RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 041549
(218 letters)
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 225 bits (574), Expect = 2e-71
Identities = 98/213 (46%), Positives = 141/213 (66%), Gaps = 19/213 (8%)
Query: 5 SACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNR 64
SACICPE+RHY++GVE ADS ++N HKWFLTN DC LWVK + L+ S ST + ++N+
Sbjct: 281 SACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNK 340
Query: 65 SPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEA 124
AS ++ V+DYKDWQI L RRF++LKLW V+R +G L +IR+ + +AK FE
Sbjct: 341 --ASQANS----VVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQ 394
Query: 125 MVAKDERFETVEPRKCALVCFRLKP--KRESDGSELN-----------QLSLTQATLGGV 171
+VA+D RFE V PR +LVCFRL P E +G++LN ++ ++ L G
Sbjct: 395 LVAQDSRFEVVTPRIFSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHTVLSGK 454
Query: 172 YVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLL 204
YV+R ++G LT++RH+ K++Q++A +LL
Sbjct: 455 YVLRFAVGAPLTEERHVTAAWKVLQDEASKLLG 487
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 176 bits (449), Expect = 4e-54
Identities = 71/144 (49%), Positives = 85/144 (59%), Gaps = 6/144 (4%)
Query: 5 SACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNR 64
SA ICPEFRH+L G+E ADS S NPHKW L +DC LWV+ L + + + +
Sbjct: 236 SAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEYLGHN 295
Query: 65 SPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEA 124
S + DY DWQI LSRRF+ LKLW V+R +G GL IR V +AK FEA
Sbjct: 296 DKQSDVAV------DYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHVELAKYFEA 349
Query: 125 MVAKDERFETVEPRKCALVCFRLK 148
+V KD RFE R LVCFRLK
Sbjct: 350 LVRKDSRFEICAERGLGLVCFRLK 373
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 160 bits (405), Expect = 3e-46
Identities = 82/211 (38%), Positives = 123/211 (58%), Gaps = 19/211 (9%)
Query: 5 SACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNR 64
+ACICPE+R +++G+E ADS ++N HKW N C LWVK L+D+ T + + +
Sbjct: 329 NACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFK 388
Query: 65 SPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEA 124
T V++YKDWQI+LSRRF++LKLW V+R +G L IR VN+AK FE
Sbjct: 389 VSKKDT------VVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFED 442
Query: 125 MVAKDERFETVEPRKCALVCFRLKP--KRESDGSELN-----------QLSLTQATLGGV 171
VA+D FE V R +LVCFRL P E +E N ++ ++ L G
Sbjct: 443 YVAQDPSFEVVTTRYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGK 502
Query: 172 YVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202
+V+R ++G LT+++H+ + ++IQ+ A +
Sbjct: 503 FVLRFAVGAPLTEEKHVTEAWQIIQKHASKF 533
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 118 bits (299), Expect = 4e-32
Identities = 53/202 (26%), Positives = 76/202 (37%), Gaps = 56/202 (27%)
Query: 5 SACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNR 64
PE RH G+E DS+S++PHK+ L + C + V+
Sbjct: 190 FLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR------------------- 230
Query: 65 SPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEA 124
ALKLW +R+ G G HI V++AK
Sbjct: 231 ----------------------------ALKLWATLRRFGRDGYGEHIDRIVDLAKYLAE 262
Query: 125 MVAKDERFETVEPRKCALVCFRLKPKRESDG------SELNQLS---LTQATLGGVYVIR 175
++ D FE + +LVCFRLKP + D LN+ + TLGG V+R
Sbjct: 263 LIRADPGFELLGEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPNVLR 322
Query: 176 CSIGTTLTQDRHIDDLRKLIQE 197
+ LT D L + I+
Sbjct: 323 FVVTNPLTTRDDADALLEDIER 344
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 69.3 bits (170), Expect = 7e-14
Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 14/152 (9%)
Query: 8 ICPEFRHY-LNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSP 66
E G+E DS++++ HK+ L + CG + + L I+
Sbjct: 252 PFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALR-------RILIFADY 304
Query: 67 ASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMV 126
+ ++ R+ AL L+ +R+ G G + + +A+ +
Sbjct: 305 YLPGGG----IPNFTILGSRPGRQ--ALALYANLRRLGREGYRKLLDRTLELARYLAEEL 358
Query: 127 AKDERFETVEPRKCALVCFRLKPKRESDGSEL 158
K FE V + +V FRLK ++
Sbjct: 359 EKLGDFELVNEPELPIVAFRLKDDEDTLADLS 390
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 41.2 bits (97), Expect = 2e-04
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 12 FRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTS 71
+RH L G+E ADSV+++ HK M G + K + + + I+R S +
Sbjct: 314 YRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSH 373
Query: 72 TNVAPVIDYKDWQIALSRRFKALKLWT---VIRKHGYSGLMYHIRSDVNMAKRFEAMVAK 128
T + SR A+ ++ +I + GY L I + AK F ++ +
Sbjct: 374 T------------LEGSRPGMAMLVYAGLHIIGRKGYELL---IDQSIEKAKYFADLIQQ 418
Query: 129 DERFETV-EPRKCALVCFRLKPK 150
FE V EP C L+ +R P+
Sbjct: 419 QPDFELVTEPELC-LLTYRYVPE 440
>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional.
Length = 380
Score = 35.0 bits (81), Expect = 0.019
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 30/104 (28%)
Query: 22 ADSVSLNPHKWFLTNMDCG-----CLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAP 76
DS++++ HK+ + M CG +V+ S VD
Sbjct: 222 IDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVD------------------------ 257
Query: 77 VIDYKDWQIALSRR-FKALKLWTVIRKHGYSGLMYHIRSDVNMA 119
I +D I+ SR AL LW IR G GL ++ ++MA
Sbjct: 258 YIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMA 301
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 35.0 bits (81), Expect = 0.021
Identities = 32/140 (22%), Positives = 49/140 (35%), Gaps = 43/140 (30%)
Query: 10 PEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFL-----------VDSQSTKS 58
P F L GV S++++PHK L+ + G + + S+L V Q+T
Sbjct: 207 PPFDFSLPGV---QSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVDAPYLTVKKQAT-- 261
Query: 59 DIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNM 118
I RS AS+ +T + VI+ G G + +
Sbjct: 262 -ITGTRSGASAAAT------------------------YAVIKYLGREGYRKIVAECMEN 296
Query: 119 AKRFEAMVAKDERFETV-EP 137
+ K FE V EP
Sbjct: 297 TRYL-VEELKKIGFEPVIEP 315
>gnl|CDD|178608 PLN03046, PLN03046, D-glycerate 3-kinase; Provisional.
Length = 460
Score = 34.1 bits (78), Expect = 0.043
Identities = 17/70 (24%), Positives = 30/70 (42%)
Query: 14 HYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTN 73
S L+ K L+ CGC W++ +S + D +T + R S +S+
Sbjct: 63 RVAASCSSYPSSKLSSRKTHLSCPGCGCSWIQDNSMVHDYATTAATSKRCSSLPTSSPAL 122
Query: 74 VAPVIDYKDW 83
V+ V D ++
Sbjct: 123 VSSVQDLYEF 132
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 28.7 bits (65), Expect = 2.1
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 19/82 (23%)
Query: 10 PEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFL-----------VDSQSTKS 58
P F L GV DS++++PHK L + G + + S+L Q+T
Sbjct: 202 PNFDFSLPGV---DSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTSKKQAT-- 256
Query: 59 DIMRNRSPASSTSTNVAPVIDY 80
+ RS A +T A V+ Y
Sbjct: 257 -LTGTRSGAGVAAT-YA-VMKY 275
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid
CoA ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions. Members of this
family include DitJ from Pseudomonas and similar
proteins.
Length = 421
Score = 28.7 bits (65), Expect = 2.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 85 IALSRRFKALKLWTVIRKHG 104
+ L RF A + W +RKHG
Sbjct: 151 LVLLPRFSASRFWDQVRKHG 170
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 28.0 bits (63), Expect = 4.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 85 IALSRRFKALKLWTVIRKHGYSGLMY 110
+AL R+F A + W +R++G + Y
Sbjct: 151 LALRRKFSASQFWPDVRRYGATAFQY 176
>gnl|CDD|222888 PHA02582, 10, baseplate wedge subunit and tail pin; Provisional.
Length = 604
Score = 27.7 bits (62), Expect = 4.8
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 178 IGTTLTQDRHIDDLRKLIQEKADRLLLLQEPENTR 212
IGT L D I+EK D++ L E E T
Sbjct: 388 IGTLLEWDGDGG-----IKEKTDKIYLSNEDEVTL 417
>gnl|CDD|183106 PRK11375, PRK11375, allantoin permease; Provisional.
Length = 484
Score = 27.4 bits (61), Expect = 6.4
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 2 AYRSACICPEFRHYLNGVELADSVSLNPHKW-FLTNMD 38
Y+ A + P Y NGV +A +SL W + N D
Sbjct: 334 GYQIAALAPTKLTYKNGVLIASIISLLICPWKLMENQD 371
>gnl|CDD|223776 COG0704, PhoU, Phosphate uptake regulator [Inorganic ion transport
and metabolism].
Length = 240
Score = 26.6 bits (59), Expect = 9.9
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 185 DRHIDDLRKLIQEKADRLLLLQEP 208
D IDDL I+E+A RL+ LQ+P
Sbjct: 57 DEKIDDLEAEIEEEAIRLIALQQP 80
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.134 0.408
Gapped
Lambda K H
0.267 0.0781 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,675,886
Number of extensions: 932555
Number of successful extensions: 807
Number of sequences better than 10.0: 1
Number of HSP's gapped: 799
Number of HSP's successfully gapped: 20
Length of query: 218
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 125
Effective length of database: 6,812,680
Effective search space: 851585000
Effective search space used: 851585000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)