RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 041549
(218 letters)
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 228 bits (582), Expect = 6e-73
Identities = 78/211 (36%), Positives = 111/211 (52%), Gaps = 12/211 (5%)
Query: 5 SACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNR 64
SA ICPEFRH LNGVE ADS + NPHKW L N DC +WVK + L + +++
Sbjct: 277 SAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHS 336
Query: 65 SPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEA 124
S + DY+ WQ+ L RRF++LK+W V R +G GL +IR V ++ FEA
Sbjct: 337 HQGS------GLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEA 390
Query: 125 MVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQLS------LTQATLGGVYVIRCSI 178
V +D RFE LVCFRLK + + L +++ L L G +V+R +I
Sbjct: 391 FVLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAI 450
Query: 179 GTTLTQDRHIDDLRKLIQEKADRLLLLQEPE 209
+ + H+ + I+ A LL +E +
Sbjct: 451 CSRKVESGHVRLAWEHIRGLAAELLAAEEGK 481
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 225 bits (575), Expect = 6e-72
Identities = 76/205 (37%), Positives = 109/205 (53%), Gaps = 14/205 (6%)
Query: 5 SACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNR 64
SA ICPE+RH + G+E ADS + NPHKW L N DC +W+K S++V++ + +++
Sbjct: 276 SAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHD 335
Query: 65 SPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEA 124
S DY+ WQI L RRF+ALKLW V+R +G L HIR N AK+F
Sbjct: 336 MQGS--------APDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGD 387
Query: 125 MVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQLS------LTQATLGGVYVIRCSI 178
+ D RFE LVCFRLK E + + L +++ L A + VY +R +I
Sbjct: 388 LCVADSRFELAAEINMGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAI 447
Query: 179 GTTLTQDRHIDDLRKLIQEKADRLL 203
+ TQ ++ K + AD +
Sbjct: 448 CSRFTQSEDMEYSWKEVSAAADEME 472
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 224 bits (573), Expect = 1e-71
Identities = 72/210 (34%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 5 SACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNR 64
+A +CPEFR +L G+E ADS + NP KW + + DC WVK L + S +R+
Sbjct: 283 TAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHA 342
Query: 65 SPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEA 124
+ D+ WQI LSRRF+++KLW VIR G L H+R MAK FE+
Sbjct: 343 NSGV--------ATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFES 394
Query: 125 MVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ-----------LSLTQATLGGVYV 173
+V D FE R LV FRLK + L + L L AT+ +
Sbjct: 395 LVRNDPSFEIPAKRHLGLVVFRLKG-----PNSLTENVLKEIAKAGRLFLIPATIQDKLI 449
Query: 174 IRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203
IR ++ + T I LI++ A +L
Sbjct: 450 IRFTVTSQFTTRDDILRDWNLIRDAATLIL 479
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 215 bits (549), Expect = 7e-68
Identities = 47/213 (22%), Positives = 79/213 (37%), Gaps = 22/213 (10%)
Query: 2 AYRSACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIM 61
AY A I + L GVE A S+S++ HK F + CG L V S +D +
Sbjct: 296 AYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYL 354
Query: 62 RNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKR 121
+ + D IA ++RF ALK++ ++ G L +
Sbjct: 355 NREHDE---------LPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLE 405
Query: 122 FEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQ-----------LSLTQATLGG 170
M+ +++FE + + V FR + +D ELN+ L + + G
Sbjct: 406 VADMIRTNDQFELLAEPSLSTVLFRATHE-TADLDELNKALRLEALTRGIAVLGETIVDG 464
Query: 171 VYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203
++ +I + L I A L+
Sbjct: 465 KTALKFTILNPCLTTSDFESLLSKINMLAVELV 497
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 210 bits (536), Expect = 6e-66
Identities = 45/223 (20%), Positives = 69/223 (30%), Gaps = 30/223 (13%)
Query: 5 SACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNR 64
+ + RH LNG+E A+SV+ NPHK + C + VK L + +
Sbjct: 287 GLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQ- 345
Query: 65 SPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEA 124
D D I R K W + + G G I + +A+ A
Sbjct: 346 -----PDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYA 400
Query: 125 MVAKDERFETV--EPRKCALVCFRLKPKR-------ESDGSELNQLSL------------ 163
+ E FE V + VCF P+ +L++++
Sbjct: 401 KIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTT 460
Query: 164 ---TQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL 203
Q R I ID L + I+ L
Sbjct: 461 MVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDLH 503
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 205 bits (524), Expect = 5e-64
Identities = 46/221 (20%), Positives = 78/221 (35%), Gaps = 29/221 (13%)
Query: 5 SACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKH-SSFLVDSQSTKSDIMRN 63
S + RH L+G++ ADSV+ NPHK + C L ++ S+ L +++ +
Sbjct: 301 SVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQ 360
Query: 64 RSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFE 123
+ +D D + RR LKLW + + G GL I +A+
Sbjct: 361 QDKFYDV------ALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLV 414
Query: 124 AMVAKDERFETVEPRKCALVCFRLKPKRESDGSE-------LNQLS-------------- 162
+ K E FE V + VCF P E L++++
Sbjct: 415 EEMKKREGFELVMEPEFVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMM 474
Query: 163 LTQATLGG-VYVIRCSIGTTLTQDRHIDDLRKLIQEKADRL 202
+ G R + + +D L ++ L
Sbjct: 475 IGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 515
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 56.2 bits (135), Expect = 1e-09
Identities = 28/214 (13%), Positives = 60/214 (28%), Gaps = 53/214 (24%)
Query: 6 ACICPEFRHYLNGV--ELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRN 63
A + L D+V + K LT + G ++ + F+ + +
Sbjct: 271 AIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLS----YPG 326
Query: 64 RSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFE 123
R+ A+ + + G + +++ N K +
Sbjct: 327 RASATPV-----------------------VNTLVSLLSMGSKNYLELVKNQKNSKKLLD 363
Query: 124 AMVAK-----DERFETVEPRKCALVCFRLKPKRESDGSELNQLSLT-------QATLGGV 171
++ +F VE + + P ++L L +T G
Sbjct: 364 ELLNDLSKKTGGKFLDVESPIASCISVNSDPVE--IAAKLYNLRVTGPRGIKKTDHFGNC 421
Query: 172 Y---------VIRCSIGTTLTQ-DRHIDDLRKLI 195
Y V+ +IG + L K++
Sbjct: 422 YLGTYTHDYIVMNAAIGVRTEDIVNSVSKLEKIL 455
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 53.4 bits (128), Expect = 1e-08
Identities = 30/198 (15%), Positives = 57/198 (28%), Gaps = 30/198 (15%)
Query: 10 PEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASS 69
V S+S + HK+ + ++S
Sbjct: 259 KNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLR---------------MHQY 303
Query: 70 TSTNVAPVIDYKDWQIALSRR-FKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAK 128
Y +A SR + W + G +G + + V A +F+ + +
Sbjct: 304 YVNPAWTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQE 363
Query: 129 D-ERFETVEPRKCALVCFRLKPKRESDGSE--------LNQLSLTQATLGGVYVIRCSIG 179
+ + + + +++ F K + S+ N L A + R S
Sbjct: 364 NIPDLDIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHFNALQKPVAL--HMAFTRLSAH 421
Query: 180 TTLTQDRHIDDLRKLIQE 197
D D LR +QE
Sbjct: 422 VV---DEICDILRTTVQE 436
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 53.1 bits (128), Expect = 1e-08
Identities = 24/198 (12%), Positives = 56/198 (28%), Gaps = 30/198 (15%)
Query: 11 EFRHYLNGVEL-------ADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRN 63
+ ++ GV DS++++PHK + G + K + +
Sbjct: 219 DDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDVDAPYLTET 278
Query: 64 RSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFE 123
R + + V+R G G + +
Sbjct: 279 RQATILGTRVGFGGA----------------CTYAVLRYLGREGQRKIVNECMENTLYLY 322
Query: 124 AMVAKDERFETVEPRKCALVCFRLKPKRE-SDGSELNQLSLTQATLGGVYVIRCSI--GT 180
+ ++ +EP +V + +E +L + + V +R +
Sbjct: 323 KKLKENNFKPVIEPILN-IVAIEDEDYKEVCK--KLRDRGIYVSVCNCVKALRIVVMPHI 379
Query: 181 TLTQ-DRHIDDLRKLIQE 197
D I+ L + ++
Sbjct: 380 KREHIDNFIEILNSIKRD 397
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 52.6 bits (126), Expect = 3e-08
Identities = 22/143 (15%), Positives = 37/143 (25%), Gaps = 19/143 (13%)
Query: 10 PEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASS 69
+ +E SVS + HK+ + + L +D
Sbjct: 291 YPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADW--------- 341
Query: 70 TSTNVAPVIDYKDWQIALSRR-FKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAK 128
P Y A SR + W + G G + R + A R +A V
Sbjct: 342 ------PGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRA 395
Query: 129 DERFETVEPRKCALVCFRLKPKR 151
+ + L +
Sbjct: 396 IPSLKILGD---PLWVIAVASDE 415
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 45.8 bits (108), Expect = 4e-06
Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 32/196 (16%)
Query: 18 GVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPASSTSTNVAPV 77
+ L S++++ HK+ L G + ++ L + +
Sbjct: 264 RLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHIN---------------YLG 308
Query: 78 IDYKDWQIALSRR-FKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETV- 135
D + + S+ + + + + + G+ G + + + K ERF V
Sbjct: 309 ADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVS 368
Query: 136 EPRKCALVCFRLKPKRESD-----------GSELNQLSLTQATLGGVYVIRCSIGTTLTQ 184
+ LV F LK G + ++ + V+R I ++
Sbjct: 369 KDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQ-HITVLRVVIREDFSR 427
Query: 185 ---DRHIDDLRKLIQE 197
+R + D+ K+++E
Sbjct: 428 TLAERLVIDIEKVMRE 443
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.004
Identities = 33/231 (14%), Positives = 72/231 (31%), Gaps = 64/231 (27%)
Query: 10 PEFRHYLNGVELA---DSVSLNPHKWFLTNMDCGCLWVKHSSF----LVDSQSTKSDIMR 62
E+R L+ S + P +W +V+ S + +
Sbjct: 369 AEYRKMF--DRLSVFPPSAHI-PTILL------SLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 63 NRSPASSTSTNVAPVIDYK---DWQIALSRRF-------KALKLWTVIRKH--GY--SGL 108
++ + ++ ++ K + + AL R K +I + Y S +
Sbjct: 420 QPKESTISIPSIY--LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 109 MYHIRSDVNMAKRFEAM--VAKDERFETVEPRKCALVCFRLKPKRESDGSELNQLSLTQA 166
+H+++ + +R V D RF L+ K D + N
Sbjct: 478 GHHLKN-IEHPERMTLFRMVFLDFRF--------------LEQKIRHDSTAWNASGSILN 522
Query: 167 TLGGV-----YVIRCSIGTTLTQDRHIDDLRKLIQEKADRLL------LLQ 206
TL + Y+ +R ++ + + + + L+ LL+
Sbjct: 523 TLQQLKFYKPYICD----NDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
Score = 33.7 bits (76), Expect = 0.043
Identities = 29/183 (15%), Positives = 51/183 (27%), Gaps = 36/183 (19%)
Query: 48 SFLVDSQSTKSDIMRNRSPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSG 107
FL+ T R P+ T I+ +D ++ F V R Y
Sbjct: 92 KFLMSPIKT-----EQRQPSMMTRM----YIEQRDRLYNDNQVFAKY---NVSRLQPYLK 139
Query: 108 L---MYHIRSDVN-----MA---KR-FEAMVAKDERFETVEPRKCALVCFRLKPKRESDG 155
L + +R N + K V + + K + + S
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK---NCNSPE 196
Query: 156 SELNQLSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLLQEPENTRDYL 215
+ L L + + R H +++ I L L + + + L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSD---------HSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 216 LTL 218
L L
Sbjct: 248 LVL 250
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.48
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 46 HSSFLVDSQST-KSDIMRNRSPASSTSTNVAPVIDYKDWQ 84
HS LV + D+++N ++ + PV D D
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQI-PVYDTFDGS 466
Score = 30.0 bits (67), Expect = 0.69
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 16/66 (24%)
Query: 100 IRKHGYSGLMYHIRSDVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELN 159
IR YS +++ D + ++ F+ + + F S+ L+
Sbjct: 1684 IR-ENYSAMIFETIVD--------GKLKTEKIFKEINEHSTSY-TF------RSEKGLLS 1727
Query: 160 QLSLTQ 165
TQ
Sbjct: 1728 ATQFTQ 1733
Score = 29.6 bits (66), Expect = 0.90
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 157 ELNQLSLTQATLGGVYVIRCSIGTTLTQ-DRHIDDLRKLIQEKADRLLLLQEPENT--RD 213
EL L T L G + + TL++ R D K+ + + L L+ P NT +D
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSA--ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 214 YLLT 217
YLL+
Sbjct: 230 YLLS 233
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle,
structural genomics, BSGC structure funded by NIH,
protein structure initiative; 2.90A {Aquifex aeolicus}
SCOP: a.7.12.1 PDB: 1t8b_A
Length = 227
Score = 29.1 bits (66), Expect = 0.95
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 184 QDRHIDDLRKLIQEKADRLLLLQEP 208
D ID L I+ + R++ L +P
Sbjct: 52 GDDTIDLLEVDIERRCIRMIALYQP 76
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake
regulator, structural genomics, protein structure
initiative, PSI; 2.50A {Geobacillus stearothermophilus}
SCOP: a.7.12.1
Length = 217
Score = 28.7 bits (65), Expect = 1.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 184 QDRHIDDLRKLIQEKADRLLLLQEP 208
D ID L + + + A L+ Q+P
Sbjct: 48 GDGSIDALEEEVNDFALWLIAAQQP 72
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein,
structural genomics, PSI-2, PROT structure initiative;
2.40A {Streptococcus pneumoniae}
Length = 216
Score = 28.7 bits (65), Expect = 1.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 184 QDRHIDDLRKLIQEKADRLLLLQEP 208
+D I+ + I+ RLL LQ+P
Sbjct: 48 KDHAINQGQSAIELTCARLLALQQP 72
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport,
PST, structural genomics, berkeley STRU genomics center,
BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Length = 235
Score = 28.8 bits (65), Expect = 1.2
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 184 QDRHIDDLRKLIQEKADRLLLLQEP 208
+ +D + IQEKA +L L P
Sbjct: 48 DEEVVDQMEVEIQEKAMEVLGLFSP 72
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT
choanoflagellates; 2.80A {Monosiga brevicollis}
Length = 650
Score = 26.9 bits (58), Expect = 6.5
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 159 NQLSLTQATLGGVYVIRCSIGTTLTQDRHIDDLRKLIQEKADRLLLLQEPENTRDYLL 216
+LS T+ ++R S +T +R L+K I + L+ + L
Sbjct: 167 RRLSTLCTTMNVAPIVRYSSTSTPGTERMAMQLQKEIDMSVSQGLINAREGKLKSQFL 224
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 128
Score = 26.0 bits (57), Expect = 7.5
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 123 EAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQLSLTQATLGGVY---VIRCSIG 179
A+ + +E + + FR+ K E L L L Y + SI
Sbjct: 20 AAIFCRPHEWEVLSRSETDGTVFRIHTKAEGFMDADIPLEL-VFHLPVNYPSCLPGISIN 78
Query: 180 TTLTQDRHIDDLRKLIQEKADRLL 203
+ +++ + E+A+ LL
Sbjct: 79 SEQLTRAQCVTVKEKLLEQAESLL 102
>2ha9_A UPF0210 protein SP0239; structural genomics, PSI-2, protei
structure initiative, midwest center for structural
genomic unknown function; 2.70A {Streptococcus
pneumoniae} SCOP: c.7.1.5
Length = 446
Score = 26.4 bits (58), Expect = 8.4
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 86 ALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEA 124
L+ + K + + G SG + D M +
Sbjct: 305 LLNDQVKKGGVMACNQVGGLSGAFIPVSEDEGMIAAVQN 343
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.408
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,196,542
Number of extensions: 172616
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 306
Number of HSP's successfully gapped: 23
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)