0 0011 12222221
Q ss_pred --------HHH-hcHHHHHHHHHHHHHHHHHHHHHHhcCC--C--eEEecC---------C--CceeEEEEecCC--Cc-
Q 041549 100 --------IRK-HGYSGLMYHIRSDVNMAKRFEAMVAKDE--R--FETVEP---------R--KCALVCFRLKPK--RE- 152 (218)
Q Consensus 100 --------l~~-~G~~g~~~~i~~~~~la~~l~~~L~~~~--~--~el~~~---------~--~~~iV~Fr~~~~--~~- 152 (218)
++. -+...+..++++..+.|+.+++.|++++ + .+++.. | .++.++..+.+. +.
T Consensus 338 ~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~~~~~~ 417 (464)
T PRK04311 338 LYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPKDRSLE 417 (464)
T ss_pred HHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCCCCCHH
Confidence 111 1223356666777788888888888764 3 355521 2 234444444332 22
Q ss_pred chHHHhhc---eeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 153 SDGSELNQ---LSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 153 ~~~~~Ln~---~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
+...+|.+ ..+. ..-++..+| -+ -...++|++.+++.|+++.
T Consensus 418 ~l~~~lr~~~~~i~~-r~~~~~~~l--d~--r~~~~~~~~~~~~~~~~~~ 462 (464)
T PRK04311 418 ALAARLRLLPPPVIG-RIEDGRLLL--DL--RTLEEEDEERLAAALLEAL 462 (464)
T ss_pred HHHHHHhcCCCCEEE-EEECCEEEE--Ee--CcCCHHHHHHHHHHHHHHh
Confidence 22344544 2222 223454332 22 2345788999998888764
No 146
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=95.83 E-value=0.13 Score=45.32 Aligned_cols=142 Identities=11% Similarity=0.084 Sum_probs=76.8
Q ss_pred CCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHHHH
Q 041549 22 ADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIR 101 (218)
Q Consensus 22 aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~l~ 101 (218)
.|.++ +.|.+...+..|+++..++ .. +.+... ... ..++. -+.....+..+|+
T Consensus 232 ~d~~t--~sK~~~~G~riG~~~~~~~-~~-~~~~~~----~~~----------------~~~~~---~~~~~~aa~aaL~ 284 (379)
T TIGR00707 232 PDIIT--LAKGLGGGVPIGATLAKEE-VA-EAFTPG----DHG----------------STFGG---NPLACAAALAVLE 284 (379)
T ss_pred CCEEE--EcccccCCcccEEEEEcHH-HH-hhhcCC----CCC----------------CCCCC---CHHHHHHHHHHHH
Confidence 35444 6899997788998887533 32 332210 000 01111 0112234444556
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-c--CCCceeEEEEecCCCcchHHHhhc--eeecceEECCEEEEEE
Q 041549 102 KHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-E--PRKCALVCFRLKPKRESDGSELNQ--LSLTQATLGGVYVIRC 176 (218)
Q Consensus 102 ~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~--~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~~~g~~~lR~ 176 (218)
.+...++.+.+ .++++++++.|++. +.+.. . ++..+++.++..+...+..+.|.+ +++.+ .+..++|+
T Consensus 285 ~~~~~~~~~~~---~~~~~~~~~~l~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~Gv~v~~---~~~~~lRi 357 (379)
T TIGR00707 285 VIEKERLLENV---KEKGDYFKERLEEL-GKNYPNKEVRGKGLMLGIELEAPCKDIVKKALEKGLLVNC---AGPKVLRF 357 (379)
T ss_pred HHHhhhHHHHH---HHHHHHHHHHHHHH-HhhCCCCccccCceEEEEEecCcHHHHHHHHHHCCcEEee---CCCCEEEE
Confidence 55444444444 46777777777664 22211 1 123456677665322223344444 44543 23468999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHH
Q 041549 177 SIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 177 ~~~n~~tt~~di~~l~~~l~~~ 198 (218)
+++ ...++++|+++++.|+++
T Consensus 358 ~~~-~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 358 LPP-LIITKEEIDEAVSALEEA 378 (379)
T ss_pred ECC-CcCCHHHHHHHHHHHHHh
Confidence 984 568899999999999764
No 147
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=95.80 E-value=0.35 Score=43.91 Aligned_cols=174 Identities=17% Similarity=0.081 Sum_probs=102.7
Q ss_pred cCCCCCCeeeecccccCCCcc-----ceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCC
Q 041549 17 NGVELADSVSLNPHKWFLTNM-----DCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRF 91 (218)
Q Consensus 17 ~gi~~aDSi~~d~HK~l~~P~-----~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~ 91 (218)
.|-=++|-+-+|.||...+|- |.|-+-|+.. |...+ ..|. ..+...... ...+.. +++.-++.+
T Consensus 253 PGd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~--L~pfL-P~p~-~~~~~~~y~------~~~~~~-~s~g~~~a~ 321 (496)
T COG1003 253 PGDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAH--LAPFL-PGPV-VYHDVGEYR------LDYDGK-KSIGVSAAP 321 (496)
T ss_pred ccccccceEEeecccccccCCCCCCCCCCceehHhh--ccccC-CCCc-ccCCCcccc------ccCCCC-ccceeeccc
Confidence 466688999999999988885 4667777743 22222 2211 111110000 000011 112112221
Q ss_pred ----ch-hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC---ceeEEEEecC------CCcchH-H
Q 041549 92 ----KA-LKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRK---CALVCFRLKP------KRESDG-S 156 (218)
Q Consensus 92 ----~a-l~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~---~~iV~Fr~~~------~~~~~~-~ 156 (218)
.. +..|+-++.+|.+|+++.-+..+-.|+|++.+|+. .++++-.+. -.=+.+..++ ....++ .
T Consensus 322 ~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~--~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAK 399 (496)
T COG1003 322 YGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKG--YYPVPYTGENRVAHECILDARPLKKETGVRALDVAK 399 (496)
T ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh--cCccccCCCCcceeEEEeechHhHhhcCCcHHHHHH
Confidence 12 46888899999999999999999999999999986 677754332 2223343332 112222 3
Q ss_pred Hhhc-eeecceE-----ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 041549 157 ELNQ-LSLTQAT-----LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLLQ 206 (218)
Q Consensus 157 ~Ln~-~~vs~~~-----~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~~ 206 (218)
+|-+ +|-.+|. +.+- |=+=++ ..-+.+++|++++++.++..++....
T Consensus 400 rLlD~GfHaPT~~FPliV~~t--LMIEPT-EsEsk~eLDrf~dami~I~~Ea~~~~ 452 (496)
T COG1003 400 RLLDYGFHAPTMYFPLIVAGT--LMIEPT-ESESKEELDRFIDAMIAIREEADAVP 452 (496)
T ss_pred HHHhcCCCCCcccCccccccc--eeecCC-CCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 4544 4444332 3342 434454 46678999999999999998886654
No 148
>PRK07908 hypothetical protein; Provisional
Probab=95.79 E-value=0.12 Score=45.22 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecce-EEC--CEEEEEEecCC
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQA-TLG--GVYVIRCSIGT 180 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~-~~~--g~~~lR~~~~n 180 (218)
+-+++..++..+..+++.+.|++. ++++..|+..+.+.+++++ ..+....+.+ +.+.+. ... +..++|++++
T Consensus 253 ~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~~~~~~~~~-~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~- 329 (349)
T PRK07908 253 AEAAADAARLAADRAEMVAGLRAV-GARVVDPAAAPFVLVRVPD-AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR- 329 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CcEeccCCCceEEEEECCc-HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC-
Confidence 445566666678888899999987 8888776777788887764 2233344544 333321 111 3568999984
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 041549 181 TLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 181 ~~tt~~di~~l~~~l~~~~ 199 (218)
++++++++++.|+++.
T Consensus 330 ---~~~~~~~l~~al~~~~ 345 (349)
T PRK07908 330 ---PRAEVPVLVQALAEIL 345 (349)
T ss_pred ---CCccHHHHHHHHHHHH
Confidence 5779999999998763
No 149
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=95.76 E-value=0.036 Score=49.98 Aligned_cols=162 Identities=14% Similarity=0.130 Sum_probs=83.1
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcchhhhhc--CCcccccccCCCCCCCCCCCCccCCcCccccCCCCCc-hhH
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQS--TKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK-ALK 95 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~--~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~-al~ 95 (218)
++.||.++...||.|.+|-+ |+++++....-.+.-. .+..|-..-+. ..+ .+++++=... ...
T Consensus 220 ~~~ADvvt~sThKtl~GPrg-giI~~~~~~~~~~~~~~~~~~~l~~~I~~---------avf----P~~qg~~h~~~iaa 285 (399)
T PF00464_consen 220 FPYADVVTGSTHKTLRGPRG-GIILTNKGSKNVDKKGKEIDEELAEKIDS---------AVF----PGLQGGPHMHRIAA 285 (399)
T ss_dssp CCTSSEEEEESSGGG-SSS--EEEEES-SEEEE-TTS-EEEHHHHHHHHH---------HHT----TTT-SS--HHHHHH
T ss_pred cccceEEEeeccccccccCc-eEEEEcCCccccCCcccccHHHHHHHhcc---------ccC----CCcccCcchhHHHH
Confidence 56799999999999999987 8888883211000000 00011000000 000 0112111111 223
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceeEEEEecCCC--c-chHHHhhce--eecceEE-
Q 041549 96 LWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP-RKCALVCFRLKPKR--E-SDGSELNQL--SLTQATL- 168 (218)
Q Consensus 96 ~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-~~~~iV~Fr~~~~~--~-~~~~~Ln~~--~vs~~~~- 168 (218)
+-.+++..-...+++..++.+++|+.|++.|.+. |++++.. .+..+|.....+.+ . +....|.+. .+....+
T Consensus 286 lAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~-G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP 364 (399)
T PF00464_consen 286 LAVALKEALSPEFKEYAKQVVKNAKALAEALQER-GFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIP 364 (399)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHT-T-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--T
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhC-CcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccC
Confidence 3346666666667788888899999999999996 9999963 67788888776432 1 222344441 1111111
Q ss_pred --C---CEEEEEEecCC---CCCcHHHHHHHHHHH
Q 041549 169 --G---GVYVIRCSIGT---TLTQDRHIDDLRKLI 195 (218)
Q Consensus 169 --~---g~~~lR~~~~n---~~tt~~di~~l~~~l 195 (218)
+ ....||+-..- --..++||+++-+.|
T Consensus 365 ~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I 399 (399)
T PF00464_consen 365 GDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAELI 399 (399)
T ss_dssp TTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred CCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence 1 13469987521 134566666665543
No 150
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=95.67 E-value=0.083 Score=45.21 Aligned_cols=158 Identities=14% Similarity=0.054 Sum_probs=92.5
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCc-hhHHHH
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK-ALKLWT 98 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~-al~~w~ 98 (218)
-+||+|.-++||-|-+.-+||++-++.+-. ...+.....+...... . -+.|+-++. .+-+-+
T Consensus 207 ~g~DFiVgSGHKsmAAs~PiGvl~~~eE~a-e~V~r~Sg~~~~~KEv------------e----llGCT~rGapivTlmA 269 (382)
T COG1103 207 IGADFIVGSGHKSMAASAPIGVLAMSEEWA-EIVLRRSGRAFPKKEV------------E----LLGCTVRGAPIVTLMA 269 (382)
T ss_pred cCCCEEEecCccchhccCCeeEEeehhHHH-HHHHhhccccccccee------------e----eecccccCchHHHHHh
Confidence 479999999999999999999999998854 2233332222222111 1 145553332 222222
Q ss_pred HHHHh--cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceeEEEEecCCCc----------chHHHhhceeec
Q 041549 99 VIRKH--GYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKCALVCFRLKPKRE----------SDGSELNQLSLT 164 (218)
Q Consensus 99 ~l~~~--G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~~iV~Fr~~~~~~----------~~~~~Ln~~~vs 164 (218)
++-.. -...+.+- ++-|++|.+.+.++.|++.+.. -..-++-|--+.-.. .....|.+.-+.
T Consensus 270 SfP~V~eRVkrWdeE----v~kaR~fv~elEkigg~~qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~ 345 (382)
T COG1103 270 SFPHVVERVKRWDEE----VEKARWFVAELEKIGGVKQLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIH 345 (382)
T ss_pred cCHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHhcCcc
Confidence 22111 12333333 4689999999999988988863 345566665432211 011222221111
Q ss_pred ceEECC-EEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 165 QATLGG-VYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 165 ~~~~~g-~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
..-.| ..++++++ +-.++++++.+++++++++.+
T Consensus 346 -GI~~G~Tk~~K~sv--yGl~~Eqve~V~~afkeI~ek 380 (382)
T COG1103 346 -GIQPGQTKYFKLSV--YGLSWEQVEYVVDAFKEIAEK 380 (382)
T ss_pred -ccccCceeEEEEEe--ecCCHHHHHHHHHHHHHHHHh
Confidence 01123 35789887 678899999999999998764
No 151
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=95.66 E-value=0.11 Score=45.89 Aligned_cols=88 Identities=10% Similarity=0.034 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-Cc-chHHHh-hce-eecceE----ECCEEEEEEecCCCC
Q 041549 111 HIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-RE-SDGSEL-NQL-SLTQAT----LGGVYVIRCSIGTTL 182 (218)
Q Consensus 111 ~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~~-~~~~~L-n~~-~vs~~~----~~g~~~lR~~~~n~~ 182 (218)
.+++..++.+++.+.|++. ++++.. +..+++.+...+. +. +....| .+. .+.... -.+...+|++++ .+
T Consensus 286 ~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~~-~~ 362 (385)
T TIGR01825 286 LMERLWDNTRFFKAGLGKL-GYDTGG-SETPITPVVIGDEKAAQEFSRRLFDEGIFAQSIVFPTVPRGTARIRNIPT-AE 362 (385)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCCCCC-CCCCEEEEEECCHHHHHHHHHHHHHCCcEEcccCCCCCCCCCceEEEEEc-CC
Confidence 4455567889999999885 887764 4456676665432 11 122333 333 232111 124468999984 68
Q ss_pred CcHHHHHHHHHHHHHHHHH
Q 041549 183 TQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 183 tt~~di~~l~~~l~~~~~~ 201 (218)
++++||+++++.|++...+
T Consensus 363 ~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 363 HTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999887644
No 152
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=95.65 E-value=0.14 Score=46.18 Aligned_cols=167 Identities=15% Similarity=0.033 Sum_probs=98.0
Q ss_pred cCCCCCCeeeecccccC----CCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccC----C
Q 041549 17 NGVELADSVSLNPHKWF----LTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIAL----S 88 (218)
Q Consensus 17 ~gi~~aDSi~~d~HK~l----~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~----s 88 (218)
+|==+||-+.-|.+..+ ++-..||+|-+|++.. +.... ..++... +.. |...+. .++|. =
T Consensus 258 PGe~GADIvvG~~QrfGvPmgfGGPhag~fA~~~~~~--R~mPG--RlVG~S~-D~~------G~~A~r-LaLQTREQHI 325 (450)
T COG0403 258 PGEFGADIVVGSAQRFGVPMGFGGPHAGYFAVKDEFK--RQMPG--RLVGVSV-DAA------GKRAFR-LALQTREQHI 325 (450)
T ss_pred ccccCCceEEecCcccCCCcCCCCcceeeeeEhHhHh--hcCCC--ceeeeee-cCC------CCchhh-hhHHHHHHHH
Confidence 45567888888877643 4445688999988753 33322 2333221 111 222111 12322 2
Q ss_pred CCCc------------hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEecCCCceeEEEEecCCCc-ch
Q 041549 89 RRFK------------ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDE-RFETVEPRKCALVCFRLKPKRE-SD 154 (218)
Q Consensus 89 R~~~------------al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~-~~el~~~~~~~iV~Fr~~~~~~-~~ 154 (218)
||-+ |+..-+-+-++|.+|++++-++..+++.++++.|++.. +++++.+.-+.-+++++..... ..
T Consensus 326 RReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~fFdt~~v~~~~~~~~~l 405 (450)
T COG0403 326 RREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDHFFDTFTVRVPEEVAEAL 405 (450)
T ss_pred hhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccccceeeEEEecchhHHHHH
Confidence 3322 22222234579999999999999999999999999753 6999988777788888853111 11
Q ss_pred HHH-hhceeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 155 GSE-LNQLSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 155 ~~~-Ln~~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
..+ +...+- -..+... .+=+++. ..+|++||+.+++.+...
T Consensus 406 ~~~~~~~G~~-L~~~~~~-~~~ia~t-Et~t~~~i~~l~~~~~~~ 447 (450)
T COG0403 406 LAAAIAGGIN-LRRVDAD-TVLIALT-ETTTKEDIDALVAAFGGV 447 (450)
T ss_pred HHHHHhcCCc-eeeecCC-ceEEEee-cccCHHHHHHHHHHHhhh
Confidence 111 111111 1111121 3445664 689999999999988754
No 153
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=95.63 E-value=0.092 Score=46.91 Aligned_cols=159 Identities=15% Similarity=0.088 Sum_probs=87.7
Q ss_pred CCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHH
Q 041549 18 GVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLW 97 (218)
Q Consensus 18 gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w 97 (218)
-++.||-+|-..||.+.+|-| |+++++++... ..+... ++..-. |.+. ...+ | ...
T Consensus 216 P~~~AdvVTtTTHKTlrGPrG-G~Il~~~eel~-kkin~a---VFPg~q---------ggpl--~Hvi-------A-aka 271 (413)
T COG0112 216 PLPHADVVTTTTHKTLRGPRG-GIILTNDEELA-KKINSA---VFPGLQ---------GGPL--MHVI-------A-AKA 271 (413)
T ss_pred CCCccceEeCCcccCCCCCCc-eEEEeccHHHH-HHhhhh---cCCccC---------CChH--HHHH-------H-HHH
Confidence 478899999999999999998 88888875433 222110 111110 0000 0111 1 122
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceeEEEEecCC--CcchH-HH-------hhceeecce
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP-RKCALVCFRLKPK--RESDG-SE-------LNQLSLTQA 166 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-~~~~iV~Fr~~~~--~~~~~-~~-------Ln~~~vs~~ 166 (218)
.+++..-..++++...+.+.+|+.|++.|.+. |+++++- .+..++..-+.+. +-... .. +|+--+.-.
T Consensus 272 Va~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~-G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~It~NKN~iP~D 350 (413)
T COG0112 272 VAFKEALEPEFKEYAKQVVKNAKALAEALKER-GFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAGITVNKNAIPFD 350 (413)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHc-CCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcCEeeccCCCCCC
Confidence 34555556666666666689999999999995 9999963 3455555444422 21111 22 233111100
Q ss_pred --EECCEEEEEEec---CCCCCcHHHHHHHHHHHHHHHHH
Q 041549 167 --TLGGVYVIRCSI---GTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 167 --~~~g~~~lR~~~---~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
..-...-||+-. +---..++|++++.+.|.+....
T Consensus 351 ~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~ 390 (413)
T COG0112 351 PESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDG 390 (413)
T ss_pred CCCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhc
Confidence 000122377643 11234577888888877766544
No 154
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=95.61 E-value=0.22 Score=44.35 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=78.9
Q ss_pred CCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHHHH
Q 041549 22 ADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIR 101 (218)
Q Consensus 22 aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~l~ 101 (218)
.|-+++. |++..++.+|+++.++. .. +.+... .+. ....++.. +........+++
T Consensus 253 ~d~~t~s--K~l~~g~~~g~~~~~~~-~~-~~~~~~-~~~-----------------~~~t~~~~---~~~~~a~~a~l~ 307 (413)
T cd00610 253 PDIVTLG--KGLGGGLPLGAVLGREE-IM-DAFPAG-PGL-----------------HGGTFGGN---PLACAAALAVLE 307 (413)
T ss_pred CCeEEEc--ccccCccccEEEEEcHH-HH-HhhccC-CCC-----------------CCCCCCcC---HHHHHHHHHHHH
Confidence 4655554 99998898999887543 32 333000 000 00111110 112233444556
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHhcCCC-eEEec--CCCceeEEEEecCCCc------ch----HHHhhc--eeecce
Q 041549 102 KHGYSGLMYHIRSDVNMAKRFEAMVAKDER-FETVE--PRKCALVCFRLKPKRE------SD----GSELNQ--LSLTQA 166 (218)
Q Consensus 102 ~~G~~g~~~~i~~~~~la~~l~~~L~~~~~-~el~~--~~~~~iV~Fr~~~~~~------~~----~~~Ln~--~~vs~~ 166 (218)
.+..+.+.+++ .++.+++.+.|++... ..++. .+..+++++.+.+... .. .+.+.+ +++.+.
T Consensus 308 ~l~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~ 384 (413)
T cd00610 308 VLEEEGLLENA---AELGEYLRERLRELAEKHPLVGDVRGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPS 384 (413)
T ss_pred HHHhccHHHHH---HHHHHHHHHHHHHHHhhCCcEEEeecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeec
Confidence 55554444444 4688888888776421 12221 2456788888764310 11 223333 444432
Q ss_pred EECCEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 167 TLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 167 ~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
+...+|++++ ...+++||+++++.|++.
T Consensus 385 ---~~~~lR~~~~-~~~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 385 ---GGNVIRLLPP-LIITEEEIDEGLDALDEA 412 (413)
T ss_pred ---CCCEEEEECC-CcCCHHHHHHHHHHHHHh
Confidence 1457999984 678999999999998764
No 155
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=95.38 E-value=0.15 Score=45.91 Aligned_cols=148 Identities=12% Similarity=0.110 Sum_probs=87.4
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcC-CcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST-KSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
+.+|.+...+-|-++ +.|.++.-+... .+.+.. ..+|++... ++ +..+...-.
T Consensus 231 ~~vdi~~gTlsKAlG---s~Gg~v~g~~~~-~d~L~~~ar~~ifSta-------------------lp---P~~aaa~~~ 284 (388)
T COG0156 231 EEVDIIVGTLGKALG---SSGGYIAGSAAL-IDYLRNRARPFIFSTA-------------------LP---PAVAAAALA 284 (388)
T ss_pred ccceEEEEEchhhhc---ccCceeeCcHHH-HHHHHHhCCceeccCC-------------------CC---HHHHHHHHH
Confidence 345899999999998 556666666644 333332 345555432 11 012222333
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc--chHHHh-hc-eee----cceEECC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE--SDGSEL-NQ-LSL----TQATLGG 170 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~--~~~~~L-n~-~~v----s~~~~~g 170 (218)
+++.+- ...++.++..+++.++.+.++.. ++.+ .+..++|+.+-..+... +..+.| .+ .++ .+|+-+|
T Consensus 285 al~~l~--~~~~~r~~L~~~~~~~~~~~~~~-~~~~-~~s~s~I~pv~~gd~~~a~~~s~~l~~~Gi~v~~i~~PTVp~g 360 (388)
T COG0156 285 ALRILE--EGPERRERLQELAAFFRSLLKAL-GLVL-LPSESPIIPVILGDEERALEASRALLEEGIYVSAIRPPTVPKG 360 (388)
T ss_pred HHHHHH--hCHHHHHHHHHHHHHHHHHHHhc-CCcc-CCCCCCeeeeEeCCHHHHHHHHHHHHHCCeeEeeecCCCCCCC
Confidence 444433 22233334446788888666553 6655 35678898887765321 112333 33 332 2455577
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
..-||++++ ...|++||+++++.+.+.
T Consensus 361 tarlRi~lt-a~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 361 TARLRITLT-AAHTEEDIDRLAEALSEV 387 (388)
T ss_pred cceEEEEec-CCCCHHHHHHHHHHHHhh
Confidence 778999995 788999999999998864
No 156
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=95.32 E-value=0.065 Score=49.00 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=92.8
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
.+.||+++++.||-.++|.| |++.++++...+..-.....| + | +..|+.-.+|.-+|+..
T Consensus 241 ~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~~k~r~~~~~~-e-------------G---~~tyGgla~r~~~ala~-- 300 (450)
T TIGR02618 241 MSYADGCTMSGKKDCLVNIG-GFLCMNDDEMFQSAKELVVVF-E-------------G---MPSYGGLAGRDMEAMAI-- 300 (450)
T ss_pred hccCcEEEEeeccCCCCCCc-eEEEeCCHHHHHHHHHHhhhc-C-------------C---ccccCchhhhhHHHHHH--
Confidence 45799999999999999996 777778886653322121122 1 0 11122212222223322
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC------Cc----chHHHhhc--------
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK------RE----SDGSELNQ-------- 160 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~------~~----~~~~~Ln~-------- 160 (218)
+|...-. +..+++.+..+++|.+.|.+. |+.++.|+..++|-+..... .. .....|-.
T Consensus 301 gL~e~~~---~~y~~~r~~~a~~La~~L~~~-Gvpv~~p~ggh~V~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~e 376 (450)
T TIGR02618 301 GIREAVD---YEYIEHRVKQVRYLGDKLKAA-GVPIVEPVGGHAVFLDARRFLPHIPQDQFPAQSLAASIYVETGVRSME 376 (450)
T ss_pred HHHHhhh---HHHHHHHHHHHHHHHHHHHHC-CCcccCCCCcceEEEEhHHhCCCCChhhChHHHHHHHHHHHhCccEEe
Confidence 2332211 156666678899999999998 99998888888887764421 11 11122221
Q ss_pred -eeecceE--------ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 161 -LSLTQAT--------LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 161 -~~vs~~~--------~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
+-++..+ ...--.+|+++.-=--|.+|+|.+.+.|..+.++
T Consensus 377 ~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~ 426 (450)
T TIGR02618 377 RGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKH 426 (450)
T ss_pred ecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 1111000 0112569998844345688999999988887654
No 157
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=95.28 E-value=0.71 Score=41.02 Aligned_cols=146 Identities=10% Similarity=0.063 Sum_probs=77.4
Q ss_pred CCeeeecccccCCCcc-ceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHHH
Q 041549 22 ADSVSLNPHKWFLTNM-DCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVI 100 (218)
Q Consensus 22 aDSi~~d~HK~l~~P~-~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~l 100 (218)
.|-+++. |++..++ ..|+++++++- . +.+... . .. .. ++ + -+......-.++
T Consensus 240 pd~~~~s--K~l~~g~~~ig~v~~~~~~-~-~~~~~~-~---~~-----------~t-----~~--~-~~~~~~aa~~~l 292 (400)
T PTZ00125 240 PDIVLLG--KALSGGLYPISAVLANDDV-M-LVIKPG-E---HG-----------ST-----YG--G-NPLACAVAVEAL 292 (400)
T ss_pred CCEEEEc--ccccCCCcCcEEEEEcHHH-H-hhccCC-C---CC-----------CC-----CC--c-CHHHHHHHHHHH
Confidence 5777765 9998876 88988886642 2 332210 0 00 00 10 0 001111222234
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCCceeEEEEecCCCc----chHHHhhc--eeecceEECC
Q 041549 101 RKHGYSGLMYHIRSDVNMAKRFEAMVAKD----ERFETVEPRKCALVCFRLKPKRE----SDGSELNQ--LSLTQATLGG 170 (218)
Q Consensus 101 ~~~G~~g~~~~i~~~~~la~~l~~~L~~~----~~~el~~~~~~~iV~Fr~~~~~~----~~~~~Ln~--~~vs~~~~~g 170 (218)
+.+-.+++.++++ ++.+++.+.|++. +.+..+ .+...++.+.+.+.+. +..+.+.+ .++.+ .+
T Consensus 293 ~~i~~~~~~~~~~---~~~~~l~~~l~~l~~~~~~~~~~-~~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~---~~ 365 (400)
T PTZ00125 293 EVLKEEKLAENAQ---RLGEVFRDGLKELLKKSPWVKEI-RGKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKP---TH 365 (400)
T ss_pred HHHHhcCHHHHHH---HHHHHHHHHHHHHHhcCCCeEEE-ecccEEEEEEEccCcchHHHHHHHHHHHCCeEEee---cC
Confidence 5554445555554 4566666666553 322222 2334455555543211 11233332 34443 23
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
..+||++++ ...++++|+++++.|.+...++
T Consensus 366 ~~~lRi~~~-~~~~~~~i~~~l~~l~~~l~~~ 396 (400)
T PTZ00125 366 DNIIRFAPP-LVITKEQLDQALEIIKKVLKSF 396 (400)
T ss_pred CCEEEEECC-ccCCHHHHHHHHHHHHHHHHHH
Confidence 468999985 5789999999999998876655
No 158
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=95.19 E-value=0.16 Score=46.65 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=23.7
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCC
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHS 47 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~ 47 (218)
.+||.+++++|||+++|. +|+++.+++
T Consensus 277 ~GaDiv~fSg~K~LgGp~-~G~i~g~~~ 303 (454)
T TIGR00474 277 AGVDLVTFSGDKLLGGPQ-AGIIVGKKE 303 (454)
T ss_pred cCCCEEEecCccccCCCe-EEEEEECHH
Confidence 469999999999999995 899998865
No 159
>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]
Probab=95.19 E-value=0.11 Score=44.90 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=87.3
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
.+.+||+++=+-|-|++|.|+ ++|-+++.... +..+. .++.|+-|-.++=.-+
T Consensus 213 ~~~fDSVsiCLSKglgAPVGS--ViVG~k~FI~k-----A~~~R--------------------KalGGGmRQsGvLaaa 265 (384)
T KOG1368|consen 213 CSAFDSVSICLSKGLGAPVGS--VIVGSKDFIDK-----ARHFR--------------------KALGGGMRQSGVLAAA 265 (384)
T ss_pred HHhhhhhhhhhhccCCCCccc--EEEccHHHHHH-----HHHHH--------------------HHhcCchhHHHHHHHH
Confidence 356899999999999999875 34444433321 11111 1233332222211111
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCceeEEEEecCCC--c-chHHHhhc--eeecceEECCEE
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP-RKCALVCFRLKPKR--E-SDGSELNQ--LSLTQATLGGVY 172 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-~~~~iV~Fr~~~~~--~-~~~~~Ln~--~~vs~~~~~g~~ 172 (218)
+|-.+- +.+ ..+++..+.|..+++.+...+++++-.+ .+.++|...+.... . +..+.+.+ +.+.. ....
T Consensus 266 aLval~-~~~-~~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~---~~s~ 340 (384)
T KOG1368|consen 266 ALVALD-ENV-PLLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQARLTAEELCKFLEKNGILLMG---GASR 340 (384)
T ss_pred HHHHhh-cch-HHHHHHHHHHHHHHHHhccccceeeecchhhcceeeeecccccCCHHHHHHHHHHCCeEEee---cccc
Confidence 211121 122 2667777899999999998877988776 68888887664332 1 33455554 22221 1122
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHH
Q 041549 173 VIRCSIGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 173 ~lR~~~~n~~tt~~di~~l~~~l~~ 197 (218)
-+|+++ |+..+.++++.++..+.+
T Consensus 341 r~Rivl-h~Qvt~~~ve~~~~~~~k 364 (384)
T KOG1368|consen 341 RIRIVL-HHQVTDEDVEYVKSVLSK 364 (384)
T ss_pred ceEEEE-EEecCHHHHHHHHHHHHH
Confidence 399998 579999999999998853
No 160
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=94.99 E-value=0.14 Score=45.55 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=43.0
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC------------------CCceeEEEEecCCC
Q 041549 102 KHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP------------------RKCALVCFRLKPKR 151 (218)
Q Consensus 102 ~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~------------------~~~~iV~Fr~~~~~ 151 (218)
..|.|.+.-+++++++.|..+++.|+++|.+.-++- ...++.+|..++..
T Consensus 284 lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~kyl~~g~g~vltF~~kgg~ 351 (426)
T COG2873 284 LQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKKYLPKGAGAVLTFGVKGGY 351 (426)
T ss_pred HhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHhhccCCCceEEEEEecChH
Confidence 469999999999999999999999999999988752 14578999998763
No 161
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=94.91 E-value=0.13 Score=45.51 Aligned_cols=163 Identities=12% Similarity=0.060 Sum_probs=95.5
Q ss_pred CCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcC-Cc---ccccccCCCCCCCCCCCCccCCcCccccCCCCCch
Q 041549 18 GVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQST-KS---DIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKA 93 (218)
Q Consensus 18 gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~-~~---~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~a 93 (218)
.+++-|-|.+.++|-++ |-|.+++++|+..+ .+.-+. -| .|..+...+ +.+|. + .-
T Consensus 187 Dvsk~dviyagaQKnlG-paGltvvIvr~~~l-~r~~~~~~P~if~y~~~~~~~--------s~yNT----P------pt 246 (365)
T COG1932 187 DVSKYDVIYAGAQKNLG-PAGLTVVIVRPDLL-ERAESYTLPSIFDYLTHADNG--------SMYNT----P------PT 246 (365)
T ss_pred ChhHcceEEEehhhccC-ccceEEEEEcHHHH-hcccccCCchHhhchhhhccC--------CccCC----c------HH
Confidence 37788999999999875 77899999998854 333221 12 232222111 11211 1 11
Q ss_pred hHHHH---HHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-c-CC-CceeEEEEecCCCc--chHHHhhc-eee
Q 041549 94 LKLWT---VIRKH-GYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-E-PR-KCALVCFRLKPKRE--SDGSELNQ-LSL 163 (218)
Q Consensus 94 l~~w~---~l~~~-G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~-~~-~~~iV~Fr~~~~~~--~~~~~Ln~-~~v 163 (218)
+.+|+ .++.+ ...|++++.++..+-++.|++.+++.+-+.-. . .. ....|||...+.+- .-+.++.+ ..+
T Consensus 247 fa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mnV~f~~~~~~ld~~fv~eae~~gl~ 326 (365)
T COG1932 247 FAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRMNVTFTLVDAELDKGFVAEAEAAGLI 326 (365)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCccccccchhhccceeEEEEcCcHHHHHHHHHHHHHcCCc
Confidence 22332 23433 45678888888889999999999997322222 2 22 34578999874321 11222222 222
Q ss_pred cceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 164 TQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 164 s~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
.....+-..-+|+++- .....++++.|++-++...++
T Consensus 327 ~lkGhr~vgGmRasiy-nA~~~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 327 YLKGHRSVGGLRASIY-NAVPLEDVEALTDFMDWFEET 363 (365)
T ss_pred eeccccCCCceeeeee-cCCCHHHHHHHHHHHHHHHHh
Confidence 2111121223999986 489999999999999887554
No 162
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=94.89 E-value=1 Score=40.13 Aligned_cols=84 Identities=14% Similarity=0.106 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEec--CCCceeEEEEecCCC--c-chHHHhhc--eeecceEECCEEEEEEecCCCCC
Q 041549 111 HIRSDVNMAKRFEAMVAKDERFETVE--PRKCALVCFRLKPKR--E-SDGSELNQ--LSLTQATLGGVYVIRCSIGTTLT 183 (218)
Q Consensus 111 ~i~~~~~la~~l~~~L~~~~~~el~~--~~~~~iV~Fr~~~~~--~-~~~~~Ln~--~~vs~~~~~g~~~lR~~~~n~~t 183 (218)
.+++..++++++.+.|++.. +..+. .+...++.|.+.+.. . +..+.|.+ +++.. .+..+||++++ ..+
T Consensus 309 ~~~~~~~~~~~l~~~L~~~~-~~~~~~~~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~---~~~~~lR~~p~-~~~ 383 (401)
T PRK00854 309 MIENAAEMGAYFLEGLRSIR-SNIVREVRGRGLMLAVELEPEAGGARQYCEALKERGLLAKD---THDHTIRLAPP-LVI 383 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhc-cCceEEEeccceEEEEEEecCchhHHHHHHHHHHCCeEEec---CCCCEEEEeCC-ccc
Confidence 34455578899999998863 22221 244556666554331 1 12233333 33322 23468999984 688
Q ss_pred cHHHHHHHHHHHHHHH
Q 041549 184 QDRHIDDLRKLIQEKA 199 (218)
Q Consensus 184 t~~di~~l~~~l~~~~ 199 (218)
+++||+++++.|++..
T Consensus 384 t~e~i~~~i~~l~~~l 399 (401)
T PRK00854 384 TREQVDWALEQIAKVL 399 (401)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998753
No 163
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=94.65 E-value=1.2 Score=40.45 Aligned_cols=106 Identities=8% Similarity=0.092 Sum_probs=59.0
Q ss_pred HHH-HHhcHHHHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCC-CceeEEEEecCCCc--chHHH-hhc-eeecceE
Q 041549 98 TVI-RKHGYSGLMYHIRSDVNMAKRFEAMVAK----DERFETVEPR-KCALVCFRLKPKRE--SDGSE-LNQ-LSLTQAT 167 (218)
Q Consensus 98 ~~l-~~~G~~g~~~~i~~~~~la~~l~~~L~~----~~~~el~~~~-~~~iV~Fr~~~~~~--~~~~~-Ln~-~~vs~~~ 167 (218)
.++ ..+..+.+.++++ ++.++|.+.|++ .|.+ +...+ ...++.+.+.+... ..... +++ .++.+..
T Consensus 309 a~l~~~~~~~~l~~~~~---~~g~~l~~~l~~l~~~~~~~-~~~vrg~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~~~~ 384 (425)
T PRK09264 309 AALEEYWSDDAFEKEVK---AKGELVRERLEEIAAKYPGL-GAEVRGRGMMQGIDFGDGELAGKIAAEAFENGLIIETSG 384 (425)
T ss_pred HHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHhCCCc-eecceecccEEEEEecChHHHHHHHHHHHHCCCEEeccC
Confidence 444 3344445555554 566677666654 3322 11112 23344665543211 11122 223 3443321
Q ss_pred ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhhcCCC
Q 041549 168 LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLLQEPE 209 (218)
Q Consensus 168 ~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~~~~~ 209 (218)
. +...||+++. ...|++||+++++.|.+...++..+.+++
T Consensus 385 ~-~~~~lr~~p~-l~~t~~ei~~~~~~l~~~l~~~~~~~~~~ 424 (425)
T PRK09264 385 P-EDEVVKLLPP-LTIDEEELEEGLDILEEAVAEVLAEEESK 424 (425)
T ss_pred C-CCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence 1 1257999984 68889999999999999998887766654
No 164
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=94.62 E-value=0.016 Score=49.66 Aligned_cols=28 Identities=25% Similarity=0.135 Sum_probs=25.3
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCC
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHS 47 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~ 47 (218)
.++|.++.++||++.+|-++|++++++.
T Consensus 209 ~~~div~~S~hK~l~g~~~~~~l~~~~~ 236 (294)
T cd00615 209 AGADIVVQSTHKTLPALTQGSMIHVKGD 236 (294)
T ss_pred cCCcEEEEchhcccchHhHHHHHHhCCC
Confidence 4799999999999999999999998876
No 165
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=94.61 E-value=0.66 Score=41.87 Aligned_cols=148 Identities=7% Similarity=0.061 Sum_probs=79.5
Q ss_pred CCCCCCeeeecccccCCC-ccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHH
Q 041549 18 GVELADSVSLNPHKWFLT-NMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKL 96 (218)
Q Consensus 18 gi~~aDSi~~d~HK~l~~-P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~ 96 (218)
|+ ..|-+++. |++.. -+..|+++++++. +.+.. . ... .+|+ + -+......
T Consensus 253 ~v-~PDi~~~~--K~lg~~G~pigav~~~~~~---~~~~~--~--~~~----------------~T~~--g-npl~~aaa 303 (412)
T TIGR02407 253 GI-EPDIVCLS--KSISGYGLPLALTLIKPEL---DVWKP--G--EHN----------------GTFR--G-NNLAFVTA 303 (412)
T ss_pred CC-CCCEEEec--hhccCCccceeEEEEchhh---hccCC--C--ccC----------------CCCC--c-cHHHHHHH
Confidence 44 46767765 99886 6889999997652 22210 0 000 0111 0 00011123
Q ss_pred HHHHHH-hcHHHHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCC-CceeEEEEecCCCc--chHHH-hhc-eeecce
Q 041549 97 WTVIRK-HGYSGLMYHIRSDVNMAKRFEAMVAK----DERFETVEPR-KCALVCFRLKPKRE--SDGSE-LNQ-LSLTQA 166 (218)
Q Consensus 97 w~~l~~-~G~~g~~~~i~~~~~la~~l~~~L~~----~~~~el~~~~-~~~iV~Fr~~~~~~--~~~~~-Ln~-~~vs~~ 166 (218)
-+++.. +..+.+.++++ ++.+++.+.+++ .|++. ...+ ...++.+.+.+... ..... +++ .++...
T Consensus 304 ~a~l~~~i~~~~l~~~~~---~~g~~l~~~l~~l~~~~~~~~-~~vrg~Gl~~~l~l~~~~~~~~~~~~~~~~Gv~v~~~ 379 (412)
T TIGR02407 304 TAALEYYWSDDAFEKAVQ---RKSEIIQERLDRIVAEYPELI-KQVRGRGLMQGIECGDGDLAGKIAKAAFENGLIIETS 379 (412)
T ss_pred HHHHHHHhcccHHHHHHH---HHHHHHHHHHHHHHhhCCCce-EeeecceeEEEEEecChHHHHHHHHHHHHCCCEEecc
Confidence 445663 66666766665 566666666653 44332 2222 33344666643211 11222 233 344332
Q ss_pred EECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHH
Q 041549 167 TLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 167 ~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~ 200 (218)
. .+...||+++. ...+++|++++++.+++...
T Consensus 380 ~-~~~~~lr~~p~-l~~t~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 380 G-PNDEVIKLLPP-LTIDEETLQQGLDILEQAVE 411 (412)
T ss_pred C-CCCCEEEEECC-CCCCHHHHHHHHHHHHHHHh
Confidence 1 12357999994 78999999999999988754
No 166
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=94.59 E-value=0.2 Score=43.94 Aligned_cols=86 Identities=12% Similarity=0.044 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc-e-eecce-EE-CCEEEEEEecCC
Q 041549 105 YSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ-L-SLTQA-TL-GGVYVIRCSIGT 180 (218)
Q Consensus 105 ~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~-~-~vs~~-~~-~g~~~lR~~~~n 180 (218)
.+-+++.++...+..+++.+.|+++++++.+.|+..+.+.+++.+ ..+..+.|.+ . .+... .. +...++|++++
T Consensus 261 ~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps~~nfi~~~~~~-~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~- 338 (351)
T PRK01688 261 IAAMRERVAEINANRQWLIAALKEIPCVEQVFDSETNYILARFTA-SSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG- 338 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCC-HHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC-
Confidence 345666677666778899999999888866667777777777642 1223344444 2 23211 11 12458999986
Q ss_pred CCCcHHHHHHHHHHH
Q 041549 181 TLTQDRHIDDLRKLI 195 (218)
Q Consensus 181 ~~tt~~di~~l~~~l 195 (218)
+.++++.+++.|
T Consensus 339 ---~~~e~~~l~~al 350 (351)
T PRK01688 339 ---TREECQRVIDAL 350 (351)
T ss_pred ---CHHHHHHHHHhh
Confidence 469999999887
No 167
>PRK08363 alanine aminotransferase; Validated
Probab=94.39 E-value=1.4 Score=39.13 Aligned_cols=93 Identities=10% Similarity=0.028 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEE-EecCC---C-cchHHH-hhc--eeecceE-E--CCEEE
Q 041549 105 YSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCF-RLKPK---R-ESDGSE-LNQ--LSLTQAT-L--GGVYV 173 (218)
Q Consensus 105 ~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~F-r~~~~---~-~~~~~~-Ln~--~~vs~~~-~--~g~~~ 173 (218)
.+-+++..+...+..+++.+.|++++++++ .+|..+.+.| ++++. + .+.+.. +.+ +.+.+.. . .+..+
T Consensus 291 ~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~-~~p~g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~ 369 (398)
T PRK08363 291 MDYLEEYMKKLKERRDYIYKRLNEIPGIST-TKPQGAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYGAGH 369 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCEe-cCCCeEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCe
Confidence 344555555566777888899988888875 4567777776 55541 2 222333 333 3333221 1 23468
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 174 IRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 174 lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
+|+++.. +++++++.++.|.+...+
T Consensus 370 iRis~~~---~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 370 FRLVFLP---PVEILEEAMDRFEEFMRE 394 (398)
T ss_pred EEEEecC---CHHHHHHHHHHHHHHHHH
Confidence 9999853 478888888888876544
No 168
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=94.36 E-value=0.36 Score=42.33 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceE-ECCEEEEEEecCC
Q 041549 104 GYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQAT-LGGVYVIRCSIGT 180 (218)
Q Consensus 104 G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~-~~g~~~lR~~~~n 180 (218)
|.+.+++.++...+..+++.+.|++++++++. ++..+.+.+++++ ..+..+.+.+ +.+.... .....++|++++
T Consensus 261 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~~-~~~~~~~l~~~gv~v~~~~~~~~~~~lRis~~- 337 (354)
T PRK04635 261 GLARMKFQVLDLNAQGARLQAALSMYGGAKVL-EGNGNYVLAKFDD-VDAVFKALWDAGIVARAYKDPRLANCIRFSFS- 337 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCcEEEEECCC-HHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC-
Confidence 44556666666677778899999998777765 4555666666542 1222334444 2232111 112458999974
Q ss_pred CCCcHHHHHHHHHHHHHH
Q 041549 181 TLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 181 ~~tt~~di~~l~~~l~~~ 198 (218)
+.+|++++++.|++.
T Consensus 338 ---~~e~~~~l~~al~~~ 352 (354)
T PRK04635 338 ---NRAETDKLIGLIRNQ 352 (354)
T ss_pred ---CHHHHHHHHHHHHHh
Confidence 589999999999764
No 169
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=94.35 E-value=0.3 Score=44.03 Aligned_cols=99 Identities=19% Similarity=0.358 Sum_probs=66.6
Q ss_pred hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CC----------------CceeEEEEecCCCcchHH
Q 041549 94 LKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-PR----------------KCALVCFRLKPKRESDGS 156 (218)
Q Consensus 94 l~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~~----------------~~~iV~Fr~~~~~~~~~~ 156 (218)
...|+. ..|.+.+.-+++++.+.|..+++.|+++|.++-+. |. -.++++|.+.+. +.+.
T Consensus 249 ~dA~l~--lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~--~~~~ 324 (396)
T COG0626 249 FDAWLL--LRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE--EAAK 324 (396)
T ss_pred HHHHHH--HhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh--HHHH
Confidence 345654 45889999999999999999999999999987553 42 457999999875 3332
Q ss_pred -Hhhc--------------eeec------ceEE-------CC--EEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 157 -ELNQ--------------LSLT------QATL-------GG--VYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 157 -~Ln~--------------~~vs------~~~~-------~g--~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
.++. ..++ +..+ .| ...+|++++- ||++.|++.|++....
T Consensus 325 ~f~~~L~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl-----Ed~eDLi~Dl~~Al~~ 394 (396)
T COG0626 325 KFLDSLKLFKLAESLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGL-----EDVEDLIADLEQALAK 394 (396)
T ss_pred HHHHhCCccEEeccCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecC-----CCHHHHHHHHHHHHHh
Confidence 2232 0011 1010 11 4579999973 5777777777766543
No 170
>PRK08361 aspartate aminotransferase; Provisional
Probab=94.33 E-value=0.56 Score=41.66 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEE-EEecC--CCc-chHHHh-hc--eeecceE---ECCEEEEEE
Q 041549 107 GLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVC-FRLKP--KRE-SDGSEL-NQ--LSLTQAT---LGGVYVIRC 176 (218)
Q Consensus 107 g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~-Fr~~~--~~~-~~~~~L-n~--~~vs~~~---~~g~~~lR~ 176 (218)
.+++..+...+..+.+.+.|++.+++++.. |..+..+ .++++ .+. +..+.+ .+ +.+.+.. ..+..++|+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-p~g~~~~~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi 368 (391)
T PRK08361 290 AVEEMRKEYNERRKLVLKRLKEMPHIKVFE-PKGAFYVFANIDETGMSSEDFAEWLLEKARVVVIPGTAFGKAGEGYIRI 368 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCeecC-CCEEEEEEEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCEEEE
Confidence 455555555677788889999888887654 4555443 35543 122 223444 33 3343321 123468999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHHHH
Q 041549 177 SIGTTLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 177 ~~~n~~tt~~di~~l~~~l~~~~~ 200 (218)
+++. +++++++.++.|.+..+
T Consensus 369 ~~~~---~~~~l~~al~~l~~~l~ 389 (391)
T PRK08361 369 SYAT---SKEKLIEAMERMEKALE 389 (391)
T ss_pred EecC---CHHHHHHHHHHHHHHHh
Confidence 9863 46678887777776543
No 171
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=94.24 E-value=0.72 Score=40.41 Aligned_cols=86 Identities=10% Similarity=0.108 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-Cc-chHHHhhc--eeecceE-ECCEEEEEEecCCCC
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-RE-SDGSELNQ--LSLTQAT-LGGVYVIRCSIGTTL 182 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~~-~~~~~Ln~--~~vs~~~-~~g~~~lR~~~~n~~ 182 (218)
+++..++..++.+.+.+.|++. ++.+. ++..+++.+++.+. +. +..+.|.+ +.+.+.. .....++|++++
T Consensus 274 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~g~~~~i~~~~~~~~~~~~~~L~~~gI~v~~~~~~~~~~~iRis~~--- 348 (367)
T PRK02731 274 VEKSRALNAEGMAWLTEFLAEL-GLEYI-PSVGNFILVDFDDGKDAAEAYQALLKRGVIVRPVAGYGLPNALRITIG--- 348 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCceEEEEECCCCCCHHHHHHHHHHCCEEEEeCCCCCCCCeEEEecC---
Confidence 4555556667788888999887 77765 56778888887432 22 22344443 3343321 111358999974
Q ss_pred CcHHHHHHHHHHHHHHH
Q 041549 183 TQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 183 tt~~di~~l~~~l~~~~ 199 (218)
+.++++.+++.|+++.
T Consensus 349 -~~~e~~~l~~aL~~~~ 364 (367)
T PRK02731 349 -TEEENRRFLAALKEFL 364 (367)
T ss_pred -CHHHHHHHHHHHHHHH
Confidence 5789999999998864
No 172
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=94.02 E-value=0.29 Score=44.47 Aligned_cols=123 Identities=18% Similarity=0.195 Sum_probs=62.5
Q ss_pred Cccccccc-CccccccccCCCCCC-------eeeecccccCCCccceeEEEEeCCc-chhhhhcCCcccc-cccCCCCCC
Q 041549 1 QAYRSACI-CPEFRHYLNGVELAD-------SVSLNPHKWFLTNMDCGCLWVKHSS-FLVDSQSTKSDIM-RNRSPASST 70 (218)
Q Consensus 1 ~A~Gg~~~-~~~~r~~~~gi~~aD-------Si~~d~HK~l~~P~~~g~l~~r~~~-~l~~~~~~~~~yl-~~~~~~~~~ 70 (218)
.|||+.+- .+-.+..+ --+|| -++-+.||.|.+--.+++|.+++.. .-.+.+.. .|. ...++
T Consensus 204 EAhGah~~F~~lp~~a~--~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~--~l~~~~TTS---- 275 (417)
T PF01276_consen 204 EAHGAHFGFHPLPRSAL--ALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNE--ALSMHQTTS---- 275 (417)
T ss_dssp -TT-TTGGCSGGGTTCS--STTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHH--HHHHHS-SS----
T ss_pred ccccccccCCCCccchh--hccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHH--HHHHHcCCC----
Confidence 48998544 44444433 24577 9999999999999999999999986 32222221 111 11111
Q ss_pred CCCCCCccCCcCccccCCCCCchhHHHHH-H-HHhcHHHHHHHHHHHHHHHHHHHHHH---hcCCCeEEecCCCcee-EE
Q 041549 71 STNVAPVIDYKDWQIALSRRFKALKLWTV-I-RKHGYSGLMYHIRSDVNMAKRFEAMV---AKDERFETVEPRKCAL-VC 144 (218)
Q Consensus 71 ~~~~~~~~~~~~~tl~~sR~~~al~~w~~-l-~~~G~~g~~~~i~~~~~la~~l~~~L---~~~~~~el~~~~~~~i-V~ 144 (218)
++ |-+- .++..-.. | ...|.+-+++ .+++++.++++| .+++.|+++.|...+- -|
T Consensus 276 -------PS---Y~lm-----ASlD~a~~~m~~~~G~~l~~~----~i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~ 336 (417)
T PF01276_consen 276 -------PS---YPLM-----ASLDVARAQMEEEEGRELLEE----AIELAEEFRKKINRLNDIWGFKVLGPEDVGGEGC 336 (417)
T ss_dssp ------------HHHH-----HHHHHHHHHHSHHHHHHHHHH----HHHHHHHHHHHHHHHCCT-SSEESS-SEECTCCG
T ss_pred -------hH---HHHH-----HHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHhcCCCceEecCCccccCCccc
Confidence 00 1110 12222211 1 1234444444 456777777777 7788899998643321 15
Q ss_pred EEecCC
Q 041549 145 FRLKPK 150 (218)
Q Consensus 145 Fr~~~~ 150 (218)
|.+.+.
T Consensus 337 ~~~~~~ 342 (417)
T PF01276_consen 337 WDLDPG 342 (417)
T ss_dssp CB--TT
T ss_pred cccCcc
Confidence 555443
No 173
>PRK12566 glycine dehydrogenase; Provisional
Probab=93.95 E-value=0.58 Score=46.58 Aligned_cols=163 Identities=13% Similarity=0.070 Sum_probs=96.8
Q ss_pred cCCCCCCeeeecccccCCCccc-----eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccC----
Q 041549 17 NGVELADSVSLNPHKWFLTNMD-----CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIAL---- 87 (218)
Q Consensus 17 ~gi~~aDSi~~d~HK~l~~P~~-----~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~---- 87 (218)
.|==+||-+ +.-++-+++|++ .|++-+|++ +.+.+.. ..++... +.. |..-+. .++|.
T Consensus 255 Pge~GADI~-vG~~Q~fGvp~~~GGP~ag~~a~~~~--~~R~~PG--RivG~s~-D~~------G~~a~~-l~LqtREQH 321 (954)
T PRK12566 255 PGELGADVV-LGSTQRFGVPMGYGGPHAAYFACRDD--YKRAMPG--RIIGVSR-DAR------GNTALR-MALQTREQH 321 (954)
T ss_pred hhhcCCcEE-eeCCCcCCCCCCCCCCCeeeeeehHH--HHhhCCC--Cccceee-cCC------CCeeee-hhhhHHHHH
Confidence 455678866 777777777665 678888775 2333322 2333221 111 222111 12332
Q ss_pred CCCCc-------hhHHH---HH--HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchH
Q 041549 88 SRRFK-------ALKLW---TV--IRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDG 155 (218)
Q Consensus 88 sR~~~-------al~~w---~~--l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~ 155 (218)
=||-+ +-.++ ++ +-++|.+|++++-+++...|.+|++.|.+ +|+++..++-+.-++++......+..
T Consensus 322 IRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~~~~~fF~~~~v~~~~~~~~~~ 400 (954)
T PRK12566 322 IRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEA-KGIKRLNRHFFDTLTLEVGGAQAAII 400 (954)
T ss_pred hhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh-cCCccccCCccceEEEEccCCHHHHH
Confidence 23322 11222 22 34679999999999999999999999999 79999988666777777621111111
Q ss_pred H-HhhceeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHH
Q 041549 156 S-ELNQLSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQ 196 (218)
Q Consensus 156 ~-~Ln~~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~ 196 (218)
. .+...+- -..+++ ..+.+++ ...++.+|++.+++.+.
T Consensus 401 ~~a~~~~~n-~r~~~~-~~~~~s~-de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 401 ESAEAARIN-LRILGR-GRLGVSL-DETCDEATVARLFDIFL 439 (954)
T ss_pred HHHHHCCCe-eEEeCC-CeEEEEe-CCCCCHHHHHHHHHHhc
Confidence 1 1222111 111222 3588888 57999999999999884
No 174
>PRK05764 aspartate aminotransferase; Provisional
Probab=93.89 E-value=1.1 Score=39.76 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCce-eEEEEecCCC-------cchHHHh-hc--eeecceE-ECCEEE
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCA-LVCFRLKPKR-------ESDGSEL-NQ--LSLTQAT-LGGVYV 173 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~-iV~Fr~~~~~-------~~~~~~L-n~--~~vs~~~-~~g~~~ 173 (218)
+-+.+..+...+..+.+.+.|++++++++.. |..+ .+.+.+.+.. .+....+ .+ +.+.+.. .....+
T Consensus 288 ~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~ 366 (393)
T PRK05764 288 DEVEEMRQAFEERRDLMVDGLNEIPGLECPK-PEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGAPGY 366 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCcccC-CCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCCCCE
Confidence 4445555556677888999999988888765 4444 3444444321 1222333 32 3333321 222468
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 174 IRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 174 lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
+|+++++ +++++++.++.|.+...+
T Consensus 367 vRis~~~---~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 367 VRLSYAT---SLEDLEEGLERIERFLES 391 (393)
T ss_pred EEEEecC---CHHHHHHHHHHHHHHHHh
Confidence 9999863 589999999999877653
No 175
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=93.64 E-value=0.5 Score=42.21 Aligned_cols=92 Identities=11% Similarity=0.071 Sum_probs=54.4
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec--CCCceeEEEEecCCCcchHHHhhc--eeecceEECCEEEE
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE--PRKCALVCFRLKPKRESDGSELNQ--LSLTQATLGGVYVI 174 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~--~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~~~g~~~l 174 (218)
+|+.+-.+++.++. .++.++|.+.|++. +...+. ++..+++.+.......+....|.+ .++.+ .+..+|
T Consensus 299 aL~~~~~~~l~~~~---~~~~~~l~~~L~~l-~~~~i~~~~~~g~~~~~~~~~~~~~~~~~l~~~Gv~~~~---~~~~~i 371 (396)
T PRK04073 299 ALEVLEEEKLPERS---LELGEYFKEQLKEI-DNPMIKEVRGRGLFIGVELNEPARPYCEALKEEGLLCKE---THETVI 371 (396)
T ss_pred HHHHHHhcCHHHHH---HHHHHHHHHHHHhh-cCCcccceecceEEEEEEecchHHHHHHHHHHCCeEEec---CCCCEE
Confidence 34443334444444 56889999998875 222222 234455666664322222334433 34432 234689
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHH
Q 041549 175 RCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 175 R~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
|+++ +...+++||+++++.|++.
T Consensus 372 Ri~p-~l~~t~e~i~~~~~~l~~~ 394 (396)
T PRK04073 372 RFAP-PLVITKEELDWAFEKIKAV 394 (396)
T ss_pred EEEC-CcccCHHHHHHHHHHHHHH
Confidence 9999 4688999999999999865
No 176
>PRK15029 arginine decarboxylase; Provisional
Probab=93.62 E-value=0.88 Score=44.44 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=35.6
Q ss_pred Cccccccc-CccccccccCC-------CCCC-eeeecccccCCCccceeEEEEeCC
Q 041549 1 QAYRSACI-CPEFRHYLNGV-------ELAD-SVSLNPHKWFLTNMDCGCLWVKHS 47 (218)
Q Consensus 1 ~A~Gg~~~-~~~~r~~~~gi-------~~aD-Si~~d~HK~l~~P~~~g~l~~r~~ 47 (218)
.|||+.+. .|.++.. ..+ .+|| .++-+.||.|.+-=.+++|.+++.
T Consensus 348 EAhGah~~F~~~~p~~-sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~ 402 (755)
T PRK15029 348 EAWYGYARFNPIYADH-YAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG 402 (755)
T ss_pred CccccccccCcccccc-ccccccccccCCCceEEEEchhhcccchhhhhhheeCCC
Confidence 59999554 4766532 233 5788 889999999999999999999765
No 177
>PRK07049 methionine gamma-lyase; Validated
Probab=93.56 E-value=0.63 Score=42.32 Aligned_cols=99 Identities=12% Similarity=0.176 Sum_probs=62.2
Q ss_pred CCCeeeecccccCCC-c-cceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLT-N-MDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~-P-~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|-+.-.+.|.+.+ | .-.|++. .++... +.+.....+++ .+ ...+..|+
T Consensus 231 g~divv~S~SK~~gG~~glr~G~vv-~~~~l~-~~l~~~~~~~g--------------------~~------ls~~~a~l 282 (427)
T PRK07049 231 GADLSVYSLTKYVGGHSDLVAGAVL-GRKALI-RQVRALRSAIG--------------------TQ------LDPHSCWM 282 (427)
T ss_pred CCCEEEEcCceeecCCCCcEEEEEE-CCHHHH-HHHHHHHHhcC--------------------CC------CCHHHHHH
Confidence 578889999999985 3 3455554 333322 22211000000 01 12455666
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CC------------------CceeEEEEecC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-PR------------------KCALVCFRLKP 149 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~~------------------~~~iV~Fr~~~ 149 (218)
.++ |.+.+..++++..+.++.+++.|+++|+++-+. |+ -.++++|.+++
T Consensus 283 ~~r--~L~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~ 350 (427)
T PRK07049 283 LGR--SLETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKG 350 (427)
T ss_pred HHc--CCChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcC
Confidence 554 446788899999999999999999999986543 31 14599999975
No 178
>PLN02955 8-amino-7-oxononanoate synthase
Probab=93.38 E-value=0.66 Score=42.89 Aligned_cols=83 Identities=8% Similarity=0.113 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc--chHHHhhc--eeec----ceEECCEEEEEEecCCCCC
Q 041549 112 IRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE--SDGSELNQ--LSLT----QATLGGVYVIRCSIGTTLT 183 (218)
Q Consensus 112 i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~--~~~~~Ln~--~~vs----~~~~~g~~~lR~~~~n~~t 183 (218)
.++..++.++|.+.+ ++++ .++|+.....+... +..++|.+ .+++ +++-.|..-||++++ ...
T Consensus 373 r~~L~~n~~~fr~~~----G~~~----~sPI~pI~ig~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~ls-A~H 443 (476)
T PLN02955 373 RKAIWERVKEFKALS----GVDI----SSPIISLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLS-AAH 443 (476)
T ss_pred HHHHHHHHHHHHHhc----CCCC----CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeC-CCC
Confidence 344456777887642 5542 47888877754321 12344544 3333 333356567999984 799
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q 041549 184 QDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 184 t~~di~~l~~~l~~~~~~~~ 203 (218)
|++||+.+++.|.++.+.+-
T Consensus 444 t~edId~lv~~L~~~~~~~~ 463 (476)
T PLN02955 444 TTEDVKKLITALSSCLDFDN 463 (476)
T ss_pred CHHHHHHHHHHHHHHHhhhc
Confidence 99999999999998865543
No 179
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=93.14 E-value=2.5 Score=38.64 Aligned_cols=156 Identities=13% Similarity=0.161 Sum_probs=84.7
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHH
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTV 99 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~ 99 (218)
..+|++++.+||-+.+|.| |++..+++... ..... +..... + +.++ |+-..+-+. +
T Consensus 224 s~sd~~~mS~~K~~~~~~G-G~i~~~d~~l~-~~~~~---~~~~~~----------~---~~~~---gG~~~r~~~---A 279 (431)
T cd00617 224 SYADGCTMSAKKDGLVNIG-GFLALRDDELY-EEARQ---RVVLYE----------G---FVTY---GGMAGRDME---A 279 (431)
T ss_pred ccCCEEEEEeecCCCCccc-eEEEeCcHHHH-HHHHH---hccccC----------C---cccc---ccccHHHHH---H
Confidence 4799999999999999883 67777775443 23221 111100 0 0011 110111111 1
Q ss_pred HHHhcHHHH--HHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC---------Cc-chHHHh-hceeecce
Q 041549 100 IRKHGYSGL--MYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK---------RE-SDGSEL-NQLSLTQA 166 (218)
Q Consensus 100 l~~~G~~g~--~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~---------~~-~~~~~L-n~~~vs~~ 166 (218)
+ ..|.++. .+.+++.++.+++|.+.|++. |+.+..|.....|-...... +. +....| .+.-|...
T Consensus 280 ~-A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~-G~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~ 357 (431)
T cd00617 280 L-AQGLREAVEEDYLRHRVEQVRYLGDRLDEA-GVPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAV 357 (431)
T ss_pred H-HHHHHhcccHHHHHHHHHHHHHHHHHHHHC-CCCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEE
Confidence 1 2222221 345666667889999999997 89888765555555443311 01 112222 22111000
Q ss_pred E-------E---C------CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 167 T-------L---G------GVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 167 ~-------~---~------g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
. . . ....+|+.+-----|.+|+|.+.+.|..+.++
T Consensus 358 ~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~ 408 (431)
T cd00617 358 ELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYER 408 (431)
T ss_pred eecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhh
Confidence 0 0 1 13579999854456899999999999888655
No 180
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=92.97 E-value=2.4 Score=37.18 Aligned_cols=142 Identities=11% Similarity=0.039 Sum_probs=76.8
Q ss_pred CeeeecccccCC-CccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHHHH
Q 041549 23 DSVSLNPHKWFL-TNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIR 101 (218)
Q Consensus 23 DSi~~d~HK~l~-~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~l~ 101 (218)
+-+..+++|++. .-.-+|+++..++..+ +.+.. +. . .++. ..+...++..
T Consensus 204 ~i~~~S~SK~~~~~G~RiG~~v~~~~~~~-~~l~~---~~---~----------------~~~~------~~~~~~~a~~ 254 (356)
T PRK08056 204 LWVLRSLTKFYAIPGLRLGYLVNSDDAAV-ARMRR---QQ---M----------------PWSI------NAFAALAGEV 254 (356)
T ss_pred EEEEEechhhccCcchhheeeecCCHHHH-HHHHH---hC---C----------------CCch------hHHHHHHHHH
Confidence 467789999998 5577888876554332 22221 00 0 0111 0111122111
Q ss_pred Hh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceE-EC--CEEEEE
Q 041549 102 KH-GYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQAT-LG--GVYVIR 175 (218)
Q Consensus 102 ~~-G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~-~~--g~~~lR 175 (218)
.+ +.+-+++..+...+..+++.+.|++++++++. ++..+.+-++....+.+....|.+ +.+.+.. .. +..++|
T Consensus 255 ~l~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iR 333 (356)
T PRK08056 255 ILQDRAYQQATWQWLAEEGARFYQALCALPLLTVW-PGRANYLFLRCERPDIDLQRALLTQRILIRSCANYPGLDSRYYR 333 (356)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEc-CCCCcEEEEEcCCChHHHHHHHHHCCeEEEECCCCCCCCCCEEE
Confidence 22 22333444455567788899999988888765 455555555554322223344433 2332211 11 235899
Q ss_pred EecCCCCCcHHHHHHHHHHHHHH
Q 041549 176 CSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 176 ~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
+++. +.++.+.+++.|+++
T Consensus 334 is~~----~~~~~~~l~~~l~~~ 352 (356)
T PRK08056 334 VAIR----SAAENERLLAALRNV 352 (356)
T ss_pred EEEc----CHHHHHHHHHHHHHH
Confidence 9985 467888888888765
No 181
>PRK05967 cystathionine beta-lyase; Provisional
Probab=92.96 E-value=0.65 Score=41.90 Aligned_cols=56 Identities=11% Similarity=0.168 Sum_probs=43.6
Q ss_pred hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cCC----------------CceeEEEEecCC
Q 041549 93 ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-EPR----------------KCALVCFRLKPK 150 (218)
Q Consensus 93 al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~~~----------------~~~iV~Fr~~~~ 150 (218)
....|+. ..|.+.+..++++..+.|..+++.|+++|.++-+ .|. -.++++|.+++.
T Consensus 246 p~da~l~--~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~ 318 (395)
T PRK05967 246 PDDTYQI--LRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAG 318 (395)
T ss_pred HHHHHHH--HcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCC
Confidence 3455643 5688999999999999999999999999998544 331 247999999743
No 182
>PRK13578 ornithine decarboxylase; Provisional
Probab=92.95 E-value=0.73 Score=44.68 Aligned_cols=48 Identities=15% Similarity=-0.037 Sum_probs=36.5
Q ss_pred Cccccccc-Ccccccc--ccCCCCCC----eeeecccccCCCccceeEEEEeCCc
Q 041549 1 QAYRSACI-CPEFRHY--LNGVELAD----SVSLNPHKWFLTNMDCGCLWVKHSS 48 (218)
Q Consensus 1 ~A~Gg~~~-~~~~r~~--~~gi~~aD----Si~~d~HK~l~~P~~~g~l~~r~~~ 48 (218)
.|||+.+. .|.++.+ ...=.+|| .++=+.||.|.+==.+|+|.+++..
T Consensus 318 EAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~ 372 (720)
T PRK13578 318 SAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNH 372 (720)
T ss_pred CcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcc
Confidence 59999654 4765432 22336889 9999999999999999999987753
No 183
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=92.90 E-value=0.83 Score=39.96 Aligned_cols=86 Identities=10% Similarity=0.061 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecce-EE--CCEEEEEEecCCC
Q 041549 107 GLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQA-TL--GGVYVIRCSIGTT 181 (218)
Q Consensus 107 g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~-~~--~g~~~lR~~~~n~ 181 (218)
.+++.+++..+..+++.+.|++.+++.+ .++..+.+.+++. .+.+....+.+ +.+.+. .. .+..++|++++
T Consensus 265 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~-- 340 (356)
T PRK04870 265 VLDAQAAQLRAERTRLAAALAALPGVTV-FPSAANFILVRVP-DAAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTVG-- 340 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcEE-CCCCCeEEEEECC-CHHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeCC--
Confidence 4667777777888899999999888875 4566777777765 22223344444 333321 11 12468999986
Q ss_pred CCcHHHHHHHHHHHHHH
Q 041549 182 LTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 182 ~tt~~di~~l~~~l~~~ 198 (218)
+.++++.|+++|+++
T Consensus 341 --~~~~~~~l~~al~~~ 355 (356)
T PRK04870 341 --TPEENAQFLAALKAA 355 (356)
T ss_pred --CHHHHHHHHHHHHHh
Confidence 578999999998764
No 184
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=92.80 E-value=0.72 Score=40.69 Aligned_cols=82 Identities=13% Similarity=0.134 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhc----CCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceEECCEEEEEEecCCCCCcH
Q 041549 112 IRSDVNMAKRFEAMVAK----DERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQATLGGVYVIRCSIGTTLTQD 185 (218)
Q Consensus 112 i~~~~~la~~l~~~L~~----~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~~~g~~~lR~~~~n~~tt~ 185 (218)
+++..++.+++++.|++ .+.+.-+. +...++.+.+.+......+.+.+ .++.+ .+..+||+++. ...++
T Consensus 289 ~~~~~~~~~~l~~~L~~~~~~~~~~~~v~-~~g~~~~i~~~~~~~~~~~~l~~~gv~v~~---~g~~~lRi~p~-~~~~~ 363 (377)
T PRK02936 289 LEEVQEKGEYFLQKLQEELEHLECVKNIR-GKGLMIGIECTEEVAPVIEQLREEGLLVLS---AGPNVIRLLPP-LVVTK 363 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeEe-ecceEEEEEecchHHHHHHHHHHCCeEEec---CCCCEEEEECC-cccCH
Confidence 34444666666666665 33332222 23345666664321122233333 34443 34468999984 57889
Q ss_pred HHHHHHHHHHHHH
Q 041549 186 RHIDDLRKLIQEK 198 (218)
Q Consensus 186 ~di~~l~~~l~~~ 198 (218)
++|+++++.|++.
T Consensus 364 ~~i~~~i~~l~~~ 376 (377)
T PRK02936 364 EELDQAVYLLKKV 376 (377)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 185
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=92.54 E-value=2.1 Score=38.11 Aligned_cols=102 Identities=15% Similarity=0.037 Sum_probs=60.5
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC-----ceeEEEEecCC----Cc-chHHHhhc------
Q 041549 97 WTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRK-----CALVCFRLKPK----RE-SDGSELNQ------ 160 (218)
Q Consensus 97 w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~-----~~iV~Fr~~~~----~~-~~~~~Ln~------ 160 (218)
-+++-..-.+++.+.+++..++++++.+.|++.+...+..+.. ..+.+|++.+. +. +..+.|.+
T Consensus 242 ~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~gI~~~ 321 (379)
T PRK11658 242 NAAIALVQLAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEERCGISRDALMEALKERGIGTG 321 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCccccCCHHHHHHHHHHCCCCCc
Confidence 3444445567889999999999999999999876332322211 24567776432 11 22334433
Q ss_pred eeecceE----E-------C-------CEEEEEEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 161 LSLTQAT----L-------G-------GVYVIRCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 161 ~~vs~~~----~-------~-------g~~~lR~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
.+..+.. + + ....|-+ ++++..+++|++.+++.|++..
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~l-P~~~~l~~~~~~~i~~~i~~~~ 377 (379)
T PRK11658 322 LHFRAAHTQKYYRERFPTLSLPNTEWNSERICSL-PLFPDMTDADVDRVITALQQIA 377 (379)
T ss_pred ccCcCcccChhhhccCCCCCChHHHHHHhCeEEc-cCCCCCCHHHHHHHHHHHHHHH
Confidence 1110000 0 0 1233554 3478999999999999998864
No 186
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=92.19 E-value=0.64 Score=42.46 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=43.3
Q ss_pred chhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC------------------CceeEEEEecC
Q 041549 92 KALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR------------------KCALVCFRLKP 149 (218)
Q Consensus 92 ~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~------------------~~~iV~Fr~~~ 149 (218)
..+..|+. ..|.+.+..++++..+.+.++++.|+++|.++.+.-| -.++++|.+++
T Consensus 275 sp~~a~l~--~rgL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~ 348 (432)
T PRK06702 275 SPFNAYIS--NIGLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKG 348 (432)
T ss_pred CHHHHHHH--HhccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecC
Confidence 34566654 4566789999999999999999999999998765421 13699999974
No 187
>PRK06225 aspartate aminotransferase; Provisional
Probab=92.15 E-value=2.5 Score=37.34 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCCeEEe-cCCCceeEEEEecCC--Cc-chHHHhhc--eeecceEE----CCEEEEEEecCCCCCcHH
Q 041549 117 NMAKRFEAMVAKDERFETV-EPRKCALVCFRLKPK--RE-SDGSELNQ--LSLTQATL----GGVYVIRCSIGTTLTQDR 186 (218)
Q Consensus 117 ~la~~l~~~L~~~~~~el~-~~~~~~iV~Fr~~~~--~~-~~~~~Ln~--~~vs~~~~----~g~~~lR~~~~n~~tt~~ 186 (218)
+..+.+.+.|++++++.+. .++..+++.+.+.+. +. +....|.+ +++.+... .+..++|+++.. +++
T Consensus 285 ~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~---~~e 361 (380)
T PRK06225 285 KNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAGIDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFSI---PRE 361 (380)
T ss_pred HHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccccCCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeCC---CHH
Confidence 4566777888887776543 345555666665432 22 22334433 34433211 234589999852 689
Q ss_pred HHHHHHHHHHHHHHHHH
Q 041549 187 HIDDLRKLIQEKADRLL 203 (218)
Q Consensus 187 di~~l~~~l~~~~~~~~ 203 (218)
+++++++.|++...++.
T Consensus 362 ~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 362 QVEVFCEEFPDVVETLR 378 (380)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999998877653
No 188
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=91.86 E-value=1.9 Score=37.44 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc-chHHHhhc--eeecceE-ECCEEEEEEecCCC
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE-SDGSELNQ--LSLTQAT-LGGVYVIRCSIGTT 181 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~-~~~~~Ln~--~~vs~~~-~~g~~~lR~~~~n~ 181 (218)
+.+++..++..+..+++.+.|++. ++++. ++..+++.++..+.+. +..+.|.+ +.+.... -....++|++++
T Consensus 260 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~~-- 335 (353)
T PRK05387 260 AYFEETRAKVIATRERLVEELEAL-GFEVL-PSKANFVFARHPSHDAAELAAKLRERGIIVRHFNKPRIDQFLRITIG-- 335 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCeEC-CCcCcEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCCCeEEEEeC--
Confidence 345666667778888999999987 78754 5556677676654332 22344544 2232110 012468999985
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 041549 182 LTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 182 ~tt~~di~~l~~~l~~~~ 199 (218)
+.++++++++.|+++.
T Consensus 336 --~~~~~~~~~~~L~~~~ 351 (353)
T PRK05387 336 --TDEEMEALVDALKEIL 351 (353)
T ss_pred --CHHHHHHHHHHHHHHh
Confidence 4689999999998763
No 189
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=91.77 E-value=3.1 Score=37.93 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=55.0
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEecC--CCceeEEEEecCC----CcchHH----H-hhc-ee
Q 041549 96 LWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDE-RFETVEP--RKCALVCFRLKPK----RESDGS----E-LNQ-LS 162 (218)
Q Consensus 96 ~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~-~~el~~~--~~~~iV~Fr~~~~----~~~~~~----~-Ln~-~~ 162 (218)
...+|+.+-. ++ +++..++.++|.+.|++.. .+.++.+ ....++.+.+.+. +.+... . +++ .+
T Consensus 329 a~a~L~~l~~-~~---~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil 404 (441)
T PRK05769 329 ALATLEELEE-GL---LENAQKLGEYLRKELKELKEKYEFIGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLL 404 (441)
T ss_pred HHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHhCCCeeeeecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcE
Confidence 3345555544 44 4444578888888886531 1222222 1223444444322 111111 1 223 33
Q ss_pred ecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 163 LTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 163 vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
+.+ .+...||+++. ...|++|||++++.+++...++
T Consensus 405 ~~~---~~~~~lr~~p~-l~~t~~~id~~~~~l~~~l~~~ 440 (441)
T PRK05769 405 LLG---AGKSAIRIIPP-LIITEEEADIGLEILEEAIKEL 440 (441)
T ss_pred Eec---CCCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 432 24467999985 5889999999999999887654
No 190
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=91.54 E-value=2.9 Score=40.61 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=35.7
Q ss_pred Cccccccc-Ccccc--ccccCCCCCCee---eecccccCCCccceeEEEEeCC
Q 041549 1 QAYRSACI-CPEFR--HYLNGVELADSV---SLNPHKWFLTNMDCGCLWVKHS 47 (218)
Q Consensus 1 ~A~Gg~~~-~~~~r--~~~~gi~~aDSi---~~d~HK~l~~P~~~g~l~~r~~ 47 (218)
.|||+.+. .|.++ .-+.+...+|.+ +-+.||.|.+-=.+|++.++..
T Consensus 331 EAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~ 383 (713)
T PRK15399 331 SAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGE 383 (713)
T ss_pred ccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCC
Confidence 59999554 47555 333343468888 9999999999999999999764
No 191
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=91.53 E-value=2.6 Score=36.73 Aligned_cols=157 Identities=16% Similarity=0.125 Sum_probs=90.9
Q ss_pred ccccCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCC-cccccccCCCCCCCCCCCCccCCcCccccCCCCCc
Q 041549 14 HYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTK-SDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFK 92 (218)
Q Consensus 14 ~~~~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~-~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~ 92 (218)
..+.-+.++|-+.-..-|-+++..| | |+--+..+.+.+... -+|++..+-. .+==+-
T Consensus 246 E~~~vm~~vdiinsTLgKAlGga~G-G--yttgp~~li~llrqr~RpylFSnslp-------------------pavV~~ 303 (417)
T KOG1359|consen 246 EEFGVMGDVDIINSTLGKALGGASG-G--YTTGPKPLISLLRQRSRPYLFSNSLP-------------------PAVVGM 303 (417)
T ss_pred HHhCCCCcceehhhhhhhhhcCCCC-C--CccCChhHHHHHHhcCCceeecCCCC-------------------hhhhhh
Confidence 4555578899999999999885433 1 222333334444443 3788765421 110113
Q ss_pred hhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcch----HHH-hhc-ee---e
Q 041549 93 ALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESD----GSE-LNQ-LS---L 163 (218)
Q Consensus 93 al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~----~~~-Ln~-~~---v 163 (218)
+.|++..+. +.. ..|.+.....+++++.... .||.+... ..+|+..-+- +.+. .+. |.+ .| +
T Consensus 304 a~ka~dllm--~s~---~~i~~~~a~~qrfr~~me~-aGftIsg~-~hPI~pv~lG--da~lA~~~ad~lLk~Gi~Vigf 374 (417)
T KOG1359|consen 304 AAKAYDLLM--VSS---KEIQSRQANTQRFREFMEA-AGFTISGA-SHPICPVMLG--DARLASKMADELLKRGIYVIGF 374 (417)
T ss_pred hHHHHHHHH--hhH---HHHHHHHHHHHHHHHHHHh-cCceecCC-CCCccceecc--cHHHHHHHHHHHHhcCceEEee
Confidence 566665432 222 2333444688888888776 59998863 2334333332 2222 223 333 23 2
Q ss_pred c-ceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 164 T-QATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 164 s-~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
+ ++.-+|..-||+.+. -..|++|||++++++.+.++.+
T Consensus 375 s~PvVP~gkariRVqiS-AaHt~edid~~i~Af~~vgr~~ 413 (417)
T KOG1359|consen 375 SYPVVPKGKARIRVQIS-AAHTEEDIDRLIEAFSEVGRFL 413 (417)
T ss_pred cCCcCCCCceEEEEEEe-hhcCHHHHHHHHHHHHHHHHhh
Confidence 2 333367777999985 5778999999999999987654
No 192
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=91.25 E-value=2.2 Score=38.03 Aligned_cols=95 Identities=11% Similarity=0.076 Sum_probs=56.1
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec--CCCceeEEEEecCCC----c-chHHHhhc--eeecce
Q 041549 96 LWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE--PRKCALVCFRLKPKR----E-SDGSELNQ--LSLTQA 166 (218)
Q Consensus 96 ~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~--~~~~~iV~Fr~~~~~----~-~~~~~Ln~--~~vs~~ 166 (218)
...+|+.+-.+++.+++ .+++++|.+.|++++ ..++. .+...+..+.+.+.. . +..+.+.+ .++.+
T Consensus 296 a~a~L~~i~~~~l~~~~---~~~~~~~~~~L~~l~-~~~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~- 370 (401)
T TIGR01885 296 AVAALEVLEEEKLAENA---EKLGEIFRDQLKKLP-KPIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKP- 370 (401)
T ss_pred HHHHHHHHHhccHHHHH---HHHHHHHHHHHHhcc-CCceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEe-
Confidence 33455555544555544 467999999999873 23332 123334444343221 1 11233333 44433
Q ss_pred EECCEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 167 TLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 167 ~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
.+...+|++++ ..++++||+++++.|++.
T Consensus 371 --~~~~~lRi~p~-l~~t~~~i~~~l~~l~~~ 399 (401)
T TIGR01885 371 --THGNIIRLAPP-LVITEEQLDEGLEIIKKV 399 (401)
T ss_pred --cCCCEEEEeCC-ccCCHHHHHHHHHHHHHH
Confidence 23467999985 689999999999999865
No 193
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=91.06 E-value=3.6 Score=36.33 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhc----CCCeEEecCCCceeEEEEecCCCcchHHHhh-c-eeecceEECCEEEEEEecCCCCCcHHH
Q 041549 114 SDVNMAKRFEAMVAK----DERFETVEPRKCALVCFRLKPKRESDGSELN-Q-LSLTQATLGGVYVIRCSIGTTLTQDRH 187 (218)
Q Consensus 114 ~~~~la~~l~~~L~~----~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln-~-~~vs~~~~~g~~~lR~~~~n~~tt~~d 187 (218)
+..++.+++.+.|.+ .|.+..+. ....++.+.+.....+....+. + +++.+ .+..++|+++. ...++++
T Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~i~~~~~~~~~~~~l~~~Gv~v~~---~~~~~lRi~~~-~~~~~~~ 380 (396)
T PRK02627 306 NAAEVGEYLRAKLRELLEKYPGIKEVR-GLGLMIGIELDRPAAEIVKKALEKGLLINV---TGDNVLRLLPP-LIISKEE 380 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeec-cCcEEEEEEecCcHHHHHHHHHHCCeEEee---cCCCEEEEECC-cccCHHH
Confidence 333555665555544 33322221 2344566666221112233333 3 34443 23467999984 5778999
Q ss_pred HHHHHHHHHHHHHHH
Q 041549 188 IDDLRKLIQEKADRL 202 (218)
Q Consensus 188 i~~l~~~l~~~~~~~ 202 (218)
|+++++.|.+...++
T Consensus 381 i~~~~~~l~~~l~~~ 395 (396)
T PRK02627 381 IDEAVDRLEEVLKEL 395 (396)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998876654
No 194
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=91.02 E-value=3.1 Score=37.16 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=55.5
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEecC--CCceeEEEEecCCCc----chHHHh-hc-eeecceE
Q 041549 97 WTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDE-RFETVEP--RKCALVCFRLKPKRE----SDGSEL-NQ-LSLTQAT 167 (218)
Q Consensus 97 w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~-~~el~~~--~~~~iV~Fr~~~~~~----~~~~~L-n~-~~vs~~~ 167 (218)
.++|+.+..+.+ +++..++.++|.+.|++.. .+.++.+ ....++.+.+.+... .....+ ++ .++..
T Consensus 289 ~a~l~~~~~~~l---~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~-- 363 (397)
T TIGR03246 289 GKVLDLVNTPEL---LAGVKQRHDLFVDGLEKINARYNVFSEIRGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALI-- 363 (397)
T ss_pred HHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHhcCCCeEeeecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEee--
Confidence 345555544444 4444578888888887742 1222221 223344444432111 112223 23 33332
Q ss_pred ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 168 LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 168 ~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
.|..++|+++. ...+++||+++++.|++...++
T Consensus 364 -~g~~~lR~~p~-~~~t~~~i~~~~~~l~~~l~~~ 396 (397)
T TIGR03246 364 -AGPNVVRFAPS-LVISDDDIDEGLARFERAIEQV 396 (397)
T ss_pred -cCCCEEEEeCC-CCCCHHHHHHHHHHHHHHHHHh
Confidence 24468999985 6889999999999998876543
No 195
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=91.01 E-value=1.7 Score=38.93 Aligned_cols=100 Identities=11% Similarity=0.091 Sum_probs=55.8
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEecCC-Cce-eEEEEecCCCc----chHHHhhc--eeecceEEC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDE-RFETVEPR-KCA-LVCFRLKPKRE----SDGSELNQ--LSLTQATLG 169 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~-~~el~~~~-~~~-iV~Fr~~~~~~----~~~~~Ln~--~~vs~~~~~ 169 (218)
+|+.+-.+.+ +++..++.++|.+.|++.. .+.++..+ ..+ ++.+.+.+... ...+.+.+ .++.. .
T Consensus 295 ~l~~l~~~~~---~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~---~ 368 (406)
T PRK12381 295 VLELINTPEM---LNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLI---A 368 (406)
T ss_pred HHHHHhhccH---HHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEee---C
Confidence 3444433333 4444578888888887641 22222222 222 34454433211 11233333 33432 2
Q ss_pred CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 041549 170 GVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLL 205 (218)
Q Consensus 170 g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~ 205 (218)
+...+|+++. ...+++||+++++.|++...++..+
T Consensus 369 g~~~lRl~p~-~~~t~~~i~~~~~~l~~~l~~~~~~ 403 (406)
T PRK12381 369 GPNVVRFAPA-LNISEEEITTGLDRFARACERFVSR 403 (406)
T ss_pred CCCEEEEeCC-ccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 4468999984 4688999999999999988776443
No 196
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=90.95 E-value=3.4 Score=36.12 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=55.8
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceE--ECCEEEEEE
Q 041549 101 RKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQAT--LGGVYVIRC 176 (218)
Q Consensus 101 ~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~--~~g~~~lR~ 176 (218)
..+-...++++++...+..+++.+.|++.+++++. ++..+.+..++.+ ..+..+.+.+ +.+.... .....++|+
T Consensus 254 ~~l~~~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~-~~~~~~~~i~~~~-~~~~~~~l~~~gV~v~~~~~~~~~~~~iRi 331 (351)
T PRK14807 254 KVLRTGVLKERVNYILNERERLIKELSKIPGIKVY-PSKTNFILVKFKD-ADYVYQGLLERGILVRDFSKVEGLEGALRI 331 (351)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC-cCCccEEEEEcCC-HHHHHHHHHHCCEEEEECCCCCCCCCeEEE
Confidence 33333456777777777888888999888888764 5555555555542 1222334433 3332211 122468999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHH
Q 041549 177 SIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 177 ~~~n~~tt~~di~~l~~~l~~~ 198 (218)
++++ .++.+.+++.|+++
T Consensus 332 s~~~----~~~~~~l~~~l~~~ 349 (351)
T PRK14807 332 TVSS----CEANDYLINGLKEL 349 (351)
T ss_pred EcCC----HHHHHHHHHHHHHh
Confidence 9863 67788888888764
No 197
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=90.89 E-value=4.3 Score=35.81 Aligned_cols=98 Identities=11% Similarity=0.073 Sum_probs=50.1
Q ss_pred HHHHHHHhcHHHHHHHHHH-HHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceEECCEE
Q 041549 96 LWTVIRKHGYSGLMYHIRS-DVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQATLGGVY 172 (218)
Q Consensus 96 ~w~~l~~~G~~g~~~~i~~-~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~~~g~~ 172 (218)
...+++.+..+++.+.++. ...+.+.+.+.+.+.+.+.-+. .....+.+.+.....+..+.+.+ .++.+ .+..
T Consensus 274 a~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~l~~~Gi~v~~---~~~~ 349 (375)
T PRK04260 274 ASATLDIMLTAGFLEQALENGNYLQEQLQKALQDKETVTTVR-GLGYMIGIETTADLSQLVEAARDKGLIVLT---AGTN 349 (375)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEe-ccceEEEEEecCcHHHHHHHHHhCCCEEec---CCCC
Confidence 3344555544555444432 2223333444444443332222 23444555553221122334333 44433 2446
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 173 VIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 173 ~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
.+|++++ ...+++||+++++.|++.
T Consensus 350 ~lR~~~~-~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 350 VIRLLPP-LTLTKEEIEQGIAILSEV 374 (375)
T ss_pred EEEEcCC-CccCHHHHHHHHHHHHHh
Confidence 7999985 578899999999998764
No 198
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=90.85 E-value=8.2 Score=34.61 Aligned_cols=147 Identities=12% Similarity=0.020 Sum_probs=80.0
Q ss_pred CCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHHH
Q 041549 21 LADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVI 100 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~l 100 (218)
..|-+++. |-+.+.++.|+++.+++-. .+ .+.+.. + +|+ + -+..+.....+|
T Consensus 240 ~PDi~t~g--K~lg~G~p~~av~~~~~i~---~~--~~~~~~-------------~-----T~~--g-~pl~~aaala~L 291 (395)
T PRK03715 240 EPDIMTLG--KGIGGGVPLAALLAKAEVA---VF--EAGDQG-------------G-----TYN--G-NPLMTAVGVAVI 291 (395)
T ss_pred CCceeeeh--hhhhCCcceEEEEEccccc---cc--cCCCcC-------------C-----CCC--C-CHHHHHHHHHHH
Confidence 36877764 8887768889998876531 11 111100 1 111 1 122233455566
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCCCceeEEEEecCCCc-chHHHhhc----eeecceEECCEE
Q 041549 101 RKHGYSGLMYHIRSDVNMAKRFEAMVAKD---ERFETVEPRKCALVCFRLKPKRE-SDGSELNQ----LSLTQATLGGVY 172 (218)
Q Consensus 101 ~~~G~~g~~~~i~~~~~la~~l~~~L~~~---~~~el~~~~~~~iV~Fr~~~~~~-~~~~~Ln~----~~vs~~~~~g~~ 172 (218)
..+-.+++.+ +..++.++|.+.|++. .++.-+. ....++.+-+.+... ...+...+ ..+... .+..
T Consensus 292 ~~l~~~~l~~---~~~~~g~~l~~~L~~l~~~~~i~~vr-G~Glm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~~--~~~~ 365 (395)
T PRK03715 292 SQLLAPGFLE---GVRARGEYLKEKLLELSEERGLEGER-GEGLLRALLLGKDIGPQIVEKARDMQPDGLLLNA--PRPN 365 (395)
T ss_pred HHHHhccHHH---HHHHHHHHHHHHHHHHhhcCCcCeEE-cceeEEEEEecCchHHHHHHHHHhccCCCEEEee--cCCC
Confidence 6665555444 4457888888888753 2332221 234455665543211 11111111 333211 1235
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 173 VIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 173 ~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
.||+++. ...|++|||++++.|++...++
T Consensus 366 ~lR~~p~-l~~t~~ei~~~~~~l~~~l~~~ 394 (395)
T PRK03715 366 LLRFMPA-LNVTTEEIDQMIAMLRSVLDKL 394 (395)
T ss_pred EEEEeCC-cccCHHHHHHHHHHHHHHHHhh
Confidence 7999994 7999999999999998887653
No 199
>PRK05939 hypothetical protein; Provisional
Probab=90.82 E-value=0.85 Score=41.07 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=42.5
Q ss_pred hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cC----------------CCceeEEEEecC
Q 041549 94 LKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-EP----------------RKCALVCFRLKP 149 (218)
Q Consensus 94 l~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~~----------------~~~~iV~Fr~~~ 149 (218)
...|+. ..|.+.+..+++++.+.|..+++.|+++|.++-+ .| .-.++++|.+++
T Consensus 251 ~~a~l~--~rgl~tl~~R~~~~~~na~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~ 321 (397)
T PRK05939 251 EAAHRI--AIGAETLALRVDRSCSNALALAQFLEAHPKVARVYYPGLASHPQHARATELFRHYGGLLSFELAD 321 (397)
T ss_pred HHHHHH--HcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCC
Confidence 344543 4789999999999999999999999999987544 33 135789999975
No 200
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=90.80 E-value=3 Score=36.44 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecce-EECCEEEEEEecCCCCCc
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQA-TLGGVYVIRCSIGTTLTQ 184 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~-~~~g~~~lR~~~~n~~tt 184 (218)
+++..+...+..+++.+.|++. ++.+. ++..+.+..+....+.+..+.|.+ +.+.+. ..+...++|++++ +
T Consensus 271 ~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~g~~i~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~----~ 344 (359)
T PRK03158 271 LKECVEKNAEGLEQYYAFCKEY-GLFYY-PSQTNFIFVDTGRDANELFEALLKKGYIVRSGAALGFPTGVRITIG----L 344 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCeeC-CCcCcEEEEECCCCHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC----C
Confidence 3344444456667777888876 77765 445555555553222233344433 333331 1223468999875 6
Q ss_pred HHHHHHHHHHHHHH
Q 041549 185 DRHIDDLRKLIQEK 198 (218)
Q Consensus 185 ~~di~~l~~~l~~~ 198 (218)
.++++.+++.|+++
T Consensus 345 ~~~~~~l~~al~~~ 358 (359)
T PRK03158 345 KEQNDKIIELLKEL 358 (359)
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999999874
No 201
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=90.54 E-value=2.7 Score=37.45 Aligned_cols=93 Identities=11% Similarity=-0.001 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecC----C--Cc-chHHHhh-c--eeecce-EECCEEEE
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKP----K--RE-SDGSELN-Q--LSLTQA-TLGGVYVI 174 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~----~--~~-~~~~~Ln-~--~~vs~~-~~~g~~~l 174 (218)
+-+++..+...+..+++.+.|++.+++....|.....+-.++.. . +. +....+. + +.+.+. ......++
T Consensus 296 ~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~~~~i 375 (401)
T TIGR01264 296 EYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEYPGFF 375 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCCCCeE
Confidence 34555566666677788899998877765555444455555432 1 11 2234443 3 334432 22234689
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 175 RCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 175 R~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
|++++. .++++++.++.|.+...+
T Consensus 376 Ris~~~---~~~~l~~~l~rl~~~~~~ 399 (401)
T TIGR01264 376 RVVLTV---PVVMMEEACSRIQEFCER 399 (401)
T ss_pred EEEEcC---CHHHHHHHHHHHHHHHhc
Confidence 999964 378888888888776543
No 202
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=90.25 E-value=3.8 Score=36.33 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=24.5
Q ss_pred CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 170 GVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 170 g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
+..++|+++. ...++++|+++++.|++...+
T Consensus 358 ~~~~lR~~p~-~~~~~~~i~~~l~~l~~~l~~ 388 (389)
T PRK01278 358 GDNVVRLLPP-LIITEEEIDEALERLERAAES 388 (389)
T ss_pred CCCEEEEeCC-cccCHHHHHHHHHHHHHHHHh
Confidence 3468999984 467899999999999876543
No 203
>PRK06290 aspartate aminotransferase; Provisional
Probab=90.23 E-value=1.4 Score=39.76 Aligned_cols=91 Identities=9% Similarity=0.028 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEE-EecCC--------Cc-chHHHhhc--eeec-ceEECCEEEEE
Q 041549 109 MYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCF-RLKPK--------RE-SDGSELNQ--LSLT-QATLGGVYVIR 175 (218)
Q Consensus 109 ~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~F-r~~~~--------~~-~~~~~Ln~--~~vs-~~~~~g~~~lR 175 (218)
++..+...+..+++.+.|++. ++.+. +|..+...| ++++. +. +..+.|.+ .++. +.. ....++|
T Consensus 303 ~~~~~~~~~~~~~l~~~L~~~-g~~~~-~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~-~~~~~lR 379 (410)
T PRK06290 303 EKIREKYSRRLDKLVKILNEV-GFKAE-MPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWD-DAGHFLR 379 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCeec-CCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCc-cccCeEE
Confidence 334444456777888888886 77655 456666654 55432 11 12344433 2222 211 1124899
Q ss_pred EecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 176 CSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 176 ~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
++++.+..++++.+++++.|++...++
T Consensus 380 i~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 380 FSVTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred EEEEcccccccchhHHHHHHHHHHhhc
Confidence 999989999999999999998876654
No 204
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=90.09 E-value=2.4 Score=36.75 Aligned_cols=83 Identities=12% Similarity=0.029 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceE-E--CCEEEEEEecCCCCCc
Q 041549 110 YHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQAT-L--GGVYVIRCSIGTTLTQ 184 (218)
Q Consensus 110 ~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~-~--~g~~~lR~~~~n~~tt 184 (218)
+..+...+..+++.+.|++. ++++..++..+.+.++++ .+.+..+.+.+ +.+.+.. . .|..++|+++. +
T Consensus 243 ~~~~~~~~~r~~l~~~L~~~-g~~~~~~~~g~f~~~~~~-~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRis~~----~ 316 (332)
T PRK06425 243 HSLDIMENERSYLINNLEAM-GFRAAGDPSANFITFMIP-DAHDFYSYLLKNGILVRLLDDYECLGEQYIRIAIR----R 316 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCEECCCCCceEEEEEcC-CHHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC----C
Confidence 44555556778888999887 788776677777888765 22223344433 3333221 1 12468999985 3
Q ss_pred HHHHHHHHHHHHHH
Q 041549 185 DRHIDDLRKLIQEK 198 (218)
Q Consensus 185 ~~di~~l~~~l~~~ 198 (218)
.++++.++++|+++
T Consensus 317 ~~~~~~l~~al~~~ 330 (332)
T PRK06425 317 RSFNIKLVNALRNF 330 (332)
T ss_pred HHHHHHHHHHHHHH
Confidence 67999999999864
No 205
>PLN02242 methionine gamma-lyase
Probab=89.93 E-value=5.6 Score=36.07 Aligned_cols=102 Identities=12% Similarity=0.177 Sum_probs=63.2
Q ss_pred CCCeeeecccccCCCccc--eeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 21 LADSVSLNPHKWFLTNMD--CGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 21 ~aDSi~~d~HK~l~~P~~--~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
++|.+...++|++.++-. .|++.. ++... ..+.. +.. +. ....|+ ...+...|+
T Consensus 213 g~divv~S~SK~l~g~g~~~gG~iv~-~~~li-~~l~~---~~~-------------~~-----~~~~g~-~~~~~~A~l 268 (418)
T PLN02242 213 GADVVVHSISKFISGGADIIAGAVCG-PAELV-NSMMD---LHH-------------GA-----LMLLGP-TMNPKVAFE 268 (418)
T ss_pred CCcEEEEeCccccCCCCCceEEEEEc-CHHHH-HHHHH---Hhh-------------hh-----hhccCC-CCCHHHHHH
Confidence 489999999999998865 366554 33332 22211 100 00 001111 112344554
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-------------------CceeEEEEecC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR-------------------KCALVCFRLKP 149 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~-------------------~~~iV~Fr~~~ 149 (218)
.+ .|...+..++++..+.++++++.|+++ ++++..|. -.++++|.+.+
T Consensus 269 ~~--~~l~tl~~r~~~~~~~a~~la~~L~~~-~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~ 335 (418)
T PLN02242 269 LS--ERLPHLSLRMKEHCRRAMEYAKRMKEL-GLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDT 335 (418)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHHHHHHHhC-CCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECC
Confidence 44 455677788889999999999999998 57887541 24689999963
No 206
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=89.80 E-value=4 Score=35.54 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc-chHHHhhc--eeecce-EE--CCEEEEEEecCCC
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE-SDGSELNQ--LSLTQA-TL--GGVYVIRCSIGTT 181 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~-~~~~~Ln~--~~vs~~-~~--~g~~~lR~~~~n~ 181 (218)
+++..++..+..+++.+.|. +++ .++..+.+.+++.+.+. +..+.|.+ +.+.+. .. .+..++|++++
T Consensus 272 ~~~~~~~~~~~r~~l~~~l~----~~~-~~~~~~~i~~~~~~~~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~-- 344 (361)
T PRK00950 272 IEKSIEHGIKSREYLYNELP----FKV-YPSEANFVLVDVTPMTAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG-- 344 (361)
T ss_pred HHHHHHHHHHHHHHHHhhcC----eeE-CCCcceEEEEECCCCCHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC--
Confidence 44444444444445544443 554 34566677777743332 22344444 333321 12 23468999985
Q ss_pred CCcHHHHHHHHHHHHHH
Q 041549 182 LTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 182 ~tt~~di~~l~~~l~~~ 198 (218)
+.++++++++.|+++
T Consensus 345 --~~~~~~~l~~~L~~i 359 (361)
T PRK00950 345 --TFEENERFLEILKEI 359 (361)
T ss_pred --CHHHHHHHHHHHHHH
Confidence 567999999999875
No 207
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=89.71 E-value=2.5 Score=37.48 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-Cc-chHHHhhc--eeecceE-ECCEEEEEEecCCCC
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-RE-SDGSELNQ--LSLTQAT-LGGVYVIRCSIGTTL 182 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~~-~~~~~Ln~--~~vs~~~-~~g~~~lR~~~~n~~ 182 (218)
+++..+...+..+++.+.|++++.+++ .|+..+.+.++..+. +. +..+.|.+ +.+.... ..+..++|++++
T Consensus 289 ~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~~~f~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~--- 364 (380)
T PLN03026 289 LEDVKNALVEERERLFGLLKEVPFLEP-YPSDANFILCRVTSGRDAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG--- 364 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCeE-CCCCCeEEEEECCCCCCHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC---
Confidence 445555556777888899998755554 566777888887532 22 22334433 2222111 123468999986
Q ss_pred CcHHHHHHHHHHHHHH
Q 041549 183 TQDRHIDDLRKLIQEK 198 (218)
Q Consensus 183 tt~~di~~l~~~l~~~ 198 (218)
+.++++.+++.|+++
T Consensus 365 -~~~~~~~l~~al~~~ 379 (380)
T PLN03026 365 -KPEHTDALMEALKQL 379 (380)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 467889999988753
No 208
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=89.67 E-value=5.2 Score=35.07 Aligned_cols=84 Identities=10% Similarity=0.042 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecce-EEC--CEEEEEEecCCCCC
Q 041549 109 MYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQA-TLG--GVYVIRCSIGTTLT 183 (218)
Q Consensus 109 ~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~-~~~--g~~~lR~~~~n~~t 183 (218)
.+.++...+..+.+.+.|++.+++++. +|..+.+.+++++. .+..+.+.+ +.+.+. .+. +..++|+++.
T Consensus 264 ~~~~~~~~~~r~~l~~~L~~~~~~~~~-~~~g~f~~~~~~~~-~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~~---- 337 (354)
T PRK06358 264 KKTIQWIKEEKDFLYNGLSEFKGIKVY-KPSVNFIFFKLEKP-IDLRKELLKKGILIRSCSNYRGLDENYYRVAVK---- 337 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEc-CCcceEEEEEcCch-HHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC----
Confidence 555666667788899999888887765 45666666666532 233344433 333322 122 3468999975
Q ss_pred cHHHHHHHHHHHHHH
Q 041549 184 QDRHIDDLRKLIQEK 198 (218)
Q Consensus 184 t~~di~~l~~~l~~~ 198 (218)
+.++.+++++.|+++
T Consensus 338 ~~~~~~~l~~~l~~~ 352 (354)
T PRK06358 338 SREDNKKLLKALEVI 352 (354)
T ss_pred CHHHHHHHHHHHHHH
Confidence 367888899888765
No 209
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=89.64 E-value=5 Score=35.80 Aligned_cols=90 Identities=11% Similarity=0.085 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC------Cc-chHHHh-hc--eeecceE-ECCEEEEEE
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK------RE-SDGSEL-NQ--LSLTQAT-LGGVYVIRC 176 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~------~~-~~~~~L-n~--~~vs~~~-~~g~~~lR~ 176 (218)
+++..+...+..+.+.+.|++++++++..|.....+-+++++. +. +....+ .+ +.+.+.. .....++|+
T Consensus 300 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~iRi 379 (403)
T TIGR01265 300 FDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGLPNWVRI 379 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCCCCeEEE
Confidence 4445555566677888899888788765554455555665432 11 223443 23 3333322 223468999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHHHH
Q 041549 177 SIGTTLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 177 ~~~n~~tt~~di~~l~~~l~~~~~ 200 (218)
++.. .++.+++.++.|.++..
T Consensus 380 s~~~---~~~~l~~~l~~l~~~~~ 400 (403)
T TIGR01265 380 TITV---PESMLEEACSRIKEFCE 400 (403)
T ss_pred EecC---CHHHHHHHHHHHHHHHH
Confidence 9964 36677777777766543
No 210
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=89.58 E-value=3.8 Score=37.26 Aligned_cols=104 Identities=11% Similarity=-0.009 Sum_probs=61.9
Q ss_pred hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceeEEEEecCCC-c-chHHHhh-ceeecceEE
Q 041549 94 LKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKCALVCFRLKPKR-E-SDGSELN-QLSLTQATL 168 (218)
Q Consensus 94 l~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~~iV~Fr~~~~~-~-~~~~~Ln-~~~vs~~~~ 168 (218)
.....+|+.+-.+.+.+.+ .++.++|.+.|++..++..+.+ ....++.+-+.+.. . ...+.+. +..+...
T Consensus 320 aaa~a~l~~i~~~~~~~~~---~~~g~~l~~~L~~~~~~~~v~~vRg~Gl~~~iel~~~~~~~~i~~~l~e~Gi~v~~-- 394 (429)
T PRK06173 320 AIAAESIRLLLESPWQQNI---QRIEAQLKQELAPAAEFDSVAEVRVLGAIGVVEMKEPVNMATLQPRFVEHGIWVRP-- 394 (429)
T ss_pred HHHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEeCCcccHHHHHHHHHHCCeEEEe--
Confidence 3445566666555554444 5788888888875433333322 23345555554321 1 1123332 3333222
Q ss_pred CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 169 GGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 169 ~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
.| .+||+.|. ...+++||+++++.|++...++.+
T Consensus 395 ~g-~~l~~~Pp-l~it~~ei~~~~~~l~~~l~~~~~ 428 (429)
T PRK06173 395 FG-KLVYIMPP-FIISPDELSQLTSGLLRVLKQEYN 428 (429)
T ss_pred cC-CEEEEeCC-ccCCHHHHHHHHHHHHHHHHHHhc
Confidence 23 48999995 588999999999999999877654
No 211
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=89.56 E-value=3.4 Score=36.45 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceE-E-CCEEEEEEecCCC
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQAT-L-GGVYVIRCSIGTT 181 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~-~-~g~~~lR~~~~n~ 181 (218)
+-+.+.++...+..+++.+.|++.+++..+.|+..+.+-+++++ ..+..+.+.+ +.+.+.. . ....++|++++
T Consensus 269 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~-~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~-- 345 (364)
T PRK04781 269 AVTARRVAEVRAERERLHAALAQLPGVRRVYPSQGNFLLVRFDD-AEAAFQALLAAGVVVRDQRAAPRLSDALRITLG-- 345 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCCCCcEEEEEcCC-HHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCC--
Confidence 34555566666777889999998888764556666666666642 2233344434 3332221 1 12458999986
Q ss_pred CCcHHHHHHHHHHHHHH
Q 041549 182 LTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 182 ~tt~~di~~l~~~l~~~ 198 (218)
+.++++++++.|+++
T Consensus 346 --~~~~~~~l~~al~~~ 360 (364)
T PRK04781 346 --TPEQNDRVLAALQRT 360 (364)
T ss_pred --CHHHHHHHHHHHHHH
Confidence 478899999999865
No 212
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=89.55 E-value=1.7 Score=42.17 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=62.4
Q ss_pred Cccccccc-CccccccccCC-CCC---C--eeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCC
Q 041549 1 QAYRSACI-CPEFRHYLNGV-ELA---D--SVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTN 73 (218)
Q Consensus 1 ~A~Gg~~~-~~~~r~~~~gi-~~a---D--Si~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~ 73 (218)
.|||+.+. .|.+++.. ++ .+| | .++-+.||.|.+-=.+|+|.++..-. ++.+ +..|+-..+.
T Consensus 331 EAwgah~~F~p~~~~~s-am~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~vd-~~~~--n~a~~m~~ST------- 399 (714)
T PRK15400 331 SAWVPYTNFSPIYEGKC-GMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVN-EETF--NEAYMMHTTT------- 399 (714)
T ss_pred ccchhhhccCcccCCcC-hhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCCCC-HHHH--HHHHHHHcCC-------
Confidence 59999654 47665332 33 445 5 89999999999988888887765421 1222 1123322221
Q ss_pred CCCccCCcCccccCCCCCchhHHHHHHHH--hcHHHHHHHHHHHHHHHHHHHHHHhcCCC------eEEecC
Q 041549 74 VAPVIDYKDWQIALSRRFKALKLWTVIRK--HGYSGLMYHIRSDVNMAKRFEAMVAKDER------FETVEP 137 (218)
Q Consensus 74 ~~~~~~~~~~tl~~sR~~~al~~w~~l~~--~G~~g~~~~i~~~~~la~~l~~~L~~~~~------~el~~~ 137 (218)
.+. |-+ ..++..-..+.. .|.+-+ +..++++..+++.|.+.++ |+++.+
T Consensus 400 ---SPs---Y~l-----~ASLD~a~~~m~~~~G~~l~----~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~ 456 (714)
T PRK15400 400 ---SPH---YGI-----VASTETAAAMMKGNAGKRLI----NGSIERAIKFRKEIKRLRTESDGWFFDVWQP 456 (714)
T ss_pred ---CcH---HHH-----HHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHhCCCcccCceEEecCh
Confidence 011 111 123333332221 454444 4455688888888888777 888753
No 213
>PRK09105 putative aminotransferase; Provisional
Probab=89.34 E-value=2.2 Score=37.73 Aligned_cols=85 Identities=8% Similarity=0.163 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceEEC-CEEEEEEecCCCCCc
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQATLG-GVYVIRCSIGTTLTQ 184 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~~~-g~~~lR~~~~n~~tt 184 (218)
+++..++..+..+++.+.|++. ++++. ++..+.+.++......+....|.+ +.+.. ... ...++|++++ +
T Consensus 281 ~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~~~f~~~~~~~~~~~l~~~L~~~gI~v~~-~~~~~~~~~Ris~~----~ 353 (370)
T PRK09105 281 VPQRRAENAAVREDTIAWLKKK-GYKCT-PSQANCFMVDVKRPAKAVADAMAKQGVFIGR-SWPIWPNWVRVTVG----S 353 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCCcC-CCCCcEEEEeCCCCHHHHHHHHHHCCcEEec-CCCCCCCeEEEEcC----C
Confidence 4455556667888888999886 77755 466666666553211122333333 33421 122 2468999985 4
Q ss_pred HHHHHHHHHHHHHHH
Q 041549 185 DRHIDDLRKLIQEKA 199 (218)
Q Consensus 185 ~~di~~l~~~l~~~~ 199 (218)
+++++++++.|+++.
T Consensus 354 ~~~~~~l~~al~~~~ 368 (370)
T PRK09105 354 EEEMAAFRSAFAKVM 368 (370)
T ss_pred HHHHHHHHHHHHHHh
Confidence 688999999988653
No 214
>PRK06207 aspartate aminotransferase; Provisional
Probab=89.04 E-value=6.2 Score=35.34 Aligned_cols=92 Identities=14% Similarity=0.049 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC--Cc-chHHHhh-c--eeecceE-E--CCEEEEEEe
Q 041549 107 GLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK--RE-SDGSELN-Q--LSLTQAT-L--GGVYVIRCS 177 (218)
Q Consensus 107 g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~--~~-~~~~~Ln-~--~~vs~~~-~--~g~~~lR~~ 177 (218)
-++++++...+..+.+.+.|++++++++..|.....+..++++. +. +....+. + +.+.+.. . .+..++|++
T Consensus 302 ~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~~~~~~~Ris 381 (405)
T PRK06207 302 WMKDRIARHQAIRDDLLRVLRGVEGVFVRAPQAGSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSPHTADSIRLN 381 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceecCCCeeEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCCCCCCeEEEE
Confidence 36677777777788898999888788765433344555555432 22 2234442 3 3343322 1 234689999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 178 IGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 178 ~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
+.. +.+++++.++.|.+..++
T Consensus 382 ~~~---~~~~l~~al~rl~~~l~~ 402 (405)
T PRK06207 382 FSQ---DHAAAVAAAERIAQLIER 402 (405)
T ss_pred ecC---CHHHHHHHHHHHHHHHHH
Confidence 973 478888877777766543
No 215
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=89.02 E-value=5.6 Score=35.04 Aligned_cols=142 Identities=11% Similarity=0.055 Sum_probs=68.5
Q ss_pred CCeeeecccccCCCccceeEEEEeCCcchhhhhc-CCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHHH
Q 041549 22 ADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQS-TKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVI 100 (218)
Q Consensus 22 aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~-~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~l 100 (218)
+|-+...++|+|.++. .|+++.++. .. +.+. ...+|.. +.+ +........+|
T Consensus 195 ~divv~s~SKalaG~r-~G~v~~~~~-li-~~l~~~~~~~~~---------------------s~~---~~~~~aa~~aL 247 (346)
T TIGR03576 195 ADLVVTSTDKLMDGPR-GGLLAGRKE-LV-DKIKSVGEQFGL---------------------EAQ---APLLAAVVRAL 247 (346)
T ss_pred CcEEEeccchhccccc-eEEEEeCHH-HH-HHHHHhhcCccc---------------------Ccc---HHHHHHHHHHH
Confidence 6888899999876665 476665443 32 3332 1112211 110 01111222234
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc-ch-HHHhhc--eeecceE-EC-CEEEE
Q 041549 101 RKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE-SD-GSELNQ--LSLTQAT-LG-GVYVI 174 (218)
Q Consensus 101 ~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~-~~-~~~Ln~--~~vs~~~-~~-g~~~l 174 (218)
+.+..+..++.++ +..+.+.+.+++ +.+. ++..+.+-++..+.+. +. ...|.+ +.+.+.. .. ...++
T Consensus 248 ~~~~~~~~~~~l~---~r~~~~~~~l~~---~~~~-~~~~~f~~~~~~~~~~~~~~~~ll~~~gV~v~~~~~f~~~~~~v 320 (346)
T TIGR03576 248 EEFELSRIRDAFK---RKEEVYLRLFDK---LNVE-RTPTGFVIKGVEEEKLIEIGLDLLRNYGIITITAVGMPGASKTL 320 (346)
T ss_pred hhccHHHHHHHHH---HHHHHHHHHHHh---CCCC-cCCCeEEEEeCCCCCHHHHHHHHHHhCCEEEeCCcccCCCCCeE
Confidence 4333333333333 444455555553 3332 3445555556543221 22 233433 2232211 11 24589
Q ss_pred EEecCCCCCcHHHHHHHHHHHHH
Q 041549 175 RCSIGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 175 R~~~~n~~tt~~di~~l~~~l~~ 197 (218)
|++++.+.-+..+++.+++.|++
T Consensus 321 Ris~~~~~~~~~~~~~~~~al~~ 343 (346)
T TIGR03576 321 RFDLAAKDAERIGDDYLVEAVKD 343 (346)
T ss_pred EEEEecChHHhcCHHHHHHHHHh
Confidence 99997544344479999998875
No 216
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=88.96 E-value=6.1 Score=36.31 Aligned_cols=106 Identities=13% Similarity=0.041 Sum_probs=61.8
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CeE-EecC--CCceeEEEEecCCCc--chHHH-hhceeecceE
Q 041549 95 KLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDE-RFE-TVEP--RKCALVCFRLKPKRE--SDGSE-LNQLSLTQAT 167 (218)
Q Consensus 95 ~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~-~~e-l~~~--~~~~iV~Fr~~~~~~--~~~~~-Ln~~~vs~~~ 167 (218)
...++|+.+-.+++.+++ .++.++|.+.|++.. ++. ++.+ ....++.+.+.+... ...+. +++..+....
T Consensus 342 aala~L~~i~~~~l~~~~---~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~ 418 (459)
T PRK11522 342 AALATINVLLEQNLPAQA---EQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGT 418 (459)
T ss_pred HHHHHHHHHhcchHHHHH---HHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCchHHHHHHHHHHHCCeEEEec
Confidence 344566777666655555 478888888887641 222 2221 223455555543211 11222 2333332222
Q ss_pred ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 168 LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 168 ~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
..+..++|+++. ...+++|||++++.+++...++..
T Consensus 419 ~~~~~~lr~~Pp-l~~t~~~id~~l~~l~~~l~~~~~ 454 (459)
T PRK11522 419 LNNAKTIRIEPP-LTLTIEQCEQVLKAARKALAAMRV 454 (459)
T ss_pred CCCCCEEEEECC-ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 224468999995 689999999999999988877654
No 217
>PRK06541 hypothetical protein; Provisional
Probab=88.88 E-value=4.6 Score=37.10 Aligned_cols=103 Identities=12% Similarity=0.129 Sum_probs=58.0
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceeEEEEecCC-------Ccch----H-----HH-h
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKCALVCFRLKPK-------RESD----G-----SE-L 158 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~~iV~Fr~~~~-------~~~~----~-----~~-L 158 (218)
.+++.+-.+++.+.+ .++.++|.+.|++.....++.+ ....+..+.+... +... . .. +
T Consensus 337 a~l~~l~~~~~~~~~---~~~g~~l~~~L~~l~~~~~v~~vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 413 (460)
T PRK06541 337 ANLDIFEREGLLDHV---RDNEPAFRATLEKLLDLPIVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALF 413 (460)
T ss_pred HHHHHHHhccHHHHH---HHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHH
Confidence 345555555555544 4788888888887533222211 2233344443211 0000 1 11 2
Q ss_pred hceeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 159 NQLSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 159 n~~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
.++.+....-.|..+||+++. ...|++|||++++.+++...++.+
T Consensus 414 ~~Gi~~~~~~~g~~~lrl~Pp-l~~t~~~id~~~~~l~~~l~~~~~ 458 (460)
T PRK06541 414 EAGLYCRADDRGDPVVQLAPP-LISGQEEFDEIEQILRSVLTEAWA 458 (460)
T ss_pred hCCeEEEecCCCCCEEEEECC-CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 223222221124468999985 588999999999999999877654
No 218
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=88.47 E-value=1.3 Score=40.61 Aligned_cols=155 Identities=13% Similarity=0.098 Sum_probs=84.5
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCC---cchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHH
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHS---SFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKL 96 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~---~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~ 96 (218)
+.+||+++++-|-+++|+| |+|..+++ ..++..-..-..|=+ +.+|+ +..++-+..
T Consensus 255 ~~aDsvt~slsKglgApvG-g~Lag~d~~~~~l~~~~~~~~i~~EG-----------------f~tYG---Glagrd~ea 313 (467)
T TIGR02617 255 KYADMLAMSAKKDAMVPMG-GLLCFKDDSFFDVYTECRTLCVVQEG-----------------FPTYG---GLEGGAMER 313 (467)
T ss_pred ccCCEEEEEcCCCCCCccc-ceEEecchhHHHHHHHHHhhcccccC-----------------CcCcC---chhHHHHHH
Confidence 7899999999999999999 67777777 433221111111111 11222 222333322
Q ss_pred HH-HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEE----e---cCCCc----chHHHhhc----
Q 041549 97 WT-VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFR----L---KPKRE----SDGSELNQ---- 160 (218)
Q Consensus 97 w~-~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr----~---~~~~~----~~~~~Ln~---- 160 (218)
-+ +|+.- --...+++.+...+||.++|++. |+-++. ..+--+|- + .|..+ .....|-.
T Consensus 314 ~a~Gl~e~---~~~~yl~~ri~qv~yl~~~L~~~-Gvpi~~--~Gghav~iDa~~~lphip~~~fpa~al~~~ly~~~Gi 387 (467)
T TIGR02617 314 LAVGLYDG---MNLDWLAYRINQVQYLVNGLEEI-GVVCQQ--AGGHAAFVDAGKLLPHIPADQFPAHALACELYKVAGI 387 (467)
T ss_pred HHhhhhhc---ccHHHHHHHHHHHHHHHHHHHhC-CCcEEe--cCccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCc
Confidence 21 23322 23455666678999999999985 887776 33333332 1 11111 11222221
Q ss_pred -----eeecceE--------ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 161 -----LSLTQAT--------LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 161 -----~~vs~~~--------~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
+-++..+ ...--.+|+++--=--|.+|+|-+.+.+..+.++
T Consensus 388 R~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~ 441 (467)
T TIGR02617 388 RAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKEN 441 (467)
T ss_pred ceEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHhh
Confidence 1111000 0113579998844345688999999998887654
No 219
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=88.43 E-value=4.4 Score=36.03 Aligned_cols=90 Identities=18% Similarity=0.123 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc-chHHHhhc-eeecceE--EC-CEEEEEEecCC
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE-SDGSELNQ-LSLTQAT--LG-GVYVIRCSIGT 180 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~-~~~~~Ln~-~~vs~~~--~~-g~~~lR~~~~n 180 (218)
+-+++.++...+-.+++.+.|+.++ +.-+.|...|.|.++...... ...+.|.+ +.+.+.. .. ...++|+++..
T Consensus 259 ~~~~~~~~~~~~~r~rl~~~l~~~~-~~~v~pS~aNFvlv~~~~~~~~~l~~~L~~~giivR~~~~~~~~~~~lRitvgt 337 (356)
T COG0079 259 DYLEESVERIREERERLYAALKALG-LFGVFPSQANFVLVRVPDAEAAALAEALLKKGILVRDCSSVGLLPGYLRITVGT 337 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCeecCCCCcEEEEECCCccHHHHHHHHHHCCEEEEeCCCCCCCCCeEEEEeCC
Confidence 4567777777888899999999986 664556668889888875211 23445544 3333221 11 24589999863
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 041549 181 TLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 181 ~~tt~~di~~l~~~l~~~~~ 200 (218)
+++.++++++|.+...
T Consensus 338 ----~een~~ll~AL~~~~~ 353 (356)
T COG0079 338 ----PEENDRLLAALREVLK 353 (356)
T ss_pred ----HHHHHHHHHHHHHHHh
Confidence 5566999999987653
No 220
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=88.31 E-value=7.7 Score=34.23 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-Cc-chHHHhhc-eeecceEECCEEEEEEecCCCC
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-RE-SDGSELNQ-LSLTQATLGGVYVIRCSIGTTL 182 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~~-~~~~~Ln~-~~vs~~~~~g~~~lR~~~~n~~ 182 (218)
+.+.+.++...+..+.+.+.|++++++++. |+..+.+.+++++. +. +..+.+.+ ..... .+..++|+++..
T Consensus 281 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-p~~g~f~~~~l~~~~~~~~~~~~l~~~gi~v~---~~~~~lRls~~~-- 354 (374)
T PRK02610 281 QELLAAIPEILQERDRLYQALQELPQLRVW-PSAANFLYLRLSQDAALAALHQALKAQGTLVR---HTGGGLRITIGT-- 354 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcEeC-CCcceEEEEeCCCCCCHHHHHHHHHHCCEEEE---eCCCeEEEeCCC--
Confidence 455556666666677788888888888753 55555566666532 22 22344433 22221 234579999863
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 041549 183 TQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 183 tt~~di~~l~~~l~~~~~ 200 (218)
.+++++.++.|+++..
T Consensus 355 --~~~~~~~l~~l~~~l~ 370 (374)
T PRK02610 355 --PEENQRTLERLQAALT 370 (374)
T ss_pred --HHHHHHHHHHHHHHHh
Confidence 4567888888876654
No 221
>PRK05957 aspartate aminotransferase; Provisional
Probab=87.99 E-value=13 Score=33.03 Aligned_cols=96 Identities=11% Similarity=0.148 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEE-EEecC-CCc-chHHHhhc---eeecceE---ECCEEEEEE
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVC-FRLKP-KRE-SDGSELNQ---LSLTQAT---LGGVYVIRC 176 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~-Fr~~~-~~~-~~~~~Ln~---~~vs~~~---~~g~~~lR~ 176 (218)
+-+++.++...+..+.+.+.|++++++..+.+|..+..+ +++.+ .++ +..+.+.+ +.+.+.. ..+..++|+
T Consensus 283 ~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi 362 (389)
T PRK05957 283 SYCQQHLPEIAQVRQILLKSLGQLQDRCTLHPANGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKNGCYLRI 362 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCCCCEEEE
Confidence 335666666667788888999887775334556655544 45432 222 33455532 3444321 122458999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 177 SIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 177 ~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
++.. .+.+++++.++.|.+...++.
T Consensus 363 s~~~--~~~~~l~~~~~~l~~~~~~~~ 387 (389)
T PRK05957 363 AYGA--LQKATAKEGIERLVQGLKTIV 387 (389)
T ss_pred EEec--CCHHHHHHHHHHHHHHHHhhh
Confidence 9863 457788887777777665543
No 222
>PRK07682 hypothetical protein; Validated
Probab=87.87 E-value=10 Score=33.32 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=55.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEE-ecC--CCc-chHHHh-hc--eeecceE---ECCEEE
Q 041549 104 GYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFR-LKP--KRE-SDGSEL-NQ--LSLTQAT---LGGVYV 173 (218)
Q Consensus 104 G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr-~~~--~~~-~~~~~L-n~--~~vs~~~---~~g~~~ 173 (218)
|..-+++..+...+..+++.+.|++. ++++. +|..+...|. +.+ .+. +....+ .+ +.+.+.. ..+..+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~-~p~g~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~ 351 (378)
T PRK07682 274 GNDDVIRMRDSYRKRRNFFVTSFNEI-GLTCH-VPGGAFYAFPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGESGEGF 351 (378)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCeeEEEEEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCcCCCCe
Confidence 33345555666667788889999887 77754 3555554443 322 222 223343 23 3343321 123578
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 174 IRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 174 lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
+|+++++ +++++++.++.|.+...+
T Consensus 352 iRis~~~---~~~~l~~~l~~l~~~l~~ 376 (378)
T PRK07682 352 IRCSYAT---SLEQLQEAMKRMKRFVEN 376 (378)
T ss_pred EEEEeCC---CHHHHHHHHHHHHHHHhh
Confidence 9999863 588999999988876543
No 223
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=87.69 E-value=4.6 Score=34.96 Aligned_cols=137 Identities=12% Similarity=0.119 Sum_probs=70.5
Q ss_pred CeeeecccccCCCc-cceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHHHH
Q 041549 23 DSVSLNPHKWFLTN-MDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIR 101 (218)
Q Consensus 23 DSi~~d~HK~l~~P-~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~l~ 101 (218)
+-+..+++|+++.| ..+|+++..++ .. +.+.. +.. .++. ..+...++.+
T Consensus 186 ~i~~~S~SK~~g~~G~R~G~i~~~~~-~~-~~l~~---~~~-------------------~~~~------s~~~q~~~~~ 235 (330)
T TIGR01140 186 LVVLRSLTKFFGLAGLRLGFVVAHPA-LL-ARLRE---ALG-------------------PWTV------NGPARAAGRA 235 (330)
T ss_pred EEEEEecchhhcCchhhhhheeCCHH-HH-HHHHh---cCC-------------------CCCc------hHHHHHHHHH
Confidence 46677999998855 77899887654 32 33321 100 0111 1111222222
Q ss_pred HhcHHHH-HHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceE-EC--CEEEEE
Q 041549 102 KHGYSGL-MYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQAT-LG--GVYVIR 175 (218)
Q Consensus 102 ~~G~~g~-~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~-~~--g~~~lR 175 (218)
.+-..++ +...++..++.+++.+.|++++.+++. ++....+.+...+ ..+..+.|.+ +++.+.. .. +..++|
T Consensus 236 ~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~f~~~~~~~-~~~l~~~l~~~gi~v~pg~~f~~~~~~~iR 313 (330)
T TIGR01140 236 ALADTAWQAATRARLAAERARLAALLARLGGLEVV-GGTALFLLVRTPD-AAALHEALARRGILIRDFDNFPGLDPRYLR 313 (330)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHhCCCceEC-CCCCeEEEEEcCC-HHHHHHHHHHCCEEEEECCCCCCCCCCEEE
Confidence 2222222 444555567888899999998666654 3333334444332 2233444444 3333321 11 345899
Q ss_pred EecCCCCCcHHHHHHHHHHH
Q 041549 176 CSIGTTLTQDRHIDDLRKLI 195 (218)
Q Consensus 176 ~~~~n~~tt~~di~~l~~~l 195 (218)
+++.. ..++ +.+++.|
T Consensus 314 i~~~~---~~~~-~~~~~~l 329 (330)
T TIGR01140 314 FALPT---DEEN-DRLEEAL 329 (330)
T ss_pred EEecC---HHHH-HHHHHhh
Confidence 98853 3345 7777765
No 224
>PLN02624 ornithine-delta-aminotransferase
Probab=87.60 E-value=9.1 Score=35.26 Aligned_cols=98 Identities=11% Similarity=0.095 Sum_probs=53.9
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhc----CCC-eEEecCCCceeEEEEecCCC--cc----hHHHhhc--eeecc
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAK----DER-FETVEPRKCALVCFRLKPKR--ES----DGSELNQ--LSLTQ 165 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~----~~~-~el~~~~~~~iV~Fr~~~~~--~~----~~~~Ln~--~~vs~ 165 (218)
+|+.+-.+++.+.++ ++.++|.+.|++ .|. +.-+. +...++.+.+.... .. ....|.+ +++.+
T Consensus 337 aLe~l~~~~l~~~~~---~~~~~l~~~L~~l~~~~~~~i~~vr-g~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p 412 (474)
T PLN02624 337 ALQVVQDEKLAERSA---KLGQELRDQLQKIQKQFPKLIKEVR-GRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKP 412 (474)
T ss_pred HHHHHHhchHHHHHH---HHHHHHHHHHHHHHHhCCCceEEEE-eeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEec
Confidence 344444444544443 566666666655 332 22222 22334444443211 11 1233332 44443
Q ss_pred eEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 166 ATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 166 ~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
.+..+||+++ +..++++||+++++.|++.......
T Consensus 413 ---~~~~~lR~~p-~l~~t~e~id~~l~~L~~~l~~~~~ 447 (474)
T PLN02624 413 ---THDTIIRLAP-PLSISEDELQECSKALSDVLEHDLP 447 (474)
T ss_pred ---CCCCEEEEEC-CccCCHHHHHHHHHHHHHHHHHHHH
Confidence 2456899998 4689999999999999888766543
No 225
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=87.57 E-value=6.5 Score=34.47 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceEECCEEEEEEecCCCCC
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQATLGGVYVIRCSIGTTLT 183 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~~~g~~~lR~~~~n~~t 183 (218)
+.+.+.+++..+..+++.+.|++. ++++. ++..+.+.|...+...+..+.+.+ .++.. .....++|++++
T Consensus 275 ~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~--~~~~~~iRi~~~---- 346 (368)
T PRK03317 275 DELLASVAALRAERDRVVAWLREL-GLRVA-PSDANFVLFGRFADRHAVWQGLLDRGVLIRD--VGIPGWLRVTIG---- 346 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCEeC-CCCCcEEEEeccCCHHHHHHHHHHCCEEEEe--CCCCCeEEEecC----
Confidence 344555566666777888888886 77765 456666665222211222334433 34432 223468999974
Q ss_pred cHHHHHHHHHHHHHHHH
Q 041549 184 QDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 184 t~~di~~l~~~l~~~~~ 200 (218)
+.++++.+++.+++...
T Consensus 347 ~~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 347 TPEENDAFLAALAEVLA 363 (368)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 46789999999987753
No 226
>PRK08297 L-lysine aminotransferase; Provisional
Probab=87.30 E-value=5.8 Score=36.23 Aligned_cols=96 Identities=11% Similarity=0.108 Sum_probs=55.0
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhc----CCCeE-EecCCCceeEEEEecCCCc--chHHH-hhc-eeecceEEC
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAK----DERFE-TVEPRKCALVCFRLKPKRE--SDGSE-LNQ-LSLTQATLG 169 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~----~~~~e-l~~~~~~~iV~Fr~~~~~~--~~~~~-Ln~-~~vs~~~~~ 169 (218)
+|+.+..+++.+. ..++.++|.+.|++ .|.+- -+. ....++.+.+.+... ..... +++ .++.+ .
T Consensus 338 ~L~~l~~~~l~~~---~~~~g~~l~~~L~~l~~~~~~~~~~vr-g~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~---~ 410 (443)
T PRK08297 338 ILEVIEEDGLVEN---AARQGEYLLARLEELAAEFPAVVSNVR-GRGLMCAFDLPTTADRDEVIRRLWEEGVLVLP---C 410 (443)
T ss_pred HHHHHHhcCHHHH---HHHHHHHHHHHHHHHHHHCCCcceeee-ccceEEEEEecCHHHHHHHHHHHHHCCEEEec---C
Confidence 4555555544444 44677777777765 33321 111 334556666643210 11122 233 33432 2
Q ss_pred CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 170 GVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 170 g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
+...+|++|. ...|++|||++++.+++...++
T Consensus 411 ~~~~lr~~P~-l~~t~~eid~~l~~l~~~l~~~ 442 (443)
T PRK08297 411 GERSIRFRPA-LTVTTEEIDAAIDALRRALPEV 442 (443)
T ss_pred CCCeEEEECC-ccCCHHHHHHHHHHHHHHHHhh
Confidence 3457999985 6889999999999998887654
No 227
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=86.84 E-value=8.1 Score=35.55 Aligned_cols=151 Identities=12% Similarity=0.070 Sum_probs=78.1
Q ss_pred CCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHHHH
Q 041549 22 ADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIR 101 (218)
Q Consensus 22 aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~l~ 101 (218)
.|-+++ =|.+.+-++.|+++.++. + +.+. +.+ +. + |..+ -+......-++|+
T Consensus 293 PDiv~~--gKglggG~PlsAv~~~~~--~-~~~~--~~~--~~-----------~-------T~~g-npla~Aaa~a~L~ 344 (464)
T PRK06938 293 PDVVVL--SKAIGGSLPLAVVVYREW--L-DTWQ--PGA--HA-----------G-------TFRG-NQMAMAAGSATLR 344 (464)
T ss_pred CCEEEe--eccccCCCceEEEeehhH--h-hccC--CCC--CC-----------C-------CCCc-CHHHHHHHHHHHH
Confidence 666666 577777788999998755 2 2221 111 00 0 1110 0111223334566
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEecC--CCceeEEEEecCC--C----------cchHHH-----hhce
Q 041549 102 KHGYSGLMYHIRSDVNMAKRFEAMVAKD-ERFETVEP--RKCALVCFRLKPK--R----------ESDGSE-----LNQL 161 (218)
Q Consensus 102 ~~G~~g~~~~i~~~~~la~~l~~~L~~~-~~~el~~~--~~~~iV~Fr~~~~--~----------~~~~~~-----Ln~~ 161 (218)
.+-.+++.+.++ ++.++|.+.|++. ....++.+ ....++.+-+... . ...... ++++
T Consensus 345 ~l~~~~l~~~~~---~~G~~l~~~L~~l~~~~~~i~~VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 421 (464)
T PRK06938 345 YIKEHRLAEHAA---AMGERLREHLRQLQRDYPQLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRG 421 (464)
T ss_pred HHHHhHHHHHHH---HHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCC
Confidence 676666665554 6777777777653 11222221 1122333333211 0 011111 2233
Q ss_pred eecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 162 SLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 162 ~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
.+....-....+||+.|. ...|++||+++++.+++...++.+
T Consensus 422 ll~~~~g~~~~~l~~~Pp-l~it~~eid~~~~~l~~~l~~~~~ 463 (464)
T PRK06938 422 LILELGGRHGSVVRFLPP-LIITAEQIDEVAEIFAEAVAAAVA 463 (464)
T ss_pred eEEeecCCCCCEEEEECC-CccCHHHHHHHHHHHHHHHHHHhc
Confidence 322211011368999985 688999999999999988877653
No 228
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=86.84 E-value=6.5 Score=34.67 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc---chHHHhhc--eeec-ceEECCEEEEEEecCCC
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE---SDGSELNQ--LSLT-QATLGGVYVIRCSIGTT 181 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~---~~~~~Ln~--~~vs-~~~~~g~~~lR~~~~n~ 181 (218)
+++..+...+..+++.+.|++. ++... |...+.+.+...+... +..+.+.+ .++. +..-.+..++|+++.
T Consensus 272 ~~~~~~~~~~~r~~~~~~L~~~-g~~~~-p~~~~f~~~~~~~~~~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRis~~-- 347 (369)
T PRK08153 272 LAEVVGKIAAARDRIAAIARAN-GLTPL-PSATNFVAIDCGRDGAFARAVLDGLIARDIFVRMPGVAPLDRCIRVSCG-- 347 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCccC-CCcCcEEEEECCCCcccHHHHHHHHHHCCeEEeeCCCCCCCCeEEEecC--
Confidence 4444445556667777788875 67644 4555666555532111 12233323 3342 221123468999985
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 041549 182 LTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 182 ~tt~~di~~l~~~l~~~~~ 200 (218)
+++|++.+++.|++...
T Consensus 348 --~~~~~~~~~~al~~~~~ 364 (369)
T PRK08153 348 --PDEELDLFAEALPEALE 364 (369)
T ss_pred --CHHHHHHHHHHHHHHHH
Confidence 58999999999988754
No 229
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=86.79 E-value=4.6 Score=36.87 Aligned_cols=99 Identities=11% Similarity=0.089 Sum_probs=55.3
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-Cce---eEEEEecCCC-cch----HHHh-hce-eec
Q 041549 96 LWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR-KCA---LVCFRLKPKR-ESD----GSEL-NQL-SLT 164 (218)
Q Consensus 96 ~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~-~~~---iV~Fr~~~~~-~~~----~~~L-n~~-~vs 164 (218)
.-.+|+.+-.+++.+++ .++.++|.+.|++...+..+.+. ..+ -+-|...... .+. .+.+ ++. ++.
T Consensus 332 a~a~L~~l~~~~l~~~~---~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~ 408 (442)
T PRK13360 332 ALATLDLYEREGLLTRA---ARLAPYWEDALHSLRDAPHVIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIR 408 (442)
T ss_pred HHHHHHHHHhCCHHHHH---HHHHHHHHHHHHHhhcCCCeeeeeccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEE
Confidence 33456666556555544 47888888888765333222221 111 1223221111 111 1222 233 332
Q ss_pred ceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 165 QATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 165 ~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
. .+ ..+|+++. ...|++|||++++.+++...++
T Consensus 409 ~---~~-~~lr~~Pp-l~~t~~eid~~~~~l~~~l~~~ 441 (442)
T PRK13360 409 Y---TG-DILALSPP-LIIEEAQIDELFDILAQALKET 441 (442)
T ss_pred e---cC-CEEEEeCC-CccCHHHHHHHHHHHHHHHHHh
Confidence 2 23 47999985 6889999999999998887654
No 230
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=86.67 E-value=7.6 Score=35.17 Aligned_cols=93 Identities=9% Similarity=0.024 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCce-eEEEEecCC------Cc-chHHH-hhc--eeecce-EECCEEE
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCA-LVCFRLKPK------RE-SDGSE-LNQ--LSLTQA-TLGGVYV 173 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~-iV~Fr~~~~------~~-~~~~~-Ln~--~~vs~~-~~~g~~~ 173 (218)
+-++++++...+..+.+.+.|++++++.+...|..+ .+.++++.. ++ +.+.. +.+ +.+.+. ..+...+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~ 399 (430)
T PLN00145 320 EFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGMKNW 399 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCe
Confidence 345666666667788888999998888876545444 445554311 11 12223 333 333332 2344579
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 174 IRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 174 lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
+|+++.. .++++++.++.|.+...+
T Consensus 400 lRis~~~---~~~~l~~al~rl~~~~~~ 424 (430)
T PLN00145 400 LRITFAI---DPPSLEDGLERLKSFCLR 424 (430)
T ss_pred EEEEeCC---CHHHHHHHHHHHHHHHHH
Confidence 9999862 567777777766665543
No 231
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=86.67 E-value=5.1 Score=36.18 Aligned_cols=102 Identities=14% Similarity=0.086 Sum_probs=56.4
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEecC--CCceeEEEEecCCCcch----HHHhhc--eeecce
Q 041549 96 LWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDE-RFETVEP--RKCALVCFRLKPKRESD----GSELNQ--LSLTQA 166 (218)
Q Consensus 96 ~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~-~~el~~~--~~~~iV~Fr~~~~~~~~----~~~Ln~--~~vs~~ 166 (218)
...+|+.+-.+.+ +++..++.++|.+.|++.. .+.++.. ....++.+-+.+...+. .+.+.+ .++.+
T Consensus 296 a~a~L~~~~~~~l---~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~- 371 (408)
T PRK04612 296 ARVALRKLASPQI---AANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQ- 371 (408)
T ss_pred HHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCchhhHHHHHHHHHHHCCeEEee-
Confidence 3334555544444 4444567788877776631 1222221 22334444443211111 222222 33322
Q ss_pred EECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 167 TLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 167 ~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
.|...||+++. ...+++||+++++.+++...++.+
T Consensus 372 --~g~~~lRl~Pp-l~it~eeid~~l~~l~~~l~~~~~ 406 (408)
T PRK04612 372 --AGPDVLRFVPA-LNLTDAELADGLARLRLALADYVA 406 (408)
T ss_pred --CCCCEEEEcCC-ccCCHHHHHHHHHHHHHHHHHHhh
Confidence 24468999984 688999999999999988776543
No 232
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=86.61 E-value=14 Score=33.52 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=63.5
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEecCC--CceeEEEEecCC--CcchHHHhhc-eeecceEECCE
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDE-RFETVEPR--KCALVCFRLKPK--RESDGSELNQ-LSLTQATLGGV 171 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~-~~el~~~~--~~~iV~Fr~~~~--~~~~~~~Ln~-~~vs~~~~~g~ 171 (218)
++++.+-.+++-+.++ ++.++|.+.|+++. .+.++.+. ..-++..-+.+. ....+..+.+ ..+..+ -+.
T Consensus 295 a~l~~l~~e~ll~~v~---~~g~~~~~~L~~l~~~~~~v~~vRG~GLmiGiel~~~~~a~~~~~~~~~~gvL~~~--a~~ 369 (404)
T COG4992 295 AVLEVLLEEGLLENVR---EKGEYLLQRLRELKRRYPLVKEVRGRGLMIGIELKEPYRARDIVRALREEGVLVLP--AGP 369 (404)
T ss_pred HHHHHHcchhHHHHHH---HHHHHHHHHHHHHhhcCCceeeeecceeEEEEEecCcccHHHHHHHHHHCCeEEec--CCC
Confidence 4677788888877776 78888888888852 23344331 222334444332 1122344444 333221 355
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
.++|+.|. -..+++||++.++.+++.......
T Consensus 370 ~ViR~~Pp-L~i~~eei~~~~~~l~~~l~~~~~ 401 (404)
T COG4992 370 NVIRFLPP-LVITEEEIDEALDALERALAAASA 401 (404)
T ss_pred CeEEecCC-ccCCHHHHHHHHHHHHHHHHHhhh
Confidence 69999995 589999999999999988776543
No 233
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=86.51 E-value=6.8 Score=35.08 Aligned_cols=91 Identities=12% Similarity=0.033 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC------C-cchHHHhh-c--eeecceE-ECCEEEEEE
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK------R-ESDGSELN-Q--LSLTQAT-LGGVYVIRC 176 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~------~-~~~~~~Ln-~--~~vs~~~-~~g~~~lR~ 176 (218)
+++..+...+..+.+.+.|++..++.+..|.....+.++++.. + .+.++.+. + +.+.+.. .....++|+
T Consensus 307 ~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRi 386 (412)
T PTZ00433 307 LEQIVAKLEEGAMVLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRL 386 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEE
Confidence 3333444455667788888876677655433334455566431 1 12344443 3 3343322 222458999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 177 SIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 177 ~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
++.. .++++++.++.|.++.++
T Consensus 387 s~~~---~~e~l~~al~~l~~~~~~ 408 (412)
T PTZ00433 387 TISR---PVEVLREAVERIKAFCER 408 (412)
T ss_pred EecC---CHHHHHHHHHHHHHHHHH
Confidence 9964 377888888888776553
No 234
>PRK07681 aspartate aminotransferase; Provisional
Probab=86.50 E-value=4.6 Score=35.92 Aligned_cols=89 Identities=9% Similarity=0.025 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-Cc-chHHHh-h-c-eeecceE-E--CCEEEEEEec
Q 041549 107 GLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-RE-SDGSEL-N-Q-LSLTQAT-L--GGVYVIRCSI 178 (218)
Q Consensus 107 g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~~-~~~~~L-n-~-~~vs~~~-~--~g~~~lR~~~ 178 (218)
-+++..+...+..+.+.+.|++. ++++..|.....+..++++. +. +....+ . + +.+.+.. . .+..++|+++
T Consensus 290 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~~g~f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~ 368 (399)
T PRK07681 290 FCEKNRGIYQERRDTLVDGFRTF-GWNVDKPAGSMFVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIAL 368 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeeEEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEe
Confidence 34444444456677888889887 78765544444444555432 22 223343 3 2 3343321 1 2345899999
Q ss_pred CCCCCcHHHHHHHHHHHHHHH
Q 041549 179 GTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 179 ~n~~tt~~di~~l~~~l~~~~ 199 (218)
+. +++++++.++.|++.+
T Consensus 369 ~~---~~~~~~~~l~~l~~~~ 386 (399)
T PRK07681 369 VQ---DEEVLQQAVENIRNSG 386 (399)
T ss_pred cC---CHHHHHHHHHHHHHhc
Confidence 63 5789999999998754
No 235
>PRK07568 aspartate aminotransferase; Provisional
Probab=86.49 E-value=13 Score=32.73 Aligned_cols=95 Identities=12% Similarity=0.031 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcee-EEEEecCCCc-chHHHhh-------c-eeecceE-E---C
Q 041549 104 GYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCAL-VCFRLKPKRE-SDGSELN-------Q-LSLTQAT-L---G 169 (218)
Q Consensus 104 G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~i-V~Fr~~~~~~-~~~~~Ln-------~-~~vs~~~-~---~ 169 (218)
+.+-+++..+...+..+.+.+.|++++++.+.. |..+. +.++++..+. +..+.+. + +.+.+.. . .
T Consensus 283 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-p~g~~~~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~ 361 (397)
T PRK07568 283 PESYFDEVREEYKKRRDILYEELNKIPGVVCEK-PKGAFYIIAKLPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYATP 361 (397)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCceecC-CCcceEEEEecCCCCHHHHHHHHHhhcccccceEEEeCchHhcCCC
Confidence 334455555556677788889998887776554 44554 4566654322 2223332 1 2333321 1 1
Q ss_pred --CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 170 --GVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 170 --g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
+..++|++++ .+++++++.++.|.+...+.
T Consensus 362 ~~~~~~iRls~~---~~~~~~~~~~~~l~~~l~~~ 393 (397)
T PRK07568 362 GLGKNEIRIAYV---LNEEDLKRAMEILKEALEKY 393 (397)
T ss_pred CCCCCeEEEEEe---CCHHHHHHHHHHHHHHHHHh
Confidence 2358999985 24689999998888766553
No 236
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=86.40 E-value=9.1 Score=36.90 Aligned_cols=168 Identities=17% Similarity=0.168 Sum_probs=94.1
Q ss_pred cCCCCCCeeeecccccCCCcccee-----EEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCC
Q 041549 17 NGVELADSVSLNPHKWFLTNMDCG-----CLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRF 91 (218)
Q Consensus 17 ~gi~~aDSi~~d~HK~l~~P~~~g-----~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~ 91 (218)
.|-=++|---.|.||..+.|-|-| -+-||..- ...+..++- +..... .+-...+--.+-+|
T Consensus 729 pGd~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HL--apfLP~HpV-vs~~~~-----------~~~~~~gsVsaaP~ 794 (1001)
T KOG2040|consen 729 PGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL--APFLPSHPV-VSPGRP-----------EDTSPVGSVSAAPW 794 (1001)
T ss_pred CccccccceeecccceeeecCCCCCCCCCccchhhhc--cccCCCCCc-cCCCCC-----------CCCCCccceeccCC
Confidence 456678999999999998887654 45554432 112222221 110000 00001111122222
Q ss_pred c---hhH-HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEe----cC--C----Ccch-HH
Q 041549 92 K---ALK-LWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRL----KP--K----RESD-GS 156 (218)
Q Consensus 92 ~---al~-~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~----~~--~----~~~~-~~ 156 (218)
. .|+ -|+-++.+|..|+...-.-.+-.|+|++.+|+.+ .+++-...-+.|+--+ ++ . ...+ ..
T Consensus 795 Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~h--Ykil~~~~~~~vaHEFIlD~r~fK~~agieavDvAK 872 (1001)
T KOG2040|consen 795 GSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESH--YKILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAK 872 (1001)
T ss_pred CcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhc--cceeEecCCcceeeeeeeechhhccccCCcHHHHHH
Confidence 2 354 6778899999999988888899999999999975 4444322233443211 11 1 1112 24
Q ss_pred Hhhc-eeecceE---ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 157 ELNQ-LSLTQAT---LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 157 ~Ln~-~~vs~~~---~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
+|.+ .|-++|- +-| .|=+-+. .--+.+++|+|++++-.+-+|+.
T Consensus 873 RL~DYgFHaPTmswPV~g--tLMIEPT-ESE~k~ElDRfcdAliSIreEI~ 920 (1001)
T KOG2040|consen 873 RLMDYGFHAPTMSWPVAG--TLMIEPT-ESEDKAELDRFCDALISIREEIA 920 (1001)
T ss_pred HHHhccCCCCccccccCC--ceEeccC-ccccHHHHHHHHHHHHHHHHHHH
Confidence 5666 5544432 233 3444454 45667899999998877766553
No 237
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=86.04 E-value=9.4 Score=34.88 Aligned_cols=98 Identities=16% Similarity=0.140 Sum_probs=55.5
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-Ccee-EEEEecC--CCc-c----hHHHh-hceeecceE
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR-KCAL-VCFRLKP--KRE-S----DGSEL-NQLSLTQAT 167 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~-~~~i-V~Fr~~~--~~~-~----~~~~L-n~~~vs~~~ 167 (218)
.+|+.+-.+++. ++..++.++|.+.|++..++..+.+. ..++ ..+.+.+ ..+ . ..+.+ .+..+...
T Consensus 337 a~L~~i~~~~l~---~~~~~~g~~l~~~l~~l~~~~~v~~vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~- 412 (445)
T PRK09221 337 ATLDIYREEDLF---ERAAELAPYFEDAVHSLKGLPHVIDIRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRY- 412 (445)
T ss_pred HHHHHHHhccHH---HHHHHHHHHHHHHHHhhccCCCEEEEecCceEEEEEEecccccccchHHHHHHHHHHCCeEEee-
Confidence 456666555554 45568999999988876433322221 1222 2333322 111 1 11222 23333221
Q ss_pred ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 168 LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 168 ~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
.+ ..||+++. ...|++|||++++.+++...++
T Consensus 413 -~~-~~lr~~Pp-l~~t~~eid~~~~~l~~~l~~~ 444 (445)
T PRK09221 413 -TG-DTIALSPP-LIIEKAQIDELVDALGDALRAV 444 (445)
T ss_pred -cC-CEEEEECC-ccCCHHHHHHHHHHHHHHHHhh
Confidence 23 57999984 6889999999999998887653
No 238
>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]
Probab=85.99 E-value=8.5 Score=35.01 Aligned_cols=95 Identities=8% Similarity=0.111 Sum_probs=64.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCC--cchHHHh-hc--eee----cceEECCEEEE
Q 041549 104 GYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKR--ESDGSEL-NQ--LSL----TQATLGGVYVI 174 (218)
Q Consensus 104 G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~--~~~~~~L-n~--~~v----s~~~~~g~~~l 174 (218)
+.||...+ +.......++++.|.+. |+-++. -++.||=.+.-+.. .+..+.| ++ +|+ -+|..+|.--|
T Consensus 422 ~~eg~~lR-~~hqrnv~~~kq~l~~~-GiPVi~-~pSHIiPv~vgda~l~~~~sd~Li~~h~iYvQaINyPTV~rG~E~L 498 (570)
T KOG1360|consen 422 SEEGRVLR-RQHQRNVKYVKQLLMEL-GIPVIP-NPSHIIPVRVGDAALAKQASDILISKHNIYVQAINYPTVARGTERL 498 (570)
T ss_pred hhhhHHHH-HHHHHHHHHHHHHHHHc-CCcccC-CCcceeeeeccCHHHHHHHHHHHHHhcCeEEEeccCCcccccceee
Confidence 34443332 33456788999999886 888874 45788888875432 1223433 33 332 25666788889
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 175 RCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 175 R~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
|+++. |+.|.+.++.|++.+...=.++
T Consensus 499 RiaPT-P~HT~~mm~~lv~~l~~vw~~v 525 (570)
T KOG1360|consen 499 RIAPT-PHHTPQMMNILVNALLDVWNEV 525 (570)
T ss_pred ecCCC-CCCCHHHHHHHHHHHHHHHHHc
Confidence 99995 8999999999999998775554
No 239
>PTZ00377 alanine aminotransferase; Provisional
Probab=85.91 E-value=12 Score=34.44 Aligned_cols=87 Identities=20% Similarity=0.300 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCCeEEecCCCceeEEE-Eec-CCC------------cch-H-HHhhc--eeecce-EEC---CEEE
Q 041549 116 VNMAKRFEAMVAKDERFETVEPRKCALVCF-RLK-PKR------------ESD-G-SELNQ--LSLTQA-TLG---GVYV 173 (218)
Q Consensus 116 ~~la~~l~~~L~~~~~~el~~~~~~~iV~F-r~~-~~~------------~~~-~-~~Ln~--~~vs~~-~~~---g~~~ 173 (218)
-+..+.+.+.|++++++++.. |..+.-.| ++. +.. .+. + ..+.+ +.+.+. ... +..+
T Consensus 372 ~~rr~~l~~~L~~~~g~~~~~-p~gg~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~ 450 (481)
T PTZ00377 372 KRRAELLTDELNKIEGVSCQP-VEGAMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYH 450 (481)
T ss_pred HHHHHHHHHHHhcCCCcEeec-CCeeEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCE
Confidence 355667888888888888764 55555444 332 110 111 1 22333 233322 222 3458
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 041549 174 IRCSIGTTLTQDRHIDDLRKLIQEKADRLLLLQ 206 (218)
Q Consensus 174 lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~~ 206 (218)
+|+++. ++++++++.++.|.+...+..++.
T Consensus 451 ~Rls~~---~~~e~l~~~l~rl~~~~~~~~~~~ 480 (481)
T PTZ00377 451 FRITIL---PPEEQIEEMVKKIKEFHESFMKKY 480 (481)
T ss_pred EEEEEC---CCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999985 568899999999999888776654
No 240
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=85.79 E-value=9 Score=34.79 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=50.9
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC-CCeE-EecC--CCceeEEEEecCCCc--chHHHh-hc-eeecceEEC
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKD-ERFE-TVEP--RKCALVCFRLKPKRE--SDGSEL-NQ-LSLTQATLG 169 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~-~~~e-l~~~--~~~~iV~Fr~~~~~~--~~~~~L-n~-~~vs~~~~~ 169 (218)
++|+.+-.+++.+.++ ++.++|.+.|++. .... ++.+ ....++.+.+.+... .....+ ++ .++.+ .
T Consensus 330 a~L~~l~~~~l~~~~~---~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~---~ 403 (431)
T TIGR03251 330 RILEIIEEERLVDNAR---VQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFDLPSTADRDEVIRQLYREGVLLLG---C 403 (431)
T ss_pred HHHHHHHhcCHHHHHH---HHHHHHHHHHHHHHHhCccceecccccceeEEEEeCCHHHHHHHHHHHHhCCeEEec---C
Confidence 4556665555544443 5666666666542 1122 2222 233455666643211 112222 23 34432 2
Q ss_pred CEEEEEEecCCCCCcHHHHHHHHHHHHH
Q 041549 170 GVYVIRCSIGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 170 g~~~lR~~~~n~~tt~~di~~l~~~l~~ 197 (218)
+...+|+++. ..++++|||++++.+.+
T Consensus 404 g~~~lr~~P~-l~~t~~eid~~l~~l~~ 430 (431)
T TIGR03251 404 GERSIRFRPP-LTVTREEIDAAIDAIRR 430 (431)
T ss_pred CCCeEEEECC-ccCCHHHHHHHHHHHHh
Confidence 3357999995 79999999999999875
No 241
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=85.54 E-value=3 Score=36.24 Aligned_cols=85 Identities=11% Similarity=0.081 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCC--cchHHHhhc---eeecceE-ECCEEEEEEecCC
Q 041549 107 GLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKR--ESDGSELNQ---LSLTQAT-LGGVYVIRCSIGT 180 (218)
Q Consensus 107 g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~--~~~~~~Ln~---~~vs~~~-~~g~~~lR~~~~n 180 (218)
-++++.+...+..+++.+.|++. ++.+..++ .+++++...+.. .+..+.|-+ +.+.+.. .....++|+++
T Consensus 273 ~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~~~~iRi~~-- 348 (363)
T PF00155_consen 273 WLEELRERLRENRDLLREALEEI-GITVLPPE-AGFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGVPGYIRISL-- 348 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TSEEEHHS-BSSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTSTTEEEEEG--
T ss_pred ccccchhhHHHHHHHHHHHHHHh-hhheeecc-CccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCCCCEEEEEe--
Confidence 66777777888999999999987 99988755 777666543322 122334433 2222211 11145899998
Q ss_pred CCCcHHHHHHHHHHH
Q 041549 181 TLTQDRHIDDLRKLI 195 (218)
Q Consensus 181 ~~tt~~di~~l~~~l 195 (218)
...++++++++++.|
T Consensus 349 a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 349 ASHSEEDLEEALERL 363 (363)
T ss_dssp GCSCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHhhC
Confidence 378899999999875
No 242
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=85.51 E-value=6.3 Score=35.77 Aligned_cols=98 Identities=7% Similarity=-0.033 Sum_probs=55.2
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceeEEEEecCCC-c-chHHHh-hc-eeecceEE
Q 041549 95 KLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKCALVCFRLKPKR-E-SDGSEL-NQ-LSLTQATL 168 (218)
Q Consensus 95 ~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~~iV~Fr~~~~~-~-~~~~~L-n~-~~vs~~~~ 168 (218)
....+++.+-.+.+.+ +..++.++|.+.|++......+.+ ....++.+.+.+.. . ...+.+ ++ .++...
T Consensus 322 aa~a~l~~l~~~~~~~---~~~~~~~~l~~~L~~l~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gv~~~~~-- 396 (427)
T TIGR00508 322 VAEASLAILLEGEWQK---QVSAIENQLKRELSPLRKNPVVKDVRVLGAIGVVEMYKPVNVEELQKKFVEQGVWIRPF-- 396 (427)
T ss_pred HHHHHHHHHHhCCHHH---HHHHHHHHHHHHHHHhhcCCCEEeEeccccEEEEEECCccCHHHHHHHHHHCCeEEEec--
Confidence 3444556554554544 445788888888877532211221 12445555554321 1 112333 33 344321
Q ss_pred CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHH
Q 041549 169 GGVYVIRCSIGTTLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 169 ~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~ 200 (218)
+ .++|+++. ..+|++|||++++.+++...
T Consensus 397 -~-~~l~~~pp-l~~t~~~id~~~~~l~~~l~ 425 (427)
T TIGR00508 397 -G-KLIYVMPP-YIITTEQLQKLTAALIEALH 425 (427)
T ss_pred -C-CEEEEECC-CCCCHHHHHHHHHHHHHHHh
Confidence 2 36999884 57889999999999988764
No 243
>PRK06107 aspartate aminotransferase; Provisional
Probab=85.34 E-value=15 Score=32.77 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEE-Eec-------CC-----Ccch-HHHh-hc--eeecce
Q 041549 104 GYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCF-RLK-------PK-----RESD-GSEL-NQ--LSLTQA 166 (218)
Q Consensus 104 G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~F-r~~-------~~-----~~~~-~~~L-n~--~~vs~~ 166 (218)
|..-+++..+...+..+.+.+.|++++++.+. +|..+..+| ++. +. +... +..+ .+ +.+.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~-~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg 367 (402)
T PRK06107 289 DQSFVTESVAVYKQRRDYALALLNAIPGLSCL-VPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQG 367 (402)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-CCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEEEeCc
Confidence 33334455555566777788888887787664 455665444 331 11 1111 2233 33 333322
Q ss_pred -EECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 167 -TLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 167 -~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
..+...++|++++. +++++++.++.|.+...++
T Consensus 368 ~~Fg~~~~iRis~~~---~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 368 TAYGLSPYFRLSIAT---SLETLEEACARIERAVAAL 401 (402)
T ss_pred cccCCCCeEEEEeCC---CHHHHHHHHHHHHHHHHhc
Confidence 12224589999974 4889999998888766543
No 244
>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=85.12 E-value=3.9 Score=37.48 Aligned_cols=96 Identities=14% Similarity=0.053 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc-chH-HHhhc---eeec----c-eEECCEEE
Q 041549 104 GYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE-SDG-SELNQ---LSLT----Q-ATLGGVYV 173 (218)
Q Consensus 104 G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~-~~~-~~Ln~---~~vs----~-~~~~g~~~ 173 (218)
|.++-++.+++..+.+++++..+++. +|.+....++++|-.-+.+... ... ..+-+ +.+. . ....+ .
T Consensus 399 gt~~g~~k~~~l~~ns~yfr~~l~~~-gfivyG~~dSpVvplll~~~~k~~~f~r~~l~~nigvVvvgfPatpl~e~--r 475 (519)
T KOG1357|consen 399 GTNRGRQKIERLAENSRYFRWELQKM-GFIVYGNNDSPVVPLLLYGPAKIVAFSREMLERNIGVVVVGFPATPLLES--R 475 (519)
T ss_pred cccHHHHHHHHHHhhhHHHHHhhhcC-cEEEecCCCCCcceeeecCcccccHHHHHHHhcCceEEEEeCCCchHHHh--H
Confidence 67788899999999999999999996 9999987666665444433321 112 23322 1111 1 11122 2
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 174 IRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 174 lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
.|+|.. -..+.++++.+++.+.+.+++..
T Consensus 476 ~R~c~S-a~ht~e~ld~~l~~i~~~g~~~~ 504 (519)
T KOG1357|consen 476 ARFCLS-ASHTKEDLDRALEVIDRVGDEDG 504 (519)
T ss_pred HHhhhc-ccccHHHHHHHHHHHhhhchhhc
Confidence 688875 68889999999999999986654
No 245
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=85.11 E-value=14 Score=33.72 Aligned_cols=151 Identities=9% Similarity=0.019 Sum_probs=79.5
Q ss_pred CCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHHHH
Q 041549 22 ADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIR 101 (218)
Q Consensus 22 aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~l~ 101 (218)
.|-++ .=|-+..-+..|+++.+++ . +.+. +.. .. . |.. +-+......-.+|+
T Consensus 268 PDiv~--~gK~l~~G~Pigav~~~~~-~--~~~~--~~~--~~----------------~--T~~-gnpla~aaa~a~L~ 319 (442)
T TIGR00709 268 PDFVV--MSKAVGGGLPLAVLLIAPE-F--DAWQ--PAG--HT----------------G--TFR-GNQLAMVTGTEALN 319 (442)
T ss_pred CcEEE--EcccccCCcccEEEEEchH-H--hccC--CCc--CC----------------C--CCC-cCHHHHHHHHHHHH
Confidence 57666 4687777688899998765 2 2321 100 00 0 111 11111222333556
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEecC--CCceeEEEEecCCC------------cchHHH-----hhce
Q 041549 102 KHGYSGLMYHIRSDVNMAKRFEAMVAKD-ERFETVEP--RKCALVCFRLKPKR------------ESDGSE-----LNQL 161 (218)
Q Consensus 102 ~~G~~g~~~~i~~~~~la~~l~~~L~~~-~~~el~~~--~~~~iV~Fr~~~~~------------~~~~~~-----Ln~~ 161 (218)
.+-.+++.+.+ .++.++|.+.|+++ ....++.+ ....++++-+.... .+.... +++.
T Consensus 320 ~i~~~~l~~~~---~~~g~~l~~~L~~l~~~~~~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 396 (442)
T TIGR00709 320 YWKDDNLAQNA---QERGERITSFLDDMIKEHPCIGNVRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENG 396 (442)
T ss_pred HHHhcCHHHHH---HHHHHHHHHHHHHHHHhCCCeeeeeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCC
Confidence 66566655544 46777777777653 12222222 12233444442210 011122 2233
Q ss_pred -eecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 041549 162 -SLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLL 205 (218)
Q Consensus 162 -~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~ 205 (218)
++..... +..+||+.|. ...|++||+++++.+++...++.++
T Consensus 397 vl~~~~~~-~~~~l~~~Pp-l~it~~ei~~~~~~l~~~l~~~~~~ 439 (442)
T TIGR00709 397 LLLETGGR-EGEVFRLLCP-ITIDQEECEEGISRFKQAVEEALAE 439 (442)
T ss_pred eEEeecCC-CCCEEEEECC-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3322111 2368999985 6899999999999999998877554
No 246
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=85.05 E-value=16 Score=31.86 Aligned_cols=88 Identities=10% Similarity=0.025 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc-eeecceEECCEEEEEEecCCCCCcHHH
Q 041549 109 MYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ-LSLTQATLGGVYVIRCSIGTTLTQDRH 187 (218)
Q Consensus 109 ~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~-~~vs~~~~~g~~~lR~~~~n~~tt~~d 187 (218)
++..+...+..+++.+.|++. ++++.. ....+.++.. ...+..+.|.+ +.+.. ......++|+++. .+.++
T Consensus 248 ~~~~~~~~~~r~~l~~~L~~~-g~~~~~--~~~f~~~~~~-~~~~l~~~l~~~GI~vr-~~~~~~~lRisi~---~~~~e 319 (339)
T PRK06959 248 AAMRERLAADGARLAALLRAH-GFAVHA--TPLFSWTDDP-RAAALHAALARRGIWTR-YFAPPPSVRFGLP---ADEAE 319 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCccC--cceEEEEeCC-CHHHHHHHHHhCCeEEE-ECCCCCeEEEECC---CCHHH
Confidence 334445555778888899886 776542 2233334432 22233344444 32222 2233458999973 35679
Q ss_pred HHHHHHHHHHHHHHHHh
Q 041549 188 IDDLRKLIQEKADRLLL 204 (218)
Q Consensus 188 i~~l~~~l~~~~~~~~~ 204 (218)
++++++.|+++...+.+
T Consensus 320 ~~~l~~al~~~~~~~~~ 336 (339)
T PRK06959 320 WQRLEDALAECVPTLAA 336 (339)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999988776654
No 247
>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]
Probab=84.82 E-value=8.7 Score=33.37 Aligned_cols=165 Identities=12% Similarity=0.084 Sum_probs=92.0
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCC-CCCCCCCCCccCCcCccccCCCCCchhHHH
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPA-SSTSTNVAPVIDYKDWQIALSRRFKALKLW 97 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~-~~~~~~~~~~~~~~~~tl~~sR~~~al~~w 97 (218)
+..-+-|.+.++|-. +|.|..++++|+.-+ .......|.-+....-. .. +-++ |+++ |..-..=
T Consensus 193 vsk~gvi~aGAQKN~-G~aG~Tvvivr~dll-g~~~~~tP~v~dyk~~~~Nn------SlyN----TpP~---f~iy~~~ 257 (370)
T KOG2790|consen 193 VSKFGVIFAGAQKNV-GPAGVTVVIVRKDLL-GNALDITPSVLDYKIMDKNN------SLYN----TPPC---FGIYVMG 257 (370)
T ss_pred chhcceEEecccccc-CccccEEEEEehhhh-cccccCCccccceeeecccc------cccc----CCCe---eeeeehh
Confidence 344455666677754 488889999998754 34444443222111100 00 0111 2332 1111111
Q ss_pred HHHHHh-cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe-cCC---CceeEEEEecCCCcchHHHhhc----eeecceEE
Q 041549 98 TVIRKH-GYSGLMYHIRSDVNMAKRFEAMVAKDERFETV-EPR---KCALVCFRLKPKRESDGSELNQ----LSLTQATL 168 (218)
Q Consensus 98 ~~l~~~-G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~-~~~---~~~iV~Fr~~~~~~~~~~~Ln~----~~vs~~~~ 168 (218)
+.++.+ -..|++++-....+-++-+.+.|.+..+|-.. .+| ...-|+||..+. .-+...|.. .++..-..
T Consensus 258 Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~s~gfy~cpVe~~~RS~MNV~Fri~~d-~Le~eFLkeA~~~~mv~LKGh 336 (370)
T KOG2790|consen 258 LVFEWILEKGGLAAMEKLNQEKSKLLYDAIDNSNGFYRCPVEPSVRSRMNVPFRIEKD-ELEAEFLKEAAKEHMVQLKGH 336 (370)
T ss_pred hHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCCeEEcccchhhhhhcccceeecch-HHHHHHHHHHHHhhhhccccc
Confidence 233333 23456666667778999999999998887543 343 335689999743 211222322 23322112
Q ss_pred CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHH
Q 041549 169 GGVYVIRCSIGTTLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 169 ~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~ 200 (218)
+..+-+|+|+=| ..+-++++.|++.+++...
T Consensus 337 RSVGGiRASlYN-Aisv~~~q~L~~~m~~F~k 367 (370)
T KOG2790|consen 337 RSVGGIRASLYN-AISVEEVQKLAAFMKEFQK 367 (370)
T ss_pred cccccchhhhhc-cccHHHHHHHHHHHHHHHH
Confidence 223459999866 7889999999999887653
No 248
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=84.65 E-value=8.9 Score=35.22 Aligned_cols=33 Identities=9% Similarity=0.007 Sum_probs=27.7
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
..++|+.|. ...+++|||++++.+++...++.+
T Consensus 425 ~~~l~~~Pp-l~it~~eid~~~~~l~~~l~~~~~ 457 (459)
T PRK06931 425 GNVVRLLPP-LLITQAECEEFIDRFEQALLAAVK 457 (459)
T ss_pred CCEEEEECC-CCcCHHHHHHHHHHHHHHHHHHHh
Confidence 367999995 688999999999999998877654
No 249
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=84.46 E-value=13 Score=33.51 Aligned_cols=151 Identities=14% Similarity=0.079 Sum_probs=93.8
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHH
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTV 99 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~ 99 (218)
.+.|-+.=..=|=+.+|.|=+++...++..+ ...+ ..|-+..+. ...+.+...
T Consensus 212 GRvda~vqS~dkNF~VPvGgai~As~~~~~i-~~vs--~~YpGRas~------------------------sp~ld~~it 264 (389)
T PF05889_consen 212 GRVDAFVQSTDKNFMVPVGGAIMASFDPSGI-LAVS--KEYPGRASA------------------------SPSLDLFIT 264 (389)
T ss_dssp STCSEEEEEHHHHHCEESSHEEEEESSHHHH-HHHH--HTSHSHBTS------------------------HHHHHHHHH
T ss_pred CCcceeeeecCCCEEecCCCcEEEecCHHHH-HHHH--HHhhhhhhc------------------------ccchHHHHH
Confidence 6889999999999999999888887766544 2222 234433221 013567778
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhcC---CCeEEecCC-CceeEEEEecCCCc---chH----HHhhceeecceE-
Q 041549 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAKD---ERFETVEPR-KCALVCFRLKPKRE---SDG----SELNQLSLTQAT- 167 (218)
Q Consensus 100 l~~~G~~g~~~~i~~~~~la~~l~~~L~~~---~~~el~~~~-~~~iV~Fr~~~~~~---~~~----~~Ln~~~vs~~~- 167 (218)
+..+|..|+++.+....++-.++.++|++. -+-.++..| ..-.++|....-+. ... ..|-..-|+.++
T Consensus 265 Ll~LG~~g~~~ll~~r~~~f~~l~erl~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~Rv 344 (389)
T PF05889_consen 265 LLSLGCTGYGALLKERKASFPYLKERLKKWAEEVGERLLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRV 344 (389)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEE
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCeeEEEECccchhhccchhhhHHHHHHhCCccccee
Confidence 899999999999999999999988888762 144444433 33346676654322 111 223221121111
Q ss_pred --------------ECCEEEEEEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 168 --------------LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 168 --------------~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
+.. .+|-++.. .-++++|||.+++.|+++.
T Consensus 345 V~~~~~~~tsh~~~yp~-~Ylt~Asa-iG~~~eevd~~v~rL~k~i 388 (389)
T PF05889_consen 345 VTPGGKKQTSHSSNYPC-PYLTAASA-IGMTREEVDYFVKRLDKII 388 (389)
T ss_dssp EETSSCEEETTSS--SS-SEEEEEE--TT--HHHHHHHHHHHHHHH
T ss_pred eccCCCcccccCCCCch-HHHHHHHH-hCCCHHHHHHHHHHHHHHh
Confidence 111 46777443 6899999999999999874
No 250
>PRK09265 aminotransferase AlaT; Validated
Probab=84.42 E-value=13 Score=33.01 Aligned_cols=83 Identities=18% Similarity=0.053 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecCCCcee-EEEEecCC-----Cc-chH-HHhhc--eeecceE-E--CCEEEEEEecCC
Q 041549 114 SDVNMAKRFEAMVAKDERFETVEPRKCAL-VCFRLKPK-----RE-SDG-SELNQ--LSLTQAT-L--GGVYVIRCSIGT 180 (218)
Q Consensus 114 ~~~~la~~l~~~L~~~~~~el~~~~~~~i-V~Fr~~~~-----~~-~~~-~~Ln~--~~vs~~~-~--~g~~~lR~~~~n 180 (218)
+..+..+.+.+.|++.+++++.. |..+. +..++++. +. +.+ ..+.+ +.+.+.. . .+..++|+++.
T Consensus 305 ~~~~~r~~~~~~L~~~~~~~~~~-p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~~- 382 (404)
T PRK09265 305 RLYEQRDRAWELLNAIPGVSCVK-PKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVTL- 382 (404)
T ss_pred HHHHHHHHHHHHHhcCCCCcccC-CCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEeC-
Confidence 44456677888888887877654 44444 44455432 11 112 23333 3443322 1 23468999984
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 041549 181 TLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 181 ~~tt~~di~~l~~~l~~~~~ 200 (218)
.+++++++.++.|.+..+
T Consensus 383 --~~~e~l~~~l~rl~~~l~ 400 (404)
T PRK09265 383 --PRVDDLEEAIGRIGRFLS 400 (404)
T ss_pred --CCHHHHHHHHHHHHHHHH
Confidence 568899988888876554
No 251
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=84.10 E-value=16 Score=33.85 Aligned_cols=83 Identities=11% Similarity=0.065 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecCCCceeEEE-EecCC-----Cc-chH-HHhhc--eeecce-EE--CCEEEEEEecCC
Q 041549 114 SDVNMAKRFEAMVAKDERFETVEPRKCALVCF-RLKPK-----RE-SDG-SELNQ--LSLTQA-TL--GGVYVIRCSIGT 180 (218)
Q Consensus 114 ~~~~la~~l~~~L~~~~~~el~~~~~~~iV~F-r~~~~-----~~-~~~-~~Ln~--~~vs~~-~~--~g~~~lR~~~~n 180 (218)
+..+..+++.+.|+++|++++. +|..+..+| ++.+. +. +.+ ..|.+ +.+.+. .. .+..++|+++.
T Consensus 418 ~~~~~r~~l~~~L~~~~g~~~~-~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~- 495 (517)
T PRK13355 418 RVYEQRELVYNALNAIPGISAV-KPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL- 495 (517)
T ss_pred HHHHHHHHHHHHHhcCCCcccC-CCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC-
Confidence 3455678888999988888765 567777777 55431 11 122 33444 333332 22 24578999984
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 041549 181 TLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 181 ~~tt~~di~~l~~~l~~~~~ 200 (218)
.++++|++.++.|.+...
T Consensus 496 --~~~~~l~~a~~rl~~~~~ 513 (517)
T PRK13355 496 --PRLEDLEDAMDRLADFFS 513 (517)
T ss_pred --CCHHHHHHHHHHHHHHHH
Confidence 567888888777776654
No 252
>PRK06917 hypothetical protein; Provisional
Probab=84.04 E-value=12 Score=34.28 Aligned_cols=33 Identities=6% Similarity=0.099 Sum_probs=27.8
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
..++|+++. ...|++|||++++.+.+...++..
T Consensus 408 ~~~i~l~Pp-l~it~~eid~~~~~l~~~l~~~~~ 440 (447)
T PRK06917 408 GDAVIIAPP-MTITYSELDELLSIFAKSVEEMMQ 440 (447)
T ss_pred CCEEEEECC-CcCCHHHHHHHHHHHHHHHHHHHH
Confidence 358999884 579999999999999999888743
No 253
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=83.96 E-value=3.5 Score=37.30 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=41.0
Q ss_pred hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-C-----C------------CceeEEEEecCC
Q 041549 94 LKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVE-P-----R------------KCALVCFRLKPK 150 (218)
Q Consensus 94 l~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~-~-----~------------~~~iV~Fr~~~~ 150 (218)
...|+. ..|.+.+..++++..+.+..+++.|.++|++..+. | | -.++++|.+++.
T Consensus 272 ~~a~~~--~~~l~tl~~R~~~~~~~a~~la~~L~~~~~V~~V~yP~l~~~~~~~~~~~~~~~g~g~~~s~~l~~~ 344 (418)
T TIGR01326 272 FNAFLL--LQGLETLSLRMERHVENALKVAEFLEAHPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKGG 344 (418)
T ss_pred HHHHHH--HCCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhccCCCcceEEEEecCC
Confidence 344543 45778888889988899999999999999987653 2 1 135899999753
No 254
>PLN02187 rooty/superroot1
Probab=83.60 E-value=24 Score=32.39 Aligned_cols=96 Identities=10% Similarity=0.021 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcee-EEEEecCC------Cc-chHHHh-hc--eeecce-EECCEEEE
Q 041549 107 GLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCAL-VCFRLKPK------RE-SDGSEL-NQ--LSLTQA-TLGGVYVI 174 (218)
Q Consensus 107 g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~i-V~Fr~~~~------~~-~~~~~L-n~--~~vs~~-~~~g~~~l 174 (218)
-+++..+...+..+.+.+.|++++.+.....|..+. +-+++... +. +....+ .+ +.+.+. ......++
T Consensus 335 ~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~~~~i 414 (462)
T PLN02187 335 FFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDALGLKNWM 414 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECccccCCCCeE
Confidence 345555555667778888998876554344455443 33344211 11 222233 33 333332 23335689
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 041549 175 RCSIGTTLTQDRHIDDLRKLIQEKADRLLLL 205 (218)
Q Consensus 175 R~~~~n~~tt~~di~~l~~~l~~~~~~~~~~ 205 (218)
|++++. .++.+++.++.|.+...+....
T Consensus 415 Ris~~~---~~e~l~~al~rL~~~l~~~~~~ 442 (462)
T PLN02187 415 RITIGV---EAHMLEDALERLKGFCTRHAKK 442 (462)
T ss_pred EEEeCC---CHHHHHHHHHHHHHHHHHhhhc
Confidence 999964 4788888888888877655433
No 255
>PRK08175 aminotransferase; Validated
Probab=83.32 E-value=9.4 Score=33.89 Aligned_cols=89 Identities=9% Similarity=0.034 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCC----cc-hHHHh-hc--eeecceE-E--CCEEEEEE
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKR----ES-DGSEL-NQ--LSLTQAT-L--GGVYVIRC 176 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~----~~-~~~~L-n~--~~vs~~~-~--~g~~~lR~ 176 (218)
+++..+...+..+++.+.|++. ++.+..|.....+.+++++.- .. ...++ .+ +.+.+.. . .+..++|+
T Consensus 289 ~~~~~~~~~~~~~~~~~~L~~~-~~~~~~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~~~~~~lRi 367 (395)
T PRK08175 289 VRDIAEQYKRRRDVLVKGLHEA-GWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRF 367 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCcccCCCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCcCCCCeEEE
Confidence 3344444446677888888887 676654445567777776431 12 22333 33 3343321 1 23458999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHHHH
Q 041549 177 SIGTTLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 177 ~~~n~~tt~~di~~l~~~l~~~~~ 200 (218)
++. .+++.+.+.++.|.+...
T Consensus 368 s~~---~~~~~~~~al~~l~~~l~ 388 (395)
T PRK08175 368 ALI---ENRDRIRQAIRGIKAMFR 388 (395)
T ss_pred EeC---CCHHHHHHHHHHHHHHHH
Confidence 985 357777777777766653
No 256
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=83.24 E-value=6.9 Score=35.26 Aligned_cols=89 Identities=10% Similarity=0.109 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecce-EE---CCEEEEEEecCCC
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQA-TL---GGVYVIRCSIGTT 181 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~-~~---~g~~~lR~~~~n~ 181 (218)
+++..+...+..+.+.+.|++. ++++..|.....+.++++..+.+....+.+ +.+.+. .. .+..++|++++.
T Consensus 335 l~~~~~~~~~~r~~~~~~L~~~-~~~~~~p~gg~f~~~~l~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iRis~~~- 412 (431)
T PRK15481 335 LAQARLFYAQRRQKLARALQQY-GIAIPSPGDGLNLWLPLDTDSQATALTLAKSGWLVREGEAFGVSAPSHGLRITLST- 412 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCccccCCCeEEEEEECCCCHHHHHHHHHHCCcEEecCCccccCCCCCeEEEEcCC-
Confidence 3444455556667788888876 776555545555666664322233344433 223221 11 123589999964
Q ss_pred CCcHHHHHHHHHHHHHHH
Q 041549 182 LTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 182 ~tt~~di~~l~~~l~~~~ 199 (218)
.+++++++.++.|.++.
T Consensus 413 -~~~~~i~~~~~~l~~~~ 429 (431)
T PRK15481 413 -LNDAEINRLAADLHQAL 429 (431)
T ss_pred -CChHHHHHHHHHHHHHh
Confidence 46899999999887764
No 257
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=81.79 E-value=20 Score=32.49 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=27.0
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
..+||+++. ..+++++|+++++.|.+...++.
T Consensus 400 ~~~lRl~p~-~~~t~~~i~~~~~~l~~~l~~~~ 431 (433)
T PRK08117 400 GNVLRMIPP-LTVTKEEIDEGLDILDEALTEYE 431 (433)
T ss_pred CCEEEEeCC-ccCCHHHHHHHHHHHHHHHHHHh
Confidence 368999984 68899999999999998877663
No 258
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=81.65 E-value=29 Score=31.21 Aligned_cols=158 Identities=16% Similarity=0.205 Sum_probs=86.1
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcc--hhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHH
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSF--LVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKL 96 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~--l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~ 96 (218)
++.||-++.+.-|=..+++| |+|.++|++. +....... -+-.. |- ..|+ +-.++.+..
T Consensus 256 ~sYaD~~~mS~KKD~lvnmG-Gfl~~~D~~~fDvy~~~~~~--~V~~e-----------G~---~tYG---gl~Grdmea 315 (471)
T COG3033 256 YSYADGCTMSAKKDGLVNMG-GFLCFKDDSFFDVYEECRTL--VVVQE-----------GF---PTYG---GLAGRDMEA 315 (471)
T ss_pred Hhhhhhheeeccccceeccc-cEEEecCccHHHHHHHHHhh--eEeec-----------cc---cccC---cccchhHHH
Confidence 57899999999999999998 9999999963 21111110 00000 11 1221 112233332
Q ss_pred HH-HHHH-hcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEe---cCC---Cc----chHHHhhc----
Q 041549 97 WT-VIRK-HGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRL---KPK---RE----SDGSELNQ---- 160 (218)
Q Consensus 97 w~-~l~~-~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~---~~~---~~----~~~~~Ln~---- 160 (218)
.+ .|+. .-.+ .+++.++..+||.+.|.+. |+.++.|....-|-.-. -|. +. ...-+|-+
T Consensus 316 lAvGL~e~~~~~----yl~~Rv~Qv~YL~~~l~~~-GVpi~~paGGHavfvda~~~lphip~eqFpaqala~ely~e~Gi 390 (471)
T COG3033 316 LAVGLREGVNFD----YLAHRVAQVQYLADGLEEA-GVPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGI 390 (471)
T ss_pred HHHHHHHhcCcH----HHHHHHHHHHHHHHHHHhc-CCeeEecCCCceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCe
Confidence 22 2221 2223 3444457889999999996 88877765444433221 111 10 11122222
Q ss_pred -----eeecce-EEC-C------EEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 161 -----LSLTQA-TLG-G------VYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 161 -----~~vs~~-~~~-g------~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
+-++-. ..+ | -..+|+++.--.-|.+|+|.+++.++++-++
T Consensus 391 RavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~ 444 (471)
T COG3033 391 RAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKEN 444 (471)
T ss_pred eeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHhc
Confidence 111110 001 1 1469999854455788999999998887654
No 259
>PRK07505 hypothetical protein; Provisional
Probab=81.57 E-value=12 Score=33.30 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=25.4
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
..+||+++. ...+++|++++++.|+++..+
T Consensus 370 ~~~lRi~~~-~~~t~eei~~~~~~l~~~l~~ 399 (402)
T PRK07505 370 RAGLRIMFR-ASHTNDEIKRLCSLLKEILDE 399 (402)
T ss_pred CceEEEecC-ccCCHHHHHHHHHHHHHHHHh
Confidence 368999995 689999999999999887644
No 260
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=81.50 E-value=16 Score=32.71 Aligned_cols=93 Identities=11% Similarity=0.012 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCce-eEEEEecCC------Cc-chHHHh-hc--eeecce-EECCEEE
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCA-LVCFRLKPK------RE-SDGSEL-NQ--LSLTQA-TLGGVYV 173 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~-iV~Fr~~~~------~~-~~~~~L-n~--~~vs~~-~~~g~~~ 173 (218)
+-+++.++...+..+++.+.|++.+......+|..+ .+..++++. +. +.+..+ .+ +.+.+. ......+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~ 379 (409)
T PLN00143 300 DFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGLKNW 379 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCCCCe
Confidence 445666666666677788888887554334445444 455566421 11 222223 33 334332 2233568
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 174 IRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 174 lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
+|++++. .++++++.++.|.+..++
T Consensus 380 iRi~~~~---~~~~l~~al~rl~~~l~~ 404 (409)
T PLN00143 380 LRITFAV---EQSSLEDGLGRLKSFCGR 404 (409)
T ss_pred EEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence 9999963 478888888888776543
No 261
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=81.33 E-value=12 Score=32.84 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceEE-CCEEEEEEecCCCC
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQATL-GGVYVIRCSIGTTL 182 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~~-~g~~~lR~~~~n~~ 182 (218)
+-+++.++...+..+++.+.|++. ++++ .++..+.+-++....+.+..+.+.+ +.+.+... ....++|++++
T Consensus 279 ~~~~~~~~~~~~~r~~l~~~L~~~-g~~~-~p~~g~fl~~~~~~~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi~~~--- 353 (371)
T PRK05166 279 EHLAKGVALALAERERLKKELAEM-GYRI-APSRANFLFFDARRPASAVAEALLRQGVIVKPWKQPGFETFIRVSIG--- 353 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-cCee-CCCcCCEEEEeCCCCHHHHHHHHHHCCeEEecCCCCCCCCeEEEEcC---
Confidence 345555666667778889999987 7764 4555555555543222222344433 33333211 22568999986
Q ss_pred CcHHHHHHHHHHHHHH
Q 041549 183 TQDRHIDDLRKLIQEK 198 (218)
Q Consensus 183 tt~~di~~l~~~l~~~ 198 (218)
+.++.+++.+.|+.+
T Consensus 354 -~~~~~~~l~~~l~~i 368 (371)
T PRK05166 354 -SPEENDHFVAALDKV 368 (371)
T ss_pred -CHHHHHHHHHHHHHH
Confidence 366678888887765
No 262
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=81.20 E-value=14 Score=33.93 Aligned_cols=103 Identities=9% Similarity=0.033 Sum_probs=57.9
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEecC--CCceeEEEEecCC----CcchHHH-----hhceeecc
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKD-ERFETVEP--RKCALVCFRLKPK----RESDGSE-----LNQLSLTQ 165 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~-~~~el~~~--~~~~iV~Fr~~~~----~~~~~~~-----Ln~~~vs~ 165 (218)
++|+.+-.+.+.+.+ .++.++|.+.|++. .++.++.+ ....++.+.+.+. +.+.... +++..+..
T Consensus 332 a~l~~l~~~~l~~~~---~~~g~~l~~~L~~l~~~~~~~~~VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~ 408 (457)
T PRK05639 332 ATLEIIEEENLLKNA---LKVGEFIKKRLLEMKESFEVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILP 408 (457)
T ss_pred HHHHHHHHccHHHHH---HHHHHHHHHHHHHHHHhCCCEEeeccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEe
Confidence 356666666554444 46888888888763 22333322 1223344444321 1111122 23333322
Q ss_pred eEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 166 ATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 166 ~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
..-.+..+||++|. ...|++|||++++.+++...++.+
T Consensus 409 ~~g~~~~~lr~~Pp-l~it~~~id~~~~~l~~~l~~~~~ 446 (457)
T PRK05639 409 SYGMFGNVIRITPP-LVITKEIAEKGLEIMERAIKDALA 446 (457)
T ss_pred ecCCCCCEEEEeCC-CccCHHHHHHHHHHHHHHHHHHHH
Confidence 21112368999995 689999999999999999877643
No 263
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=81.01 E-value=24 Score=31.41 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhcCC-CeEEecC-CCce-eEEEEecCCC---c-chHHHh-hc-eeecceEECCEEEEEEecCCCCC
Q 041549 113 RSDVNMAKRFEAMVAKDE-RFETVEP-RKCA-LVCFRLKPKR---E-SDGSEL-NQ-LSLTQATLGGVYVIRCSIGTTLT 183 (218)
Q Consensus 113 ~~~~~la~~l~~~L~~~~-~~el~~~-~~~~-iV~Fr~~~~~---~-~~~~~L-n~-~~vs~~~~~g~~~lR~~~~n~~t 183 (218)
++..+..+++.+.|++.. .+.++.+ +..+ ++.+.+.+.. . +....+ ++ +++.+ .|..++|+++. ...
T Consensus 307 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~---~g~~~lRl~~~-~~~ 382 (403)
T PRK05093 307 EGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLV---AGPDVLRFAPS-LVI 382 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcchhHHHHHHHHHHHCCeEEec---CCCCEEEEeCC-CCC
Confidence 344567788888887741 1222222 2223 3444443321 1 112233 23 44443 24468999985 456
Q ss_pred cHHHHHHHHHHHHHHHHHH
Q 041549 184 QDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 184 t~~di~~l~~~l~~~~~~~ 202 (218)
++++|+++++.|.+...++
T Consensus 383 ~~~~i~~~~~~l~~~l~~~ 401 (403)
T PRK05093 383 EEADIDEGLARFEKAVAKV 401 (403)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 8999999999999887654
No 264
>PRK03321 putative aminotransferase; Provisional
Probab=80.62 E-value=22 Score=30.86 Aligned_cols=85 Identities=12% Similarity=0.146 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceEECCEEEEEEecCCCC
Q 041549 105 YSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQATLGGVYVIRCSIGTTL 182 (218)
Q Consensus 105 ~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~~~g~~~lR~~~~n~~ 182 (218)
.+.+.+.++...+..+++.+.|++. ++.+. ++..+.+.++......+..+.|.+ +.+.+ .+ ...||+++
T Consensus 262 ~~~~~~~~~~~~~~r~~~~~~L~~~-~~~~~-~~~g~~i~i~l~~~~~~~~~~l~~~gI~v~~--~~-~~~iRi~~---- 332 (352)
T PRK03321 262 EDELLERVDAVVAERDRVRAALRAA-GWTVP-PSQANFVWLPLGERTADFAAAAAEAGVVVRP--FA-GEGVRVTI---- 332 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-CCccC-CCCCCEEEEeCCCCHHHHHHHHHHCCEEEEc--cC-CCcEEEee----
Confidence 3445566666666677788888875 66643 345555556553221223344544 33332 22 34599986
Q ss_pred CcHHHHHHHHHHHHHH
Q 041549 183 TQDRHIDDLRKLIQEK 198 (218)
Q Consensus 183 tt~~di~~l~~~l~~~ 198 (218)
.+.+++++++++|++.
T Consensus 333 ~~~~~~~~~~~al~~~ 348 (352)
T PRK03321 333 GAPEENDAFLRAARAW 348 (352)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4688999999999875
No 265
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=80.53 E-value=9.7 Score=34.68 Aligned_cols=99 Identities=9% Similarity=0.026 Sum_probs=53.7
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEec--CCCceeEEEEecCC-----CcchHHHh-----hc-eee
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDE-RFETVE--PRKCALVCFRLKPK-----RESDGSEL-----NQ-LSL 163 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~-~~el~~--~~~~~iV~Fr~~~~-----~~~~~~~L-----n~-~~v 163 (218)
.+|+.+-.+.+.+.+ .++.++|.+.|++.. ...++. .....++.+.+.+. +.+....+ .+ .++
T Consensus 330 a~L~~~~~~~l~~~~---~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~ 406 (443)
T PRK06058 330 AAIETIEEDDLVARA---RQIEALMTDRLRALAAEDDRIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIV 406 (443)
T ss_pred HHHHHHHHcCHHHHH---HHHHHHHHHHHHHHHhhCCcEEeeeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEE
Confidence 345555555554444 467788888887631 123322 12333444444321 11112222 22 334
Q ss_pred cceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 164 TQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 164 s~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
.+.. ....+||+.|. ...|++|||++++.|++...+
T Consensus 407 ~~~~-~~~~~lr~~Pp-l~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 407 LTCG-TYGNVIRLLPP-LVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred eccC-CCCCEEEEECC-CccCHHHHHHHHHHHHHHHHh
Confidence 3211 11258999985 689999999999999887654
No 266
>PRK07777 aminotransferase; Validated
Probab=80.12 E-value=41 Score=29.60 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCce-eEEEEecC--C-Cc-chHHHh-hc--eeecceE-E-----CC
Q 041549 105 YSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCA-LVCFRLKP--K-RE-SDGSEL-NQ--LSLTQAT-L-----GG 170 (218)
Q Consensus 105 ~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~-iV~Fr~~~--~-~~-~~~~~L-n~--~~vs~~~-~-----~g 170 (218)
.+-+++..+..-+..+++.+.|++. ++++.. |..+ .+.+++++ . +. +..+.| .+ +.+.+.. . .+
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~ 358 (387)
T PRK07777 281 DAWVAALRDSLQAKRDRLAAGLAEA-GFEVHD-SAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPADAW 358 (387)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhC-CCCccC-CCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCcCC
Confidence 3334455555567888888999886 777654 4444 34446542 1 21 234455 23 3443321 1 12
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
..++|+++.. .++++++.++.|.++.
T Consensus 359 ~~~~Ri~~~~---~~~~l~~~l~~l~~~~ 384 (387)
T PRK07777 359 NHLVRFAFCK---RDDTLDEAIRRLRALR 384 (387)
T ss_pred CCeEEEEecC---CHHHHHHHHHHHHHHh
Confidence 3589999853 5888888888887653
No 267
>PLN00144 acetylornithine transaminase
Probab=80.03 E-value=42 Score=29.88 Aligned_cols=99 Identities=12% Similarity=0.148 Sum_probs=51.7
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHH----HhcCCCeEEecCCCceeEEEEecCCCcchHHH-hhc-eeecceEEC
Q 041549 96 LWTVIRKHGYSGLMYHIRSDVNMAKRFEAM----VAKDERFETVEPRKCALVCFRLKPKRESDGSE-LNQ-LSLTQATLG 169 (218)
Q Consensus 96 ~w~~l~~~G~~g~~~~i~~~~~la~~l~~~----L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~-Ln~-~~vs~~~~~ 169 (218)
..++|+.+-.+.+.++++ ++.+++.+. +++.|.+.-+.. ...++.+.+.......... +++ ..+.+. .
T Consensus 276 a~a~l~~i~~~~~~~~~~---~~g~~l~~~l~~~~~~~~~~~~vrg-~G~~~~l~l~~~~~~~~~~~~~~Gv~i~~~--~ 349 (382)
T PLN00144 276 ALAVLDKISKPGFLASVA---KKGEYLRELLRRKLGGNPHVKEVRG-VGLLVGIQLDVPAGPLVDACRDSGLLVLTA--G 349 (382)
T ss_pred HHHHHHHHhhchHHHHHH---HHHHHHHHHHHHHHhhCCCceeeec-CceEEEEEecCccHHHHHHHHHCCeEEeec--C
Confidence 444556665556666665 344444444 444444322221 2223334442111122222 233 334332 1
Q ss_pred CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 170 GVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 170 g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
...+||+++. ...++++|++.++.|.+...+
T Consensus 350 ~~~~lrl~p~-~~~~~~~i~~~~~~l~~~l~~ 380 (382)
T PLN00144 350 KGDVVRLVPP-LVISEAELEQAVEILADCLPA 380 (382)
T ss_pred CCCEEEEeCC-CccCHHHHHHHHHHHHHHHHh
Confidence 1368999994 347799999999999887654
No 268
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=79.64 E-value=14 Score=32.31 Aligned_cols=83 Identities=8% Similarity=0.068 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEE-EEecCCCc-chHHHhhc--eeecceE-E--CCEEEEEEecCC
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVC-FRLKPKRE-SDGSELNQ--LSLTQAT-L--GGVYVIRCSIGT 180 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~-Fr~~~~~~-~~~~~Ln~--~~vs~~~-~--~g~~~lR~~~~n 180 (218)
+++..+...+..+.+.+.|++. ++.+.. |..++.. ... +.+. +..+.+.+ +.+.+.. . .+..++|+++..
T Consensus 274 ~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~~~~~~~~~~-~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~ 350 (364)
T PRK07865 274 VREQRERYARRRAVLRPALEAA-GFRVDH-SEAGLYLWATR-GEDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA 350 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCcccC-CCccEEEEEeC-CCCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC
Confidence 3444445556777788888875 776554 4455432 233 2222 22344434 3343322 1 135689999863
Q ss_pred CCCcHHHHHHHHHHHH
Q 041549 181 TLTQDRHIDDLRKLIQ 196 (218)
Q Consensus 181 ~~tt~~di~~l~~~l~ 196 (218)
+++++++.++.|.
T Consensus 351 ---~~~~~~~~~~~l~ 363 (364)
T PRK07865 351 ---TDERIAAAVERLA 363 (364)
T ss_pred ---CHHHHHHHHHHhh
Confidence 4799999888774
No 269
>PRK07483 hypothetical protein; Provisional
Probab=79.51 E-value=23 Score=32.31 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=28.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLL 205 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~ 205 (218)
.+||++|. ...+++|||++++.|++...++++.
T Consensus 409 ~~l~~~Pp-L~it~~eid~~~~~l~~~l~~~~~~ 441 (443)
T PRK07483 409 DHVLLAPP-FIITAAQIDEIVERLGDAIDAALAA 441 (443)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 57999985 5889999999999999998877653
No 270
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=78.96 E-value=22 Score=31.33 Aligned_cols=83 Identities=7% Similarity=0.155 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc-eeecceEECCEEEEEEecCCCCCcHHH
Q 041549 109 MYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ-LSLTQATLGGVYVIRCSIGTTLTQDRH 187 (218)
Q Consensus 109 ~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~-~~vs~~~~~g~~~lR~~~~n~~tt~~d 187 (218)
++..+...+..+++.+.+++. ++++. ++..+.+-+++. ...+..+.|.+ +.+... . ..++|+++.. .++
T Consensus 272 ~~~~~~~~~~r~~~~~~l~~~-g~~~~-~~~~nf~~~~~~-~~~~~~~~l~~~GI~Vr~-~--~~~iRis~~~----~~~ 341 (366)
T PRK01533 272 EEIVRVNTEGLRQYESFCKEN-EIPFY-QSQTNFIFLPVE-NGGEIYEACAHAGFIIRP-F--PNGVRITVGT----REQ 341 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCccC-CCcCcEEEEeCC-CHHHHHHHHHHCCcEEcc-C--CCceEEeCCC----HHH
Confidence 344444456667777777776 77754 467777777764 22233444544 332222 2 3579999863 689
Q ss_pred HHHHHHHHHHHHHH
Q 041549 188 IDDLRKLIQEKADR 201 (218)
Q Consensus 188 i~~l~~~l~~~~~~ 201 (218)
++.|+++|+++...
T Consensus 342 ~~~l~~al~~~~~~ 355 (366)
T PRK01533 342 NEGVISVLQQHFEN 355 (366)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999876433
No 271
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=78.83 E-value=20 Score=31.86 Aligned_cols=86 Identities=14% Similarity=0.053 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-Cc-chHHHhh-c--eeecceE---ECCEEEEEEecCC
Q 041549 109 MYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-RE-SDGSELN-Q--LSLTQAT---LGGVYVIRCSIGT 180 (218)
Q Consensus 109 ~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~~-~~~~~Ln-~--~~vs~~~---~~g~~~lR~~~~n 180 (218)
++.++...+..+++.+.|++. ++++..+...+.+.+++++. +. +....+- + +.+.+.. ..+..++|+++..
T Consensus 308 ~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~ 386 (402)
T TIGR03542 308 LEAISYYMENARILRKALEAA-GFKVYGGEHAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSGEGFVRFSAFG 386 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CceecCCCceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC
Confidence 334444456667788888885 67765443455677777542 22 2334432 3 3333321 1234689999743
Q ss_pred CCCcHHHHHHHHHHHHHH
Q 041549 181 TLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 181 ~~tt~~di~~l~~~l~~~ 198 (218)
+++++++.++.|.+.
T Consensus 387 ---~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 387 ---KRENIVEACERIKEA 401 (402)
T ss_pred ---CHHHHHHHHHHHHhh
Confidence 578888888777653
No 272
>PRK07678 aminotransferase; Validated
Probab=77.71 E-value=41 Score=30.78 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=25.4
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
..+||+++. ...|++|||++++.+++...++
T Consensus 420 ~~~lrl~Pp-l~it~~eid~~~~~l~~~l~~~ 450 (451)
T PRK07678 420 NNVLTLSPP-LVISSEEIAFIVGTLKTALERI 450 (451)
T ss_pred CCEEEEECC-CcCCHHHHHHHHHHHHHHHHhc
Confidence 367999985 5788999999999998876543
No 273
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=77.62 E-value=14 Score=33.59 Aligned_cols=98 Identities=7% Similarity=-0.063 Sum_probs=54.7
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceeEEEEecCCC-c-chHHHh-hceeecceEEC
Q 041549 95 KLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKCALVCFRLKPKR-E-SDGSEL-NQLSLTQATLG 169 (218)
Q Consensus 95 ~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~~iV~Fr~~~~~-~-~~~~~L-n~~~vs~~~~~ 169 (218)
....+|+.+-.+++.+.+ .++.++|.+.|++......+.+ ....++.+-+.... . ...+.+ ++..+... .
T Consensus 319 aa~a~L~~i~~~~~~~~~---~~~g~~l~~~l~~l~~~~~i~~vRg~Gl~~~ve~~~~~~~~~~~~~l~~~Gl~~~~--~ 393 (428)
T PRK07986 319 VANASLSLLESGDWQQQV---AAIEAQLREELAPLRDAPMVADVRVLGAIGVVETTRPVNMAALQRFFVEQGVWIRP--F 393 (428)
T ss_pred HHHHHHHHHHhCCHHHHH---HHHHHHHHHHHHHHhcCCCEEeEeccceEEEEEeCCcccHHHHHHHHHHCCcEEEe--c
Confidence 344566666555554444 4788888888876422222221 12234444443221 1 112233 33332221 1
Q ss_pred CEEEEEEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 170 GVYVIRCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 170 g~~~lR~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
| .+||++|. ...|++||+++++.|.+..
T Consensus 394 g-~~i~~~Pp-l~it~~ei~~~~~~l~~~l 421 (428)
T PRK07986 394 G-KLIYLMPP-YIILPEQLQRLTAAVNRAV 421 (428)
T ss_pred C-CEEEEeCC-CCCCHHHHHHHHHHHHHHH
Confidence 3 47999985 5899999999999998775
No 274
>PRK08068 transaminase; Reviewed
Probab=77.57 E-value=19 Score=31.83 Aligned_cols=87 Identities=10% Similarity=0.070 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcee-EEEEecCC-Cc-chHHHhh-c--eeecceE---ECCEEEEEE
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCAL-VCFRLKPK-RE-SDGSELN-Q--LSLTQAT---LGGVYVIRC 176 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~i-V~Fr~~~~-~~-~~~~~Ln-~--~~vs~~~---~~g~~~lR~ 176 (218)
+-+++.++...+..+.+.+.|++. ++.+. +|..+. +.+++.+. +. +....+. + ..+.+.. ..+..++|+
T Consensus 290 ~~~~~~~~~~~~~r~~~~~~L~~~-g~~~~-~~~g~~~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~iRi 367 (389)
T PRK08068 290 SCVAELVARYESRRNAFISACREI-GWEVD-APKGSFFAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGEHGEGYVRV 367 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCeeEEEEEECCCCCCHHHHHHHHHHhCCEEEecchHhCccCCCeEEE
Confidence 445556666667778888899886 77644 455554 55666542 22 2234443 2 3343321 123468999
Q ss_pred ecCCCCCcHHHHHHHHHHHHH
Q 041549 177 SIGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 177 ~~~n~~tt~~di~~l~~~l~~ 197 (218)
++.. .++.+.+.++.|.+
T Consensus 368 ~~~~---~~~~l~~al~~l~~ 385 (389)
T PRK08068 368 GLLT---DEERLREAVERIGK 385 (389)
T ss_pred EEcC---CHHHHHHHHHHHHH
Confidence 9953 35566666665554
No 275
>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]
Probab=76.95 E-value=31 Score=31.25 Aligned_cols=163 Identities=13% Similarity=0.128 Sum_probs=84.6
Q ss_pred cccccccCccccccccCCCCCCeeeeccc----------ccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCC
Q 041549 2 AYRSACICPEFRHYLNGVELADSVSLNPH----------KWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTS 71 (218)
Q Consensus 2 A~Gg~~~~~~~r~~~~gi~~aDSi~~d~H----------K~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~ 71 (218)
.+|+.+|.+|-.--+ |--+ ....|+-| |.++.-.+.|++++.++- ...+.....|...
T Consensus 244 k~Ggl~IaDEVqtGf-GRtG-~~wgfe~h~v~PDIvTmAKgiGnG~Pl~AVvtt~EI--a~v~~~~~~~fnT-------- 311 (442)
T KOG1404|consen 244 KRGGLFIADEVQTGF-GRTG-HMWGFESHGVVPDIVTMAKGIGNGFPLGAVVTTPEI--ADVLNQKSSHFNT-------- 311 (442)
T ss_pred HcCCEEEehhhhhcc-cccc-ccccccccCCCccHHHHHhhccCCCcceeeecCHHH--HHHHHhccccccc--------
Confidence 577777776654222 1122 34444444 666666778888876662 1344333221111
Q ss_pred CCCCCccCCcCccccCCCCCchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEecCCCc-e-eEEEEe-
Q 041549 72 TNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKD-ERFETVEPRKC-A-LVCFRL- 147 (218)
Q Consensus 72 ~~~~~~~~~~~~tl~~sR~~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~-~~~el~~~~~~-~-iV~Fr~- 147 (218)
| ++-+-.+..--++|+-+-++.+++ ++.+...+|.+.|.+. ++.+++.+.+. + ++-.-+
T Consensus 312 -----------y---ggnP~a~avg~aVL~Vikee~LqE---~aa~vG~yl~~~l~~l~d~h~iIGdVRG~GLm~GvE~V 374 (442)
T KOG1404|consen 312 -----------Y---GGNPVACAVGLAVLKVIKEENLQE---NAAEVGSYLLEKLAALKDKHPIIGDVRGRGLMLGVELV 374 (442)
T ss_pred -----------c---CCCchhHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHhhcCCceeecccceeEEEEEEe
Confidence 1 111111112223455566666665 4468999999999884 34666654211 1 111111
Q ss_pred ----cCCCc--chHHHhhc------eeecceEECCEEEEEEecCCCCCcHHHHHHHHHHH
Q 041549 148 ----KPKRE--SDGSELNQ------LSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLI 195 (218)
Q Consensus 148 ----~~~~~--~~~~~Ln~------~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l 195 (218)
.+..+ .....+++ ..+....+.|. ++|+++- .-.|.+|||.+++..
T Consensus 375 ~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~i~G~-vfriaPP-lciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 375 SDKSEPKPPATAEGAVIGEQCKELGVLVGKGGIHGN-VFRIAPP-LCITKEDIDFAVEYF 432 (442)
T ss_pred cccCCCCCcchHHHHHHHHHHHHhCeeeecccccce-EEEecCC-eeccHHHHHHHHHHH
Confidence 11111 22233433 34444445554 8999995 477899997777655
No 276
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=76.73 E-value=12 Score=36.18 Aligned_cols=94 Identities=16% Similarity=0.104 Sum_probs=64.0
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhceeecceEECCEEEEEEecCCC
Q 041549 102 KHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQLSLTQATLGGVYVIRCSIGTT 181 (218)
Q Consensus 102 ~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~~~vs~~~~~g~~~lR~~~~n~ 181 (218)
++|.+|++++-++...++-.|+..|+.. +-++++.+=+-.+-.+.....++..++-.+..+--..+++ .-+=++. -.
T Consensus 387 YHGp~gL~~IArrvh~~T~~l~~~l~~a-ghel~~k~fFDTLkI~~~~s~~~~l~rA~~~~iNlr~~ed-~tigvsl-DE 463 (1001)
T KOG2040|consen 387 YHGPHGLKEIARRVHNLTLILAEGLKNA-GHELQHKPFFDTLKIRCGCSAEEVLDRAAKRQINLRLVED-GTIGVSL-DE 463 (1001)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHhhc-chhhccccccceEEEEecCcHHHHHHHHHhhcCceEEeec-CceEEee-cc
Confidence 5799999999999999999999999985 7888887756666667654222222221111111111222 2356676 47
Q ss_pred CCcHHHHHHHHHHHHHH
Q 041549 182 LTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 182 ~tt~~di~~l~~~l~~~ 198 (218)
.++++|+|.++...++-
T Consensus 464 Tv~~~DvddLl~vf~~~ 480 (1001)
T KOG2040|consen 464 TVTEKDVDDLLWVFNEE 480 (1001)
T ss_pred cccHHHHHHHHHHHccC
Confidence 99999999999988644
No 277
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=76.71 E-value=40 Score=30.30 Aligned_cols=168 Identities=10% Similarity=0.102 Sum_probs=93.7
Q ss_pred CCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHH
Q 041549 18 GVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLW 97 (218)
Q Consensus 18 gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w 97 (218)
.+..+-+++|-+.|-+.+- .-|++.+.|+... +... .+........ ..+.+ +-...+=.++--.+-
T Consensus 171 t~Gd~~~fSF~~~K~ittg-EGGav~tnd~ela-~k~~----~lr~hG~~~~------~~~~y--~~~~~G~N~rm~~iq 236 (374)
T COG0399 171 SFGDIGAFSFHATKNLTTG-EGGAVVTNDEELA-EKAR----SLRNHGLSRD------AVFKY--LHEELGYNYRLTEIQ 236 (374)
T ss_pred cccceEEEEecCCCCcccc-CceEEEeCCHHHH-HHHH----HHHHhCcCCC------ccccc--eeeecccccCHHHHH
Confidence 3677889999999999888 5588888887654 2221 1111110000 00000 001111112222333
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEE-----EecCC--C-cchHHHhhce------ee
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCF-----RLKPK--R-ESDGSELNQL------SL 163 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~F-----r~~~~--~-~~~~~~Ln~~------~v 163 (218)
+++-....+.+.+++++..+++++..+.|++.+++.+..++....-++ +..+. + +...+.|+.. +.
T Consensus 237 AAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~~L~~~gi~~~~~~ 316 (374)
T COG0399 237 AAIGLAQLERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKEAGVGAVVYF 316 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCCCCCHHHHHHHHHhCCCCceEEe
Confidence 344444557788888888899999999999998877665544332222 22222 1 1123444441 11
Q ss_pred cce---------------EE-----CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHH
Q 041549 164 TQA---------------TL-----GGVYVIRCSIGTTLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 164 s~~---------------~~-----~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~ 200 (218)
.+. .+ -....|.+- ++|..+++|++++++.|++...
T Consensus 317 ~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP-~~p~l~~~~~~~V~~~l~~~~~ 372 (374)
T COG0399 317 RPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLP-LHPNLSEEDVDRVIEALKEVLG 372 (374)
T ss_pred eccccchhhhcccccccCCCchHHHHhhCeEEcc-CCCCCCHHHHHHHHHHHHHHhc
Confidence 110 00 013457764 5899999999999999988753
No 278
>PLN02231 alanine transaminase
Probab=76.53 E-value=29 Score=32.56 Aligned_cols=91 Identities=21% Similarity=0.300 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecCCCceeEEE-Eec-CCC------------cch-HHH-hhc--eeecce-EE---CC
Q 041549 113 RSDVNMAKRFEAMVAKDERFETVEPRKCALVCF-RLK-PKR------------ESD-GSE-LNQ--LSLTQA-TL---GG 170 (218)
Q Consensus 113 ~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~F-r~~-~~~------------~~~-~~~-Ln~--~~vs~~-~~---~g 170 (218)
+...+.++.+.+.|++.+++++. +|..+...| ++. +.. ++. +.. +.+ +.+.+. .. .|
T Consensus 421 ~~~~~r~~~l~~~L~~~~gi~~~-~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g 499 (534)
T PLN02231 421 SSLARRAKTLEDALNSLEGVTCN-KAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPG 499 (534)
T ss_pred HHHHHHHHHHHHHHhcCCCceec-CCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCC
Confidence 44556778888999988888865 577787777 332 110 011 122 322 223322 12 24
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhhcC
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLLQE 207 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~~~ 207 (218)
..++|+++ .+++++|++.++.|.+..+++..+.+
T Consensus 500 ~~~~Rit~---~~~~e~l~eal~RL~~~~~~~~~~~~ 533 (534)
T PLN02231 500 TWHFRCTI---LPQEDKIPAIVSRLTEFHKSFMDEFR 533 (534)
T ss_pred CCeEEEEe---CCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799987 46889999999999999888887764
No 279
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=76.41 E-value=33 Score=30.81 Aligned_cols=92 Identities=11% Similarity=0.122 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC--Ccch-HH-Hhhc--eeecceEE----CCEEEEEE
Q 041549 107 GLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK--RESD-GS-ELNQ--LSLTQATL----GGVYVIRC 176 (218)
Q Consensus 107 g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~--~~~~-~~-~Ln~--~~vs~~~~----~g~~~lR~ 176 (218)
.+..+.+...+..+.+.+.|.+++++++..+|..+.-.|--.+. +.+. +. .|.+ +.+++... .|..++|+
T Consensus 290 ~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRi 369 (393)
T COG0436 290 VVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGEPPGEGYVRL 369 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCCCCHHHHHHHHHHhCCEEEecccccCCCCCCCeEEE
Confidence 45555556678889999999999999999988787777654432 2222 23 3444 33443321 24578999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 177 SIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 177 ~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
+... .++++++.++.+.+....
T Consensus 370 s~~~---~~~~l~~a~~rl~~~~~~ 391 (393)
T COG0436 370 SLAT---SEETLEEALRRLARFLAE 391 (393)
T ss_pred EEec---CHHHHHHHHHHHHHHHHh
Confidence 9853 238888888888776543
No 280
>PRK06148 hypothetical protein; Provisional
Probab=76.38 E-value=18 Score=36.72 Aligned_cols=170 Identities=13% Similarity=0.122 Sum_probs=88.9
Q ss_pred cccccccCccccc---cc---------cCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCC
Q 041549 2 AYRSACICPEFRH---YL---------NGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASS 69 (218)
Q Consensus 2 A~Gg~~~~~~~r~---~~---------~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~ 69 (218)
.||+.+|++|..- ++ .|+ ..|-+++ =|.+..-++.|++..+++- .+.+.....+ .
T Consensus 816 ~~g~llI~DEVqtGfGRtG~~~~a~e~~gv-~PDivt~--gK~lggG~Plgav~~~~ei--~~~~~~g~~~-~------- 882 (1013)
T PRK06148 816 AAGGVCIADEVQVGFGRVGSHWWAFETQGV-VPDIVTM--GKPIGNGHPMGAVVTTREI--ADSFDNGMEY-F------- 882 (1013)
T ss_pred HhCCEEEEEecccCCCCCCCcchhhhhcCC-Ccceeee--cccccCCcceEEEEEcHHH--HhhccCCCcc-c-------
Confidence 4677777766531 11 133 3666666 6888877889999987542 2333211001 0
Q ss_pred CCCCCCCccCCcCccccCCCCCchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEecC--CCceeEEEE
Q 041549 70 TSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKD-ERFETVEP--RKCALVCFR 146 (218)
Q Consensus 70 ~~~~~~~~~~~~~~tl~~sR~~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~-~~~el~~~--~~~~iV~Fr 146 (218)
.+| . +-+......-.+|+.+-.+++.+.++ ++.++|.+.|++. ....++.+ ....++.+-
T Consensus 883 -----------~Tf--~-gnpla~aaa~a~L~~i~~e~l~~~~~---~~G~~l~~~L~~l~~~~~~i~~VrG~Gl~~gve 945 (1013)
T PRK06148 883 -----------NTF--G-GNPVSCAIGLAVLDIIEDEDLQRNAL---EIGNYLLAGLRELQDRFDIIGDVRGMGLFLGIE 945 (1013)
T ss_pred -----------cCC--C-CCHHHHHHHHHHHHHHhhccHHHHHH---HHHHHHHHHHHHHHHhCCCceEEeeeceEEEEE
Confidence 111 1 11112223334566676666665554 6778887777663 11222211 111233333
Q ss_pred ecCC-C---c--chHHH-----hhc-eeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 147 LKPK-R---E--SDGSE-----LNQ-LSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 147 ~~~~-~---~--~~~~~-----Ln~-~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
+... + + +.... +++ .++..+.. ...+||+.+. ...|++|||++++.+++...++.
T Consensus 946 l~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g~-~~~vlr~~Pp-l~it~~~id~~l~~l~~~l~~~~ 1012 (1013)
T PRK06148 946 LVTDRKTKAPATAIARYVKNGARERGILIGTEGP-HDNVLKIRPP-LIFSRADADHLLEVLDDVLAAAL 1012 (1013)
T ss_pred ecCCccccCccHHHHHHHHHHHHhCCeEEeccCC-CCCEEEEeCC-ccCCHHHHHHHHHHHHHHHHHHh
Confidence 3221 0 1 11122 223 33432211 1368999985 68999999999999998877653
No 281
>PRK07324 transaminase; Validated
Probab=76.37 E-value=48 Score=29.17 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCCeEEecCCCceeE-EEEecC-CCc-chHHHh-hc--eeecceE-ECCEEEEEEecCCCCCcHHHH
Q 041549 116 VNMAKRFEAMVAKDERFETVEPRKCALV-CFRLKP-KRE-SDGSEL-NQ--LSLTQAT-LGGVYVIRCSIGTTLTQDRHI 188 (218)
Q Consensus 116 ~~la~~l~~~L~~~~~~el~~~~~~~iV-~Fr~~~-~~~-~~~~~L-n~--~~vs~~~-~~g~~~lR~~~~n~~tt~~di 188 (218)
.+..+.+.+.|++.+++.++.| ..+.. ..++.. .+. +..+++ .+ +.+.+.. .....++|+++.. +++.+
T Consensus 282 ~~~~~~l~~~l~~~~~~~~~~p-~gg~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~~~~~iRis~~~---~~~~l 357 (373)
T PRK07324 282 RTNLAILDEWVAKEPRVSYVKP-KAVSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFDLEGHVRIGYCC---DTETL 357 (373)
T ss_pred HHHHHHHHHHHhcCCCceEECC-CceEEEEEEeCCCCCHHHHHHHHHHhcCEEEECccccCCCCeEEEEecC---CHHHH
Confidence 3455667777888778877654 43333 233332 222 223444 33 3343322 2224589999863 46777
Q ss_pred HHHHHHHHHHHH
Q 041549 189 DDLRKLIQEKAD 200 (218)
Q Consensus 189 ~~l~~~l~~~~~ 200 (218)
++.++.|.+..+
T Consensus 358 ~~~l~rl~~~l~ 369 (373)
T PRK07324 358 KKGLKKLSEFLR 369 (373)
T ss_pred HHHHHHHHHHHH
Confidence 777777766543
No 282
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=76.25 E-value=26 Score=30.80 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcee-EEEEecCC-Cc-chHHHh-hc--eeecceE---ECCEEEEE
Q 041549 105 YSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCAL-VCFRLKPK-RE-SDGSEL-NQ--LSLTQAT---LGGVYVIR 175 (218)
Q Consensus 105 ~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~i-V~Fr~~~~-~~-~~~~~L-n~--~~vs~~~---~~g~~~lR 175 (218)
.+-+++..+...+..+.+.+.|++. ++.+..+ ..+. +.+++++. +. +..+.+ .+ +++.+.. ..+..++|
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~~R 363 (383)
T TIGR03540 286 QDVVKEIRKIYQRRRDLLLEALKKI-GIDVEKP-KATFYVWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGEYGEGYIR 363 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC-CCEecCC-CcceEEEEECCCCCCHHHHHHHHHHHCCEEEecchhhCccCCCeEE
Confidence 3444555555567788889999987 7877644 4444 55565432 22 223443 33 3343221 12346899
Q ss_pred EecCCCCCcHHHHHHHHHHHH
Q 041549 176 CSIGTTLTQDRHIDDLRKLIQ 196 (218)
Q Consensus 176 ~~~~n~~tt~~di~~l~~~l~ 196 (218)
+++.. +++++++.++.|.
T Consensus 364 is~~~---~~~~l~~~l~~l~ 381 (383)
T TIGR03540 364 ISLTV---PDERLEEAVARIK 381 (383)
T ss_pred EEecC---CHHHHHHHHHHHh
Confidence 99963 3567666666654
No 283
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=76.23 E-value=55 Score=28.94 Aligned_cols=84 Identities=10% Similarity=0.080 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecCCCceeE-EEEecCC---Cc-chHHHhh-c--eeecceE---ECCEEEEEEecCCCC
Q 041549 114 SDVNMAKRFEAMVAKDERFETVEPRKCALV-CFRLKPK---RE-SDGSELN-Q--LSLTQAT---LGGVYVIRCSIGTTL 182 (218)
Q Consensus 114 ~~~~la~~l~~~L~~~~~~el~~~~~~~iV-~Fr~~~~---~~-~~~~~Ln-~--~~vs~~~---~~g~~~lR~~~~n~~ 182 (218)
...+..+++.+.|++. ++++.. |..+.. ..++++. +. +..+.+. + ..+.+.. ..+..++|++++.
T Consensus 295 ~~~~~~~~~~~~l~~~-~~~~~~-p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~~-- 370 (391)
T PRK07309 295 EYIKRRDYIIEKMTDL-GFKIIK-PDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYAA-- 370 (391)
T ss_pred HHHHHHHHHHHHHHHC-CCeecC-CCeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEecC--
Confidence 3345667788888886 677654 444443 3355432 11 2233432 2 3343322 1234689999863
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 041549 183 TQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 183 tt~~di~~l~~~l~~~~~~~ 202 (218)
+.+++++.++.|.+...++
T Consensus 371 -~~~~l~~~i~~l~~~~~~~ 389 (391)
T PRK07309 371 -SMETIKEAMKRLKEYMEEH 389 (391)
T ss_pred -CHHHHHHHHHHHHHHHHhh
Confidence 4678888888887766543
No 284
>PRK08912 hypothetical protein; Provisional
Probab=75.97 E-value=17 Score=32.07 Aligned_cols=85 Identities=12% Similarity=0.159 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCCCce-eEEEEecC----CCc-chHHHh-hc--eeecceE-E----CCEEEE
Q 041549 109 MYHIRSDVNMAKRFEAMVAKDERFETVEPRKCA-LVCFRLKP----KRE-SDGSEL-NQ--LSLTQAT-L----GGVYVI 174 (218)
Q Consensus 109 ~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~-iV~Fr~~~----~~~-~~~~~L-n~--~~vs~~~-~----~g~~~l 174 (218)
++..+...+..+++.+.|++. ++++.. +..+ .+.+++.+ .+. +..+.+ .+ +.+.+.. . .+..++
T Consensus 285 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~-~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~i 362 (387)
T PRK08912 285 EGMRADLARSRDRLAAGLRRI-GFPVLP-SQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDPVTSVV 362 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCcccC-CCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCCCCCEE
Confidence 344444557788888999887 777664 4444 45556653 122 223443 33 3333321 1 124689
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHH
Q 041549 175 RCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 175 R~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
|++++. .++.+++.++.|.+.
T Consensus 363 Rl~~~~---~~~~l~~~l~rl~~~ 383 (387)
T PRK08912 363 RFCFAK---RDATLDEAVERLAAA 383 (387)
T ss_pred EEEEeC---CHHHHHHHHHHHHHH
Confidence 999974 377888877777654
No 285
>PRK05965 hypothetical protein; Provisional
Probab=75.96 E-value=30 Score=31.71 Aligned_cols=103 Identities=16% Similarity=0.082 Sum_probs=58.1
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceeEEEEecCC----Cc-----chHHHh-----h
Q 041549 96 LWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKCALVCFRLKPK----RE-----SDGSEL-----N 159 (218)
Q Consensus 96 ~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~~iV~Fr~~~~----~~-----~~~~~L-----n 159 (218)
...+|+.+-.+++-+.+ -++.++|.+.|++.....++.+ ....++.+-+... ++ .....+ .
T Consensus 332 a~a~L~~l~~~~l~~~~---~~~g~~l~~~l~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~ 408 (459)
T PRK05965 332 GLEVLRLYHEGGLLANG---QKAGPRFAAGLDALRAHPLVGDVRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYA 408 (459)
T ss_pred HHHHHHHHHhccHHHHH---HHHHHHHHHHHHhhccCCCEEEEeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHh
Confidence 33456666666655555 4788888888877432222221 1222334433211 01 111222 2
Q ss_pred ceeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 160 QLSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 160 ~~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
+..+... .|..+||++|. ...+++||+++++.+.+...++.+
T Consensus 409 ~Gll~~~--~g~~~i~~~Pp-L~it~~ei~~~~~~l~~~l~~~~~ 450 (459)
T PRK05965 409 NGLVFRA--FGDGVLGFAPA-LCCTEGEFDLIFERTRKTLDDVLA 450 (459)
T ss_pred CCeEEEe--cCCcEEEEECC-CcCCHHHHHHHHHHHHHHHHHHhc
Confidence 2322221 24467999985 588999999999999999888733
No 286
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.94 E-value=7.8 Score=35.00 Aligned_cols=85 Identities=15% Similarity=0.241 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc---chHHH--------hhc-eeecceEE-------CCEEEEEEe
Q 041549 117 NMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE---SDGSE--------LNQ-LSLTQATL-------GGVYVIRCS 177 (218)
Q Consensus 117 ~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~---~~~~~--------Ln~-~~vs~~~~-------~g~~~lR~~ 177 (218)
.....+-+.++...++++.+++.++|+-.++.+... ++... +++ ..++.+.+ .-+.-||+|
T Consensus 363 ~k~~~~H~~l~~~s~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~~~~~~e~~~~~pSiri~ 442 (467)
T KOG1358|consen 363 AKVAKFHAALSSNSGFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAKYLEKLERCPIPPSIRIC 442 (467)
T ss_pred ccccccchhhhcCCceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhhhhhhcccCCCCCcEEEE
Confidence 455667777777778999999999999988887531 11111 222 22332221 124569999
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 178 IGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 178 ~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
+ +--.++++|+++.+.|++.+..+
T Consensus 443 ~-~a~~seeel~ra~~~ik~~~~~~ 466 (467)
T KOG1358|consen 443 V-SAGMSEEELERAAELIKEVASAV 466 (467)
T ss_pred E-eCCCCHHHHHHHHHHHHHHHHhh
Confidence 8 56899999999999999987654
No 287
>PRK06149 hypothetical protein; Provisional
Probab=75.93 E-value=57 Score=33.04 Aligned_cols=168 Identities=9% Similarity=0.087 Sum_probs=85.7
Q ss_pred cccccccCccccc---c----c-----cCCCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCC
Q 041549 2 AYRSACICPEFRH---Y----L-----NGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASS 69 (218)
Q Consensus 2 A~Gg~~~~~~~r~---~----~-----~gi~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~ 69 (218)
.||+.+|++|..- + + .|+ ..|-+++ =|-+..-++.|+++++++- .+.+... .+....
T Consensus 776 ~~g~llI~DEV~tGfGRtG~~~~a~e~~gv-~PDivt~--gK~lg~G~Pl~av~~~~~i--~~~~~~~-~~~~sT----- 844 (972)
T PRK06149 776 ARGGVCIADEVQVGYGRLGHYFWGFEQQGV-VPDIITM--AKGMGNGHPLGAVITRREI--AEALEAE-GYFFSS----- 844 (972)
T ss_pred HcCCEEEEEeehhcCCccCccchhhhhcCC-CCCEEEe--cccccCCeeeEEEEEcHHH--HhhhccC-CcccCC-----
Confidence 4666666655431 1 1 244 4676765 6887766778999987753 2343221 121110
Q ss_pred CCCCCCCccCCcCccccCCCCCchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEecC--CCceeEEEE
Q 041549 70 TSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDE-RFETVEP--RKCALVCFR 146 (218)
Q Consensus 70 ~~~~~~~~~~~~~~tl~~sR~~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~-~~el~~~--~~~~iV~Fr 146 (218)
+ ++-+..+...-++|..+-.+++.+.+ .++.++|.+.|++.. ...++.. ....++.+-
T Consensus 845 -------------~---~gnP~~~aaala~L~~i~~e~l~~~~---~~~G~~l~~~L~~l~~~~~~i~~vrG~Gl~~gve 905 (972)
T PRK06149 845 -------------T---GGSPVSCRIGMAVLDVLREEKLQENA---RRVGDHLKARLEALADRHPLIGAVHGMGLYLGVE 905 (972)
T ss_pred -------------C---CCCHHHHHHHHHHHHHHHhcCHHHHH---HHHHHHHHHHHHHHHHhCCCeEEEeecceEEEEE
Confidence 1 11111122333455666566655555 467778877776531 1222211 112233333
Q ss_pred ecCC------CcchHHHh-----hc-eeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 147 LKPK------RESDGSEL-----NQ-LSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 147 ~~~~------~~~~~~~L-----n~-~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
+... +.+....+ .+ .++.++. ....+||+.+. ...+++|||++++.|++...+
T Consensus 906 l~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g-~~~~vl~~~Pp-l~it~~~id~~~~~l~~~l~~ 970 (972)
T PRK06149 906 LVRDRQTLEPATEETAAICDRLLELGVIMQPTG-DHLNILKIKPP-LCLDRESADFFVDMLDRVLTE 970 (972)
T ss_pred EecCcccCCCChHHHHHHHHHHHhCCeEEeecC-CCCCEEEEECC-CcCCHHHHHHHHHHHHHHHHh
Confidence 3211 11111222 22 3443321 11257999884 478999999999999987654
No 288
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=75.84 E-value=30 Score=32.28 Aligned_cols=98 Identities=11% Similarity=0.101 Sum_probs=54.5
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceeEEEEecCCC--cc-------hHHH-----hhce
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKCALVCFRLKPKR--ES-------DGSE-----LNQL 161 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~~iV~Fr~~~~~--~~-------~~~~-----Ln~~ 161 (218)
.+|+.+-.+++.+++ -++.++|.+.|++.....++.+ ....++++.+.+.. .+ .... ++++
T Consensus 379 a~Le~i~~~~l~~~~---~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~G 455 (504)
T PLN02760 379 EALKIYKERNIPEHV---NKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRG 455 (504)
T ss_pred HHHHHHHhCCHHHHH---HHHHHHHHHHHHHHhcCCCeeeEEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCC
Confidence 355666555554444 4788888888876422222211 12234454443211 00 0111 2233
Q ss_pred eecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 162 SLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 162 ~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
.+... .+ ..+|+++. ...|++|||++++.+++...++
T Consensus 456 vl~~~--~g-~~lrl~Pp-l~it~eeid~~~~~l~~al~~~ 492 (504)
T PLN02760 456 MLVRV--AG-DNIMMSPP-LIITPEEVDELISIYGKALKAT 492 (504)
T ss_pred cEEEe--cC-CEEEEECC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 33221 23 46899984 5799999999999998887665
No 289
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=75.81 E-value=22 Score=30.68 Aligned_cols=85 Identities=7% Similarity=0.056 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceEECCEEEEEEecCCCCCcHH
Q 041549 109 MYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQATLGGVYVIRCSIGTTLTQDR 186 (218)
Q Consensus 109 ~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~~~g~~~lR~~~~n~~tt~~ 186 (218)
++..+...+..+++.+.|++. +++.. ......+.++.. ...+..+.+.+ +.+. ......++|+++.. +.+
T Consensus 242 ~~~~~~~~~~r~~l~~~L~~~-~~~~~-~~~~~f~~~~~~-~~~~~~~~l~~~gi~v~--~f~~~~~iRis~~~---~~~ 313 (330)
T PRK05664 242 RRQRERLLAASQRLAALLRRH-GLTPA-GGCALFQWVRTE-DAAALHEFLARRGILTR--LFEQPASLRFGLPA---DEA 313 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCccc-CCcceEEEEecC-CHHHHHHHHHHCCeEEE--ECCCCCeEEEECCC---CHH
Confidence 444455556788888888886 55311 111233444432 11222344444 2332 23344689999853 578
Q ss_pred HHHHHHHHHHHHHHH
Q 041549 187 HIDDLRKLIQEKADR 201 (218)
Q Consensus 187 di~~l~~~l~~~~~~ 201 (218)
+++++.+.|+++..+
T Consensus 314 ~~~~l~~al~~~~~~ 328 (330)
T PRK05664 314 DWARLDQALLAYRKE 328 (330)
T ss_pred HHHHHHHHHHHHHhh
Confidence 899999999887554
No 290
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=75.75 E-value=18 Score=31.56 Aligned_cols=83 Identities=10% Similarity=0.153 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc-chHHHhhc--eeecceEE---CCEEEEEEecCCC
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE-SDGSELNQ--LSLTQATL---GGVYVIRCSIGTT 181 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~-~~~~~Ln~--~~vs~~~~---~g~~~lR~~~~n~ 181 (218)
++.......+..+++.+.|++. ++++. +|..++..+...+.+. +..+.|.+ +.+.+... .+..++|+++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~L~~~-g~~~~-~p~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~- 344 (357)
T TIGR03539 268 VAEQKARYAARRAQLKPALEKA-GFRID-HSEAGLYLWATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA- 344 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCCCc-CCCccEEEEEECCCCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC-
Confidence 3333444446677788888885 67644 4566766655433322 23344434 33443221 234689999864
Q ss_pred CCcHHHHHHHHHHH
Q 041549 182 LTQDRHIDDLRKLI 195 (218)
Q Consensus 182 ~tt~~di~~l~~~l 195 (218)
++++|++.++.|
T Consensus 345 --~~~~i~~~~~~l 356 (357)
T TIGR03539 345 --TDERIAAAVARL 356 (357)
T ss_pred --CHHHHHHHHHhh
Confidence 478888888765
No 291
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=75.66 E-value=20 Score=31.62 Aligned_cols=87 Identities=10% Similarity=0.097 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC---Cc-chHHHh-hc--eeecceE-E--CCEEEEEEe
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK---RE-SDGSEL-NQ--LSLTQAT-L--GGVYVIRCS 177 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~---~~-~~~~~L-n~--~~vs~~~-~--~g~~~lR~~ 177 (218)
+++..+...+..+++.+.|++. ++....|.....+.+++++. +. +....+ .+ +.+.+.. . .+..++|++
T Consensus 291 l~~~~~~~~~~r~~l~~~L~~~-~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~ 369 (388)
T PRK07366 291 VQQTVQIFRQRRDAFINALHQI-GWPVPLPEATMYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGKSGEGYVRFA 369 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCcccCCCeeEEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCcCCCCeEEEE
Confidence 4444555556667788888876 67654444444556666532 11 223444 33 3444322 1 224689999
Q ss_pred cCCCCCcHHHHHHHHHHHHHH
Q 041549 178 IGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 178 ~~n~~tt~~di~~l~~~l~~~ 198 (218)
++. +++++++.++.|.+.
T Consensus 370 ~~~---~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 370 LVH---DPDILEEAVERIAAF 387 (388)
T ss_pred ecC---CHHHHHHHHHHHHHh
Confidence 863 478888888877653
No 292
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=75.37 E-value=26 Score=31.22 Aligned_cols=87 Identities=13% Similarity=0.017 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC-Cc-chHHHhh-c--eeecceE---ECCEEEEEEec
Q 041549 107 GLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK-RE-SDGSELN-Q--LSLTQAT---LGGVYVIRCSI 178 (218)
Q Consensus 107 g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~-~~-~~~~~Ln-~--~~vs~~~---~~g~~~lR~~~ 178 (218)
-+++..+...+..+.+.+.|+++ ++++..+.....+-.++++. +. +....+. + +.+.+.. ..+..++|+++
T Consensus 313 ~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~ 391 (409)
T PRK07590 313 QIKELIDYYMENAKIIREGLESA-GFEVYGGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLSA 391 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCceecCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEEc
Confidence 34444555556677788888886 67765433444555666542 22 2233332 2 3333221 12346899985
Q ss_pred CCCCCcHHHHHHHHHHHHH
Q 041549 179 GTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 179 ~n~~tt~~di~~l~~~l~~ 197 (218)
. .+++++++.++.|.+
T Consensus 392 ~---~~~~~l~~~l~rl~~ 407 (409)
T PRK07590 392 F---GSRENVLEAMERIKK 407 (409)
T ss_pred c---CCHHHHHHHHHHHHh
Confidence 3 467888888887765
No 293
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=75.01 E-value=41 Score=30.38 Aligned_cols=95 Identities=12% Similarity=0.146 Sum_probs=51.5
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCCceeEEEEecCC--C---cchHHHh-----hc-eee
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAKD----ERFETVEPRKCALVCFRLKPK--R---ESDGSEL-----NQ-LSL 163 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~----~~~el~~~~~~~iV~Fr~~~~--~---~~~~~~L-----n~-~~v 163 (218)
+|+.+-.+.+ +++..++.++|.+.|++. |.+.-+. +...+..+.+... . .+....+ .+ .++
T Consensus 310 ~L~~~~~~~l---~~~~~~~g~~l~~~L~~l~~~~~~i~~vr-g~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i 385 (421)
T PRK06777 310 VLDVIAEEKL---CQRALILGAHLVEVLEKAKASCPAIVDIR-ARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLL 385 (421)
T ss_pred HHHHHHhccH---HHHHHHHHHHHHHHHHHHHHhCCCeEEec-CceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEE
Confidence 3444433444 444457788888877763 4443333 3344444434321 1 1112222 23 444
Q ss_pred cceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 164 TQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 164 s~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
.+....+ .++|+++. ...++++|++.++.|++..
T Consensus 386 ~~~~~~g-~~lr~~pp-l~i~~~~i~~~~~~l~~~l 419 (421)
T PRK06777 386 LSCGVHG-NVIRFLYP-LTIPDAQFSKALNILTRLL 419 (421)
T ss_pred eecCCCC-CEEEEeCC-CCCCHHHHHHHHHHHHHHH
Confidence 4322112 58999984 3789999999999887653
No 294
>PRK06105 aminotransferase; Provisional
Probab=74.73 E-value=31 Score=31.71 Aligned_cols=103 Identities=11% Similarity=0.105 Sum_probs=57.7
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CCc-eeEEEEecCCC-------c-ch-HHHh-----h
Q 041549 96 LWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP-RKC-ALVCFRLKPKR-------E-SD-GSEL-----N 159 (218)
Q Consensus 96 ~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-~~~-~iV~Fr~~~~~-------~-~~-~~~L-----n 159 (218)
...+|+.+-.+++.+.+ -++.++|.+.|++.....++.+ ... .+.++.+.+.. . .. ...+ +
T Consensus 335 a~a~L~~i~~~~l~~~v---~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~ 411 (460)
T PRK06105 335 ALENLAIIEERDLVGNA---AERGARLQARLRALADHPLVGEVRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHE 411 (460)
T ss_pred HHHHHHHHHhccHHHHH---HHHHHHHHHHHHHhhcCCCeEEEEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHH
Confidence 33456666555555544 4788888888876533333322 122 23344442211 0 11 1222 2
Q ss_pred ceeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 041549 160 QLSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLL 205 (218)
Q Consensus 160 ~~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~ 205 (218)
+..+... .+ .++|++|. ...|++|||++++.+.+...++...
T Consensus 412 ~Gvl~~~--~g-~~i~l~Pp-l~it~~eid~~~~~l~~~l~~~~~~ 453 (460)
T PRK06105 412 HGVISRA--MG-DTLAFCPP-LIITAAQVDEMVDRFGRALDDVAAW 453 (460)
T ss_pred CCeEEEe--cC-CEEEEECC-CccCHHHHHHHHHHHHHHHHHHHHH
Confidence 2333221 13 47999985 4689999999999999998876553
No 295
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=74.28 E-value=42 Score=29.85 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=24.4
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLL 205 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~ 205 (218)
.++|++++. +++++++.++.|.+...+...+
T Consensus 385 ~~iRis~~~---~~~~l~~~i~~l~~~~~~~~~~ 415 (416)
T PRK09440 385 QCIRMNYVQ---DDEEIEKGIAILAEEVEKAYAE 415 (416)
T ss_pred ceEEEEecC---CHHHHHHHHHHHHHHHHHHhhc
Confidence 489999862 5899999999999887765443
No 296
>PLN02656 tyrosine transaminase
Probab=74.14 E-value=41 Score=30.07 Aligned_cols=92 Identities=8% Similarity=-0.026 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeE-EEEecC-----C-Cc-chH-HHhhc--eeecceE-ECCEEEE
Q 041549 107 GLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALV-CFRLKP-----K-RE-SDG-SELNQ--LSLTQAT-LGGVYVI 174 (218)
Q Consensus 107 g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV-~Fr~~~-----~-~~-~~~-~~Ln~--~~vs~~~-~~g~~~l 174 (218)
-+++..+..-+..+.+.+.|++++++....+|..+.. -.+++. . +. +.. ..+.+ +.+.+.. .+...++
T Consensus 300 ~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~~~~i 379 (409)
T PLN02656 300 FFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGLKNWL 379 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCCCCeE
Confidence 3555555555667778888888765544445655553 334321 1 11 112 23333 3344322 2334689
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 175 RCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 175 R~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
|++++. +++.+++.++.|.+....
T Consensus 380 Ri~~~~---~~e~l~eal~rl~~~~~~ 403 (409)
T PLN02656 380 RITFAA---DPSSLEEALGRIKSFYLR 403 (409)
T ss_pred EEEeCC---CHHHHHHHHHHHHHHHHH
Confidence 999973 578888888888776543
No 297
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=74.02 E-value=49 Score=28.81 Aligned_cols=79 Identities=10% Similarity=0.077 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHH-hhc--eeecceE-EC--CEEEEEEecCCCCCcHHHH
Q 041549 115 DVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSE-LNQ--LSLTQAT-LG--GVYVIRCSIGTTLTQDRHI 188 (218)
Q Consensus 115 ~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~-Ln~--~~vs~~~-~~--g~~~lR~~~~n~~tt~~di 188 (218)
..+..+++.+.|++++++.+. ++..+.+..+....+.+.... +.+ +.+.+.. .. +..++|+++.. .++.
T Consensus 272 ~~~~r~~l~~~L~~~~~~~~~-~~~~~fl~~~~~~~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iRi~~~~----~~~~ 346 (360)
T PRK07392 272 LPPAREALFQGLASLPGLTPL-PSAANFLLVQSQGSALQLQEKLLQQHRILIRDCLSFPELGDRYFRVAVRT----EAEN 346 (360)
T ss_pred HHHHHHHHHHHHHhCCCcEEC-CCCCCEEEEEcCCCHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEEEEeCC----HHHH
Confidence 345667788888888888765 344444444543221223344 333 3343321 11 34689999864 3445
Q ss_pred HHHHHHHHHH
Q 041549 189 DDLRKLIQEK 198 (218)
Q Consensus 189 ~~l~~~l~~~ 198 (218)
+++.+.|+++
T Consensus 347 ~~l~~al~~~ 356 (360)
T PRK07392 347 QRLLEALAAI 356 (360)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 298
>PRK08636 aspartate aminotransferase; Provisional
Probab=73.85 E-value=36 Score=30.30 Aligned_cols=90 Identities=11% Similarity=0.122 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC----Cc-chHHH-hhc--eeecceE-E--CCEEEEEE
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK----RE-SDGSE-LNQ--LSLTQAT-L--GGVYVIRC 176 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~----~~-~~~~~-Ln~--~~vs~~~-~--~g~~~lR~ 176 (218)
+++..+...+..+.+.+.|++. ++.+..+.....+..++++. +. +.... +.+ +.+.+.. . .+..++|+
T Consensus 300 ~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~~~~iRi 378 (403)
T PRK08636 300 VEEIRETYRKRRDVLIESFANA-GWELQKPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYGDEYVRI 378 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCcccCCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCcCCCCeEEE
Confidence 4444444556667788888876 67655444445566666532 11 22333 333 3343321 1 23468999
Q ss_pred ecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 177 SIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 177 ~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
++. .+++++++.++.|.+...+
T Consensus 379 ~~~---~~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 379 ALI---ENENRIRQAARNIKKFLKE 400 (403)
T ss_pred Eec---CCHHHHHHHHHHHHHHHHh
Confidence 985 3678888888877766544
No 299
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=73.83 E-value=39 Score=30.96 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=55.4
Q ss_pred HHHHHhcH-HH-HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcc---h-----H--------HHhh
Q 041549 98 TVIRKHGY-SG-LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRES---D-----G--------SELN 159 (218)
Q Consensus 98 ~~l~~~G~-~g-~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~---~-----~--------~~Ln 159 (218)
++++.+=. ++ |+.+-+..-.|.+-|.+.+.++ ++.+......+.++|.+.+.+.. + . ..|+
T Consensus 313 atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~-g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~ 391 (432)
T COG0001 313 ATLEELMTEEGVYERLDALGERLAEGLRAAAERH-GIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLN 391 (432)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHh
Confidence 34555544 44 5555444444444444444444 66665545556677766653221 1 0 1133
Q ss_pred c-eeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 160 Q-LSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 160 ~-~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
+ +++.+..++. .+...-.+++|||++++.+.+...++.
T Consensus 392 ~GV~l~ps~~ea------~flS~ahte~di~~~~~a~~~~~~~~~ 430 (432)
T COG0001 392 RGVYLAPSQFEA------GFLSTAHTEEDIDRTLEAADEAFKELA 430 (432)
T ss_pred CCcccCCccccc------eeeecccCHHHHHHHHHHHHHHHHHhh
Confidence 3 5565543333 333467889999999999998777664
No 300
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=73.75 E-value=19 Score=33.21 Aligned_cols=92 Identities=12% Similarity=0.151 Sum_probs=52.3
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhc----CCC-eEEec-CCCceeEEEEecCCCcchHHH-----hhceeecceE
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAK----DER-FETVE-PRKCALVCFRLKPKRESDGSE-----LNQLSLTQAT 167 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~----~~~-~el~~-~~~~~iV~Fr~~~~~~~~~~~-----Ln~~~vs~~~ 167 (218)
+|+.+-.+++.+.+ .++.++|.+.|++ .|. +.-+. .....++.+.+.+. ..... +++..+...
T Consensus 361 ~L~~l~~~~l~~~~---~~~g~~l~~~L~~l~~~~~~~i~~vRg~G~Glm~gie~~~~--~~~~~i~~~~~~~Gvl~~~- 434 (464)
T TIGR00699 361 IIQEIKRKDLLENV---AHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWDTPDE--AKRDKLLKKARNNGVNIGG- 434 (464)
T ss_pred HHHHHHhcCHHHHH---HHHHHHHHHHHHHHHHhCCCceeeecccCeEEEEEEecCCH--HHHHHHHHHHHHCCcEEec-
Confidence 45555555555544 3566777777665 331 22221 13455667766321 11122 233333221
Q ss_pred ECCEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 168 LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 168 ~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
.|..+||++|. ...+++|||++++.|++.
T Consensus 435 -~g~~~ir~~Pp-l~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 435 -CGVKAIRLRPM-LVFQKHHADIFLEIISKI 463 (464)
T ss_pred -CCCCeEEEeCC-CCCCHHHHHHHHHHHHHh
Confidence 24468999995 689999999999998764
No 301
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=73.41 E-value=22 Score=31.27 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcee-EEEEecCC-Ccc-hHHHh-hc--eeecceE-E--CCEEEEEEec
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCAL-VCFRLKPK-RES-DGSEL-NQ--LSLTQAT-L--GGVYVIRCSI 178 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~i-V~Fr~~~~-~~~-~~~~L-n~--~~vs~~~-~--~g~~~lR~~~ 178 (218)
+++..+...+..+++.+.|++. ++++.. |..+. +.+++++. +.. ....+ .+ +.+.+.. . .+..++|+++
T Consensus 291 ~~~~~~~~~~~~~~l~~~L~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~Ris~ 368 (385)
T PRK09276 291 VEELRKIYQERRDILVEGLRKL-GLEVEP-PKATFYVWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGEYGEGYFRIAL 368 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-CCcccC-CCcceEEEEECCCCCCHHHHHHHHHHhCCEEECCchhhCCCCCCeEEEEe
Confidence 4444455556788888999886 777664 44444 56665432 222 23443 33 3444321 1 2245899998
Q ss_pred CCCCCcHHHHHHHHHHHHH
Q 041549 179 GTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 179 ~n~~tt~~di~~l~~~l~~ 197 (218)
+. +++++.+.++.|.+
T Consensus 369 ~~---~~~~l~~~l~~l~~ 384 (385)
T PRK09276 369 TV---PDERIEEAVERIKK 384 (385)
T ss_pred CC---CHHHHHHHHHHHhh
Confidence 63 46677777666643
No 302
>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=73.20 E-value=29 Score=31.91 Aligned_cols=100 Identities=14% Similarity=0.138 Sum_probs=56.3
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceeEEEEecCCC----c---c--hHHH-----hhce
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKCALVCFRLKPKR----E---S--DGSE-----LNQL 161 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~~iV~Fr~~~~~----~---~--~~~~-----Ln~~ 161 (218)
++|+.+-.+++.+++ .++.++|.+.|++.....++.+ ....++.+.+.... + . .... +++.
T Consensus 334 a~L~~i~~~~l~~~~---~~~G~~l~~~L~~l~~~~~v~~vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~G 410 (466)
T PRK07030 334 ATLDIFEQDNVIENN---RALARRMAEATAHLADHPHVAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERG 410 (466)
T ss_pred HHHHHHHhcCHHHHH---HHHHHHHHHHHHHHhcCCCEEEeEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCC
Confidence 356666555554444 4788888888876422222221 12223444442110 0 0 0111 2233
Q ss_pred eecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 162 SLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 162 ~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
.+... .+ .++|+.|. ...|++||+++++.+++..+++.+
T Consensus 411 vl~~~--~g-~~i~~~Pp-l~it~~eid~~~~~l~~al~~~~~ 449 (466)
T PRK07030 411 ALLRP--LG-SVVYFLPP-YVITPEQIDFLAEVASEGIDIATR 449 (466)
T ss_pred eEEEe--cC-CEEEEECC-ccCCHHHHHHHHHHHHHHHHHHhh
Confidence 33221 13 47999984 689999999999999999998853
No 303
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=72.40 E-value=65 Score=29.35 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=26.2
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
.++|+++. ...++++|++.++.|.+...++..
T Consensus 415 ~~lrl~p~-l~~t~~~id~~l~~l~~~l~~~~~ 446 (451)
T PRK06918 415 NVIRVLMP-LVITDEQLEEGLTIIEESLQACYE 446 (451)
T ss_pred CEEEEECC-CccCHHHHHHHHHHHHHHHHHHHH
Confidence 57999984 247899999999999999877643
No 304
>PRK06348 aspartate aminotransferase; Provisional
Probab=72.39 E-value=31 Score=30.43 Aligned_cols=80 Identities=11% Similarity=0.071 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEecCCCceeEEE-EecC--CCc-chHHHh-hc--eeecceE-E--CCEEEEEEecCCCCCc
Q 041549 115 DVNMAKRFEAMVAKDERFETVEPRKCALVCF-RLKP--KRE-SDGSEL-NQ--LSLTQAT-L--GGVYVIRCSIGTTLTQ 184 (218)
Q Consensus 115 ~~~la~~l~~~L~~~~~~el~~~~~~~iV~F-r~~~--~~~-~~~~~L-n~--~~vs~~~-~--~g~~~lR~~~~n~~tt 184 (218)
.-+..+++.+.|++++++++. +|..+..+| ++++ .+. +....+ .+ +.+.+.. . .+..++|+++. .+
T Consensus 293 ~~~r~~~~~~~L~~~~~~~~~-~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~---~~ 368 (384)
T PRK06348 293 FQKRLEYAYKRIESIPNLSLH-PPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGESGEGYIRLACT---VG 368 (384)
T ss_pred HHHHHHHHHHHHhcCCCceec-cCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhccCCCCeEEEEec---CC
Confidence 345567788888888777654 466665443 4432 222 223333 33 3343321 1 23468999984 36
Q ss_pred HHHHHHHHHHHHHH
Q 041549 185 DRHIDDLRKLIQEK 198 (218)
Q Consensus 185 ~~di~~l~~~l~~~ 198 (218)
.+++++.++.|.++
T Consensus 369 ~~~l~~al~~l~~~ 382 (384)
T PRK06348 369 IEVLEEAFNRIEKM 382 (384)
T ss_pred HHHHHHHHHHHHhh
Confidence 78888888877654
No 305
>PLN00175 aminotransferase family protein; Provisional
Probab=72.25 E-value=41 Score=30.15 Aligned_cols=88 Identities=9% Similarity=0.065 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcee-EEEEecC--C-Cc-chHHHh-hc--eeecceE-E-----CCEE
Q 041549 107 GLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCAL-VCFRLKP--K-RE-SDGSEL-NQ--LSLTQAT-L-----GGVY 172 (218)
Q Consensus 107 g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~i-V~Fr~~~--~-~~-~~~~~L-n~--~~vs~~~-~-----~g~~ 172 (218)
-+++..+...+..+.+.+.|++. ++++.. |..+. +..++.+ . +. +....+ .+ +.+.+.. . .+..
T Consensus 310 ~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~-p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~~~ 387 (413)
T PLN00175 310 YYEELKRDYSAKKDILVEGLKEV-GFKVYP-SSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPEDGKN 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHC-CCeecC-CCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCCCCCC
Confidence 35555566667788888999886 787654 44454 4455432 1 12 223444 33 3333321 1 2346
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 173 VIRCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 173 ~lR~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
++|++++. ++++|++.++.|.+..
T Consensus 388 ~iRls~~~---~~e~l~~~~~rL~~~~ 411 (413)
T PLN00175 388 LVRFAFCK---DEETLRAAVERMKTKL 411 (413)
T ss_pred EEEEEEcC---CHHHHHHHHHHHHHHH
Confidence 89999963 5889999988887654
No 306
>PRK07550 hypothetical protein; Provisional
Probab=71.96 E-value=26 Score=30.87 Aligned_cols=84 Identities=13% Similarity=0.107 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecC--CCc-chHHHh-hc--eeecceE-E--CCEEEEEEecCCCC
Q 041549 112 IRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKP--KRE-SDGSEL-NQ--LSLTQAT-L--GGVYVIRCSIGTTL 182 (218)
Q Consensus 112 i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~--~~~-~~~~~L-n~--~~vs~~~-~--~g~~~lR~~~~n~~ 182 (218)
.+...+..+++.+.|++++++.+. ++....+.++.+. .+. +....+ .+ +.+.+.. . .+..++|+++. .
T Consensus 292 ~~~~~~~~~~l~~~L~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~--~ 368 (386)
T PRK07550 292 RAEIARRRDAFRAVFARLPGWELL-ASGAYFAYVRHPFPDRPSREVARRLAKEAGILCLPGTMFGPGQEGYLRLAFA--N 368 (386)
T ss_pred HHHHHHHHHHHHHHHHhCCCceeC-CCceEEEEecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCCCCCCEEEEEee--c
Confidence 334456677888888887676543 3333445555543 222 334444 33 3343321 1 23468999996 4
Q ss_pred CcHHHHHHHHHHHHHH
Q 041549 183 TQDRHIDDLRKLIQEK 198 (218)
Q Consensus 183 tt~~di~~l~~~l~~~ 198 (218)
.+++++++.++.|.+.
T Consensus 369 ~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 369 ADVAGIGELVERLRAF 384 (386)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 5689999999988765
No 307
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=71.94 E-value=27 Score=31.65 Aligned_cols=98 Identities=6% Similarity=-0.049 Sum_probs=53.6
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceeEEEEecCCC-c-chHHHh-hceeecceEECC
Q 041549 96 LWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKCALVCFRLKPKR-E-SDGSEL-NQLSLTQATLGG 170 (218)
Q Consensus 96 ~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~~iV~Fr~~~~~-~-~~~~~L-n~~~vs~~~~~g 170 (218)
.-.+|+.+-.+.+.+ +..++.++|.+.|++......+.+ -...++.+-+.+.. . ...+.+ .+..+... .|
T Consensus 317 a~aaL~~l~~~~~~~---~~~~~g~~l~~~L~~l~~~~~v~~vRg~Gl~~~ie~~~~~~~~~~~~~~~~~Gl~~~~--~g 391 (422)
T PRK05630 317 AHASLEIIETGMWRK---QVKRIEAELIAGLSPLAHLPGVADVRVLGAIGVVEMEQPVDMEEATQAAVDHGVWLRP--FG 391 (422)
T ss_pred HHHHHHHHHhCcHHH---HHHHHHHHHHHHHHHhhcCCCeeeeeccccEEEEEECCcccHHHHHHHHHHCCeEEEe--cC
Confidence 334566665555544 445677888777764322212221 12344555554321 1 112222 23333222 24
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHHH
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~~ 200 (218)
.++|+.|. ..++++|||++++.|++...
T Consensus 392 -~~l~~~Pp-L~it~~~i~~~~~~l~~al~ 419 (422)
T PRK05630 392 -RLVYVMPP-YITTSEQIAQICAALAAAVK 419 (422)
T ss_pred -CEEEEECC-ccCCHHHHHHHHHHHHHHHh
Confidence 58999985 58899999999999987753
No 308
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=70.97 E-value=35 Score=30.99 Aligned_cols=90 Identities=13% Similarity=0.169 Sum_probs=57.4
Q ss_pred cCCCC-CCeeeecccccCCCc--cceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCch
Q 041549 17 NGVEL-ADSVSLNPHKWFLTN--MDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKA 93 (218)
Q Consensus 17 ~gi~~-aDSi~~d~HK~l~~P--~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~a 93 (218)
+.++. ||-++-+.=||+.+- .-.|++..+.+...+ .+..-..+++. ++ .+
T Consensus 208 ~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~-~l~~~~~~lg~--------------------~~------~p 260 (409)
T KOG0053|consen 208 DPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELAS-RLKFLQEDLGW--------------------CE------DP 260 (409)
T ss_pred ChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHH-HHHHHHHHhcC--------------------CC------CH
Confidence 45655 999999999999874 334666655343321 11111112221 11 34
Q ss_pred hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Q 041549 94 LKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV 135 (218)
Q Consensus 94 l~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~ 135 (218)
+..|+. .-|.+.+.-+|++..+.|..+++.|.++|.++-+
T Consensus 261 ~~~~ll--~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv 300 (409)
T KOG0053|consen 261 FDLFLL--SRGLKTLHLRINKHSENALKIALLLEAHPKVKKV 300 (409)
T ss_pred HHHHHH--hcCcchhhhhHHHHHHHHHHHHHHhhhCCceeEE
Confidence 555554 4577778888999999999999999999988744
No 309
>PRK06836 aspartate aminotransferase; Provisional
Probab=70.94 E-value=40 Score=29.88 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCCCeEEecCCCceeEE-EEecCCCc-chHHHhhc--eeecce-EECCEEEEEEecCCCCCcHHHHHH
Q 041549 116 VNMAKRFEAMVAKDERFETVEPRKCALVC-FRLKPKRE-SDGSELNQ--LSLTQA-TLGGVYVIRCSIGTTLTQDRHIDD 190 (218)
Q Consensus 116 ~~la~~l~~~L~~~~~~el~~~~~~~iV~-Fr~~~~~~-~~~~~Ln~--~~vs~~-~~~g~~~lR~~~~n~~tt~~di~~ 190 (218)
.+..+.+.+.|+++ ++++.. |..+... .+.+..+. +..+.+.+ +.+.+. ......++|++++ .+++++++
T Consensus 306 ~~~r~~l~~~L~~~-g~~~~~-~~gg~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~~~---~~~~~~~~ 380 (394)
T PRK06836 306 KRNRDLLYDGLTEL-GFECVK-PQGAFYLFPKSPEEDDVAFCEKAKKHNLLLVPGSGFGCPGYFRLSYC---VDTETIER 380 (394)
T ss_pred HHHHHHHHHHHHhC-CCEeec-CCceEEEEEeCCCCCHHHHHHHHHhCCEEEECchhcCCCCeEEEEec---CCHHHHHH
Confidence 35567777888876 777664 4444443 34433222 22334433 333322 1112358999986 35888888
Q ss_pred HHHHHHHHHH
Q 041549 191 LRKLIQEKAD 200 (218)
Q Consensus 191 l~~~l~~~~~ 200 (218)
.++.|.++.+
T Consensus 381 ~i~~l~~~l~ 390 (394)
T PRK06836 381 SLPAFEKLAK 390 (394)
T ss_pred HHHHHHHHHH
Confidence 8888876653
No 310
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=70.92 E-value=35 Score=29.64 Aligned_cols=83 Identities=11% Similarity=0.086 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCc-chHHHhhc-eeecceEECCEEEEEEecCCCCC
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRE-SDGSELNQ-LSLTQATLGGVYVIRCSIGTTLT 183 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~-~~~~~Ln~-~~vs~~~~~g~~~lR~~~~n~~t 183 (218)
+-+.+.++...+..+++.+.|++. ++++. ++..+.+-+++.+.+. +..+.+.+ +.+... .. .++|++++.
T Consensus 249 ~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~-~~~g~f~~~~l~~~~~~~~~~~l~~~Gi~V~~-~~--~~~Risi~~--- 320 (335)
T PRK14808 249 EIFEERTKFIVEERERMKSALREM-GYRIT-DSRGNFVFIFMEKEEKERLLEHLRAKNIAVRS-FR--EGVRITIGK--- 320 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCEEC-CCCCeEEEEeCCCccHHHHHHHHHHCCeEEEE-CC--CCeEEecCC---
Confidence 344555666666777888889886 78755 4577777666653332 22334433 332221 22 469999864
Q ss_pred cHHHHHHHHHHHHH
Q 041549 184 QDRHIDDLRKLIQE 197 (218)
Q Consensus 184 t~~di~~l~~~l~~ 197 (218)
.++.+++++.|++
T Consensus 321 -~~~~~~~~~~l~~ 333 (335)
T PRK14808 321 -REENDMILKELEV 333 (335)
T ss_pred -HHHHHHHHHHHHh
Confidence 5788888888864
No 311
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=70.47 E-value=51 Score=30.16 Aligned_cols=96 Identities=11% Similarity=-0.004 Sum_probs=53.0
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC----C-CeEEecCCCceeEEEEecCCCc--chHHHh-hc-eeecceE
Q 041549 97 WTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKD----E-RFETVEPRKCALVCFRLKPKRE--SDGSEL-NQ-LSLTQAT 167 (218)
Q Consensus 97 w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~----~-~~el~~~~~~~iV~Fr~~~~~~--~~~~~L-n~-~~vs~~~ 167 (218)
-++|+.+-.+++.+.+ .++.++|.+.|++. | .+.=+. ....++.+.+..... ...+.+ ++ .++...
T Consensus 337 ~a~L~~i~~~~l~~~~---~~~G~~l~~~L~~l~~~~~~~i~~vR-G~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~- 411 (442)
T TIGR03372 337 LATINELLEKNLPAQA---AIKGDFLLDGFQQLAAEYPDLIIEAR-GKGLLMAIEFRDNEIGYAFAKELFQQNILVAGT- 411 (442)
T ss_pred HHHHHHHHhccHHHHH---HHHHHHHHHHHHHHHHhCCCceEEEe-cceEEEEEEeCChHHHHHHHHHHHHCCcEEeec-
Confidence 3456666555555544 46777777777653 3 111111 233445555543211 112233 33 334322
Q ss_pred ECCEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 168 LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 168 ~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
..+..+||+.|. ...|++|||++++.+++.
T Consensus 412 ~~~~~~lr~~Pp-l~~t~~~id~~~~~l~~~ 441 (442)
T TIGR03372 412 LNNAKSIRIEPP-LTITIEQCALVIKAAKDA 441 (442)
T ss_pred CCCCCEEEEECC-cccCHHHHHHHHHHHHHh
Confidence 122368999995 689999999999998764
No 312
>PRK06855 aminotransferase; Validated
Probab=70.43 E-value=39 Score=30.52 Aligned_cols=93 Identities=8% Similarity=0.028 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEE-EecCC----------------------------Cc-chHHH
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCF-RLKPK----------------------------RE-SDGSE 157 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~F-r~~~~----------------------------~~-~~~~~ 157 (218)
+++..+..-+..+.+.+.|++.+++.+ .+|..+..+| ++++. +. +.+..
T Consensus 304 ~~~~~~~~~~r~~~~~~~L~~~~~~~~-~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (433)
T PRK06855 304 LKERNKRYEKRSNIAYEKLKDVPGLKV-NRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYY 382 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeec-cCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHH
Confidence 344444445666778888888777764 4566665544 33321 00 11111
Q ss_pred -hhc--eeecceE-E-CCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 158 -LNQ--LSLTQAT-L-GGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 158 -Ln~--~~vs~~~-~-~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
+.+ +.+.+.. . .....+|+++++ .++++|++.++.|.++..+.+
T Consensus 383 l~~~~gV~v~PG~~F~~~~~~~Rls~~~--~~~~~i~~~~~~l~~~~~~~~ 431 (433)
T PRK06855 383 LLASTGICVVPLSSFCTELNGFRVTLLE--RDEEKFEWIYQTLAEKIEEYL 431 (433)
T ss_pred HHHHcCEEEecCCcCCCCCCceEEEECC--CcHHHHHHHHHHHHHHHHHHh
Confidence 223 3333221 1 112359999974 468999999999988876543
No 313
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=69.38 E-value=38 Score=31.23 Aligned_cols=104 Identities=10% Similarity=0.064 Sum_probs=59.6
Q ss_pred hHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEecCCCc-e-e--EEEEecC----CCcchHHHh-----h
Q 041549 94 LKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKD-ERFETVEPRKC-A-L--VCFRLKP----KRESDGSEL-----N 159 (218)
Q Consensus 94 l~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~-~~~el~~~~~~-~-i--V~Fr~~~----~~~~~~~~L-----n 159 (218)
...-++|+.+-.+++.+ +..++.+++.+.|.++ ..+.++.+.+. | . |-|.-.. .+.+..+++ .
T Consensus 328 Aaa~AvL~vie~e~L~~---~a~~~G~~l~~~L~~l~~~~~~IgdVRG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~ 404 (447)
T COG0160 328 AAALAVLDVIEEENLLE---RAAELGEYLRDRLEELQEKHPLIGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFE 404 (447)
T ss_pred HHHHHHHHHHHHccHHH---HHHHHHHHHHHHHHHHHhhcCceecccccceEEEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence 34445666666665554 4458999999988763 23555554321 1 1 2232211 111222322 2
Q ss_pred ce-eecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 160 QL-SLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 160 ~~-~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
+. .+..+- ....+||+.+- --.+++++|+.++.|++...++
T Consensus 405 ~Glil~~~G-~~~nviRi~PP-L~is~e~~d~~l~il~~al~~~ 446 (447)
T COG0160 405 RGLLLLTCG-PHGNVLRILPP-LTISDEELDEGLDILEEALKEA 446 (447)
T ss_pred cCCEEeccC-CCCcEEEEeCC-cccCHHHHHHHHHHHHHHHHhh
Confidence 22 222211 11579999985 4789999999999999887654
No 314
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=68.16 E-value=83 Score=28.30 Aligned_cols=95 Identities=15% Similarity=0.130 Sum_probs=50.0
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCCCceeEEEEecCC-----CcchHHHh-----hc-eee
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAK----DERFETVEPRKCALVCFRLKPK-----RESDGSEL-----NQ-LSL 163 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~----~~~~el~~~~~~~iV~Fr~~~~-----~~~~~~~L-----n~-~~v 163 (218)
+++.+..+++.++++ ++.+++.+.|++ +|.+..+. +...+..+.+.+. +.+....+ ++ ..+
T Consensus 309 ~l~~l~~~~~~~~~~---~~g~~l~~~L~~l~~~~~~~~~vr-g~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i 384 (420)
T TIGR00700 309 VLAIIESEGLIERAR---QIGRLVTDRLTTLKAVDPRIGDVR-GLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLL 384 (420)
T ss_pred HHHHHHhccHHHHHH---HHHHHHHHHHHHHHhhCCCEEEee-ccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEE
Confidence 355555556655554 455555555544 44444343 3344455554322 11112222 22 334
Q ss_pred cceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 164 TQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 164 s~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
.+...- ..+||+++. ...++++|++.++.|.+..
T Consensus 385 ~p~~~f-~~~lRl~p~-l~~~~~~l~~~~~~l~~~l 418 (420)
T TIGR00700 385 LTCGMF-GNIIRFLPP-LTIGDELLSEGLDILCAIL 418 (420)
T ss_pred eccCCC-CCEEEEECC-CCcCHHHHHHHHHHHHHHh
Confidence 332111 258999984 2477999999999988764
No 315
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=67.46 E-value=36 Score=30.64 Aligned_cols=87 Identities=15% Similarity=0.161 Sum_probs=57.5
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhcC-C--CeEEecCCCceeEEEEecCCCcchHHHhhc---eeecceEECCEEE
Q 041549 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAKD-E--RFETVEPRKCALVCFRLKPKRESDGSELNQ---LSLTQATLGGVYV 173 (218)
Q Consensus 100 l~~~G~~g~~~~i~~~~~la~~l~~~L~~~-~--~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~---~~vs~~~~~g~~~ 173 (218)
|+..-.+.+..+..++.+|.+.|.+.|++. + +|..+. ...|+ |.+.+-+++.+.+|.. +|++. .|
T Consensus 303 Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~-~Q~GM--Fsy~Gls~~QV~rLree~~IY~v~---sG--- 373 (396)
T COG1448 303 LRAEWEQELEEMRQRILEMRQALVDALKALGAPRNFDFII-SQRGM--FSYTGLSPEQVDRLREEFGIYLVA---SG--- 373 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchHh-hcCce--eecCCCCHHHHHHHHHhccEEEec---CC---
Confidence 444444455555555568999999999982 1 355553 23344 5555777778888877 45543 34
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 174 IRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 174 lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
|+++. -.++..|+.+.+.|.+.
T Consensus 374 -Ri~va--Gl~~~ni~~va~ai~~v 395 (396)
T COG1448 374 -RINVA--GLNTSNIDYVAKAIAAV 395 (396)
T ss_pred -eeeec--cCChhhHHHHHHHHHhh
Confidence 88885 56788999999888763
No 316
>PRK07481 hypothetical protein; Provisional
Probab=67.10 E-value=45 Score=30.48 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=53.6
Q ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEecCC--CceeEEEEecCC-------C--cchHHHh----
Q 041549 95 KLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDE-RFETVEPR--KCALVCFRLKPK-------R--ESDGSEL---- 158 (218)
Q Consensus 95 ~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~-~~el~~~~--~~~iV~Fr~~~~-------~--~~~~~~L---- 158 (218)
....+|+.+-.+++-+.+ .++.++|.+.|++.. .+.++.+. ...++.+.+... + ....+.+
T Consensus 329 aa~a~L~~l~~~~l~~~~---~~~g~~l~~~L~~l~~~~~~i~~vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~ 405 (449)
T PRK07481 329 AALATLDIVVREDLPANA---AKRGAYLLEGLQPLKERFELVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVA 405 (449)
T ss_pred HHHHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHhhcCCCeEEEeecceEEEEEecccccccCCCCchhHHHHHHHHHH
Confidence 344456666666655554 467788877776632 22232221 112333333211 1 0111222
Q ss_pred -hceeecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 159 -NQLSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 159 -n~~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
++..+... .| ..+|+++. ...|++|||++++.+++...++
T Consensus 406 ~~~Gvl~~~--~g-~~i~l~Pp-l~it~~eid~~~~~l~~~l~~~ 446 (449)
T PRK07481 406 RENGVLVRP--SG-TKIILSPP-LVIQREDVDRIVDALDAGLSAV 446 (449)
T ss_pred HhCCeEEEe--cC-CEEEEECC-CCCCHHHHHHHHHHHHHHHHhc
Confidence 23332221 23 35898884 3679999999999999887654
No 317
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=66.88 E-value=5 Score=37.79 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=65.7
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCC-cchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHS-SFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~-~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
..+|.++-+.||.+.+=-.+|.+.+++. ..-++.| +-.|+-..+. .+. |.+ +.++.+ +
T Consensus 221 ~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~--nea~~~h~ST----------SPs---Y~l-----~ASlD~-A 279 (557)
T COG1982 221 GGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERF--NEALMMHQST----------SPS---YPL-----MASLDV-A 279 (557)
T ss_pred cCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHH--HHHHHHHccC----------Cch---HHH-----HHHHHH-H
Confidence 6789999999999999999999999984 2111222 1123333221 111 212 123444 2
Q ss_pred H--HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCC
Q 041549 99 V--IRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRK 139 (218)
Q Consensus 99 ~--l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~ 139 (218)
. +...|+.-++.-++..++.+++++....+.++|+++.|+.
T Consensus 280 r~~~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~ 322 (557)
T COG1982 280 RMQEGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEK 322 (557)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccc
Confidence 1 2235666667779999999999999999999999998754
No 318
>PRK07480 putative aminotransferase; Validated
Probab=66.65 E-value=58 Score=29.84 Aligned_cols=34 Identities=15% Similarity=0.013 Sum_probs=27.9
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLLQ 206 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~~ 206 (218)
..+|++|. ...|++|||++++.+++...++..+.
T Consensus 420 ~~l~~~Pp-l~it~~eid~~~~~l~~al~~~~~~~ 453 (456)
T PRK07480 420 DRMIISPP-LVITHAEIDELVEKARKALDATAAEL 453 (456)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 46999985 46799999999999999988875543
No 319
>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=65.23 E-value=92 Score=28.52 Aligned_cols=33 Identities=15% Similarity=0.004 Sum_probs=27.7
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLL 205 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~ 205 (218)
.++|++|. ...|++|||++++.+++...++.++
T Consensus 418 ~~l~~~Pp-l~it~~eid~~~~~l~~al~~~~~~ 450 (453)
T PRK06943 418 TTVYLMPP-YVLDDDEIAWLAERTRATLDATLAE 450 (453)
T ss_pred CEEEEeCC-CcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 36999984 6899999999999999998887543
No 320
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=65.12 E-value=1e+02 Score=27.73 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=24.6
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
..+||+++. ...++++|++.++.|.+...+
T Consensus 394 ~~~iRl~~~-~~~t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 394 YNVLRILVP-LTIEDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred CCEEEEECC-CCcCHHHHHHHHHHHHHHHHh
Confidence 367999984 478899999999999887654
No 321
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=65.09 E-value=74 Score=29.18 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=54.5
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCC-CeEEecC--CCceeEEEEecCC--C--c--chHHH-----hhce-e
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDE-RFETVEP--RKCALVCFRLKPK--R--E--SDGSE-----LNQL-S 162 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~-~~el~~~--~~~~iV~Fr~~~~--~--~--~~~~~-----Ln~~-~ 162 (218)
.+|+.+-.+++.+.+ .++.++|.+.|++.. ...++.+ ....++++.+... . . +.... ++++ +
T Consensus 340 a~L~~l~~~~l~~~~---~~~g~~l~~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl 416 (459)
T PRK06082 340 ATIEVIEQEGLLEKV---KADSQFMRERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLS 416 (459)
T ss_pred HHHHHHHhcCHHHHH---HHHHHHHHHHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCE
Confidence 345666555554444 478888888887631 1222221 1222334444311 0 0 11111 2333 3
Q ss_pred ecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 163 LTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 163 vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
+.. .+..++|+++. ...+++|||++++.+++...++
T Consensus 417 ~~~---~~~~~i~~~Pp-l~it~~eid~~~~~l~~~l~~~ 452 (459)
T PRK06082 417 FKV---SQGNVIQLSPP-LIITREELTQALAILEEAIAKI 452 (459)
T ss_pred EEe---cCCCEEEEeCC-CccCHHHHHHHHHHHHHHHHHH
Confidence 322 23467999984 4689999999999999988776
No 322
>PRK07036 hypothetical protein; Provisional
Probab=64.78 E-value=49 Score=30.45 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=54.1
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC--CCceeEEEEecCCC----c-----chHHH-----hhce
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP--RKCALVCFRLKPKR----E-----SDGSE-----LNQL 161 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~--~~~~iV~Fr~~~~~----~-----~~~~~-----Ln~~ 161 (218)
.+|+.+-.+++.+.+ .++.++|.+.|++.....++.+ ....++.+.+.... + ..... +++.
T Consensus 340 a~Le~i~~~~l~~~~---~~~g~~l~~~L~~l~~~~~v~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 416 (466)
T PRK07036 340 KNIEIMEREGLCEHV---REVGPYFEERLASLRELPLVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERG 416 (466)
T ss_pred HHHHHHHhCCHHHHH---HHHHHHHHHHHHHhccCCCEEEEEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCC
Confidence 345666555554444 4788888888866433222221 12223344442111 0 01112 2233
Q ss_pred eecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 162 SLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 162 ~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
.+... .+ ..+|++|. ...|++|||++++.+++...++..
T Consensus 417 vl~~~--~~-~~~~l~Pp-l~it~~~id~~~~~l~~al~~~~~ 455 (466)
T PRK07036 417 LLVRP--LE-HLCVLSPP-LIITRAQIDEIVAILRAAIEETAD 455 (466)
T ss_pred cEEee--cC-CEEEEeCC-CcCCHHHHHHHHHHHHHHHHHHHH
Confidence 32221 23 46888884 468999999999999888877644
No 323
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=63.92 E-value=47 Score=28.80 Aligned_cols=85 Identities=8% Similarity=0.092 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcee-EEEEecCC-Cc-chHHHhhc--eeecceE-E--CCEEEEEEecC
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCAL-VCFRLKPK-RE-SDGSELNQ--LSLTQAT-L--GGVYVIRCSIG 179 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~i-V~Fr~~~~-~~-~~~~~Ln~--~~vs~~~-~--~g~~~lR~~~~ 179 (218)
+++..+...+..+.+.+.|++. ++++. +|..+. +.+.+++. +. +..+.|.+ +.+.+.. . .+..++|+++.
T Consensus 257 ~~~~r~~l~~~~~~~~~~l~~~-g~~~~-~~~g~~~~~~~~~~~~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~ 334 (350)
T TIGR03537 257 VLERRKIFKRKRDLFIEFFNKV-GLEYL-YPDATFYLWVKVPSGIDAKDYALRLLENGIVVAPGENFGSGEEGYVRVALV 334 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCccc-CCCeEEEEEEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEec
Confidence 3344444456677788888876 77655 444443 44555432 22 22344433 3343221 1 22468999974
Q ss_pred CCCCcHHHHHHHHHHHHH
Q 041549 180 TTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 180 n~~tt~~di~~l~~~l~~ 197 (218)
.+++++++.++.+++
T Consensus 335 ---~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 335 ---PTLEECEEALRLWER 349 (350)
T ss_pred ---CCHHHHHHHHHHHhc
Confidence 357888888877654
No 324
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=63.24 E-value=55 Score=29.89 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCCeEEecCCCce-eEEEEecCC--C---c---chHHHh-hc--eeecceE-E--CCEEEEEEecCC
Q 041549 116 VNMAKRFEAMVAKDERFETVEPRKCA-LVCFRLKPK--R---E---SDGSEL-NQ--LSLTQAT-L--GGVYVIRCSIGT 180 (218)
Q Consensus 116 ~~la~~l~~~L~~~~~~el~~~~~~~-iV~Fr~~~~--~---~---~~~~~L-n~--~~vs~~~-~--~g~~~lR~~~~n 180 (218)
.+..+.+.+.|++. +++++. +..+ .+.+++++. . . +...++ ++ +.+++.. . ..++|+|+|+.+
T Consensus 341 ~~~~~~~~~~L~~~-gi~~~~-~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~~g~fRi~fa~ 418 (447)
T PLN02607 341 RKRYEMIVQGLRRA-GIECLK-GNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSEPGWFRVCFAN 418 (447)
T ss_pred HHHHHHHHHHHHhC-CCCccc-CCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCCCCEEEEEecc
Confidence 34455667777775 776554 4444 455555421 0 1 112233 32 4555432 1 236799999964
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 041549 181 TLTQDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 181 ~~tt~~di~~l~~~l~~~~~ 200 (218)
..++++++.++.|.+...
T Consensus 419 --~~~~~l~~gl~Ri~~~l~ 436 (447)
T PLN02607 419 --MSEDTLEVALKRIHRFMD 436 (447)
T ss_pred --CCHHHHHHHHHHHHHHHH
Confidence 457888888888776654
No 325
>PRK05942 aspartate aminotransferase; Provisional
Probab=62.74 E-value=82 Score=27.83 Aligned_cols=86 Identities=12% Similarity=0.060 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcee-EEEEecCC-Cc-chHH-Hhhc--eeecceE-E--CCEEEEEE
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCAL-VCFRLKPK-RE-SDGS-ELNQ--LSLTQAT-L--GGVYVIRC 176 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~i-V~Fr~~~~-~~-~~~~-~Ln~--~~vs~~~-~--~g~~~lR~ 176 (218)
+.+++..++..+..+++.+.|++. ++.+. +|..++ +.+++++. +. +... .+.+ +.+.+.. . .+..++|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~iRi 370 (394)
T PRK05942 293 SYLQQVQERYRTRRDFLIQGLGEL-GWNIP-PTKATMYLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGEGGEGYVRI 370 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCeec-CCCeeeEEEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCcCCCCeEEE
Confidence 344444444456677788888876 77655 455664 44555432 22 2233 2333 3443321 1 23468999
Q ss_pred ecCCCCCcHHHHHHHHHHHH
Q 041549 177 SIGTTLTQDRHIDDLRKLIQ 196 (218)
Q Consensus 177 ~~~n~~tt~~di~~l~~~l~ 196 (218)
++.. +.+.+.+.++.|.
T Consensus 371 s~~~---~~~~l~~~l~~l~ 387 (394)
T PRK05942 371 SLIA---DCDRLGEALDRLK 387 (394)
T ss_pred EecC---CHHHHHHHHHHHH
Confidence 9852 3344444444443
No 326
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=62.61 E-value=1.2e+02 Score=27.57 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=28.0
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLL 205 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~ 205 (218)
..||++|. ...|++|||++++.+++...++...
T Consensus 398 ~~lr~~P~-l~~t~~~id~~~~~l~~~l~~~~~~ 430 (443)
T PRK08360 398 NVLRIQPP-LTIEKEVLDEGLDILEEAIEDVEEG 430 (443)
T ss_pred CEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 67999985 6899999999999999988776443
No 327
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=62.54 E-value=1.2e+02 Score=27.44 Aligned_cols=101 Identities=9% Similarity=0.018 Sum_probs=54.6
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc----CCCeEEecCCCceeEEEEecCCCc-----chHHHh-----hceee
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAK----DERFETVEPRKCALVCFRLKPKRE-----SDGSEL-----NQLSL 163 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~----~~~~el~~~~~~~iV~Fr~~~~~~-----~~~~~L-----n~~~v 163 (218)
++++.+-.+++.++++ ++.++|.+.|++ .|.+.-+. ....++.+.+.+.+. +....+ ++..+
T Consensus 309 a~l~~l~~~~l~~~~~---~~g~~l~~~L~~l~~~~~~i~~vr-G~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl 384 (425)
T PRK07495 309 AVLDVIEEEDLCERAN---QLGNRLKQRLASLRETVPEIADIR-GPGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLI 384 (425)
T ss_pred HHHHHHHhchHHHHHH---HHHHHHHHHHHHHHhhCCCeeeee-cCceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeE
Confidence 4566665556666554 566667666655 33321111 112234444433211 111222 23333
Q ss_pred cceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 164 TQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 164 s~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
....-.+..+||+.|. ...++++||++++.|++...++.
T Consensus 385 ~~~~g~~~~~~r~~Pp-l~it~~~id~~~~~l~~~l~~~~ 423 (425)
T PRK07495 385 LLTCGVHGNVIRFLAP-ITIQDDVFAEALDILEASILEAS 423 (425)
T ss_pred EeecCCCCCEEEEeCC-CccCHHHHHHHHHHHHHHHHHHh
Confidence 2211011367999985 58999999999999999887654
No 328
>KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism]
Probab=61.81 E-value=50 Score=31.03 Aligned_cols=93 Identities=17% Similarity=0.275 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecC---CCceeEEEEec---CCCcch--------HHHhhc-----------ee-ec
Q 041549 111 HIRSDVNMAKRFEAMVAKDERFETVEP---RKCALVCFRLK---PKRESD--------GSELNQ-----------LS-LT 164 (218)
Q Consensus 111 ~i~~~~~la~~l~~~L~~~~~~el~~~---~~~~iV~Fr~~---~~~~~~--------~~~Ln~-----------~~-vs 164 (218)
+++..+.--.+|.+...-.|.+.++-= ...+-|||-+. ...+++ .+.||- .| ..
T Consensus 581 IleaTi~hKakF~eLkd~~~sL~LlPi~eWAGiGaV~fiPsivkE~~~e~~nDiaKqeinhLNidLVeaLKStDaAFS~G 660 (838)
T KOG0630|consen 581 ILEATIKHKAKFIELKDCFDSLRLLPIPEWAGIGAVCFIPSIVKEGNEEDLNDIAKQEINHLNIDLVEALKSTDAAFSLG 660 (838)
T ss_pred HHHHHHHhhhhhhhhhhcccceEEeeccccccccceEecccccccCCHhHhhHHHHHHHhhccHHHHHHHhhhhhhcccC
Confidence 333333344445544444556666632 25677888651 111222 233332 12 22
Q ss_pred ceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 041549 165 QATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLLQ 206 (218)
Q Consensus 165 ~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~~ 206 (218)
.+...|.-++|+- -.+.+.|++++++.+.+.+.++.+.+
T Consensus 661 d~Tr~Gl~CVkFG---Mlsd~kdleeLldlVaqkGKeieenq 699 (838)
T KOG0630|consen 661 DCTRDGLICVKFG---MLSDEKDLEELLDLVAQKGKEIEENQ 699 (838)
T ss_pred CccccceeEEEec---cccchhhHHHHHHHHHHhchhhhhHH
Confidence 2334566778864 27789999999999988887775443
No 329
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=61.16 E-value=1.3e+02 Score=27.39 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=27.8
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
..+|+++. ...|++|||++++.+++...++.+
T Consensus 401 ~~lr~~p~-l~~t~~~id~~~~~l~~~l~~~~~ 432 (445)
T PRK08593 401 NVLRFQPP-LVITYEQLDTALNTIEQAFTALEA 432 (445)
T ss_pred CEEEEECC-CccCHHHHHHHHHHHHHHHHHHhc
Confidence 57999995 689999999999999998887654
No 330
>PRK08637 hypothetical protein; Provisional
Probab=61.06 E-value=66 Score=28.40 Aligned_cols=76 Identities=11% Similarity=0.163 Sum_probs=41.5
Q ss_pred HHHHHHHhcC---CCeEEecCCCceeEE-EEecCCCc-chHHHh-hc--eeecceEECCEEEEEEecCCCCCcHHHHHHH
Q 041549 120 KRFEAMVAKD---ERFETVEPRKCALVC-FRLKPKRE-SDGSEL-NQ--LSLTQATLGGVYVIRCSIGTTLTQDRHIDDL 191 (218)
Q Consensus 120 ~~l~~~L~~~---~~~el~~~~~~~iV~-Fr~~~~~~-~~~~~L-n~--~~vs~~~~~g~~~lR~~~~n~~tt~~di~~l 191 (218)
+.+.+.|++. +++.+. +|..+... +++++.+. +....+ .+ +.+.. .+..++|++++ ..++++|++.
T Consensus 303 ~~~~~~l~~~~~~~~~~~~-~~~~g~~~~~~l~~~~~~~l~~~l~~~~gv~~~~---~~~~~iRi~~~--~~~~~~i~~~ 376 (388)
T PRK08637 303 EKTKEVLYDGKYDDAWQAY-PFNSGYFMCLKLKGVDAEELRVHLLEKYGIGTIA---LNETDLRIAFS--CVEEEDIPEL 376 (388)
T ss_pred HHHHHHHHhhCCCCCcccc-cccceEEEEecCChHHHHHHHHHHhhhcceEEEe---ccCCceEEEee--cCCHHHHHHH
Confidence 3445555543 245544 34555443 35542222 223444 22 22221 23458999996 4678899998
Q ss_pred HHHHHHHHHH
Q 041549 192 RKLIQEKADR 201 (218)
Q Consensus 192 ~~~l~~~~~~ 201 (218)
++.|.+....
T Consensus 377 ~~~l~~~~~~ 386 (388)
T PRK08637 377 FDSIYKAIKD 386 (388)
T ss_pred HHHHHHHHHh
Confidence 8888777654
No 331
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=60.80 E-value=1.1e+02 Score=27.07 Aligned_cols=85 Identities=7% Similarity=-0.007 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHh-hc--eeecceE---------ECCEEEEE
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSEL-NQ--LSLTQAT---------LGGVYVIR 175 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~L-n~--~~vs~~~---------~~g~~~lR 175 (218)
+++..+...+..+.+.+.|++. +.+..|.....+.++++..+.+....+ .+ +.+.+.. -.+..++|
T Consensus 295 ~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~gg~f~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~R 372 (393)
T TIGR03538 295 VRENRALYREKFAAVLEILGQV--LDLELPDAGFYLWPKVPGDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVR 372 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--CcccCCCeeEEEEEECCCCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEE
Confidence 3344444455556666777653 333333333345555541122334444 33 3343221 12346899
Q ss_pred EecCCCCCcHHHHHHHHHHHHH
Q 041549 176 CSIGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 176 ~~~~n~~tt~~di~~l~~~l~~ 197 (218)
++++. +++++++.++.|.+
T Consensus 373 is~~~---~~~~l~~~l~~l~~ 391 (393)
T TIGR03538 373 IALVA---PLEECVEAAERIRS 391 (393)
T ss_pred EEecC---CHHHHHHHHHHHHH
Confidence 99863 47888888877765
No 332
>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]
Probab=60.29 E-value=4.7 Score=34.64 Aligned_cols=83 Identities=12% Similarity=0.095 Sum_probs=52.3
Q ss_pred CCCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHH
Q 041549 19 VELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWT 98 (218)
Q Consensus 19 i~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~ 98 (218)
..++|.+.-+.-|-..+|.|-.++-.-+.... +.+ .-.|-+..+. .-++.+-.
T Consensus 213 ~grida~vqsldknf~vpvggaiia~fk~n~i-q~i--ak~ypgrasa------------------------~ps~dlli 265 (432)
T KOG3843|consen 213 CGRIDAFVQSLDKNFMVPVGGAIIAAFKDNFI-QEI--AKMYPGRASA------------------------SPSLDLLI 265 (432)
T ss_pred hccHHHHHHHhhhcceeecchhHhhHhHHHHH-HHH--HHhCCCcccc------------------------CccHHHHH
Confidence 56788888899999999998655432222221 111 1234443321 12456677
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHhc
Q 041549 99 VIRKHGYSGLMYHIRSDVNMAKRFEAMVAK 128 (218)
Q Consensus 99 ~l~~~G~~g~~~~i~~~~~la~~l~~~L~~ 128 (218)
+|.++|..+|.+.....-++=-+++.++.+
T Consensus 266 tll~~gqn~f~e~~~eqkemf~~l~~ki~~ 295 (432)
T KOG3843|consen 266 TLLSLGQNAFKELFGEQKEMFLKLRNKIIK 295 (432)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999988877766666666666554
No 333
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=59.51 E-value=1.4e+02 Score=27.03 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=61.6
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCCc--eeEEEEecCCCcchH-HHhhc---eeecceE---ECCE
Q 041549 102 KHGYSGLMYHIRSDVNMAKRFEAMVAK-DERFETVEPRKC--ALVCFRLKPKRESDG-SELNQ---LSLTQAT---LGGV 171 (218)
Q Consensus 102 ~~G~~g~~~~i~~~~~la~~l~~~L~~-~~~~el~~~~~~--~iV~Fr~~~~~~~~~-~~Ln~---~~vs~~~---~~g~ 171 (218)
..|.+-+.+.+++.-+.-+++++.+.+ .|++++..|... .-+=||--+.+++.. ..+.. +.++... -.|.
T Consensus 280 ~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~p~gTYL~WLD~r~l~l~d~~l~~~ll~~akVal~~G~~FG~~g~ 359 (388)
T COG1168 280 NQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTEPQGTYLAWLDCRELGLDDSELAEFLLEEAKVALSPGSTFGEEGS 359 (388)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEecCCCceeeeeeccccCCChHHHHHHHHHhhcEeccCCCccCcCCC
Confidence 568888999999999999999999988 689998875322 334566655553222 22222 3333221 2456
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
+++|+- .-+..+-+++.++.|...
T Consensus 360 gf~RlN---~acpr~~L~eal~ri~~a 383 (388)
T COG1168 360 GFVRLN---FACPRAILEEALERLKRA 383 (388)
T ss_pred ceEEEe---cCCCHHHHHHHHHHHHHH
Confidence 899974 456667777777766644
No 334
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=59.39 E-value=58 Score=28.78 Aligned_cols=86 Identities=7% Similarity=-0.008 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHh-hc--eeecceE---------ECCEEEEE
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSEL-NQ--LSLTQAT---------LGGVYVIR 175 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~L-n~--~~vs~~~---------~~g~~~lR 175 (218)
+++..+...+..+.+.+.|++. +.+..|.....+-++++..+.+....+ .+ +.+.+.. -.+..++|
T Consensus 296 ~~~~~~~~~~~~~~~~~~L~~~--~~~~~p~~g~f~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iR 373 (396)
T PRK09147 296 VRENRALYREKFDAVTPILAPV--LDVQLPDAGFYLWAKVPGDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVR 373 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cCCCCCCeeEEEEEECCCCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEE
Confidence 3333444445555666666653 433333333344455541222233444 33 3333221 11246899
Q ss_pred EecCCCCCcHHHHHHHHHHHHHH
Q 041549 176 CSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 176 ~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
++++. +++++++.++.|.+.
T Consensus 374 i~~~~---~~~~l~~~l~rl~~~ 393 (396)
T PRK09147 374 IALVA---PLAECVEAAERIVDF 393 (396)
T ss_pred EEecC---CHHHHHHHHHHHHHH
Confidence 99874 367788777777654
No 335
>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=58.98 E-value=79 Score=28.99 Aligned_cols=98 Identities=11% Similarity=0.073 Sum_probs=53.2
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-C-CceeEEEEecC--CC--c--c---hHHH-----hhce
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEP-R-KCALVCFRLKP--KR--E--S---DGSE-----LNQL 161 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~-~-~~~iV~Fr~~~--~~--~--~---~~~~-----Ln~~ 161 (218)
.+|+.+-.+++.+.+ .++.++|.+.|++.....++.+ . ...++.+-+.. .. + . .... +++.
T Consensus 343 a~l~~l~~~~l~~~~---~~~g~~l~~~l~~l~~~~~v~~vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~G 419 (460)
T PRK06916 343 ANLELYEKTNLIEQV---ARKTEYVATQLEDLFALKHVGDIRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELG 419 (460)
T ss_pred HHHHHHHhccHHHHH---HHHHHHHHHHHHHhhcCCCeEEeecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCC
Confidence 355666566655544 4788888888876432222211 1 11223333321 10 0 0 0111 2233
Q ss_pred eecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 162 SLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 162 ~vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
.+... .| .++|+.|. ...+++|||++++.+++...++
T Consensus 420 vl~~~--~g-~~l~~~Pp-l~it~~~id~~~~~l~~~l~~~ 456 (460)
T PRK06916 420 MLTRP--LG-NTIVFMPP-LASTIDELDEMLRILYKAISDV 456 (460)
T ss_pred eEEEe--cC-CEEEEeCC-cccCHHHHHHHHHHHHHHHHhh
Confidence 32221 23 57999984 6889999999999998887653
No 336
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=57.77 E-value=62 Score=29.68 Aligned_cols=92 Identities=7% Similarity=0.044 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCce-eEEEEecCC--Cc---c---hHHH-hhc--eeecceE-E--CCEE
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCA-LVCFRLKPK--RE---S---DGSE-LNQ--LSLTQAT-L--GGVY 172 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~-iV~Fr~~~~--~~---~---~~~~-Ln~--~~vs~~~-~--~g~~ 172 (218)
+++..+...+..+.+.+.|++. ++.+. +|..+ .+.++++.. +. . .... +.+ +.+.+.. + .+..
T Consensus 326 l~~~~~~l~~rr~~l~~~L~~~-gi~~~-~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~~g 403 (468)
T PLN02450 326 LEENQKRLKQRQKKLVSGLEAA-GIKCL-KSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTEPG 403 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCCCC
Confidence 4445555566677788888886 77654 45555 445555421 11 1 1122 232 4444332 1 2356
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 173 VIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 173 ~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
++|+++++ .+++++++.++.|.++..+..
T Consensus 404 ~~Rl~f~~--~~~~~l~~~l~ri~~~l~~~~ 432 (468)
T PLN02450 404 WFRVCFAN--MSEETLDLAMKRLKSFVESDS 432 (468)
T ss_pred EEEEEecC--CCHHHHHHHHHHHHHHHHhcc
Confidence 89999974 457889999999888776655
No 337
>PRK09082 methionine aminotransferase; Validated
Probab=57.01 E-value=88 Score=27.55 Aligned_cols=87 Identities=13% Similarity=0.118 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcee-EEEEecC---CCc-chHHHh-hc--eeecceE-E----CCEE
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCAL-VCFRLKP---KRE-SDGSEL-NQ--LSLTQAT-L----GGVY 172 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~i-V~Fr~~~---~~~-~~~~~L-n~--~~vs~~~-~----~g~~ 172 (218)
+-+++..+..-+..+++.+.|++. ++++. ++..+. +.++++. .+. +....| .+ ..+.+.. + .+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~~~~ 363 (386)
T PRK09082 286 EHYLELPAFYQAKRDRFRAALANS-RFKLL-PCEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPFPHR 363 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-CCccc-CCCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCCCCC
Confidence 334444444456677788888874 77754 455664 4456642 122 223433 23 3343321 2 1246
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHH
Q 041549 173 VIRCSIGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 173 ~lR~~~~n~~tt~~di~~l~~~l~~ 197 (218)
++|++++. +++++++.++.|.+
T Consensus 364 ~~Ri~~~~---~~~~l~~~~~rl~~ 385 (386)
T PRK09082 364 LVRLCFAK---QEETLDAAAERLCQ 385 (386)
T ss_pred EEEEEecC---CHHHHHHHHHHHhh
Confidence 89999963 57888888877764
No 338
>PRK12414 putative aminotransferase; Provisional
Probab=56.15 E-value=1.1e+02 Score=26.94 Aligned_cols=82 Identities=13% Similarity=0.135 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEE-EecCC----CcchH-HHhhc--eeecceE-E--CC--EEEEEEe
Q 041549 111 HIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCF-RLKPK----RESDG-SELNQ--LSLTQAT-L--GG--VYVIRCS 177 (218)
Q Consensus 111 ~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~F-r~~~~----~~~~~-~~Ln~--~~vs~~~-~--~g--~~~lR~~ 177 (218)
..+...+..+.+.+.|++. ++++. +|..+...| ++.+. +.+.+ ..+.+ +.+.+.. . .+ ..++|++
T Consensus 289 ~~~~~~~~r~~l~~~L~~~-g~~~~-~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis 366 (384)
T PRK12414 289 LGAFYQRKRDLLARELAGS-RFELL-PSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGTDTGLIRLS 366 (384)
T ss_pred HHHHHHHHHHHHHHHHHhC-CCeec-CCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCCCCCEEEEE
Confidence 3344456777888888886 67754 455665554 55431 11222 23333 3333321 1 12 3689999
Q ss_pred cCCCCCcHHHHHHHHHHHHH
Q 041549 178 IGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 178 ~~n~~tt~~di~~l~~~l~~ 197 (218)
++. +++++++.++.|.+
T Consensus 367 ~~~---~~~~~~~~~~rl~~ 383 (384)
T PRK12414 367 FSK---DDATLVEGARRLCS 383 (384)
T ss_pred ecC---CHHHHHHHHHHHhh
Confidence 963 47888888877754
No 339
>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]
Probab=55.91 E-value=1.7e+02 Score=27.01 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=18.5
Q ss_pred hhHHHHHHHHhcHHHHHHHHHHH
Q 041549 93 ALKLWTVIRKHGYSGLMYHIRSD 115 (218)
Q Consensus 93 al~~w~~l~~~G~~g~~~~i~~~ 115 (218)
..-++..++..|.+|+.+.|.+.
T Consensus 332 q~iv~a~l~~wgqeG~~~wi~~l 354 (472)
T KOG0634|consen 332 QGIVYAMLKRWGQEGFLRWIQHL 354 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999998887653
No 340
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=55.56 E-value=1.4e+02 Score=25.89 Aligned_cols=80 Identities=9% Similarity=0.065 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceE-ECCEEEEEEecCCCCCcHH
Q 041549 110 YHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQAT-LGGVYVIRCSIGTTLTQDR 186 (218)
Q Consensus 110 ~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~-~~g~~~lR~~~~n~~tt~~ 186 (218)
+..+..-+..+.+.+.|... ..++..+.+.+++.+ ..+..+.+.+ +.+.+.. .+...++|+++. +.+
T Consensus 273 ~~~~~~~~~r~~l~~~L~~~-----~~~~~g~f~~~~~~~-~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~~----~~~ 342 (357)
T PRK14809 273 RTVETARWAREYIREELDAP-----TWESAGNFVLAEVGD-ASAVAEAAQERGVIVRDCTSFGLPECIRITCG----TRE 342 (357)
T ss_pred HHHHHHHHHHHHHHHHhcCc-----cCCCCCCEEEEECCC-HHHHHHHHHHCCEEEEECccCCCCCeEEEecC----CHH
Confidence 33333334444555555432 124555666666532 2223344444 3333221 222358999975 367
Q ss_pred HHHHHHHHHHHHH
Q 041549 187 HIDDLRKLIQEKA 199 (218)
Q Consensus 187 di~~l~~~l~~~~ 199 (218)
++++.++.|+++.
T Consensus 343 ~~~~~l~~L~~~l 355 (357)
T PRK14809 343 ETERAVEVLNEVL 355 (357)
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887653
No 341
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=53.93 E-value=84 Score=28.53 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEE-Eec----CCCcch---HHHhhc---eeecce-EECCEEE
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCF-RLK----PKRESD---GSELNQ---LSLTQA-TLGGVYV 173 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~F-r~~----~~~~~~---~~~Ln~---~~vs~~-~~~g~~~ 173 (218)
+=+...+.-.-..++.-.+.|+++|++.+...|+...-.. ... +.-..+ +.+|.+ .++-+. -+.-+.|
T Consensus 329 efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~nw 408 (447)
T KOG0259|consen 329 EFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLKNW 408 (447)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEeccchhhhccccccHHHHHHHhhhcceEEeccccccCCCe
Confidence 3444455444567778889999999999776665543221 111 110112 344444 333332 2344689
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 041549 174 IRCSIGTTLTQDRHIDDLRKLIQEKADRLLLL 205 (218)
Q Consensus 174 lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~ 205 (218)
+|+++ .+..+.|++.++.|++...+=..+
T Consensus 409 ~Ri~i---~~~~~~leea~~Rik~Fc~RH~~~ 437 (447)
T KOG0259|consen 409 LRIVI---TVEEEMLEEAFSRIKEFCDRHSKE 437 (447)
T ss_pred EEEEE---ccChHHHHHHHHHHHHHHHhhhhc
Confidence 99987 456789999999999988775533
No 342
>PRK09148 aminotransferase; Validated
Probab=53.26 E-value=1.2e+02 Score=27.05 Aligned_cols=89 Identities=4% Similarity=0.035 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCce-eEEEEecCC----Cc-chHHH-hhc--eeecceE-E--CCEEEEE
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCA-LVCFRLKPK----RE-SDGSE-LNQ--LSLTQAT-L--GGVYVIR 175 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~-iV~Fr~~~~----~~-~~~~~-Ln~--~~vs~~~-~--~g~~~lR 175 (218)
++...+...+..+++.+.|++. ++.+.. |..+ .+.+++++. +. +.... +.+ +.+.+.. . .+..++|
T Consensus 290 ~~~~~~~~~~~r~~l~~~L~~~-~~~~~~-p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~~~~R 367 (405)
T PRK09148 290 IAEMRELYKKRRDVLVESFGRA-GWDIPP-PAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGDGYVR 367 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCccCC-CCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCeEE
Confidence 3444445566777788888875 665443 4444 444555432 11 22233 323 3343321 1 2346899
Q ss_pred EecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 176 CSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 176 ~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
+++. .+.+.+++.++.|.+...+
T Consensus 368 i~~~---~~~~~l~~al~~l~~~l~~ 390 (405)
T PRK09148 368 IALV---ENEQRIRQAARNIKRFLSS 390 (405)
T ss_pred EEec---CCHHHHHHHHHHHHHHHHH
Confidence 9985 3567777777766665543
No 343
>PRK07482 hypothetical protein; Provisional
Probab=53.09 E-value=1.8e+02 Score=26.60 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=27.0
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
.++|+.|. ..+|++||+++++.+++..+++.+
T Consensus 426 ~~i~~~Pp-l~it~~ei~~~~~~l~~~l~~~~~ 457 (461)
T PRK07482 426 DILGFAPP-LVLTRAEADEIVAIAKDAVDEVLG 457 (461)
T ss_pred CEEEEeCC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 57999885 689999999999999988877643
No 344
>PRK06062 hypothetical protein; Provisional
Probab=50.64 E-value=2e+02 Score=26.28 Aligned_cols=31 Identities=3% Similarity=-0.073 Sum_probs=25.5
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
..+|+++. ...|++|||++++.+++...++.
T Consensus 417 ~~lrl~pp-l~~t~~eid~~~~~l~~~l~~~~ 447 (451)
T PRK06062 417 NRIHVVPP-CTVTEDEVREGLAILDAALAVAD 447 (451)
T ss_pred CEEEEECC-ccCCHHHHHHHHHHHHHHHHHhh
Confidence 46999884 57899999999999998876653
No 345
>PRK07683 aminotransferase A; Validated
Probab=50.25 E-value=1.8e+02 Score=25.61 Aligned_cols=91 Identities=8% Similarity=-0.015 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCC---Cc-chHHH-hhc--eeecceE-E--CCEEE
Q 041549 104 GYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPK---RE-SDGSE-LNQ--LSLTQAT-L--GGVYV 173 (218)
Q Consensus 104 G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~---~~-~~~~~-Ln~--~~vs~~~-~--~g~~~ 173 (218)
|..-+++..++..+..+.+.+.|++. ++.+. +|..+...+-..+. +. +.... +.+ +.+.+.. . .+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~ 358 (387)
T PRK07683 281 GKDDAKMMRHQYKKRRDYVYNRLISM-GLDVE-KPTGAFYLFPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSEYGEGY 358 (387)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHc-CCccc-CCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhCCCCCCe
Confidence 33334444555567777888888875 66644 45555544432221 22 12223 333 3343321 1 22468
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 174 IRCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 174 lR~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
+|++++. +++++.+.++.|.++.
T Consensus 359 ~Ri~~~~---~~~~~~~al~~l~~~l 381 (387)
T PRK07683 359 VRLSYAY---SIETLKEGLDRLEAFL 381 (387)
T ss_pred EEEEecC---CHHHHHHHHHHHHHHH
Confidence 9999963 5778888777777654
No 346
>PRK07337 aminotransferase; Validated
Probab=49.89 E-value=1.2e+02 Score=26.57 Aligned_cols=87 Identities=10% Similarity=-0.014 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCce-eEEEEecC------CCcch-HHH-hhc--eeecceE-E---CCE
Q 041549 107 GLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCA-LVCFRLKP------KRESD-GSE-LNQ--LSLTQAT-L---GGV 171 (218)
Q Consensus 107 g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~-iV~Fr~~~------~~~~~-~~~-Ln~--~~vs~~~-~---~g~ 171 (218)
.+++..+...+..+++.+.|+++ ++.+...|..+ .+.+++++ .+..+ ... +.+ +.+.+.. . .+.
T Consensus 284 ~~~~~~~~~~~~r~~~~~~L~~~-~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~ 362 (388)
T PRK07337 284 IYERRRAEFKRRRDFIVPALESL-GFKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPR 362 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCC
Confidence 35454555556777788888886 66543334433 44555543 12222 333 333 3343221 1 124
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHH
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~ 197 (218)
.++|+++.. .++++++.++.|.+
T Consensus 363 ~~~Ri~~~~---~~~~l~~~l~rl~~ 385 (388)
T PRK07337 363 DYIRLSYAT---SMSRLEEAVARLGK 385 (388)
T ss_pred CEEEEEecC---CHHHHHHHHHHHHH
Confidence 689999974 47777777766654
No 347
>PLN02672 methionine S-methyltransferase
Probab=49.12 E-value=1.6e+02 Score=30.46 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecC-------------------CCc-chHHHhh-c--eeec
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKP-------------------KRE-SDGSELN-Q--LSLT 164 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~-------------------~~~-~~~~~Ln-~--~~vs 164 (218)
+++..+...+..+++.+.|++. ++++. +|..+...|--.+ .+. +....|. + +.+.
T Consensus 968 l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~-~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~ 1045 (1082)
T PLN02672 968 VAEQKKILKSRAERLKETLEAC-GWDVL-EPQGGISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCIN 1045 (1082)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC-CCeEe-cCCcEEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEe
Confidence 3344444556677888888886 78754 4666766654211 011 1123333 3 3344
Q ss_pred ceEE-CCEEEEEEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 165 QATL-GGVYVIRCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 165 ~~~~-~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
+... +...++|++++ ++++++++.++.|++..
T Consensus 1046 PGs~FG~~g~~RIsfa---~~~e~LeeALerL~kf~ 1078 (1082)
T PLN02672 1046 SSSWTGIPGYCRFSFA---LEDSEFDRALKAIARFK 1078 (1082)
T ss_pred cCcccCCCCeEEEEec---CCHHHHHHHHHHHHHHH
Confidence 4322 23468999986 36889999999888753
No 348
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=46.84 E-value=40 Score=21.91 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=23.5
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 174 IRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 174 lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
+|++++ |-++++|...|-..+.+-.+++.
T Consensus 24 IRFVpi-Pv~~dee~~~L~s~~~~kLe~ma 52 (61)
T PF07131_consen 24 IRFVPI-PVVTDEEFHTLSSQLSQKLERMA 52 (61)
T ss_pred ceeecc-ccccHHHHHHHHHHHHHHHHHHH
Confidence 899985 99999999988887776666544
No 349
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=46.83 E-value=1.6e+02 Score=27.35 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCCeEEecCCCceeEE-EEecCC-C--c------chHHH-hhc--eeecceE-E--CCEEEEEEecC
Q 041549 116 VNMAKRFEAMVAKDERFETVEPRKCALVC-FRLKPK-R--E------SDGSE-LNQ--LSLTQAT-L--GGVYVIRCSIG 179 (218)
Q Consensus 116 ~~la~~l~~~L~~~~~~el~~~~~~~iV~-Fr~~~~-~--~------~~~~~-Ln~--~~vs~~~-~--~g~~~lR~~~~ 179 (218)
-+..+.+.+.|++. +++++. +..+..+ +++++. . . +..+. +++ +.+++.. . .+..++|+++.
T Consensus 341 ~~r~~~l~~~L~~~-gi~~~~-~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa 418 (496)
T PLN02376 341 GIRHKVFTTGIKKA-DIACLT-SNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFA 418 (496)
T ss_pred HHHHHHHHHHHHHC-CCcccC-CCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCCCCEEEEEee
Confidence 34455666777764 777654 4554444 344321 1 0 11122 233 3444322 2 23569999997
Q ss_pred CCCCcHHHHHHHHHHHHHHHHH
Q 041549 180 TTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 180 n~~tt~~di~~l~~~l~~~~~~ 201 (218)
+ .+++.+++.++.|.+...+
T Consensus 419 ~--~~~~~l~~al~rl~~~l~~ 438 (496)
T PLN02376 419 N--MDDDTLHVALGRIQDFVSK 438 (496)
T ss_pred C--CCHHHHHHHHHHHHHHHHH
Confidence 4 4568888888888777654
No 350
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=45.14 E-value=2.5e+02 Score=25.95 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=60.8
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCC-Cce-eEEEEecCCC--cc-----hHHHh-----hcee
Q 041549 98 TVIRKHGYSGLMYHIRSDVNMAKRFEAMVAK-DERFETVEPR-KCA-LVCFRLKPKR--ES-----DGSEL-----NQLS 162 (218)
Q Consensus 98 ~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~-~~~~el~~~~-~~~-iV~Fr~~~~~--~~-----~~~~L-----n~~~ 162 (218)
.+|+.+-.+++.++++ ++..+|.+.|++ .++...+.+. ..| +.++-+.... .+ ...++ .++.
T Consensus 332 a~L~i~e~e~l~~~~~---~~~~~l~~~L~~~l~~~p~VgdVR~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl 408 (449)
T COG0161 332 ANLDILEEEDLLERVA---EIGAYLQAGLQAALADHPLVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGL 408 (449)
T ss_pred HHHHHHHhcCHHHHHH---HHHHHHHHHHHHhcccCCcEEEeeccceEEEEEEecccccccchhhhHHHHHHHHHHHCCe
Confidence 4667777888888776 789999999987 4443445432 233 3344433221 11 11222 2244
Q ss_pred ecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHHhh
Q 041549 163 LTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLL 205 (218)
Q Consensus 163 vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~~ 205 (218)
+..+. | ..+=++|- .-.|+++||++++.+.+..++...+
T Consensus 409 ~iRp~--g-~~i~~~PP-liit~~eid~l~~~l~~al~~~~~~ 447 (449)
T COG0161 409 LIRPL--G-DVIYLMPP-LIITREEIDELVDALREALDETLAD 447 (449)
T ss_pred EEeec--C-CEEEEcCC-ccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 43333 3 24555663 4679999999999999998877654
No 351
>PRK07046 aminotransferase; Validated
Probab=44.88 E-value=1.8e+02 Score=26.69 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=22.6
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 173 VIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 173 ~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
.+++++ ..+++|||++++.+++...++.
T Consensus 425 ~~~~~p---~~t~~did~~~~~~~~~l~~~~ 452 (453)
T PRK07046 425 MMLVCP---ATTAADVDRLVAAFDACLGELL 452 (453)
T ss_pred cEEEeC---CCCHHHHHHHHHHHHHHHHHHh
Confidence 567665 3799999999999998877654
No 352
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=43.74 E-value=2e+02 Score=25.84 Aligned_cols=27 Identities=15% Similarity=0.067 Sum_probs=20.7
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 173 VIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 173 ~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
.++++ ...+++||+++++.+++...++
T Consensus 399 ~~~~~---~~~t~~ei~~~~~~l~~~l~~~ 425 (426)
T PRK00062 399 AGFVS---AAHTDEDIEKTLEAARKAFAAL 425 (426)
T ss_pred ceeee---ccCCHHHHHHHHHHHHHHHHhh
Confidence 45543 5779999999999998876543
No 353
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=39.32 E-value=1.4e+02 Score=26.05 Aligned_cols=91 Identities=13% Similarity=0.051 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC-C-----ceeEEEEecCC---C-cchHHHhhc-------ee---ec
Q 041549 105 YSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPR-K-----CALVCFRLKPK---R-ESDGSELNQ-------LS---LT 164 (218)
Q Consensus 105 ~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~-~-----~~iV~Fr~~~~---~-~~~~~~Ln~-------~~---vs 164 (218)
.+.+.+++++.-++++++.+.|++.+++.....+ . .....+++.+. + ++..+.|++ .| +.
T Consensus 236 L~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~~~pl~ 315 (363)
T PF01041_consen 236 LKRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRARGIETRPHYPKPLH 315 (363)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHHTTBEEBCSTSSCGG
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccccccchHHHHHHHHHHCCCcccccccCchh
Confidence 3567788888889999999999999999777532 2 22445666653 1 122344444 11 00
Q ss_pred -------ce-EEC---------CEEEEEEecCCCCCcHHHHHHHHHHHH
Q 041549 165 -------QA-TLG---------GVYVIRCSIGTTLTQDRHIDDLRKLIQ 196 (218)
Q Consensus 165 -------~~-~~~---------g~~~lR~~~~n~~tt~~di~~l~~~l~ 196 (218)
.. ... ....|-+-+ ++..+++|++.+++.|+
T Consensus 316 ~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~-~~~lt~edv~~I~~~ir 363 (363)
T PF01041_consen 316 RQPVYRSYPYYAPGDLPNAERLSQRLLSLPI-HPRLTEEDVDYIAEAIR 363 (363)
T ss_dssp GSGGGTTGEEEETSSSHHHHHHHHHEEEEEH-STTSCHHHHHHHHHHHH
T ss_pred hhHHHHhcCccccCCCHHHHHHHhCeEECcC-CCCCCHHHHHHHhhccC
Confidence 00 011 023466654 78999999999999874
No 354
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=37.43 E-value=53 Score=29.20 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=27.9
Q ss_pred CEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 170 GVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 170 g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
|..+||+.|. ...+++|++++++.|++...+++
T Consensus 330 g~~vlr~~Pp-l~it~~~i~~~~~~l~~~l~~~~ 362 (364)
T PRK04013 330 GQRVIRLLPP-LIISKDTMEEAKSAIEGVINDIL 362 (364)
T ss_pred CCCEEEEeCC-cccCHHHHHHHHHHHHHHHHHHh
Confidence 4468999995 58899999999999999887765
No 355
>PTZ00376 aspartate aminotransferase; Provisional
Probab=35.99 E-value=2e+02 Score=25.45 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCC---CeEEecCCCceeEEEEecCCCcchHHHhhc---eeecceEECCEEEEEEecCCCCC
Q 041549 110 YHIRSDVNMAKRFEAMVAKDE---RFETVEPRKCALVCFRLKPKRESDGSELNQ---LSLTQATLGGVYVIRCSIGTTLT 183 (218)
Q Consensus 110 ~~i~~~~~la~~l~~~L~~~~---~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~---~~vs~~~~~g~~~lR~~~~n~~t 183 (218)
+..++..+..+.+.+.|++.. +++.+ +|..+.-.|- +.+.+.+..|.+ +++.+ +. |++++ ..
T Consensus 318 ~~~~~~~~~r~~l~~~L~~~~~~~~~~~~-~p~gg~f~~~--~~~~~~~~~L~~~~~v~v~p----~~---Ris~~--~~ 385 (404)
T PTZ00376 318 EMSGRIQNMRQLLYDELKALGSPGDWEHI-INQIGMFSFT--GLTKEQVERLIEKYHIYLLD----NG---RISVA--GL 385 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCccccc-ccCceEEEec--CCCHHHHHHHHHhCCEeecC----CC---eEEEe--cc
Confidence 333444567777888888762 24333 3444443332 222333445543 44444 31 99985 37
Q ss_pred cHHHHHHHHHHHHHHHH
Q 041549 184 QDRHIDDLRKLIQEKAD 200 (218)
Q Consensus 184 t~~di~~l~~~l~~~~~ 200 (218)
+.++++.+++.|++...
T Consensus 386 ~~~~~~~~~~~l~~~~~ 402 (404)
T PTZ00376 386 TSKNVDYVAEAIHDVVR 402 (404)
T ss_pred CHHhHHHHHHHHHHHHh
Confidence 88999999999998754
No 356
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=35.51 E-value=3.6e+02 Score=24.87 Aligned_cols=31 Identities=10% Similarity=0.031 Sum_probs=27.0
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
.+||+.|. ...+++|||++++.|++...++.
T Consensus 439 ~vi~~~Pp-L~it~~ei~~~~~~l~~~l~~~~ 469 (472)
T PRK08742 439 DVLYWMPP-YCVDEAQLALLADTTRHAIDEAV 469 (472)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHHHHHHh
Confidence 57999995 68899999999999999887764
No 357
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=34.08 E-value=2.6e+02 Score=25.84 Aligned_cols=22 Identities=14% Similarity=0.061 Sum_probs=18.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHH
Q 041549 180 TTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 180 n~~tt~~di~~l~~~l~~~~~~ 201 (218)
....|++|||++++.+++...+
T Consensus 452 sl~ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 452 SLAHTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred CCCCCHHHHHHHHHHHHHHHHh
Confidence 3577899999999999987654
No 358
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=34.05 E-value=3.1e+02 Score=24.99 Aligned_cols=25 Identities=4% Similarity=0.235 Sum_probs=20.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 180 TTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 180 n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
+...|++|||++++.+++....+.+
T Consensus 407 s~~ht~~did~~~~a~~~~~~~~~~ 431 (433)
T PRK00615 407 SSAHSMENLDYAQNVLIDSLEKVFS 431 (433)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3566999999999999999887653
No 359
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=33.85 E-value=3.5e+02 Score=24.30 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=22.9
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
..+||+.+. ...+++||+++++.+.+..
T Consensus 392 ~~~irl~P~-l~i~~~ei~~~~~~l~~~l 419 (421)
T PRK09792 392 GNVIRFLYP-LTIPDAQFDAAMKILQDAL 419 (421)
T ss_pred CCEEEEeCC-CcCCHHHHHHHHHHHHHHH
Confidence 368999984 3599999999999988764
No 360
>PRK12403 putative aminotransferase; Provisional
Probab=33.02 E-value=3.9e+02 Score=24.48 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=25.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 173 VIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 173 ~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
.+|++|. ...|++|||++++.+++...++.+
T Consensus 425 ~~~l~Pp-l~it~~eid~~~~~l~~al~~~~~ 455 (460)
T PRK12403 425 RMIMAPA-LVAGRAEIDELVDKTRIAVDRTAR 455 (460)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4888885 478999999999999999887654
No 361
>PF03885 DUF327: Protein of unknown function (DUF327); InterPro: IPR005585 The proteins in this family are around 140-170 residues in length. The proteins contain many conserved residues, with the most conserved motifs found in the central and C-terminal region. The function of these proteins is unknown. ; PDB: 2P61_A 2QUP_A.
Probab=32.95 E-value=23 Score=27.26 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=25.5
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Q 041549 183 TQDRHIDDLRKLIQEKADRLLLLQEPENTRDY 214 (218)
Q Consensus 183 tt~~di~~l~~~l~~~~~~~~~~~~~~~~~~~ 214 (218)
...++++++++.|.+.++.+......+|.+.|
T Consensus 40 ~~~e~L~~Ll~~I~~~G~~L~~~~t~~~l~~Y 71 (147)
T PF03885_consen 40 KSEEELQELLDEIDEQGERLAESPTLENLKRY 71 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 34588999999999999999999888877766
No 362
>PLN02397 aspartate transaminase
Probab=31.48 E-value=3.1e+02 Score=24.63 Aligned_cols=79 Identities=10% Similarity=0.158 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC----eEEecCCCceeEEEEecCCCcchHHHh-hc--eeecceEECCEEEEEEecCC
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDER----FETVEPRKCALVCFRLKPKRESDGSEL-NQ--LSLTQATLGGVYVIRCSIGT 180 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~----~el~~~~~~~iV~Fr~~~~~~~~~~~L-n~--~~vs~~~~~g~~~lR~~~~n 180 (218)
++++.+...+..+.+.+.|+++ + ++++. |..+.-+|--. +.+.+..| .+ ++++ .+. |++++
T Consensus 334 ~~~~~~~~~~rr~~l~~~L~~~-~~~~~~~~~~-p~gg~fl~~~l--~~~~~~~Ll~~~~V~v~----~~~---Ri~~~- 401 (423)
T PLN02397 334 LKGMADRIISMRQKLYDALEAR-GSPGDWSHIT-KQIGMFSFTGL--NKEQVDRMTKEYHIYMT----RDG---RISMA- 401 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCCCCCCccc-CCceEEEecCC--CHHHHHHHHHhCCEEEC----CCC---eEEEe-
Confidence 4555556667888888899887 4 65443 55655555322 22334444 33 3443 232 99985
Q ss_pred CCCcHHHHHHHHHHHHHHH
Q 041549 181 TLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 181 ~~tt~~di~~l~~~l~~~~ 199 (218)
..++++++++++.|++..
T Consensus 402 -~~~~~~i~~~~~~i~~~~ 419 (423)
T PLN02397 402 -GLSSKNVPYLADAIHAVV 419 (423)
T ss_pred -eCCHHHHHHHHHHHHHHH
Confidence 478899999999999875
No 363
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=30.65 E-value=3.5e+02 Score=23.25 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--eeecceEECCEEEEEEecCCCCCc
Q 041549 107 GLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ--LSLTQATLGGVYVIRCSIGTTLTQ 184 (218)
Q Consensus 107 g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~--~~vs~~~~~g~~~lR~~~~n~~tt 184 (218)
-+.+.++...+..+.+.+.|.+. ..++..+.+.+.+. ..+.|.+ +.+....-.+..++|+++. +
T Consensus 252 ~~~~~~~~~~~~r~~l~~~L~~~-----~~~~~~~~~~~~~~-----~~~~l~~~gi~v~~~~~~~~~~~Ri~~~----~ 317 (337)
T PRK03967 252 LIEERIDYIIKERERVRRELGEY-----AYPSDANFLLLKLD-----AYDYLLENGIVVRKLSGRLEGHIRVTVG----K 317 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC-----cCCCCCcEEEEhHH-----HHHHHHHCCEEEEeCCCCCCCeEEEecC----C
Confidence 44455555556666777777653 12334444444331 2344433 3332211123458999876 3
Q ss_pred HHHHHHHHHHHHHHH
Q 041549 185 DRHIDDLRKLIQEKA 199 (218)
Q Consensus 185 ~~di~~l~~~l~~~~ 199 (218)
.++.+.+++.|+++.
T Consensus 318 ~~~~~~l~~~l~~~~ 332 (337)
T PRK03967 318 REENDEFIKALKEIK 332 (337)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777888877653
No 364
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=30.49 E-value=3.8e+02 Score=23.67 Aligned_cols=92 Identities=10% Similarity=0.016 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--C-eEEec-CCC----ceeEEEEecCC-C-cchHHHhhc-------eeecc---
Q 041549 106 SGLMYHIRSDVNMAKRFEAMVAKDE--R-FETVE-PRK----CALVCFRLKPK-R-ESDGSELNQ-------LSLTQ--- 165 (218)
Q Consensus 106 ~g~~~~i~~~~~la~~l~~~L~~~~--~-~el~~-~~~----~~iV~Fr~~~~-~-~~~~~~Ln~-------~~vs~--- 165 (218)
+.+.+.+++..+.+++..+.|++.+ + +++.. ++. ..+.++++.+. + ++..+.|.+ .|...
T Consensus 248 ~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~r~~l~~~L~~~gI~~~~~~~p~~~~ 327 (376)
T TIGR02379 248 EQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKDEDDRNELIKYLKEQEIMAVFHYVPLHSS 327 (376)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECCcCCHHHHHHHHHHCCCCccccCcCCCcc
Confidence 5567777777788888888887764 2 23221 111 12334455432 1 122334443 11100
Q ss_pred e---EE---CC---------EEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 166 A---TL---GG---------VYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 166 ~---~~---~g---------~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
+ .+ .+ ...|.+- +++..+++|++.+++.|++.
T Consensus 328 ~~~~~~~~~~~~~p~~~~~~~~~l~LP-~~~~l~~~~~~~i~~~i~~~ 374 (376)
T TIGR02379 328 PAGRYFGRFHGEDIYTTKESERLVRLP-LYYGLSKEDQARVIQTICDY 374 (376)
T ss_pred hhHHhhCCCCCCChHHHHHHhceEEcc-CCCCCCHHHHHHHHHHHHHH
Confidence 0 00 00 2357764 57899999999999999875
No 365
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=27.13 E-value=4.5e+02 Score=23.37 Aligned_cols=27 Identities=11% Similarity=0.033 Sum_probs=20.6
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHHHH
Q 041549 172 YVIRCSIGTTLTQDRHIDDLRKLIQEKADR 201 (218)
Q Consensus 172 ~~lR~~~~n~~tt~~di~~l~~~l~~~~~~ 201 (218)
..+|+++. .+++||+++++.|++...+
T Consensus 396 ~~~~l~~~---~t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 396 EACFLSAA---HTEEDIENTIEAAEEVFAE 422 (423)
T ss_pred cceeeECC---CCHHHHHHHHHHHHHHHhh
Confidence 35787652 6899999999999877543
No 366
>PRK11633 cell division protein DedD; Provisional
Probab=26.52 E-value=72 Score=26.58 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=24.1
Q ss_pred ECCEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q 041549 168 LGGVYVIRCSIGTTLTQDRHIDDLRKLIQEK 198 (218)
Q Consensus 168 ~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~ 198 (218)
.+| .+.|+-++ |+.+.++++.....|+++
T Consensus 185 ~~G-~~tRV~VG-P~~sk~~ae~~~~~Lk~~ 213 (226)
T PRK11633 185 VQG-KITRIYVG-PDASKDKLKGSLGELKQL 213 (226)
T ss_pred CCC-cEEEEEeC-CCCCHHHHHHHHHHHHHh
Confidence 345 57898885 999999999999999876
No 367
>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional
Probab=26.40 E-value=2.8e+02 Score=25.04 Aligned_cols=24 Identities=8% Similarity=-0.028 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHh
Q 041549 181 TLTQDRHIDDLRKLIQEKADRLLL 204 (218)
Q Consensus 181 ~~tt~~di~~l~~~l~~~~~~~~~ 204 (218)
...|++||+++++.+++...++..
T Consensus 385 ~~ht~~dId~~l~~l~~~l~~~~~ 408 (431)
T PRK06209 385 YAHGDADIERTIDAVHGALGVYRK 408 (431)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999888743
No 368
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=24.40 E-value=5.5e+02 Score=23.47 Aligned_cols=85 Identities=12% Similarity=0.047 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcC-CCeEEecCCCcee-EEEEecCC-Cc-chHHH-hhc-eeecc-e--EE---CCEEEEEEecCCCCCc
Q 041549 117 NMAKRFEAMVAKD-ERFETVEPRKCAL-VCFRLKPK-RE-SDGSE-LNQ-LSLTQ-A--TL---GGVYVIRCSIGTTLTQ 184 (218)
Q Consensus 117 ~la~~l~~~L~~~-~~~el~~~~~~~i-V~Fr~~~~-~~-~~~~~-Ln~-~~vs~-~--~~---~g~~~lR~~~~n~~tt 184 (218)
+..+.+.+.|++. |+...++.|..|+ +..++++. +. +...+ +.+ ..+.+ . .. +...++|+++. +.+
T Consensus 361 ~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s--~~~ 438 (459)
T COG1167 361 RRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFS--SPS 438 (459)
T ss_pred HHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCCCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcC--CCC
Confidence 3445566666665 3233344455554 45555543 22 22222 223 22221 1 11 12458999996 566
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041549 185 DRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 185 ~~di~~l~~~l~~~~~~~~ 203 (218)
+++|++.++.|.+...+..
T Consensus 439 ~e~i~~gi~~l~~~~~~~~ 457 (459)
T COG1167 439 EEEIEEGIKRLAALLREAA 457 (459)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8999988888888776654
No 369
>PF05910 DUF868: Plant protein of unknown function (DUF868); InterPro: IPR008586 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=24.33 E-value=55 Score=28.11 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=30.0
Q ss_pred ccccccccCCCCCC------eeeecccccCCC--c-cceeEEEEeCCcc
Q 041549 10 PEFRHYLNGVELAD------SVSLNPHKWFLT--N-MDCGCLWVKHSSF 49 (218)
Q Consensus 10 ~~~r~~~~gi~~aD------Si~~d~HK~l~~--P-~~~g~l~~r~~~~ 49 (218)
.+++.+|+|-+.+. =|.||.|=|++. | .++++|++|....
T Consensus 189 krL~WkFRGNqti~vdg~~V~V~WDVHdWlF~~~~~~~~AVFmFr~~~~ 237 (274)
T PF05910_consen 189 KRLRWKFRGNQTIFVDGLPVQVFWDVHDWLFNNGPGSGHAVFMFRPRSG 237 (274)
T ss_pred EEeeecccCceEEEECCeEEEEEEEhhhhhhccCCCCCceEEEEEecCC
Confidence 56778888855443 378999999998 4 3489999998854
No 370
>PRK08960 hypothetical protein; Provisional
Probab=23.41 E-value=5e+02 Score=22.66 Aligned_cols=86 Identities=8% Similarity=0.017 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcee-EEEEecC--CCcc-hHHHh-hc--eeecce-EEC---CEEEEEE
Q 041549 108 LMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCAL-VCFRLKP--KRES-DGSEL-NQ--LSLTQA-TLG---GVYVIRC 176 (218)
Q Consensus 108 ~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~i-V~Fr~~~--~~~~-~~~~L-n~--~~vs~~-~~~---g~~~lR~ 176 (218)
+.+..+...+..+.+.+.|+++ ++.+...|..+. +-++++. .+.. ....+ .+ +.+.+. ... +..++|+
T Consensus 287 l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~p~g~~f~~~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi 365 (387)
T PRK08960 287 LEARRAEFARRRDFLLPALREL-GFGIAVEPQGAFYLYADISAFGGDAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRF 365 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCcCCcCCCeeEEEEEeccccCCCHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEE
Confidence 3333334445567788888876 666543344443 3344432 2222 23343 33 334332 111 2358999
Q ss_pred ecCCCCCcHHHHHHHHHHHHH
Q 041549 177 SIGTTLTQDRHIDDLRKLIQE 197 (218)
Q Consensus 177 ~~~n~~tt~~di~~l~~~l~~ 197 (218)
++.. +.+.+.+.++.|.+
T Consensus 366 ~~~~---~~~~l~~al~~l~~ 383 (387)
T PRK08960 366 AYTQ---SLPRLQEAVERIAR 383 (387)
T ss_pred EecC---CHHHHHHHHHHHHH
Confidence 9973 35566665555544
No 371
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=22.86 E-value=5.8e+02 Score=23.17 Aligned_cols=37 Identities=16% Similarity=0.032 Sum_probs=26.7
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCe
Q 041549 96 LWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERF 132 (218)
Q Consensus 96 ~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~ 132 (218)
+.+++-....+.+.+++++..++++++.+.|++.++.
T Consensus 295 l~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~~~~~ 331 (438)
T PRK15407 295 MQAAIGLAQLEKLPGFIEARKANFAYLKEGLASLEDF 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 3333333445667788888889999999999987753
No 372
>PRK05839 hypothetical protein; Provisional
Probab=22.49 E-value=4.4e+02 Score=23.01 Aligned_cols=26 Identities=8% Similarity=0.104 Sum_probs=20.0
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHH
Q 041549 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKA 199 (218)
Q Consensus 171 ~~~lR~~~~n~~tt~~di~~l~~~l~~~~ 199 (218)
..++|+++.. +++++++.++.|.+..
T Consensus 347 ~~~iRis~~~---~~~~~~~~l~~l~~~l 372 (374)
T PRK05839 347 KGYVRIALVY---DTPKLEKALEIIKTYL 372 (374)
T ss_pred CCeEEEEecC---CHHHHHHHHHHHHHHh
Confidence 4789999852 4888888888887654
No 373
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=21.30 E-value=1.1e+02 Score=27.57 Aligned_cols=28 Identities=21% Similarity=0.111 Sum_probs=21.9
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCc
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSS 48 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~ 48 (218)
.+||=++|++-|.+++|- +|++.=|.+-
T Consensus 202 ~GaDlV~fSGdKlLGGPQ-aGiI~Gkk~l 229 (367)
T PF03841_consen 202 AGADLVTFSGDKLLGGPQ-AGIIVGKKEL 229 (367)
T ss_dssp CT-SEEEEETTSSSSS-S--EEEEEEHHH
T ss_pred cCCCEEEEECCCcCCCCC-eEEEEeCHHH
Confidence 679999999999999997 6998887663
No 374
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=20.96 E-value=98 Score=26.61 Aligned_cols=99 Identities=17% Similarity=0.071 Sum_probs=52.6
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCcchhhhhcCCcccccccCCCCCCCCCCCCccCCcCccccCCCCCchhHHHHH
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTV 99 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~~tl~~sR~~~al~~w~~ 99 (218)
..+|++++.+.|-++.|.| ++|..+++ .+.+.... ..+++. .. ..-++. .+..+|..
T Consensus 184 ~~~D~v~~~~tK~~g~~~G-avl~~~~~-~i~~~~~~-~k~~gg-------------~~--~~~G~~-----~a~~~~~~ 240 (290)
T PF01212_consen 184 AGADSVSFGGTKNGGAPGG-AVLAGNKE-FIAKARRQ-RKRLGG-------------GM--RQAGVL-----AAAELYQF 240 (290)
T ss_dssp TTSSEEEEETTSTT-SSSE-EEEEESHH-HHHHHHHH-HHHHTH-------------HH--HHTTHH-----HHHHHHHH
T ss_pred hhCCEEEEEEEcccccccc-eEEEechH-HHHHHHHH-HHHhcc-------------Ce--eeccee-----eeechhhH
Confidence 7799999999999999986 44444433 22222211 011111 00 000000 01122211
Q ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcee
Q 041549 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCAL 142 (218)
Q Consensus 100 l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~i 142 (218)
--..+.+.....+++..++|++|++.|+.. ++.+..|+..+.
T Consensus 241 ~~l~~l~~~~~~~~~~~~~A~~La~~l~~~-~~~~~~~~~tn~ 282 (290)
T PF01212_consen 241 AALRALELWLERARHANAMAKRLAAGLEAL-GGVLPRPVETNQ 282 (290)
T ss_dssp HHHCHEECSHHHHHCHHHHHHCHHHCHHEE-CEEEETTSS-HH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHC-CCcccCCCCCcE
Confidence 111222334677788889999999999997 666776665544
No 375
>PRK01490 tig trigger factor; Provisional
Probab=20.50 E-value=4.9e+02 Score=23.48 Aligned_cols=107 Identities=11% Similarity=0.096 Sum_probs=61.5
Q ss_pred ccccCCCCCchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhc--
Q 041549 83 WQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ-- 160 (218)
Q Consensus 83 ~tl~~sR~~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~-- 160 (218)
..++|=|++. .+..+.-+.+|..=..+.++.. +.+.+.+.+++. .++.+..|...... +.+.. .+.-
T Consensus 39 ~~ipGFRkGk-vP~~ii~k~~g~~i~~e~~~~l--i~~~~~~~i~~~-~~~~~~~p~i~~~~--~~~~~-----~~~~~~ 107 (435)
T PRK01490 39 VRIPGFRKGK-VPRKIVEQRYGESVRQEALNDL--LPEAYEEAIKEE-GIRPAGQPEIEPTE--EEKGK-----DLEFTA 107 (435)
T ss_pred CcCCCccCCC-CCHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHc-CCCcCCCCcccccc--cCCCC-----cEEEEE
Confidence 3578877776 4556677889987444555543 346677777775 67777766554322 21111 0110
Q ss_pred ee-e----cceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHHH
Q 041549 161 LS-L----TQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203 (218)
Q Consensus 161 ~~-v----s~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~~ 203 (218)
.+ + ....+.| |.+.......|+++|+..++.|.+....+.
T Consensus 108 ~~~v~Pev~l~~y~~---i~v~~~~~~vtde~vd~~i~~l~~~~a~~~ 152 (435)
T PRK01490 108 EVEVYPEVELGDYKG---LEVEKPVVEVTDEDVDEELERLRKQFATLV 152 (435)
T ss_pred EeeecCCcccCCCCc---eEEEeccCCCCHHHHHHHHHHHHHhCCccc
Confidence 00 1 1112344 333333468899999999998877655543
No 376
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=20.48 E-value=6.1e+02 Score=22.57 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=61.0
Q ss_pred ccccCCCCCchhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCceeEEEEecCCCcchHHHhhcee
Q 041549 83 WQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQLS 162 (218)
Q Consensus 83 ~tl~~sR~~~al~~w~~l~~~G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~~~~~~~iV~Fr~~~~~~~~~~~Ln~~~ 162 (218)
..++|=|++. .+..+.-+.+|.+-..+.++..+ .+.+.+.+++. .++++..|.... +.+.+..+ +..--..-
T Consensus 27 ~~ipGFRkGK-vP~~~i~k~~g~~i~~e~~~~li--~~~~~~~~~~~-~~~~~~~p~~~~--~~~~~~~~--~~~~~~~~ 98 (408)
T TIGR00115 27 VKIPGFRKGK-VPRSVVEKRYGKEVRQEALNELL--QEAFSEAVKEE-KIRPIGQPEIEV--KEIEDGKD--LEFTAEFE 98 (408)
T ss_pred CCCCCccCCC-CCHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHhC-CCCcCCCCcccc--ccccCCCC--EEEEEEEE
Confidence 3578877776 45556677899765566565433 36677777774 788887665432 22221110 00000000
Q ss_pred ----ecceEECCEEEEEEecCCCCCcHHHHHHHHHHHHHHHHHH
Q 041549 163 ----LTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202 (218)
Q Consensus 163 ----vs~~~~~g~~~lR~~~~n~~tt~~di~~l~~~l~~~~~~~ 202 (218)
+....+.+ +-+.....-.|+++|+..++.+.+-...+
T Consensus 99 v~Pev~l~~y~~---i~v~~~~~~vtde~vd~~i~~l~~~~a~~ 139 (408)
T TIGR00115 99 VYPEVELGDYKG---IEVEKPEVEVTDEDVDEELEKLREQNATL 139 (408)
T ss_pred ecCceecCCCCc---eEEEeccCCCCHHHHHHHHHHHHHhCCcc
Confidence 11112334 33333346789999999999887765554
No 377
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=20.46 E-value=53 Score=29.75 Aligned_cols=28 Identities=25% Similarity=0.086 Sum_probs=23.4
Q ss_pred CCCCeeeecccccCCCccceeEEEEeCCc
Q 041549 20 ELADSVSLNPHKWFLTNMDCGCLWVKHSS 48 (218)
Q Consensus 20 ~~aDSi~~d~HK~l~~P~~~g~l~~r~~~ 48 (218)
.+||=+++++||.|.+|- +|++.=|..-
T Consensus 212 ~GaDLV~~SgdKllgGPq-aGii~GkKel 239 (395)
T COG1921 212 LGADLVSFSGDKLLGGPQ-AGIIVGKKEL 239 (395)
T ss_pred cCCCEEEEecchhcCCCc-cceEechHHH
Confidence 569999999999999998 6777766553
No 378
>PF15051 FAM198: FAM198 protein
Probab=20.41 E-value=1.5e+02 Score=26.01 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEe
Q 041549 104 GYSGLMYHIRSDVNMAKRFEAMVAKDERFETV 135 (218)
Q Consensus 104 G~~g~~~~i~~~~~la~~l~~~L~~~~~~el~ 135 (218)
|..|+...|+..-+.++.|..+++++ +++++
T Consensus 293 G~~Gi~~li~~ie~R~kiLl~yi~~h-~~~~~ 323 (326)
T PF15051_consen 293 GRQGIEKLIDVIERRAKILLTYINAH-GLKVL 323 (326)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHc-CCeec
Confidence 68999999999999999999999997 88776
Done!