BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041551
(808 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
Query: 18 SSRNSNKYDVFLSFRGEDTRDNFTSHLYSALWHNNIETFIDN-DLKRGDEISQSLLDTXX 76
SS + KYDVFLSFRG DTR NF S LY L +I TF D+ +L+ G S L
Sbjct: 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIE 61
Query: 77 XXXXXXXXXXXRYASSGWCLDELSKIFECKHDYGQIVIPVFCRVDPSHVRRQTGTFGDYF 136
YA+S WCLDEL I + + V+P+F V+P+HVR QTG + F
Sbjct: 62 VSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQF 121
Query: 137 SKLGERY-PEKMQRWGNTLTEAANLSG 162
K R PEK+ +W LT A LSG
Sbjct: 122 KKHASREDPEKVLKWRQALTNFAQLSG 148
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 10 VSVMAPPSSSRNSNKYDVFLSFRGEDTRDNFTSHLYSALWHNNIETFIDND-LKRGDEIS 68
+S PS S S +Y+VFLSFRG DTR+ FT LY +L I TF D+D L +G EI
Sbjct: 21 ISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIG 80
Query: 69 QSLLDTXXXXXXXXXXXXXRYASSGWCLDELSKIFECK-HDYGQIVIPVFCRVDPSHVRR 127
+LL YA S WCL EL++I + D +I++P+F VDPS VR
Sbjct: 81 PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140
Query: 128 QTGTFGDYFSKLGERYP-EKMQRWGNTLTEAANLSGF 163
QTG + F K ++ + +Q W + L + +L G+
Sbjct: 141 QTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGW 177
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 46/221 (20%)
Query: 512 LVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-------------LSRAKNL 558
L +L + R+ ++ L + L L+E+ + LT+LP+ L ++L
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188
Query: 559 EILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHS-KHLKELSLRGCSNLK 617
+ W G SL + + +Q L L+ + L++L +IH L+EL LRGC+ L+
Sbjct: 189 RLEWT-GIRSLPASIANLQNLKSLKIRN----SPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 618 IFPEITSCHMWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESI 677
+P I + L+ L + DCS L ++ I +L LE +
Sbjct: 244 NYPPIFGGR---------------------APLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
Query: 678 DISNCSNLKRFLEIPSCNIDGGFAFCIVV--PHCWEPCETH 716
D+ C NL R +PS I A CI++ PH + H
Sbjct: 283 DLRGCVNLSR---LPSL-IAQLPANCIILVPPHLQAQLDQH 319
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 495 LEWA---RCPLKTLNICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD 551
LEW P N+ + L SLK+ S + L + L L+E+DL +L P
Sbjct: 190 LEWTGIRSLPASIANL--QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247
Query: 552 L--SRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI 600
+ RA L+ L L+ C +L+ I L +LE LDL C++L+ LP+ I
Sbjct: 248 IFGGRAP-LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
>pdb|2ZY5|A Chain A, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|B Chain B, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|C Chain C, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|D Chain D, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|E Chain E, R487a Mutant Of L-Aspartate Beta-Decarboxylase
pdb|2ZY5|F Chain F, R487a Mutant Of L-Aspartate Beta-Decarboxylase
Length = 546
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 429 LDVFDQIRMHDLLRDMGREIVRNESVDYPGKRSRLWHHNDIYEVLKKNTV--SNNKFSIG 486
L++ ++I ++R+MG + + +ESV+ I+E LK N + + +K +IG
Sbjct: 141 LNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIG 200
Query: 487 VPF--AEVRHLEWARCPLKTLNICAEKLVSLKMPRSKVQQLWD 527
+P + E A+ L+ + I A+ ++ + P S++ +L D
Sbjct: 201 MPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD 243
>pdb|2ZY3|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|B Chain B, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|C Chain C, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|D Chain D, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|E Chain E, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY3|F Chain F, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|A Chain A, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|B Chain B, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|C Chain C, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|D Chain D, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|E Chain E, Dodecameric L-Aspartate Beta-Decarboxylase
pdb|2ZY4|F Chain F, Dodecameric L-Aspartate Beta-Decarboxylase
Length = 546
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 429 LDVFDQIRMHDLLRDMGREIVRNESVDYPGKRSRLWHHNDIYEVLKKNTV--SNNKFSIG 486
L++ ++I ++R+MG + + +ESV+ I+E LK N + + +K +IG
Sbjct: 141 LNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIG 200
Query: 487 VPF--AEVRHLEWARCPLKTLNICAEKLVSLKMPRSKVQQLWD 527
+P + E A+ L+ + I A+ ++ + P S++ +L D
Sbjct: 201 MPVFTPYIEIPELAQYALEEVAINADPSLNWQYPDSELDKLKD 243
>pdb|3FDD|A Chain A, The Crystal Structure Of The Pseudomonas Dacunhae
Aspartate-Beta- Decarboxylase Reveals A Novel Oligomeric
Assembly For A Pyridoxal-5- Phosphate Dependent Enzyme
Length = 533
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 429 LDVFDQIRMHDLLRDMGREIVRNESVDYPGKRSRLWHHNDIYEVLKKNTV--SNNKFSIG 486
L++ ++I ++R+MG + + +ESV+ I+E +K N + + +K +IG
Sbjct: 141 LNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESMKVNGLLKAGDKVAIG 200
Query: 487 VPF--AEVRHLEWARCPLKTLNICAEKLVSLKMPRSKVQQLWD 527
+P + E A+ L+ + I A+ ++ + P S++ +L D
Sbjct: 201 MPVFTPYIEIPELAQYALEEVAINADPALNWQYPDSELDKLKD 243
>pdb|2A5H|A Chain A, 2.1 Angstrom X-Ray Crystal Structure Of
Lysine-2,3-Aminomutase From Clostridium Subterminale
Sb4, With Michaelis Analog (L-Alpha-Lysine External
Aldimine Form Of Pyridoxal-5'-Phosphate).
pdb|2A5H|B Chain B, 2.1 Angstrom X-Ray Crystal Structure Of
Lysine-2,3-Aminomutase From Clostridium Subterminale
Sb4, With Michaelis Analog (L-Alpha-Lysine External
Aldimine Form Of Pyridoxal-5'-Phosphate).
pdb|2A5H|C Chain C, 2.1 Angstrom X-Ray Crystal Structure Of
Lysine-2,3-Aminomutase From Clostridium Subterminale
Sb4, With Michaelis Analog (L-Alpha-Lysine External
Aldimine Form Of Pyridoxal-5'-Phosphate).
pdb|2A5H|D Chain D, 2.1 Angstrom X-Ray Crystal Structure Of
Lysine-2,3-Aminomutase From Clostridium Subterminale
Sb4, With Michaelis Analog (L-Alpha-Lysine External
Aldimine Form Of Pyridoxal-5'-Phosphate)
Length = 416
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 312 FRGGHLDSSYTELTDKAIKYAQGVPLALKVL--GCYLCGRSKEEWESAMRKLEIIPHVEI 369
F G DS E DKAI Y + P VL G S E E + KL IPHVEI
Sbjct: 137 FAGQSDDSXPXERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEI 196
Query: 370 QEV 372
+
Sbjct: 197 VRI 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,338,417
Number of Sequences: 62578
Number of extensions: 895081
Number of successful extensions: 2064
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2034
Number of HSP's gapped (non-prelim): 24
length of query: 808
length of database: 14,973,337
effective HSP length: 107
effective length of query: 701
effective length of database: 8,277,491
effective search space: 5802521191
effective search space used: 5802521191
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)