RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 041549
(218 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 138 bits (347), Expect = 4e-39
Identities = 76/204 (37%), Positives = 107/204 (52%), Gaps = 12/204 (5%)
Query: 6 ACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRS 65
A ICPEFRH LNGVE ADS + NPHKW L N DC +WVK + L + +++
Sbjct: 278 AFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSH 337
Query: 66 PASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAM 125
S + DY+ WQ+ L RRF++LK+W V R +G GL +IR V ++ FEA
Sbjct: 338 QGS------GLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAF 391
Query: 126 VAKDERFETVEPRKCALVCFRLKPKRESDGSELNQLS------LTQATLGGVYVIRCSIG 179
V +D RFE LVCFRLK + + L +++ L L G +V+R +I
Sbjct: 392 VLQDPRFEVCAEVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAIC 451
Query: 180 TTLTQDRHIDDLRKLIQEKADRLL 203
+ + H+ + I+ A LL
Sbjct: 452 SRKVESGHVRLAWEHIRGLAAELL 475
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 61.4 bits (148), Expect = 8e-12
Identities = 29/218 (13%), Positives = 62/218 (28%), Gaps = 37/218 (16%)
Query: 1 QAYRSACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDI 60
A + + S+S + HK+ L + CG + + L D
Sbjct: 244 SGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDY 303
Query: 61 MRNRSPASSTSTNVAPVIDYKDWQIALSR-RFKALKLWTVIRKHGYSGLMYHIRSDVNMA 119
+ + I SR + + + + G G + +A
Sbjct: 304 LGG---------------QIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVA 348
Query: 120 KRFEAMVAKDERFETVEPRKCA----LVCFRLKPKRESD-------------GSELNQLS 162
+AK +E + + VCF+LK + G ++ +
Sbjct: 349 AYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFT 408
Query: 163 LTQATLGGVYVIRCSIGTTLTQ---DRHIDDLRKLIQE 197
L + V+R + ++D + ++
Sbjct: 409 LG-GEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKY 445
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 41.1 bits (95), Expect = 5e-05
Identities = 25/204 (12%), Positives = 54/204 (26%), Gaps = 12/204 (5%)
Query: 5 SACICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNR 64
+ C V D+ + K F+ + + + F+ S +
Sbjct: 236 QSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFI-QDISKMYPGRASA 294
Query: 65 SPASSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRK----HGYSGL------MYHIRS 114
SP+ + + ++ R+ + L T ++K H L + +
Sbjct: 295 SPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMT 354
Query: 115 DVNMAKRFEAMVAKDERFETVEPRKCALVCFRLKPKRESDGSELNQLSLTQATLGGVYVI 174
+ + V + A + S + +S
Sbjct: 355 LKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAYLNA 414
Query: 175 RCSIGTTLTQ-DRHIDDLRKLIQE 197
+IG + D I L K +
Sbjct: 415 AAAIGMKMQDVDLFIKRLDKCLNI 438
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 36.8 bits (84), Expect = 0.001
Identities = 23/204 (11%), Positives = 55/204 (26%), Gaps = 42/204 (20%)
Query: 8 ICPEFRHYLNGVELADSVSLNPHKWFLTNMDCGCLWVKHSSFLVDSQSTKSDIMRNRSPA 67
E D+V + K LT + G ++ ++ ++ S +
Sbjct: 256 YYLEKLKKA-FKYRVDAVVSSSDKNLLTPIGGGLVYSTD-----------AEFIKEISLS 303
Query: 68 SSTSTNVAPVIDYKDWQIALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEAMVA 127
+ PV++ L + Y L+ + ++ + ++
Sbjct: 304 YPGRASATPVVN-------------TLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLS 350
Query: 128 KDERFETVEPRKCALVCFRLKPKRESDGSELNQLSLT----QATLGGVY----------- 172
K + ++ C + ++L L +T
Sbjct: 351 KKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDY 410
Query: 173 -VIRCSIGTTLTQ-DRHIDDLRKL 194
V+ +IG + L K+
Sbjct: 411 IVMNAAIGVRTEDIVNSVSKLEKI 434
>g1tii.1 d.166.1.1 (A:,C:) Heat-labile toxin, A-chain {Escherichia
coli, type IIB [TaxId: 562]}
Length = 223
Score = 26.4 bits (58), Expect = 2.6
Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 79 DYKDWQIALSRRFK-ALKLWTVIRKHGYSGLMYHIRSDVNM 118
Y D ++ + + A L + +Y + + N+
Sbjct: 52 RYNDGYVSTTTTLRQAHLLGQNMLGGYNEYYIYVVAAAPNL 92
>d2ha9a1 c.7.1.5 (A:1-440) Uncharacterized protein SP0239
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 440
Score = 25.5 bits (56), Expect = 5.6
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 86 ALSRRFKALKLWTVIRKHGYSGLMYHIRSDVNMAKRFEA 124
L+ + K + + G SG + D M +
Sbjct: 304 LLNDQVKKGGVMACNQVGGLSGAFIPVSEDEGMIAAVQN 342
>d1zx3a1 a.43.1.6 (A:10-95) Hypothetical protein NE0241
{Nitrosomonas europaea [TaxId: 915]}
Length = 86
Score = 24.4 bits (52), Expect = 5.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 32 WFLTNMDCGCLWVKHSSFLVDSQSTKSDI 60
W + NMD G +++ S SQ T +I
Sbjct: 12 WIMENMDSGVIYLLESWLKAKSQETGKEI 40
>d1nlqa_ b.121.3.1 (A:) Chromatin decondensation protein 1 (Crp1,
Nlp) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 105
Score = 24.1 bits (52), Expect = 7.1
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 150 KRESDGSELNQLSLTQATLG 169
+ D + +L + Q LG
Sbjct: 19 DVDEDYARGQKLVIKQILLG 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.408
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 789,750
Number of extensions: 33585
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 10
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)