Query 041551
Match_columns 808
No_of_seqs 875 out of 4879
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:19:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 6E-108 1E-112 1007.3 70.2 676 13-692 1-845 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1.2E-55 2.5E-60 515.5 28.1 429 167-613 179-652 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-36 2.7E-41 322.3 13.0 247 165-415 17-284 (287)
4 PLN03194 putative disease resi 100.0 4.5E-35 9.7E-40 271.1 11.4 137 15-165 17-155 (187)
5 PLN00113 leucine-rich repeat r 99.8 9.8E-20 2.1E-24 225.5 14.7 245 489-736 117-393 (968)
6 PLN00113 leucine-rich repeat r 99.8 1.7E-19 3.7E-24 223.4 13.9 245 489-736 163-417 (968)
7 KOG4194 Membrane glycoprotein 99.8 6.7E-20 1.5E-24 193.7 3.0 253 482-738 165-431 (873)
8 KOG0444 Cytoskeletal regulator 99.7 1.1E-19 2.3E-24 193.1 -2.2 192 489-682 102-301 (1255)
9 PLN03210 Resistant to P. syrin 99.7 1.3E-16 2.8E-21 198.1 16.7 132 557-689 779-910 (1153)
10 KOG0444 Cytoskeletal regulator 99.7 2.1E-18 4.6E-23 183.2 -0.9 246 482-739 23-284 (1255)
11 PF01582 TIR: TIR domain; Int 99.7 1.2E-17 2.6E-22 156.0 3.9 128 27-154 1-139 (141)
12 smart00255 TIR Toll - interleu 99.7 2.3E-16 4.9E-21 147.7 10.3 134 24-158 1-138 (140)
13 KOG4194 Membrane glycoprotein 99.7 2.5E-17 5.4E-22 174.5 2.9 56 627-682 271-327 (873)
14 PRK15387 E3 ubiquitin-protein 99.6 6.2E-15 1.3E-19 170.2 13.5 220 489-738 241-460 (788)
15 KOG0617 Ras suppressor protein 99.6 4.8E-17 1E-21 146.7 -4.1 159 506-690 29-190 (264)
16 PRK15370 E3 ubiquitin-protein 99.6 5.5E-15 1.2E-19 171.8 9.5 226 489-736 198-428 (754)
17 KOG0472 Leucine-rich repeat pr 99.6 2.8E-17 6.1E-22 167.0 -8.3 217 489-713 67-311 (565)
18 KOG0472 Leucine-rich repeat pr 99.6 3.4E-17 7.3E-22 166.4 -8.0 196 483-683 106-308 (565)
19 KOG0617 Ras suppressor protein 99.5 2.3E-16 5E-21 142.3 -4.2 159 528-713 28-187 (264)
20 PRK15370 E3 ubiquitin-protein 99.5 3.5E-14 7.6E-19 165.1 12.5 225 490-739 178-404 (754)
21 PRK15387 E3 ubiquitin-protein 99.5 1.2E-13 2.6E-18 159.6 13.5 219 489-740 221-439 (788)
22 KOG0618 Serine/threonine phosp 99.4 5.4E-15 1.2E-19 165.3 -2.6 236 489-735 218-488 (1081)
23 PRK04841 transcriptional regul 99.4 1.5E-11 3.2E-16 151.9 24.3 270 167-452 32-335 (903)
24 KOG0618 Serine/threonine phosp 99.4 8.9E-14 1.9E-18 155.7 0.8 189 489-682 240-462 (1081)
25 PF13676 TIR_2: TIR domain; PD 99.3 3.4E-13 7.4E-18 118.4 2.9 87 27-119 1-87 (102)
26 KOG4237 Extracellular matrix p 99.3 1.2E-13 2.6E-18 140.8 -3.1 243 489-736 66-359 (498)
27 KOG0532 Leucine-rich repeat (L 99.2 2E-12 4.4E-17 137.7 -3.2 187 490-682 75-270 (722)
28 KOG0532 Leucine-rich repeat (L 99.1 3.7E-12 8.1E-17 135.7 -2.3 172 508-687 73-248 (722)
29 cd00116 LRR_RI Leucine-rich re 99.1 5.3E-12 1.2E-16 136.0 -2.1 101 491-591 24-148 (319)
30 PF05729 NACHT: NACHT domain 99.1 1.3E-09 2.9E-14 104.9 13.7 142 168-311 1-163 (166)
31 KOG4237 Extracellular matrix p 99.1 7.9E-12 1.7E-16 127.7 -2.7 194 489-683 90-357 (498)
32 COG2909 MalT ATP-dependent tra 99.0 1.2E-08 2.5E-13 115.2 20.5 268 167-453 37-342 (894)
33 cd00116 LRR_RI Leucine-rich re 99.0 5.5E-11 1.2E-15 128.1 1.0 233 506-738 19-293 (319)
34 COG4886 Leucine-rich repeat (L 99.0 5.1E-10 1.1E-14 124.3 6.3 191 494-689 97-294 (394)
35 COG3903 Predicted ATPase [Gene 99.0 7.6E-10 1.6E-14 115.5 6.5 281 167-452 14-317 (414)
36 TIGR03015 pepcterm_ATPase puta 98.9 7.6E-08 1.7E-12 100.8 20.2 174 167-346 43-242 (269)
37 TIGR00635 ruvB Holliday juncti 98.9 2.9E-08 6.2E-13 106.0 16.0 244 167-433 30-292 (305)
38 KOG1259 Nischarin, modulator o 98.9 2.3E-10 5E-15 112.8 -0.2 193 489-690 213-416 (490)
39 KOG3207 Beta-tubulin folding c 98.8 6.5E-10 1.4E-14 115.5 0.9 101 490-590 121-232 (505)
40 PRK00411 cdc6 cell division co 98.8 4.4E-07 9.6E-12 100.7 23.2 252 167-430 55-358 (394)
41 PRK00080 ruvB Holliday junctio 98.8 5.3E-08 1.2E-12 104.7 14.9 233 167-432 51-312 (328)
42 COG4886 Leucine-rich repeat (L 98.8 4.3E-09 9.4E-14 116.9 5.6 176 489-668 115-297 (394)
43 PF01637 Arch_ATPase: Archaeal 98.7 6.4E-08 1.4E-12 98.9 11.3 172 167-341 20-233 (234)
44 PRK06893 DNA replication initi 98.7 1.9E-07 4.1E-12 94.7 13.6 151 167-343 39-204 (229)
45 PF14580 LRR_9: Leucine-rich r 98.7 1.5E-08 3.3E-13 96.6 3.7 100 510-613 19-123 (175)
46 PF14580 LRR_9: Leucine-rich r 98.6 2.2E-08 4.7E-13 95.6 4.2 135 520-682 7-150 (175)
47 KOG3207 Beta-tubulin folding c 98.6 5.7E-09 1.2E-13 108.6 0.0 172 489-661 145-339 (505)
48 KOG1259 Nischarin, modulator o 98.6 6.5E-09 1.4E-13 102.7 -1.2 127 510-661 284-412 (490)
49 PLN03150 hypothetical protein; 98.6 1.3E-07 2.7E-12 110.3 8.8 106 511-616 419-528 (623)
50 COG2256 MGS1 ATPase related to 98.6 4.7E-07 1E-11 94.3 11.6 146 167-336 48-206 (436)
51 TIGR02928 orc1/cdc6 family rep 98.5 8.8E-06 1.9E-10 89.3 21.8 217 167-394 40-300 (365)
52 PLN03150 hypothetical protein; 98.5 1.8E-07 4E-12 108.9 8.7 113 558-692 420-535 (623)
53 PF13173 AAA_14: AAA domain 98.5 8.3E-07 1.8E-11 81.3 11.2 118 168-302 3-126 (128)
54 TIGR03420 DnaA_homol_Hda DnaA 98.5 1E-06 2.2E-11 89.6 12.5 152 167-344 38-203 (226)
55 KOG4658 Apoptotic ATPase [Sign 98.5 1.4E-07 3E-12 112.3 6.3 172 487-661 542-730 (889)
56 PRK15386 type III secretion pr 98.5 5.3E-07 1.1E-11 96.4 9.1 29 491-519 53-81 (426)
57 COG3899 Predicted ATPase [Gene 98.4 4.6E-06 1E-10 99.8 17.7 206 242-450 153-387 (849)
58 PRK15386 type III secretion pr 98.4 5.9E-07 1.3E-11 96.0 7.8 135 529-682 48-187 (426)
59 PRK13342 recombination factor 98.4 3.4E-05 7.3E-10 85.7 21.1 153 167-343 36-197 (413)
60 KOG0531 Protein phosphatase 1, 98.3 8.2E-08 1.8E-12 106.9 -1.2 168 489-660 94-267 (414)
61 KOG0531 Protein phosphatase 1, 98.3 1.3E-07 2.9E-12 105.2 0.5 187 491-683 73-266 (414)
62 PRK09087 hypothetical protein; 98.3 9.2E-06 2E-10 81.9 13.7 138 167-341 44-194 (226)
63 PRK08727 hypothetical protein; 98.3 9E-06 1.9E-10 82.7 13.7 145 168-338 42-200 (233)
64 KOG2120 SCF ubiquitin ligase, 98.3 1.1E-08 2.3E-13 101.3 -8.0 105 510-614 185-297 (419)
65 PF13401 AAA_22: AAA domain; P 98.3 7.2E-06 1.6E-10 75.4 10.7 108 167-280 4-125 (131)
66 PRK07003 DNA polymerase III su 98.3 0.00012 2.7E-09 83.7 22.3 98 242-341 118-220 (830)
67 PF00308 Bac_DnaA: Bacterial d 98.3 3.4E-05 7.3E-10 77.5 16.3 157 167-340 34-206 (219)
68 PRK08084 DNA replication initi 98.2 1.1E-05 2.4E-10 82.2 12.5 148 168-341 46-208 (235)
69 KOG2120 SCF ubiquitin ligase, 98.2 3.8E-08 8.2E-13 97.6 -5.3 171 490-682 185-373 (419)
70 PRK14961 DNA polymerase III su 98.2 8.1E-05 1.8E-09 81.1 19.0 166 167-339 38-217 (363)
71 PRK05642 DNA replication initi 98.2 2.4E-05 5.2E-10 79.6 13.8 149 168-342 46-208 (234)
72 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.6E-11 68.5 3.1 56 511-566 2-59 (61)
73 PRK14949 DNA polymerase III su 98.2 0.00021 4.5E-09 83.5 22.4 97 241-339 117-217 (944)
74 PLN03025 replication factor C 98.2 0.00013 2.9E-09 78.1 19.6 154 168-336 35-194 (319)
75 TIGR00678 holB DNA polymerase 98.2 3.6E-05 7.7E-10 75.7 13.9 143 167-337 14-186 (188)
76 PTZ00112 origin recognition co 98.2 7.5E-05 1.6E-09 85.8 17.7 215 167-393 781-1031(1164)
77 PF13855 LRR_8: Leucine rich r 98.1 2.2E-06 4.7E-11 67.0 3.9 57 627-683 3-60 (61)
78 PRK14963 DNA polymerase III su 98.1 0.00014 2.9E-09 82.1 19.2 165 167-339 36-214 (504)
79 PRK08903 DnaA regulatory inact 98.1 3.1E-05 6.6E-10 78.8 12.4 150 167-346 42-203 (227)
80 PRK05564 DNA polymerase III su 98.1 0.00011 2.4E-09 78.6 17.1 153 167-340 26-188 (313)
81 PRK14960 DNA polymerase III su 98.1 0.00054 1.2E-08 77.7 22.2 149 167-338 37-215 (702)
82 PRK14962 DNA polymerase III su 98.1 0.00051 1.1E-08 76.8 21.9 101 242-344 116-221 (472)
83 PRK14087 dnaA chromosomal repl 98.1 9E-05 1.9E-09 82.6 15.9 165 168-345 142-322 (450)
84 KOG2028 ATPase related to the 98.0 4.3E-05 9.4E-10 78.2 12.0 124 167-309 162-292 (554)
85 PF05496 RuvB_N: Holliday junc 98.0 3.2E-05 6.9E-10 75.6 10.4 149 167-342 50-221 (233)
86 PRK12402 replication factor C 98.0 0.0003 6.6E-09 76.3 19.3 170 167-340 36-224 (337)
87 TIGR01242 26Sp45 26S proteasom 98.0 4.5E-05 9.8E-10 83.3 12.7 148 167-336 156-328 (364)
88 PRK14088 dnaA chromosomal repl 98.0 7.8E-05 1.7E-09 83.0 14.1 154 169-340 132-303 (440)
89 PRK12323 DNA polymerase III su 98.0 0.00018 3.9E-09 81.2 16.8 97 241-339 122-222 (700)
90 PRK07471 DNA polymerase III su 98.0 0.0005 1.1E-08 74.4 19.6 95 242-342 140-238 (365)
91 cd00009 AAA The AAA+ (ATPases 98.0 5.1E-05 1.1E-09 70.9 10.8 105 167-282 19-131 (151)
92 PRK08691 DNA polymerase III su 98.0 0.00039 8.4E-09 79.6 19.4 96 242-339 118-217 (709)
93 PRK06620 hypothetical protein; 98.0 4.4E-05 9.4E-10 76.3 10.5 133 168-339 45-186 (214)
94 KOG1859 Leucine-rich repeat pr 98.0 3.2E-07 7E-12 101.2 -5.1 165 489-660 108-291 (1096)
95 PRK14957 DNA polymerase III su 98.0 0.00029 6.3E-09 79.6 18.0 157 167-342 38-221 (546)
96 PRK00440 rfc replication facto 98.0 0.00043 9.4E-09 74.4 18.8 159 167-339 38-200 (319)
97 PRK06645 DNA polymerase III su 98.0 0.00059 1.3E-08 76.6 20.1 95 242-338 127-225 (507)
98 KOG1859 Leucine-rich repeat pr 97.9 2.1E-07 4.6E-12 102.5 -7.3 174 506-684 105-291 (1096)
99 PRK12422 chromosomal replicati 97.9 0.00026 5.7E-09 78.7 16.7 151 168-335 142-306 (445)
100 PRK14956 DNA polymerase III su 97.9 0.00066 1.4E-08 74.8 19.3 161 168-338 41-218 (484)
101 PRK04195 replication factor C 97.9 0.00037 8.1E-09 79.0 18.0 152 167-340 39-200 (482)
102 TIGR02397 dnaX_nterm DNA polym 97.9 0.00033 7.1E-09 76.6 16.9 100 242-343 116-219 (355)
103 TIGR00362 DnaA chromosomal rep 97.9 0.00023 5.1E-09 79.0 15.9 156 168-340 137-308 (405)
104 PRK13341 recombination factor 97.9 0.00012 2.7E-09 85.6 13.9 146 167-336 52-211 (725)
105 PRK09376 rho transcription ter 97.9 2.3E-05 4.9E-10 83.1 6.5 87 168-256 170-269 (416)
106 PRK14964 DNA polymerase III su 97.9 0.00088 1.9E-08 74.6 19.2 149 167-338 35-213 (491)
107 PRK14958 DNA polymerase III su 97.9 0.001 2.2E-08 75.2 20.1 150 167-339 38-217 (509)
108 PRK00149 dnaA chromosomal repl 97.9 0.00016 3.4E-09 81.4 13.6 156 168-340 149-320 (450)
109 PRK07940 DNA polymerase III su 97.8 0.00032 6.9E-09 76.5 15.1 147 167-340 36-211 (394)
110 PRK14951 DNA polymerase III su 97.8 0.0028 6E-08 72.8 22.7 96 242-339 123-222 (618)
111 PRK14969 DNA polymerase III su 97.8 0.001 2.2E-08 75.7 19.2 99 242-342 118-221 (527)
112 PF14516 AAA_35: AAA-like doma 97.8 0.0029 6.2E-08 68.0 21.5 175 168-348 32-245 (331)
113 KOG2982 Uncharacterized conser 97.8 5.1E-06 1.1E-10 82.7 0.4 190 492-688 47-265 (418)
114 PRK05707 DNA polymerase III su 97.8 0.00059 1.3E-08 72.7 16.0 152 167-342 22-203 (328)
115 PRK14086 dnaA chromosomal repl 97.8 0.00039 8.5E-09 78.7 14.6 154 169-339 316-485 (617)
116 KOG1909 Ran GTPase-activating 97.8 9.4E-06 2E-10 82.9 1.5 224 489-736 29-311 (382)
117 PRK07994 DNA polymerase III su 97.7 0.00058 1.2E-08 78.5 15.7 97 241-339 117-217 (647)
118 PRK14970 DNA polymerase III su 97.7 0.0022 4.9E-08 70.3 20.0 154 167-337 39-204 (367)
119 TIGR02881 spore_V_K stage V sp 97.7 0.00032 6.9E-09 72.9 12.6 130 167-312 42-192 (261)
120 PRK14955 DNA polymerase III su 97.7 0.0016 3.6E-08 71.8 18.4 96 242-339 126-225 (397)
121 PRK09112 DNA polymerase III su 97.7 0.00051 1.1E-08 73.8 13.7 165 167-342 45-240 (351)
122 KOG1909 Ran GTPase-activating 97.7 5.7E-06 1.2E-10 84.5 -1.4 172 489-683 91-309 (382)
123 PRK14959 DNA polymerase III su 97.7 0.0012 2.6E-08 75.2 16.7 157 167-346 38-225 (624)
124 cd01128 rho_factor Transcripti 97.7 8.6E-05 1.9E-09 75.6 6.9 87 167-255 16-115 (249)
125 PRK08116 hypothetical protein; 97.7 0.00024 5.1E-09 73.7 10.0 102 168-281 115-221 (268)
126 TIGR02880 cbbX_cfxQ probable R 97.6 0.00094 2E-08 70.0 14.6 128 169-311 60-208 (284)
127 PRK08181 transposase; Validate 97.6 0.00015 3.2E-09 74.7 8.3 100 167-281 106-209 (269)
128 KOG3678 SARM protein (with ste 97.6 0.00013 2.8E-09 76.7 7.3 92 22-119 610-710 (832)
129 COG0593 DnaA ATPase involved i 97.6 0.00089 1.9E-08 72.1 13.7 142 155-312 103-258 (408)
130 PRK14953 DNA polymerase III su 97.6 0.011 2.4E-07 66.5 23.1 98 242-341 118-219 (486)
131 PF00004 AAA: ATPase family as 97.6 0.00029 6.3E-09 64.6 8.7 23 170-192 1-23 (132)
132 PRK08451 DNA polymerase III su 97.6 0.0097 2.1E-07 67.1 22.0 97 242-340 116-216 (535)
133 PRK14954 DNA polymerase III su 97.6 0.0037 8E-08 72.0 19.1 94 242-337 126-223 (620)
134 PRK05896 DNA polymerase III su 97.6 0.0017 3.7E-08 73.6 16.0 99 243-343 119-222 (605)
135 COG1373 Predicted ATPase (AAA+ 97.6 0.00081 1.7E-08 73.9 13.1 119 169-307 39-163 (398)
136 PRK03992 proteasome-activating 97.6 0.00067 1.4E-08 74.5 12.4 147 167-335 165-336 (389)
137 PRK09111 DNA polymerase III su 97.5 0.0062 1.3E-07 70.1 20.5 168 167-340 46-231 (598)
138 PRK07764 DNA polymerase III su 97.5 0.006 1.3E-07 72.7 21.0 96 241-338 118-217 (824)
139 CHL00181 cbbX CbbX; Provisiona 97.5 0.0019 4.1E-08 67.7 15.0 130 168-312 60-210 (287)
140 PRK07133 DNA polymerase III su 97.5 0.0082 1.8E-07 69.7 21.1 164 167-341 40-219 (725)
141 TIGR02903 spore_lon_C ATP-depe 97.5 0.00089 1.9E-08 77.8 13.3 111 232-344 281-397 (615)
142 PTZ00454 26S protease regulato 97.5 0.0013 2.9E-08 71.9 13.9 148 167-336 179-351 (398)
143 TIGR00767 rho transcription te 97.5 0.00025 5.4E-09 75.8 7.8 88 167-256 168-268 (415)
144 PRK09183 transposase/IS protei 97.5 0.00027 5.9E-09 72.9 8.0 100 167-281 102-206 (259)
145 PRK14950 DNA polymerase III su 97.5 0.0053 1.2E-07 71.2 19.3 166 167-342 38-221 (585)
146 TIGR03689 pup_AAA proteasome A 97.5 0.00074 1.6E-08 75.5 11.5 133 167-311 216-378 (512)
147 PRK14952 DNA polymerase III su 97.5 0.012 2.5E-07 67.5 21.3 99 242-342 117-220 (584)
148 COG2255 RuvB Holliday junction 97.5 0.0017 3.6E-08 65.1 12.6 235 167-434 52-315 (332)
149 PF12799 LRR_4: Leucine Rich r 97.5 0.00011 2.5E-09 52.6 3.2 34 627-660 3-36 (44)
150 PF12799 LRR_4: Leucine Rich r 97.5 8.6E-05 1.9E-09 53.2 2.6 34 511-544 2-35 (44)
151 KOG4579 Leucine-rich repeat (L 97.4 6.6E-06 1.4E-10 72.7 -4.0 79 603-683 53-134 (177)
152 PRK06526 transposase; Provisio 97.4 0.00024 5.1E-09 72.9 6.6 99 167-281 98-201 (254)
153 smart00382 AAA ATPases associa 97.4 0.00037 8E-09 64.4 7.5 35 168-202 3-37 (148)
154 PTZ00361 26 proteosome regulat 97.4 0.00073 1.6E-08 74.5 10.5 128 167-312 217-368 (438)
155 PRK14971 DNA polymerase III su 97.4 0.015 3.3E-07 67.4 21.7 94 242-337 120-217 (614)
156 PF08937 DUF1863: MTH538 TIR-l 97.4 0.00024 5.2E-09 65.0 5.6 78 25-104 1-97 (130)
157 PF01695 IstB_IS21: IstB-like 97.4 0.00026 5.6E-09 68.5 6.1 72 167-253 47-118 (178)
158 PHA02544 44 clamp loader, smal 97.4 0.0023 4.9E-08 68.7 13.5 122 167-309 43-171 (316)
159 PRK06305 DNA polymerase III su 97.4 0.0066 1.4E-07 67.9 17.2 98 242-341 120-222 (451)
160 KOG0741 AAA+-type ATPase [Post 97.3 0.0036 7.7E-08 67.7 14.0 143 167-332 538-704 (744)
161 PRK14948 DNA polymerase III su 97.3 0.028 6E-07 65.3 22.2 164 168-340 39-220 (620)
162 PRK06921 hypothetical protein; 97.3 0.0006 1.3E-08 70.5 7.5 36 167-202 117-153 (266)
163 PRK07399 DNA polymerase III su 97.3 0.017 3.7E-07 61.3 18.5 169 167-341 26-220 (314)
164 PRK06647 DNA polymerase III su 97.3 0.027 5.9E-07 64.5 21.2 162 167-339 38-217 (563)
165 KOG3665 ZYG-1-like serine/thre 97.3 0.00012 2.6E-09 85.4 2.1 83 506-589 144-229 (699)
166 PRK12377 putative replication 97.2 0.0015 3.3E-08 66.4 9.8 72 167-252 101-172 (248)
167 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0037 8.1E-08 70.1 13.7 151 167-336 259-429 (489)
168 CHL00176 ftsH cell division pr 97.2 0.0048 1E-07 71.6 14.6 147 167-334 216-386 (638)
169 COG1474 CDC6 Cdc6-related prot 97.2 0.0084 1.8E-07 64.9 15.4 248 170-430 45-334 (366)
170 PRK08769 DNA polymerase III su 97.2 0.032 6.9E-07 59.1 19.3 156 167-342 26-208 (319)
171 TIGR01241 FtsH_fam ATP-depende 97.2 0.0046 1E-07 70.5 13.9 148 167-335 88-259 (495)
172 KOG4341 F-box protein containi 97.2 2.7E-05 5.8E-10 81.4 -3.8 80 489-568 163-254 (483)
173 KOG1644 U2-associated snRNP A' 97.2 0.00055 1.2E-08 65.1 5.2 102 508-612 40-149 (233)
174 PRK07952 DNA replication prote 97.1 0.0024 5.2E-08 64.9 9.8 74 168-254 100-173 (244)
175 COG3267 ExeA Type II secretory 97.1 0.023 4.9E-07 56.6 16.1 173 167-344 51-247 (269)
176 KOG0744 AAA+-type ATPase [Post 97.1 0.003 6.5E-08 64.3 10.1 79 167-254 177-261 (423)
177 KOG4579 Leucine-rich repeat (L 97.1 2.9E-05 6.2E-10 68.8 -3.6 106 491-599 28-141 (177)
178 PRK14965 DNA polymerase III su 97.1 0.025 5.5E-07 65.4 19.1 99 242-342 118-221 (576)
179 KOG2982 Uncharacterized conser 97.1 0.00015 3.2E-09 72.6 0.6 187 489-680 70-287 (418)
180 PRK08118 topology modulation p 97.1 0.00074 1.6E-08 64.7 5.3 33 169-201 3-38 (167)
181 KOG1644 U2-associated snRNP A' 97.1 0.0011 2.4E-08 63.0 6.0 55 533-589 42-97 (233)
182 PLN00020 ribulose bisphosphate 97.0 0.011 2.3E-07 62.6 13.6 28 167-194 148-175 (413)
183 PRK06871 DNA polymerase III su 97.0 0.02 4.4E-07 60.7 15.7 160 167-338 24-199 (325)
184 COG1222 RPT1 ATP-dependent 26S 97.0 0.011 2.4E-07 61.4 13.0 153 161-336 180-357 (406)
185 PF13191 AAA_16: AAA ATPase do 97.0 0.0014 3.1E-08 64.0 6.4 29 166-194 23-51 (185)
186 COG1484 DnaC DNA replication p 97.0 0.0021 4.6E-08 65.9 7.7 37 166-202 104-140 (254)
187 PRK06090 DNA polymerase III su 97.0 0.033 7.1E-07 58.9 16.8 148 167-342 25-201 (319)
188 TIGR01243 CDC48 AAA family ATP 96.9 0.0073 1.6E-07 72.4 13.1 148 167-336 487-657 (733)
189 KOG0989 Replication factor C, 96.9 0.015 3.2E-07 59.3 12.9 161 167-342 57-231 (346)
190 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0025 5.4E-08 65.3 7.7 94 167-262 69-183 (274)
191 PRK06835 DNA replication prote 96.9 0.0036 7.7E-08 66.6 9.1 35 168-202 184-218 (329)
192 PRK07993 DNA polymerase III su 96.9 0.017 3.7E-07 61.8 14.2 148 167-339 24-201 (334)
193 PRK08058 DNA polymerase III su 96.9 0.024 5.3E-07 60.8 15.5 123 167-309 28-180 (329)
194 PRK05563 DNA polymerase III su 96.8 0.038 8.3E-07 63.6 17.4 161 167-338 38-216 (559)
195 PRK08939 primosomal protein Dn 96.8 0.0034 7.3E-08 66.3 8.1 100 167-281 156-261 (306)
196 PRK10536 hypothetical protein; 96.8 0.0044 9.5E-08 62.5 8.4 108 168-281 75-213 (262)
197 PF04665 Pox_A32: Poxvirus A32 96.8 0.0019 4.2E-08 64.7 5.8 34 169-202 15-48 (241)
198 PRK04132 replication factor C 96.8 0.042 9.1E-07 65.3 17.7 148 175-339 574-728 (846)
199 TIGR02640 gas_vesic_GvpN gas v 96.8 0.017 3.6E-07 59.9 12.9 24 169-192 23-46 (262)
200 PF05673 DUF815: Protein of un 96.8 0.058 1.3E-06 53.9 15.7 96 167-286 52-156 (249)
201 PF08357 SEFIR: SEFIR domain; 96.8 0.0014 3E-08 61.8 4.2 64 26-89 2-70 (150)
202 cd01131 PilT Pilus retraction 96.8 0.0045 9.8E-08 61.2 7.9 108 169-284 3-112 (198)
203 TIGR01243 CDC48 AAA family ATP 96.8 0.0098 2.1E-07 71.3 12.2 149 167-336 212-381 (733)
204 KOG0735 AAA+-type ATPase [Post 96.7 0.021 4.5E-07 64.3 13.4 160 167-342 431-616 (952)
205 cd01120 RecA-like_NTPases RecA 96.7 0.0081 1.8E-07 57.1 9.5 34 169-202 1-34 (165)
206 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0098 2.1E-07 55.8 9.4 112 169-282 4-139 (159)
207 PRK06964 DNA polymerase III su 96.7 0.11 2.3E-06 55.6 18.5 89 242-340 131-223 (342)
208 PF13207 AAA_17: AAA domain; P 96.7 0.0015 3.2E-08 59.0 3.6 23 169-191 1-23 (121)
209 PF00448 SRP54: SRP54-type pro 96.7 0.011 2.4E-07 58.1 10.1 36 167-202 1-36 (196)
210 KOG4341 F-box protein containi 96.7 0.00027 5.9E-09 74.1 -1.6 198 489-686 215-440 (483)
211 TIGR02639 ClpA ATP-dependent C 96.7 0.022 4.8E-07 68.1 14.2 130 168-311 204-358 (731)
212 PF02562 PhoH: PhoH-like prote 96.6 0.0088 1.9E-07 58.7 8.7 109 167-281 19-156 (205)
213 COG5238 RNA1 Ran GTPase-activa 96.5 0.0012 2.6E-08 65.5 1.8 183 489-683 29-253 (388)
214 PRK10733 hflB ATP-dependent me 96.5 0.022 4.8E-07 66.9 12.7 127 168-312 186-336 (644)
215 PF07728 AAA_5: AAA domain (dy 96.5 0.0037 8.1E-08 57.9 5.0 84 170-265 2-89 (139)
216 KOG2123 Uncharacterized conser 96.5 0.00027 5.8E-09 70.1 -2.8 95 490-586 19-123 (388)
217 PRK08699 DNA polymerase III su 96.5 0.03 6.4E-07 59.7 12.4 86 243-338 113-202 (325)
218 KOG0730 AAA+-type ATPase [Post 96.5 0.028 6E-07 63.1 12.3 129 167-313 468-617 (693)
219 PHA00729 NTP-binding motif con 96.5 0.0078 1.7E-07 59.8 7.2 25 168-192 18-42 (226)
220 PF13671 AAA_33: AAA domain; P 96.5 0.012 2.6E-07 54.8 8.2 24 169-192 1-24 (143)
221 COG0542 clpA ATP-binding subun 96.4 0.014 3E-07 67.9 10.2 100 164-268 518-620 (786)
222 TIGR03345 VI_ClpV1 type VI sec 96.4 0.043 9.4E-07 66.3 14.9 154 168-335 209-389 (852)
223 TIGR02639 ClpA ATP-dependent C 96.4 0.027 5.9E-07 67.4 13.0 92 167-266 484-578 (731)
224 PRK04296 thymidine kinase; Pro 96.4 0.0054 1.2E-07 60.2 5.8 111 168-283 3-118 (190)
225 COG1618 Predicted nucleotide k 96.4 0.0036 7.7E-08 57.5 4.0 37 169-205 7-45 (179)
226 PRK12608 transcription termina 96.4 0.011 2.4E-07 63.1 8.3 86 168-255 134-232 (380)
227 PRK11331 5-methylcytosine-spec 96.4 0.0049 1.1E-07 67.3 5.8 86 167-256 194-285 (459)
228 COG1223 Predicted ATPase (AAA+ 96.4 0.018 4E-07 56.9 9.0 148 167-335 151-318 (368)
229 PRK07261 topology modulation p 96.3 0.014 3.1E-07 56.1 8.2 23 169-191 2-24 (171)
230 KOG2739 Leucine-rich acidic nu 96.3 0.0021 4.5E-08 63.9 2.4 61 531-591 63-127 (260)
231 PRK05541 adenylylsulfate kinas 96.3 0.015 3.2E-07 56.5 8.3 36 167-202 7-42 (176)
232 PRK06762 hypothetical protein; 96.3 0.017 3.7E-07 55.3 8.7 25 167-191 2-26 (166)
233 PF05621 TniB: Bacterial TniB 96.3 0.093 2E-06 54.3 14.0 168 167-338 61-257 (302)
234 TIGR02237 recomb_radB DNA repa 96.3 0.012 2.6E-07 58.8 7.7 37 167-203 12-48 (209)
235 TIGR03346 chaperone_ClpB ATP-d 96.3 0.022 4.8E-07 69.2 11.2 95 167-266 595-692 (852)
236 PF13177 DNA_pol3_delta2: DNA 96.2 0.026 5.6E-07 53.8 9.3 114 167-298 19-161 (162)
237 TIGR00602 rad24 checkpoint pro 96.2 0.027 5.9E-07 65.0 11.1 26 167-192 110-135 (637)
238 TIGR01359 UMP_CMP_kin_fam UMP- 96.2 0.034 7.4E-07 54.2 10.4 23 169-191 1-23 (183)
239 PRK09361 radB DNA repair and r 96.2 0.013 2.8E-07 59.4 7.5 37 167-203 23-59 (225)
240 PRK10865 protein disaggregatio 96.2 0.028 6E-07 68.1 11.5 95 167-266 598-695 (857)
241 COG2812 DnaX DNA polymerase II 96.2 0.11 2.3E-06 58.2 14.9 159 170-336 41-214 (515)
242 cd00544 CobU Adenosylcobinamid 96.2 0.014 3E-07 55.9 7.1 120 170-311 2-144 (169)
243 KOG3665 ZYG-1-like serine/thre 96.2 0.0052 1.1E-07 72.0 5.0 101 489-590 147-260 (699)
244 PF01583 APS_kinase: Adenylyls 96.2 0.0069 1.5E-07 56.6 4.8 35 168-202 3-37 (156)
245 TIGR03345 VI_ClpV1 type VI sec 96.1 0.018 3.9E-07 69.6 9.2 96 167-267 596-694 (852)
246 KOG0733 Nuclear AAA ATPase (VC 96.1 0.037 8E-07 61.3 10.6 71 167-254 223-293 (802)
247 COG5238 RNA1 Ran GTPase-activa 96.1 0.0052 1.1E-07 61.1 3.7 150 506-682 88-282 (388)
248 PTZ00202 tuzin; Provisional 96.1 0.024 5.1E-07 61.2 8.7 133 167-310 286-433 (550)
249 KOG2739 Leucine-rich acidic nu 96.0 0.0037 8E-08 62.2 2.3 84 529-614 39-127 (260)
250 KOG0731 AAA+-type ATPase conta 96.0 0.17 3.8E-06 58.6 15.9 152 167-338 344-520 (774)
251 CHL00095 clpC Clp protease ATP 95.9 0.024 5.2E-07 68.7 9.4 96 167-267 539-637 (821)
252 CHL00095 clpC Clp protease ATP 95.9 0.085 1.8E-06 64.0 14.0 128 168-310 201-353 (821)
253 PRK10865 protein disaggregatio 95.9 0.1 2.3E-06 63.3 14.6 129 169-311 201-354 (857)
254 cd01394 radB RadB. The archaea 95.9 0.023 4.9E-07 57.3 7.7 36 167-202 19-54 (218)
255 KOG2543 Origin recognition com 95.9 0.017 3.7E-07 60.5 6.5 147 154-310 15-192 (438)
256 COG0470 HolB ATPase involved i 95.9 0.043 9.3E-07 59.0 10.2 115 169-298 26-168 (325)
257 KOG0729 26S proteasome regulat 95.9 0.06 1.3E-06 53.4 9.8 104 161-283 206-328 (435)
258 COG0464 SpoVK ATPases of the A 95.8 0.053 1.2E-06 62.0 11.2 128 167-312 276-424 (494)
259 TIGR03574 selen_PSTK L-seryl-t 95.8 0.039 8.4E-07 56.9 9.1 26 169-194 1-26 (249)
260 PRK05800 cobU adenosylcobinami 95.8 0.011 2.4E-07 56.7 4.5 23 169-191 3-25 (170)
261 KOG0743 AAA+-type ATPase [Post 95.8 0.072 1.6E-06 57.5 10.9 150 167-346 235-413 (457)
262 COG4088 Predicted nucleotide k 95.7 0.015 3.3E-07 55.6 5.0 28 168-195 2-29 (261)
263 PF13238 AAA_18: AAA domain; P 95.7 0.0085 1.8E-07 54.5 3.4 22 170-191 1-22 (129)
264 TIGR03346 chaperone_ClpB ATP-d 95.7 0.13 2.7E-06 62.8 14.3 129 168-311 195-349 (852)
265 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.051 1.1E-06 50.6 8.7 112 167-295 26-140 (144)
266 PF00485 PRK: Phosphoribulokin 95.7 0.0094 2E-07 58.8 3.8 26 169-194 1-26 (194)
267 PF08433 KTI12: Chromatin asso 95.7 0.021 4.5E-07 59.1 6.3 35 168-202 2-36 (270)
268 KOG1969 DNA replication checkp 95.6 0.031 6.8E-07 63.2 7.8 72 167-255 326-399 (877)
269 PRK11034 clpA ATP-dependent Cl 95.6 0.068 1.5E-06 63.4 11.0 129 169-311 209-362 (758)
270 PF07726 AAA_3: ATPase family 95.6 0.0073 1.6E-07 53.9 2.2 31 170-200 2-32 (131)
271 cd01123 Rad51_DMC1_radA Rad51_ 95.6 0.048 1E-06 55.6 8.6 37 167-203 19-61 (235)
272 PRK11889 flhF flagellar biosyn 95.6 0.054 1.2E-06 58.1 8.9 36 167-202 241-276 (436)
273 COG2607 Predicted ATPase (AAA+ 95.6 0.11 2.4E-06 51.2 10.2 76 167-266 85-165 (287)
274 KOG2123 Uncharacterized conser 95.5 0.00082 1.8E-08 66.8 -4.4 52 627-678 65-123 (388)
275 cd02027 APSK Adenosine 5'-phos 95.5 0.13 2.8E-06 48.2 10.5 24 169-192 1-24 (149)
276 PF00406 ADK: Adenylate kinase 95.5 0.066 1.4E-06 50.4 8.6 20 172-191 1-20 (151)
277 PF13604 AAA_30: AAA domain; P 95.5 0.038 8.2E-07 54.5 7.0 102 167-281 18-131 (196)
278 KOG0727 26S proteasome regulat 95.4 0.077 1.7E-06 52.2 8.7 35 160-195 183-217 (408)
279 TIGR00708 cobA cob(I)alamin ad 95.4 0.096 2.1E-06 49.8 9.2 114 168-282 6-141 (173)
280 TIGR01420 pilT_fam pilus retra 95.4 0.041 8.9E-07 59.4 7.8 109 167-283 122-232 (343)
281 TIGR00763 lon ATP-dependent pr 95.4 0.061 1.3E-06 64.8 9.9 29 167-195 347-375 (775)
282 COG1066 Sms Predicted ATP-depe 95.4 0.072 1.6E-06 56.7 8.9 78 167-253 93-178 (456)
283 PTZ00301 uridine kinase; Provi 95.3 0.014 3.1E-07 57.9 3.6 29 167-195 3-31 (210)
284 cd03214 ABC_Iron-Siderophores_ 95.3 0.083 1.8E-06 51.4 8.9 119 167-286 25-163 (180)
285 KOG0733 Nuclear AAA ATPase (VC 95.3 0.14 3E-06 57.1 11.1 127 168-312 546-693 (802)
286 KOG0739 AAA+-type ATPase [Post 95.3 0.23 5.1E-06 50.3 11.8 154 161-336 160-335 (439)
287 cd02019 NK Nucleoside/nucleoti 95.3 0.014 3.1E-07 46.5 2.8 23 169-191 1-23 (69)
288 PRK04040 adenylate kinase; Pro 95.3 0.021 4.5E-07 55.9 4.5 25 168-192 3-27 (188)
289 COG2019 AdkA Archaeal adenylat 95.3 0.015 3.3E-07 53.7 3.2 25 167-191 4-28 (189)
290 cd01393 recA_like RecA is a b 95.3 0.071 1.5E-06 54.0 8.6 38 166-203 18-61 (226)
291 PRK14722 flhF flagellar biosyn 95.3 0.072 1.6E-06 57.5 8.9 36 167-202 137-174 (374)
292 PRK06067 flagellar accessory p 95.3 0.096 2.1E-06 53.4 9.6 38 166-203 24-61 (234)
293 cd01121 Sms Sms (bacterial rad 95.3 0.069 1.5E-06 58.0 8.9 36 167-202 82-117 (372)
294 PRK03839 putative kinase; Prov 95.3 0.014 3.1E-07 56.8 3.3 24 169-192 2-25 (180)
295 PF00910 RNA_helicase: RNA hel 95.2 0.012 2.6E-07 51.7 2.5 26 170-195 1-26 (107)
296 cd03247 ABCC_cytochrome_bd The 95.2 0.12 2.6E-06 50.2 9.4 124 167-295 28-169 (178)
297 PRK08233 hypothetical protein; 95.1 0.016 3.5E-07 56.4 3.2 26 167-192 3-28 (182)
298 PRK11034 clpA ATP-dependent Cl 95.1 0.069 1.5E-06 63.4 8.9 92 167-266 488-582 (758)
299 PRK12724 flagellar biosynthesi 95.1 0.18 4E-06 54.9 11.3 25 167-191 223-247 (432)
300 PRK07132 DNA polymerase III su 95.1 1.6 3.5E-05 45.9 18.1 148 167-342 18-185 (299)
301 cd03238 ABC_UvrA The excision 95.1 0.1 2.3E-06 50.3 8.6 23 167-189 21-43 (176)
302 PRK10787 DNA-binding ATP-depen 95.1 0.11 2.4E-06 62.1 10.6 136 167-311 349-506 (784)
303 PF14532 Sigma54_activ_2: Sigm 95.1 0.043 9.4E-07 50.7 5.7 100 148-281 8-110 (138)
304 PRK00625 shikimate kinase; Pro 95.0 0.018 3.8E-07 55.4 3.1 24 169-192 2-25 (173)
305 cd03216 ABC_Carb_Monos_I This 95.0 0.088 1.9E-06 50.2 7.9 125 167-295 26-155 (163)
306 cd01122 GP4d_helicase GP4d_hel 95.0 0.2 4.3E-06 52.3 11.3 36 167-202 30-66 (271)
307 TIGR01650 PD_CobS cobaltochela 95.0 0.19 4.1E-06 53.0 10.9 29 168-196 65-93 (327)
308 PRK05703 flhF flagellar biosyn 95.0 0.23 5.1E-06 55.1 12.3 36 167-202 221-258 (424)
309 cd01129 PulE-GspE PulE/GspE Th 95.0 0.06 1.3E-06 55.7 7.2 105 168-282 81-185 (264)
310 PRK05986 cob(I)alamin adenolsy 95.0 0.1 2.2E-06 50.4 8.2 115 167-282 22-159 (191)
311 PF07693 KAP_NTPase: KAP famil 95.0 0.9 2E-05 48.7 16.6 29 166-194 19-47 (325)
312 PF00006 ATP-synt_ab: ATP synt 94.9 0.05 1.1E-06 54.1 6.1 83 168-255 16-117 (215)
313 PRK14974 cell division protein 94.9 0.093 2E-06 56.0 8.5 28 167-194 140-167 (336)
314 PTZ00088 adenylate kinase 1; P 94.9 0.099 2.1E-06 52.7 8.3 22 170-191 9-30 (229)
315 PRK12723 flagellar biosynthesi 94.9 0.084 1.8E-06 57.5 8.3 26 167-192 174-199 (388)
316 PRK08356 hypothetical protein; 94.9 0.25 5.5E-06 48.6 11.1 21 168-188 6-26 (195)
317 cd01125 repA Hexameric Replica 94.9 0.33 7.2E-06 49.6 12.4 24 169-192 3-26 (239)
318 COG0572 Udk Uridine kinase [Nu 94.9 0.029 6.3E-07 55.1 4.1 28 167-194 8-35 (218)
319 KOG2227 Pre-initiation complex 94.9 0.35 7.5E-06 52.4 12.4 144 167-311 175-338 (529)
320 cd03228 ABCC_MRP_Like The MRP 94.9 0.14 3.1E-06 49.2 9.0 123 167-295 28-167 (171)
321 TIGR02858 spore_III_AA stage I 94.8 0.18 3.9E-06 52.2 10.1 112 167-284 111-232 (270)
322 cd03115 SRP The signal recogni 94.8 0.2 4.4E-06 48.2 10.0 34 169-202 2-35 (173)
323 cd03222 ABC_RNaseL_inhibitor T 94.8 0.14 3E-06 49.5 8.6 115 167-296 25-146 (177)
324 KOG0991 Replication factor C, 94.8 0.26 5.7E-06 48.2 10.2 27 166-192 47-73 (333)
325 PRK07667 uridine kinase; Provi 94.8 0.04 8.7E-07 54.2 5.0 28 167-194 17-44 (193)
326 PRK00279 adk adenylate kinase; 94.8 0.13 2.8E-06 51.7 8.7 23 169-191 2-24 (215)
327 TIGR03499 FlhF flagellar biosy 94.8 0.055 1.2E-06 56.6 6.2 36 167-202 194-231 (282)
328 PRK00131 aroK shikimate kinase 94.7 0.023 5.1E-07 54.8 3.2 26 167-192 4-29 (175)
329 PRK05480 uridine/cytidine kina 94.7 0.026 5.5E-07 56.5 3.5 25 167-191 6-30 (209)
330 PRK13947 shikimate kinase; Pro 94.7 0.023 5E-07 54.7 3.1 25 169-193 3-27 (171)
331 COG0563 Adk Adenylate kinase a 94.7 0.11 2.4E-06 50.1 7.7 22 169-190 2-23 (178)
332 cd03223 ABCD_peroxisomal_ALDP 94.7 0.23 4.9E-06 47.6 9.8 122 167-295 27-160 (166)
333 PRK06696 uridine kinase; Valid 94.7 0.038 8.2E-07 55.9 4.6 28 167-194 22-49 (223)
334 COG4608 AppF ABC-type oligopep 94.7 0.11 2.3E-06 52.7 7.6 118 167-287 39-176 (268)
335 PRK00889 adenylylsulfate kinas 94.6 0.042 9E-07 53.2 4.6 35 167-201 4-38 (175)
336 cd02028 UMPK_like Uridine mono 94.6 0.038 8.3E-07 53.6 4.3 26 169-194 1-26 (179)
337 PRK14528 adenylate kinase; Pro 94.6 0.16 3.5E-06 49.6 8.7 24 168-191 2-25 (186)
338 TIGR02524 dot_icm_DotB Dot/Icm 94.6 0.054 1.2E-06 58.5 5.8 108 167-279 134-245 (358)
339 TIGR00235 udk uridine kinase. 94.6 0.027 5.9E-07 56.1 3.3 26 167-192 6-31 (207)
340 cd00227 CPT Chloramphenicol (C 94.6 0.029 6.3E-07 54.3 3.4 25 168-192 3-27 (175)
341 COG0529 CysC Adenylylsulfate k 94.5 0.048 1E-06 51.1 4.3 35 167-201 23-57 (197)
342 COG5635 Predicted NTPase (NACH 94.5 0.39 8.5E-06 58.4 13.4 225 169-394 224-482 (824)
343 cd01130 VirB11-like_ATPase Typ 94.5 0.037 8.1E-07 54.1 3.9 93 167-263 25-120 (186)
344 TIGR01360 aden_kin_iso1 adenyl 94.4 0.031 6.8E-07 54.7 3.3 25 167-191 3-27 (188)
345 PF13481 AAA_25: AAA domain; P 94.4 0.17 3.7E-06 49.7 8.6 27 167-193 32-58 (193)
346 cd03230 ABC_DR_subfamily_A Thi 94.4 0.24 5.3E-06 47.7 9.5 121 167-295 26-168 (173)
347 KOG1514 Origin recognition com 94.4 0.6 1.3E-05 53.2 13.3 173 167-343 422-622 (767)
348 COG1428 Deoxynucleoside kinase 94.4 0.032 6.9E-07 54.1 3.1 26 167-192 4-29 (216)
349 KOG0736 Peroxisome assembly fa 94.4 0.52 1.1E-05 54.1 12.9 119 169-305 707-850 (953)
350 KOG0728 26S proteasome regulat 94.4 0.54 1.2E-05 46.5 11.4 124 167-311 181-331 (404)
351 PF10236 DAP3: Mitochondrial r 94.4 1.1 2.5E-05 47.4 15.2 48 292-339 258-306 (309)
352 TIGR02012 tigrfam_recA protein 94.4 0.096 2.1E-06 55.3 6.9 37 167-203 55-91 (321)
353 PRK08099 bifunctional DNA-bind 94.4 0.059 1.3E-06 59.2 5.5 25 167-191 219-243 (399)
354 TIGR01425 SRP54_euk signal rec 94.4 0.28 6.2E-06 53.9 10.7 35 167-201 100-134 (429)
355 PRK00771 signal recognition pa 94.4 0.13 2.9E-06 56.9 8.3 28 167-194 95-122 (437)
356 PRK14531 adenylate kinase; Pro 94.3 0.21 4.5E-06 48.7 8.8 23 169-191 4-26 (183)
357 PRK06547 hypothetical protein; 94.3 0.038 8.2E-07 53.1 3.4 25 167-191 15-39 (172)
358 PF03969 AFG1_ATPase: AFG1-lik 94.3 0.12 2.6E-06 55.8 7.6 103 167-283 62-169 (362)
359 cd03283 ABC_MutS-like MutS-lik 94.3 0.36 7.8E-06 47.7 10.4 23 168-190 26-48 (199)
360 TIGR01351 adk adenylate kinase 94.3 0.14 3E-06 51.2 7.6 22 170-191 2-23 (210)
361 cd03237 ABC_RNaseL_inhibitor_d 94.3 0.27 5.9E-06 50.4 9.8 24 167-190 25-48 (246)
362 PRK11608 pspF phage shock prot 94.2 1.4 3E-05 47.3 15.5 21 169-189 31-51 (326)
363 cd00267 ABC_ATPase ABC (ATP-bi 94.2 0.17 3.6E-06 48.0 7.7 123 168-295 26-153 (157)
364 PRK12726 flagellar biosynthesi 94.2 0.43 9.3E-06 51.2 11.3 36 167-202 206-241 (407)
365 COG2884 FtsE Predicted ATPase 94.2 0.17 3.6E-06 48.2 7.3 54 235-288 147-204 (223)
366 PF10443 RNA12: RNA12 protein; 94.2 10 0.00022 41.4 22.7 108 243-351 148-288 (431)
367 smart00763 AAA_PrkA PrkA AAA d 94.2 0.06 1.3E-06 57.3 5.0 32 162-193 73-104 (361)
368 cd03217 ABC_FeS_Assembly ABC-t 94.2 0.19 4E-06 49.8 8.3 24 167-190 26-49 (200)
369 PF07724 AAA_2: AAA domain (Cd 94.2 0.034 7.4E-07 53.4 2.8 36 167-202 3-39 (171)
370 PRK03846 adenylylsulfate kinas 94.2 0.064 1.4E-06 53.1 4.8 37 166-202 23-59 (198)
371 COG1703 ArgK Putative periplas 94.1 0.089 1.9E-06 53.7 5.7 41 151-194 38-78 (323)
372 cd00983 recA RecA is a bacter 94.1 0.11 2.5E-06 54.8 6.8 37 167-203 55-91 (325)
373 PRK06217 hypothetical protein; 94.1 0.036 7.8E-07 54.1 2.9 23 169-191 3-25 (183)
374 cd03246 ABCC_Protease_Secretio 94.1 0.22 4.7E-06 48.1 8.3 121 167-295 28-168 (173)
375 cd02024 NRK1 Nicotinamide ribo 94.1 0.035 7.7E-07 53.9 2.8 23 169-191 1-23 (187)
376 cd04121 Rab40 Rab40 subfamily. 94.1 0.28 6.1E-06 48.0 9.2 21 169-189 8-28 (189)
377 PF03205 MobB: Molybdopterin g 94.1 0.07 1.5E-06 49.3 4.6 35 168-202 1-36 (140)
378 PRK05973 replicative DNA helic 94.1 0.13 2.8E-06 51.9 6.9 58 145-202 36-99 (237)
379 COG0488 Uup ATPase components 94.1 0.25 5.5E-06 56.1 9.9 55 240-297 454-511 (530)
380 PRK13949 shikimate kinase; Pro 94.1 0.039 8.4E-07 53.0 3.0 24 169-192 3-26 (169)
381 PF03308 ArgK: ArgK protein; 94.1 0.21 4.5E-06 50.4 8.2 40 152-194 17-56 (266)
382 cd02020 CMPK Cytidine monophos 94.1 0.038 8.3E-07 51.5 2.9 23 169-191 1-23 (147)
383 TIGR00416 sms DNA repair prote 94.1 0.17 3.8E-06 56.6 8.5 36 167-202 94-129 (454)
384 COG1875 NYN ribonuclease and A 94.0 0.24 5.3E-06 51.9 8.7 113 166-281 244-388 (436)
385 cd00464 SK Shikimate kinase (S 94.0 0.042 9.1E-07 51.8 3.1 22 170-191 2-23 (154)
386 COG1419 FlhF Flagellar GTP-bin 94.0 0.3 6.5E-06 52.5 9.7 36 167-202 203-240 (407)
387 KOG0726 26S proteasome regulat 94.0 0.28 6E-06 49.6 8.7 29 167-195 219-247 (440)
388 cd03232 ABC_PDR_domain2 The pl 94.0 0.37 8E-06 47.3 9.8 23 167-189 33-55 (192)
389 COG1102 Cmk Cytidylate kinase 94.0 0.045 9.7E-07 50.5 2.9 25 169-193 2-26 (179)
390 cd02025 PanK Pantothenate kina 94.0 0.039 8.5E-07 55.4 2.9 24 169-192 1-24 (220)
391 cd02021 GntK Gluconate kinase 93.9 0.04 8.6E-07 51.7 2.7 22 169-190 1-22 (150)
392 TIGR00455 apsK adenylylsulfate 93.9 0.44 9.5E-06 46.4 10.2 26 167-192 18-43 (184)
393 TIGR02782 TrbB_P P-type conjug 93.9 0.077 1.7E-06 56.0 5.0 88 168-262 133-223 (299)
394 PF00560 LRR_1: Leucine Rich R 93.9 0.028 6.1E-07 33.4 1.0 20 627-646 2-21 (22)
395 cd02023 UMPK Uridine monophosp 93.9 0.04 8.6E-07 54.6 2.7 23 169-191 1-23 (198)
396 cd01428 ADK Adenylate kinase ( 93.8 0.43 9.2E-06 46.9 10.1 22 170-191 2-23 (194)
397 CHL00206 ycf2 Ycf2; Provisiona 93.8 0.49 1.1E-05 60.1 12.2 25 167-191 1630-1654(2281)
398 COG0396 sufC Cysteine desulfur 93.8 0.41 8.8E-06 47.2 9.3 57 235-293 154-216 (251)
399 PRK13539 cytochrome c biogenes 93.8 0.33 7.3E-06 48.3 9.4 24 167-190 28-51 (207)
400 cd03244 ABCC_MRP_domain2 Domai 93.8 0.55 1.2E-05 47.3 11.0 23 167-189 30-52 (221)
401 TIGR00959 ffh signal recogniti 93.8 0.22 4.9E-06 54.9 8.6 26 167-192 99-124 (428)
402 PRK12727 flagellar biosynthesi 93.8 0.077 1.7E-06 59.3 5.0 28 167-194 350-377 (559)
403 cd00071 GMPK Guanosine monopho 93.8 0.042 9E-07 50.7 2.5 26 169-194 1-26 (137)
404 PF03796 DnaB_C: DnaB-like hel 93.8 0.39 8.4E-06 49.7 10.1 106 167-279 19-138 (259)
405 cd03240 ABC_Rad50 The catalyti 93.8 0.55 1.2E-05 46.6 10.7 59 236-296 132-196 (204)
406 TIGR02322 phosphon_PhnN phosph 93.8 0.049 1.1E-06 52.9 3.1 25 168-192 2-26 (179)
407 PRK09280 F0F1 ATP synthase sub 93.8 0.17 3.8E-06 55.9 7.6 87 167-255 144-250 (463)
408 PRK13946 shikimate kinase; Pro 93.8 0.049 1.1E-06 53.2 3.1 26 167-192 10-35 (184)
409 PRK14529 adenylate kinase; Pro 93.8 0.32 7E-06 48.7 8.9 90 170-261 3-95 (223)
410 PRK09354 recA recombinase A; P 93.7 0.097 2.1E-06 55.8 5.5 37 167-203 60-96 (349)
411 KOG0651 26S proteasome regulat 93.7 0.26 5.7E-06 50.4 8.1 29 167-195 166-194 (388)
412 PF03215 Rad17: Rad17 cell cyc 93.7 0.58 1.3E-05 53.1 12.0 50 145-202 29-78 (519)
413 PRK11823 DNA repair protein Ra 93.7 0.23 5E-06 55.6 8.7 36 167-202 80-115 (446)
414 TIGR02525 plasmid_TraJ plasmid 93.7 0.15 3.2E-06 55.3 6.8 109 168-281 150-260 (372)
415 TIGR02788 VirB11 P-type DNA tr 93.7 0.069 1.5E-06 56.8 4.3 109 167-282 144-254 (308)
416 KOG1970 Checkpoint RAD17-RFC c 93.7 0.25 5.5E-06 54.4 8.5 43 145-191 92-134 (634)
417 KOG1532 GTPase XAB1, interacts 93.7 0.085 1.9E-06 52.7 4.5 36 162-197 14-49 (366)
418 PRK14721 flhF flagellar biosyn 93.7 0.55 1.2E-05 51.7 11.2 25 167-191 191-215 (420)
419 PRK13948 shikimate kinase; Pro 93.6 0.054 1.2E-06 52.5 3.1 26 167-192 10-35 (182)
420 cd00984 DnaB_C DnaB helicase C 93.6 0.53 1.1E-05 48.1 10.6 36 167-202 13-49 (242)
421 PF00625 Guanylate_kin: Guanyl 93.6 0.07 1.5E-06 52.0 3.9 35 167-201 2-36 (183)
422 TIGR01069 mutS2 MutS2 family p 93.6 0.1 2.2E-06 62.3 5.9 111 242-362 401-521 (771)
423 PF13306 LRR_5: Leucine rich r 93.6 0.16 3.4E-06 46.1 6.0 14 552-565 31-44 (129)
424 PF13245 AAA_19: Part of AAA d 93.6 0.12 2.5E-06 42.1 4.5 23 167-189 10-32 (76)
425 PF03266 NTPase_1: NTPase; In 93.6 0.058 1.3E-06 51.6 3.2 24 170-193 2-25 (168)
426 COG0466 Lon ATP-dependent Lon 93.6 0.059 1.3E-06 61.2 3.6 136 167-311 350-508 (782)
427 TIGR02902 spore_lonB ATP-depen 93.6 0.35 7.7E-06 55.5 10.1 23 168-190 87-109 (531)
428 PRK10867 signal recognition pa 93.6 0.25 5.5E-06 54.6 8.5 28 167-194 100-127 (433)
429 PRK12678 transcription termina 93.6 0.13 2.7E-06 57.7 6.1 87 168-256 417-516 (672)
430 cd03281 ABC_MSH5_euk MutS5 hom 93.5 0.48 1E-05 47.3 9.8 23 167-189 29-51 (213)
431 PRK13975 thymidylate kinase; P 93.5 0.064 1.4E-06 52.9 3.5 26 168-193 3-28 (196)
432 cd03278 ABC_SMC_barmotin Barmo 93.5 0.67 1.4E-05 45.7 10.7 21 169-189 24-44 (197)
433 COG1120 FepC ABC-type cobalami 93.5 0.2 4.4E-06 50.9 7.0 23 167-189 28-50 (258)
434 COG0468 RecA RecA/RadA recombi 93.5 0.27 5.8E-06 50.8 7.9 39 165-203 58-96 (279)
435 TIGR01817 nifA Nif-specific re 93.5 1.4 3E-05 50.9 14.9 23 169-191 221-243 (534)
436 PLN02772 guanylate kinase 93.4 0.21 4.5E-06 53.8 7.3 30 167-196 135-164 (398)
437 COG0003 ArsA Predicted ATPase 93.4 0.11 2.5E-06 54.8 5.3 36 167-202 2-37 (322)
438 PRK14526 adenylate kinase; Pro 93.4 0.34 7.5E-06 48.2 8.5 22 170-191 3-24 (211)
439 PRK14530 adenylate kinase; Pro 93.4 0.061 1.3E-06 54.0 3.2 23 169-191 5-27 (215)
440 cd01124 KaiC KaiC is a circadi 93.4 0.09 2E-06 51.3 4.4 33 170-202 2-34 (187)
441 PRK10751 molybdopterin-guanine 93.4 0.073 1.6E-06 50.8 3.5 27 167-193 6-32 (173)
442 COG4618 ArpD ABC-type protease 93.4 0.3 6.6E-06 53.4 8.4 22 168-189 363-384 (580)
443 COG1121 ZnuC ABC-type Mn/Zn tr 93.4 0.18 3.9E-06 51.0 6.4 48 237-286 151-204 (254)
444 smart00534 MUTSac ATPase domai 93.4 0.1 2.2E-06 51.0 4.6 21 169-189 1-21 (185)
445 COG1936 Predicted nucleotide k 93.4 0.06 1.3E-06 50.4 2.7 20 169-188 2-21 (180)
446 PRK12339 2-phosphoglycerate ki 93.4 0.069 1.5E-06 52.5 3.4 25 167-191 3-27 (197)
447 COG0703 AroK Shikimate kinase 93.3 0.067 1.5E-06 50.6 3.0 27 169-195 4-30 (172)
448 KOG0730 AAA+-type ATPase [Post 93.3 0.5 1.1E-05 53.4 10.2 150 167-336 218-386 (693)
449 PF00560 LRR_1: Leucine Rich R 93.3 0.035 7.6E-07 33.0 0.8 21 511-531 1-21 (22)
450 KOG1051 Chaperone HSP104 and r 93.3 0.63 1.4E-05 55.4 11.6 88 166-265 590-684 (898)
451 COG0467 RAD55 RecA-superfamily 93.3 0.1 2.2E-06 54.1 4.8 37 166-202 22-58 (260)
452 cd03282 ABC_MSH4_euk MutS4 hom 93.3 0.21 4.5E-06 49.5 6.7 23 167-189 29-51 (204)
453 PRK05057 aroK shikimate kinase 93.3 0.065 1.4E-06 51.6 3.0 25 168-192 5-29 (172)
454 PRK14493 putative bifunctional 93.3 0.11 2.3E-06 54.0 4.7 34 168-202 2-35 (274)
455 PRK12597 F0F1 ATP synthase sub 93.3 0.23 5E-06 55.1 7.6 86 167-255 143-249 (461)
456 PRK15429 formate hydrogenlyase 93.3 0.43 9.4E-06 56.9 10.5 23 169-191 401-423 (686)
457 cd03243 ABC_MutS_homologs The 93.3 0.13 2.7E-06 51.2 5.1 22 168-189 30-51 (202)
458 PF00437 T2SE: Type II/IV secr 93.2 0.074 1.6E-06 55.5 3.6 105 167-282 127-233 (270)
459 cd01135 V_A-ATPase_B V/A-type 93.2 0.41 8.8E-06 49.2 8.8 91 168-261 70-185 (276)
460 COG3640 CooC CO dehydrogenase 93.2 0.12 2.5E-06 50.9 4.6 34 169-202 2-35 (255)
461 TIGR01039 atpD ATP synthase, F 93.1 0.27 5.8E-06 54.2 7.8 93 167-261 143-256 (461)
462 KOG3928 Mitochondrial ribosome 93.1 1.1 2.3E-05 48.0 11.7 53 291-346 404-460 (461)
463 TIGR03263 guanyl_kin guanylate 93.1 0.063 1.4E-06 52.2 2.7 24 168-191 2-25 (180)
464 cd01857 HSR1_MMR1 HSR1/MMR1. 93.1 0.6 1.3E-05 43.2 9.1 99 69-189 3-105 (141)
465 TIGR01313 therm_gnt_kin carboh 93.1 0.059 1.3E-06 51.4 2.4 22 170-191 1-22 (163)
466 TIGR00041 DTMP_kinase thymidyl 93.1 0.33 7.2E-06 47.7 7.9 26 168-193 4-29 (195)
467 TIGR03575 selen_PSTK_euk L-ser 93.0 0.29 6.3E-06 52.2 7.6 23 170-192 2-24 (340)
468 PF09848 DUF2075: Uncharacteri 93.0 0.25 5.3E-06 53.8 7.3 35 168-202 2-38 (352)
469 PRK04182 cytidylate kinase; Pr 92.9 0.081 1.7E-06 51.3 3.2 24 169-192 2-25 (180)
470 PF13306 LRR_5: Leucine rich r 92.9 0.3 6.5E-06 44.2 6.8 57 552-612 8-67 (129)
471 PRK13768 GTPase; Provisional 92.9 0.13 2.9E-06 52.9 4.9 28 167-194 2-29 (253)
472 PRK03731 aroL shikimate kinase 92.9 0.082 1.8E-06 50.9 3.2 24 169-192 4-27 (171)
473 PRK04301 radA DNA repair and r 92.9 0.36 7.7E-06 51.7 8.3 37 167-203 102-144 (317)
474 KOG2228 Origin recognition com 92.9 0.81 1.7E-05 47.6 10.2 144 167-311 49-219 (408)
475 TIGR00064 ftsY signal recognit 92.9 0.13 2.9E-06 53.4 4.8 36 167-202 72-107 (272)
476 cd01132 F1_ATPase_alpha F1 ATP 92.9 0.21 4.6E-06 51.2 6.1 93 168-264 70-183 (274)
477 cd03287 ABC_MSH3_euk MutS3 hom 92.8 0.55 1.2E-05 47.1 9.0 111 167-286 31-159 (222)
478 TIGR00176 mobB molybdopterin-g 92.8 0.12 2.6E-06 48.7 4.1 26 169-194 1-26 (155)
479 KOG0734 AAA+-type ATPase conta 92.8 0.52 1.1E-05 51.8 9.1 95 167-282 337-450 (752)
480 PRK14527 adenylate kinase; Pro 92.8 0.087 1.9E-06 51.8 3.2 25 167-191 6-30 (191)
481 PRK06002 fliI flagellum-specif 92.8 0.2 4.2E-06 55.3 6.1 24 167-190 165-188 (450)
482 cd01136 ATPase_flagellum-secre 92.8 0.23 5.1E-06 52.6 6.5 26 167-192 69-94 (326)
483 KOG1947 Leucine rich repeat pr 92.8 0.029 6.2E-07 64.0 -0.4 106 509-614 187-306 (482)
484 COG2401 ABC-type ATPase fused 92.8 0.29 6.3E-06 52.1 7.0 24 168-191 410-433 (593)
485 cd01983 Fer4_NifH The Fer4_Nif 92.8 0.13 2.9E-06 43.6 4.0 25 169-193 1-25 (99)
486 TIGR03600 phage_DnaB phage rep 92.7 0.67 1.4E-05 51.8 10.5 52 167-224 194-246 (421)
487 PRK08927 fliI flagellum-specif 92.7 0.23 5E-06 54.7 6.5 26 167-192 158-183 (442)
488 PRK08972 fliI flagellum-specif 92.7 0.17 3.6E-06 55.6 5.4 90 167-261 162-271 (444)
489 PRK06761 hypothetical protein; 92.7 0.13 2.7E-06 53.4 4.3 27 168-194 4-30 (282)
490 TIGR03740 galliderm_ABC gallid 92.7 0.74 1.6E-05 46.4 9.9 24 167-190 26-49 (223)
491 PRK08149 ATP synthase SpaL; Va 92.7 0.24 5.2E-06 54.4 6.6 24 167-190 151-174 (428)
492 PF08423 Rad51: Rad51; InterP 92.7 0.55 1.2E-05 48.4 9.0 36 167-202 38-79 (256)
493 cd03289 ABCC_CFTR2 The CFTR su 92.7 0.83 1.8E-05 47.6 10.4 34 167-202 30-63 (275)
494 KOG3347 Predicted nucleotide k 92.7 0.091 2E-06 47.7 2.7 23 168-190 8-30 (176)
495 PRK14723 flhF flagellar biosyn 92.7 0.74 1.6E-05 54.2 10.9 26 167-192 185-210 (767)
496 TIGR02974 phageshock_pspF psp 92.6 0.49 1.1E-05 50.8 8.9 22 169-190 24-45 (329)
497 KOG0735 AAA+-type ATPase [Post 92.6 1.9 4.1E-05 49.3 13.4 125 169-311 703-848 (952)
498 cd03213 ABCG_EPDR ABCG transpo 92.6 0.66 1.4E-05 45.6 9.2 25 167-191 35-59 (194)
499 PF00158 Sigma54_activat: Sigm 92.6 0.2 4.4E-06 47.9 5.3 21 170-190 25-45 (168)
500 PRK00300 gmk guanylate kinase; 92.6 0.088 1.9E-06 52.4 3.0 25 167-191 5-29 (205)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.4e-108 Score=1007.32 Aligned_cols=676 Identities=41% Similarity=0.687 Sum_probs=587.7
Q ss_pred ecCCCCCCCCCcccEEecCccccCCCChHHHHHHHHHhCCcceEeeCCcCCCCcchHHHHHHHHhhcceeEEecccccch
Q 041551 13 MAPPSSSRNSNKYDVFLSFRGEDTRDNFTSHLYSALWHNNIETFIDNDLKRGDEISQSLLDTIEASAISIIIFSERYASS 92 (808)
Q Consensus 13 ~~~~~~~~~~~~~dvflSy~~~D~~~~f~~~l~~~l~~~g~~~~~d~~l~~g~~~~~~i~~ai~~s~~~v~v~S~~y~~s 92 (808)
||+|||+++.|+||||+||+|+|+|++|++||+++|.++||.+|+|+++++|+.|.+++.+||++||++|||+|++|++|
T Consensus 1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s 80 (1153)
T PLN03210 1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASS 80 (1153)
T ss_pred CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccc
Confidence 56777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhcCCCeEEEEEeeeCCCccccccchhHHHHHhhhccC-ccchhhHhhhhHhhhcccCCccc-----
Q 041551 93 GWCLDELSKIFECKHDYGQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGERY-PEKMQRWGNTLTEAANLSGFDSH----- 166 (808)
Q Consensus 93 ~~c~~el~~~~~~~~~~~~~v~Pv~~~v~p~~vr~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~----- 166 (808)
+||++|+++|++|+++.++.|+||||+|||++||+|+|.|+++|.+++.+. .+++++|++||++++++.|++..
T Consensus 81 ~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~E 160 (1153)
T PLN03210 81 SWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNE 160 (1153)
T ss_pred hHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCCH
Confidence 999999999999999999999999999999999999999999999987763 48899999999999999998653
Q ss_pred ----------------------------------------------eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEE
Q 041551 167 ----------------------------------------------VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYF 200 (808)
Q Consensus 167 ----------------------------------------------~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~ 200 (808)
+++|+||||||+||||||+++|+++..+|++.+|
T Consensus 161 ~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vf 240 (1153)
T PLN03210 161 AKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVF 240 (1153)
T ss_pred HHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEE
Confidence 6899999999999999999999999999999999
Q ss_pred Eecc--hhh---hhc------cCHHHHHHHHHhhHhcCccc--ccHHHHHHHHccceEEEEEecCCCHHHHHHHHhccCC
Q 041551 201 AQNV--REA---EET------GGIKDLQKELLSDVLNDRIL--RDVRSQLNRLARKMVLLVFDDVNNPRQIESLIGHLDH 267 (808)
Q Consensus 201 ~~~~--~~~---~~~------~~~~~l~~~ll~~~~~~~~~--~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~l~~ 267 (808)
+... ... ... .....++++++..+...... .....++++++++|+||||||||+.++|+.+.....|
T Consensus 241 v~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~ 320 (1153)
T PLN03210 241 IDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQW 320 (1153)
T ss_pred eeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCcc
Confidence 8641 110 000 11234566666666544332 2346788899999999999999999999999988888
Q ss_pred CCCCCEEEEEeCchhhhhhcCCCeEEEecCCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhhc
Q 041551 268 LASGSRVIITTRDKQVLKNCWAGQIYQMKELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYLC 347 (808)
Q Consensus 268 ~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~ 347 (808)
+++||+||||||+++++..++...+|+|+.|+.+||++||.++||+...+++.+.+++++|+++|+|+||||+++|++|+
T Consensus 321 ~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~ 400 (1153)
T PLN03210 321 FGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLR 400 (1153)
T ss_pred CCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHc
Confidence 89999999999999999887788999999999999999999999988777778899999999999999999999999999
Q ss_pred CCCHHHHHHHHhhhhcCcchhHHHHHHHhhcCCcH-HHHHHHhhhhhccCCcchhHHHHHHhhcCCcchhhhhhhhcccc
Q 041551 348 GRSKEEWESAMRKLEIIPHVEIQEVLKISYDSLDD-SQKNIFLDIACFLEGEHRDKVISFFDASGLEAKIELSVLEGKSL 426 (808)
Q Consensus 348 ~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~la~fp~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sL 426 (808)
+++..+|+.++++++..++.+|..+|++||+.|++ .+|.||+++|||+.+...+.+..++...++.+..+++.|+++||
T Consensus 401 ~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksL 480 (1153)
T PLN03210 401 GRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSL 480 (1153)
T ss_pred CCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCC
Confidence 99999999999999988888999999999999986 58999999999999999998888888888888889999999999
Q ss_pred eeeecCCeEEecHHHHHHHHHHHhhcCCCCCCCccccccchhhhHHhhhcccccc-------------------------
Q 041551 427 INLDVFDQIRMHDLLRDMGREIVRNESVDYPGKRSRLWHHNDIYEVLKKNTVSNN------------------------- 481 (808)
Q Consensus 427 i~~~~~~~~~mHdlv~~~~~~i~~~e~~~~~~~~~~l~~~~~~~~~l~~~~~~~~------------------------- 481 (808)
|+.. .++++|||++|+||++++++++ ..|++++++|.+.++++++..+.++..
T Consensus 481 i~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~ 558 (1153)
T PLN03210 481 IHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMR 558 (1153)
T ss_pred EEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCc
Confidence 9987 5789999999999999999987 689999999999999999988765430
Q ss_pred --------------------ccCCCCC--CCceeEEEecCCCCCCc--ccCcccceEeecCCCCcccccchhhcccccce
Q 041551 482 --------------------KFSIGVP--FAEVRHLEWARCPLKTL--NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKE 537 (808)
Q Consensus 482 --------------------~~~~~~~--~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~ 537 (808)
.+|.++. +.+||.|+|.+++++.+ .+.+++|+.|+|++|.+..+|.++..+++|+.
T Consensus 559 ~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~ 638 (1153)
T PLN03210 559 NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRN 638 (1153)
T ss_pred cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCE
Confidence 1233444 56799999999999998 56789999999999999999999999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCC
Q 041551 538 IDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLK 617 (808)
Q Consensus 538 L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~ 617 (808)
|+|++|..++.+|+++.+++|+.|+|++|..+..+|..++++++|+.|++++|+.++.+|..+++++|+.|++++|..+.
T Consensus 639 L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~ 718 (1153)
T PLN03210 639 IDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLK 718 (1153)
T ss_pred EECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcc
Confidence 99999988899999999999999999999999999999999999999999999999999998899999999999998877
Q ss_pred cccccccccccEEEecccCCe------------------------------------------------------ecCcc
Q 041551 618 IFPEITSCHMWRLELTKVGIK------------------------------------------------------ELPSS 643 (808)
Q Consensus 618 ~~p~~~~~~L~~L~L~~n~i~------------------------------------------------------~lp~~ 643 (808)
.+|... ..|+.|+|++|.+. ++|.+
T Consensus 719 ~~p~~~-~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s 797 (1153)
T PLN03210 719 SFPDIS-TNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS 797 (1153)
T ss_pred cccccc-CCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh
Confidence 776542 12444444444433 45555
Q ss_pred cccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCC
Q 041551 644 IECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIP 692 (808)
Q Consensus 644 ~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~ 692 (808)
++++++|+.|+|++|..++.+|..+ .+++|+.|++++|..+..+|..+
T Consensus 798 i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~ 845 (1153)
T PLN03210 798 IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS 845 (1153)
T ss_pred hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc
Confidence 6666666666666666666666544 56666666777766666666543
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-55 Score=515.48 Aligned_cols=429 Identities=26% Similarity=0.346 Sum_probs=336.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH---hhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCccc-------ccHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK---ISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRIL-------RDVRSQ 236 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~---~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-------~~~~~l 236 (808)
..+++|+||||+||||||++++|+ +..+|+.++|+. +|+......++++++..+...+.. +....+
T Consensus 179 ~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i 254 (889)
T KOG4658|consen 179 VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKL 254 (889)
T ss_pred CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHH
Confidence 389999999999999999999993 778999999999 577888889999998876553221 455667
Q ss_pred HHHHccceEEEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhhhhh-cCCCeEEEecCCChhhHHHHHHHHhhcCC
Q 041551 237 LNRLARKMVLLVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQVLKN-CWAGQIYQMKELVYTDAQKLFSQYAFRGG 315 (808)
Q Consensus 237 ~~~L~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 315 (808)
.+.|+++|++||+||||+..+|+.+..++|....||+|++|||+..|+.. +++...++++.|+.+|||+||.+.+|...
T Consensus 255 ~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~ 334 (889)
T KOG4658|consen 255 LNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNT 334 (889)
T ss_pred HHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccc
Confidence 78899999999999999999999999999988889999999999999998 77888999999999999999999998764
Q ss_pred C-CCchHHHHHHHHHHHhcCchhhHHHHhhhhcCC-CHHHHHHHHhhhhcC-----c--chhHHHHHHHhhcCCcHHHHH
Q 041551 316 H-LDSSYTELTDKAIKYAQGVPLALKVLGCYLCGR-SKEEWESAMRKLEII-----P--HVEIQEVLKISYDSLDDSQKN 386 (808)
Q Consensus 316 ~-~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~-~~~~w~~~l~~l~~~-----~--~~~i~~~l~~sy~~L~~~~k~ 386 (808)
. ..+..+++|++++++|+|+|||+.++|+.|+.+ +..+|+++.+.+... + .+.+..++++|||.||++.|.
T Consensus 335 ~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~ 414 (889)
T KOG4658|consen 335 LGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKS 414 (889)
T ss_pred ccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHH
Confidence 3 445589999999999999999999999999976 677999999987654 1 356889999999999999999
Q ss_pred HHhhhhhccCCcc--hhHHHHHHhhcCCcch------------hhhhhhhcccceeeecC----CeEEecHHHHHHHHHH
Q 041551 387 IFLDIACFLEGEH--RDKVISFFDASGLEAK------------IELSVLEGKSLINLDVF----DQIRMHDLLRDMGREI 448 (808)
Q Consensus 387 ~fl~la~fp~~~~--~~~l~~~~~~~g~~~~------------~~l~~L~~~sLi~~~~~----~~~~mHdlv~~~~~~i 448 (808)
||+|||+||+++. .+.++..|+++|+... ..+.+|++++|+..... .++.|||+||++|..+
T Consensus 415 CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~i 494 (889)
T KOG4658|consen 415 CFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWI 494 (889)
T ss_pred HHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHH
Confidence 9999999999995 5789999999997532 34899999999987642 5699999999999999
Q ss_pred HhhcCCCCCCCccccccchhhhHHhhhccccccccCCCCCCCceeEEEecCCCCCCc--ccCcccceEeecCCCC--ccc
Q 041551 449 VRNESVDYPGKRSRLWHHNDIYEVLKKNTVSNNKFSIGVPFAEVRHLEWARCPLKTL--NICAEKLVSLKMPRSK--VQQ 524 (808)
Q Consensus 449 ~~~e~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~--l~~ 524 (808)
+.+....... .+... ..+. ...|........|.+.+.++.+..+ .....+|++|-+..|. +..
T Consensus 495 as~~~~~~e~---~iv~~---------~~~~-~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~ 561 (889)
T KOG4658|consen 495 ASDFGKQEEN---QIVSD---------GVGL-SEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE 561 (889)
T ss_pred hccccccccc---eEEEC---------CcCc-cccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh
Confidence 9854332211 00000 0000 0112222245667777777666555 3333367777777775 555
Q ss_pred ccch-hhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-C
Q 041551 525 LWDD-VQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-H 601 (808)
Q Consensus 525 l~~~-~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~ 601 (808)
++.. |..++.|++|||++|.....+|. +++|-+|++|+|+++ .+..+|.++++|++|.+|++..+..+..+|... .
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~ 640 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLE 640 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhh
Confidence 5444 66777888888887777777775 777788888888775 566777778888888888887766666665544 4
Q ss_pred CCCCCEEeccCC
Q 041551 602 SKHLKELSLRGC 613 (808)
Q Consensus 602 l~~L~~L~L~~~ 613 (808)
+++|++|.+..-
T Consensus 641 L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 641 LQSLRVLRLPRS 652 (889)
T ss_pred cccccEEEeecc
Confidence 777777776553
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.2e-36 Score=322.35 Aligned_cols=247 Identities=30% Similarity=0.477 Sum_probs=192.8
Q ss_pred cceeEEEEeecCCCcHhHHHHHHHHH--hhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCc--------ccccHH
Q 041551 165 SHVISIWIWGIGGIGKTTIADAVFNK--ISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDR--------ILRDVR 234 (808)
Q Consensus 165 ~~~~vi~I~G~gGiGKTtLA~~~~~~--~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~--------~~~~~~ 234 (808)
...++|+|+||||+||||||.+++++ +..+|+.++|+.... ......+...++..+.... ..+...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~----~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 92 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK----NPSLEQLLEQILRQLGEPDSSISDPKDIEELQD 92 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-----SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccc----ccccccccccccccccccccccccccccccccc
Confidence 34899999999999999999999997 899999999998543 3334666777766665441 125677
Q ss_pred HHHHHHccceEEEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhhhhhcCC-CeEEEecCCChhhHHHHHHHHhhc
Q 041551 235 SQLNRLARKMVLLVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQVLKNCWA-GQIYQMKELVYTDAQKLFSQYAFR 313 (808)
Q Consensus 235 ~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~ 313 (808)
.+.+.|.++++||||||||+...|+.+...++....||+||||||+..++..+.. ...+++++|+.+||++||.+.++.
T Consensus 93 ~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~ 172 (287)
T PF00931_consen 93 QLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGR 172 (287)
T ss_dssp HHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTS
T ss_pred cchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888999999999999999999999998887777789999999999998876554 678999999999999999999976
Q ss_pred CC-CCCchHHHHHHHHHHHhcCchhhHHHHhhhhcCC-CHHHHHHHHhhhhcCc------chhHHHHHHHhhcCCcHHHH
Q 041551 314 GG-HLDSSYTELTDKAIKYAQGVPLALKVLGCYLCGR-SKEEWESAMRKLEIIP------HVEIQEVLKISYDSLDDSQK 385 (808)
Q Consensus 314 ~~-~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~-~~~~w~~~l~~l~~~~------~~~i~~~l~~sy~~L~~~~k 385 (808)
.. ...+...+.+++|+++|+|+||||+++|++|+.+ +..+|+..++++.... ...+..++..||+.|+++.|
T Consensus 173 ~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~ 252 (287)
T PF00931_consen 173 KESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELR 252 (287)
T ss_dssp HS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHH
Confidence 55 3345556789999999999999999999999532 6678999888765432 46799999999999999999
Q ss_pred HHHhhhhhccCCcc--hhHHHHHHhhcCCcch
Q 041551 386 NIFLDIACFLEGEH--RDKVISFFDASGLEAK 415 (808)
Q Consensus 386 ~~fl~la~fp~~~~--~~~l~~~~~~~g~~~~ 415 (808)
.||++||+||.++. .+.++.+|.++|++..
T Consensus 253 ~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 253 RCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred HHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999975 6889999999998643
No 4
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=4.5e-35 Score=271.11 Aligned_cols=137 Identities=37% Similarity=0.639 Sum_probs=125.7
Q ss_pred CCCCCCCCCcccEEecCccccCCCChHHHHHHHHHhCCcceEeeC-CcCCCCcchHHHHHHHHhhcceeEEecccccchh
Q 041551 15 PPSSSRNSNKYDVFLSFRGEDTRDNFTSHLYSALWHNNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASSG 93 (808)
Q Consensus 15 ~~~~~~~~~~~dvflSy~~~D~~~~f~~~l~~~l~~~g~~~~~d~-~l~~g~~~~~~i~~ai~~s~~~v~v~S~~y~~s~ 93 (808)
.||+++...+|||||||+|+|+|++|++||+++|+++||+||+|+ ++++|+.+.++|.+||++|+++|+|+|++|++|+
T Consensus 17 ~~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~ 96 (187)
T PLN03194 17 YPSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESY 96 (187)
T ss_pred cccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccch
Confidence 466777788999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhcCCCeEEEEEeeeCCCccccc-cchhHHHHHhhhccCccchhhHhhhhHhhhcccCCcc
Q 041551 94 WCLDELSKIFECKHDYGQIVIPVFCRVDPSHVRRQ-TGTFGDYFSKLGERYPEKMQRWGNTLTEAANLSGFDS 165 (808)
Q Consensus 94 ~c~~el~~~~~~~~~~~~~v~Pv~~~v~p~~vr~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 165 (808)
||++||++|+++. ..|+||||+|+|++||+| .+. ...+++++|++||++++++.|++.
T Consensus 97 WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~----------~~~e~v~~Wr~AL~~va~l~G~~~ 155 (187)
T PLN03194 97 FCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT----------CPDEEIRRFNWALEEAKYTVGLTF 155 (187)
T ss_pred hHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC----------CCHHHHHHHHHHHHHHhccccccC
Confidence 9999999999874 479999999999999997 433 234789999999999999999754
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=9.8e-20 Score=225.54 Aligned_cols=245 Identities=17% Similarity=0.162 Sum_probs=122.6
Q ss_pred CCceeEEEecCCCCCCc--ccCcccceEeecCCCCcc-cccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecC
Q 041551 489 FAEVRHLEWARCPLKTL--NICAEKLVSLKMPRSKVQ-QLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLR 564 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~ 564 (808)
+++|++|++++|.+... ...+.+|++|+|++|.+. .+|..++++++|++|+|++|.+.+.+|. ++++++|++|+|+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 34555555555554332 223445555555555554 3444455555555555555544444443 5555555555555
Q ss_pred CCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccccccccc-----------------
Q 041551 565 GCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCH----------------- 626 (808)
Q Consensus 565 ~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~----------------- 626 (808)
+|...+.+|..++++++|++|+|++|.....+|..+ ++++|++|++++|.....+|..+...
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 554444445555555555555555544333444443 44555555555544333344333222
Q ss_pred ---------ccEEEecccCCe-ecCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcC
Q 041551 627 ---------MWRLELTKVGIK-ELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNI 696 (808)
Q Consensus 627 ---------L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~ 696 (808)
|+.|+|++|.+. .+|..+.++++|+.|++++|.+.+.+|..+..+++|+.|++++|.....+|.....
T Consensus 277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-- 354 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-- 354 (968)
T ss_pred chhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC--
Confidence 444555544444 33444445555555555555444444444555555555555554433333322111
Q ss_pred CCCceeeecCCCCCCCCcccccccCCCccccccccccccc
Q 041551 697 DGGFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLG 736 (808)
Q Consensus 697 ~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~ 736 (808)
...+..+.+.+|.+....+..+|.++++..+++.+|.+.
T Consensus 355 -~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 355 -HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred -CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence 112344566667666666677777777777777776654
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=1.7e-19 Score=223.43 Aligned_cols=245 Identities=20% Similarity=0.158 Sum_probs=204.0
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcc-cccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQ-QLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
+++|++|++++|.+... +..+++|++|+|++|.+. .+|..++++++|++|+|++|.+...+|. ++++++|++|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 67888888888876543 456788888999888877 5677888889999999999888777885 88899999999
Q ss_pred cCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccccccccc--ccEEEecccCCe-
Q 041551 563 LRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIK- 638 (808)
Q Consensus 563 L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~- 638 (808)
+++|...+.+|..++++++|+.|++++|.....+|..+ ++++|++|++++|.....+|...... |+.|++++|.+.
T Consensus 243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 99987777888889999999999999887667778776 78999999999997777777765544 999999999997
Q ss_pred ecCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCccccc
Q 041551 639 ELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEV 718 (808)
Q Consensus 639 ~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 718 (808)
.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.....+|.... ....+..+.+.+|.+....|..
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~---~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC---SSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh---CcCCCCEEECcCCEecccCCHH
Confidence 5788899999999999999999889999999999999999999976555554322 2224456788889888888888
Q ss_pred ccCCCccccccccccccc
Q 041551 719 FCGLKHKSQRNLDRRSLG 736 (808)
Q Consensus 719 f~~l~~l~~~~l~~n~~~ 736 (808)
+..++++..+++++|.+.
T Consensus 400 ~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFS 417 (968)
T ss_pred HhCCCCCCEEECcCCEee
Confidence 999999999999998865
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=6.7e-20 Score=193.66 Aligned_cols=253 Identities=19% Similarity=0.194 Sum_probs=160.7
Q ss_pred ccCCCCCCCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCC--CCCC
Q 041551 482 KFSIGVPFAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLP--DLSR 554 (808)
Q Consensus 482 ~~~~~~~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p--~~~~ 554 (808)
..+....-.++++|++.+|.+..+ +..+.+|..|.|+.|+++.+|.. |++|++|+.|+|..|.+ .... .|.+
T Consensus 165 ~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqg 243 (873)
T KOG4194|consen 165 PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQG 243 (873)
T ss_pred cCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce-eeehhhhhcC
Confidence 333333357899999999999988 66778999999999999999876 78899999999999964 3332 3888
Q ss_pred CCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC--CCCCCCEEeccCCCCCCcccccccc--cccEE
Q 041551 555 AKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITSC--HMWRL 630 (808)
Q Consensus 555 l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L 630 (808)
|++|+.|.|..|.....-...|..|.++++|+|..| .+..+.... ++++|+.|+||+|..-..-++.... .|+.|
T Consensus 244 L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 244 LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL 322 (873)
T ss_pred chhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence 999999999888544434445777888888888884 466655433 7788888888887544433333322 27777
Q ss_pred EecccCCeecCcc-cccCCcCcEEEeecCCCccccc-ccccCCCCCCEEEeecCCCCccccCCCCCcCCC-CceeeecCC
Q 041551 631 ELTKVGIKELPSS-IECLSNLQYLYIWDCSELESIS-SSIFKLNSLESIDISNCSNLKRFLEIPSCNIDG-GFAFCIVVP 707 (808)
Q Consensus 631 ~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~-~~~~~l~l~ 707 (808)
+|++|+|+++|++ |..|..|+.|+|+.|.+ ..+- ..|..+++|+.|||++|..-..+.+ ....+.+ .++..+.+.
T Consensus 323 dLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~ls~~IED-aa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 323 DLSSNRITRLDEGSFRVLSQLEELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNELSWCIED-AAVAFNGLPSLRKLRLT 400 (873)
T ss_pred eccccccccCChhHHHHHHHhhhhcccccch-HHHHhhHHHHhhhhhhhcCcCCeEEEEEec-chhhhccchhhhheeec
Confidence 7887777777543 66666666666666655 3332 2345555566666555432211211 1111211 123334455
Q ss_pred CCCCCCcccccccCCCcccccccccccccce
Q 041551 708 HCWEPCETHEVFCGLKHKSQRNLDRRSLGRI 738 (808)
Q Consensus 708 ~~~~~~~~~~~f~~l~~l~~~~l~~n~~~~~ 738 (808)
+|++..+....|..+.+|+.++|.+|.+.++
T Consensus 401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred CceeeecchhhhccCcccceecCCCCcceee
Confidence 5555544444555555555555555554443
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=1.1e-19 Score=193.06 Aligned_cols=192 Identities=21% Similarity=0.251 Sum_probs=90.2
Q ss_pred CCceeEEEecCCCCCCc---ccCcccceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCCCCCCCCCCcEEecC
Q 041551 489 FAEVRHLEWARCPLKTL---NICAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLR 564 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~ 564 (808)
+..|..|+++.|.++.. ....+++-+|+|++|+|..+|.. +-+|+.|-+||||+|.+-...|.+..|.+|++|.|+
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcC
Confidence 55555556665555555 22334555555555555555544 445555555555555433333335555555555555
Q ss_pred CCCCCccccccccCCCCcCEEecCCCCC-CCcCCCcC-CCCCCCEEeccCCCCCCccccccccc--ccEEEecccCCeec
Q 041551 565 GCLSLVETHSTIQYLNKLEDLDLDYCIS-LTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIKEL 640 (808)
Q Consensus 565 ~n~~l~~~p~~~~~l~~L~~L~l~~~~~-l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~~l 640 (808)
+|...-.--..+..+++|++|.+++.+. +..+|.++ .+.+|..+++|.| .+..+|+..... |+.|+||+|.|+++
T Consensus 182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeee
Confidence 5532211111222334444444444221 22344444 4444555555444 333344333322 44455555555544
Q ss_pred CcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecC
Q 041551 641 PSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNC 682 (808)
Q Consensus 641 p~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c 682 (808)
....+...+|++|+||.|++ +.+|+.+++|+.|+.|.+.+|
T Consensus 261 ~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred eccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhccC
Confidence 44444444455555544443 445555555555555544443
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.70 E-value=1.3e-16 Score=198.10 Aligned_cols=132 Identities=42% Similarity=0.708 Sum_probs=112.7
Q ss_pred CCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccccccEEEecccC
Q 041551 557 NLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVG 636 (808)
Q Consensus 557 ~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~ 636 (808)
+|+.|+|++|..+..+|..++++++|+.|+|++|+.++.+|..+++++|+.|++++|..+..+|... ..|+.|+|++|.
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~-~nL~~L~Ls~n~ 857 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIS-TNISDLNLSRTG 857 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccc-cccCEeECCCCC
Confidence 4455555555555567777888888999999988888888888888899999999998888887654 358999999999
Q ss_pred CeecCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCcccc
Q 041551 637 IKELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFL 689 (808)
Q Consensus 637 i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp 689 (808)
|+++|.++..+++|+.|+|++|+.+..+|..+..+++|+.|++++|++|..++
T Consensus 858 i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 858 IEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 99999999999999999999999999999999999999999999999887553
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=2.1e-18 Score=183.23 Aligned_cols=246 Identities=22% Similarity=0.306 Sum_probs=148.0
Q ss_pred ccCCCCC-CCceeEEEecCCCCCCc---ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCC-CCC-CCCCC
Q 041551 482 KFSIGVP-FAEVRHLEWARCPLKTL---NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLT-KLP-DLSRA 555 (808)
Q Consensus 482 ~~~~~~~-~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~-~~p-~~~~l 555 (808)
.+|.... ++.+++|.+....+..+ ...+.+|+.|.+++|++.++...+..|+.|+.+++.+|++.. -+| ++..+
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l 102 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRL 102 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccc
Confidence 3444433 56666666666655555 345556666666666666666666666666666666664322 233 35566
Q ss_pred CCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC--CCCCCCEEeccCCCCCCccccccccc--ccEEE
Q 041551 556 KNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITSCH--MWRLE 631 (808)
Q Consensus 556 ~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~ 631 (808)
..|..|+|++| .+.+.|..+.+-+++-+|+|++ +++.++|..+ +++-|-.|+||+| .++.+|.-.... |+.|.
T Consensus 103 ~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 103 KDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred ccceeeecchh-hhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhh
Confidence 66666666665 4556666666666666666666 3466666544 5666666666665 345554443332 66666
Q ss_pred ecccCCe-----ecCcccccCCcCcEEEeecCCC-cccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeec
Q 041551 632 LTKVGIK-----ELPSSIECLSNLQYLYIWDCSE-LESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIV 705 (808)
Q Consensus 632 L~~n~i~-----~lp~~~~~l~~L~~L~L~~n~~-l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~ 705 (808)
|++|.+. .+|+ +++|+.|.+++.+. +..+|.++..|.+|..+|+|.| .+|..|.++.....+..+.
T Consensus 180 Ls~NPL~hfQLrQLPs----mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N----~Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPS----MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN----NLPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred cCCChhhHHHHhcCcc----chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc----CCCcchHHHhhhhhhheec
Confidence 6666544 2333 55666666655432 3467777777888888888876 5677777776655666678
Q ss_pred CCCCCCCCcccccccCCCccccccccccccccee
Q 041551 706 VPHCWEPCETHEVFCGLKHKSQRNLDRRSLGRIS 739 (808)
Q Consensus 706 l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~~~~ 739 (808)
++.|.+..... .-..-.++..++++.|.+...+
T Consensus 252 LS~N~iteL~~-~~~~W~~lEtLNlSrNQLt~LP 284 (1255)
T KOG0444|consen 252 LSGNKITELNM-TEGEWENLETLNLSRNQLTVLP 284 (1255)
T ss_pred cCcCceeeeec-cHHHHhhhhhhccccchhccch
Confidence 88887764322 1122355677788888876665
No 11
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.69 E-value=1.2e-17 Score=155.97 Aligned_cols=128 Identities=33% Similarity=0.541 Sum_probs=108.9
Q ss_pred EEecCccccCCCChHHHHHHHHHhC--CcceEeeC-CcCCCCcchHHHHHHHHhhcceeEEecccccchhhhHHHHHHHH
Q 041551 27 VFLSFRGEDTRDNFTSHLYSALWHN--NIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCLDELSKIF 103 (808)
Q Consensus 27 vflSy~~~D~~~~f~~~l~~~l~~~--g~~~~~d~-~l~~g~~~~~~i~~ai~~s~~~v~v~S~~y~~s~~c~~el~~~~ 103 (808)
|||||++.|.++.|+.+|..+|++. |+++|+++ |+.+|..+.+.|.++|++||+.|+|+|++|++|.||+.|+..++
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 7999999545789999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HhhhcCC--CeEEEEEeeeCCCccc-cccchhHHHHHhhhccCc-----cchhhHhhhh
Q 041551 104 ECKHDYG--QIVIPVFCRVDPSHVR-RQTGTFGDYFSKLGERYP-----EKMQRWGNTL 154 (808)
Q Consensus 104 ~~~~~~~--~~v~Pv~~~v~p~~vr-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l 154 (808)
++....+ ..|+|+||++.+.+++ .+.+.+...+.....-.. +....|+++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~ 139 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLR 139 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHh
Confidence 9887755 8999999999999999 688888877765544322 3456677664
No 12
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.67 E-value=2.3e-16 Score=147.73 Aligned_cols=134 Identities=39% Similarity=0.667 Sum_probs=111.6
Q ss_pred cccEEecCcc-ccCCCChHHHHHHHHHhCCcceEeeCCcCCCCcchHHHHHHHHhhcceeEEecccccchhhhHHHHHHH
Q 041551 24 KYDVFLSFRG-EDTRDNFTSHLYSALWHNNIETFIDNDLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCLDELSKI 102 (808)
Q Consensus 24 ~~dvflSy~~-~D~~~~f~~~l~~~l~~~g~~~~~d~~l~~g~~~~~~i~~ai~~s~~~v~v~S~~y~~s~~c~~el~~~ 102 (808)
.|||||||++ +|..+.|+.+|...|...|+.+|.|+....|.... +|.++|++|++.|+++|++|..|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 5899999999 55668999999999999999999998544444444 999999999999999999999999999999998
Q ss_pred HHhhhc-CCCeEEEEEeeeCCCccccccchhHHHHHhhhccCccch--hhHhhhhHhhh
Q 041551 103 FECKHD-YGQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGERYPEKM--QRWGNTLTEAA 158 (808)
Q Consensus 103 ~~~~~~-~~~~v~Pv~~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 158 (808)
.+.... ...+++||+++..|..+..+.+.+...+.......++.. ..|+.++..++
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~ 138 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVP 138 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhc
Confidence 887655 567899999998888888999999888877644555444 47887765543
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.66 E-value=2.5e-17 Score=174.48 Aligned_cols=56 Identities=18% Similarity=0.089 Sum_probs=27.0
Q ss_pred ccEEEecccCCeecCc-ccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecC
Q 041551 627 MWRLELTKVGIKELPS-SIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNC 682 (808)
Q Consensus 627 L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c 682 (808)
++.|+|..|++..+.. ++.+|++|+.|+|+.|.+...-+++..-.++|+.|+|++|
T Consensus 271 me~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 271 MEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred cceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 4455555555554422 3445555555555555543333444444455555555554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=6.2e-15 Score=170.17 Aligned_cols=220 Identities=22% Similarity=0.216 Sum_probs=165.8
Q ss_pred CCceeEEEecCCCCCCcccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCC
Q 041551 489 FAEVRHLEWARCPLKTLNICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLS 568 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~ 568 (808)
+++|++|++++|.++.+...+.+|+.|++++|.+..+|..+ .+|+.|+|++|. +..+|. .+++|+.|+|++| .
T Consensus 241 p~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~-Lt~LP~--~p~~L~~LdLS~N-~ 313 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDN-Q 313 (788)
T ss_pred CCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhch---hhcCEEECcCCc-cccccc--cccccceeECCCC-c
Confidence 57888888888888887666778888888888888877533 567788888886 445664 3478999999988 4
Q ss_pred CccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCcccccCC
Q 041551 569 LVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSSIECLS 648 (808)
Q Consensus 569 l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~ 648 (808)
+..+|.. ..+|+.|++++| .++.+|.. ..+|+.|+|++| .+..+|... ..|+.|++++|.|+.+|.. .+
T Consensus 314 L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l--p~~Lq~LdLS~N-~Ls~LP~lp-~~L~~L~Ls~N~L~~LP~l---~~ 382 (788)
T PRK15387 314 LASLPAL---PSELCKLWAYNN-QLTSLPTL--PSGLQELSVSDN-QLASLPTLP-SELYKLWAYNNRLTSLPAL---PS 382 (788)
T ss_pred cccCCCC---cccccccccccC-cccccccc--ccccceEecCCC-ccCCCCCCC-cccceehhhccccccCccc---cc
Confidence 4556643 245778888885 56777752 257999999987 566677643 4588899999999988864 35
Q ss_pred cCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCCCccccc
Q 041551 649 NLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLKHKSQR 728 (808)
Q Consensus 649 ~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~ 728 (808)
+|+.|+|++|.+ ..+|.. .++|+.|++++|. +..+|..+.. +..+.+.+|.+. ..|..++.++.+..+
T Consensus 383 ~L~~LdLs~N~L-t~LP~l---~s~L~~LdLS~N~-LssIP~l~~~------L~~L~Ls~NqLt-~LP~sl~~L~~L~~L 450 (788)
T PRK15387 383 GLKELIVSGNRL-TSLPVL---PSELKELMVSGNR-LTSLPMLPSG------LLSLSVYRNQLT-RLPESLIHLSSETTV 450 (788)
T ss_pred ccceEEecCCcc-cCCCCc---ccCCCEEEccCCc-CCCCCcchhh------hhhhhhccCccc-ccChHHhhccCCCeE
Confidence 789999999887 567753 3689999999986 6778876543 234677888887 456778999999999
Q ss_pred ccccccccce
Q 041551 729 NLDRRSLGRI 738 (808)
Q Consensus 729 ~l~~n~~~~~ 738 (808)
++++|.+...
T Consensus 451 dLs~N~Ls~~ 460 (788)
T PRK15387 451 NLEGNPLSER 460 (788)
T ss_pred ECCCCCCCch
Confidence 9999988643
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=4.8e-17 Score=146.71 Aligned_cols=159 Identities=25% Similarity=0.288 Sum_probs=119.7
Q ss_pred ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCC-CCCCCCCCcEEecCCCCCCccccccccCCCCcCE
Q 041551 506 NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLP-DLSRAKNLEILWLRGCLSLVETHSTIQYLNKLED 584 (808)
Q Consensus 506 ~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p-~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~ 584 (808)
.+.+++++.|.|++|+++.+|+.+..+.+|+.|++++|++ ..+| .++.+++|+.|++.-| .+..+|.+|+.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchh-hhhcCccccCCCchhhh
Confidence 4567788889999999999999999999999999999974 5555 5999999999999987 56688999999999999
Q ss_pred EecCCCCCC-CcCCCcC-CCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCcccccCCcCcEEEeecCCCcc
Q 041551 585 LDLDYCISL-TSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELE 662 (808)
Q Consensus 585 L~l~~~~~l-~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~ 662 (808)
|||++|+.- ..+|..+ .++.|+ -|+|+.|.++-+|..++.|++|+.|.+..|.+ -
T Consensus 107 ldltynnl~e~~lpgnff~m~tlr----------------------alyl~dndfe~lp~dvg~lt~lqil~lrdndl-l 163 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLR----------------------ALYLGDNDFEILPPDVGKLTNLQILSLRDNDL-L 163 (264)
T ss_pred hhccccccccccCCcchhHHHHHH----------------------HHHhcCCCcccCChhhhhhcceeEEeeccCch-h
Confidence 999986522 2344443 334444 45555566667777777777777777777765 5
Q ss_pred cccccccCCCCCCEEEeecCCCCccccC
Q 041551 663 SISSSIFKLNSLESIDISNCSNLKRFLE 690 (808)
Q Consensus 663 ~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 690 (808)
++|..++.++.|++|.+.+|. |.-+|.
T Consensus 164 ~lpkeig~lt~lrelhiqgnr-l~vlpp 190 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNR-LTVLPP 190 (264)
T ss_pred hCcHHHHHHHHHHHHhcccce-eeecCh
Confidence 677777777777777777764 444443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=5.5e-15 Score=171.76 Aligned_cols=226 Identities=16% Similarity=0.173 Sum_probs=159.0
Q ss_pred CCceeEEEecCCCCCCc-ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCC
Q 041551 489 FAEVRHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGC 566 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n 566 (808)
++.|+.|++++|.++.+ .....+|+.|++++|+++.+|..+. .+|+.|+|++|.+ ..+|. +. .+|+.|++++|
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L-~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRI-TELPERLP--SALQSLDLFHN 272 (754)
T ss_pred ccCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCcc-CcCChhHh--CCCCEEECcCC
Confidence 46788888888888887 3334688889999888888887653 4788889988864 46664 42 57888899877
Q ss_pred CCCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCccccc
Q 041551 567 LSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSSIEC 646 (808)
Q Consensus 567 ~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~ 646 (808)
.+..+|..+. ++|+.|++++| .++.+|..+. ++|+.|++++| .+..+|......|+.|++++|.++.+|..+.
T Consensus 273 -~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp-~sL~~L~Ls~N-~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~- 345 (754)
T PRK15370 273 -KISCLPENLP--EELRYLSVYDN-SIRTLPAHLP-SGITHLNVQSN-SLTALPETLPPGLKTLEAGENALTSLPASLP- 345 (754)
T ss_pred -ccCccccccC--CCCcEEECCCC-ccccCcccch-hhHHHHHhcCC-ccccCCccccccceeccccCCccccCChhhc-
Confidence 4556776654 57889999885 5777776442 46888888887 4556676555668889999999888887664
Q ss_pred CCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCc---ccccccCCC
Q 041551 647 LSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCE---THEVFCGLK 723 (808)
Q Consensus 647 l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~---~~~~f~~l~ 723 (808)
++|+.|+|++|++ ..+|..+. ++|+.|+|++|. +..+|..... .+..+.+.+|.+... .+..+..++
T Consensus 346 -~sL~~L~Ls~N~L-~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~~-----sL~~LdLs~N~L~~LP~sl~~~~~~~~ 415 (754)
T PRK15370 346 -PELQVLDVSKNQI-TVLPETLP--PTITTLDVSRNA-LTNLPENLPA-----ALQIMQASRNNLVRLPESLPHFRGEGP 415 (754)
T ss_pred -CcccEEECCCCCC-CcCChhhc--CCcCEEECCCCc-CCCCCHhHHH-----HHHHHhhccCCcccCchhHHHHhhcCC
Confidence 6899999988876 56776553 688999999874 5556543221 233455666666532 223334456
Q ss_pred ccccccccccccc
Q 041551 724 HKSQRNLDRRSLG 736 (808)
Q Consensus 724 ~l~~~~l~~n~~~ 736 (808)
.+..+++.+|.+.
T Consensus 416 ~l~~L~L~~Npls 428 (754)
T PRK15370 416 QPTRIIVEYNPFS 428 (754)
T ss_pred CccEEEeeCCCcc
Confidence 6677778777764
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.56 E-value=2.8e-17 Score=166.95 Aligned_cols=217 Identities=24% Similarity=0.250 Sum_probs=134.0
Q ss_pred CCceeEEEecCCCCCCc---ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCC
Q 041551 489 FAEVRHLEWARCPLKTL---NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRG 565 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~ 565 (808)
...+.+|.+.+|.+..+ ...+..++.|+.++|++..+|+.++.+.+|+.|+.++|.+....++++.+..|+.|+..+
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATN 146 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccc
Confidence 66788888888888777 556677778888888888888888888888888888886555545577777777777777
Q ss_pred CCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCC----------------------CCCccccc
Q 041551 566 CLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCS----------------------NLKIFPEI 622 (808)
Q Consensus 566 n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~----------------------~l~~~p~~ 622 (808)
| .+..+|++++++.+|..|++.+| .++.+|+.. .++.|++|+...|- .+..+|+.
T Consensus 147 N-~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef 224 (565)
T KOG0472|consen 147 N-QISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEF 224 (565)
T ss_pred c-ccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCC
Confidence 6 44566666666666666666663 344444332 44455555444431 33444444
Q ss_pred cccc-ccEEEecccCCeecCcccc-cCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCc
Q 041551 623 TSCH-MWRLELTKVGIKELPSSIE-CLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGF 700 (808)
Q Consensus 623 ~~~~-L~~L~L~~n~i~~lp~~~~-~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~ 700 (808)
.++. |.+|.+..|.|+.+|..+. +|++|..|||.+|++ +++|..++.+.+|+.||+|+|. +..+|..-+++ .
T Consensus 225 ~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl-ke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl----h 298 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL-KEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL----H 298 (565)
T ss_pred CccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc-ccCchHHHHhhhhhhhcccCCc-cccCCcccccc----e
Confidence 4443 5555555555555555543 566666666666655 6666666666666666666653 33343332222 3
Q ss_pred eeeecCCCCCCCC
Q 041551 701 AFCIVVPHCWEPC 713 (808)
Q Consensus 701 ~~~l~l~~~~~~~ 713 (808)
+..+.+.+|.+..
T Consensus 299 L~~L~leGNPlrT 311 (565)
T KOG0472|consen 299 LKFLALEGNPLRT 311 (565)
T ss_pred eeehhhcCCchHH
Confidence 3444555555443
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.56 E-value=3.4e-17 Score=166.37 Aligned_cols=196 Identities=21% Similarity=0.212 Sum_probs=171.6
Q ss_pred cCCCCC-CCceeEEEecCCCCCCc---ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCC
Q 041551 483 FSIGVP-FAEVRHLEWARCPLKTL---NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNL 558 (808)
Q Consensus 483 ~~~~~~-~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L 558 (808)
+|..+. ..+++.|+.+.|.+..+ ++.+..|..|+..+|++.++|+++.++.+|..|++.+|+.....|+.-+++.|
T Consensus 106 lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L 185 (565)
T KOG0472|consen 106 LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRL 185 (565)
T ss_pred ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHH
Confidence 344333 66788899999988888 66778889999999999999999999999999999999866655664459999
Q ss_pred cEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCccccccccc---ccEEEeccc
Q 041551 559 EILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCH---MWRLELTKV 635 (808)
Q Consensus 559 ~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~---L~~L~L~~n 635 (808)
++|+...| .++.+|+.++.+.+|..|++.. +++..+|..-++..|++|+++.| .++.+|...... +..|+|..|
T Consensus 186 ~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN 262 (565)
T KOG0472|consen 186 KHLDCNSN-LLETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN 262 (565)
T ss_pred Hhcccchh-hhhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc
Confidence 99999997 8889999999999999999999 57999997669999999999887 677777766533 888999999
Q ss_pred CCeecCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCC
Q 041551 636 GIKELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCS 683 (808)
Q Consensus 636 ~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~ 683 (808)
+++++|..+.-|.+|.+||+++|.+ ..+|.+++++ .|+.|-+.+||
T Consensus 263 klke~Pde~clLrsL~rLDlSNN~i-s~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 263 KLKEVPDEICLLRSLERLDLSNNDI-SSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccCchHHHHhhhhhhhcccCCcc-ccCCcccccc-eeeehhhcCCc
Confidence 9999999999999999999998887 8899999999 99999999987
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=2.3e-16 Score=142.34 Aligned_cols=159 Identities=21% Similarity=0.228 Sum_probs=125.8
Q ss_pred hhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCC
Q 041551 528 DVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLK 606 (808)
Q Consensus 528 ~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~ 606 (808)
++-++.+...|-||+|++....|.+..+.+|+.|++.+| .++++|.+++.+++|+.|+++- +.+..+|..+ .++.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhh
Confidence 345678888899999987777778999999999999987 6778999999999999999987 5688888877 668888
Q ss_pred EEeccCCCCCCcccccccccccEEEecccCCeecCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCc
Q 041551 607 ELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLK 686 (808)
Q Consensus 607 ~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 686 (808)
.|+|++|+..+ ..+|..|..++.|+-|+|++|.+ +.+|..++++++|+.|.+..|..+
T Consensus 106 vldltynnl~e--------------------~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll- 163 (264)
T KOG0617|consen 106 VLDLTYNNLNE--------------------NSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL- 163 (264)
T ss_pred hhhcccccccc--------------------ccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-
Confidence 87777763211 25788888999999999999988 899999999999999999998644
Q ss_pred cccCCCCCcCCCCceeeecCCCCCCCC
Q 041551 687 RFLEIPSCNIDGGFAFCIVVPHCWEPC 713 (808)
Q Consensus 687 ~lp~~~~~~~~~~~~~~l~l~~~~~~~ 713 (808)
++|.-.+.+. .+.++.+.+|.+.-
T Consensus 164 ~lpkeig~lt---~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 164 SLPKEIGDLT---RLRELHIQGNRLTV 187 (264)
T ss_pred hCcHHHHHHH---HHHHHhcccceeee
Confidence 6666544332 33445566665543
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.53 E-value=3.5e-14 Score=165.11 Aligned_cols=225 Identities=17% Similarity=0.224 Sum_probs=174.7
Q ss_pred CceeEEEecCCCCCCcc-cCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCC
Q 041551 490 AEVRHLEWARCPLKTLN-ICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCL 567 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l~-~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~ 567 (808)
.+...|++.++.+..++ ..+++|+.|+|++|+++.+|..+. .+|++|++++|.+ ..+|. + .++|+.|+|++|.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~~l--~~~L~~L~Ls~N~ 252 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPATL--PDTIQEMELSINR 252 (754)
T ss_pred cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCChhh--hccccEEECcCCc
Confidence 45678999999988884 356789999999999999998764 5999999999974 56674 4 3589999999995
Q ss_pred CCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCcccccC
Q 041551 568 SLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSSIECL 647 (808)
Q Consensus 568 ~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l 647 (808)
+..+|..+. .+|+.|++++| .+..+|..+. ++|+.|++++| .++.+|......|+.|++++|.++.+|..+.
T Consensus 253 -L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~-~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~-- 324 (754)
T PRK15370 253 -ITELPERLP--SALQSLDLFHN-KISCLPENLP-EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLP-- 324 (754)
T ss_pred -cCcCChhHh--CCCCEEECcCC-ccCccccccC-CCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCcccc--
Confidence 557887764 58999999974 6888887653 68999999998 5677777665668999999999999987653
Q ss_pred CcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCCCcccc
Q 041551 648 SNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLKHKSQ 727 (808)
Q Consensus 648 ~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~ 727 (808)
++|+.|++++|.+ ..+|..+. ++|+.|++++|. +..+|.... ..+..+.+.+|.+....+.. ...+..
T Consensus 325 ~sL~~L~Ls~N~L-t~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp-----~~L~~LdLs~N~Lt~LP~~l---~~sL~~ 392 (754)
T PRK15370 325 PGLKTLEAGENAL-TSLPASLP--PELQVLDVSKNQ-ITVLPETLP-----PTITTLDVSRNALTNLPENL---PAALQI 392 (754)
T ss_pred ccceeccccCCcc-ccCChhhc--CcccEEECCCCC-CCcCChhhc-----CCcCEEECCCCcCCCCCHhH---HHHHHH
Confidence 7899999999986 66887664 799999999985 666664221 13456788888877443322 235777
Q ss_pred ccccccccccee
Q 041551 728 RNLDRRSLGRIS 739 (808)
Q Consensus 728 ~~l~~n~~~~~~ 739 (808)
+++++|.+..++
T Consensus 393 LdLs~N~L~~LP 404 (754)
T PRK15370 393 MQASRNNLVRLP 404 (754)
T ss_pred HhhccCCcccCc
Confidence 888888887655
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.50 E-value=1.2e-13 Score=159.57 Aligned_cols=219 Identities=20% Similarity=0.215 Sum_probs=169.0
Q ss_pred CCceeEEEecCCCCCCcccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCC
Q 041551 489 FAEVRHLEWARCPLKTLNICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLS 568 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~ 568 (808)
+++|+.|.+.+|.++.++..+++|++|+|++|+++.+|.. .++|+.|+|++|. +..+|. .+++|+.|++++| .
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~--lp~~L~~L~Ls~N-~ 293 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPA--LPSGLCKLWIFGN-Q 293 (788)
T ss_pred hcCCCEEEccCCcCCCCCCCCCCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhh--chhhcCEEECcCC-c
Confidence 3579999999999999977789999999999999999854 4688999999996 455664 2367889999998 4
Q ss_pred CccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCcccccCC
Q 041551 569 LVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSSIECLS 648 (808)
Q Consensus 569 l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~ 648 (808)
+..+|. .+++|+.|++++| .++.+|.. ..+|+.|++++| .++.+|... ..|+.|+|++|+|+.+|.. .+
T Consensus 294 Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l--p~~L~~L~Ls~N-~L~~LP~lp-~~Lq~LdLS~N~Ls~LP~l---p~ 362 (788)
T PRK15387 294 LTSLPV---LPPGLQELSVSDN-QLASLPAL--PSELCKLWAYNN-QLTSLPTLP-SGLQELSVSDNQLASLPTL---PS 362 (788)
T ss_pred cccccc---cccccceeECCCC-ccccCCCC--cccccccccccC-ccccccccc-cccceEecCCCccCCCCCC---Cc
Confidence 566775 3478999999996 67778763 356888999988 456677533 4599999999999999874 35
Q ss_pred cCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCCCccccc
Q 041551 649 NLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLKHKSQR 728 (808)
Q Consensus 649 ~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~ 728 (808)
+|+.|++++|.+ ..+|.. .++|+.|++++|. +..+|..+.. +..+.+++|.+.. .|.. +.++..+
T Consensus 363 ~L~~L~Ls~N~L-~~LP~l---~~~L~~LdLs~N~-Lt~LP~l~s~------L~~LdLS~N~Lss-IP~l---~~~L~~L 427 (788)
T PRK15387 363 ELYKLWAYNNRL-TSLPAL---PSGLKELIVSGNR-LTSLPVLPSE------LKELMVSGNRLTS-LPML---PSGLLSL 427 (788)
T ss_pred ccceehhhcccc-ccCccc---ccccceEEecCCc-ccCCCCcccC------CCEEEccCCcCCC-CCcc---hhhhhhh
Confidence 788889988876 568863 3679999999985 6678876542 3457888888774 3433 3456778
Q ss_pred ccccccccceee
Q 041551 729 NLDRRSLGRISY 740 (808)
Q Consensus 729 ~l~~n~~~~~~~ 740 (808)
++++|.+..++.
T Consensus 428 ~Ls~NqLt~LP~ 439 (788)
T PRK15387 428 SVYRNQLTRLPE 439 (788)
T ss_pred hhccCcccccCh
Confidence 999999887764
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=5.4e-15 Score=165.29 Aligned_cols=236 Identities=19% Similarity=0.200 Sum_probs=158.4
Q ss_pred CCceeEEEecCCCCCCc--ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCC
Q 041551 489 FAEVRHLEWARCPLKTL--NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRG 565 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~ 565 (808)
-++++.|+.+.|++..+ .+.+.+|+++++++|++..+|++++.+.+|+.|+..+|.+ ..+|. +...++|+.|.+..
T Consensus 218 g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred CcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhh
Confidence 46888899999998877 6677899999999999999998899999999999999965 66775 88888999999888
Q ss_pred CCCCccccccccCCCCcCEEecCCCCCCCcCCCcC--CC-CCCCEEeccCCCCCCcc-----------------------
Q 041551 566 CLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI--HS-KHLKELSLRGCSNLKIF----------------------- 619 (808)
Q Consensus 566 n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l-~~L~~L~L~~~~~l~~~----------------------- 619 (808)
| .+..+|+....+++|++|+|..| ++..+|..+ .+ .+|..|+.+.| .+...
T Consensus 297 n-el~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN~Ltd 373 (1081)
T KOG0618|consen 297 N-ELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANNHLTD 373 (1081)
T ss_pred h-hhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcCcccc
Confidence 8 66778888888999999999884 577777643 11 12334433333 12222
Q ss_pred ---cccccc-cccEEEecccCCeecCcc-cccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCC
Q 041551 620 ---PEITSC-HMWRLELTKVGIKELPSS-IECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSC 694 (808)
Q Consensus 620 ---p~~~~~-~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~ 694 (808)
|...+. .|+.|+|++|.+.++|.+ +.++..|+.|+||||++ +.+|..+..++.|++|...+|. +..+|++..
T Consensus 374 ~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~- 450 (1081)
T KOG0618|consen 374 SCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQ- 450 (1081)
T ss_pred cchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCc-eeechhhhh-
Confidence 222211 167777777777777665 56677777777777665 6666666666777777666543 445554332
Q ss_pred cCCCCceeeecCCCCCCCCcc-cccccCCCcccccccccccc
Q 041551 695 NIDGGFAFCIVVPHCWEPCET-HEVFCGLKHKSQRNLDRRSL 735 (808)
Q Consensus 695 ~~~~~~~~~l~l~~~~~~~~~-~~~f~~l~~l~~~~l~~n~~ 735 (808)
...+.+++++.|.+.... +..... +.|+.+++++|..
T Consensus 451 ---l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 451 ---LPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred ---cCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 113344556666554321 111111 6677777777764
No 23
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.41 E-value=1.5e-11 Score=151.88 Aligned_cols=270 Identities=16% Similarity=0.140 Sum_probs=166.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHh----cC-c---------c-c-
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVL----ND-R---------I-L- 230 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~----~~-~---------~-~- 230 (808)
.+++.|+|++|.||||++.++.++ ++.++|+..-.. ..+...+...++..+. .. . . .
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~----~~~~~w~~l~~~---d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAG----KNNLGWYSLDES---DNQPERFASYLIAALQQATNGHCSKSEALAQKRQYAS 104 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh----CCCeEEEecCcc---cCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCC
Confidence 788999999999999999998864 236888863221 1232333333333331 10 0 0 0
Q ss_pred --ccHHHHHHHHc--cceEEEEEecCCCH---HHHHHHHhccCCCCCCCEEEEEeCchhhhh--hc-CCCeEEEec----
Q 041551 231 --RDVRSQLNRLA--RKMVLLVFDDVNNP---RQIESLIGHLDHLASGSRVIITTRDKQVLK--NC-WAGQIYQMK---- 296 (808)
Q Consensus 231 --~~~~~l~~~L~--~~~~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~--~~-~~~~~~~l~---- 296 (808)
..+..+...+. +.+++|||||+... ...+.+...+....++.++|||||...... .. ......++.
T Consensus 105 ~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l 184 (903)
T PRK04841 105 LSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQL 184 (903)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhC
Confidence 12223333343 57899999999653 222233332333456778889999853221 11 112345565
Q ss_pred CCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhhcCCCHHHHHHHHhhhhcCcchhHHHHHH-H
Q 041551 297 ELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIIPHVEIQEVLK-I 375 (808)
Q Consensus 297 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~-~ 375 (808)
+|+.+|+.+||..... ..-..+.+.++.+.++|+|+++..++..+.+.... .......+...+...+...+. -
T Consensus 185 ~f~~~e~~~ll~~~~~-----~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 258 (903)
T PRK04841 185 AFDHQEAQQFFDQRLS-----SPIEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEE 258 (903)
T ss_pred CCCHHHHHHHHHhccC-----CCCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHH
Confidence 9999999999987652 12234557889999999999999988777533210 011112222112234555433 3
Q ss_pred hhcCCcHHHHHHHhhhhhccCCcchhHHHHHHhhcCCcchhhhhhhhcccceee-ec--CCeEEecHHHHHHHHHHHhhc
Q 041551 376 SYDSLDDSQKNIFLDIACFLEGEHRDKVISFFDASGLEAKIELSVLEGKSLINL-DV--FDQIRMHDLLRDMGREIVRNE 452 (808)
Q Consensus 376 sy~~L~~~~k~~fl~la~fp~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~-~~--~~~~~mHdlv~~~~~~i~~~e 452 (808)
.++.||++.+.++..+|+++ .+..+.+..+... -.....+..|.+.+++.. .+ ...|++|++++++.+.....+
T Consensus 259 v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~--~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 259 VLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGE--ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred HHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCC--CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 47899999999999999986 4554444444331 123566899999999653 22 237999999999999887544
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.37 E-value=8.9e-14 Score=155.71 Aligned_cols=189 Identities=21% Similarity=0.229 Sum_probs=122.0
Q ss_pred CCceeEEEecCCCCCCc---ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecC
Q 041551 489 FAEVRHLEWARCPLKTL---NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLR 564 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~ 564 (808)
+.+|++++++.+.+..+ ...+.+|+.|...+|++..+|..+....+|+.|.+..|.. ..+|. ...+++|++|+|.
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh-hhCCCcccccceeeeeeeh
Confidence 67888888888887777 5567788888888888888888888888888888888864 44444 6668888888888
Q ss_pred CCCCCcccccccc--------------------------CCCCcCEEecCCCCCCC-cCCCcCCCCCCCEEeccCCCCCC
Q 041551 565 GCLSLVETHSTIQ--------------------------YLNKLEDLDLDYCISLT-SLPTSIHSKHLKELSLRGCSNLK 617 (808)
Q Consensus 565 ~n~~l~~~p~~~~--------------------------~l~~L~~L~l~~~~~l~-~lp~~~~l~~L~~L~L~~~~~l~ 617 (808)
.| .+..+|+.+. .+..|+.|.+.+|.... .+|...+.++|+.|+|++| .+.
T Consensus 319 ~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~ 396 (1081)
T KOG0618|consen 319 SN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLN 396 (1081)
T ss_pred hc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccc
Confidence 87 4444443211 12234444444432211 1233335566777777766 455
Q ss_pred ccccccccc---ccEEEecccCCeecCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecC
Q 041551 618 IFPEITSCH---MWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNC 682 (808)
Q Consensus 618 ~~p~~~~~~---L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c 682 (808)
.||...... |+.|+||+|.++.+|..+.+++.|++|...+|.+ ..+| .+..++.|+.+|++.|
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l-~~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQL-LSFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCce-eech-hhhhcCcceEEecccc
Confidence 666554443 6666777777777776666666666666655554 5566 4666666666666654
No 25
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.35 E-value=3.4e-13 Score=118.41 Aligned_cols=87 Identities=32% Similarity=0.582 Sum_probs=74.9
Q ss_pred EEecCccccCCCChHHHHHHHHHhCCcceEeeCCcCCCCcchHHHHHHHHhhcceeEEecccccchhhhHHHHHHHHHhh
Q 041551 27 VFLSFRGEDTRDNFTSHLYSALWHNNIETFIDNDLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCLDELSKIFECK 106 (808)
Q Consensus 27 vflSy~~~D~~~~f~~~l~~~l~~~g~~~~~d~~l~~g~~~~~~i~~ai~~s~~~v~v~S~~y~~s~~c~~el~~~~~~~ 106 (808)
|||||+.+| ..|+.+|...|+..|+++|.|+++..|+.+...|.++|++|+..|+++|++|..|.||..|+..+.+
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 899999999 7899999999999999999999889999999999999999999999999999999999999987632
Q ss_pred hcCCCeEEEEEee
Q 041551 107 HDYGQIVIPVFCR 119 (808)
Q Consensus 107 ~~~~~~v~Pv~~~ 119 (808)
.+..++||..+
T Consensus 77 --~~~~iipv~~~ 87 (102)
T PF13676_consen 77 --RGKPIIPVRLD 87 (102)
T ss_dssp --TSESEEEEECS
T ss_pred --CCCEEEEEEEC
Confidence 34479999844
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.30 E-value=1.2e-13 Score=140.76 Aligned_cols=243 Identities=16% Similarity=0.107 Sum_probs=164.1
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccc-cchhhcccccceeccCCCCCCCCCCC--CCCCCCCcEE
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQL-WDDVQDLVNLKEIDLSRSESLTKLPD--LSRAKNLEIL 561 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L 561 (808)
|+....+.+..|.++.+ +..+++|+.|+|++|+|+.+ |..|.++++|..|-+.+|+.++.+|. |.+|..|+.|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 56778889999999988 77889999999999999988 55699999988888888656888884 9999999999
Q ss_pred ecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCc-C-CCCCCCEEeccCCCCCC------------cccccccc--
Q 041551 562 WLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTS-I-HSKHLKELSLRGCSNLK------------IFPEITSC-- 625 (808)
Q Consensus 562 ~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~-~l~~L~~L~L~~~~~l~------------~~p~~~~~-- 625 (808)
.+.-|+..-.....+..|++|..|.+.+ +.+..++.. + .+.+++++++..|..+- ..|...+.
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 9988865555566788999999999998 467888773 3 77888888877664111 11110000
Q ss_pred ----------------------cccEE----EecccCCeecCc-ccccCCcCcEEEeecCCCcccccccccCCCCCCEEE
Q 041551 626 ----------------------HMWRL----ELTKVGIKELPS-SIECLSNLQYLYIWDCSELESISSSIFKLNSLESID 678 (808)
Q Consensus 626 ----------------------~L~~L----~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~ 678 (808)
.++.+ ....+.....|. .|..|++|+.|+|++|.+...-+.+|.++..++.|.
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 01111 111111222232 266777777777777777555556677777777777
Q ss_pred eecCCCCccccCCCCCcCCCC-ceeeecCCCCCCCCcccccccCCCccccccccccccc
Q 041551 679 ISNCSNLKRFLEIPSCNIDGG-FAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLG 736 (808)
Q Consensus 679 l~~c~~l~~lp~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~ 736 (808)
|..|+ +..+ ....+.+. -+..+.+.+|.|.+..|..|..+..+..+++-.|-++
T Consensus 305 L~~N~-l~~v---~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 305 LTRNK-LEFV---SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cCcch-HHHH---HHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 77763 3332 22222221 1334667777777777777777777777777666554
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=2e-12 Score=137.70 Aligned_cols=187 Identities=21% Similarity=0.298 Sum_probs=153.6
Q ss_pred CceeEEEecCCCCCCc---ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCC-CCCCCCCCcEEecCC
Q 041551 490 AEVRHLEWARCPLKTL---NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLP-DLSRAKNLEILWLRG 565 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p-~~~~l~~L~~L~L~~ 565 (808)
.--...+++.|.+..+ ...+..|..|.|.+|.+..+|..+.++..|.+|||+.|++ ..+| .+..|+ |+.|.+++
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEec
Confidence 3344567788887777 4556778889999999999999999999999999999975 4455 477776 99999998
Q ss_pred CCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccccccccc-ccEEEecccCCeecCcc
Q 041551 566 CLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCH-MWRLELTKVGIKELPSS 643 (808)
Q Consensus 566 n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~-L~~L~L~~n~i~~lp~~ 643 (808)
| .++.+|..++.+..|..||.+.| .+..+|..+ ++.+|+.|++..|..+ .+|.....+ |..||+++|+|..||-.
T Consensus 153 N-kl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi~lDfScNkis~iPv~ 229 (722)
T KOG0532|consen 153 N-KLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLIRLDFSCNKISYLPVD 229 (722)
T ss_pred C-ccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCceeeeecccCceeecchh
Confidence 8 67899999999999999999986 577788776 8999999999999544 455444444 99999999999999999
Q ss_pred cccCCcCcEEEeecCCCcccccccccC---CCCCCEEEeecC
Q 041551 644 IECLSNLQYLYIWDCSELESISSSIFK---LNSLESIDISNC 682 (808)
Q Consensus 644 ~~~l~~L~~L~L~~n~~l~~lp~~~~~---l~~L~~L~l~~c 682 (808)
|.+|+.|++|-|.+|++ .+-|..++. ..=.++|+..-|
T Consensus 230 fr~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchhc
Confidence 99999999999988887 777766543 344567888777
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=3.7e-12 Score=135.71 Aligned_cols=172 Identities=19% Similarity=0.233 Sum_probs=145.8
Q ss_pred CcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCC-CCCCCCCCcEEecCCCCCCccccccccCCCCcCEEe
Q 041551 508 CAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLP-DLSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLD 586 (808)
Q Consensus 508 ~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p-~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~ 586 (808)
.+..-...+|+.|++.++|..+..+..|+.+.|..|.+ ..+| .+.++..|.+|+|+.| .+..+|..+..|+ |+.|-
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEE
Confidence 44556678999999999999999999999999999975 4555 5999999999999998 5668888888887 89999
Q ss_pred cCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccccccccc--ccEEEecccCCeecCcccccCCcCcEEEeecCCCccc
Q 041551 587 LDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELES 663 (808)
Q Consensus 587 l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~ 663 (808)
+++ ++++.+|..+ .+..|..|+.+.|. +..+|.-.+.. |+.|.+..|.+..+|..+..|+ |..||++.|++ ..
T Consensus 150 ~sN-Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNki-s~ 225 (722)
T KOG0532|consen 150 VSN-NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKI-SY 225 (722)
T ss_pred Eec-CccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCce-ee
Confidence 998 6799999988 56889999999995 45555544444 8899999999999999999764 88999977665 89
Q ss_pred ccccccCCCCCCEEEeecCCCCcc
Q 041551 664 ISSSIFKLNSLESIDISNCSNLKR 687 (808)
Q Consensus 664 lp~~~~~l~~L~~L~l~~c~~l~~ 687 (808)
+|-.|.+|+.|++|.|.+|| |++
T Consensus 226 iPv~fr~m~~Lq~l~LenNP-LqS 248 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNP-LQS 248 (722)
T ss_pred cchhhhhhhhheeeeeccCC-CCC
Confidence 99999999999999999998 443
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.12 E-value=5.3e-12 Score=135.97 Aligned_cols=101 Identities=19% Similarity=0.043 Sum_probs=44.0
Q ss_pred ceeEEEecCCCCCCc--------ccCcccceEeecCCCCccc-------ccchhhcccccceeccCCCCCCCCCCC-CCC
Q 041551 491 EVRHLEWARCPLKTL--------NICAEKLVSLKMPRSKVQQ-------LWDDVQDLVNLKEIDLSRSESLTKLPD-LSR 554 (808)
Q Consensus 491 ~Lr~L~l~~~~l~~l--------~~~~~~L~~L~L~~n~l~~-------l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~ 554 (808)
.|+.|++.++.+..- ....++|+.|+++++.+.. ++..+..+++|+.|++++|.+....+. +..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 355555555554221 2233345555555554432 122344455555555555544332221 222
Q ss_pred C---CCCcEEecCCCCCCc----cccccccCC-CCcCEEecCCCC
Q 041551 555 A---KNLEILWLRGCLSLV----ETHSTIQYL-NKLEDLDLDYCI 591 (808)
Q Consensus 555 l---~~L~~L~L~~n~~l~----~~p~~~~~l-~~L~~L~l~~~~ 591 (808)
+ ++|++|++++|.... .+...+..+ ++|+.|++++|.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 2 225555555553321 122233344 555555555543
No 30
>PF05729 NACHT: NACHT domain
Probab=99.09 E-value=1.3e-09 Score=104.91 Aligned_cols=142 Identities=20% Similarity=0.360 Sum_probs=86.0
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhccc------CceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL- 240 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L- 240 (808)
|++.|+|.+|+||||+++.++.++.... ...+|+. .+..........+...+........ ......+...+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~ 78 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESI-APIEELLQELLE 78 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccch-hhhHHHHHHHHH
Confidence 5799999999999999999998765543 2333433 3333322222233333322222111 11111222222
Q ss_pred ccceEEEEEecCCCHHH---------HHHHHhc-cCC-CCCCCEEEEEeCchhh---hhhcCCCeEEEecCCChhhHHHH
Q 041551 241 ARKMVLLVFDDVNNPRQ---------IESLIGH-LDH-LASGSRVIITTRDKQV---LKNCWAGQIYQMKELVYTDAQKL 306 (808)
Q Consensus 241 ~~~~~LlVlDdv~~~~~---------~~~l~~~-l~~-~~~gs~IiiTTR~~~v---~~~~~~~~~~~l~~L~~~ea~~L 306 (808)
..+++++|+|+++.... +..++.. +.. ..++++++||+|.... .........+++++|++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 57899999999975332 2222222 221 3568999999998876 22234446899999999999999
Q ss_pred HHHHh
Q 041551 307 FSQYA 311 (808)
Q Consensus 307 f~~~~ 311 (808)
+.++.
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 98765
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.08 E-value=7.9e-12 Score=127.71 Aligned_cols=194 Identities=19% Similarity=0.197 Sum_probs=126.4
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCC-CCcccccch-hhcccccceeccCCCCCCCCCCC-CCCCCCCcEE
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPR-SKVQQLWDD-VQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEIL 561 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~-n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L 561 (808)
.++||.|+++.|.++.+ +..+.+|.+|-+.+ |+|+.+|.+ |++|..|+.|.+.-|++.-...+ |..+++|..|
T Consensus 90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lL 169 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLL 169 (498)
T ss_pred hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchh
Confidence 88999999999999988 66777777766655 999999987 89999999999998865444444 8888899888
Q ss_pred ecCCCCCCccccc-cccCCCCcCEEecCCCCCCC----------------------------------------------
Q 041551 562 WLRGCLSLVETHS-TIQYLNKLEDLDLDYCISLT---------------------------------------------- 594 (808)
Q Consensus 562 ~L~~n~~l~~~p~-~~~~l~~L~~L~l~~~~~l~---------------------------------------------- 594 (808)
.+..| ....++. .+..+..++.+.+..|..+.
T Consensus 170 slyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~ 248 (498)
T KOG4237|consen 170 SLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL 248 (498)
T ss_pred cccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH
Confidence 88887 4445554 56777777777665543111
Q ss_pred ---------------cCCCc-C-CCCCCCEEeccCCCCCCccccccccc--ccEEEecccCCeecCcc-cccCCcCcEEE
Q 041551 595 ---------------SLPTS-I-HSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIKELPSS-IECLSNLQYLY 654 (808)
Q Consensus 595 ---------------~lp~~-~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~~lp~~-~~~l~~L~~L~ 654 (808)
..|.. + .+++|+.|+|++|.....-+..+... +++|.|..|+|..+... |.++..|+.|+
T Consensus 249 esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~ 328 (498)
T KOG4237|consen 249 ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLS 328 (498)
T ss_pred HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeee
Confidence 01110 1 35566666666653332222222222 56666666666655333 55666666666
Q ss_pred eecCCCcccccccccCCCCCCEEEeecCC
Q 041551 655 IWDCSELESISSSIFKLNSLESIDISNCS 683 (808)
Q Consensus 655 L~~n~~l~~lp~~~~~l~~L~~L~l~~c~ 683 (808)
|.+|++...-|..|..+.+|.+|++-.|+
T Consensus 329 L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 329 LYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred ecCCeeEEEecccccccceeeeeehccCc
Confidence 66666655555556666666666665544
No 32
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.05 E-value=1.2e-08 Score=115.17 Aligned_cols=268 Identities=16% Similarity=0.189 Sum_probs=169.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCccc----------------
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRIL---------------- 230 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~---------------- 230 (808)
-|++.|..++|.|||||+.+++. ....=..+.|++.-.+ ..+...+...++..+......
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~---dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~ 112 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDES---DNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVS 112 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCc---cCCHHHHHHHHHHHHHHhCccccHHHHHHHHhccccc
Confidence 78899999999999999999988 3444467888874322 234445555555444321110
Q ss_pred --ccHHHHHHHHc--cceEEEEEecCC---CHH---HHHHHHhccCCCCCCCEEEEEeCchhhhhhc---CCCeEEEec-
Q 041551 231 --RDVRSQLNRLA--RKMVLLVFDDVN---NPR---QIESLIGHLDHLASGSRVIITTRDKQVLKNC---WAGQIYQMK- 296 (808)
Q Consensus 231 --~~~~~l~~~L~--~~~~LlVlDdv~---~~~---~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~---~~~~~~~l~- 296 (808)
..+..+...+. .++..+||||.. ++. .++.+... ..++-..|+|||...-..-. -.+...+++
T Consensus 113 l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~ 189 (894)
T COG2909 113 LESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENLTLVVTSRSRPQLGLARLRLRDELLEIGS 189 (894)
T ss_pred HHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCeEEEEEeccCCCCcccceeehhhHHhcCh
Confidence 23344444443 368999999964 332 34444444 45688899999998543221 112334444
Q ss_pred ---CCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhhcC-CCHHHHHHHHhhhhcCcchhHHH-
Q 041551 297 ---ELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYLCG-RSKEEWESAMRKLEIIPHVEIQE- 371 (808)
Q Consensus 297 ---~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~-~~~~~w~~~l~~l~~~~~~~i~~- 371 (808)
.|+.+|+.++|.... ..+-....++.+.+..+|.+-|+..++=.+++ .+.+.-...+.. . .+-+.+
T Consensus 190 ~~Lrf~~eE~~~fl~~~~-----~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG---~-~~~l~dY 260 (894)
T COG2909 190 EELRFDTEEAAAFLNDRG-----SLPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG---A-ASHLSDY 260 (894)
T ss_pred HhhcCChHHHHHHHHHcC-----CCCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc---h-HHHHHHH
Confidence 689999999998765 13334456789999999999999999988873 333322222211 1 111211
Q ss_pred HHHHhhcCCcHHHHHHHhhhhhccCCcchhHHHHHHhhcCCcchhhhhhhhcccceee--e-cCCeEEecHHHHHHHHHH
Q 041551 372 VLKISYDSLDDSQKNIFLDIACFLEGEHRDKVISFFDASGLEAKIELSVLEGKSLINL--D-VFDQIRMHDLLRDMGREI 448 (808)
Q Consensus 372 ~l~~sy~~L~~~~k~~fl~la~fp~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~--~-~~~~~~mHdlv~~~~~~i 448 (808)
...--++.||++.|..++-+|+++.-. +.+.......+ ....-++.|.+++|+-. + .++.|+.|.++.+|.+..
T Consensus 261 L~eeVld~Lp~~l~~FLl~~svl~~f~--~eL~~~Ltg~~-ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r 337 (894)
T COG2909 261 LVEEVLDRLPPELRDFLLQTSVLSRFN--DELCNALTGEE-NGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQR 337 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhHHHhh--HHHHHHHhcCC-cHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhh
Confidence 223346899999999999999985321 22332222211 12334889999998752 2 256799999999999988
Q ss_pred HhhcC
Q 041551 449 VRNES 453 (808)
Q Consensus 449 ~~~e~ 453 (808)
.+.+.
T Consensus 338 ~~~~~ 342 (894)
T COG2909 338 LQREL 342 (894)
T ss_pred hcccc
Confidence 87753
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.03 E-value=5.5e-11 Score=128.08 Aligned_cols=233 Identities=17% Similarity=0.133 Sum_probs=137.2
Q ss_pred ccCcccceEeecCCCCcc-----cccchhhcccccceeccCCCCCCC------CCCC-CCCCCCCcEEecCCCCCCcccc
Q 041551 506 NICAEKLVSLKMPRSKVQ-----QLWDDVQDLVNLKEIDLSRSESLT------KLPD-LSRAKNLEILWLRGCLSLVETH 573 (808)
Q Consensus 506 ~~~~~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~L~~n~~~~------~~p~-~~~l~~L~~L~L~~n~~l~~~p 573 (808)
+....+|+.|+++++.++ .++..+...++|+.|+++++.... .++. +..+++|+.|++++|......+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 334556888888888874 345556677778888888875442 1122 5567788888888876554455
Q ss_pred ccccCCCC---cCEEecCCCCCCC----cCCCcC-CC-CCCCEEeccCCCCCC----cccccccc--cccEEEecccCCe
Q 041551 574 STIQYLNK---LEDLDLDYCISLT----SLPTSI-HS-KHLKELSLRGCSNLK----IFPEITSC--HMWRLELTKVGIK 638 (808)
Q Consensus 574 ~~~~~l~~---L~~L~l~~~~~l~----~lp~~~-~l-~~L~~L~L~~~~~l~----~~p~~~~~--~L~~L~L~~n~i~ 638 (808)
..+..+.+ |++|++++|.... .+...+ .+ ++|+.|++++|.... .++..... .|++|++++|.++
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 55544444 8888888865321 111112 34 678888888885432 12222222 3888888888776
Q ss_pred -----ecCcccccCCcCcEEEeecCCCcc----cccccccCCCCCCEEEeecCCCCc-cccCCCCCcC-CCCceeeecCC
Q 041551 639 -----ELPSSIECLSNLQYLYIWDCSELE----SISSSIFKLNSLESIDISNCSNLK-RFLEIPSCNI-DGGFAFCIVVP 707 (808)
Q Consensus 639 -----~lp~~~~~l~~L~~L~L~~n~~l~----~lp~~~~~l~~L~~L~l~~c~~l~-~lp~~~~~~~-~~~~~~~l~l~ 707 (808)
.++..+..+++|+.|++++|.+.. .++..+..+++|++|++++|+.-. .+..+..... ....+..+.+.
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~ 258 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence 244445566788888888887632 234446667888888888875221 0101100000 11234556677
Q ss_pred CCCCCCc----ccccccCCCcccccccccccccce
Q 041551 708 HCWEPCE----THEVFCGLKHKSQRNLDRRSLGRI 738 (808)
Q Consensus 708 ~~~~~~~----~~~~f~~l~~l~~~~l~~n~~~~~ 738 (808)
+|.+... ....+..++.+..+++++|.+...
T Consensus 259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 7766521 112344457778888888877644
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=5.1e-10 Score=124.27 Aligned_cols=191 Identities=29% Similarity=0.356 Sum_probs=148.1
Q ss_pred EEEecCCCC-CCc--ccCcccceEeecCCCCcccccchhhccc-ccceeccCCCCCCCCCC-CCCCCCCCcEEecCCCCC
Q 041551 494 HLEWARCPL-KTL--NICAEKLVSLKMPRSKVQQLWDDVQDLV-NLKEIDLSRSESLTKLP-DLSRAKNLEILWLRGCLS 568 (808)
Q Consensus 494 ~L~l~~~~l-~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~l~-~L~~L~L~~n~~~~~~p-~~~~l~~L~~L~L~~n~~ 568 (808)
.+....+.+ ... ....+.+..|++.+|.+.++++....+. +|+.|++++|. +..+| .+..+++|+.|++++| .
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-D 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc-h
Confidence 466666665 333 3344678999999999999988888885 99999999996 45554 5889999999999998 5
Q ss_pred CccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccccccccc-ccEEEecccCCeecCccccc
Q 041551 569 LVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCH-MWRLELTKVGIKELPSSIEC 646 (808)
Q Consensus 569 l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~-L~~L~L~~n~i~~lp~~~~~ 646 (808)
+..+|...+.++.|+.|++++ +.+..+|... .+..|++|.+++|..+..+....... +..|.+.+|.+..+|..++.
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 253 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcc
Confidence 667887777899999999999 5789999876 44559999999985443333222222 66777888999888888999
Q ss_pred CCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCcccc
Q 041551 647 LSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFL 689 (808)
Q Consensus 647 l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp 689 (808)
+++|+.|++++|.+ ..++. ++.+.+|+.|+++++.....+|
T Consensus 254 l~~l~~L~~s~n~i-~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 254 LSNLETLDLSNNQI-SSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccceeccccccc-ccccc-ccccCccCEEeccCccccccch
Confidence 99999999988877 66666 8889999999999986544333
No 35
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.96 E-value=7.6e-10 Score=115.53 Aligned_cols=281 Identities=18% Similarity=0.178 Sum_probs=190.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.|.+.++|.|||||||++-++.+ +...|...+|+.+....+.+..+..+....+... .......+..+..+..+++.+
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~-~~~g~~~~~~~~~~~~~rr~l 91 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLH-VQPGDSAVDTLVRRIGDRRAL 91 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccc-cccchHHHHHHHHHHhhhhHH
Confidence 67799999999999999999999 8888998888776665554433333332221111 111123556777788899999
Q ss_pred EEEecCCCHH-HHHHHHhccCCCCCCCEEEEEeCchhhhhhcCCCeEEEecCCChh-hHHHHHHHHhhcCCC---CCchH
Q 041551 247 LVFDDVNNPR-QIESLIGHLDHLASGSRVIITTRDKQVLKNCWAGQIYQMKELVYT-DAQKLFSQYAFRGGH---LDSSY 321 (808)
Q Consensus 247 lVlDdv~~~~-~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~~~~~~~---~~~~~ 321 (808)
+|+||..... +...+...+....+.-.|+.|+|..-. ...+..+.++.|+.. ++.++|...+..... .....
T Consensus 92 lvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~ 168 (414)
T COG3903 92 LVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDN 168 (414)
T ss_pred HHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceeecCCc
Confidence 9999986643 334444444444566778999997643 345678889998866 799999887743222 23345
Q ss_pred HHHHHHHHHHhcCchhhHHHHhhhhcCCCHHHHHHHHhh----hhcC------cchhHHHHHHHhhcCCcHHHHHHHhhh
Q 041551 322 TELTDKAIKYAQGVPLALKVLGCYLCGRSKEEWESAMRK----LEII------PHVEIQEVLKISYDSLDDSQKNIFLDI 391 (808)
Q Consensus 322 ~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~sy~~L~~~~k~~fl~l 391 (808)
...+.+|.+..+|.|++|..+++..+.....+....+.. +... ........+..||.-|..-++..|..+
T Consensus 169 ~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rL 248 (414)
T COG3903 169 AAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGRL 248 (414)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcch
Confidence 567789999999999999999999987655544433332 2222 223466789999999999999999999
Q ss_pred hhccCCcchhHHHHH-Hhh----cCCcchhhhhhhhcccceeeec---CCeEEecHHHHHHHHHHHhhc
Q 041551 392 ACFLEGEHRDKVISF-FDA----SGLEAKIELSVLEGKSLINLDV---FDQIRMHDLLRDMGREIVRNE 452 (808)
Q Consensus 392 a~fp~~~~~~~l~~~-~~~----~g~~~~~~l~~L~~~sLi~~~~---~~~~~mHdlv~~~~~~i~~~e 452 (808)
+.|..++..+..... ..+ ..+.....+..+++++++.... .-.|+.-+-++.|+.+...+.
T Consensus 249 a~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 249 AVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred hhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 999988876522111 111 1222334477889999886443 223667777777777666554
No 36
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.93 E-value=7.6e-08 Score=100.81 Aligned_cols=174 Identities=18% Similarity=0.141 Sum_probs=103.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCccc----ccHHHHHHHH--
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRIL----RDVRSQLNRL-- 240 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~----~~~~~l~~~L-- 240 (808)
...+.|+|.+|+|||||++.+++.....=-..+++.. ...+..++...+...+...... .....+.+.+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999876522111223221 1233445555555444221111 2223333222
Q ss_pred ---ccceEEEEEecCCCH--HHHHHHHhccC---CCCCCCEEEEEeCchhhhhhc----------CCCeEEEecCCChhh
Q 041551 241 ---ARKMVLLVFDDVNNP--RQIESLIGHLD---HLASGSRVIITTRDKQVLKNC----------WAGQIYQMKELVYTD 302 (808)
Q Consensus 241 ---~~~~~LlVlDdv~~~--~~~~~l~~~l~---~~~~gs~IiiTTR~~~v~~~~----------~~~~~~~l~~L~~~e 302 (808)
.+++.++|+||++.. ..++.+..... .......|++|.... ..... .....+.+++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 567899999999864 34554432211 112223445555432 21111 113467899999999
Q ss_pred HHHHHHHHhhcCCC--CCchHHHHHHHHHHHhcCchhhHHHHhhhh
Q 041551 303 AQKLFSQYAFRGGH--LDSSYTELTDKAIKYAQGVPLALKVLGCYL 346 (808)
Q Consensus 303 a~~Lf~~~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~L 346 (808)
..+++...+..... ...-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999877643221 223345788999999999999999888776
No 37
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.90 E-value=2.9e-08 Score=106.02 Aligned_cols=244 Identities=16% Similarity=0.114 Sum_probs=133.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCc-----c-----cccHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDR-----I-----LRDVRSQ 236 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~-----~-----~~~~~~l 236 (808)
...+.++|++|+|||+||+.++++....+. ... .........+.... ..+.... + ....+.+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~-~~~~~~~~~l~~~l----~~~~~~~vl~iDEi~~l~~~~~e~l 101 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS-GPALEKPGDLAAIL----TNLEEGDVLFIDEIHRLSPAVEELL 101 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-cchhcCchhHHHHH----HhcccCCEEEEehHhhhCHHHHHHh
Confidence 456789999999999999999997654321 111 10001111111111 1111000 0 0111222
Q ss_pred HHHHccceEEEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhhhhhc--CCCeEEEecCCChhhHHHHHHHHhhcC
Q 041551 237 LNRLARKMVLLVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQVLKNC--WAGQIYQMKELVYTDAQKLFSQYAFRG 314 (808)
Q Consensus 237 ~~~L~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 314 (808)
...+.+.+..+|+|+..+..++... ..+.+-|..||+...+.... .....+.+++++.+|..+++.+.+...
T Consensus 102 ~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~ 175 (305)
T TIGR00635 102 YPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL 175 (305)
T ss_pred hHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh
Confidence 2233333344444443333322111 12345566677765443321 123578999999999999999887432
Q ss_pred CCCCchHHHHHHHHHHHhcCchhhHHHHhhhhcCCCHHHHHHHH-hhhhcCcc---hhHHHHHHHhhcCCcHHHHHHHh-
Q 041551 315 GHLDSSYTELTDKAIKYAQGVPLALKVLGCYLCGRSKEEWESAM-RKLEIIPH---VEIQEVLKISYDSLDDSQKNIFL- 389 (808)
Q Consensus 315 ~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~w~~~l-~~l~~~~~---~~i~~~l~~sy~~L~~~~k~~fl- 389 (808)
...-..+.+..|++.|+|.|-.+..++..+ |.... ..-..... ......+...|..++++.+..+.
T Consensus 176 --~~~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~a 246 (305)
T TIGR00635 176 --NVEIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSV 246 (305)
T ss_pred --CCCcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 223345677899999999997665555432 11110 00000111 11222255678889998888777
Q ss_pred hhhhccCC-cchhHHHHHHhhcCCcchhhhh-hhhcccceeeecCC
Q 041551 390 DIACFLEG-EHRDKVISFFDASGLEAKIELS-VLEGKSLINLDVFD 433 (808)
Q Consensus 390 ~la~fp~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~~~~ 433 (808)
.++.+..+ ...+.+...+.......+..++ .|++++||+....+
T Consensus 247 l~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 292 (305)
T TIGR00635 247 LIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRG 292 (305)
T ss_pred HHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCch
Confidence 44666543 4567777777776666666677 69999999755443
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=2.3e-10 Score=112.84 Aligned_cols=193 Identities=19% Similarity=0.201 Sum_probs=123.3
Q ss_pred CCceeEEEecCCCCCCc---ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCC-CCC---CCCCCCCCcEE
Q 041551 489 FAEVRHLEWARCPLKTL---NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLT-KLP---DLSRAKNLEIL 561 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~-~~p---~~~~l~~L~~L 561 (808)
+.+|..+.++.|.-+.+ ...-+.|..+...++.+...|.-+ ....+ -|.....-.. .-| .+.-.+.|++|
T Consensus 213 f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~-pe~~~--~D~~~~E~~t~~G~~~~~~dTWq~Ltel 289 (490)
T KOG1259|consen 213 FRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLL-PETIL--ADPSGSEPSTSNGSALVSADTWQELTEL 289 (490)
T ss_pred hhhhheeeeeccchhheeceeecCchhheeeeeccccccccccc-chhhh--cCccCCCCCccCCceEEecchHhhhhhc
Confidence 67777777777764444 333345666666665554332211 11111 1222211111 011 13345678888
Q ss_pred ecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccc--cccEEEecccCCee
Q 041551 562 WLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSC--HMWRLELTKVGIKE 639 (808)
Q Consensus 562 ~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~~ 639 (808)
+|++| .+..+..++.-+++++.|++++| .+..+.....+++|+.||||+|. +..+...... .++.|.|++|.|..
T Consensus 290 DLS~N-~I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N~iE~ 366 (490)
T KOG1259|consen 290 DLSGN-LITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQNKIET 366 (490)
T ss_pred ccccc-chhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhhhHhh
Confidence 88887 66677788888888888888884 56666654477888888888873 3333222221 27889999999888
Q ss_pred cCcccccCCcCcEEEeecCCCccccc--ccccCCCCCCEEEeecCCCCccccC
Q 041551 640 LPSSIECLSNLQYLYIWDCSELESIS--SSIFKLNSLESIDISNCSNLKRFLE 690 (808)
Q Consensus 640 lp~~~~~l~~L~~L~L~~n~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~lp~ 690 (808)
+ ++++.|-+|..||+++|++ ..+. ..|++||.|+.|.+.+|| +..+|+
T Consensus 367 L-SGL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NP-l~~~vd 416 (490)
T KOG1259|consen 367 L-SGLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNP-LAGSVD 416 (490)
T ss_pred h-hhhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCC-ccccch
Confidence 7 4688899999999999987 4442 358999999999999987 444444
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=6.5e-10 Score=115.52 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=42.7
Q ss_pred CceeEEEecCCCCCCc-----ccCcccceEeecCCCCcccc---cchhhcccccceeccCCCCCCCCCCC--CCCCCCCc
Q 041551 490 AEVRHLEWARCPLKTL-----NICAEKLVSLKMPRSKVQQL---WDDVQDLVNLKEIDLSRSESLTKLPD--LSRAKNLE 559 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l-----~~~~~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~ 559 (808)
.+|+...+.+++.... ...+.+++.|+|++|-+... -.-...|++|+.|+|+.|.+.....+ -..+++|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 3444444444443333 12344455555555544322 11234455555555555543322221 22345555
Q ss_pred EEecCCCCCCcc-ccccccCCCCcCEEecCCC
Q 041551 560 ILWLRGCLSLVE-THSTIQYLNKLEDLDLDYC 590 (808)
Q Consensus 560 ~L~L~~n~~l~~-~p~~~~~l~~L~~L~l~~~ 590 (808)
.|.|++|..... +-.....+++|+.|+|.+|
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 555555532211 1112234455555555554
No 40
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.83 E-value=4.4e-07 Score=100.71 Aligned_cols=252 Identities=17% Similarity=0.139 Sum_probs=143.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccC--ceEEEecchhhhhccCHHHHHHHHHhhHhcCcc-------cccHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFE--GSYFAQNVREAEETGGIKDLQKELLSDVLNDRI-------LRDVRSQL 237 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~--~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-------~~~~~~l~ 237 (808)
...+.|+|++|+|||++++.++++.....+ ..+++... .......+...++.++.+... .+....+.
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~----~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 130 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ----IDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIA 130 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC----cCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence 345789999999999999999998765542 23444422 223445566666666544211 13445555
Q ss_pred HHHc--cceEEEEEecCCCHH------HHHHHHhccCCCCCCCE--EEEEeCchhhhhhcC-------CCeEEEecCCCh
Q 041551 238 NRLA--RKMVLLVFDDVNNPR------QIESLIGHLDHLASGSR--VIITTRDKQVLKNCW-------AGQIYQMKELVY 300 (808)
Q Consensus 238 ~~L~--~~~~LlVlDdv~~~~------~~~~l~~~l~~~~~gs~--IiiTTR~~~v~~~~~-------~~~~~~l~~L~~ 300 (808)
+.+. +++.+||||+++... .+..+...... ..+++ +|.++...++..... ....+.+++++.
T Consensus 131 ~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~ 209 (394)
T PRK00411 131 EYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTA 209 (394)
T ss_pred HHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCH
Confidence 5554 456899999998643 34444433222 12333 566666554433211 124678999999
Q ss_pred hhHHHHHHHHhhcCCCCCchHHHHHHHHHHHh----cCchhhHHHHhhhh-----cC---CCHHHHHHHHhhhhcCcchh
Q 041551 301 TDAQKLFSQYAFRGGHLDSSYTELTDKAIKYA----QGVPLALKVLGCYL-----CG---RSKEEWESAMRKLEIIPHVE 368 (808)
Q Consensus 301 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~----~glPLal~~~~~~L-----~~---~~~~~w~~~l~~l~~~~~~~ 368 (808)
++..+++..++-.......-..+..+.+++.+ |..+.|+.++-... ++ -+.+....+.++..
T Consensus 210 ~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~------ 283 (394)
T PRK00411 210 DEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE------ 283 (394)
T ss_pred HHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH------
Confidence 99999998876322111111223344444444 55777777654322 11 14556666665541
Q ss_pred HHHHHHHhhcCCcHHHHHHHhhhhhccC----CcchhHHHH----HHhhcCCcc------hhhhhhhhcccceeee
Q 041551 369 IQEVLKISYDSLDDSQKNIFLDIACFLE----GEHRDKVIS----FFDASGLEA------KIELSVLEGKSLINLD 430 (808)
Q Consensus 369 i~~~l~~sy~~L~~~~k~~fl~la~fp~----~~~~~~l~~----~~~~~g~~~------~~~l~~L~~~sLi~~~ 430 (808)
.....-.+..||.++|.++..++.... ......+.. +....|..+ ...++.|...++|...
T Consensus 284 -~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 284 -IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred -HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 123445678999999998887775432 222222221 111223321 2358889999999754
No 41
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.82 E-value=5.3e-08 Score=104.70 Aligned_cols=233 Identities=16% Similarity=0.166 Sum_probs=133.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+.+.|+|++|+|||+||+.+++.....+. +... ........+. .++. .+ +..-+
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~~-~~~~~~~~l~----~~l~----------------~l-~~~~v 105 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITSG-PALEKPGDLA----AILT----------------NL-EEGDV 105 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEec-ccccChHHHH----HHHH----------------hc-ccCCE
Confidence 456889999999999999999998754321 1110 0000001111 1111 11 12345
Q ss_pred EEEecCCCHH--HHHHHHhccC-------------------CCCCCCEEEEEeCchhhhhhc--CCCeEEEecCCChhhH
Q 041551 247 LVFDDVNNPR--QIESLIGHLD-------------------HLASGSRVIITTRDKQVLKNC--WAGQIYQMKELVYTDA 303 (808)
Q Consensus 247 lVlDdv~~~~--~~~~l~~~l~-------------------~~~~gs~IiiTTR~~~v~~~~--~~~~~~~l~~L~~~ea 303 (808)
|++|+++... ..+.+...+. ...+.+-|..|||...+.... .....+++++++.++.
T Consensus 106 l~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~ 185 (328)
T PRK00080 106 LFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEEL 185 (328)
T ss_pred EEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHH
Confidence 6666665321 1111111110 012244566677755443221 1235689999999999
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhhcCCCHHHHHHHHhhhhcCcc---hhHHHHHHHhhcCC
Q 041551 304 QKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIIPH---VEIQEVLKISYDSL 380 (808)
Q Consensus 304 ~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~w~~~l~~l~~~~~---~~i~~~l~~sy~~L 380 (808)
.+++.+.+... ...-..+.+..|++.|+|.|-.+..+...+ ..|...... ..... ......+...+..|
T Consensus 186 ~~il~~~~~~~--~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~~-~~I~~~~v~~~l~~~~~~~~~l 257 (328)
T PRK00080 186 EKIVKRSARIL--GVEIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKGD-GVITKEIADKALDMLGVDELGL 257 (328)
T ss_pred HHHHHHHHHHc--CCCcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcCC-CCCCHHHHHHHHHHhCCCcCCC
Confidence 99999887432 233445678999999999996555444432 122211100 01111 12334456677889
Q ss_pred cHHHHHHHh-hhhhccCC-cchhHHHHHHhhcCCcchhhhh-hhhcccceeeecC
Q 041551 381 DDSQKNIFL-DIACFLEG-EHRDKVISFFDASGLEAKIELS-VLEGKSLINLDVF 432 (808)
Q Consensus 381 ~~~~k~~fl-~la~fp~~-~~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~~~ 432 (808)
++..+..+. .+..|..+ ...+.+...+..+....+..++ .|++.+||+....
T Consensus 258 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~ 312 (328)
T PRK00080 258 DEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPR 312 (328)
T ss_pred CHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCc
Confidence 988888886 66666654 3567777777766666666677 8999999975433
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.80 E-value=4.3e-09 Score=116.85 Aligned_cols=176 Identities=26% Similarity=0.337 Sum_probs=141.6
Q ss_pred CCceeEEEecCCCCCCc---ccCcc-cceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEec
Q 041551 489 FAEVRHLEWARCPLKTL---NICAE-KLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWL 563 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l---~~~~~-~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L 563 (808)
.+.+..|++.++++..+ ..... +|+.|++++|.+..+|..+..+++|+.|++++|+ +..+|. .+.+++|+.|++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheec
Confidence 46799999999998888 34443 8999999999999999889999999999999997 555665 559999999999
Q ss_pred CCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCccccccccc--ccEEEecccCCeecC
Q 041551 564 RGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIKELP 641 (808)
Q Consensus 564 ~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~~lp 641 (808)
++| .+..+|..+..+..|+.|.+++|..+..+.....++++..|.+.+|. +..++...... ++.|++++|.++.++
T Consensus 194 s~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L~~s~n~i~~i~ 271 (394)
T COG4886 194 SGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETLDLSNNQISSIS 271 (394)
T ss_pred cCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccchhccccccceeccccccccccc
Confidence 998 67788887777888999999996534433333378888888877774 33334433332 999999999999998
Q ss_pred cccccCCcCcEEEeecCCCcccccccc
Q 041551 642 SSIECLSNLQYLYIWDCSELESISSSI 668 (808)
Q Consensus 642 ~~~~~l~~L~~L~L~~n~~l~~lp~~~ 668 (808)
. ++.+.+|+.|++++|.....+|...
T Consensus 272 ~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 272 S-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred c-ccccCccCEEeccCccccccchhhh
Confidence 8 9999999999999999876666543
No 43
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.73 E-value=6.4e-08 Score=98.93 Aligned_cols=172 Identities=16% Similarity=0.207 Sum_probs=88.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHH----------HHHHHhhHhcC---------
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDL----------QKELLSDVLND--------- 227 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l----------~~~ll~~~~~~--------- 227 (808)
.+.+.|+|+.|+|||+|++++.+.....-...+|+........ .....+ .+.+...+...
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADELSEALGISIPSITLEKISKDL 98 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence 4678999999999999999999977443334444443221111 011111 11121111111
Q ss_pred --cccccHHHHHHHHc--cceEEEEEecCCCHH-----------HHHHHHhccCCCCCCCEEEEEeCchhhhhh------
Q 041551 228 --RILRDVRSQLNRLA--RKMVLLVFDDVNNPR-----------QIESLIGHLDHLASGSRVIITTRDKQVLKN------ 286 (808)
Q Consensus 228 --~~~~~~~~l~~~L~--~~~~LlVlDdv~~~~-----------~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~------ 286 (808)
.....+..+.+.+. +++++||+||++... .+..+........ ...+++++....+...
T Consensus 99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~v~~~S~~~~~~~~~~~~~ 177 (234)
T PF01637_consen 99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ-NVSIVITGSSDSLMEEFLDDKS 177 (234)
T ss_dssp -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T-TEEEEEEESSHHHHHHTT-TTS
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC-CceEEEECCchHHHHHhhcccC
Confidence 11144555555554 356999999986544 1223333322223 3344455544444433
Q ss_pred --cCCCeEEEecCCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHH
Q 041551 287 --CWAGQIYQMKELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKV 341 (808)
Q Consensus 287 --~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 341 (808)
.+....+.+++|+.+++++++...+-.. ..-+...+..++|...+||+|..|..
T Consensus 178 ~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 178 PLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 1223459999999999999999876332 11123456679999999999988764
No 44
>PRK06893 DNA replication initiation factor; Validated
Probab=98.70 E-value=1.9e-07 Score=94.74 Aligned_cols=151 Identities=17% Similarity=0.234 Sum_probs=94.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+.+.|+|.+|+|||+||+++++....+...+.|+..... ..... .+.+.+. +.-+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~-------~~~~~----------------~~~~~~~-~~dl 94 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS-------QYFSP----------------AVLENLE-QQDL 94 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh-------hhhhH----------------HHHhhcc-cCCE
Confidence 3568899999999999999999987666667777763110 00000 1111222 2358
Q ss_pred EEEecCCCH---HHHH-HHHhccCCC-CCCCEEEEE-eCc---------hhhhhhcCCCeEEEecCCChhhHHHHHHHHh
Q 041551 247 LVFDDVNNP---RQIE-SLIGHLDHL-ASGSRVIIT-TRD---------KQVLKNCWAGQIYQMKELVYTDAQKLFSQYA 311 (808)
Q Consensus 247 lVlDdv~~~---~~~~-~l~~~l~~~-~~gs~IiiT-TR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 311 (808)
|||||++.. .+|+ .+...+... ..|+.+||+ ++. +++...+....+++++++++++.++++.+.+
T Consensus 95 LilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a 174 (229)
T PRK06893 95 VCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNA 174 (229)
T ss_pred EEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHH
Confidence 999999863 3333 222222211 235566554 443 3455555556789999999999999999988
Q ss_pred hcCCCCCchHHHHHHHHHHHhcCchhhHHHHh
Q 041551 312 FRGGHLDSSYTELTDKAIKYAQGVPLALKVLG 343 (808)
Q Consensus 312 ~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 343 (808)
.... ..-.++..+-|++.+.|-.-++..+-
T Consensus 175 ~~~~--l~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 175 YQRG--IELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHcC--CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 6433 23345667788888887665554433
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.65 E-value=1.5e-08 Score=96.58 Aligned_cols=100 Identities=25% Similarity=0.324 Sum_probs=26.2
Q ss_pred ccceEeecCCCCcccccchhh-cccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccc-cCCCCcCEEec
Q 041551 510 EKLVSLKMPRSKVQQLWDDVQ-DLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTI-QYLNKLEDLDL 587 (808)
Q Consensus 510 ~~L~~L~L~~n~l~~l~~~~~-~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~-~~l~~L~~L~l 587 (808)
.++++|+|++|.|+.+. .++ .+.+|+.|+|++|. +..++++..+++|++|++++| .+..+++.+ ..+++|+.|++
T Consensus 19 ~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCC-CCCccccchHHhCCcCCEEEC
Confidence 34555666666666552 343 45666666666664 444555666666666666666 333443333 34666666666
Q ss_pred CCCCCCCcCCCcC---CCCCCCEEeccCC
Q 041551 588 DYCISLTSLPTSI---HSKHLKELSLRGC 613 (808)
Q Consensus 588 ~~~~~l~~lp~~~---~l~~L~~L~L~~~ 613 (808)
++| .+..+.... .+++|+.|+|.+|
T Consensus 96 ~~N-~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 96 SNN-KISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-
T ss_pred cCC-cCCChHHhHHHHcCCCcceeeccCC
Confidence 663 344443311 3455555555554
No 46
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=2.2e-08 Score=95.56 Aligned_cols=135 Identities=24% Similarity=0.363 Sum_probs=42.5
Q ss_pred CCcccccchhhcccccceeccCCCCCCCCCCCCC-CCCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCC
Q 041551 520 SKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLS-RAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPT 598 (808)
Q Consensus 520 n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~ 598 (808)
+.|+..+ .+.+..+++.|+|++|.+ ..+..++ .+.+|+.|+|++| .+..++ .+..+++|+.|++++| .+++++.
T Consensus 7 ~~i~~~~-~~~n~~~~~~L~L~~n~I-~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~ 81 (175)
T PF14580_consen 7 NMIEQIA-QYNNPVKLRELNLRGNQI-STIENLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNN-RISSISE 81 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CH
T ss_pred ccccccc-cccccccccccccccccc-ccccchhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCC-CCCcccc
Confidence 3344443 233445667777777753 3344444 4666777777776 333442 4556666666666663 4555543
Q ss_pred cC--CCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecC--cccccCCcCcEEEeecCCCcccccc----cccC
Q 041551 599 SI--HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELP--SSIECLSNLQYLYIWDCSELESISS----SIFK 670 (808)
Q Consensus 599 ~~--~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp--~~~~~l~~L~~L~L~~n~~l~~lp~----~~~~ 670 (808)
.+ .+++|++|++++| .|..+. ..+..+++|+.|+|.+|+... .+. .+..
T Consensus 82 ~l~~~lp~L~~L~L~~N----------------------~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~ 138 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNN----------------------KISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYK 138 (175)
T ss_dssp HHHHH-TT--EEE-TTS-------------------------SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH
T ss_pred chHHhCCcCCEEECcCC----------------------cCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHH
Confidence 32 3555666555554 444332 236778999999999998743 232 3667
Q ss_pred CCCCCEEEeecC
Q 041551 671 LNSLESIDISNC 682 (808)
Q Consensus 671 l~~L~~L~l~~c 682 (808)
+|+|+.||-...
T Consensus 139 lP~Lk~LD~~~V 150 (175)
T PF14580_consen 139 LPSLKVLDGQDV 150 (175)
T ss_dssp -TT-SEETTEET
T ss_pred cChhheeCCEEc
Confidence 888998886654
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.7e-09 Score=108.62 Aligned_cols=172 Identities=20% Similarity=0.202 Sum_probs=122.9
Q ss_pred CCceeEEEecCCCCCCc------ccCcccceEeecCCCCcccccch--hhcccccceeccCCCCCCCCCC-C-CCCCCCC
Q 041551 489 FAEVRHLEWARCPLKTL------NICAEKLVSLKMPRSKVQQLWDD--VQDLVNLKEIDLSRSESLTKLP-D-LSRAKNL 558 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l------~~~~~~L~~L~L~~n~l~~l~~~--~~~l~~L~~L~L~~n~~~~~~p-~-~~~l~~L 558 (808)
+++++.|++++|-+... ...+++|+.|+|+.|.+...+.+ -..+++|+.|.|+.|.+...-- . ...+|+|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 78999999999876655 55789999999999998866554 3468899999999997653211 1 5678999
Q ss_pred cEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCc---CCCCCCCEEeccCCCCCC-ccccc-------ccccc
Q 041551 559 EILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTS---IHSKHLKELSLRGCSNLK-IFPEI-------TSCHM 627 (808)
Q Consensus 559 ~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~---~~l~~L~~L~L~~~~~l~-~~p~~-------~~~~L 627 (808)
+.|+|.+|.....-......+..|+.|||++|+ +.+++.. ..++.|..|+++.|..-+ .+|+. ....|
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 999999986444433445668899999999965 5555532 277889999998874322 11221 11128
Q ss_pred cEEEecccCCeecCc--ccccCCcCcEEEeecCCCc
Q 041551 628 WRLELTKVGIKELPS--SIECLSNLQYLYIWDCSEL 661 (808)
Q Consensus 628 ~~L~L~~n~i~~lp~--~~~~l~~L~~L~L~~n~~l 661 (808)
+.|+++.|+|.+.++ .+..+++|+.|.+..|.+.
T Consensus 304 ~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 304 EYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred eeeecccCccccccccchhhccchhhhhhccccccc
Confidence 888888888876654 3566777788877666653
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=6.5e-09 Score=102.75 Aligned_cols=127 Identities=21% Similarity=0.235 Sum_probs=71.7
Q ss_pred ccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCC
Q 041551 510 EKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDY 589 (808)
Q Consensus 510 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~ 589 (808)
+.|++|||++|.|+.+-++++-++.++.|++|+|.+ ..+.++..+++|+.|+|++| .+..+...-..|-+.+.|.|++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i-~~v~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI-RTVQNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccce-eeehhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhh
Confidence 345566666666666655566666666666666642 23333555556666666655 2223222223344444555554
Q ss_pred CCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecC--cccccCCcCcEEEeecCCCc
Q 041551 590 CISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELP--SSIECLSNLQYLYIWDCSEL 661 (808)
Q Consensus 590 ~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp--~~~~~l~~L~~L~L~~n~~l 661 (808)
| .++++...-.+-+ |..|++++|+|..+. .+|++||.|+.|.|.+|++.
T Consensus 362 N-~iE~LSGL~KLYS----------------------LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 362 N-KIETLSGLRKLYS----------------------LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred h-hHhhhhhhHhhhh----------------------heeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 2 3333322222223 555666667777653 46999999999999999973
No 49
>PLN03150 hypothetical protein; Provisional
Probab=98.57 E-value=1.3e-07 Score=110.28 Aligned_cols=106 Identities=19% Similarity=0.201 Sum_probs=88.4
Q ss_pred cceEeecCCCCcc-cccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCccccccccCCCCcCEEecC
Q 041551 511 KLVSLKMPRSKVQ-QLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLD 588 (808)
Q Consensus 511 ~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~ 588 (808)
.++.|+|++|.+. .+|..+..+++|+.|+|++|.+.+.+|. ++.+++|+.|+|++|...+.+|..+++|++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778899999887 6788899999999999999988888885 8999999999999998888899999999999999999
Q ss_pred CCCCCCcCCCcC-C-CCCCCEEeccCCCCC
Q 041551 589 YCISLTSLPTSI-H-SKHLKELSLRGCSNL 616 (808)
Q Consensus 589 ~~~~l~~lp~~~-~-l~~L~~L~L~~~~~l 616 (808)
+|...+.+|..+ . +.++..+++.+|..+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 988777888766 2 245667777777543
No 50
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.56 E-value=4.7e-07 Score=94.28 Aligned_cols=146 Identities=25% Similarity=0.400 Sum_probs=92.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHH-HHHHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQ-LNRLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l-~~~L~~~~~ 245 (808)
+....+||++|+||||||+.++......|...-=+ ..+++++..-+ +.- .....+++.
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkdlr~i~-------------e~a~~~~~~gr~t 106 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKDLREII-------------EEARKNRLLGRRT 106 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHHHHHHH-------------HHHHHHHhcCCce
Confidence 55677999999999999999998776665432111 12233332211 111 223358899
Q ss_pred EEEEecCCC--HHHHHHHHhccCCCCCCCEEEE--EeCchhhhhh---cCCCeEEEecCCChhhHHHHHHHHhhcCCCC-
Q 041551 246 LLVFDDVNN--PRQIESLIGHLDHLASGSRVII--TTRDKQVLKN---CWAGQIYQMKELVYTDAQKLFSQYAFRGGHL- 317 (808)
Q Consensus 246 LlVlDdv~~--~~~~~~l~~~l~~~~~gs~Iii--TTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~- 317 (808)
+|++|.|.. ..|-+.|++.. ..|.-|+| ||-++...-. .....++.+++|+.+|-.+++.+-+......
T Consensus 107 iLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl 183 (436)
T COG2256 107 ILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGL 183 (436)
T ss_pred EEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCC
Confidence 999999974 55667776654 45777777 6666643111 1234799999999999999998843221111
Q ss_pred ----CchHHHHHHHHHHHhcCch
Q 041551 318 ----DSSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 318 ----~~~~~~~~~~i~~~~~glP 336 (808)
..-.++..+.+++.++|--
T Consensus 184 ~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 184 GGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred CcccccCCHHHHHHHHHhcCchH
Confidence 1123456677888888754
No 51
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.53 E-value=8.8e-06 Score=89.32 Aligned_cols=217 Identities=18% Similarity=0.211 Sum_probs=119.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccC------ceEEEecchhhhhccCHHHHHHHHHhhHh--cCc-------ccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFE------GSYFAQNVREAEETGGIKDLQKELLSDVL--NDR-------ILR 231 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~------~~~~~~~~~~~~~~~~~~~l~~~ll~~~~--~~~-------~~~ 231 (808)
...+.|+|++|+|||++++.+++++....+ ..+|+... .......+...++.++. +.. ..+
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~----~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 115 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ----ILDTLYQVLVELANQLRGSGEEVPTTGLSTSE 115 (365)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC----CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHH
Confidence 345889999999999999999987654322 23444432 22334455555655553 111 012
Q ss_pred cHHHHHHHHc--cceEEEEEecCCCHH-----HHHHHHhcc--CCC-CCCCEEEEEeCchhhhhhcC-------CCeEEE
Q 041551 232 DVRSQLNRLA--RKMVLLVFDDVNNPR-----QIESLIGHL--DHL-ASGSRVIITTRDKQVLKNCW-------AGQIYQ 294 (808)
Q Consensus 232 ~~~~l~~~L~--~~~~LlVlDdv~~~~-----~~~~l~~~l--~~~-~~gs~IiiTTR~~~v~~~~~-------~~~~~~ 294 (808)
....+.+.+. +++++||||+++... .+..+.... ... +....+|.+|...+...... ....+.
T Consensus 116 ~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~ 195 (365)
T TIGR02928 116 VFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEII 195 (365)
T ss_pred HHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceee
Confidence 3444555553 567899999998651 133333221 111 12334455555443322111 124678
Q ss_pred ecCCChhhHHHHHHHHhhc---CCCCCchHHHHHHHHHHHhcCchh-hHHHHhhhh--c---C---CCHHHHHHHHhhhh
Q 041551 295 MKELVYTDAQKLFSQYAFR---GGHLDSSYTELTDKAIKYAQGVPL-ALKVLGCYL--C---G---RSKEEWESAMRKLE 362 (808)
Q Consensus 295 l~~L~~~ea~~Lf~~~~~~---~~~~~~~~~~~~~~i~~~~~glPL-al~~~~~~L--~---~---~~~~~w~~~l~~l~ 362 (808)
+++++.+|..+++..++-. .....++..+...+++....|.|- |+.++-... . + -+.+..+.+.+.+.
T Consensus 196 f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 196 FPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 9999999999999988731 111222333344556666668774 333322111 1 1 24455555544432
Q ss_pred cCcchhHHHHHHHhhcCCcHHHHHHHhhhhhc
Q 041551 363 IIPHVEIQEVLKISYDSLDDSQKNIFLDIACF 394 (808)
Q Consensus 363 ~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f 394 (808)
.....-++..||.++|.++..++..
T Consensus 276 -------~~~~~~~i~~l~~~~~~~l~ai~~~ 300 (365)
T TIGR02928 276 -------KDRLLELIRGLPTHSKLVLLAIANL 300 (365)
T ss_pred -------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1233445678999998877776643
No 52
>PLN03150 hypothetical protein; Provisional
Probab=98.53 E-value=1.8e-07 Score=108.91 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=75.5
Q ss_pred CcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCcccccccccccEEEecccC
Q 041551 558 LEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVG 636 (808)
Q Consensus 558 L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~ 636 (808)
++.|+|++|...+.+|..++.+++|+.|+|++|...+.+|..+ .+++|+.|+|++| .
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N----------------------~ 477 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN----------------------S 477 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC----------------------C
Confidence 5556666665555666666666666666666655444555544 5555555555554 4
Q ss_pred Ce-ecCcccccCCcCcEEEeecCCCcccccccccCC-CCCCEEEeecCCCCccccCCC
Q 041551 637 IK-ELPSSIECLSNLQYLYIWDCSELESISSSIFKL-NSLESIDISNCSNLKRFLEIP 692 (808)
Q Consensus 637 i~-~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l-~~L~~L~l~~c~~l~~lp~~~ 692 (808)
++ .+|..+++|++|+.|+|++|.+.+.+|..+..+ .++..+++.+|+.+...|.++
T Consensus 478 lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~ 535 (623)
T PLN03150 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLR 535 (623)
T ss_pred CCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCCC
Confidence 44 467778888889999998888888888877653 467788888887766555443
No 53
>PF13173 AAA_14: AAA domain
Probab=98.52 E-value=8.3e-07 Score=81.25 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=78.5
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLL 247 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~Ll 247 (808)
+++.|.|+.|+|||||+++++.+.. .-...+++....... ..... .+..+.+.+....++.++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~i 65 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRD-----RRLAD-----------PDLLEYFLELIKPGKKYI 65 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHH-----HHHhh-----------hhhHHHHHHhhccCCcEE
Confidence 5789999999999999999998655 234455554211110 00000 001223333333477899
Q ss_pred EEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhhhhhc------CCCeEEEecCCChhh
Q 041551 248 VFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQVLKNC------WAGQIYQMKELVYTD 302 (808)
Q Consensus 248 VlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~------~~~~~~~l~~L~~~e 302 (808)
+||+|.....|......+-+..+..+|++|+........- +....+++.||+..|
T Consensus 66 ~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 66 FIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred EEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 9999999888888877776666778999999988766331 123467899998776
No 54
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.50 E-value=1e-06 Score=89.59 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=91.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+.+.|+|.+|+|||+||+.++++........+++....- .. .. . .+.+.+.+ .-+
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~-~~--~~----~----------------~~~~~~~~-~~l 93 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL-AQ--AD----P----------------EVLEGLEQ-ADL 93 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH-HH--hH----H----------------HHHhhccc-CCE
Confidence 4568899999999999999999876555455566652111 10 00 0 11111222 248
Q ss_pred EEEecCCCHH---H-HHHHHhccCC-CCCCCEEEEEeCchh---------hhhhcCCCeEEEecCCChhhHHHHHHHHhh
Q 041551 247 LVFDDVNNPR---Q-IESLIGHLDH-LASGSRVIITTRDKQ---------VLKNCWAGQIYQMKELVYTDAQKLFSQYAF 312 (808)
Q Consensus 247 lVlDdv~~~~---~-~~~l~~~l~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 312 (808)
|||||++... . .+.+...+.. ...+.++|+||+... +...+.....+++++++.++...++...+-
T Consensus 94 LvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 94 VCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred EEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 9999997532 1 2333332221 123457888887532 122222346789999999999999887653
Q ss_pred cCCCCCchHHHHHHHHHHHhcCchhhHHHHhh
Q 041551 313 RGGHLDSSYTELTDKAIKYAQGVPLALKVLGC 344 (808)
Q Consensus 313 ~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~ 344 (808)
... ..-..+..+.+++.++|.|..+..+..
T Consensus 174 ~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 174 RRG--LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HcC--CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 221 223345667788888888877765543
No 55
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.48 E-value=1.4e-07 Score=112.30 Aligned_cols=172 Identities=25% Similarity=0.284 Sum_probs=112.4
Q ss_pred CCCCceeEEEecCCC--CCCc----ccCcccceEeecCCC-CcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCC
Q 041551 487 VPFAEVRHLEWARCP--LKTL----NICAEKLVSLKMPRS-KVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNL 558 (808)
Q Consensus 487 ~~~~~Lr~L~l~~~~--l~~l----~~~~~~L~~L~L~~n-~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L 558 (808)
...++|++|-+.+|. +..+ +..++.|++|||++| .+.++|..+++|-+|++|+|+++. +..+|. +.+|..|
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKL 620 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhh
Confidence 335578888888875 3433 556899999999965 467899999999999999999986 556774 9999999
Q ss_pred cEEecCCCCCCccccccccCCCCcCEEecCCCCCCCc----CCCcCCCCCCCEEeccCCCCCCcccccccc-----cccE
Q 041551 559 EILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTS----LPTSIHSKHLKELSLRGCSNLKIFPEITSC-----HMWR 629 (808)
Q Consensus 559 ~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~----lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~-----~L~~ 629 (808)
.+|++..+..+..+|.....|++|++|.+..-. ... +....++.+|+.|.....+. ..+-...+. ..+.
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQS 698 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHh
Confidence 999999887777776666779999999987632 110 00111455566555544322 101111000 0223
Q ss_pred EEecccCCeecCcccccCCcCcEEEeecCCCc
Q 041551 630 LELTKVGIKELPSSIECLSNLQYLYIWDCSEL 661 (808)
Q Consensus 630 L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l 661 (808)
+.+.++.....+..+..+.+|+.|.+.+|...
T Consensus 699 l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 699 LSIEGCSKRTLISSLGSLGNLEELSILDCGIS 730 (889)
T ss_pred hhhcccccceeecccccccCcceEEEEcCCCc
Confidence 33334444555666777777777777777653
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.46 E-value=5.3e-07 Score=96.36 Aligned_cols=29 Identities=14% Similarity=0.348 Sum_probs=13.5
Q ss_pred ceeEEEecCCCCCCcccCcccceEeecCC
Q 041551 491 EVRHLEWARCPLKTLNICAEKLVSLKMPR 519 (808)
Q Consensus 491 ~Lr~L~l~~~~l~~l~~~~~~L~~L~L~~ 519 (808)
+++.|++++|.++.++..+.+|++|.+++
T Consensus 53 ~l~~L~Is~c~L~sLP~LP~sLtsL~Lsn 81 (426)
T PRK15386 53 ASGRLYIKDCDIESLPVLPNELTEITIEN 81 (426)
T ss_pred CCCEEEeCCCCCcccCCCCCCCcEEEccC
Confidence 44455555554444443344444444443
No 57
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.44 E-value=4.6e-06 Score=99.81 Aligned_cols=206 Identities=14% Similarity=0.193 Sum_probs=126.3
Q ss_pred cceEEEEEecCC--CHHH---HHHHHhccC--CC-CCCCEEEEEeCch--hhhhhcCCCeEEEecCCChhhHHHHHHHHh
Q 041551 242 RKMVLLVFDDVN--NPRQ---IESLIGHLD--HL-ASGSRVIITTRDK--QVLKNCWAGQIYQMKELVYTDAQKLFSQYA 311 (808)
Q Consensus 242 ~~~~LlVlDdv~--~~~~---~~~l~~~l~--~~-~~gs~IiiTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 311 (808)
.++..+|+||+. |+.. ++.++.... .. ....-.+.|.+.. .+.........+.+.||+..+...+.....
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l 232 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL 232 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh
Confidence 469999999994 3222 334443322 00 0011122233322 111112234688999999999999998877
Q ss_pred hcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhhcCC-------CHHHHHHHHhhhhcCcc-hhHHHHHHHhhcCCcHH
Q 041551 312 FRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYLCGR-------SKEEWESAMRKLEIIPH-VEIQEVLKISYDSLDDS 383 (808)
Q Consensus 312 ~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~sy~~L~~~ 383 (808)
... .....+..+.|+++..|+|+-++.+-..+... +...|..-..++...+. +++...+..-.+.||..
T Consensus 233 ~~~---~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 233 GCT---KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred CCc---ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHH
Confidence 321 23344667899999999999999888877642 34456555554443322 23455678888999999
Q ss_pred HHHHHhhhhhccCCcchhHHHHHHhhcCCcchhhhhhhhcccceeeec--------CCeE---EecHHHHHHHHHHHh
Q 041551 384 QKNIFLDIACFLEGEHRDKVISFFDASGLEAKIELSVLEGKSLINLDV--------FDQI---RMHDLLRDMGREIVR 450 (808)
Q Consensus 384 ~k~~fl~la~fp~~~~~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~~--------~~~~---~mHdlv~~~~~~i~~ 450 (808)
.|+++...||+...++.+.+..++.......-..+......++|.... .... -.|+.+|+.+-....
T Consensus 310 t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 310 TREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIP 387 (849)
T ss_pred HHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCc
Confidence 999999999999999988887777654333333333333334443311 0111 468888887754443
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.40 E-value=5.9e-07 Score=96.02 Aligned_cols=135 Identities=19% Similarity=0.356 Sum_probs=94.0
Q ss_pred hhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEE
Q 041551 529 VQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKEL 608 (808)
Q Consensus 529 ~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L 608 (808)
+..+.+++.|++++| .+..+|.+ ..+|+.|.+++|..+..+|..+. .+|++|++++|..+..+|. +|+.|
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~-----sLe~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPVL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE-----SVRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCCC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc-----ccceE
Confidence 566899999999999 57777742 34799999999988888887653 6899999999988888875 47777
Q ss_pred eccCCC--CCCcccccccccccEEEecccC-C--eecCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecC
Q 041551 609 SLRGCS--NLKIFPEITSCHMWRLELTKVG-I--KELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNC 682 (808)
Q Consensus 609 ~L~~~~--~l~~~p~~~~~~L~~L~L~~n~-i--~~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c 682 (808)
+++++. .+..+|.. |+.|.+.+++ . ..+|.. -.++|+.|++++|... .+|..+. .+|+.|.++.|
T Consensus 118 ~L~~n~~~~L~~LPss----Lk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATDSIKNVPNG----LTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EeCCCCCcccccCcch----Hhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 776542 34555543 5567664432 1 112211 1157899999888864 4554443 58888888775
No 59
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.36 E-value=3.4e-05 Score=85.68 Aligned_cols=153 Identities=25% Similarity=0.353 Sum_probs=90.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHH-HccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNR-LARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~-L~~~~~ 245 (808)
...+.++|++|+||||||+.+++.....|.. +... ..+...+ +.++. ..... ..+++.
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~-----~~~~~~i-r~ii~------------~~~~~~~~g~~~ 94 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV-----TSGVKDL-REVIE------------EARQRRSAGRRT 94 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc-----cccHHHH-HHHHH------------HHHHhhhcCCce
Confidence 4568889999999999999999876544321 2211 1111111 11111 11111 135778
Q ss_pred EEEEecCCCH--HHHHHHHhccCCCCCCCEEEE--EeCchhhh--hh-cCCCeEEEecCCChhhHHHHHHHHhhcCCCCC
Q 041551 246 LLVFDDVNNP--RQIESLIGHLDHLASGSRVII--TTRDKQVL--KN-CWAGQIYQMKELVYTDAQKLFSQYAFRGGHLD 318 (808)
Q Consensus 246 LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Iii--TTR~~~v~--~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 318 (808)
+|++|+++.. .+.+.+...+. .|..++| ||.+.... .. .....++.+.+++.++..+++.+.+.......
T Consensus 95 vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~ 171 (413)
T PRK13342 95 ILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL 171 (413)
T ss_pred EEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC
Confidence 9999999853 45666666544 2555555 34443211 11 12236889999999999999988653211111
Q ss_pred -chHHHHHHHHHHHhcCchhhHHHHh
Q 041551 319 -SSYTELTDKAIKYAQGVPLALKVLG 343 (808)
Q Consensus 319 -~~~~~~~~~i~~~~~glPLal~~~~ 343 (808)
.-..+..+.+++.++|.+..+..+.
T Consensus 172 i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 172 VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 2335667889999999887654433
No 60
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=8.2e-08 Score=106.86 Aligned_cols=168 Identities=24% Similarity=0.248 Sum_probs=75.9
Q ss_pred CCceeEEEecCCCCCCc-c--cCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCC
Q 041551 489 FAEVRHLEWARCPLKTL-N--ICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRG 565 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l-~--~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~ 565 (808)
+.+|..|++.+|.++.+ . .++.+|++|++++|.|+.+. ++..++.|+.|++++|. +..++.+..+++|+.+++++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSY 171 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccCCccchhhhcccCCc
Confidence 45555555555555554 2 34555555555555555552 34444445555555553 34444444455555555555
Q ss_pred CCCCcccccc-ccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCC--cccccccccccEEEecccCCeecCc
Q 041551 566 CLSLVETHST-IQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLK--IFPEITSCHMWRLELTKVGIKELPS 642 (808)
Q Consensus 566 n~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~--~~p~~~~~~L~~L~L~~n~i~~lp~ 642 (808)
|... .+... ...+.+|+.+.+.+| .+..+...-.+..+..+++..|.... .++......|+.+++++|.+..++.
T Consensus 172 n~i~-~ie~~~~~~~~~l~~l~l~~n-~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~ 249 (414)
T KOG0531|consen 172 NRIV-DIENDELSELISLEELDLGGN-SIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPE 249 (414)
T ss_pred chhh-hhhhhhhhhccchHHHhccCC-chhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccc
Confidence 5322 22211 344555555555553 23322221122223333333332111 1111111114555566666555554
Q ss_pred ccccCCcCcEEEeecCCC
Q 041551 643 SIECLSNLQYLYIWDCSE 660 (808)
Q Consensus 643 ~~~~l~~L~~L~L~~n~~ 660 (808)
.+..+..+..|++.+|..
T Consensus 250 ~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 250 GLENLKNLPVLDLSSNRI 267 (414)
T ss_pred cccccccccccchhhccc
Confidence 555555555666555544
No 61
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=1.3e-07 Score=105.20 Aligned_cols=187 Identities=25% Similarity=0.278 Sum_probs=137.9
Q ss_pred ceeEEEecCCCCCCc---ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCC
Q 041551 491 EVRHLEWARCPLKTL---NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCL 567 (808)
Q Consensus 491 ~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~ 567 (808)
.+..+.+..|.+... ...+++|..|++..|.|..+...+..+++|++|+|++|. ++.+..+..++.|+.|++.+|.
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGNL 151 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccCc
Confidence 334444555555442 456789999999999999987668899999999999995 6677778888899999999984
Q ss_pred CCccccccccCCCCcCEEecCCCCCCCcCCC--cCCCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCcccc
Q 041551 568 SLVETHSTIQYLNKLEDLDLDYCISLTSLPT--SIHSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSSIE 645 (808)
Q Consensus 568 ~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~--~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~ 645 (808)
+..+ ..+..++.|+.+++++| .+..++. ...+.+|+.+.+.+|.....-.......+..+++..|.++.+-. +.
T Consensus 152 -i~~~-~~~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~-l~ 227 (414)
T KOG0531|consen 152 -ISDI-SGLESLKSLKLLDLSYN-RIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG-LN 227 (414)
T ss_pred -chhc-cCCccchhhhcccCCcc-hhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC-cc
Confidence 4344 35667999999999995 5677766 35778999999999854433222222335556888888887632 33
Q ss_pred cCCc--CcEEEeecCCCcccccccccCCCCCCEEEeecCC
Q 041551 646 CLSN--LQYLYIWDCSELESISSSIFKLNSLESIDISNCS 683 (808)
Q Consensus 646 ~l~~--L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~ 683 (808)
.+.. |+.+++++|++ ..++..+..+..+..|++.++.
T Consensus 228 ~~~~~~L~~l~l~~n~i-~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 228 ELVMLHLRELYLSGNRI-SRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred cchhHHHHHHhcccCcc-ccccccccccccccccchhhcc
Confidence 3444 89999999987 5554567778889999988763
No 62
>PRK09087 hypothetical protein; Validated
Probab=98.31 E-value=9.2e-06 Score=81.89 Aligned_cols=138 Identities=12% Similarity=0.099 Sum_probs=86.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
-+.+.|+|..|+|||+|++.+++... ..|+... .+....... +.+ -+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~~----------~~~~~~~~~----------------~~~--~~ 90 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHPN----------EIGSDAANA----------------AAE--GP 90 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecHH----------HcchHHHHh----------------hhc--Ce
Confidence 35589999999999999999887532 2344410 111111111 111 27
Q ss_pred EEEecCCC----HHHHHHHHhccCCCCCCCEEEEEeCc---------hhhhhhcCCCeEEEecCCChhhHHHHHHHHhhc
Q 041551 247 LVFDDVNN----PRQIESLIGHLDHLASGSRVIITTRD---------KQVLKNCWAGQIYQMKELVYTDAQKLFSQYAFR 313 (808)
Q Consensus 247 lVlDdv~~----~~~~~~l~~~l~~~~~gs~IiiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 313 (808)
|++||++. .+.+-.+...+. ..|..||+|++. +++...+....++++++++.++-.+++.+.+-.
T Consensus 91 l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 91 VLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 88899953 233333333332 346779998874 333344455678999999999999999988843
Q ss_pred CCCCCchHHHHHHHHHHHhcCchhhHHH
Q 041551 314 GGHLDSSYTELTDKAIKYAQGVPLALKV 341 (808)
Q Consensus 314 ~~~~~~~~~~~~~~i~~~~~glPLal~~ 341 (808)
. ...-.+++.+.|++.+.|..-++..
T Consensus 169 ~--~~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 169 R--QLYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred c--CCCCCHHHHHHHHHHhhhhHHHHHH
Confidence 2 2233456677788888877666554
No 63
>PRK08727 hypothetical protein; Validated
Probab=98.31 E-value=9e-06 Score=82.68 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=87.7
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLL 247 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~Ll 247 (808)
..+.|+|..|+|||.||+++++....+...+.|+.... ....+ ....+.+ .+.-+|
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~----------~~~~~-------------~~~~~~l-~~~dlL 97 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA----------AAGRL-------------RDALEAL-EGRSLV 97 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH----------hhhhH-------------HHHHHHH-hcCCEE
Confidence 34899999999999999999997766655667765211 11100 0111122 233589
Q ss_pred EEecCCCH---HHH-HHHHhccCC-CCCCCEEEEEeCchh---------hhhhcCCCeEEEecCCChhhHHHHHHHHhhc
Q 041551 248 VFDDVNNP---RQI-ESLIGHLDH-LASGSRVIITTRDKQ---------VLKNCWAGQIYQMKELVYTDAQKLFSQYAFR 313 (808)
Q Consensus 248 VlDdv~~~---~~~-~~l~~~l~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 313 (808)
||||++.. ..+ +.+...+.. ...|..||+||+... +.........+++++++.++-.+++.+++..
T Consensus 98 iIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 98 ALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred EEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 99999732 112 222222111 134667999998542 2222223468899999999999999987743
Q ss_pred CCCCCchHHHHHHHHHHHhcCchhh
Q 041551 314 GGHLDSSYTELTDKAIKYAQGVPLA 338 (808)
Q Consensus 314 ~~~~~~~~~~~~~~i~~~~~glPLa 338 (808)
.. -.-..+....|++.++|-.-.
T Consensus 178 ~~--l~l~~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 178 RG--LALDEAAIDWLLTHGERELAG 200 (233)
T ss_pred cC--CCCCHHHHHHHHHhCCCCHHH
Confidence 22 233345667777777754433
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.1e-08 Score=101.33 Aligned_cols=105 Identities=24% Similarity=0.388 Sum_probs=75.2
Q ss_pred ccceEeecCCCCcc--cccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCcccc--ccccCCCCcCE
Q 041551 510 EKLVSLKMPRSKVQ--QLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVETH--STIQYLNKLED 584 (808)
Q Consensus 510 ~~L~~L~L~~n~l~--~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p--~~~~~l~~L~~ 584 (808)
..|+.|||++..|+ .+..-++.|.+|+.|.|.++.+-..+-. +.+-.+|+.|+|+.|..++... --+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 45888999998887 4555578899999999999876554443 7888899999999987766533 23567888888
Q ss_pred EecCCCCCCCcCCCc-C-C-CCCCCEEeccCCC
Q 041551 585 LDLDYCISLTSLPTS-I-H-SKHLKELSLRGCS 614 (808)
Q Consensus 585 L~l~~~~~l~~lp~~-~-~-l~~L~~L~L~~~~ 614 (808)
|+|+.|-.....-.. + + -++|..|+|+||.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 888888544433111 1 1 2567778888773
No 65
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.26 E-value=7.2e-06 Score=75.39 Aligned_cols=108 Identities=20% Similarity=0.252 Sum_probs=68.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc-----cCceEEEecchhhhhccCHHHHHHHHHhhHhcCccc-----ccHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH-----FEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRIL-----RDVRSQ 236 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-----F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-----~~~~~l 236 (808)
-+.+.|+|.+|+|||++++++++..... -..++|+.. ........+...+...+...... +..+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNC----PSSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEH----HHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEe----CCCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 3568999999999999999999976543 244556663 33336677777777766544322 444566
Q ss_pred HHHHccc-eEEEEEecCCCH---HHHHHHHhccCCCCCCCEEEEEeCc
Q 041551 237 LNRLARK-MVLLVFDDVNNP---RQIESLIGHLDHLASGSRVIITTRD 280 (808)
Q Consensus 237 ~~~L~~~-~~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~IiiTTR~ 280 (808)
.+.+.+. ..+||+|+++.. +.++.+..... ..+.++|+..+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6666544 469999999765 33555543333 667778777665
No 66
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=0.00012 Score=83.69 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=67.0
Q ss_pred cceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEeCchhhh-hhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITTRDKQVL-KNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTTR~~~v~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
++.-++|||+++.. ..++.|+..+.......++|+||.+..-. ..+ .-...++++.++.++..+.+.+.+... .
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E--g 195 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE--R 195 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHc--C
Confidence 45568899999864 44777877776656677888877765422 121 223689999999999999998877322 2
Q ss_pred CchHHHHHHHHHHHhcCch-hhHHH
Q 041551 318 DSSYTELTDKAIKYAQGVP-LALKV 341 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glP-Lal~~ 341 (808)
..-..+..+.|++.++|.. -|+..
T Consensus 196 I~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 196 IAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2334566788899998854 45554
No 67
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.25 E-value=3.4e-05 Score=77.51 Aligned_cols=157 Identities=17% Similarity=0.281 Sum_probs=89.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccC--ceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFE--GSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~--~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~ 244 (808)
...+.|+|..|+|||.|.+++++.+....+ .++++.. .++...+...+.. .....+++.++ .-
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~----------~~f~~~~~~~~~~----~~~~~~~~~~~-~~ 98 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA----------EEFIREFADALRD----GEIEEFKDRLR-SA 98 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH----------HHHHHHHHHHHHT----TSHHHHHHHHC-TS
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH----------HHHHHHHHHHHHc----ccchhhhhhhh-cC
Confidence 334789999999999999999998766544 3556552 2233333333222 23455556665 34
Q ss_pred EEEEEecCCCH---HHH-HHHHhccCC-CCCCCEEEEEeCchhh---------hhhcCCCeEEEecCCChhhHHHHHHHH
Q 041551 245 VLLVFDDVNNP---RQI-ESLIGHLDH-LASGSRVIITTRDKQV---------LKNCWAGQIYQMKELVYTDAQKLFSQY 310 (808)
Q Consensus 245 ~LlVlDdv~~~---~~~-~~l~~~l~~-~~~gs~IiiTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 310 (808)
=+|++||++.. ..| +.+...+.. ...|.+||+|++...- ........++++++.+.++-.+++.+.
T Consensus 99 DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 99 DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHH
T ss_pred CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHH
Confidence 57889999753 212 222221111 1357789999965521 122234578999999999999999988
Q ss_pred hhcCCCCCchHHHHHHHHHHHhcCchhhHH
Q 041551 311 AFRGGHLDSSYTELTDKAIKYAQGVPLALK 340 (808)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 340 (808)
+-...- .-.+++++-+++.+.+..-.|.
T Consensus 179 a~~~~~--~l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 179 AKERGI--ELPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHhCC--CCcHHHHHHHHHhhcCCHHHHH
Confidence 843222 2334556666666665554443
No 68
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.24 E-value=1.1e-05 Score=82.16 Aligned_cols=148 Identities=17% Similarity=0.198 Sum_probs=88.8
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLL 247 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~Ll 247 (808)
+.+.|+|+.|+|||+||+.+++.....-..+.|+..... . .. ...+.+.+.+ --+|
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~----~---~~----------------~~~~~~~~~~-~dll 101 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR----A---WF----------------VPEVLEGMEQ-LSLV 101 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH----h---hh----------------hHHHHHHhhh-CCEE
Confidence 468899999999999999999976655445566652110 0 00 0111122211 2478
Q ss_pred EEecCCCH---HHHHH-HHhccCC-CCCC-CEEEEEeCchh---------hhhhcCCCeEEEecCCChhhHHHHHHHHhh
Q 041551 248 VFDDVNNP---RQIES-LIGHLDH-LASG-SRVIITTRDKQ---------VLKNCWAGQIYQMKELVYTDAQKLFSQYAF 312 (808)
Q Consensus 248 VlDdv~~~---~~~~~-l~~~l~~-~~~g-s~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 312 (808)
++||+... .+|+. +...+.. ...| .++|+||+... +...+....+++++++++++-.+.+.+++.
T Consensus 102 iiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 102 CIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred EEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 99999653 22322 2111111 1123 47999998552 233344557899999999999999887663
Q ss_pred cCCCCCchHHHHHHHHHHHhcCchhhHHH
Q 041551 313 RGGHLDSSYTELTDKAIKYAQGVPLALKV 341 (808)
Q Consensus 313 ~~~~~~~~~~~~~~~i~~~~~glPLal~~ 341 (808)
.. .-.-.++...-|++.+.|..-++..
T Consensus 182 ~~--~~~l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 182 LR--GFELPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred Hc--CCCCCHHHHHHHHHhhcCCHHHHHH
Confidence 32 1233456677788888776555443
No 69
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.8e-08 Score=97.55 Aligned_cols=171 Identities=21% Similarity=0.260 Sum_probs=109.7
Q ss_pred CceeEEEecCCCCCCc-----ccCcccceEeecCCCCcc-cccchhhcccccceeccCCCCCCCCCCC---CCCCCCCcE
Q 041551 490 AEVRHLEWARCPLKTL-----NICAEKLVSLKMPRSKVQ-QLWDDVQDLVNLKEIDLSRSESLTKLPD---LSRAKNLEI 560 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l-----~~~~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~~~~~~p~---~~~l~~L~~ 560 (808)
+.|++|+++...++.- ...+.+|+.|.|.++++. .+-..+.+=.+|+.|+|+.|...+...- +.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4577888877665432 556778888888888876 3444567778888888888876665542 678888888
Q ss_pred EecCCCCCCcccccc-cc-CCCCcCEEecCCCCCCCc---CCCcC-CCCCCCEEeccCCCCCCcccccccccccEEEecc
Q 041551 561 LWLRGCLSLVETHST-IQ-YLNKLEDLDLDYCISLTS---LPTSI-HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTK 634 (808)
Q Consensus 561 L~L~~n~~l~~~p~~-~~-~l~~L~~L~l~~~~~l~~---lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~ 634 (808)
|+|+.|......-.. +. --++|+.|+|+||..--. +.... .+++|..|||++|..++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~---------------- 328 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN---------------- 328 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc----------------
Confidence 888888544332111 11 125788888888743211 11111 567788888888744331
Q ss_pred cCCeecCcccccCCcCcEEEeecCCCccccccc---ccCCCCCCEEEeecC
Q 041551 635 VGIKELPSSIECLSNLQYLYIWDCSELESISSS---IFKLNSLESIDISNC 682 (808)
Q Consensus 635 n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~~---~~~l~~L~~L~l~~c 682 (808)
.+-..|-.++.|++|.++.|.. .+|.. +...|+|.+|++.+|
T Consensus 329 ----~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 329 ----DCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ----hHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 1112355677888888888764 33432 556778888888876
No 70
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=8.1e-05 Score=81.09 Aligned_cols=166 Identities=15% Similarity=0.158 Sum_probs=92.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhH---hc--CcccccHHHHHHHH-
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDV---LN--DRILRDVRSQLNRL- 240 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~---~~--~~~~~~~~~l~~~L- 240 (808)
.+.+.++|+.|+||||+|+.+++.+........ .....-.....+.......+ .. ....+.++.+.+.+
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-----~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~ 112 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-----NPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIY 112 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-----CCCCCCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHh
Confidence 456789999999999999999986532110000 00000000000000000000 00 00011122222222
Q ss_pred ----ccceEEEEEecCCCHH--HHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEecCCChhhHHHHHHHHhh
Q 041551 241 ----ARKMVLLVFDDVNNPR--QIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMKELVYTDAQKLFSQYAF 312 (808)
Q Consensus 241 ----~~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~ 312 (808)
.+++-++|+|+++... .++.++..+.......++|++|.+.+ +.... .....+++++++.++..+.+...+-
T Consensus 113 ~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~ 192 (363)
T PRK14961 113 YSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILI 192 (363)
T ss_pred cCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHH
Confidence 2355699999998653 46777777766566777777665443 32221 2236889999999999998888763
Q ss_pred cCCCCCchHHHHHHHHHHHhcCchhhH
Q 041551 313 RGGHLDSSYTELTDKAIKYAQGVPLAL 339 (808)
Q Consensus 313 ~~~~~~~~~~~~~~~i~~~~~glPLal 339 (808)
..+ ..-..+.++.|++.++|.|-.+
T Consensus 193 ~~g--~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 193 KES--IDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 322 2233456778999999987543
No 71
>PRK05642 DNA replication initiation factor; Validated
Probab=98.19 E-value=2.4e-05 Score=79.55 Aligned_cols=149 Identities=19% Similarity=0.260 Sum_probs=89.8
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLL 247 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~Ll 247 (808)
..+.|+|..|+|||.|++++++.+..+-..++|+... ++... ...+.+.+.+-. +|
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~----------~~~~~-------------~~~~~~~~~~~d-~L 101 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA----------ELLDR-------------GPELLDNLEQYE-LV 101 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH----------HHHhh-------------hHHHHHhhhhCC-EE
Confidence 5578999999999999999998766554566777621 11110 112333333333 67
Q ss_pred EEecCCCH---HHHH-HHHhccCC-CCCCCEEEEEeCchhh---------hhhcCCCeEEEecCCChhhHHHHHHHHhhc
Q 041551 248 VFDDVNNP---RQIE-SLIGHLDH-LASGSRVIITTRDKQV---------LKNCWAGQIYQMKELVYTDAQKLFSQYAFR 313 (808)
Q Consensus 248 VlDdv~~~---~~~~-~l~~~l~~-~~~gs~IiiTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 313 (808)
|+||+... ..|+ .+...+.. ...|.+||+||+...- ...+....++++++++.++-.+.+..++..
T Consensus 102 iiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 102 CLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred EEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 88999632 2332 23322221 1346778998875432 111223467899999999999999866643
Q ss_pred CCCCCchHHHHHHHHHHHhcCchhhHHHH
Q 041551 314 GGHLDSSYTELTDKAIKYAQGVPLALKVL 342 (808)
Q Consensus 314 ~~~~~~~~~~~~~~i~~~~~glPLal~~~ 342 (808)
.. -.-.+++.+-+++.+.|-.-++..+
T Consensus 182 ~~--~~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 182 RG--LHLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred cC--CCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 22 2222466777777777765554433
No 72
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.18 E-value=1.2e-06 Score=68.49 Aligned_cols=56 Identities=32% Similarity=0.414 Sum_probs=32.9
Q ss_pred cceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCC
Q 041551 511 KLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGC 566 (808)
Q Consensus 511 ~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n 566 (808)
+|++|++++|+++.+|+. |.++++|++|++++|.+....|. |.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 455666666666666543 56666666666666654333333 566666666666665
No 73
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=0.00021 Score=83.48 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=67.4
Q ss_pred ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCch-hhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCC
Q 041551 241 ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDK-QVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGH 316 (808)
Q Consensus 241 ~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 316 (808)
.+++-++|||+++. .+..+.|+..+.......++|++|.+. .+.... .....|++++|+.++..+.+.+.+-..
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E-- 194 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE-- 194 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc--
Confidence 35678999999975 566788887776655667666655544 333221 223789999999999999998876321
Q ss_pred CCchHHHHHHHHHHHhcCchhhH
Q 041551 317 LDSSYTELTDKAIKYAQGVPLAL 339 (808)
Q Consensus 317 ~~~~~~~~~~~i~~~~~glPLal 339 (808)
......+.++.|++.++|.|-.+
T Consensus 195 gI~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 195 QLPFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHH
Confidence 22334567788999999987543
No 74
>PLN03025 replication factor C subunit; Provisional
Probab=98.17 E-value=0.00013 Score=78.11 Aligned_cols=154 Identities=14% Similarity=0.170 Sum_probs=86.7
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhc-ccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISR-HFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMV 245 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~ 245 (808)
+.+.++|++|+||||+|+.+++.+.. .|...+.-.+ .+...+...+ +.......... ..+ .++.-
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~~~v-r~~i~~~~~~~---------~~~~~~~~k 101 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGIDVV-RNKIKMFAQKK---------VTLPPGRHK 101 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccHHHH-HHHHHHHHhcc---------ccCCCCCeE
Confidence 34679999999999999999997632 3332211111 1111222211 11111110000 000 23567
Q ss_pred EEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEeCch-hhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCCCchH
Q 041551 246 LLVFDDVNNP--RQIESLIGHLDHLASGSRVIITTRDK-QVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHLDSSY 321 (808)
Q Consensus 246 LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~ 321 (808)
++|||+++.. ...+.+...+......+++++++... .+.... .....+++++++.++..+.+...+-.... .-.
T Consensus 102 viiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi--~i~ 179 (319)
T PLN03025 102 IVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKV--PYV 179 (319)
T ss_pred EEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCC--CCC
Confidence 8999999853 33455554444445567777766443 221111 11257899999999999998887733221 223
Q ss_pred HHHHHHHHHHhcCch
Q 041551 322 TELTDKAIKYAQGVP 336 (808)
Q Consensus 322 ~~~~~~i~~~~~glP 336 (808)
.+..+.|++.++|-.
T Consensus 180 ~~~l~~i~~~~~gDl 194 (319)
T PLN03025 180 PEGLEAIIFTADGDM 194 (319)
T ss_pred HHHHHHHHHHcCCCH
Confidence 456788889998865
No 75
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.16 E-value=3.6e-05 Score=75.72 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=90.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc---------------------cCceEEEecchhhhhccCHHHHHHHHHhhHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH---------------------FEGSYFAQNVREAEETGGIKDLQKELLSDVL 225 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~---------------------F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 225 (808)
...+.++|..|+||||+|+.+.+.+-.. ++...++... ......
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~~~------------ 78 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSIKV------------ 78 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcCCH------------
Confidence 3668899999999999999999876431 1112222110 000111
Q ss_pred cCcccccHHHHHHHH-----ccceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEeCch-hhhhhc-CCCeEEEec
Q 041551 226 NDRILRDVRSQLNRL-----ARKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITTRDK-QVLKNC-WAGQIYQMK 296 (808)
Q Consensus 226 ~~~~~~~~~~l~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~ 296 (808)
+.++.+.+.+ .+.+-++|+||++.. +..+.++..+......+.+|++|++. .+.... .....+++.
T Consensus 79 -----~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~ 153 (188)
T TIGR00678 79 -----DQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFP 153 (188)
T ss_pred -----HHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCC
Confidence 1121222221 245678999999753 45777777776656677777777654 222221 223689999
Q ss_pred CCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchh
Q 041551 297 ELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPL 337 (808)
Q Consensus 297 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPL 337 (808)
+++.++..+.+.+. + -..+.++.+++.++|.|.
T Consensus 154 ~~~~~~~~~~l~~~--g------i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 154 PLSEEALLQWLIRQ--G------ISEEAAELLLALAGGSPG 186 (188)
T ss_pred CCCHHHHHHHHHHc--C------CCHHHHHHHHHHcCCCcc
Confidence 99999998888776 1 124668899999999885
No 76
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.15 E-value=7.5e-05 Score=85.81 Aligned_cols=215 Identities=12% Similarity=0.091 Sum_probs=107.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc-----cC--ceEEEecchhhhhccCHHHHHHHHHhhHhcCccc------ccH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH-----FE--GSYFAQNVREAEETGGIKDLQKELLSDVLNDRIL------RDV 233 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-----F~--~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~------~~~ 233 (808)
..++-|+|.+|.|||+.++.|.+++... .+ ..+++.+.. ......+...+..++.+.... +.+
T Consensus 781 nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~----Lstp~sIYqvI~qqL~g~~P~~GlsS~evL 856 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN----VVHPNAAYQVLYKQLFNKKPPNALNSFKIL 856 (1164)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc----cCCHHHHHHHHHHHHcCCCCCccccHHHHH
Confidence 4567899999999999999999865432 22 234554322 122333444444444222211 223
Q ss_pred HHHHHHHc---cceEEEEEecCCCHH--HHHHHHhccCCC-CCCCEEEE--EeCchhhh--------hhcCCCeEEEecC
Q 041551 234 RSQLNRLA---RKMVLLVFDDVNNPR--QIESLIGHLDHL-ASGSRVII--TTRDKQVL--------KNCWAGQIYQMKE 297 (808)
Q Consensus 234 ~~l~~~L~---~~~~LlVlDdv~~~~--~~~~l~~~l~~~-~~gs~Iii--TTR~~~v~--------~~~~~~~~~~l~~ 297 (808)
..+...+. +...+||||+|+... .-+.|...+.|. ..+++|+| +|...++. ..++ ...+..++
T Consensus 857 erLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg-~eeIvF~P 935 (1164)
T PTZ00112 857 DRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLA-FGRLVFSP 935 (1164)
T ss_pred HHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccc-cccccCCC
Confidence 33333331 224689999997532 112222112111 23556544 34322221 1111 22356699
Q ss_pred CChhhHHHHHHHHhhcCCC--CCchHHHHHHHHHHHhcCchhhHHHHhhhhcC--C---CHHHHHHHHhhhhcCcchhHH
Q 041551 298 LVYTDAQKLFSQYAFRGGH--LDSSYTELTDKAIKYAQGVPLALKVLGCYLCG--R---SKEEWESAMRKLEIIPHVEIQ 370 (808)
Q Consensus 298 L~~~ea~~Lf~~~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~--~---~~~~w~~~l~~l~~~~~~~i~ 370 (808)
++.++-.+++..++-.... .+...+-+|+.++...|..-.||.++-..... . ..+....+..++...
T Consensus 936 YTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT~eHVrkAleeiE~s------ 1009 (1164)
T PTZ00112 936 YKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQLFDS------ 1009 (1164)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHHHhh------
Confidence 9999999999998843211 12222233333333334455666554443321 1 233333333333211
Q ss_pred HHHHHhhcCCcHHHHHHHhhhhh
Q 041551 371 EVLKISYDSLDDSQKNIFLDIAC 393 (808)
Q Consensus 371 ~~l~~sy~~L~~~~k~~fl~la~ 393 (808)
.+.-....||.+.|.+++.+..
T Consensus 1010 -rI~e~IktLPlHqKLVLlALIl 1031 (1164)
T PTZ00112 1010 -PLTNAINYLPWPFKMFLTCLIV 1031 (1164)
T ss_pred -hHHHHHHcCCHHHHHHHHHHHH
Confidence 1333446788888877765443
No 77
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.14 E-value=2.2e-06 Score=66.98 Aligned_cols=57 Identities=25% Similarity=0.326 Sum_probs=47.7
Q ss_pred ccEEEecccCCeecCc-ccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCC
Q 041551 627 MWRLELTKVGIKELPS-SIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCS 683 (808)
Q Consensus 627 L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~ 683 (808)
|++|++++|.|+.+|. .|.++++|+.|++++|.+...-|..|..+++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 5678888888999975 58999999999999888844444578999999999999985
No 78
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=0.00014 Score=82.07 Aligned_cols=165 Identities=13% Similarity=0.138 Sum_probs=95.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc--ccCceEEEecchhh---hhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR--HFEGSYFAQNVREA---EETGGIKDLQKELLSDVLNDRILRDVRSQLNRL- 240 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~--~F~~~~~~~~~~~~---~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L- 240 (808)
.+.+.++|++|+||||+|+.+++.+.. .+...++.+..... ....++..+-. ......+.++.+.+.+
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~------~~~~~vd~iR~l~~~~~ 109 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDA------ASNNSVEDVRDLREKVL 109 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecc------cccCCHHHHHHHHHHHh
Confidence 456789999999999999999987642 22223332210000 00000000000 0000012222233222
Q ss_pred ----ccceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEeCc-hhhhhhc-CCCeEEEecCCChhhHHHHHHHHhh
Q 041551 241 ----ARKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITTRD-KQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAF 312 (808)
Q Consensus 241 ----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~ 312 (808)
.+++-++|+|+++.. ..++.++..+......+.+|++|.. ..+.... .....+++.+++.++..+.+.+.+-
T Consensus 110 ~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~ 189 (504)
T PRK14963 110 LAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLE 189 (504)
T ss_pred hccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHH
Confidence 245668999999853 5577787777655555565555543 3332222 2346899999999999999998874
Q ss_pred cCCCCCchHHHHHHHHHHHhcCchhhH
Q 041551 313 RGGHLDSSYTELTDKAIKYAQGVPLAL 339 (808)
Q Consensus 313 ~~~~~~~~~~~~~~~i~~~~~glPLal 339 (808)
.... ....+.+..|++.++|.+--+
T Consensus 190 ~egi--~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 190 AEGR--EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred HcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 3222 224566788999999987544
No 79
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.10 E-value=3.1e-05 Score=78.77 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=87.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+.+.|+|..|+|||+||+.+++.....=....++..... ...+ ... ...-+
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~----------~~~~-----------------~~~-~~~~~ 93 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP----------LLAF-----------------DFD-PEAEL 93 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh----------HHHH-----------------hhc-ccCCE
Confidence 4568899999999999999999975433234455542110 0000 011 23347
Q ss_pred EEEecCCCH--HHHHHHHhccCCC-CCCC-EEEEEeCchhhhh--------hcCCCeEEEecCCChhhHHHHHHHHhhcC
Q 041551 247 LVFDDVNNP--RQIESLIGHLDHL-ASGS-RVIITTRDKQVLK--------NCWAGQIYQMKELVYTDAQKLFSQYAFRG 314 (808)
Q Consensus 247 lVlDdv~~~--~~~~~l~~~l~~~-~~gs-~IiiTTR~~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 314 (808)
+|+||++.. ...+.+...+... ..+. .+|+|++...... .+.....++++++++++-.+++.+.+-..
T Consensus 94 liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~ 173 (227)
T PRK08903 94 YAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAER 173 (227)
T ss_pred EEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 899999643 2223333333211 2333 4666766543211 22224688999999988777776654221
Q ss_pred CCCCchHHHHHHHHHHHhcCchhhHHHHhhhh
Q 041551 315 GHLDSSYTELTDKAIKYAQGVPLALKVLGCYL 346 (808)
Q Consensus 315 ~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L 346 (808)
. ..-.++..+.+++...|.+..+..+...+
T Consensus 174 ~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 174 G--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred C--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1 22334667778888889888876655444
No 80
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=0.00011 Score=78.56 Aligned_cols=153 Identities=17% Similarity=0.269 Sum_probs=92.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc------ccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR------HFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL 240 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~------~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L 240 (808)
.+...++|+.|+||||+|+.++..+-. +.+...|... ........++. .+...+... -.
T Consensus 26 ~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~---~~~~i~v~~ir-~~~~~~~~~-----------p~ 90 (313)
T PRK05564 26 SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI---NKKSIGVDDIR-NIIEEVNKK-----------PY 90 (313)
T ss_pred CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc---cCCCCCHHHHH-HHHHHHhcC-----------cc
Confidence 456789999999999999999986522 2232233220 01111121211 111111000 01
Q ss_pred ccceEEEEEecCC--CHHHHHHHHhccCCCCCCCEEEEEeCchhhh-hhc-CCCeEEEecCCChhhHHHHHHHHhhcCCC
Q 041551 241 ARKMVLLVFDDVN--NPRQIESLIGHLDHLASGSRVIITTRDKQVL-KNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGH 316 (808)
Q Consensus 241 ~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 316 (808)
.+++-++|+|+++ +.+.++.++..+.....++.+|++|.+.+.. ... .....+++.+++.++..+.+.+...
T Consensus 91 ~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~---- 166 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN---- 166 (313)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc----
Confidence 2344556666654 5677899999988878889998888766432 211 2246889999999999888866541
Q ss_pred CCchHHHHHHHHHHHhcCchhhHH
Q 041551 317 LDSSYTELTDKAIKYAQGVPLALK 340 (808)
Q Consensus 317 ~~~~~~~~~~~i~~~~~glPLal~ 340 (808)
....+.++.++.+++|.|..+.
T Consensus 167 --~~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 167 --DIKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHH
Confidence 1123446788999999886544
No 81
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00054 Score=77.70 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=92.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc---------------------cCceEEEecchhhhhccCHHHHHHHHHhhHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH---------------------FEGSYFAQNVREAEETGGIKDLQKELLSDVL 225 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~---------------------F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 225 (808)
.+.+.++|+.|+||||+|+.+++.+... |...+.+.. +...++
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDA----As~~~V------------ 100 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDA----ASRTKV------------ 100 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecc----cccCCH------------
Confidence 4567899999999999999999865321 111111111 000111
Q ss_pred cCcccccHHHHHHH-----HccceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEeCchh-hhhh-cCCCeEEEec
Q 041551 226 NDRILRDVRSQLNR-----LARKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITTRDKQ-VLKN-CWAGQIYQMK 296 (808)
Q Consensus 226 ~~~~~~~~~~l~~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~l~ 296 (808)
+.++.+.+. ..+++-++|+|+|+.. ...+.++..+.....+.++|++|.+.. +... ......+++.
T Consensus 101 -----ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFk 175 (702)
T PRK14960 101 -----EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLR 175 (702)
T ss_pred -----HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeecc
Confidence 112222221 1356678999999853 567777777765556677877776543 2111 1234688999
Q ss_pred CCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhh
Q 041551 297 ELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLA 338 (808)
Q Consensus 297 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 338 (808)
+++.++..+.+.+.+-... .....+....|++.++|-+-.
T Consensus 176 pLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 176 PLAVDEITKHLGAILEKEQ--IAADQDAIWQIAESAQGSLRD 215 (702)
T ss_pred CCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 9999999999888773322 233455678899999987643
No 82
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00051 Score=76.80 Aligned_cols=101 Identities=19% Similarity=0.165 Sum_probs=63.8
Q ss_pred cceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEeCc-hhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITTRD-KQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+++-++|+|+++.. +..+.++..+........+|++|.+ ..+.... .....+++.+++.++....+...+....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-- 193 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-- 193 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC--
Confidence 46679999999754 4466676666544444444444443 3332222 2346889999999999998888774322
Q ss_pred CchHHHHHHHHHHHhc-CchhhHHHHhh
Q 041551 318 DSSYTELTDKAIKYAQ-GVPLALKVLGC 344 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~-glPLal~~~~~ 344 (808)
..-..+....|++.++ +++.|+..+..
T Consensus 194 i~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 194 IEIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 2233456778888775 45677666654
No 83
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.05 E-value=9e-05 Score=82.63 Aligned_cols=165 Identities=13% Similarity=0.196 Sum_probs=99.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhccc--CceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHF--EGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMV 245 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~ 245 (808)
.-+.|+|..|.|||.|++++++.+.... ..++++.. .++...+...+... ...++.+++.+++ .-
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~----------~~f~~~~~~~l~~~--~~~~~~~~~~~~~-~d 208 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG----------DEFARKAVDILQKT--HKEIEQFKNEICQ-ND 208 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHHHh--hhHHHHHHHHhcc-CC
Confidence 3478999999999999999999765433 23445541 12333333222211 0223444444443 45
Q ss_pred EEEEecCCCH----HHHHHHHhccCC-CCCCCEEEEEeCchh---------hhhhcCCCeEEEecCCChhhHHHHHHHHh
Q 041551 246 LLVFDDVNNP----RQIESLIGHLDH-LASGSRVIITTRDKQ---------VLKNCWAGQIYQMKELVYTDAQKLFSQYA 311 (808)
Q Consensus 246 LlVlDdv~~~----~~~~~l~~~l~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 311 (808)
+||+||+... ...+.+...+.. ...|..||+|+.... +...+...-++++++++.++-.+++.+++
T Consensus 209 vLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 209 VLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHH
Confidence 7889999642 222333322211 134557888876442 22223345678999999999999999888
Q ss_pred hcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhh
Q 041551 312 FRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCY 345 (808)
Q Consensus 312 ~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~ 345 (808)
-.......-.++....|++.++|.|-.+..+...
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 4322111344677888999999999877655543
No 84
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.05 E-value=4.3e-05 Score=78.25 Aligned_cols=124 Identities=19% Similarity=0.377 Sum_probs=80.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
++.+.+||++|.||||||+.++..-+.+ ...||..........+++.+.++.-. ...+..+|..
T Consensus 162 ipSmIlWGppG~GKTtlArlia~tsk~~--SyrfvelSAt~a~t~dvR~ife~aq~--------------~~~l~krkTi 225 (554)
T KOG2028|consen 162 IPSMILWGPPGTGKTTLARLIASTSKKH--SYRFVELSATNAKTNDVRDIFEQAQN--------------EKSLTKRKTI 225 (554)
T ss_pred CCceEEecCCCCchHHHHHHHHhhcCCC--ceEEEEEeccccchHHHHHHHHHHHH--------------HHhhhcceeE
Confidence 6678899999999999999999854443 24455533222333344444332211 1235678899
Q ss_pred EEEecCCC--HHHHHHHHhccCCCCCCCEEEE--EeCchhhh---hhcCCCeEEEecCCChhhHHHHHHH
Q 041551 247 LVFDDVNN--PRQIESLIGHLDHLASGSRVII--TTRDKQVL---KNCWAGQIYQMKELVYTDAQKLFSQ 309 (808)
Q Consensus 247 lVlDdv~~--~~~~~~l~~~l~~~~~gs~Iii--TTR~~~v~---~~~~~~~~~~l~~L~~~ea~~Lf~~ 309 (808)
|.+|.|.. ..|-+.+++. ...|.-++| ||-++..- .......++-++.|+.++-..++.+
T Consensus 226 lFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 226 LFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred EEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 99999964 3445555544 456877777 77776431 1122347899999999999998887
No 85
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.04 E-value=3.2e-05 Score=75.63 Aligned_cols=149 Identities=18% Similarity=0.242 Sum_probs=83.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
+..+.+||++|+||||||.-+++.....|. +++.. ......++.. +...++ ++-+
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg~-~i~k~~dl~~--------------------il~~l~-~~~I 104 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSGP-AIEKAGDLAA--------------------ILTNLK-EGDI 104 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EE---EEECC-C--SCHHHHH--------------------HHHT---TT-E
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeE---eccch-hhhhHHHHHH--------------------HHHhcC-CCcE
Confidence 667889999999999999999998877663 22210 0011111111 112222 3457
Q ss_pred EEEecCCC--HHHHHHHHhccCCC--------CCC-----------CEEEEEeCchhhhhhcC--CCeEEEecCCChhhH
Q 041551 247 LVFDDVNN--PRQIESLIGHLDHL--------ASG-----------SRVIITTRDKQVLKNCW--AGQIYQMKELVYTDA 303 (808)
Q Consensus 247 lVlDdv~~--~~~~~~l~~~l~~~--------~~g-----------s~IiiTTR~~~v~~~~~--~~~~~~l~~L~~~ea 303 (808)
|.+|.+.. ..+-+.+.+...++ +++ +-|=.|||...+..... ...+.+++..+.+|-
T Consensus 105 LFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el 184 (233)
T PF05496_consen 105 LFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEEL 184 (233)
T ss_dssp EEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHH
T ss_pred EEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHH
Confidence 77899975 34445555543221 222 22445888765543332 234568999999999
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHH
Q 041551 304 QKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVL 342 (808)
Q Consensus 304 ~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 342 (808)
.+...+.+. .-..+-..+.+.+|++.+.|-|--..-+
T Consensus 185 ~~Iv~r~a~--~l~i~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 185 AKIVKRSAR--ILNIEIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp HHHHHHCCH--CTT-EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred HHHHHHHHH--HhCCCcCHHHHHHHHHhcCCChHHHHHH
Confidence 999987763 2234455678999999999999654433
No 86
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.03 E-value=0.0003 Score=76.25 Aligned_cols=170 Identities=14% Similarity=0.120 Sum_probs=90.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc-Cc-eEEEecchhhhhccCHHHHHH-----HHHhhH--hcCcccccHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF-EG-SYFAQNVREAEETGGIKDLQK-----ELLSDV--LNDRILRDVRSQL 237 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F-~~-~~~~~~~~~~~~~~~~~~l~~-----~ll~~~--~~~~~~~~~~~l~ 237 (808)
.+.+.++|.+|+||||+|+.+++.+...- .. .+++... +.... ....+.. ..+... ......+.++.+.
T Consensus 36 ~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (337)
T PRK12402 36 LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVA-DFFDQ-GKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVL 113 (337)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechh-hhhhc-chhhhhcCcchhhhhhhhhhhccchHHHHHHHH
Confidence 34578999999999999999998764332 22 2333321 11000 0000000 000000 0000011122221
Q ss_pred HHH------ccceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEecCCChhhHHHHH
Q 041551 238 NRL------ARKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMKELVYTDAQKLF 307 (808)
Q Consensus 238 ~~L------~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf 307 (808)
+.. ...+-+||+||++.. ...+.+...+......+++|+||.... +.... .....+++.+++.++..+.+
T Consensus 114 ~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l 193 (337)
T PRK12402 114 KEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVL 193 (337)
T ss_pred HHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHH
Confidence 111 133458999999753 334445444443445677888775432 22211 22357889999999999999
Q ss_pred HHHhhcCCCCCchHHHHHHHHHHHhcCchhhHH
Q 041551 308 SQYAFRGGHLDSSYTELTDKAIKYAQGVPLALK 340 (808)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 340 (808)
...+-... ..-..+..+.+++.++|.+-.+.
T Consensus 194 ~~~~~~~~--~~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 194 ESIAEAEG--VDYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred HHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 88763322 12345677888899988765443
No 87
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.02 E-value=4.5e-05 Score=83.32 Aligned_cols=148 Identities=16% Similarity=0.249 Sum_probs=84.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~ 245 (808)
.+-+.++|++|+|||++|++++++....|-... . ..+....... ....+..+.+.. ...+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~-----~--------~~l~~~~~g~-----~~~~i~~~f~~a~~~~p~ 217 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV-----G--------SELVRKYIGE-----GARLVREIFELAKEKAPS 217 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecc-----h--------HHHHHHhhhH-----HHHHHHHHHHHHHhcCCc
Confidence 456889999999999999999997765432111 0 0111111111 001122222222 24568
Q ss_pred EEEEecCCCH-------------H---HHHHHHhccCCC--CCCCEEEEEeCchhhhhh-----cCCCeEEEecCCChhh
Q 041551 246 LLVFDDVNNP-------------R---QIESLIGHLDHL--ASGSRVIITTRDKQVLKN-----CWAGQIYQMKELVYTD 302 (808)
Q Consensus 246 LlVlDdv~~~-------------~---~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~e 302 (808)
+|++|+++.. + .+..++..+... ..+.+||.||...+.... ...+..+.++..+.++
T Consensus 218 il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~ 297 (364)
T TIGR01242 218 IIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEG 297 (364)
T ss_pred EEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHH
Confidence 9999998753 1 233333333221 246678888875543221 1235678999999999
Q ss_pred HHHHHHHHhhcCCCCC-chHHHHHHHHHHHhcCch
Q 041551 303 AQKLFSQYAFRGGHLD-SSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 303 a~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~~~glP 336 (808)
..++|..++.+..... .. ...+++.+.|..
T Consensus 298 r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 298 RLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 9999998874433222 12 345666676653
No 88
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.00 E-value=7.8e-05 Score=83.02 Aligned_cols=154 Identities=15% Similarity=0.222 Sum_probs=92.3
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccC--ceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFE--GSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~--~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
-+.|+|.+|+|||+||+++++.+...++ .++|+.. .++...+...+.. .....+++......-+
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~----------~~f~~~~~~~~~~----~~~~~f~~~~~~~~dv 197 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS----------EKFLNDLVDSMKE----GKLNEFREKYRKKVDV 197 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHhc----ccHHHHHHHHHhcCCE
Confidence 4899999999999999999998766543 3455542 1233333333221 1233444444445568
Q ss_pred EEEecCCCH---H----HHHHHHhccCCCCCCCEEEEEeC-chhhh--------hhcCCCeEEEecCCChhhHHHHHHHH
Q 041551 247 LVFDDVNNP---R----QIESLIGHLDHLASGSRVIITTR-DKQVL--------KNCWAGQIYQMKELVYTDAQKLFSQY 310 (808)
Q Consensus 247 lVlDdv~~~---~----~~~~l~~~l~~~~~gs~IiiTTR-~~~v~--------~~~~~~~~~~l~~L~~~ea~~Lf~~~ 310 (808)
|++||++.. . .+-.+...+. ..|..||+||. .+.-. ..+....++++++.+.++-.+++.+.
T Consensus 198 LlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 198 LLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred EEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 999999742 1 1222222222 23557888875 33221 11233457899999999999999888
Q ss_pred hhcCCCCCchHHHHHHHHHHHhcCchhhHH
Q 041551 311 AFRGGHLDSSYTELTDKAIKYAQGVPLALK 340 (808)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 340 (808)
+-... ..-..++...|++.+.|.--.+.
T Consensus 276 ~~~~~--~~l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 276 LEIEH--GELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHhcC--CCCCHHHHHHHHhccccCHHHHH
Confidence 74222 22335667788888877654443
No 89
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00018 Score=81.24 Aligned_cols=97 Identities=11% Similarity=0.116 Sum_probs=65.1
Q ss_pred ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeC-chhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCC
Q 041551 241 ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTR-DKQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGH 316 (808)
Q Consensus 241 ~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR-~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 316 (808)
.++.-++|||+++. ....+.|+..+......+++|++|. ...+...+ .-...+.++.++.++..+.+.+.+....
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg- 200 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG- 200 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-
Confidence 34667899999985 4567888887766555666555554 44443322 1236889999999999999887763222
Q ss_pred CCchHHHHHHHHHHHhcCchhhH
Q 041551 317 LDSSYTELTDKAIKYAQGVPLAL 339 (808)
Q Consensus 317 ~~~~~~~~~~~i~~~~~glPLal 339 (808)
.....+..+.|++.++|.|...
T Consensus 201 -i~~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 201 -IAHEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHH
Confidence 2223455678899999988543
No 90
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.0005 Score=74.37 Aligned_cols=95 Identities=11% Similarity=0.093 Sum_probs=65.0
Q ss_pred cceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+.+.++|+|+++. ....+.++..+.....++.+|++|.+.+ +.... .....+.+.+++.++..+++..... .
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~---~- 215 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP---D- 215 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc---c-
Confidence 4667899999974 5567777777765556777777776654 33222 2346889999999999999987641 1
Q ss_pred CchHHHHHHHHHHHhcCchhhHHHH
Q 041551 318 DSSYTELTDKAIKYAQGVPLALKVL 342 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glPLal~~~ 342 (808)
...+....+++.++|.|+....+
T Consensus 216 --~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 216 --LPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11122367899999999865444
No 91
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.98 E-value=5.1e-05 Score=70.89 Aligned_cols=105 Identities=19% Similarity=0.162 Sum_probs=56.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+.+.|+|.+|+|||++|+++++.+...-..++++... ..... ....... ... ............++.+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~-~~~~~---~~~~~~~-~~~------~~~~~~~~~~~~~~~~ 87 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS-DLLEG---LVVAELF-GHF------LVRLLFELAEKAKPGV 87 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh-hhhhh---hHHHHHh-hhh------hHhHHHHhhccCCCeE
Confidence 45788999999999999999999775433444555421 11110 0000000 000 0001111122456789
Q ss_pred EEEecCCCH--HH---HHHHHhccCCC---CCCCEEEEEeCchh
Q 041551 247 LVFDDVNNP--RQ---IESLIGHLDHL---ASGSRVIITTRDKQ 282 (808)
Q Consensus 247 lVlDdv~~~--~~---~~~l~~~l~~~---~~gs~IiiTTR~~~ 282 (808)
+|+||++.. .. +..+....... ..+..||+||....
T Consensus 88 lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 88 LFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred EEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 999999853 22 33333332221 36778888888653
No 92
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00039 Score=79.57 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=62.4
Q ss_pred cceEEEEEecCCCHH--HHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNNPR--QIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~~~--~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+++-++|||+++... ..+.|+..+......+++|++|.+.. +.... .....+++..++.++..+.+.+.+-...
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-- 195 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-- 195 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC--
Confidence 466789999998643 45666666654445667777665442 22111 1225678889999999999888773322
Q ss_pred CchHHHHHHHHHHHhcCchhhH
Q 041551 318 DSSYTELTDKAIKYAQGVPLAL 339 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glPLal 339 (808)
..-..+....|++.++|.+.-+
T Consensus 196 i~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 196 IAYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred CCcCHHHHHHHHHHhCCCHHHH
Confidence 2234566788999999887443
No 93
>PRK06620 hypothetical protein; Validated
Probab=97.97 E-value=4.4e-05 Score=76.31 Aligned_cols=133 Identities=12% Similarity=0.073 Sum_probs=79.8
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLL 247 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~Ll 247 (808)
+.+.|||++|+|||+|++.+++.... .++.... . .. +.. +..-++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~~-----~-----~~-------------------~~~-~~~d~l 89 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDIF-----F-----NE-------------------EIL-EKYNAF 89 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchhh-----h-----ch-------------------hHH-hcCCEE
Confidence 56899999999999999998775422 2222100 0 00 011 123468
Q ss_pred EEecCCCHHH--HHHHHhccCCCCCCCEEEEEeCchhh-------hhhcCCCeEEEecCCChhhHHHHHHHHhhcCCCCC
Q 041551 248 VFDDVNNPRQ--IESLIGHLDHLASGSRVIITTRDKQV-------LKNCWAGQIYQMKELVYTDAQKLFSQYAFRGGHLD 318 (808)
Q Consensus 248 VlDdv~~~~~--~~~l~~~l~~~~~gs~IiiTTR~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 318 (808)
++||++..++ +-.+...+. ..|..||+|++.... ...+....+++++++++++-.+++.+.+-.. .-
T Consensus 90 liDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~--~l 165 (214)
T PRK06620 90 IIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS--SV 165 (214)
T ss_pred EEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc--CC
Confidence 8899985432 223322222 346789999875532 2223345689999999999888887776321 12
Q ss_pred chHHHHHHHHHHHhcCchhhH
Q 041551 319 SSYTELTDKAIKYAQGVPLAL 339 (808)
Q Consensus 319 ~~~~~~~~~i~~~~~glPLal 339 (808)
.-.+++.+-|++.+.|---.+
T Consensus 166 ~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 166 TISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred CCCHHHHHHHHHHccCCHHHH
Confidence 233556677777776654433
No 94
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.97 E-value=3.2e-07 Score=101.16 Aligned_cols=165 Identities=24% Similarity=0.281 Sum_probs=74.7
Q ss_pred CCceeEEEecCCCCCCc---ccCcccceEeecCCCCcccccch-------hhc---ccccceeccCCCCCCCCCC-CCCC
Q 041551 489 FAEVRHLEWARCPLKTL---NICAEKLVSLKMPRSKVQQLWDD-------VQD---LVNLKEIDLSRSESLTKLP-DLSR 554 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~-------~~~---l~~L~~L~L~~n~~~~~~p-~~~~ 554 (808)
+..||+|.+.+|++... ...-..|+.|.- +|.+..+-.- +.+ -..|...+.++|.+ ..+. .+.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L-~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL-VLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH-HhHHHHHHH
Confidence 88999999999997664 111112222211 1111111000 000 11244444455432 2222 2444
Q ss_pred CCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC--CCCCCCEEeccCCCCCCcccccccc-cccEEE
Q 041551 555 AKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITSC-HMWRLE 631 (808)
Q Consensus 555 l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~-~L~~L~ 631 (808)
++.|+.|+|++|+.. ... .+..|++|++|||++ |.+..+|... +++ |+.|+|++| .++.+..+-.. .|+.||
T Consensus 186 l~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLRNN-ALTTLRGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhh-hhH-HHHhccccccccccc-chhccccccchhhhh-heeeeeccc-HHHhhhhHHhhhhhhccc
Confidence 555555555555322 222 455555555555555 2455555432 222 555555555 22222222111 155555
Q ss_pred ecccCCeecC--cccccCCcCcEEEeecCCC
Q 041551 632 LTKVGIKELP--SSIECLSNLQYLYIWDCSE 660 (808)
Q Consensus 632 L~~n~i~~lp--~~~~~l~~L~~L~L~~n~~ 660 (808)
+++|-|.... .-++.|..|+.|+|.||++
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5555554321 1145566666666666664
No 95
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00029 Score=79.61 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=92.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc---------------------cCceEEEecchhhhhccCHHHHHHHHHhhHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH---------------------FEGSYFAQNVREAEETGGIKDLQKELLSDVL 225 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~---------------------F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 225 (808)
.+.+.++|+.|+||||+|+.+++.+... |...+.+.. ....+..++ +.++.
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida----as~~gvd~i-r~ii~--- 109 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA----ASRTGVEET-KEILD--- 109 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec----ccccCHHHH-HHHHH---
Confidence 3457899999999999999999865321 122222211 011111111 11111
Q ss_pred cCcccccHHHHHH-HHccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEE-EeCchhhhhhc-CCCeEEEecCCCh
Q 041551 226 NDRILRDVRSQLN-RLARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVII-TTRDKQVLKNC-WAGQIYQMKELVY 300 (808)
Q Consensus 226 ~~~~~~~~~~l~~-~L~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~Iii-TTR~~~v~~~~-~~~~~~~l~~L~~ 300 (808)
.+.. -..+++-++|+|+++. .+..+.|+..+......+++|+ ||....+.... .....+++++++.
T Consensus 110 ---------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~ 180 (546)
T PRK14957 110 ---------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180 (546)
T ss_pred ---------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCH
Confidence 1110 1235667999999984 4567788877776555666665 44433333221 2347899999999
Q ss_pred hhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCch-hhHHHH
Q 041551 301 TDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVP-LALKVL 342 (808)
Q Consensus 301 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~ 342 (808)
++..+.+.+.+-..+ .....+....|++.++|-+ -|+..+
T Consensus 181 ~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 181 ADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred HHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 998888887653221 2334556678899999855 344443
No 96
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.96 E-value=0.00043 Score=74.38 Aligned_cols=159 Identities=13% Similarity=0.152 Sum_probs=88.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+.+.++|.+|+||||+|+.++++.........++.. . .+...+...+...+ ....... ......+-+
T Consensus 38 ~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~-~-~~~~~~~~~~~~~i-~~~~~~~---------~~~~~~~~v 105 (319)
T PRK00440 38 MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL-N-ASDERGIDVIRNKI-KEFARTA---------PVGGAPFKI 105 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe-c-cccccchHHHHHHH-HHHHhcC---------CCCCCCceE
Confidence 3347999999999999999999875432111112211 0 01111111111111 1100000 000124568
Q ss_pred EEEecCCCH--HHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCCCchHH
Q 041551 247 LVFDDVNNP--RQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHLDSSYT 322 (808)
Q Consensus 247 lVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~ 322 (808)
+++|+++.. +..+.+...+......+++|+++.... +.... .....+++++++.++....+...+.... ..-..
T Consensus 106 viiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~--~~i~~ 183 (319)
T PRK00440 106 IFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEG--IEITD 183 (319)
T ss_pred EEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcC--CCCCH
Confidence 999998743 344556555554455677777764322 21111 1234689999999999998888774322 22335
Q ss_pred HHHHHHHHHhcCchhhH
Q 041551 323 ELTDKAIKYAQGVPLAL 339 (808)
Q Consensus 323 ~~~~~i~~~~~glPLal 339 (808)
+.+..+++.++|.+--+
T Consensus 184 ~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 184 DALEAIYYVSEGDMRKA 200 (319)
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 66788899999877553
No 97
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00059 Score=76.62 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=65.3
Q ss_pred cceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEE-EeCchhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVII-TTRDKQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~Iii-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+++-++|+|+++. ...++.++..+....+.+.+|+ ||+...+.... .....+++.+++.++..+.+...+-...
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg-- 204 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN-- 204 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC--
Confidence 5667899999986 4557888777765555666554 55555554332 2336789999999999999998884322
Q ss_pred CchHHHHHHHHHHHhcCchhh
Q 041551 318 DSSYTELTDKAIKYAQGVPLA 338 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glPLa 338 (808)
..-..+....|++.++|.+--
T Consensus 205 i~ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 205 LKTDIEALRIIAYKSEGSARD 225 (507)
T ss_pred CCCCHHHHHHHHHHcCCCHHH
Confidence 222345667899999987643
No 98
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.93 E-value=2.1e-07 Score=102.53 Aligned_cols=174 Identities=20% Similarity=0.182 Sum_probs=120.7
Q ss_pred ccCcccceEeecCCCCcccccchhhcc-cccceeccCCCC------C---CCCCCCCCCCCCCcEEecCCCCCCcccccc
Q 041551 506 NICAEKLVSLKMPRSKVQQLWDDVQDL-VNLKEIDLSRSE------S---LTKLPDLSRAKNLEILWLRGCLSLVETHST 575 (808)
Q Consensus 506 ~~~~~~L~~L~L~~n~l~~l~~~~~~l-~~L~~L~L~~n~------~---~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~ 575 (808)
.+-+..|+.|.|.++.+... .++..+ .+|+.|.-.+.- + .+++.+--....|.+.+.+.| .+..+..+
T Consensus 105 ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~mD~S 182 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVLMDES 182 (1096)
T ss_pred eccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHhHHHH
Confidence 56678899999999988764 232222 234444332210 0 111111111345666677776 66678888
Q ss_pred ccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccc--cccccEEEecccCCeecCcccccCCcCcEE
Q 041551 576 IQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEIT--SCHMWRLELTKVGIKELPSSIECLSNLQYL 653 (808)
Q Consensus 576 ~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~--~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L 653 (808)
+.-++.|+.|||++| +.........++.|++|||++| .+..+|... ++.|+.|.|++|.++++- ++.+|.+|+.|
T Consensus 183 Lqll~ale~LnLshN-k~~~v~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~L 259 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHN-KFTKVDNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGL 259 (1096)
T ss_pred HHHHHHhhhhccchh-hhhhhHHHHhcccccccccccc-hhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhhcc
Confidence 999999999999996 4555553338899999999998 567777654 334999999999999884 58999999999
Q ss_pred EeecCCCccccc-ccccCCCCCCEEEeecCCC
Q 041551 654 YIWDCSELESIS-SSIFKLNSLESIDISNCSN 684 (808)
Q Consensus 654 ~L~~n~~l~~lp-~~~~~l~~L~~L~l~~c~~ 684 (808)
|++.|-+.+.-- ..+..|..|+.|.|.+||.
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 999987654211 1256678899999999874
No 99
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.93 E-value=0.00026 Score=78.66 Aligned_cols=151 Identities=13% Similarity=0.155 Sum_probs=86.9
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLL 247 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~Ll 247 (808)
.-+.|+|..|+|||+||+++++.+......++++.. ..+...+...+.. .....+++.++ ..-+|
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~----------~~f~~~~~~~l~~----~~~~~f~~~~~-~~dvL 206 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS----------ELFTEHLVSAIRS----GEMQRFRQFYR-NVDAL 206 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH----------HHHHHHHHHHHhc----chHHHHHHHcc-cCCEE
Confidence 457899999999999999999987655455566652 1122222222221 11233444443 34578
Q ss_pred EEecCCCHH----HHHHHHhccCC-CCCCCEEEEEeCch-h--------hhhhcCCCeEEEecCCChhhHHHHHHHHhhc
Q 041551 248 VFDDVNNPR----QIESLIGHLDH-LASGSRVIITTRDK-Q--------VLKNCWAGQIYQMKELVYTDAQKLFSQYAFR 313 (808)
Q Consensus 248 VlDdv~~~~----~~~~l~~~l~~-~~~gs~IiiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 313 (808)
++||+.... ..+.+...+.. ...|..||+||... . +...+.....+++++++.++-.+++.+.+-.
T Consensus 207 iIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~ 286 (445)
T PRK12422 207 FIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA 286 (445)
T ss_pred EEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 889986431 12222222110 02356788888543 1 1222334568899999999999999887733
Q ss_pred CCCCCchHHHHHHHHHHHhcCc
Q 041551 314 GGHLDSSYTELTDKAIKYAQGV 335 (808)
Q Consensus 314 ~~~~~~~~~~~~~~i~~~~~gl 335 (808)
.. ..-..++..-|++.+.|.
T Consensus 287 ~~--~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 287 LS--IRIEETALDFLIEALSSN 306 (445)
T ss_pred cC--CCCCHHHHHHHHHhcCCC
Confidence 22 222345555566666543
No 100
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00066 Score=74.77 Aligned_cols=161 Identities=17% Similarity=0.151 Sum_probs=91.2
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCc---eEEEecchhhhhccCHHHHHHHHHhhH---hc--CcccccHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEG---SYFAQNVREAEETGGIKDLQKELLSDV---LN--DRILRDVRSQLNR 239 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~---~~~~~~~~~~~~~~~~~~l~~~ll~~~---~~--~~~~~~~~~l~~~ 239 (808)
+.+.++|..|+||||+|+.+++.+...-.. .+..+ .....+.......+ .. ....+.++.+.+.
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C--------~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~ 112 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC--------TSCLEITKGISSDVLEIDAASNRGIENIRELRDN 112 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC--------cHHHHHHccCCccceeechhhcccHHHHHHHHHH
Confidence 457899999999999999999865432110 00000 00001100000000 00 0001122222222
Q ss_pred -----HccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEE-EeCchhhhhhc-CCCeEEEecCCChhhHHHHHHHH
Q 041551 240 -----LARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVII-TTRDKQVLKNC-WAGQIYQMKELVYTDAQKLFSQY 310 (808)
Q Consensus 240 -----L~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~Iii-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 310 (808)
..++.-++|+|+++. .+.++.++..+........+|. ||....+.... .....|.+.+++.++..+.+.+.
T Consensus 113 l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i 192 (484)
T PRK14956 113 VKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKL 192 (484)
T ss_pred HHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHH
Confidence 235667999999985 4568888777765444555454 44434443322 22367999999999999888887
Q ss_pred hhcCCCCCchHHHHHHHHHHHhcCchhh
Q 041551 311 AFRGGHLDSSYTELTDKAIKYAQGVPLA 338 (808)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~~~glPLa 338 (808)
+-..+ ..-..+....|++.++|.+--
T Consensus 193 ~~~Eg--i~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 193 CKIEN--VQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHHcC--CCCCHHHHHHHHHHcCChHHH
Confidence 63221 233456678899999998743
No 101
>PRK04195 replication factor C large subunit; Provisional
Probab=97.92 E-value=0.00037 Score=79.03 Aligned_cols=152 Identities=15% Similarity=0.198 Sum_probs=88.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHc-cceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLA-RKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~-~~~~ 245 (808)
.+.+.|+|++|+||||+|+.+++++. |+. +.+. .+...... ....+........ .+. .++-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln----asd~r~~~-~i~~~i~~~~~~~----------sl~~~~~k 100 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN----ASDQRTAD-VIERVAGEAATSG----------SLFGARRK 100 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc----ccccccHH-HHHHHHHHhhccC----------cccCCCCe
Confidence 56789999999999999999999763 222 2222 11111111 2222222111100 111 3678
Q ss_pred EEEEecCCCH------HHHHHHHhccCCCCCCCEEEEEeCchh-hhh-h-cCCCeEEEecCCChhhHHHHHHHHhhcCCC
Q 041551 246 LLVFDDVNNP------RQIESLIGHLDHLASGSRVIITTRDKQ-VLK-N-CWAGQIYQMKELVYTDAQKLFSQYAFRGGH 316 (808)
Q Consensus 246 LlVlDdv~~~------~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 316 (808)
+||+|+++.. ..++.+...+. ..+..||+|+.+.. ... . ......+++.+++.++....+...+.....
T Consensus 101 vIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi 178 (482)
T PRK04195 101 LILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGI 178 (482)
T ss_pred EEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 9999999763 23555555544 23445666664432 111 1 123467899999999999988887743222
Q ss_pred CCchHHHHHHHHHHHhcCchhhHH
Q 041551 317 LDSSYTELTDKAIKYAQGVPLALK 340 (808)
Q Consensus 317 ~~~~~~~~~~~i~~~~~glPLal~ 340 (808)
.-..+....|++.++|-.-.+.
T Consensus 179 --~i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 179 --ECDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHH
Confidence 2235677889999988655443
No 102
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.91 E-value=0.00033 Score=76.59 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=66.3
Q ss_pred cceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+++-++|+|+++.. ...+.+...+......+.+|++|.+.+ +.... .....++..+++.++..+.+..++-....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~- 194 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI- 194 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 45568899998754 556777777765556677777765544 22221 22357889999999999998887743222
Q ss_pred CchHHHHHHHHHHHhcCchhhHHHHh
Q 041551 318 DSSYTELTDKAIKYAQGVPLALKVLG 343 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glPLal~~~~ 343 (808)
.-..+.+..+++.++|.|..+....
T Consensus 195 -~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 195 -KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred -CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 2234677888999999886654433
No 103
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.90 E-value=0.00023 Score=78.99 Aligned_cols=156 Identities=14% Similarity=0.187 Sum_probs=91.5
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccC--ceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFE--GSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMV 245 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~--~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~ 245 (808)
..+.|+|..|+|||.||+++++.+..+.+ .++|+.. ..+...+...+... ....+.+.+++ .-
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~----------~~~~~~~~~~~~~~----~~~~~~~~~~~-~d 201 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS----------EKFTNDFVNALRNN----KMEEFKEKYRS-VD 201 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH----------HHHHHHHHHHHHcC----CHHHHHHHHHh-CC
Confidence 45789999999999999999998766543 3455542 11222222222211 23344444443 34
Q ss_pred EEEEecCCCHH----HHHHHHhccCC-CCCCCEEEEEeCchh-h--------hhhcCCCeEEEecCCChhhHHHHHHHHh
Q 041551 246 LLVFDDVNNPR----QIESLIGHLDH-LASGSRVIITTRDKQ-V--------LKNCWAGQIYQMKELVYTDAQKLFSQYA 311 (808)
Q Consensus 246 LlVlDdv~~~~----~~~~l~~~l~~-~~~gs~IiiTTR~~~-v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 311 (808)
+|||||++... ..+.+...+.. ...|..+|+||.... . ...+.....+++++.+.++-.+++.+.+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 78899997421 11223222211 123556888776432 1 1122233578999999999999999887
Q ss_pred hcCCCCCchHHHHHHHHHHHhcCchhhHH
Q 041551 312 FRGGHLDSSYTELTDKAIKYAQGVPLALK 340 (808)
Q Consensus 312 ~~~~~~~~~~~~~~~~i~~~~~glPLal~ 340 (808)
-.. ...-.++....|++.+.|..-.+.
T Consensus 282 ~~~--~~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 282 EEE--GLELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHc--CCCCCHHHHHHHHHhcCCCHHHHH
Confidence 432 222335667778888877665443
No 104
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.89 E-value=0.00012 Score=85.63 Aligned_cols=146 Identities=27% Similarity=0.385 Sum_probs=85.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH--ccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL--ARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L--~~~~ 244 (808)
...+.++|++|+||||||+.+++.....|. .+... ..++..+ +.. +....+.+ .+++
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-----~~~i~di-r~~------------i~~a~~~l~~~~~~ 110 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-----LAGVKDL-RAE------------VDRAKERLERHGKR 110 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-----hhhhHHH-HHH------------HHHHHHHhhhcCCc
Confidence 445789999999999999999987765542 22211 0111111 111 11111111 2467
Q ss_pred EEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEE--eCchh--hhhhc-CCCeEEEecCCChhhHHHHHHHHhhc----
Q 041551 245 VLLVFDDVNN--PRQIESLIGHLDHLASGSRVIIT--TRDKQ--VLKNC-WAGQIYQMKELVYTDAQKLFSQYAFR---- 313 (808)
Q Consensus 245 ~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiT--TR~~~--v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~---- 313 (808)
.+||||||+. ..+.+.+.+.+. .|+.++|+ |.+.. +.... ....++.+++++.++..+++.+.+-.
T Consensus 111 ~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~ 187 (725)
T PRK13341 111 TILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERG 187 (725)
T ss_pred eEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhh
Confidence 7999999974 455666765543 35555553 34331 11111 12357899999999999999876631
Q ss_pred -CCCCCchHHHHHHHHHHHhcCch
Q 041551 314 -GGHLDSSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 314 -~~~~~~~~~~~~~~i~~~~~glP 336 (808)
+.....-..+..+.|++.+.|..
T Consensus 188 ~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 188 YGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred cCCcccCCCHHHHHHHHHhCCCCH
Confidence 01122233566688888888864
No 105
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.87 E-value=2.3e-05 Score=83.15 Aligned_cols=87 Identities=17% Similarity=0.175 Sum_probs=58.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhc-ccCceEEEecchhhhhccCHHHHHHHHHhhHhcCc----cc-------ccHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISR-HFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDR----IL-------RDVRS 235 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~----~~-------~~~~~ 235 (808)
.-.+|+|.+|+||||||+++|+.+.. +|+..+|+..+++. ...+.++++.+...+.... .. ..++.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999997654 79999999876552 2467777777764322111 11 11111
Q ss_pred HHHH-HccceEEEEEecCCCHH
Q 041551 236 QLNR-LARKMVLLVFDDVNNPR 256 (808)
Q Consensus 236 l~~~-L~~~~~LlVlDdv~~~~ 256 (808)
.... -.+++++|++|++....
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHHH
Confidence 1111 25799999999997543
No 106
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00088 Score=74.64 Aligned_cols=149 Identities=16% Similarity=0.204 Sum_probs=92.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc---------------------ccCceEEEecchhhhhccCHHHHHHHHHhhHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR---------------------HFEGSYFAQNVREAEETGGIKDLQKELLSDVL 225 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~---------------------~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 225 (808)
.+.+.++|+.|+||||+|+.+++.+-. .+..++.+.. +...+..+
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida----as~~~vdd---------- 100 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA----ASNTSVDD---------- 100 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec----ccCCCHHH----------
Confidence 346889999999999999999875421 1222233321 11112211
Q ss_pred cCcccccHHHHHHH-----HccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCc-hhhhhhc-CCCeEEEec
Q 041551 226 NDRILRDVRSQLNR-----LARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRD-KQVLKNC-WAGQIYQMK 296 (808)
Q Consensus 226 ~~~~~~~~~~l~~~-----L~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~ 296 (808)
++.+.+. ..+++-++|+|+++. .+..+.++..+....+.+++|++|.+ ..+.... .....+++.
T Consensus 101 -------IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~ 173 (491)
T PRK14964 101 -------IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQ 173 (491)
T ss_pred -------HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecc
Confidence 1122221 124566899999974 44577777777665667777665543 3443322 234678999
Q ss_pred CCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhh
Q 041551 297 ELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLA 338 (808)
Q Consensus 297 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 338 (808)
+++.++..+.+.+.+.... ..-..+..+.|++.++|.+-.
T Consensus 174 ~l~~~el~~~L~~ia~~Eg--i~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 174 KIPTDKLVEHLVDIAKKEN--IEHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred cccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 9999999999988774322 233445677899999887753
No 107
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.001 Score=75.24 Aligned_cols=150 Identities=15% Similarity=0.189 Sum_probs=89.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc---------------------ccCceEEEecchhhhhccCHHHHHHHHHhhHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR---------------------HFEGSYFAQNVREAEETGGIKDLQKELLSDVL 225 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~---------------------~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 225 (808)
.+.+.++|+.|+||||+|+.+++.+-. .|...+.+.. ....++.+
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida----as~~~v~~---------- 103 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA----ASRTKVED---------- 103 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc----cccCCHHH----------
Confidence 345789999999999999999986532 1111222221 01111211
Q ss_pred cCcccccHHHHHHHH-----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCch-hhhhhc-CCCeEEEec
Q 041551 226 NDRILRDVRSQLNRL-----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDK-QVLKNC-WAGQIYQMK 296 (808)
Q Consensus 226 ~~~~~~~~~~l~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~ 296 (808)
++.+.+.+ .++.-++|+|+|+. .+..+.++..+......+++|++|.+. .+.... .....++++
T Consensus 104 -------iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~ 176 (509)
T PRK14958 104 -------TRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLA 176 (509)
T ss_pred -------HHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcC
Confidence 12222211 24566899999985 456777777776655667777665443 332221 123578899
Q ss_pred CCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhH
Q 041551 297 ELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLAL 339 (808)
Q Consensus 297 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal 339 (808)
+++.++..+.+...+-..+ ..-..+....|++.++|-+..+
T Consensus 177 ~l~~~~i~~~l~~il~~eg--i~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 177 QLPPLQIAAHCQHLLKEEN--VEFENAALDLLARAANGSVRDA 217 (509)
T ss_pred CCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCcHHHH
Confidence 9999988887776663222 2223455678889999877543
No 108
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.85 E-value=0.00016 Score=81.42 Aligned_cols=156 Identities=14% Similarity=0.180 Sum_probs=93.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCc--eEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEG--SYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMV 245 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~--~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~ 245 (808)
.-+.|+|.+|+|||+||+++++++..+++. +.|+.. ..+...+...+.. .....+.+.+++ .-
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~----------~~~~~~~~~~~~~----~~~~~~~~~~~~-~d 213 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS----------EKFTNDFVNALRN----NTMEEFKEKYRS-VD 213 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH----------HHHHHHHHHHHHc----CcHHHHHHHHhc-CC
Confidence 458899999999999999999988776533 445542 1112222222211 123344445543 45
Q ss_pred EEEEecCCCH----HHHHHHHhccCC-CCCCCEEEEEeCchh---------hhhhcCCCeEEEecCCChhhHHHHHHHHh
Q 041551 246 LLVFDDVNNP----RQIESLIGHLDH-LASGSRVIITTRDKQ---------VLKNCWAGQIYQMKELVYTDAQKLFSQYA 311 (808)
Q Consensus 246 LlVlDdv~~~----~~~~~l~~~l~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 311 (808)
+|||||++.. ...+.+...+.. ...|..||+||.... +...+....++++++.+.++-.+++.+.+
T Consensus 214 lLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 214 VLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 8899999642 112233222111 123556888876542 12223344688999999999999999988
Q ss_pred hcCCCCCchHHHHHHHHHHHhcCchhhHH
Q 041551 312 FRGGHLDSSYTELTDKAIKYAQGVPLALK 340 (808)
Q Consensus 312 ~~~~~~~~~~~~~~~~i~~~~~glPLal~ 340 (808)
-.. ...-.+++.+.|++.+.|..-.+.
T Consensus 294 ~~~--~~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 294 EEE--GIDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHc--CCCCCHHHHHHHHcCcCCCHHHHH
Confidence 432 223345667888888887765443
No 109
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00032 Score=76.53 Aligned_cols=147 Identities=13% Similarity=0.142 Sum_probs=89.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc--------------------CceEEEecchhhhhccCHHHHHHHHHhhHhc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF--------------------EGSYFAQNVREAEETGGIKDLQKELLSDVLN 226 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F--------------------~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~ 226 (808)
.+.+.++|+.|+|||++|+.++..+-... +...++... .....+
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~---~~~i~i------------- 99 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPE---GLSIGV------------- 99 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccc---cccCCH-------------
Confidence 56688999999999999999988543221 112222100 000111
Q ss_pred CcccccHHHHHHHH-----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCch-hhhhhc-CCCeEEEecC
Q 041551 227 DRILRDVRSQLNRL-----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDK-QVLKNC-WAGQIYQMKE 297 (808)
Q Consensus 227 ~~~~~~~~~l~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~ 297 (808)
+.++.+.+.. .+++-++|+|+++. ....+.++..+.....+..+|++|.+. .+.... .....+.+++
T Consensus 100 ----~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~ 175 (394)
T PRK07940 100 ----DEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRT 175 (394)
T ss_pred ----HHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCC
Confidence 1122222222 24455788899985 345566777666555677676666654 343332 2246889999
Q ss_pred CChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHH
Q 041551 298 LVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALK 340 (808)
Q Consensus 298 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 340 (808)
++.++..+.+.... . ...+.+..++..++|.|....
T Consensus 176 ~~~~~i~~~L~~~~---~----~~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 176 PSVEAVAEVLVRRD---G----VDPETARRAARASQGHIGRAR 211 (394)
T ss_pred CCHHHHHHHHHHhc---C----CCHHHHHHHHHHcCCCHHHHH
Confidence 99999998887433 1 123557788999999986543
No 110
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.0028 Score=72.80 Aligned_cols=96 Identities=9% Similarity=0.128 Sum_probs=63.6
Q ss_pred cceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCc-hhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRD-KQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
++.-++|||+|+. .+..+.++..+.......++|++|.+ ..+.... .....++++.++.++..+.+.+.+...+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg-- 200 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN-- 200 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC--
Confidence 3456899999985 45677787777655556666655543 3333221 2347899999999999999888763322
Q ss_pred CchHHHHHHHHHHHhcCchhhH
Q 041551 318 DSSYTELTDKAIKYAQGVPLAL 339 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glPLal 339 (808)
.....+....|++.++|.+--+
T Consensus 201 i~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 201 VPAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 2223456788889998866443
No 111
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.001 Score=75.74 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=63.6
Q ss_pred cceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEeCch-hhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITTRDK-QVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+++-++|+|+++.. +..+.++..+......+.+|++|.+. .+.... .....+++++++.++..+.+.+.+-...
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-- 195 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-- 195 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--
Confidence 56679999999854 44677777776655566666655443 222111 1135789999999999988877663222
Q ss_pred CchHHHHHHHHHHHhcCchh-hHHHH
Q 041551 318 DSSYTELTDKAIKYAQGVPL-ALKVL 342 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glPL-al~~~ 342 (808)
.....+....|++.++|.+- |+..+
T Consensus 196 i~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 196 IPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22334566788999999764 44333
No 112
>PF14516 AAA_35: AAA-like domain
Probab=97.80 E-value=0.0029 Score=68.00 Aligned_cols=175 Identities=14% Similarity=0.176 Sum_probs=97.0
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchh-hhhccCHHHHHH----HHHhhHhcCccc------------
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVRE-AEETGGIKDLQK----ELLSDVLNDRIL------------ 230 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~-~~~~~~~~~l~~----~ll~~~~~~~~~------------ 230 (808)
..+.|.|+-.+|||+|..++.++....=-.+++++.-.- .....+.....+ .+..++.-....
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~ 111 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKI 111 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChh
Confidence 468899999999999999999876543223344442211 111233443333 333332211100
Q ss_pred ccHHHHHHHH---ccceEEEEEecCCCHHH----HHHHHhccC-C------CC-CCCEEEEEeCch--hhhhh-----cC
Q 041551 231 RDVRSQLNRL---ARKMVLLVFDDVNNPRQ----IESLIGHLD-H------LA-SGSRVIITTRDK--QVLKN-----CW 288 (808)
Q Consensus 231 ~~~~~l~~~L---~~~~~LlVlDdv~~~~~----~~~l~~~l~-~------~~-~gs~IiiTTR~~--~v~~~-----~~ 288 (808)
.....+.+.+ .+++.+|+||+|+..-. .+++...+. | .. ...-.+|..... ..... ..
T Consensus 112 ~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFN 191 (331)
T PF14516_consen 112 SCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFN 191 (331)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcc
Confidence 1112223322 25899999999975321 122322221 0 00 111122222211 11111 12
Q ss_pred CCeEEEecCCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhhcC
Q 041551 289 AGQIYQMKELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYLCG 348 (808)
Q Consensus 289 ~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~ 348 (808)
....+++++++.+|..+|..++-.. ......++|...+||+|.-+..++..+..
T Consensus 192 Ig~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 192 IGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred cccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3457899999999999998876421 12233889999999999999999999864
No 113
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=5.1e-06 Score=82.72 Aligned_cols=190 Identities=18% Similarity=0.193 Sum_probs=122.9
Q ss_pred eeEEEecCCCCCCc------ccCcccceEeecCCCCcccc---cchhhcccccceeccCCCCCCCCCCCC-CCCCCCcEE
Q 041551 492 VRHLEWARCPLKTL------NICAEKLVSLKMPRSKVQQL---WDDVQDLVNLKEIDLSRSESLTKLPDL-SRAKNLEIL 561 (808)
Q Consensus 492 Lr~L~l~~~~l~~l------~~~~~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~l~~L~~L 561 (808)
+..|.+.++.+.+. ......++.|+|.+|.|..- -.-+.+|+.|++|+|+.|.+...+..+ ..+.+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 33566677776665 34567899999999998743 334788999999999999876555443 467799999
Q ss_pred ecCCCCCC-ccccccccCCCCcCEEecCCCCCCCcCCC--c-C--CCCCCCEEeccCCC---------CCCccccccccc
Q 041551 562 WLRGCLSL-VETHSTIQYLNKLEDLDLDYCISLTSLPT--S-I--HSKHLKELSLRGCS---------NLKIFPEITSCH 626 (808)
Q Consensus 562 ~L~~n~~l-~~~p~~~~~l~~L~~L~l~~~~~l~~lp~--~-~--~l~~L~~L~L~~~~---------~l~~~p~~~~~~ 626 (808)
.|.|.... ......+..+++++.|.++.|+ +..+-. . . .-+.+.+|++.+|. ....||.
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn----- 200 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN----- 200 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc-----
Confidence 99885322 2233457788899999998863 332211 1 1 22455666665552 2223333
Q ss_pred ccEEEecccCCeecCc--ccccCCcCcEEEeecCCCccccc--ccccCCCCCCEEEeecCCCCccc
Q 041551 627 MWRLELTKVGIKELPS--SIECLSNLQYLYIWDCSELESIS--SSIFKLNSLESIDISNCSNLKRF 688 (808)
Q Consensus 627 L~~L~L~~n~i~~lp~--~~~~l~~L~~L~L~~n~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~l 688 (808)
+..+.+..|.++.... +...++.+..|+|+.+++ .+.- +.+.++++|..|.++++|.+..+
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i-dswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI-DSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhccccc-ccHHHHHHHcCCchhheeeccCCcccccc
Confidence 3446666676665432 355677777788877766 4332 23677888888888888766544
No 114
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00059 Score=72.72 Aligned_cols=152 Identities=14% Similarity=0.161 Sum_probs=92.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc---------------------cCceEEEecchhhhhccCHHHHHHHHHhhHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH---------------------FEGSYFAQNVREAEETGGIKDLQKELLSDVL 225 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~---------------------F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 225 (808)
.+.+.++|+.|+||||+|+.++..+--. .+...++.... .+....+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~-~~~~i~i------------ 88 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEE-ADKTIKV------------ 88 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccC-CCCCCCH------------
Confidence 4568899999999999999999864321 11222221100 0000011
Q ss_pred cCcccccHHHHHHHH-----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEec
Q 041551 226 NDRILRDVRSQLNRL-----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMK 296 (808)
Q Consensus 226 ~~~~~~~~~~l~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~ 296 (808)
+.++.+.+.+ .+++-++|+|+++. .+..+.++..+.....++.+|+||.+.. +.... .-...+.+.
T Consensus 89 -----d~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~ 163 (328)
T PRK05707 89 -----DQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACP 163 (328)
T ss_pred -----HHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCC
Confidence 2233333332 13344457799984 5667888877776666787877777763 33332 223678999
Q ss_pred CCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHH
Q 041551 297 ELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVL 342 (808)
Q Consensus 297 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 342 (808)
+++.+++.+.+..... ....+.+..++..++|.|+....+
T Consensus 164 ~~~~~~~~~~L~~~~~------~~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 164 LPSNEESLQWLQQALP------ESDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CcCHHHHHHHHHHhcc------cCChHHHHHHHHHcCCCHHHHHHH
Confidence 9999999998876531 112334567788999999754433
No 115
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=0.00039 Score=78.69 Aligned_cols=154 Identities=14% Similarity=0.220 Sum_probs=90.9
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccC--ceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFE--GSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~--~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+.|+|..|.|||.|++++++.....+. .++|+.. .++...+...+.. .....+++++.+ .=+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita----------eef~~el~~al~~----~~~~~f~~~y~~-~DL 380 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS----------EEFTNEFINSIRD----GKGDSFRRRYRE-MDI 380 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH----------HHHHHHHHHHHHh----ccHHHHHHHhhc-CCE
Confidence 4889999999999999999998765432 3455542 2223333222221 123334444443 357
Q ss_pred EEEecCCCH---HHH-HHHHhccCC-CCCCCEEEEEeCch---------hhhhhcCCCeEEEecCCChhhHHHHHHHHhh
Q 041551 247 LVFDDVNNP---RQI-ESLIGHLDH-LASGSRVIITTRDK---------QVLKNCWAGQIYQMKELVYTDAQKLFSQYAF 312 (808)
Q Consensus 247 lVlDdv~~~---~~~-~~l~~~l~~-~~~gs~IiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 312 (808)
|||||++.. +.+ +.+...+.. ...|..|||||+.. .+...+...-+++|+..+.+.-.+++.+++-
T Consensus 381 LlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 381 LLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred EEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 888999642 111 222222211 13356788888763 1223334567899999999999999998874
Q ss_pred cCCCCCchHHHHHHHHHHHhcCchhhH
Q 041551 313 RGGHLDSSYTELTDKAIKYAQGVPLAL 339 (808)
Q Consensus 313 ~~~~~~~~~~~~~~~i~~~~~glPLal 339 (808)
... ..-..++++-|++.+.+..-.|
T Consensus 461 ~r~--l~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 461 QEQ--LNAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred hcC--CCCCHHHHHHHHHhccCCHHHH
Confidence 322 2233566667777666554333
No 116
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.76 E-value=9.4e-06 Score=82.94 Aligned_cols=224 Identities=15% Similarity=0.132 Sum_probs=123.4
Q ss_pred CCceeEEEecCCCCCCc--------ccCcccceEeecCCCCc----ccccch-------hhcccccceeccCCCCCCCCC
Q 041551 489 FAEVRHLEWARCPLKTL--------NICAEKLVSLKMPRSKV----QQLWDD-------VQDLVNLKEIDLSRSESLTKL 549 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--------~~~~~~L~~L~L~~n~l----~~l~~~-------~~~l~~L~~L~L~~n~~~~~~ 549 (808)
+..+..++++||.+-.- ....++|+..+++.--. .++|+. +..+++|++||||+|.+-...
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 56788888888875432 23445677776665321 134432 445678888888888654443
Q ss_pred C-C----CCCCCCCcEEecCCCCCCcccc--------------ccccCCCCcCEEecCCCCCCCcCCCcC------CCCC
Q 041551 550 P-D----LSRAKNLEILWLRGCLSLVETH--------------STIQYLNKLEDLDLDYCISLTSLPTSI------HSKH 604 (808)
Q Consensus 550 p-~----~~~l~~L~~L~L~~n~~l~~~p--------------~~~~~l~~L~~L~l~~~~~l~~lp~~~------~l~~ 604 (808)
+ . ++++..|++|.|.+|. ++... .-+++-++|+++...+| .+..-+... ..+.
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPT 186 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccc
Confidence 3 1 5667888888888873 32211 11223344444444442 333332211 1233
Q ss_pred CCEEeccCCCCCCcccccccccccEEEecccCCe-----ecCcccccCCcCcEEEeecCCCcc----cccccccCCCCCC
Q 041551 605 LKELSLRGCSNLKIFPEITSCHMWRLELTKVGIK-----ELPSSIECLSNLQYLYIWDCSELE----SISSSIFKLNSLE 675 (808)
Q Consensus 605 L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~-----~lp~~~~~l~~L~~L~L~~n~~l~----~lp~~~~~l~~L~ 675 (808)
|+.+.+..|.|. -+-..+..+++|+.|||.+|.+.. .+-..+..+++|+
T Consensus 187 ----------------------leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 187 ----------------------LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred ----------------------cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence 455555555553 233457788899999998887643 2334466678888
Q ss_pred EEEeecCCCCccccCCCCCcCC--CCceeeecCCCCCCCCccc----ccccCCCccccccccccccc
Q 041551 676 SIDISNCSNLKRFLEIPSCNID--GGFAFCIVVPHCWEPCETH----EVFCGLKHKSQRNLDRRSLG 736 (808)
Q Consensus 676 ~L~l~~c~~l~~lp~~~~~~~~--~~~~~~l~l~~~~~~~~~~----~~f~~l~~l~~~~l~~n~~~ 736 (808)
.|++++|..-..=-.-....+. ...+..+.++.|.+..... ...-..+.+..+++++|.++
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 9999888421100000000011 1133445666777654211 11223788899999999985
No 117
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00058 Score=78.47 Aligned_cols=97 Identities=10% Similarity=0.115 Sum_probs=65.0
Q ss_pred ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCc-hhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCC
Q 041551 241 ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRD-KQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGH 316 (808)
Q Consensus 241 ~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 316 (808)
.+++-++|||+++. ....+.|+..+.......++|++|.+ ..+.... .....|.+.+++.++..+.+.+.+-...
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~- 195 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ- 195 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-
Confidence 35667999999974 45677887777665556666555544 4443221 2247899999999999999887663221
Q ss_pred CCchHHHHHHHHHHHhcCchhhH
Q 041551 317 LDSSYTELTDKAIKYAQGVPLAL 339 (808)
Q Consensus 317 ~~~~~~~~~~~i~~~~~glPLal 339 (808)
.....+....|++.++|.+-.+
T Consensus 196 -i~~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 196 -IPFEPRALQLLARAADGSMRDA 217 (647)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHH
Confidence 2233455678999999977543
No 118
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.0022 Score=70.25 Aligned_cols=154 Identities=18% Similarity=0.287 Sum_probs=87.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc--------ccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR--------HFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLN 238 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~--------~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~ 238 (808)
.+.+.++|++|+||||+|+.+++.+.. .|...++-. .. ....+...+. .+...... .
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~~-~~~~~~~~i~-~l~~~~~~-----------~ 103 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--DA-ASNNSVDDIR-NLIDQVRI-----------P 103 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--cc-ccCCCHHHHH-HHHHHHhh-----------c
Confidence 457889999999999999999886543 122222111 00 0111111111 11111000 0
Q ss_pred HHccceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEe-Cchhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcC
Q 041551 239 RLARKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITT-RDKQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRG 314 (808)
Q Consensus 239 ~L~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 314 (808)
-..+++-++|+|+++.. ..++.+...+......+.+|++| ....+.... .....++.++++.++....+...+...
T Consensus 104 p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~ 183 (367)
T PRK14970 104 PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKE 183 (367)
T ss_pred cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHc
Confidence 01234568999998743 44677766555444455565555 333332221 223578999999999998888877432
Q ss_pred CCCCchHHHHHHHHHHHhcCchh
Q 041551 315 GHLDSSYTELTDKAIKYAQGVPL 337 (808)
Q Consensus 315 ~~~~~~~~~~~~~i~~~~~glPL 337 (808)
+. .-..+.++.+++.++|.+-
T Consensus 184 g~--~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 184 GI--KFEDDALHIIAQKADGALR 204 (367)
T ss_pred CC--CCCHHHHHHHHHhCCCCHH
Confidence 22 2234677888889998654
No 119
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.73 E-value=0.00032 Score=72.85 Aligned_cols=130 Identities=12% Similarity=0.126 Sum_probs=70.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc--CceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHc-cc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF--EGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLA-RK 243 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~-~~ 243 (808)
...+.++|++|+||||+|+.+++.+...- ....++.. .. .++.... .+. ....+++.+. ..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~-~~-------~~l~~~~----~g~----~~~~~~~~~~~a~ 105 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV-ER-------ADLVGEY----IGH----TAQKTREVIKKAL 105 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe-cH-------HHhhhhh----ccc----hHHHHHHHHHhcc
Confidence 45678999999999999999998653211 11122221 00 1111111 111 1111122221 12
Q ss_pred eEEEEEecCCC----------HHHHHHHHhccCCCCCCCEEEEEeCchhhhh------hc--CCCeEEEecCCChhhHHH
Q 041551 244 MVLLVFDDVNN----------PRQIESLIGHLDHLASGSRVIITTRDKQVLK------NC--WAGQIYQMKELVYTDAQK 305 (808)
Q Consensus 244 ~~LlVlDdv~~----------~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~------~~--~~~~~~~l~~L~~~ea~~ 305 (808)
.-+|++|+++. .+.++.+...+........+|+++...+.-. .. .....+.+++++.+|-.+
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~ 185 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELME 185 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHH
Confidence 34889999974 3356667666554433445555554332210 00 123568899999999999
Q ss_pred HHHHHhh
Q 041551 306 LFSQYAF 312 (808)
Q Consensus 306 Lf~~~~~ 312 (808)
++.+.+.
T Consensus 186 Il~~~~~ 192 (261)
T TIGR02881 186 IAERMVK 192 (261)
T ss_pred HHHHHHH
Confidence 9987773
No 120
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.0016 Score=71.80 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=63.8
Q ss_pred cceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEe-Cchhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITT-RDKQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+.+-++|+|+++. .+.++.+...+....+.+.+|++| +...+.... .....+++++++.++..+.+...+-.. .
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~--g 203 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAE--G 203 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc--C
Confidence 4556889999975 346777877776655667666555 434443321 123578899999999988888766321 2
Q ss_pred CchHHHHHHHHHHHhcCchhhH
Q 041551 318 DSSYTELTDKAIKYAQGVPLAL 339 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glPLal 339 (808)
..-..+.++.+++.++|.+--+
T Consensus 204 ~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 204 ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred CCCCHHHHHHHHHHcCCCHHHH
Confidence 2334567889999999977433
No 121
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.00051 Score=73.84 Aligned_cols=165 Identities=16% Similarity=0.218 Sum_probs=94.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc----cCceEEEecchhhhhccCHHHHHHHHHhh-------H----hcC----
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH----FEGSYFAQNVREAEETGGIKDLQKELLSD-------V----LND---- 227 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~----F~~~~~~~~~~~~~~~~~~~~l~~~ll~~-------~----~~~---- 227 (808)
...+.|+|..|+||||+|..+++.+-.. +...... ...+.....+.+... + ...
T Consensus 45 ~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~ 117 (351)
T PRK09112 45 HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKF 117 (351)
T ss_pred CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCCHHHHHHHcCCCCCEEEeecccccccccc
Confidence 3458899999999999999999865431 1111000 000000011111000 0 000
Q ss_pred cc---cccHHHHHHHHc-----cceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCch-hhhhhc-CCCeEEEe
Q 041551 228 RI---LRDVRSQLNRLA-----RKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDK-QVLKNC-WAGQIYQM 295 (808)
Q Consensus 228 ~~---~~~~~~l~~~L~-----~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l 295 (808)
.. .+.++.+.+.+. +++-++|+|+++. ....+.++..+.....+..+|++|... .+.... .....+++
T Consensus 118 ~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l 197 (351)
T PRK09112 118 KTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISL 197 (351)
T ss_pred cccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEe
Confidence 00 133444444442 4667899999985 455677777766545556555555433 333222 12368999
Q ss_pred cCCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHH
Q 041551 296 KELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVL 342 (808)
Q Consensus 296 ~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 342 (808)
.+++.++..+++...... .. ...+.+..+++.++|.|.....+
T Consensus 198 ~pl~~~~~~~~L~~~~~~---~~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 198 KPLDDDELKKALSHLGSS---QG-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred cCCCHHHHHHHHHHhhcc---cC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999874311 11 22455778999999999765433
No 122
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.68 E-value=5.7e-06 Score=84.47 Aligned_cols=172 Identities=15% Similarity=0.151 Sum_probs=84.3
Q ss_pred CCceeEEEecCCCCCC--------cccCcccceEeecCCCCccccc--------------chhhcccccceeccCCCCCC
Q 041551 489 FAEVRHLEWARCPLKT--------LNICAEKLVSLKMPRSKVQQLW--------------DDVQDLVNLKEIDLSRSESL 546 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~--------l~~~~~~L~~L~L~~n~l~~l~--------------~~~~~l~~L~~L~L~~n~~~ 546 (808)
.++|++|+|+.|.+-. +...+..|++|.|.+|.+...- .....-++|+++....|..
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl- 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL- 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-
Confidence 3466777776665322 1334556666666666654221 1122334555555555542
Q ss_pred CCCC-----C-CCCCCCCcEEecCCCCCCcc----ccccccCCCCcCEEecCCCCCCCcCC----CcC-CCCCCCEEecc
Q 041551 547 TKLP-----D-LSRAKNLEILWLRGCLSLVE----THSTIQYLNKLEDLDLDYCISLTSLP----TSI-HSKHLKELSLR 611 (808)
Q Consensus 547 ~~~p-----~-~~~l~~L~~L~L~~n~~l~~----~p~~~~~l~~L~~L~l~~~~~l~~lp----~~~-~l~~L~~L~L~ 611 (808)
..-+ . |...+.|+.+.+..|..-.. +...+..+++|++|||.+|.....-. ..+ .+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 2211 1 33445556555555532211 22334555666666666543222111 111 23455555555
Q ss_pred CCCCCCcccccccccccEEEecccCCe-----ecCccc-ccCCcCcEEEeecCCCccc----ccccccCCCCCCEEEeec
Q 041551 612 GCSNLKIFPEITSCHMWRLELTKVGIK-----ELPSSI-ECLSNLQYLYIWDCSELES----ISSSIFKLNSLESIDISN 681 (808)
Q Consensus 612 ~~~~l~~~p~~~~~~L~~L~L~~n~i~-----~lp~~~-~~l~~L~~L~L~~n~~l~~----lp~~~~~l~~L~~L~l~~ 681 (808)
+| .++ .+-..+ ...++|+.|.+.+|.+... +-..+...+.|..|+|++
T Consensus 250 dc----------------------ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 250 DC----------------------LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred cc----------------------ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 55 333 121122 2357788888888776421 222345577788888888
Q ss_pred CC
Q 041551 682 CS 683 (808)
Q Consensus 682 c~ 683 (808)
|.
T Consensus 308 N~ 309 (382)
T KOG1909|consen 308 NR 309 (382)
T ss_pred cc
Confidence 75
No 123
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.0012 Score=75.18 Aligned_cols=157 Identities=15% Similarity=0.189 Sum_probs=94.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc---------------------CceEEEecchhhhhccCHHHHHHHHHhhHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF---------------------EGSYFAQNVREAEETGGIKDLQKELLSDVL 225 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F---------------------~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 225 (808)
.+.+.++|..|+||||+|+.+++.+-... ....++.. .....+
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~----a~~~~I------------ 101 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDG----ASNRGI------------ 101 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEec----ccccCH------------
Confidence 45678899999999999999998653211 01112210 001111
Q ss_pred cCcccccHHHHHHH-----HccceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEeCc-hhhhhhc-CCCeEEEec
Q 041551 226 NDRILRDVRSQLNR-----LARKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITTRD-KQVLKNC-WAGQIYQMK 296 (808)
Q Consensus 226 ~~~~~~~~~~l~~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~ 296 (808)
+.++.+.+. ..+++-++|+|+++.. +..+.|+..+........+|++|.+ ..+.... .....++++
T Consensus 102 -----d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~ 176 (624)
T PRK14959 102 -----DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFT 176 (624)
T ss_pred -----HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccC
Confidence 112222222 2356679999999753 5567777776544445556665554 3343221 123578999
Q ss_pred CCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCc-hhhHHHHhhhh
Q 041551 297 ELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGV-PLALKVLGCYL 346 (808)
Q Consensus 297 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~~~~L 346 (808)
+++.++..+.+...+.... ..-..+.++.|++.++|. -.|+..+...+
T Consensus 177 pLs~~eL~~~L~~il~~eg--i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 177 RLSEAGLEAHLTKVLGREG--VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999998888764322 223456678889999985 46776665433
No 124
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.67 E-value=8.6e-05 Score=75.60 Aligned_cols=87 Identities=18% Similarity=0.135 Sum_probs=57.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc-ccCceEEEecchhhhhccCHHHHHHHHH-----hhHhcCccc------ccHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR-HFEGSYFAQNVREAEETGGIKDLQKELL-----SDVLNDRIL------RDVR 234 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~~ll-----~~~~~~~~~------~~~~ 234 (808)
-..++|.|.+|+|||||++.+++.+.. +|+..+|+..+.+ ...+..++++.+. .+....... ....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999996543 6888989875433 2256778888772 222211110 1111
Q ss_pred HHHHH-HccceEEEEEecCCCH
Q 041551 235 SQLNR-LARKMVLLVFDDVNNP 255 (808)
Q Consensus 235 ~l~~~-L~~~~~LlVlDdv~~~ 255 (808)
..... -.++++++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 12211 2478999999999754
No 125
>PRK08116 hypothetical protein; Validated
Probab=97.65 E-value=0.00024 Score=73.68 Aligned_cols=102 Identities=23% Similarity=0.320 Sum_probs=58.7
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLL 247 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~Ll 247 (808)
.-+.++|.+|+|||.||.++++.+..+...++|+.. ..+...+....... .......+.+.+.+-. ||
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~----------~~ll~~i~~~~~~~-~~~~~~~~~~~l~~~d-lL 182 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF----------PQLLNRIKSTYKSS-GKEDENEIIRSLVNAD-LL 182 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH----------HHHHHHHHHHHhcc-ccccHHHHHHHhcCCC-EE
Confidence 347899999999999999999987666445566551 22333332222111 1122334455555544 89
Q ss_pred EEecCC--CHHH--HHHHHhccCC-CCCCCEEEEEeCch
Q 041551 248 VFDDVN--NPRQ--IESLIGHLDH-LASGSRVIITTRDK 281 (808)
Q Consensus 248 VlDdv~--~~~~--~~~l~~~l~~-~~~gs~IiiTTR~~ 281 (808)
||||+. .... .+.+...+.. ...|..+||||...
T Consensus 183 viDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 183 ILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 999993 2222 2223322221 13456789998754
No 126
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.65 E-value=0.00094 Score=69.97 Aligned_cols=128 Identities=15% Similarity=0.133 Sum_probs=72.0
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcc--cCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRH--FEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~--F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
-+.++|.+|.|||++|+.++..+... .....|+... ..++... ..+... .....+.+.. ..-+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~--------~~~l~~~----~~g~~~-~~~~~~~~~a--~~gv 124 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT--------RDDLVGQ----YIGHTA-PKTKEILKRA--MGGV 124 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec--------HHHHhHh----hcccch-HHHHHHHHHc--cCcE
Confidence 58899999999999999888755332 1111233211 0112111 112111 1111222221 3368
Q ss_pred EEEecCCC-----------HHHHHHHHhccCCCCCCCEEEEEeCchhhhhhc--------CCCeEEEecCCChhhHHHHH
Q 041551 247 LVFDDVNN-----------PRQIESLIGHLDHLASGSRVIITTRDKQVLKNC--------WAGQIYQMKELVYTDAQKLF 307 (808)
Q Consensus 247 lVlDdv~~-----------~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~~Lf 307 (808)
|+||++.. .+.++.+...+.....+.+||+++......... .....+.+++++.+|-.+++
T Consensus 125 L~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~ 204 (284)
T TIGR02880 125 LFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIA 204 (284)
T ss_pred EEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHH
Confidence 89999962 233556666665545566777776543221111 12357899999999999998
Q ss_pred HHHh
Q 041551 308 SQYA 311 (808)
Q Consensus 308 ~~~~ 311 (808)
...+
T Consensus 205 ~~~l 208 (284)
T TIGR02880 205 GLML 208 (284)
T ss_pred HHHH
Confidence 8876
No 127
>PRK08181 transposase; Validated
Probab=97.64 E-value=0.00015 Score=74.73 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=56.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
..-+.++|.+|+|||.||.++++....+...+.|+.. .++...+...... .......+.+. +.=|
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~----------~~L~~~l~~a~~~----~~~~~~l~~l~-~~dL 170 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT----------TDLVQKLQVARRE----LQLESAIAKLD-KFDL 170 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH----------HHHHHHHHHHHhC----CcHHHHHHHHh-cCCE
Confidence 3458999999999999999999977665555666652 2333333222111 12223333333 3459
Q ss_pred EEEecCCC----HHHHHHHHhccCCCCCCCEEEEEeCch
Q 041551 247 LVFDDVNN----PRQIESLIGHLDHLASGSRVIITTRDK 281 (808)
Q Consensus 247 lVlDdv~~----~~~~~~l~~~l~~~~~gs~IiiTTR~~ 281 (808)
|||||+.. ....+.+...+...-.+..+||||...
T Consensus 171 LIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 171 LILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 99999942 222223333332111123588888765
No 128
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.61 E-value=0.00013 Score=76.66 Aligned_cols=92 Identities=30% Similarity=0.491 Sum_probs=74.6
Q ss_pred CCcccEEecCccccCCCChHHHHHHHHHhCCcceEeeC-CcCCCCcchHHHHHHHHhhcceeEEecccccc--------h
Q 041551 22 SNKYDVFLSFRGEDTRDNFTSHLYSALWHNNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYAS--------S 92 (808)
Q Consensus 22 ~~~~dvflSy~~~D~~~~f~~~l~~~l~~~g~~~~~d~-~l~~g~~~~~~i~~ai~~s~~~v~v~S~~y~~--------s 92 (808)
.-..||||||+.. +-...++-+-..|.-+|++||+|- ++..|+ +...+.+.|+.+|.+|.|++|+-.. -
T Consensus 610 skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe 687 (832)
T KOG3678|consen 610 SKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE 687 (832)
T ss_pred cCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence 4568999999875 346788888888999999999997 777775 6789999999999999999998743 2
Q ss_pred hhhHHHHHHHHHhhhcCCCeEEEEEee
Q 041551 93 GWCLDELSKIFECKHDYGQIVIPVFCR 119 (808)
Q Consensus 93 ~~c~~el~~~~~~~~~~~~~v~Pv~~~ 119 (808)
.|.-.|+..++++.+ .++|||-.
T Consensus 688 DWVHKEl~~Afe~~K----NIiPI~D~ 710 (832)
T KOG3678|consen 688 DWVHKELKCAFEHQK----NIIPIFDT 710 (832)
T ss_pred HHHHHHHHHHHHhcC----Ceeeeecc
Confidence 466668888887764 48999844
No 129
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.60 E-value=0.00089 Score=72.13 Aligned_cols=142 Identities=15% Similarity=0.218 Sum_probs=84.9
Q ss_pred HhhhcccCCccceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHH
Q 041551 155 TEAANLSGFDSHVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVR 234 (808)
Q Consensus 155 ~~~~~~~g~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~ 234 (808)
..++...|. .-..+-|||..|.|||.|++++.+......+....+.... ......+...+.. ..++
T Consensus 103 ~~va~~~g~--~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s--------e~f~~~~v~a~~~----~~~~ 168 (408)
T COG0593 103 KAVAENPGG--AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS--------EDFTNDFVKALRD----NEME 168 (408)
T ss_pred HHHHhccCC--cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH--------HHHHHHHHHHHHh----hhHH
Confidence 334444444 2456889999999999999999998877777433332111 1112222222111 2345
Q ss_pred HHHHHHccceEEEEEecCCCHH----HHHHHHhccCC-CCCCCEEEEEeCchh---------hhhhcCCCeEEEecCCCh
Q 041551 235 SQLNRLARKMVLLVFDDVNNPR----QIESLIGHLDH-LASGSRVIITTRDKQ---------VLKNCWAGQIYQMKELVY 300 (808)
Q Consensus 235 ~l~~~L~~~~~LlVlDdv~~~~----~~~~l~~~l~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~ 300 (808)
.+++.. .-=++++||++-.. .-+++...+.. ...|..||+|++... +......+-++++.+.+.
T Consensus 169 ~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~ 246 (408)
T COG0593 169 KFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDD 246 (408)
T ss_pred HHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCH
Confidence 556555 44488999986421 12222222211 133558999986543 223334557899999999
Q ss_pred hhHHHHHHHHhh
Q 041551 301 TDAQKLFSQYAF 312 (808)
Q Consensus 301 ~ea~~Lf~~~~~ 312 (808)
+.....+.+.+-
T Consensus 247 e~r~aiL~kka~ 258 (408)
T COG0593 247 ETRLAILRKKAE 258 (408)
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
No 130
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.59 E-value=0.011 Score=66.52 Aligned_cols=98 Identities=9% Similarity=0.061 Sum_probs=62.8
Q ss_pred cceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEe-Cchhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITT-RDKQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+++-++|+|+++.. +..+.++..+....+...+|++| +...+.... .....+++.+++.++..+.+...+-...
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-- 195 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-- 195 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC--
Confidence 46679999999743 45677776666545555555554 433333221 2235789999999999988888763222
Q ss_pred CchHHHHHHHHHHHhcCchhhHHH
Q 041551 318 DSSYTELTDKAIKYAQGVPLALKV 341 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glPLal~~ 341 (808)
.....+.+..+++.++|.+..+..
T Consensus 196 i~id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 196 IEYEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 223345677888999997654433
No 131
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.58 E-value=0.00029 Score=64.58 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.0
Q ss_pred EEEeecCCCcHhHHHHHHHHHhh
Q 041551 170 IWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
|.|+|.+|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 132
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0097 Score=67.14 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=65.4
Q ss_pred cceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCch-hhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDK-QVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+++-++|+|+++. .+..+.|+..+......+++|++|.+. .+.... .....+++.+++.++..+.+...+-..+
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-- 193 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG-- 193 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC--
Confidence 4566889999975 455777777776656677777777654 222111 1246889999999999998887763322
Q ss_pred CchHHHHHHHHHHHhcCchhhHH
Q 041551 318 DSSYTELTDKAIKYAQGVPLALK 340 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glPLal~ 340 (808)
..-..+.+..|++.++|.+--+.
T Consensus 194 i~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 194 VSYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred CCCCHHHHHHHHHHcCCcHHHHH
Confidence 22235677889999999874443
No 133
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.57 E-value=0.0037 Score=72.04 Aligned_cols=94 Identities=13% Similarity=0.133 Sum_probs=61.5
Q ss_pred cceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEe-Cchhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITT-RDKQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+.+-++|+|+++.. ...+.|+..+......+.+|++| +...+.... .....+++.+++.++....+.+.+-...
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-- 203 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-- 203 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--
Confidence 44557899998754 45677777776555556555544 444443332 3357899999999998888877663221
Q ss_pred CchHHHHHHHHHHHhcCchh
Q 041551 318 DSSYTELTDKAIKYAQGVPL 337 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glPL 337 (808)
..-..+.++.+++.++|..-
T Consensus 204 i~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 204 IQIDADALQLIARKAQGSMR 223 (620)
T ss_pred CCCCHHHHHHHHHHhCCCHH
Confidence 22335667889999999543
No 134
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.57 E-value=0.0017 Score=73.61 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=62.4
Q ss_pred ceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEe-Cchhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCCC
Q 041551 243 KMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITT-RDKQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHLD 318 (808)
Q Consensus 243 ~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 318 (808)
++-++|+|+++. .+..+.|+..+......+.+|++| ....+.... .....+++.+++.++....+...+-... .
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg--i 196 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEK--I 196 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC--C
Confidence 344699999975 455677777665544556555554 433333221 2246789999999999988888763322 1
Q ss_pred chHHHHHHHHHHHhcCchh-hHHHHh
Q 041551 319 SSYTELTDKAIKYAQGVPL-ALKVLG 343 (808)
Q Consensus 319 ~~~~~~~~~i~~~~~glPL-al~~~~ 343 (808)
.-..+.+..+++.++|.+- |+..+-
T Consensus 197 ~Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 197 KIEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 2234567888999998654 444333
No 135
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.56 E-value=0.00081 Score=73.89 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=79.5
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEEE
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLLV 248 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~LlV 248 (808)
++.|.|+-++||||+++.+.....+. .+++...........+.+.... +.+.-..++..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~----------------~~~~~~~~~~yif 99 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRA----------------YIELKEREKSYIF 99 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHH----------------HHHhhccCCceEE
Confidence 89999999999999997776655444 4555422111111111111111 1111112778999
Q ss_pred EecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhhhhhc------CCCeEEEecCCChhhHHHHH
Q 041551 249 FDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQVLKNC------WAGQIYQMKELVYTDAQKLF 307 (808)
Q Consensus 249 lDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~------~~~~~~~l~~L~~~ea~~Lf 307 (808)
||.|.....|+.....+.+.+.. +|++|+-+..+.... +-...+++-||+..|-..+-
T Consensus 100 LDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 100 LDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred EecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 99999999999999988877766 899998877654321 33467899999999887654
No 136
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.56 E-value=0.00067 Score=74.54 Aligned_cols=147 Identities=15% Similarity=0.233 Sum_probs=80.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~ 245 (808)
.+-|.++|++|+|||++|++++++....|- .+.. ..+.... .+. ....+..+.+.. ...+.
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v~~----------~~l~~~~----~g~-~~~~i~~~f~~a~~~~p~ 226 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFI---RVVG----------SELVQKF----IGE-GARLVRELFELAREKAPS 226 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEE---Eeeh----------HHHhHhh----ccc-hHHHHHHHHHHHHhcCCe
Confidence 556889999999999999999987654321 1110 1111111 110 011122222222 24568
Q ss_pred EEEEecCCCH-------------HH---HHHHHhccCCC--CCCCEEEEEeCchhhhhh-c----CCCeEEEecCCChhh
Q 041551 246 LLVFDDVNNP-------------RQ---IESLIGHLDHL--ASGSRVIITTRDKQVLKN-C----WAGQIYQMKELVYTD 302 (808)
Q Consensus 246 LlVlDdv~~~-------------~~---~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~e 302 (808)
+|+|||++.. +. +..++..+... ..+..||.||...+.... . ..+..++++..+.++
T Consensus 227 IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~ 306 (389)
T PRK03992 227 IIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEG 306 (389)
T ss_pred EEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHH
Confidence 9999999753 11 22233222211 235567777765543221 1 234678999999999
Q ss_pred HHHHHHHHhhcCCCCC-chHHHHHHHHHHHhcCc
Q 041551 303 AQKLFSQYAFRGGHLD-SSYTELTDKAIKYAQGV 335 (808)
Q Consensus 303 a~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~~~gl 335 (808)
..++|..+..+..... .. ...+++.+.|.
T Consensus 307 R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 307 RLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred HHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 9999998774332221 22 34555666554
No 137
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.55 E-value=0.0062 Score=70.09 Aligned_cols=168 Identities=14% Similarity=0.165 Sum_probs=92.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhH-------hcC--cccccHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDV-------LND--RILRDVRSQL 237 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~-------~~~--~~~~~~~~l~ 237 (808)
.+.+.++|+.|+||||+|+.+++.+.......- . .......+.-.-.+.+.... ... ...+.++.+.
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~---~-~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIi 121 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALNYEGPDGD---G-GPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREII 121 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhCcCCcccc---C-CCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHH
Confidence 446889999999999999999986543221000 0 00000000000001110000 000 0012222232
Q ss_pred HHH-----ccceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEe-Cchhhhhhc-CCCeEEEecCCChhhHHHHHH
Q 041551 238 NRL-----ARKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITT-RDKQVLKNC-WAGQIYQMKELVYTDAQKLFS 308 (808)
Q Consensus 238 ~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 308 (808)
+.+ ..++-++|+|+++.. ...+.|+..+......+++|++| ....+.... .....+++..++.++..+.+.
T Consensus 122 e~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~ 201 (598)
T PRK09111 122 ESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLS 201 (598)
T ss_pred HHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHH
Confidence 222 234567999999753 45777777766555667666555 444443332 223688999999999999998
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHhcCchhhHH
Q 041551 309 QYAFRGGHLDSSYTELTDKAIKYAQGVPLALK 340 (808)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 340 (808)
+.+-... ..-..+....|++.++|.+.-+.
T Consensus 202 ~i~~keg--i~i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 202 RIAAKEG--VEVEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred HHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 8773222 22334667889999999876543
No 138
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=0.006 Score=72.67 Aligned_cols=96 Identities=10% Similarity=0.177 Sum_probs=64.1
Q ss_pred ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCch-hhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCC
Q 041551 241 ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDK-QVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGH 316 (808)
Q Consensus 241 ~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~ 316 (808)
.+++-++|||+++. .+..+.|+..+......+.+|++|.+. .+...+ .....|++..++.++..+.+.+.+-...
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG- 196 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG- 196 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-
Confidence 35566889999985 455777877777666666666655443 344332 2347899999999999888877652222
Q ss_pred CCchHHHHHHHHHHHhcCchhh
Q 041551 317 LDSSYTELTDKAIKYAQGVPLA 338 (808)
Q Consensus 317 ~~~~~~~~~~~i~~~~~glPLa 338 (808)
.....+....|++.++|.+..
T Consensus 197 -v~id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 197 -VPVEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred -CCCCHHHHHHHHHHcCCCHHH
Confidence 222345567889999997743
No 139
>CHL00181 cbbX CbbX; Provisional
Probab=97.54 E-value=0.0019 Score=67.69 Aligned_cols=130 Identities=14% Similarity=0.143 Sum_probs=73.3
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcc-c-CceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRH-F-EGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMV 245 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~-F-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~ 245 (808)
..+.++|.+|+||||+|+.+++..... + ...-|+... ...+... ..+... .....+.+. ...-
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~--------~~~l~~~----~~g~~~-~~~~~~l~~--a~gg 124 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT--------RDDLVGQ----YIGHTA-PKTKEVLKK--AMGG 124 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec--------HHHHHHH----Hhccch-HHHHHHHHH--ccCC
Confidence 347899999999999999998854321 1 111132211 1112221 111111 111112221 1235
Q ss_pred EEEEecCCC-----------HHHHHHHHhccCCCCCCCEEEEEeCchhhhhhc--------CCCeEEEecCCChhhHHHH
Q 041551 246 LLVFDDVNN-----------PRQIESLIGHLDHLASGSRVIITTRDKQVLKNC--------WAGQIYQMKELVYTDAQKL 306 (808)
Q Consensus 246 LlVlDdv~~-----------~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~~L 306 (808)
+|+||+++. .+..+.+...+.....+.+||+++....+.... .....+..++++.+|..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 899999964 234566666555545566777777543331110 2345789999999999999
Q ss_pred HHHHhh
Q 041551 307 FSQYAF 312 (808)
Q Consensus 307 f~~~~~ 312 (808)
+...+-
T Consensus 205 ~~~~l~ 210 (287)
T CHL00181 205 AKIMLE 210 (287)
T ss_pred HHHHHH
Confidence 888774
No 140
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.53 E-value=0.0082 Score=69.66 Aligned_cols=164 Identities=15% Similarity=0.157 Sum_probs=90.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhh----hccCHHHHHHHHHhhHhcC--cccccHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAE----ETGGIKDLQKELLSDVLND--RILRDVRSQLNRL 240 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~----~~~~~~~l~~~ll~~~~~~--~~~~~~~~l~~~L 240 (808)
.+.+.++|+.|+||||+|+.+++.+-..-....+-.+ ..+. ...++. .+.+. ...+.++.+.+.+
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC-~~C~~~~~~~~Dvi--------eidaasn~~vd~IReLie~~ 110 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPC-QECIENVNNSLDII--------EMDAASNNGVDEIRELIENV 110 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCch-hHHHHhhcCCCcEE--------EEeccccCCHHHHHHHHHHH
Confidence 4567899999999999999999864321000000000 0000 000000 00000 0011223333332
Q ss_pred -----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEE-EeCchhhhhhc-CCCeEEEecCCChhhHHHHHHHHh
Q 041551 241 -----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVII-TTRDKQVLKNC-WAGQIYQMKELVYTDAQKLFSQYA 311 (808)
Q Consensus 241 -----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~Iii-TTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~ 311 (808)
.+++-++|+|+++. .+.+..|+..+........+|+ ||+...+.... .....+++.+++.++..+.+...+
T Consensus 111 ~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il 190 (725)
T PRK07133 111 KNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFIL 190 (725)
T ss_pred HhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHH
Confidence 25666899999874 4567777777665455555554 54444444332 234689999999999998888765
Q ss_pred hcCCCCCchHHHHHHHHHHHhcCchh-hHHH
Q 041551 312 FRGGHLDSSYTELTDKAIKYAQGVPL-ALKV 341 (808)
Q Consensus 312 ~~~~~~~~~~~~~~~~i~~~~~glPL-al~~ 341 (808)
-..+ .....+.+..+++.++|-+- |+..
T Consensus 191 ~keg--I~id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 191 EKEN--ISYEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred HHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3222 22234567789999988654 4443
No 141
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.52 E-value=0.00089 Score=77.76 Aligned_cols=111 Identities=15% Similarity=0.037 Sum_probs=59.3
Q ss_pred cHHHHHHHHccceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEE--EeCchhhhh-hc-CCCeEEEecCCChhhHHH
Q 041551 232 DVRSQLNRLARKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVII--TTRDKQVLK-NC-WAGQIYQMKELVYTDAQK 305 (808)
Q Consensus 232 ~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~Iii--TTR~~~v~~-~~-~~~~~~~l~~L~~~ea~~ 305 (808)
....+.+.+.++++.++-|+.|.. ..|+.+...+....+...|+| ||++..... .. .....+.+.+++.+|.++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 345556666666676666555432 235555444443344444555 566543211 11 112467889999999999
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhh
Q 041551 306 LFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGC 344 (808)
Q Consensus 306 Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~ 344 (808)
++.+.+-.... .-..+..+.|.+++..-+-|+..++.
T Consensus 361 Il~~~a~~~~v--~ls~eal~~L~~ys~~gRraln~L~~ 397 (615)
T TIGR02903 361 IVLNAAEKINV--HLAAGVEELIARYTIEGRKAVNILAD 397 (615)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHCCCcHHHHHHHHHH
Confidence 99987632211 11234445555555444555554443
No 142
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.51 E-value=0.0013 Score=71.91 Aligned_cols=148 Identities=15% Similarity=0.234 Sum_probs=81.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHH-HccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNR-LARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~-L~~~~~ 245 (808)
.+-|.++|++|.|||+||+++++.....| +.+.. ..+.... .+.. ...++.+.+. ....+.
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~~----------s~l~~k~----~ge~-~~~lr~lf~~A~~~~P~ 240 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVVG----------SEFVQKY----LGEG-PRMVRDVFRLARENAPS 240 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEeh----------HHHHHHh----cchh-HHHHHHHHHHHHhcCCe
Confidence 56788999999999999999998765433 11110 0111111 1110 1112222222 245789
Q ss_pred EEEEecCCCH-------------H---HHHHHHhccCCC--CCCCEEEEEeCchhhhhh-c----CCCeEEEecCCChhh
Q 041551 246 LLVFDDVNNP-------------R---QIESLIGHLDHL--ASGSRVIITTRDKQVLKN-C----WAGQIYQMKELVYTD 302 (808)
Q Consensus 246 LlVlDdv~~~-------------~---~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~e 302 (808)
+|++|+++.. + .+..++..+... ..+..||.||...+.... . ..+..++++..+.++
T Consensus 241 ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~ 320 (398)
T PTZ00454 241 IIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQ 320 (398)
T ss_pred EEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHH
Confidence 9999997642 1 123333333321 235667888876554322 1 235678899889998
Q ss_pred HHHHHHHHhhcCCC-CCchHHHHHHHHHHHhcCch
Q 041551 303 AQKLFSQYAFRGGH-LDSSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 303 a~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~glP 336 (808)
..++|..+..+... ...+ ..++++...|..
T Consensus 321 R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 321 KRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred HHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 88888876532221 1122 345555665543
No 143
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.50 E-value=0.00025 Score=75.84 Aligned_cols=88 Identities=16% Similarity=0.170 Sum_probs=59.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc-cCceEEEecchhhhhccCHHHHHHHHHhhHhcCc----cc---ccHH----
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQNVREAEETGGIKDLQKELLSDVLNDR----IL---RDVR---- 234 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~----~~---~~~~---- 234 (808)
-..++|+|.+|.|||||++.+++.+... |+..+|+..+++ ....+.++++.++..+.... .. ....
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3468999999999999999999976655 998899876433 23567788888754332211 11 1111
Q ss_pred HHHHH-HccceEEEEEecCCCHH
Q 041551 235 SQLNR-LARKMVLLVFDDVNNPR 256 (808)
Q Consensus 235 ~l~~~-L~~~~~LlVlDdv~~~~ 256 (808)
..... -.+++++|++|++....
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHH
Confidence 11111 25799999999997643
No 144
>PRK09183 transposase/IS protein; Provisional
Probab=97.50 E-value=0.00027 Score=72.85 Aligned_cols=100 Identities=22% Similarity=0.241 Sum_probs=52.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
...+.|+|.+|+|||+||..+++.....-..+.|+.. .++...+...... .......+....+.-+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~----------~~l~~~l~~a~~~----~~~~~~~~~~~~~~dl 167 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA----------ADLLLQLSTAQRQ----GRYKTTLQRGVMAPRL 167 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH----------HHHHHHHHHHHHC----CcHHHHHHHHhcCCCE
Confidence 3457899999999999999998865443334445441 1222222111111 1122222222235569
Q ss_pred EEEecCCC----HHHHHHHHhccCC-CCCCCEEEEEeCch
Q 041551 247 LVFDDVNN----PRQIESLIGHLDH-LASGSRVIITTRDK 281 (808)
Q Consensus 247 lVlDdv~~----~~~~~~l~~~l~~-~~~gs~IiiTTR~~ 281 (808)
+|+||+.- .++.+.+...+.. ...++ +||||...
T Consensus 168 LiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 168 LIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred EEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 99999963 2332233333321 12344 78888754
No 145
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0053 Score=71.23 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=93.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHh------cC---cccccHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVL------ND---RILRDVRSQL 237 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~------~~---~~~~~~~~l~ 237 (808)
.+.+.++|..|+||||+|+.+++.+.......-+ ...+.....+.+..... +. ...+.++.+.
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii 109 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREII 109 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHH
Confidence 3557899999999999999999865321110000 00000011111110000 00 0011222222
Q ss_pred HHH-----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCc-hhhhhhc-CCCeEEEecCCChhhHHHHHH
Q 041551 238 NRL-----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRD-KQVLKNC-WAGQIYQMKELVYTDAQKLFS 308 (808)
Q Consensus 238 ~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 308 (808)
+.+ ..++-++|+|+++. .+..+.|+..+......+.+|++|.+ ..+.... .....++++.++.++..+.+.
T Consensus 110 ~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~ 189 (585)
T PRK14950 110 ERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLR 189 (585)
T ss_pred HHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHH
Confidence 222 24567899999974 45577777776655556666666543 3333221 223578899999999998888
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHH
Q 041551 309 QYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVL 342 (808)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 342 (808)
+.+..... .-..+.+..+++.++|.+..+...
T Consensus 190 ~~a~~egl--~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 190 KIAAAEGI--NLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 77643221 223466788999999988655433
No 146
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.48 E-value=0.00074 Score=75.52 Aligned_cols=133 Identities=20% Similarity=0.304 Sum_probs=74.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc-----CceEEEecchhhhhccCHHHHHHHHHhhHhcCccc---ccHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF-----EGSYFAQNVREAEETGGIKDLQKELLSDVLNDRIL---RDVRSQLN 238 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~---~~~~~l~~ 238 (808)
.+-+.++|++|.|||++|+++++.+...+ ....|+.... . .+.... .+.... ..+...++
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~----~----eLl~ky----vGete~~ir~iF~~Ar~ 283 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG----P----ELLNKY----VGETERQIRLIFQRARE 283 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc----h----hhcccc----cchHHHHHHHHHHHHHH
Confidence 45688999999999999999999875542 2234443110 0 011110 000000 11112222
Q ss_pred HH-ccceEEEEEecCCCHH--------------HHHHHHhccCCCC--CCCEEEEEeCchhhhhh-c----CCCeEEEec
Q 041551 239 RL-ARKMVLLVFDDVNNPR--------------QIESLIGHLDHLA--SGSRVIITTRDKQVLKN-C----WAGQIYQMK 296 (808)
Q Consensus 239 ~L-~~~~~LlVlDdv~~~~--------------~~~~l~~~l~~~~--~gs~IiiTTR~~~v~~~-~----~~~~~~~l~ 296 (808)
.. .+++++++||+++..- .+..++..+.... .+..||.||...+.... . ..+..++++
T Consensus 284 ~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~ 363 (512)
T TIGR03689 284 KASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIE 363 (512)
T ss_pred HhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeC
Confidence 11 3478999999997421 1334444443222 33445556654433221 1 234578999
Q ss_pred CCChhhHHHHHHHHh
Q 041551 297 ELVYTDAQKLFSQYA 311 (808)
Q Consensus 297 ~L~~~ea~~Lf~~~~ 311 (808)
..+.++..++|..+.
T Consensus 364 ~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 364 RPDAEAAADIFSKYL 378 (512)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999886
No 147
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.47 E-value=0.012 Score=67.51 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=65.1
Q ss_pred cceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEe-Cchhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITT-RDKQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+++-++|+|+++. .+..+.|+..+........+|++| ....+.... .....++...++.++..+.+.+.+-...
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg-- 194 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG-- 194 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC--
Confidence 4566889999974 556777877777655566666555 444443332 2247899999999999988887764322
Q ss_pred CchHHHHHHHHHHHhcCchh-hHHHH
Q 041551 318 DSSYTELTDKAIKYAQGVPL-ALKVL 342 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glPL-al~~~ 342 (808)
..-..+....|++.++|-+- |+..+
T Consensus 195 i~i~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 195 VVVDDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22234566778889999764 44433
No 148
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.0017 Score=65.13 Aligned_cols=235 Identities=15% Similarity=0.159 Sum_probs=122.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhh-hhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREA-EETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~-~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~ 245 (808)
+--|.++|++|.||||||.-+++++...+.... ... ....++.. +...|+. .=
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts-----Gp~leK~gDlaa--------------------iLt~Le~-~D 105 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGVNLKITS-----GPALEKPGDLAA--------------------ILTNLEE-GD 105 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc-----cccccChhhHHH--------------------HHhcCCc-CC
Confidence 566899999999999999999998765433110 000 01111111 1111222 23
Q ss_pred EEEEecCCCHH-HHH-HHHhccCC--------CCCCCE-----------EEEEeCchhhhhhc--CCCeEEEecCCChhh
Q 041551 246 LLVFDDVNNPR-QIE-SLIGHLDH--------LASGSR-----------VIITTRDKQVLKNC--WAGQIYQMKELVYTD 302 (808)
Q Consensus 246 LlVlDdv~~~~-~~~-~l~~~l~~--------~~~gs~-----------IiiTTR~~~v~~~~--~~~~~~~l~~L~~~e 302 (808)
.+.+|.+.... .++ -+.++..+ .++++| |=-|||.-.+.... ....+.+++-.+.+|
T Consensus 106 VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~e 185 (332)
T COG2255 106 VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEE 185 (332)
T ss_pred eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHH
Confidence 45567775421 122 22222211 133443 33588865443322 234577899999999
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhhcCCCHHHHHHHHhh--hhcCcchhHHHHHHHhhcCC
Q 041551 303 AQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYLCGRSKEEWESAMRK--LEIIPHVEIQEVLKISYDSL 380 (808)
Q Consensus 303 a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~w~~~l~~--l~~~~~~~i~~~l~~sy~~L 380 (808)
-.+...+.+.. -..+-.++.+.+|++...|-|--..-+-... .++..+... +.....+.....|.+-=..|
T Consensus 186 L~~Iv~r~a~~--l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRV-----RDfa~V~~~~~I~~~ia~~aL~~L~Vd~~GL 258 (332)
T COG2255 186 LEEIVKRSAKI--LGIEIDEEAALEIARRSRGTPRIANRLLRRV-----RDFAQVKGDGDIDRDIADKALKMLDVDELGL 258 (332)
T ss_pred HHHHHHHHHHH--hCCCCChHHHHHHHHhccCCcHHHHHHHHHH-----HHHHHHhcCCcccHHHHHHHHHHhCcccccc
Confidence 99998887722 2234445678999999999995433222222 122221111 00001122334444444566
Q ss_pred cHHHHHHHhhhhhccCCc--chhHHHHHHhhcCCcchhh-hhhhhcccceeeecCCe
Q 041551 381 DDSQKNIFLDIACFLEGE--HRDKVISFFDASGLEAKIE-LSVLEGKSLINLDVFDQ 434 (808)
Q Consensus 381 ~~~~k~~fl~la~fp~~~--~~~~l~~~~~~~g~~~~~~-l~~L~~~sLi~~~~~~~ 434 (808)
+...++.+..+.-...|- ..+.+......+....++. =--|++.++++....|+
T Consensus 259 d~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi~RTpRGR 315 (332)
T COG2255 259 DEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFIQRTPRGR 315 (332)
T ss_pred cHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhchhhhCCCcc
Confidence 777777766665544332 3455555443322222222 23478888887665554
No 149
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.46 E-value=0.00011 Score=52.55 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=19.2
Q ss_pred ccEEEecccCCeecCcccccCCcCcEEEeecCCC
Q 041551 627 MWRLELTKVGIKELPSSIECLSNLQYLYIWDCSE 660 (808)
Q Consensus 627 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~ 660 (808)
|++|++++|+|+.+|..+++|++|+.|++++|++
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 4455555556666665566666666666666654
No 150
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.46 E-value=8.6e-05 Score=53.20 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=23.3
Q ss_pred cceEeecCCCCcccccchhhcccccceeccCCCC
Q 041551 511 KLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSE 544 (808)
Q Consensus 511 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~ 544 (808)
+|++|++++|+|+.+|+.+++|++|++|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 5677777777777777667777777777777775
No 151
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.45 E-value=6.6e-06 Score=72.72 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=55.7
Q ss_pred CCCCEEeccCCCCCCccccccccc---ccEEEecccCCeecCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEe
Q 041551 603 KHLKELSLRGCSNLKIFPEITSCH---MWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDI 679 (808)
Q Consensus 603 ~~L~~L~L~~~~~l~~~p~~~~~~---L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l 679 (808)
..|...+|++| .++.+|..+... ++.|+|++|.|+++|..+..++.|+.|+++.|++ ...|..+..|.+|-.|+.
T Consensus 53 ~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l-~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL-NAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc-ccchHHHHHHHhHHHhcC
Confidence 34445555555 344444433222 5667788888888998888899999999988887 566777777888888888
Q ss_pred ecCC
Q 041551 680 SNCS 683 (808)
Q Consensus 680 ~~c~ 683 (808)
-+|.
T Consensus 131 ~~na 134 (177)
T KOG4579|consen 131 PENA 134 (177)
T ss_pred CCCc
Confidence 7763
No 152
>PRK06526 transposase; Provisional
Probab=97.44 E-value=0.00024 Score=72.86 Aligned_cols=99 Identities=19% Similarity=0.253 Sum_probs=52.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+-+.|+|.+|+|||+||..+.++...+-..+.|+. ..++...+...... .........+. +.-+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t----------~~~l~~~l~~~~~~----~~~~~~l~~l~-~~dl 162 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT----------AAQWVARLAAAHHA----GRLQAELVKLG-RYPL 162 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhh----------HHHHHHHHHHHHhc----CcHHHHHHHhc-cCCE
Confidence 345899999999999999999987554333344433 12233333221111 11222222332 3468
Q ss_pred EEEecCCC----HHHHHHHHhccCC-CCCCCEEEEEeCch
Q 041551 247 LVFDDVNN----PRQIESLIGHLDH-LASGSRVIITTRDK 281 (808)
Q Consensus 247 lVlDdv~~----~~~~~~l~~~l~~-~~~gs~IiiTTR~~ 281 (808)
|||||+.. ....+.+...+.. ...++ +|+||...
T Consensus 163 LIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 163 LIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred EEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 99999963 2222223222211 12344 88888765
No 153
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.44 E-value=0.00037 Score=64.45 Aligned_cols=35 Identities=31% Similarity=0.350 Sum_probs=27.6
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
+.+.|+|.+|+||||+|+.++.........++++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 46889999999999999999987665543455554
No 154
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.42 E-value=0.00073 Score=74.47 Aligned_cols=128 Identities=20% Similarity=0.268 Sum_probs=73.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHH-HHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLN-RLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~-~L~~~~~ 245 (808)
.+-|.++|++|.|||++|++++++....|- .+.. + .+..... +.. ...+..+.+ ...+.+.
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~~----s------eL~~k~~----Ge~-~~~vr~lF~~A~~~~P~ 278 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETSATFL---RVVG----S------ELIQKYL----GDG-PKLVRELFRVAEENAPS 278 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEec----c------hhhhhhc----chH-HHHHHHHHHHHHhCCCc
Confidence 456789999999999999999998765541 1211 0 0111110 000 011111111 1235678
Q ss_pred EEEEecCCCHH----------------HHHHHHhccCCC--CCCCEEEEEeCchhhhhhc-----CCCeEEEecCCChhh
Q 041551 246 LLVFDDVNNPR----------------QIESLIGHLDHL--ASGSRVIITTRDKQVLKNC-----WAGQIYQMKELVYTD 302 (808)
Q Consensus 246 LlVlDdv~~~~----------------~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~e 302 (808)
+|+||+++... .+..++..+..+ ..+.+||.||...+..... ..+..++++..+.++
T Consensus 279 ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~ 358 (438)
T PTZ00361 279 IVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKT 358 (438)
T ss_pred EEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHH
Confidence 89999875310 122233333221 2356788888766544321 234678999999999
Q ss_pred HHHHHHHHhh
Q 041551 303 AQKLFSQYAF 312 (808)
Q Consensus 303 a~~Lf~~~~~ 312 (808)
..++|..++.
T Consensus 359 R~~Il~~~~~ 368 (438)
T PTZ00361 359 KRRIFEIHTS 368 (438)
T ss_pred HHHHHHHHHh
Confidence 9999988763
No 155
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.42 E-value=0.015 Score=67.41 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=63.2
Q ss_pred cceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEe-Cchhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITT-RDKQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+++-++|+|+++. .+..+.|+..+......+.+|++| +...+.... ....++++.+++.++..+.+.+.+-..+
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-- 197 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-- 197 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC--
Confidence 3556889999875 445777777776655566665544 444444332 2346899999999999998888763322
Q ss_pred CchHHHHHHHHHHHhcCchh
Q 041551 318 DSSYTELTDKAIKYAQGVPL 337 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glPL 337 (808)
.....+.+..|++.++|-.-
T Consensus 198 i~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 198 ITAEPEALNVIAQKADGGMR 217 (614)
T ss_pred CCCCHHHHHHHHHHcCCCHH
Confidence 22334567889999998654
No 156
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.41 E-value=0.00024 Score=65.00 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=42.6
Q ss_pred ccEEecCccccCCCC-hHHHHHHHHHhC-------Ccc----------eEeeC-CcCCCCcchHHHHHHHHhhcceeEEe
Q 041551 25 YDVFLSFRGEDTRDN-FTSHLYSALWHN-------NIE----------TFIDN-DLKRGDEISQSLLDTIEASAISIIIF 85 (808)
Q Consensus 25 ~dvflSy~~~D~~~~-f~~~l~~~l~~~-------g~~----------~~~d~-~l~~g~~~~~~i~~ai~~s~~~v~v~ 85 (808)
|.|||||+++| +. ....|...+... .+. .+.+. +....+.+...|.++|.+|.+.|+++
T Consensus 1 ~~vFIS~~~~d--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLi 78 (130)
T PF08937_consen 1 YKVFISYSHDD--DDWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLI 78 (130)
T ss_dssp ----------T--HH-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE-
T ss_pred CCccccccccC--cHHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEe
Confidence 57999999999 44 666666666652 221 11222 33445688999999999999999999
Q ss_pred cccccchhhhHHHHHHHHH
Q 041551 86 SERYASSGWCLDELSKIFE 104 (808)
Q Consensus 86 S~~y~~s~~c~~el~~~~~ 104 (808)
+++-..|.|+-.|+..+++
T Consensus 79 g~~T~~s~wV~~EI~~A~~ 97 (130)
T PF08937_consen 79 GPNTAKSKWVNWEIEYALK 97 (130)
T ss_dssp -TT----HHHHHHHHHHTT
T ss_pred CCCcccCcHHHHHHHHHHH
Confidence 9999999999999997665
No 157
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.41 E-value=0.00026 Score=68.53 Aligned_cols=72 Identities=32% Similarity=0.393 Sum_probs=42.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
..-+.++|..|+|||.||.++++....+=..+.|+. ..++...+-.. ........+.+.+.+ -=|
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~----------~~~L~~~l~~~----~~~~~~~~~~~~l~~-~dl 111 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT----------ASDLLDELKQS----RSDGSYEELLKRLKR-VDL 111 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE----------HHHHHHHHHCC----HCCTTHCHHHHHHHT-SSC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee----------cCceecccccc----ccccchhhhcCcccc-ccE
Confidence 345899999999999999999997655444466665 22334333222 111222334444543 357
Q ss_pred EEEecCC
Q 041551 247 LVFDDVN 253 (808)
Q Consensus 247 lVlDdv~ 253 (808)
|||||+-
T Consensus 112 LilDDlG 118 (178)
T PF01695_consen 112 LILDDLG 118 (178)
T ss_dssp EEEETCT
T ss_pred ecccccc
Confidence 7899985
No 158
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.37 E-value=0.0023 Score=68.68 Aligned_cols=122 Identities=16% Similarity=0.204 Sum_probs=67.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHH--Hccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNR--LARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~--L~~~~ 244 (808)
..++.++|.+|+||||+|+.+++..... ...+... . .....+...+ .. +... +...+
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~~~----~-~~~~~i~~~l-~~------------~~~~~~~~~~~ 101 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVNGS----D-CRIDFVRNRL-TR------------FASTVSLTGGG 101 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEeccC----c-ccHHHHHHHH-HH------------HHHhhcccCCC
Confidence 4567779999999999999999876332 2233211 1 1111111111 11 0111 12345
Q ss_pred EEEEEecCCCH---HHHHHHHhccCCCCCCCEEEEEeCchhhh-hhc-CCCeEEEecCCChhhHHHHHHH
Q 041551 245 VLLVFDDVNNP---RQIESLIGHLDHLASGSRVIITTRDKQVL-KNC-WAGQIYQMKELVYTDAQKLFSQ 309 (808)
Q Consensus 245 ~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~IiiTTR~~~v~-~~~-~~~~~~~l~~L~~~ea~~Lf~~ 309 (808)
-++|+||++.. +..+.+...+.....++++|+||...... ... .....+.++..+.++..+++..
T Consensus 102 ~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 102 KVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 67899999754 23334444344445678888888654321 111 1224677778888887776654
No 159
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.35 E-value=0.0066 Score=67.88 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=63.1
Q ss_pred cceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEeCc-hhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITTRD-KQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+.+-++|+|+++.. +..+.|...+........+|++|.. ..+.... .....+++.+++.++..+.+...+-..+
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-- 197 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-- 197 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--
Confidence 56678899998743 4566676666655556666666643 3332221 2246789999999999988887763221
Q ss_pred CchHHHHHHHHHHHhcCch-hhHHH
Q 041551 318 DSSYTELTDKAIKYAQGVP-LALKV 341 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glP-Lal~~ 341 (808)
..-..+.++.+++.++|.+ .|+..
T Consensus 198 ~~i~~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 198 IETSREALLPIARAAQGSLRDAESL 222 (451)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2234566788999999865 34433
No 160
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0036 Score=67.75 Aligned_cols=143 Identities=16% Similarity=0.224 Sum_probs=84.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHH----Hcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNR----LAR 242 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~----L~~ 242 (808)
...+.+.|++|+|||+||.+++. ...|+.+--++. ...-++ .+......+++. -+.
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiSp----e~miG~--------------sEsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIISP----EDMIGL--------------SESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeCh----HHccCc--------------cHHHHHHHHHHHHHHhhcC
Confidence 66788999999999999999986 567887665541 111111 111222223222 244
Q ss_pred ceEEEEEecCCCHHH------------HHHHHhccCCC-CCCCE--EEEEeCchhhhhhcCC----CeEEEecCCCh-hh
Q 041551 243 KMVLLVFDDVNNPRQ------------IESLIGHLDHL-ASGSR--VIITTRDKQVLKNCWA----GQIYQMKELVY-TD 302 (808)
Q Consensus 243 ~~~LlVlDdv~~~~~------------~~~l~~~l~~~-~~gs~--IiiTTR~~~v~~~~~~----~~~~~l~~L~~-~e 302 (808)
.--.||+||+...-+ ++.++-.+... ..|-| |+-||....++..|+. ...+.|+.++. ++
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence 557899999975333 33333333322 23444 4448888888888753 46789999987 66
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHh
Q 041551 303 AQKLFSQYAFRGGHLDSSYTELTDKAIKYA 332 (808)
Q Consensus 303 a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~ 332 (808)
..+.+...- ...+...+..+++...+|
T Consensus 678 ~~~vl~~~n---~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 678 LLEVLEELN---IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHcc---CCCcchhHHHHHHHhccc
Confidence 666665432 112333344445555444
No 161
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.31 E-value=0.028 Score=65.31 Aligned_cols=164 Identities=15% Similarity=0.171 Sum_probs=89.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHh------cCcc---cccHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVL------NDRI---LRDVRSQLN 238 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~------~~~~---~~~~~~l~~ 238 (808)
+.+.++|..|+||||+|+.+++.+-....... . ....+.-...+.+..... .... .+.++.+.+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~------~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~ 111 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T------PEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIE 111 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C------CCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHH
Confidence 45789999999999999999986533210000 0 000000011111100000 0000 012222222
Q ss_pred HH-----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCc-hhhhhhc-CCCeEEEecCCChhhHHHHHHH
Q 041551 239 RL-----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRD-KQVLKNC-WAGQIYQMKELVYTDAQKLFSQ 309 (808)
Q Consensus 239 ~L-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~ 309 (808)
.+ .+++-++|+|+++. .+..+.|+..+........+|++|.+ ..+.... .....+++..++.++..+.+.+
T Consensus 112 ~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ 191 (620)
T PRK14948 112 RAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSE 191 (620)
T ss_pred HHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHH
Confidence 22 24556889999985 45677787777654455555555443 3333222 2346788889999998888877
Q ss_pred HhhcCCCCCchHHHHHHHHHHHhcCchhhHH
Q 041551 310 YAFRGGHLDSSYTELTDKAIKYAQGVPLALK 340 (808)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 340 (808)
.+.... ..-..+.+..|++.++|.+..+.
T Consensus 192 ia~keg--i~is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 192 IAEKES--IEIEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHHHhC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 663221 12223557889999999775443
No 162
>PRK06921 hypothetical protein; Provisional
Probab=97.29 E-value=0.0006 Score=70.54 Aligned_cols=36 Identities=28% Similarity=0.247 Sum_probs=29.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc-cCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~ 202 (808)
...+.++|..|+|||.||.++++.+..+ -..++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 3458899999999999999999987665 45567766
No 163
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.017 Score=61.26 Aligned_cols=169 Identities=13% Similarity=0.114 Sum_probs=94.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc---------------ccCceEEEecchhhhhccCHHHHHHHHH--hhHhcCcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR---------------HFEGSYFAQNVREAEETGGIKDLQKELL--SDVLNDRI 229 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~---------------~F~~~~~~~~~~~~~~~~~~~~l~~~ll--~~~~~~~~ 229 (808)
.+...++|..|+||+++|..+++.+-. .++...|+.-.........-........ ......-.
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~ 105 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIR 105 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCc
Confidence 467889999999999999999986421 2344455432100000000000000000 00000000
Q ss_pred cccHHHHHHHH-----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEe-Cchhhhhhc-CCCeEEEecCCCh
Q 041551 230 LRDVRSQLNRL-----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITT-RDKQVLKNC-WAGQIYQMKELVY 300 (808)
Q Consensus 230 ~~~~~~l~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~~l~~L~~ 300 (808)
.+.++.+.+.+ .+.+-++|+|+++. ....+.++..+...+ .+.+|++| ....+.... .....+++.+++.
T Consensus 106 id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~ 184 (314)
T PRK07399 106 LEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSD 184 (314)
T ss_pred HHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCH
Confidence 13344454444 34667899999875 455677777775545 44555554 444444432 2347889999999
Q ss_pred hhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHH
Q 041551 301 TDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKV 341 (808)
Q Consensus 301 ~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 341 (808)
++..+.+...... . ........++..++|.|.....
T Consensus 185 ~~~~~~L~~~~~~--~---~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 185 EQLEQVLKRLGDE--E---ILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred HHHHHHHHHhhcc--c---cchhHHHHHHHHcCCCHHHHHH
Confidence 9999999876521 1 1111135788999999966544
No 164
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.26 E-value=0.027 Score=64.55 Aligned_cols=162 Identities=12% Similarity=0.120 Sum_probs=91.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc-----cCceEEEecchhhhh--ccCHHHHHHHHHhhHhcCc--ccccHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH-----FEGSYFAQNVREAEE--TGGIKDLQKELLSDVLNDR--ILRDVRSQL 237 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-----F~~~~~~~~~~~~~~--~~~~~~l~~~ll~~~~~~~--~~~~~~~l~ 237 (808)
.+.+.++|..|+||||+|+.+++.+-.. +++..--.. +.... ..++.. +.+.. ..+.++.+.
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C-~~i~~~~~~dv~~--------idgas~~~vddIr~l~ 108 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC-KSIDNDNSLDVIE--------IDGASNTSVQDVRQIK 108 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH-HHHHcCCCCCeEE--------ecCcccCCHHHHHHHH
Confidence 4568899999999999999999865321 111000000 00000 000000 00000 011222222
Q ss_pred HH-----HccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCc-hhhhhhc-CCCeEEEecCCChhhHHHHHH
Q 041551 238 NR-----LARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRD-KQVLKNC-WAGQIYQMKELVYTDAQKLFS 308 (808)
Q Consensus 238 ~~-----L~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 308 (808)
+. ..+++-++|+|+++. ...++.|+..+......+.+|++|.+ ..+.... .....++..+++.++..+.+.
T Consensus 109 e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~ 188 (563)
T PRK06647 109 EEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLK 188 (563)
T ss_pred HHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHH
Confidence 21 135666899999975 44577787777665566666665543 3333221 223578999999999998888
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHhcCchhhH
Q 041551 309 QYAFRGGHLDSSYTELTDKAIKYAQGVPLAL 339 (808)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLal 339 (808)
+.+.... ..-..+.+..|++.++|.+-.+
T Consensus 189 ~i~~~eg--i~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 189 KVCLEDQ--IKYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 8764322 2234566778899999977543
No 165
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.25 E-value=0.00012 Score=85.40 Aligned_cols=83 Identities=24% Similarity=0.313 Sum_probs=43.4
Q ss_pred ccCcccceEeecCCCCcc--cccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCc-cccccccCCCCc
Q 041551 506 NICAEKLVSLKMPRSKVQ--QLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLV-ETHSTIQYLNKL 582 (808)
Q Consensus 506 ~~~~~~L~~L~L~~n~l~--~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~-~~p~~~~~l~~L 582 (808)
...++.|++|.+.+-.+. ++..-..+++||..||+|+++ ++.+.++++|++|+.|.+.+=.... .--..+.+|++|
T Consensus 144 g~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 344556666666554443 222334556666666666663 3444446666666666665422111 111235566666
Q ss_pred CEEecCC
Q 041551 583 EDLDLDY 589 (808)
Q Consensus 583 ~~L~l~~ 589 (808)
++||+|.
T Consensus 223 ~vLDIS~ 229 (699)
T KOG3665|consen 223 RVLDISR 229 (699)
T ss_pred Ceeeccc
Confidence 6666665
No 166
>PRK12377 putative replication protein; Provisional
Probab=97.25 E-value=0.0015 Score=66.42 Aligned_cols=72 Identities=24% Similarity=0.260 Sum_probs=45.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
...+.++|.+|+|||.||.++++.+..+...+.|+.. .++...+....... .....+.+.+ .+--|
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~----------~~l~~~l~~~~~~~---~~~~~~l~~l-~~~dL 166 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV----------PDVMSRLHESYDNG---QSGEKFLQEL-CKVDL 166 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH----------HHHHHHHHHHHhcc---chHHHHHHHh-cCCCE
Confidence 3568899999999999999999987766556677652 12333332221111 1112233333 35568
Q ss_pred EEEecC
Q 041551 247 LVFDDV 252 (808)
Q Consensus 247 lVlDdv 252 (808)
|||||+
T Consensus 167 LiIDDl 172 (248)
T PRK12377 167 LVLDEI 172 (248)
T ss_pred EEEcCC
Confidence 999999
No 167
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.24 E-value=0.0037 Score=70.06 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=79.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHH-HccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNR-LARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~-L~~~~~ 245 (808)
.+-|.++|++|.|||.+|+++++.....| +-+. .. . +.....+... ..++.+.+. -...++
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~---~~l~-~~---------~----l~~~~vGese-~~l~~~f~~A~~~~P~ 320 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPL---LRLD-VG---------K----LFGGIVGESE-SRMRQMIRIAEALSPC 320 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCE---EEEE-hH---------H----hcccccChHH-HHHHHHHHHHHhcCCc
Confidence 56688999999999999999998754332 1111 10 0 1111111110 111222111 134789
Q ss_pred EEEEecCCCHH--------------HHHHHHhccCCCCCCCEEEEEeCchhhhh-h----cCCCeEEEecCCChhhHHHH
Q 041551 246 LLVFDDVNNPR--------------QIESLIGHLDHLASGSRVIITTRDKQVLK-N----CWAGQIYQMKELVYTDAQKL 306 (808)
Q Consensus 246 LlVlDdv~~~~--------------~~~~l~~~l~~~~~gs~IiiTTR~~~v~~-~----~~~~~~~~l~~L~~~ea~~L 306 (808)
+|++|+++..- .+..+...+.....+--||.||...+... . -..+..+.++.-+.++-.++
T Consensus 321 IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~I 400 (489)
T CHL00195 321 ILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKI 400 (489)
T ss_pred EEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHH
Confidence 99999987421 12223332222233444556776554222 1 13456888998899999999
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHhcCch
Q 041551 307 FSQYAFRGGHLDSSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 307 f~~~~~~~~~~~~~~~~~~~~i~~~~~glP 336 (808)
|..+..+..... ........+++.+.|.-
T Consensus 401 l~~~l~~~~~~~-~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 401 FKIHLQKFRPKS-WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHhhcCCCc-ccccCHHHHHhhcCCCC
Confidence 988774322111 00112345566665543
No 168
>CHL00176 ftsH cell division protein; Validated
Probab=97.22 E-value=0.0048 Score=71.55 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=81.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHH-HHHHHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRS-QLNRLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~-l~~~L~~~~~ 245 (808)
.+-|.++|++|.|||+||++++...... |+... .+ .+.... .+.. ...++. +.......+.
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~is--~s------~f~~~~----~g~~-~~~vr~lF~~A~~~~P~ 277 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFSIS--GS------EFVEMF----VGVG-AARVRDLFKKAKENSPC 277 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC-----eeecc--HH------HHHHHh----hhhh-HHHHHHHHHHHhcCCCc
Confidence 4568999999999999999999865322 22210 00 011100 0000 011222 2223346789
Q ss_pred EEEEecCCCH----------------HHHHHHHhccCCC--CCCCEEEEEeCchhhhhh-c----CCCeEEEecCCChhh
Q 041551 246 LLVFDDVNNP----------------RQIESLIGHLDHL--ASGSRVIITTRDKQVLKN-C----WAGQIYQMKELVYTD 302 (808)
Q Consensus 246 LlVlDdv~~~----------------~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~e 302 (808)
+|+|||++.. ..+..++..+... ..+-.||.||...+.... . ..+..+.++..+.++
T Consensus 278 ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~ 357 (638)
T CHL00176 278 IVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREG 357 (638)
T ss_pred EEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHH
Confidence 9999999643 1244444333322 234556667766543321 1 234678899999999
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC
Q 041551 303 AQKLFSQYAFRGGHLDSSYTELTDKAIKYAQG 334 (808)
Q Consensus 303 a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g 334 (808)
-.+++..++-... .........+++.+.|
T Consensus 358 R~~IL~~~l~~~~---~~~d~~l~~lA~~t~G 386 (638)
T CHL00176 358 RLDILKVHARNKK---LSPDVSLELIARRTPG 386 (638)
T ss_pred HHHHHHHHHhhcc---cchhHHHHHHHhcCCC
Confidence 9999988874311 1112334566777766
No 169
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0084 Score=64.86 Aligned_cols=248 Identities=18% Similarity=0.221 Sum_probs=131.1
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhcccCc--eEEEecchhhhhccCHHHHHHHHHhhHhcCcc-----cccHHHHHHHHc-
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISRHFEG--SYFAQNVREAEETGGIKDLQKELLSDVLNDRI-----LRDVRSQLNRLA- 241 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~~F~~--~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~~~~~~l~~~L~- 241 (808)
+.|+|.+|.|||+.++.+.+++...... .+++.+. ......++...++..+..... .+..+.+.+.+.
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~----~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~ 120 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCL----ELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK 120 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeee----eCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh
Confidence 8899999999999999999987665443 4677643 334555666666665532222 155566666664
Q ss_pred -cceEEEEEecCCCHH-----HHHHHHhccCCCCCCCEEEE--EeCchhhhhhcC-------CCeEEEecCCChhhHHHH
Q 041551 242 -RKMVLLVFDDVNNPR-----QIESLIGHLDHLASGSRVII--TTRDKQVLKNCW-------AGQIYQMKELVYTDAQKL 306 (808)
Q Consensus 242 -~~~~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~Iii--TTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~L 306 (808)
++.+++|||+++... .+-.|....... .++|++ .+-+.+...... ....+..++-+.+|-.+.
T Consensus 121 ~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~I 198 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDI 198 (366)
T ss_pred cCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHH
Confidence 578999999997532 222333222211 454433 444433322211 123367888899998888
Q ss_pred HHHHhh---cCCCCCchHHHHHHHHHHHhcC-chhhHHHHhhh--hcCC------CHHHHHHHHhhhhcCcchhHHHHHH
Q 041551 307 FSQYAF---RGGHLDSSYTELTDKAIKYAQG-VPLALKVLGCY--LCGR------SKEEWESAMRKLEIIPHVEIQEVLK 374 (808)
Q Consensus 307 f~~~~~---~~~~~~~~~~~~~~~i~~~~~g-lPLal~~~~~~--L~~~------~~~~w~~~l~~l~~~~~~~i~~~l~ 374 (808)
+..++- ......+..-++...++..-+| --.||.++-.. ++.+ +.+.-..+..... .....
T Consensus 199 l~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~-------~~~~~ 271 (366)
T COG1474 199 LRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIE-------RDVLE 271 (366)
T ss_pred HHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhh-------HHHHH
Confidence 888773 2233344444444444444443 34444443322 2210 1222222211111 12233
Q ss_pred HhhcCCcHHHHHHHhhhhhccCCcchhHH----HHHHhhcCC---cchhhhhhhhcccceeee
Q 041551 375 ISYDSLDDSQKNIFLDIACFLEGEHRDKV----ISFFDASGL---EAKIELSVLEGKSLINLD 430 (808)
Q Consensus 375 ~sy~~L~~~~k~~fl~la~fp~~~~~~~l----~~~~~~~g~---~~~~~l~~L~~~sLi~~~ 430 (808)
-....|+.+.|..+..++..-.+.....+ ..+-...+. .....+..|...+++...
T Consensus 272 ~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 272 EVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFSDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHHHHHHHHHhcCeEEee
Confidence 34678888888776666555333333222 222222222 112235666666776543
No 170
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.032 Score=59.08 Aligned_cols=156 Identities=14% Similarity=0.158 Sum_probs=92.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc------------------cCceEEEecchhhhhccCHHHHHHHHHhhHhcCc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH------------------FEGSYFAQNVREAEETGGIKDLQKELLSDVLNDR 228 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~------------------F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~ 228 (808)
...+.++|+.|+||+++|..+++.+-.. .+...|+.-..+ ..+. .....-
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~---~~~~---------k~~~~I 93 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPN---RTGD---------KLRTEI 93 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCC---cccc---------cccccc
Confidence 4468899999999999999999854221 111122210000 0000 000000
Q ss_pred ccccHHHHHHHH-----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCch-hhhhhc-CCCeEEEecCCC
Q 041551 229 ILRDVRSQLNRL-----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDK-QVLKNC-WAGQIYQMKELV 299 (808)
Q Consensus 229 ~~~~~~~l~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~ 299 (808)
..+.++.+.+.+ .+++-++|+|+++. ...-+.++..+.....++.+|++|.+. .+.... .-...+.+.+++
T Consensus 94 ~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~ 173 (319)
T PRK08769 94 VIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPP 173 (319)
T ss_pred cHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcC
Confidence 012333343333 24567899999985 455677777776666788777777654 344332 224678999999
Q ss_pred hhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHH
Q 041551 300 YTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVL 342 (808)
Q Consensus 300 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 342 (808)
.+++.+.+.... ...+.+..++..++|.|+....+
T Consensus 174 ~~~~~~~L~~~~--------~~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 174 AHEALAWLLAQG--------VSERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHHHHHHHHHcC--------CChHHHHHHHHHcCCCHHHHHHH
Confidence 999998886531 11233667899999999865443
No 171
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.18 E-value=0.0046 Score=70.52 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=78.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHH-HHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLN-RLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~-~L~~~~~ 245 (808)
.+-+.++|++|.|||+||+.+++.....| +... ...+.... .+.. ...++.+.+ .....+.
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~-----~~i~--------~~~~~~~~----~g~~-~~~l~~~f~~a~~~~p~ 149 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FSIS--------GSDFVEMF----VGVG-ASRVRDLFEQAKKNAPC 149 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCe-----eecc--------HHHHHHHH----hccc-HHHHHHHHHHHHhcCCC
Confidence 34588999999999999999998653322 1110 00111111 0100 111222222 2235678
Q ss_pred EEEEecCCCH----------------HHHHHHHhccCCC--CCCCEEEEEeCchhhhhh-----cCCCeEEEecCCChhh
Q 041551 246 LLVFDDVNNP----------------RQIESLIGHLDHL--ASGSRVIITTRDKQVLKN-----CWAGQIYQMKELVYTD 302 (808)
Q Consensus 246 LlVlDdv~~~----------------~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~e 302 (808)
+|+|||++.. ..+..++..+... ..+-.||.||...+.... ...+..+.++..+.++
T Consensus 150 Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~ 229 (495)
T TIGR01241 150 IIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKG 229 (495)
T ss_pred EEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHH
Confidence 9999999542 1133343333322 223445556655432211 1245678899999988
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCc
Q 041551 303 AQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGV 335 (808)
Q Consensus 303 a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~gl 335 (808)
-.++|..+....... . ......+++.+.|.
T Consensus 230 R~~il~~~l~~~~~~-~--~~~l~~la~~t~G~ 259 (495)
T TIGR01241 230 REEILKVHAKNKKLA-P--DVDLKAVARRTPGF 259 (495)
T ss_pred HHHHHHHHHhcCCCC-c--chhHHHHHHhCCCC
Confidence 899988776332211 1 12234677777764
No 172
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.18 E-value=2.7e-05 Score=81.41 Aligned_cols=80 Identities=25% Similarity=0.302 Sum_probs=46.9
Q ss_pred CCceeEEEecCCCCC-C-----cccCcccceEeecCC-CCcccc--cchhhcccccceeccCCCCCCCCCC---CCCCCC
Q 041551 489 FAEVRHLEWARCPLK-T-----LNICAEKLVSLKMPR-SKVQQL--WDDVQDLVNLKEIDLSRSESLTKLP---DLSRAK 556 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~-~-----l~~~~~~L~~L~L~~-n~l~~l--~~~~~~l~~L~~L~L~~n~~~~~~p---~~~~l~ 556 (808)
.+++..|.+.+|..- . +...+.+|+.|+|.. ..++.. -.....+++|++|++++|..+..-. -..++.
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~ 242 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCK 242 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccch
Confidence 455666666666411 1 133566777777777 344422 1234568888888888886554411 145666
Q ss_pred CCcEEecCCCCC
Q 041551 557 NLEILWLRGCLS 568 (808)
Q Consensus 557 ~L~~L~L~~n~~ 568 (808)
+|+.+.+.||..
T Consensus 243 ~l~~~~~kGC~e 254 (483)
T KOG4341|consen 243 ELEKLSLKGCLE 254 (483)
T ss_pred hhhhhhhccccc
Confidence 677777777643
No 173
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.18 E-value=0.00055 Score=65.05 Aligned_cols=102 Identities=20% Similarity=0.233 Sum_probs=57.5
Q ss_pred CcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCC-CCCCCCcEEecCCCCCCcccc--ccccCCCCcCE
Q 041551 508 CAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDL-SRAKNLEILWLRGCLSLVETH--STIQYLNKLED 584 (808)
Q Consensus 508 ~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~l~~L~~L~L~~n~~l~~~p--~~~~~l~~L~~ 584 (808)
...+...+||++|.+..+ ..|..++.|.+|.|++|.++..-|.+ .-+++|..|.|.+|+ +.++- ..+..+++|++
T Consensus 40 ~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccce
Confidence 344556667777766655 24556667777777777655555553 335667777777663 22221 12455666777
Q ss_pred EecCCCCCCCcCCCc---C--CCCCCCEEeccC
Q 041551 585 LDLDYCISLTSLPTS---I--HSKHLKELSLRG 612 (808)
Q Consensus 585 L~l~~~~~l~~lp~~---~--~l~~L~~L~L~~ 612 (808)
|.+-+|. ++..+.. + .+++|+.||+.+
T Consensus 118 Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 7666642 3333321 1 456677776654
No 174
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.14 E-value=0.0024 Score=64.87 Aligned_cols=74 Identities=23% Similarity=0.293 Sum_probs=45.8
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLL 247 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~Ll 247 (808)
..+.++|.+|+|||+||.++++.+..+-..++++. ..++...+-..... .......+.+.+. +.=+|
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it----------~~~l~~~l~~~~~~--~~~~~~~~l~~l~-~~dlL 166 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT----------VADIMSAMKDTFSN--SETSEEQLLNDLS-NVDLL 166 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE----------HHHHHHHHHHHHhh--ccccHHHHHHHhc-cCCEE
Confidence 46889999999999999999998766555566664 12333333222211 1112334455555 34588
Q ss_pred EEecCCC
Q 041551 248 VFDDVNN 254 (808)
Q Consensus 248 VlDdv~~ 254 (808)
||||+..
T Consensus 167 vIDDig~ 173 (244)
T PRK07952 167 VIDEIGV 173 (244)
T ss_pred EEeCCCC
Confidence 8899853
No 175
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.13 E-value=0.023 Score=56.58 Aligned_cols=173 Identities=16% Similarity=0.150 Sum_probs=95.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCccc---ccHHHHHHH----
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRIL---RDVRSQLNR---- 239 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~---~~~~~l~~~---- 239 (808)
-.++.++|.-|.|||.++++......+.=-+++.+. ........+...+..++...+.. ...+++.+.
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 447899999999999999955544332212222332 22333444555555554442221 122222222
Q ss_pred H-ccce-EEEEEecCCCH--HHHHHHHhcc---CCC-CCCCEEEEE--e-Cch---hhhhhcC-CCeE-EEecCCChhhH
Q 041551 240 L-ARKM-VLLVFDDVNNP--RQIESLIGHL---DHL-ASGSRVIIT--T-RDK---QVLKNCW-AGQI-YQMKELVYTDA 303 (808)
Q Consensus 240 L-~~~~-~LlVlDdv~~~--~~~~~l~~~l---~~~-~~gs~IiiT--T-R~~---~v~~~~~-~~~~-~~l~~L~~~ea 303 (808)
. ++++ +.+++|+..+. +.++.+.-.. ... ++-+.+++- + |.. .+..... ...+ |++.|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 2 4667 99999998653 3344433221 111 122233331 1 110 0111111 1134 89999999999
Q ss_pred HHHHHHHhhcCCCCCchH-HHHHHHHHHHhcCchhhHHHHhh
Q 041551 304 QKLFSQYAFRGGHLDSSY-TELTDKAIKYAQGVPLALKVLGC 344 (808)
Q Consensus 304 ~~Lf~~~~~~~~~~~~~~-~~~~~~i~~~~~glPLal~~~~~ 344 (808)
..++..+..+...+.+-+ .+....|.....|.|.+|..++.
T Consensus 206 ~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 206 GLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999888876554444443 34556788888999999987763
No 176
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.003 Score=64.32 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=49.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH----hhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK----ISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLAR 242 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~----~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~ 242 (808)
-|+|.++|++|.|||+|.++++.+ ..++|.....+.. +-..+..+++++... -....++.+.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi--------nshsLFSKWFsESgK-lV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI--------NSHSLFSKWFSESGK-LVAKMFQKIQELVED 247 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE--------ehhHHHHHHHhhhhh-HHHHHHHHHHHHHhC
Confidence 578999999999999999999995 3455666555542 122344444443211 111334555555544
Q ss_pred ce--EEEEEecCCC
Q 041551 243 KM--VLLVFDDVNN 254 (808)
Q Consensus 243 ~~--~LlVlDdv~~ 254 (808)
+. +++.+|.|.+
T Consensus 248 ~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 248 RGNLVFVLIDEVES 261 (423)
T ss_pred CCcEEEEEeHHHHH
Confidence 43 6677899865
No 177
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.12 E-value=2.9e-05 Score=68.78 Aligned_cols=106 Identities=19% Similarity=0.261 Sum_probs=73.9
Q ss_pred ceeEEEecCCCCCCc------ccCcccceEeecCCCCcccccchhh-cccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 491 EVRHLEWARCPLKTL------NICAEKLVSLKMPRSKVQQLWDDVQ-DLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 491 ~Lr~L~l~~~~l~~l------~~~~~~L~~L~L~~n~l~~l~~~~~-~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
.+..+++++|++-.+ ......|+..+|++|.+..+|+.|. .++.++.|+|++|. +..+|. +..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcc
Confidence 344567777776654 3344567777888888888887754 44578888888885 556664 88888888888
Q ss_pred cCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCc
Q 041551 563 LRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTS 599 (808)
Q Consensus 563 L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~ 599 (808)
++.| .+...|..+..|.+|-.|+..+| -...+|..
T Consensus 107 l~~N-~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 107 LRFN-PLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred cccC-ccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 8887 44456677777888888887774 45555543
No 178
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.025 Score=65.38 Aligned_cols=99 Identities=14% Similarity=0.166 Sum_probs=62.3
Q ss_pred cceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEe-Cchhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITT-RDKQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+++-++|+|+++. ....+.|+..+......+.+|++| ....+.... .....++..+++.++..+.+...+-...
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-- 195 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG-- 195 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--
Confidence 4456789999975 345677777766555566666544 444444332 2235788999999998888877663221
Q ss_pred CchHHHHHHHHHHHhcCch-hhHHHH
Q 041551 318 DSSYTELTDKAIKYAQGVP-LALKVL 342 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glP-Lal~~~ 342 (808)
..-..+.+..|++.++|.. .|+..+
T Consensus 196 i~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 196 ISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2233456778888998854 444443
No 179
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.00015 Score=72.62 Aligned_cols=187 Identities=13% Similarity=0.104 Sum_probs=108.5
Q ss_pred CCceeEEEecCCCCCCc------ccCcccceEeecCCCCcccccchh-hcccccceeccCCCCCCCCCC-C-CCCCCCCc
Q 041551 489 FAEVRHLEWARCPLKTL------NICAEKLVSLKMPRSKVQQLWDDV-QDLVNLKEIDLSRSESLTKLP-D-LSRAKNLE 559 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l------~~~~~~L~~L~L~~n~l~~l~~~~-~~l~~L~~L~L~~n~~~~~~p-~-~~~l~~L~ 559 (808)
.+.++.|++.+|.++.. ..+++.|+.|+|+.|.+.+....+ ..+.+|++|-|.+..+.-.-. . +..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 45677788888887765 456788888888888876443333 356788888887775432222 1 56777777
Q ss_pred EEecCCCCCCcc-c-cccccCC-CCcCEEecCCCCCCCcCC--CcC-CCCCCCEEeccCC--------CCCCcccccccc
Q 041551 560 ILWLRGCLSLVE-T-HSTIQYL-NKLEDLDLDYCISLTSLP--TSI-HSKHLKELSLRGC--------SNLKIFPEITSC 625 (808)
Q Consensus 560 ~L~L~~n~~l~~-~-p~~~~~l-~~L~~L~l~~~~~l~~lp--~~~-~l~~L~~L~L~~~--------~~l~~~p~~~~~ 625 (808)
.|.++.|..-.. + ...+... +.+++|....|....-.. ... -.+++..+.+..| ...+.+|..
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~--- 226 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL--- 226 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc---
Confidence 887777621100 0 0111111 234444444432100000 000 1255565655555 233334433
Q ss_pred cccEEEecccCCeecC--cccccCCcCcEEEeecCCCcccccc------cccCCCCCCEEEee
Q 041551 626 HMWRLELTKVGIKELP--SSIECLSNLQYLYIWDCSELESISS------SIFKLNSLESIDIS 680 (808)
Q Consensus 626 ~L~~L~L~~n~i~~lp--~~~~~l~~L~~L~L~~n~~l~~lp~------~~~~l~~L~~L~l~ 680 (808)
.-|+|+.|+|.... +.+..++.|..|.++++++...+-. -++.|++++.|+=+
T Consensus 227 --~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 227 --SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred --hhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 34788888887653 3478899999999999998765532 25667777777644
No 180
>PRK08118 topology modulation protein; Reviewed
Probab=97.09 E-value=0.00074 Score=64.74 Aligned_cols=33 Identities=30% Similarity=0.580 Sum_probs=26.4
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhc---ccCceEEE
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISR---HFEGSYFA 201 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~---~F~~~~~~ 201 (808)
.|.|+|++|+||||||++++++..- +|+..+|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 4889999999999999999997543 46666653
No 181
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.06 E-value=0.0011 Score=62.99 Aligned_cols=55 Identities=25% Similarity=0.358 Sum_probs=30.7
Q ss_pred cccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccc-cCCCCcCEEecCC
Q 041551 533 VNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTI-QYLNKLEDLDLDY 589 (808)
Q Consensus 533 ~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~-~~l~~L~~L~l~~ 589 (808)
.+...+||++|. +..++.|..++.|.+|.|++|... .+.+.+ ..+++|..|.|.+
T Consensus 42 d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccceecccccc-hhhcccCCCccccceEEecCCcce-eeccchhhhccccceEEecC
Confidence 345667777774 455555666677777777666333 333333 2344455555555
No 182
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.05 E-value=0.011 Score=62.57 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=25.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
.+.++|||++|.|||.+|++++++....
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 7789999999999999999999987554
No 183
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.02 E-value=0.02 Score=60.68 Aligned_cols=160 Identities=11% Similarity=0.077 Sum_probs=91.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc-----CceEE-EecchhhhhccCHHHHHHHHHhhHhcC-cccccHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF-----EGSYF-AQNVREAEETGGIKDLQKELLSDVLND-RILRDVRSQLNR 239 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F-----~~~~~-~~~~~~~~~~~~~~~l~~~ll~~~~~~-~~~~~~~~l~~~ 239 (808)
.+...++|+.|+||+++|+.++..+--.- .+... .+..-.....+++..+.. ..+. -..+.++.+.+.
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-----~~~~~I~id~iR~l~~~ 98 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP-----IDNKDIGVDQVREINEK 98 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc-----ccCCCCCHHHHHHHHHH
Confidence 34577999999999999999998542211 00000 000000000111100000 0000 011333444344
Q ss_pred H-----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCch-hhhhhc-CCCeEEEecCCChhhHHHHHHHH
Q 041551 240 L-----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDK-QVLKNC-WAGQIYQMKELVYTDAQKLFSQY 310 (808)
Q Consensus 240 L-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 310 (808)
+ .+++-.+|+|+++. .+..+.++..+....+++.+|++|.+. .+.... .-...+.+.+++.+++.+.+...
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred HhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHH
Confidence 3 25566888999985 456788888887767788777777665 444332 22468899999999999988775
Q ss_pred hhcCCCCCchHHHHHHHHHHHhcCchhh
Q 041551 311 AFRGGHLDSSYTELTDKAIKYAQGVPLA 338 (808)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~~~glPLa 338 (808)
.. . ....+...+..++|.|+.
T Consensus 179 ~~-----~--~~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 179 SS-----A--EISEILTALRINYGRPLL 199 (325)
T ss_pred hc-----c--ChHHHHHHHHHcCCCHHH
Confidence 41 1 112356678889999963
No 184
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.011 Score=61.43 Aligned_cols=153 Identities=18% Similarity=0.276 Sum_probs=87.5
Q ss_pred cCCccceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH
Q 041551 161 SGFDSHVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL 240 (808)
Q Consensus 161 ~g~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L 240 (808)
.|.++ .+=|.+||++|.|||-||++|+++.... |+..++. ++.++.+.+ . ...++.+.+.-
T Consensus 180 ~GI~P-PKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvgS--------ElVqKYiGE----G-aRlVRelF~lA 240 (406)
T COG1222 180 LGIDP-PKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVGS--------ELVQKYIGE----G-ARLVRELFELA 240 (406)
T ss_pred cCCCC-CCceEeeCCCCCcHHHHHHHHHhccCce-----EEEeccH--------HHHHHHhcc----c-hHHHHHHHHHH
Confidence 46665 5667899999999999999999986554 3432211 222222221 1 12223333222
Q ss_pred -ccceEEEEEecCCCH-------------H---HHHHHHhccCCCC--CCCEEEEEeCchhhhhhc-----CCCeEEEec
Q 041551 241 -ARKMVLLVFDDVNNP-------------R---QIESLIGHLDHLA--SGSRVIITTRDKQVLKNC-----WAGQIYQMK 296 (808)
Q Consensus 241 -~~~~~LlVlDdv~~~-------------~---~~~~l~~~l~~~~--~gs~IiiTTR~~~v~~~~-----~~~~~~~l~ 296 (808)
...+..|.+|.++.. + ..-+|+..+..|. ..-|||..|...+++... ..+..++++
T Consensus 241 rekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfp 320 (406)
T COG1222 241 REKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFP 320 (406)
T ss_pred hhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecC
Confidence 256799999998641 1 1334555555444 356888888777664321 235677887
Q ss_pred CCChhhHHHHHHHHhhcCCC-CCchHHHHHHHHHHHhcCch
Q 041551 297 ELVYTDAQKLFSQYAFRGGH-LDSSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 297 ~L~~~ea~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~glP 336 (808)
.-+.+.-.+.|.-++-+-.- ..-++ +.+++.+.|.-
T Consensus 321 lPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~s 357 (406)
T COG1222 321 LPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFS 357 (406)
T ss_pred CCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCc
Confidence 55555555677666633222 22333 45666666654
No 185
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.98 E-value=0.0014 Score=64.03 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=21.3
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
..+.+.|+|.+|+|||+|.++++.++...
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 36889999999999999999999987776
No 186
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.0021 Score=65.95 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=29.4
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
+..-+.++|.+|+|||.||.++.+++...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3556899999999999999999998874434556655
No 187
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.033 Score=58.93 Aligned_cols=148 Identities=12% Similarity=0.149 Sum_probs=92.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc--------------------ccCceEEEecchhhhhccCHHHHHHHHHhhHhc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR--------------------HFEGSYFAQNVREAEETGGIKDLQKELLSDVLN 226 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~--------------------~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~ 226 (808)
.+.+.++|+.|+||+++|..++..+-- ..+...++.-..+ .....
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~I~-------------- 89 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-GKSIT-------------- 89 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-CCcCC--------------
Confidence 456889999999999999999884321 1122222211000 00000
Q ss_pred CcccccHHHHHHHH-----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCch-hhhhhc-CCCeEEEecC
Q 041551 227 DRILRDVRSQLNRL-----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDK-QVLKNC-WAGQIYQMKE 297 (808)
Q Consensus 227 ~~~~~~~~~l~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~ 297 (808)
.+.++.+.+.+ .+++-.+|+|+++. .+..+.++..+....+++.+|++|.+. .+.... .-...+.+.+
T Consensus 90 ---vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~ 166 (319)
T PRK06090 90 ---VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTP 166 (319)
T ss_pred ---HHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCC
Confidence 12233333333 23456888999985 456788888887767778777766655 444443 2346889999
Q ss_pred CChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHH
Q 041551 298 LVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVL 342 (808)
Q Consensus 298 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 342 (808)
++.+++.+.+.... .. .+..+++.++|.|+....+
T Consensus 167 ~~~~~~~~~L~~~~------~~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 167 PSTAQAMQWLKGQG------IT----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred CCHHHHHHHHHHcC------Cc----hHHHHHHHcCCCHHHHHHH
Confidence 99999999886532 11 1356788999999876544
No 188
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.93 E-value=0.0073 Score=72.38 Aligned_cols=148 Identities=17% Similarity=0.271 Sum_probs=81.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~ 245 (808)
.+-|.++|++|.|||+||+++++.....| +.+.. .++ +....++. ...++.+.+.. ...+.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~~----------~~l----~~~~vGes-e~~i~~~f~~A~~~~p~ 548 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANF---IAVRG----------PEI----LSKWVGES-EKAIREIFRKARQAAPA 548 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEeh----------HHH----hhcccCcH-HHHHHHHHHHHHhcCCE
Confidence 34588999999999999999999765433 11110 011 11111111 11222222222 35678
Q ss_pred EEEEecCCCH--------------HHHHHHHhccCCC--CCCCEEEEEeCchhhhhh-c----CCCeEEEecCCChhhHH
Q 041551 246 LLVFDDVNNP--------------RQIESLIGHLDHL--ASGSRVIITTRDKQVLKN-C----WAGQIYQMKELVYTDAQ 304 (808)
Q Consensus 246 LlVlDdv~~~--------------~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~ 304 (808)
+|++|+++.. ..+..++..+... ..+-.||.||...+.... . ..+..+.++..+.++-.
T Consensus 549 iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~ 628 (733)
T TIGR01243 549 IIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARK 628 (733)
T ss_pred EEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHH
Confidence 9999998632 1234454444422 234445557765544322 1 23567889999999999
Q ss_pred HHHHHHhhcCCCC-CchHHHHHHHHHHHhcCch
Q 041551 305 KLFSQYAFRGGHL-DSSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 305 ~Lf~~~~~~~~~~-~~~~~~~~~~i~~~~~glP 336 (808)
++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 629 ~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 629 EIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred HHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 9987665322111 112 345666666643
No 189
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.93 E-value=0.015 Score=59.25 Aligned_cols=161 Identities=17% Similarity=0.236 Sum_probs=94.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh--cccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH---c
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS--RHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL---A 241 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~--~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L---~ 241 (808)
.++...+|++|.|||+-|..+++++- +-|++++.=.+ ++...+..-+..++ .....+.... .
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln---aSderGisvvr~Ki----------k~fakl~~~~~~~~ 123 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN---ASDERGISVVREKI----------KNFAKLTVLLKRSD 123 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc---ccccccccchhhhh----------cCHHHHhhcccccc
Confidence 56788999999999999999998653 34555544222 12222222111111 1111111111 0
Q ss_pred ---cce-EEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEecCCChhhHHHHHHHHhhc
Q 041551 242 ---RKM-VLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMKELVYTDAQKLFSQYAFR 313 (808)
Q Consensus 242 ---~~~-~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~ 313 (808)
.++ -.+|||+++. .+.|..+..........++.|..+.... +.... ..-.-|.-++|.+++..+-+...+-.
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~ 203 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASK 203 (346)
T ss_pred CCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHH
Confidence 122 5789999986 4668899888877666666554443332 21111 11246788999999999998888843
Q ss_pred CCCCCchHHHHHHHHHHHhcCc-hhhHHHH
Q 041551 314 GGHLDSSYTELTDKAIKYAQGV-PLALKVL 342 (808)
Q Consensus 314 ~~~~~~~~~~~~~~i~~~~~gl-PLal~~~ 342 (808)
.+ .+-..+..+.|++.++|- --|+..+
T Consensus 204 E~--v~~d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 204 EG--VDIDDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hC--CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 22 333456678899999884 4444433
No 190
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.92 E-value=0.0025 Score=65.27 Aligned_cols=94 Identities=21% Similarity=0.162 Sum_probs=58.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhc--------Cccc--------
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLN--------DRIL-------- 230 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~--------~~~~-------- 230 (808)
-.-++|.|-.|.||||||+.++++++.+|+..+++..+.+- .....++.+.+...-.. ..+.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer--~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER--TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34589999999999999999999998888877777654332 23344455554432110 0011
Q ss_pred -ccHHHHHHHH--c-cceEEEEEecCCCHHH-HHHHH
Q 041551 231 -RDVRSQLNRL--A-RKMVLLVFDDVNNPRQ-IESLI 262 (808)
Q Consensus 231 -~~~~~l~~~L--~-~~~~LlVlDdv~~~~~-~~~l~ 262 (808)
...-.+-+++ + ++.+|+++||+-...+ ..++.
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~reis 183 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVS 183 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHHHH
Confidence 1111233444 3 8899999999865433 44443
No 191
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.91 E-value=0.0036 Score=66.64 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=29.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.-+.++|..|+|||.||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56899999999999999999998766555667766
No 192
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.017 Score=61.81 Aligned_cols=148 Identities=13% Similarity=0.117 Sum_probs=92.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc---------------------ccCceEEEecchhhhhccCHHHHHHHHHhhHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR---------------------HFEGSYFAQNVREAEETGGIKDLQKELLSDVL 225 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~---------------------~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 225 (808)
.+.+.++|+.|+||+++|.+++..+-- ..+...++.-... ....
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~I-------------- 88 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSSL-------------- 88 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cccC--------------
Confidence 456789999999999999999985421 1112222210000 0000
Q ss_pred cCcccccHHHHHHHH-----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEec
Q 041551 226 NDRILRDVRSQLNRL-----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMK 296 (808)
Q Consensus 226 ~~~~~~~~~~l~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~ 296 (808)
..+.++.+.+.+ .+++-.+|+|+++. .+..+.++..+.....++.+|.+|.+.+ +.... .-...+.+.
T Consensus 89 ---~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~ 165 (334)
T PRK07993 89 ---GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLA 165 (334)
T ss_pred ---CHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCC
Confidence 013344444443 25667899999885 4567888888877677787777776643 44442 223578999
Q ss_pred CCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhH
Q 041551 297 ELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLAL 339 (808)
Q Consensus 297 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal 339 (808)
+++.+++.+.+.... . ...+.+..++..++|.|...
T Consensus 166 ~~~~~~~~~~L~~~~------~-~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 166 PPPEQYALTWLSREV------T-MSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred CCCHHHHHHHHHHcc------C-CCHHHHHHHHHHcCCCHHHH
Confidence 999999998876532 1 11233678899999999643
No 193
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.024 Score=60.82 Aligned_cols=123 Identities=13% Similarity=0.155 Sum_probs=75.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc---------------------cCceEEEecchhhhhccCHHHHHHHHHhhHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH---------------------FEGSYFAQNVREAEETGGIKDLQKELLSDVL 225 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~---------------------F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 225 (808)
.+...++|+.|+||||+|+.+++.+-.. ++...++... .....
T Consensus 28 ~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~---~~~i~------------- 91 (329)
T PRK08058 28 SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD---GQSIK------------- 91 (329)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc---cccCC-------------
Confidence 4567899999999999999998864221 1122222100 00000
Q ss_pred cCcccccHHHHHHHH-----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEec
Q 041551 226 NDRILRDVRSQLNRL-----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMK 296 (808)
Q Consensus 226 ~~~~~~~~~~l~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~ 296 (808)
.+.++.+.+.+ .+.+-++|+|+++. .+..+.++..+.....++.+|++|.+.. +.... .....+++.
T Consensus 92 ----id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~ 167 (329)
T PRK08058 92 ----KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFR 167 (329)
T ss_pred ----HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCC
Confidence 02222233222 24556789999875 4457778877776677787777776543 33322 234788999
Q ss_pred CCChhhHHHHHHH
Q 041551 297 ELVYTDAQKLFSQ 309 (808)
Q Consensus 297 ~L~~~ea~~Lf~~ 309 (808)
+++.++..+.+..
T Consensus 168 ~~~~~~~~~~L~~ 180 (329)
T PRK08058 168 PLPPESLIQRLQE 180 (329)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999887764
No 194
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.84 E-value=0.038 Score=63.59 Aligned_cols=161 Identities=14% Similarity=0.135 Sum_probs=88.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhh-------HhcC--cccccHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSD-------VLND--RILRDVRSQL 237 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~-------~~~~--~~~~~~~~l~ 237 (808)
.+.+.++|..|+||||+|+.+++.+-..-... ...-+.-...+.+... +... ...+.++.++
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~---------~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~ 108 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD---------GEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIR 108 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------CCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHH
Confidence 45677899999999999999998643110000 0000000000000000 0000 0012233333
Q ss_pred HHH-----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEe-Cchhhhhhc-CCCeEEEecCCChhhHHHHHH
Q 041551 238 NRL-----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITT-RDKQVLKNC-WAGQIYQMKELVYTDAQKLFS 308 (808)
Q Consensus 238 ~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~ 308 (808)
+.. .+++-++|+|+++. ....+.|+..+........+|++| ....+.... .....++..+++.++..+.+.
T Consensus 109 ~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~ 188 (559)
T PRK05563 109 DKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLK 188 (559)
T ss_pred HHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHH
Confidence 332 34567889999985 456777877766544455555544 433333221 223578899999999988888
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHhcCchhh
Q 041551 309 QYAFRGGHLDSSYTELTDKAIKYAQGVPLA 338 (808)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 338 (808)
..+-..+ ..-..+.+..|++.++|-+..
T Consensus 189 ~i~~~eg--i~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 189 YILDKEG--IEYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred HHHHHcC--CCCCHHHHHHHHHHcCCCHHH
Confidence 7763222 122345677888888886643
No 195
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.83 E-value=0.0034 Score=66.30 Aligned_cols=100 Identities=16% Similarity=0.309 Sum_probs=56.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+-+.|+|..|+|||.||.++++.+..+-..+.|+.. ..+...+....... ......+.+. +-=|
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~----------~~l~~~lk~~~~~~----~~~~~l~~l~-~~dl 220 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF----------PEFIRELKNSISDG----SVKEKIDAVK-EAPV 220 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH----------HHHHHHHHHHHhcC----cHHHHHHHhc-CCCE
Confidence 3568899999999999999999987655445566652 12333333222211 1223333333 4568
Q ss_pred EEEecCCC--HHHHH--HHHhcc-CCC-CCCCEEEEEeCch
Q 041551 247 LVFDDVNN--PRQIE--SLIGHL-DHL-ASGSRVIITTRDK 281 (808)
Q Consensus 247 lVlDdv~~--~~~~~--~l~~~l-~~~-~~gs~IiiTTR~~ 281 (808)
|||||+.. ...|. .++..+ ... ..+-.+|+||--.
T Consensus 221 LiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 221 LMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred EEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 99999842 23332 233332 111 2345578888643
No 196
>PRK10536 hypothetical protein; Provisional
Probab=96.83 E-value=0.0044 Score=62.54 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=58.7
Q ss_pred eEEEEeecCCCcHhHHHHHHHHH-h-hcccCceEEEecchhhhh-----ccCHHHHH----HHHH---hhHhcCcccccH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNK-I-SRHFEGSYFAQNVREAEE-----TGGIKDLQ----KELL---SDVLNDRILRDV 233 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~-~-~~~F~~~~~~~~~~~~~~-----~~~~~~l~----~~ll---~~~~~~~~~~~~ 233 (808)
.+|.+.|.+|.|||+||.+++.+ + .+.|+..+...-.-+... +.++.+-. +-+. ..+.+. +.+
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~---~~~ 151 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGA---SFM 151 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhCh---HHH
Confidence 47899999999999999998884 3 445555444321111111 11121111 1111 111111 111
Q ss_pred HHH------------HHHHccce---EEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCch
Q 041551 234 RSQ------------LNRLARKM---VLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDK 281 (808)
Q Consensus 234 ~~l------------~~~L~~~~---~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~ 281 (808)
+.+ ..+++++. -++|+|++.+ +.+...++.. .+.+|++|+|--..
T Consensus 152 ~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v~~GD~~ 213 (262)
T PRK10536 152 QYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTVIVNGDIT 213 (262)
T ss_pred HHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEEEEeCChh
Confidence 111 12455544 4899999985 4455555544 47899999986544
No 197
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.82 E-value=0.0019 Score=64.74 Aligned_cols=34 Identities=24% Similarity=0.461 Sum_probs=29.8
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.++|.|..|.|||||...+.......|+.++.+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 4779999999999999999998999997776665
No 198
>PRK04132 replication factor C small subunit; Provisional
Probab=96.82 E-value=0.042 Score=65.29 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=88.7
Q ss_pred cCCCcHhHHHHHHHHHh-hcccCc-eEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHc-cceEEEEEec
Q 041551 175 IGGIGKTTIADAVFNKI-SRHFEG-SYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLA-RKMVLLVFDD 251 (808)
Q Consensus 175 ~gGiGKTtLA~~~~~~~-~~~F~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~-~~~~LlVlDd 251 (808)
+.++||||+|.++++++ .+.+.. .+-+.+ +...+...+.. +........ .+. .+.-++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNA----Sd~rgid~IR~-iIk~~a~~~----------~~~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNA----SDERGINVIRE-KVKEFARTK----------PIGGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeC----CCcccHHHHHH-HHHHHHhcC----------CcCCCCCEEEEEEC
Confidence 67899999999999976 323322 333432 22233333322 221111000 011 2457999999
Q ss_pred CCCH--HHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCCCchHHHHHHH
Q 041551 252 VNNP--RQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHLDSSYTELTDK 327 (808)
Q Consensus 252 v~~~--~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~ 327 (808)
++.. +..+.|+..+......+++|++|.+.. +.... .....+++.+++.++-.+.+...+-... ..-..+....
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg--i~i~~e~L~~ 716 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG--LELTEEGLQA 716 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC--CCCCHHHHHH
Confidence 9864 467777777665556777777665543 32221 2247899999999999888877663211 1223457788
Q ss_pred HHHHhcCchhhH
Q 041551 328 AIKYAQGVPLAL 339 (808)
Q Consensus 328 i~~~~~glPLal 339 (808)
|++.++|-+...
T Consensus 717 Ia~~s~GDlR~A 728 (846)
T PRK04132 717 ILYIAEGDMRRA 728 (846)
T ss_pred HHHHcCCCHHHH
Confidence 999999977443
No 199
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.80 E-value=0.017 Score=59.93 Aligned_cols=24 Identities=38% Similarity=0.464 Sum_probs=20.6
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
-|.+.|.+|+|||+||+.+++...
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999997553
No 200
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.78 E-value=0.058 Score=53.93 Aligned_cols=96 Identities=18% Similarity=0.319 Sum_probs=55.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH--ccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL--ARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L--~~~~ 244 (808)
..-+.+||..|.|||+|++++.+++..+==..+-+. ...-.. +..+.+.+ ...|
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~----k~~L~~--------------------l~~l~~~l~~~~~k 107 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVS----KEDLGD--------------------LPELLDLLRDRPYK 107 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC----HHHhcc--------------------HHHHHHHHhcCCCC
Confidence 445778999999999999999998765431122221 011112 22333333 2478
Q ss_pred EEEEEecCC---CHHHHHHHHhccCC----CCCCCEEEEEeCchhhhhh
Q 041551 245 VLLVFDDVN---NPRQIESLIGHLDH----LASGSRVIITTRDKQVLKN 286 (808)
Q Consensus 245 ~LlVlDdv~---~~~~~~~l~~~l~~----~~~gs~IiiTTR~~~v~~~ 286 (808)
++|.+||+. +......++..+.. ...+..|..||-.+++...
T Consensus 108 FIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 108 FILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred EEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 999999984 33445666555532 1234445556666665443
No 201
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=96.77 E-value=0.0014 Score=61.78 Aligned_cols=64 Identities=20% Similarity=0.366 Sum_probs=55.0
Q ss_pred cEEecCccccC-CCChHHHHHHHHHhC-CcceEeeC-CcC--CCCcchHHHHHHHHhhcceeEEecccc
Q 041551 26 DVFLSFRGEDT-RDNFTSHLYSALWHN-NIETFIDN-DLK--RGDEISQSLLDTIEASAISIIIFSERY 89 (808)
Q Consensus 26 dvflSy~~~D~-~~~f~~~l~~~l~~~-g~~~~~d~-~l~--~g~~~~~~i~~ai~~s~~~v~v~S~~y 89 (808)
-|||||+.++. -..+|..|+..|++. |+.|.+|. +.. .+..+..++.++++++...|+|+|+.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 49999998553 346799999999999 99999998 664 377899999999999999999999665
No 202
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.75 E-value=0.0045 Score=61.21 Aligned_cols=108 Identities=14% Similarity=0.163 Sum_probs=64.0
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccCceEEE-ecchhhhhccCHHHHHHHHHhh-HhcCcccccHHHHHHHHccceEE
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFEGSYFA-QNVREAEETGGIKDLQKELLSD-VLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~-~~~~~~~~~~~~~~l~~~ll~~-~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
+|.|+|..|.||||++..+...+.......++. .+-.+... ... ..+..+ ..+.......+.++..++..+=.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~-~~~----~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ 77 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVH-ESK----RSLINQREVGLDTLSFENALKAALRQDPDV 77 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccc-cCc----cceeeecccCCCccCHHHHHHHHhcCCcCE
Confidence 589999999999999999888766554444443 22111100 000 001111 00111123345566667777889
Q ss_pred EEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhhh
Q 041551 247 LVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQVL 284 (808)
Q Consensus 247 lVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~ 284 (808)
+++|++.+.+.+....... ..|..++.|+-..++.
T Consensus 78 ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 78 ILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred EEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 9999999988776655442 3466678887766543
No 203
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.75 E-value=0.0098 Score=71.33 Aligned_cols=149 Identities=16% Similarity=0.200 Sum_probs=76.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHH-HHHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQL-NRLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~-~~L~~~~~ 245 (808)
.+-|.++|.+|.|||+||+.+++.....| +.+.. .+ +.... .+.. ...+..+. ....+.+.
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~---i~i~~-~~---------i~~~~----~g~~-~~~l~~lf~~a~~~~p~ 273 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISING-PE---------IMSKY----YGES-EERLREIFKEAEENAPS 273 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeE---EEEec-HH---------Hhccc----ccHH-HHHHHHHHHHHHhcCCc
Confidence 45688999999999999999998765433 22221 00 00000 0000 01112122 22245668
Q ss_pred EEEEecCCCH-------------HHHHHHHhccCCC-CCCCEEEE-EeCchh-hhhhc----CCCeEEEecCCChhhHHH
Q 041551 246 LLVFDDVNNP-------------RQIESLIGHLDHL-ASGSRVII-TTRDKQ-VLKNC----WAGQIYQMKELVYTDAQK 305 (808)
Q Consensus 246 LlVlDdv~~~-------------~~~~~l~~~l~~~-~~gs~Iii-TTR~~~-v~~~~----~~~~~~~l~~L~~~ea~~ 305 (808)
+|+||+++.. .....+...+... ..+..++| ||...+ +-... .....+.++..+.++-.+
T Consensus 274 il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~ 353 (733)
T TIGR01243 274 IIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKE 353 (733)
T ss_pred EEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHH
Confidence 9999998542 1233444433322 22334444 444332 11111 124567788888888888
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCch
Q 041551 306 LFSQYAFRGGHLDSSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 306 Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glP 336 (808)
++....-.. ... .......+++.+.|..
T Consensus 354 Il~~~~~~~-~l~--~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 354 ILKVHTRNM-PLA--EDVDLDKLAEVTHGFV 381 (733)
T ss_pred HHHHHhcCC-CCc--cccCHHHHHHhCCCCC
Confidence 887554211 111 1122456777777754
No 204
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.021 Score=64.32 Aligned_cols=160 Identities=17% Similarity=0.181 Sum_probs=83.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc-cCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~ 245 (808)
..-|.|.|..|+|||+||+++++.+... .-.+.++++. ......+.++++.+- ..+.+.+...+-
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs--~l~~~~~e~iQk~l~------------~vfse~~~~~PS 496 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCS--TLDGSSLEKIQKFLN------------NVFSEALWYAPS 496 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEech--hccchhHHHHHHHHH------------HHHHHHHhhCCc
Confidence 3458899999999999999999976642 2223333321 112223444444331 223344567889
Q ss_pred EEEEecCCCHH--------H-------HHHHH-hccC-CCCCCCE--EEEEeCchhhhhh-----cCCCeEEEecCCChh
Q 041551 246 LLVFDDVNNPR--------Q-------IESLI-GHLD-HLASGSR--VIITTRDKQVLKN-----CWAGQIYQMKELVYT 301 (808)
Q Consensus 246 LlVlDdv~~~~--------~-------~~~l~-~~l~-~~~~gs~--IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ 301 (808)
++||||++-.. + +..++ .... ....+.+ +|.|.....-... .-......++.+..+
T Consensus 497 iIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~ 576 (952)
T KOG0735|consen 497 IIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVT 576 (952)
T ss_pred EEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchh
Confidence 99999985311 0 11111 1111 1123444 3444443322211 123356688899888
Q ss_pred hHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCc-hhhHHHH
Q 041551 302 DAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGV-PLALKVL 342 (808)
Q Consensus 302 ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~ 342 (808)
+-.++++...-+ .. .....+...-+..+|+|. |.-+.++
T Consensus 577 ~R~~IL~~~~s~-~~-~~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 577 RRKEILTTIFSK-NL-SDITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred HHHHHHHHHHHh-hh-hhhhhHHHHHHHHhcCCccchhHHHH
Confidence 888887765522 11 122223333377777763 5544443
No 205
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.74 E-value=0.0081 Score=57.11 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=27.7
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
++.|+|.+|.||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987765555666765
No 206
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.72 E-value=0.0098 Score=55.83 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=61.9
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHh----c-------Cccc-------
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVL----N-------DRIL------- 230 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~----~-------~~~~------- 230 (808)
.|-|++-.|.||||+|...+-+...+=..+.++.-++.. ...+-..+++.+- .+. + .+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~a~ 81 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAAAA 81 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHHHH
Confidence 567888889999999999888765554445554433321 1223333333320 000 0 0000
Q ss_pred ccHHHHHHHHc-cceEEEEEecCCCH-----HHHHHHHhccCCCCCCCEEEEEeCchh
Q 041551 231 RDVRSQLNRLA-RKMVLLVFDDVNNP-----RQIESLIGHLDHLASGSRVIITTRDKQ 282 (808)
Q Consensus 231 ~~~~~l~~~L~-~~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~IiiTTR~~~ 282 (808)
+..+..++.+. +.-=|+|||++... -..+.+...+.....+..||+|.|+..
T Consensus 82 ~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 82 EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 22333444444 35579999998542 123334443444456778999999875
No 207
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.11 Score=55.64 Aligned_cols=89 Identities=15% Similarity=0.198 Sum_probs=60.9
Q ss_pred cceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCc-hhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRD-KQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+++-++|+|+++. .+..+.++..+....+++.+|.+|.+ ..+.... .-...+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~-----~ 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG-----V 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC-----C
Confidence 3456888999974 56688888888777778876666655 4444442 223688999999999999887642 1
Q ss_pred CchHHHHHHHHHHHhcCchhhHH
Q 041551 318 DSSYTELTDKAIKYAQGVPLALK 340 (808)
Q Consensus 318 ~~~~~~~~~~i~~~~~glPLal~ 340 (808)
.+ ...++..++|.|....
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAAL 223 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHH
Confidence 11 1235778899996443
No 208
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.70 E-value=0.0015 Score=59.01 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.4
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 209
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.69 E-value=0.011 Score=58.07 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=27.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.++|.++|+.|+||||.+.+++.+.+.+-..+..++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 368999999999999999998887666534455554
No 210
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.66 E-value=0.00027 Score=74.12 Aligned_cols=198 Identities=18% Similarity=0.299 Sum_probs=102.4
Q ss_pred CCceeEEEecCCC------CCCcccCcccceEeecCCCCcccc---cchhhcccccceeccCCCCCCCCCCC---CCCCC
Q 041551 489 FAEVRHLEWARCP------LKTLNICAEKLVSLKMPRSKVQQL---WDDVQDLVNLKEIDLSRSESLTKLPD---LSRAK 556 (808)
Q Consensus 489 ~~~Lr~L~l~~~~------l~~l~~~~~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~L~~n~~~~~~p~---~~~l~ 556 (808)
.++|.+|+++.|+ ++.+....+.++.+.+.+|.-..+ -..-..+.-+..+++.+|..++...- -..+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 3455666655554 222233444455555554321111 11112334455556666654443321 23456
Q ss_pred CCcEEecCCCCCCcccc--ccccCCCCcCEEecCCCCCCCcCCCcC---CCCCCCEEeccCCCCCCcc--cc--cccccc
Q 041551 557 NLEILWLRGCLSLVETH--STIQYLNKLEDLDLDYCISLTSLPTSI---HSKHLKELSLRGCSNLKIF--PE--ITSCHM 627 (808)
Q Consensus 557 ~L~~L~L~~n~~l~~~p--~~~~~l~~L~~L~l~~~~~l~~lp~~~---~l~~L~~L~L~~~~~l~~~--p~--~~~~~L 627 (808)
.|+.|+.++|+..+..+ .-..+..+|++|-+++|..++...... +.+.|+.+++.+|.....- -. .....|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 67777777776544322 123456677777777776655543322 5567777777766433221 11 111126
Q ss_pred cEEEecccCCe------ecCcccccCCcCcEEEeecCCCccc-ccccccCCCCCCEEEeecCCCCc
Q 041551 628 WRLELTKVGIK------ELPSSIECLSNLQYLYIWDCSELES-ISSSIFKLNSLESIDISNCSNLK 686 (808)
Q Consensus 628 ~~L~L~~n~i~------~lp~~~~~l~~L~~L~L~~n~~l~~-lp~~~~~l~~L~~L~l~~c~~l~ 686 (808)
++|.|+.+... .+..+-..+..|..|.|++|+.+.. .-..+..+++|+.+++.+|....
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 66666655321 2233345567788888888876542 22335567778888777776554
No 211
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.66 E-value=0.022 Score=68.13 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=69.8
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhccc------CceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLA 241 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~ 241 (808)
.-+.++|.+|+|||++|+.+++++...- ...+|..+.. .+.... . ...+..+.+..+.+.++
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~---------~l~a~~--~-~~g~~e~~l~~i~~~~~ 271 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG---------SLLAGT--K-YRGDFEERLKAVVSEIE 271 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH---------HHhhhc--c-ccchHHHHHHHHHHHHh
Confidence 3467999999999999999999764321 2334433211 111000 0 00011123333344332
Q ss_pred -cceEEEEEecCCCH-----------HHHHHHHhccCCCCCCCEEEEEeCchhhhhh------c-CCCeEEEecCCChhh
Q 041551 242 -RKMVLLVFDDVNNP-----------RQIESLIGHLDHLASGSRVIITTRDKQVLKN------C-WAGQIYQMKELVYTD 302 (808)
Q Consensus 242 -~~~~LlVlDdv~~~-----------~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~------~-~~~~~~~l~~L~~~e 302 (808)
.++.+|++|+++.. +.-+.+.+.+.. + .-++|-+|...+.... . .-...++++.++.++
T Consensus 272 ~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~ 349 (731)
T TIGR02639 272 KEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEE 349 (731)
T ss_pred ccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHH
Confidence 45789999998632 122334444331 1 2234444443221110 0 123578999999999
Q ss_pred HHHHHHHHh
Q 041551 303 AQKLFSQYA 311 (808)
Q Consensus 303 a~~Lf~~~~ 311 (808)
..+++....
T Consensus 350 ~~~il~~~~ 358 (731)
T TIGR02639 350 TVKILKGLK 358 (731)
T ss_pred HHHHHHHHH
Confidence 999998654
No 212
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.62 E-value=0.0088 Score=58.69 Aligned_cols=109 Identities=17% Similarity=0.297 Sum_probs=54.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH--hhcccCceEEEecchhhhhcc-----CHHH-------HHHHHHhhHhcCccccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK--ISRHFEGSYFAQNVREAEETG-----GIKD-------LQKELLSDVLNDRILRD 232 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~--~~~~F~~~~~~~~~~~~~~~~-----~~~~-------l~~~ll~~~~~~~~~~~ 232 (808)
..++.+.|++|.|||.||.+.+.+ ...+|+..+++....+....- ++.+ -..+.+..+.+. ..
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~---~~ 95 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGK---EK 95 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-T---TC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhCh---Hh
Confidence 568999999999999999988864 246788888876443221111 1111 011111111111 22
Q ss_pred HHHHHH----------HHcc---ceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCch
Q 041551 233 VRSQLN----------RLAR---KMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDK 281 (808)
Q Consensus 233 ~~~l~~----------~L~~---~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~ 281 (808)
++.+.+ .+++ ...++|+|++.+ +.++..++.. .+.|||||++--..
T Consensus 96 ~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~ 156 (205)
T PF02562_consen 96 LEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPS 156 (205)
T ss_dssp HHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE---
T ss_pred HHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCce
Confidence 333222 2333 347899999975 4567777654 47899999987544
No 213
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.52 E-value=0.0012 Score=65.48 Aligned_cols=183 Identities=16% Similarity=0.191 Sum_probs=96.7
Q ss_pred CCceeEEEecCCCCCCc--------ccCcccceEeecCCCCcc----ccc-------chhhcccccceeccCCCCCCCCC
Q 041551 489 FAEVRHLEWARCPLKTL--------NICAEKLVSLKMPRSKVQ----QLW-------DDVQDLVNLKEIDLSRSESLTKL 549 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--------~~~~~~L~~L~L~~n~l~----~l~-------~~~~~l~~L~~L~L~~n~~~~~~ 549 (808)
+..+..++++||.+.+- ...-++|+..+++.-... +++ +.+-+|++|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 45677788888875432 334566666666543221 222 23456777888888887766655
Q ss_pred CC-----CCCCCCCcEEecCCCCCCcccccc-ccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccc
Q 041551 550 PD-----LSRAKNLEILWLRGCLSLVETHST-IQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEIT 623 (808)
Q Consensus 550 p~-----~~~l~~L~~L~L~~n~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~ 623 (808)
|. +++-+.|++|.|++| .++.+... ++ +.|.+ |..|++.. .-|.|++.....| .+...|...
T Consensus 109 ~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rig--kal~~--la~nKKaa------~kp~Le~vicgrN-Rlengs~~~ 176 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIG--KALFH--LAYNKKAA------DKPKLEVVICGRN-RLENGSKEL 176 (388)
T ss_pred chHHHHHHhcCCCceeEEeecC-CCCccchhHHH--HHHHH--HHHHhhhc------cCCCceEEEeccc-hhccCcHHH
Confidence 52 566777777777776 33322211 11 00000 01111111 1234555555444 222222110
Q ss_pred -------cccccEEEecccCCee-----c-CcccccCCcCcEEEeecCCCccc----ccccccCCCCCCEEEeecCC
Q 041551 624 -------SCHMWRLELTKVGIKE-----L-PSSIECLSNLQYLYIWDCSELES----ISSSIFKLNSLESIDISNCS 683 (808)
Q Consensus 624 -------~~~L~~L~L~~n~i~~-----l-p~~~~~l~~L~~L~L~~n~~l~~----lp~~~~~l~~L~~L~l~~c~ 683 (808)
...|+.+.+..|.|.. + --.+..+.+|+.|+|..|.+... +-..++..+.|+.|.+..|-
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 1126667777777651 1 11345678888888888876321 22234455668888888873
No 214
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.51 E-value=0.022 Score=66.85 Aligned_cols=127 Identities=15% Similarity=0.203 Sum_probs=70.2
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHH-HHHHccceEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQ-LNRLARKMVL 246 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l-~~~L~~~~~L 246 (808)
+-|.|+|++|.|||++|+.++.+....| +.+.. + .+.... .+.. ...++.+ ...-...+.+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is~----~------~~~~~~----~g~~-~~~~~~~f~~a~~~~P~I 247 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISG----S------DFVEMF----VGVG-ASRVRDMFEQAKKAAPCI 247 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEeh----H------HhHHhh----hccc-HHHHHHHHHHHHhcCCcE
Confidence 3488999999999999999998765433 12221 0 011000 0000 0111111 1122346789
Q ss_pred EEEecCCCH----------------HHHHHHHhccCCCC--CCCEEEEEeCchhhhhhc-----CCCeEEEecCCChhhH
Q 041551 247 LVFDDVNNP----------------RQIESLIGHLDHLA--SGSRVIITTRDKQVLKNC-----WAGQIYQMKELVYTDA 303 (808)
Q Consensus 247 lVlDdv~~~----------------~~~~~l~~~l~~~~--~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea 303 (808)
|++|+++.. ..+..++..+..+. .+.-+|.||...+..... ..+..+.++..+.++-
T Consensus 248 ifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R 327 (644)
T PRK10733 248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 327 (644)
T ss_pred EEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHH
Confidence 999998653 12344443333222 334455577666543221 2346778888888888
Q ss_pred HHHHHHHhh
Q 041551 304 QKLFSQYAF 312 (808)
Q Consensus 304 ~~Lf~~~~~ 312 (808)
.+++..+..
T Consensus 328 ~~Il~~~~~ 336 (644)
T PRK10733 328 EQILKVHMR 336 (644)
T ss_pred HHHHHHHhh
Confidence 888887763
No 215
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.49 E-value=0.0037 Score=57.94 Aligned_cols=84 Identities=29% Similarity=0.291 Sum_probs=44.9
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCc--ccccHHHHHHHHccceEEE
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDR--ILRDVRSQLNRLARKMVLL 247 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~--~~~~~~~l~~~L~~~~~Ll 247 (808)
|.|+|.+|+|||+||+.+++.+.. .++.... +......++....--.-.... +......+ .+..++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~----~~~~i~~---~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-----~~~~il 69 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR----PVIRINC---SSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-----RKGGIL 69 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC----EEEEEE----TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-----HEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc----ceEEEEe---ccccccccceeeeeecccccccccccccccc-----cceeEE
Confidence 679999999999999999997732 2332222 222333333321111100000 00111111 178999
Q ss_pred EEecCC--CHHHHHHHHhcc
Q 041551 248 VFDDVN--NPRQIESLIGHL 265 (808)
Q Consensus 248 VlDdv~--~~~~~~~l~~~l 265 (808)
|||+++ +++.++.+...+
T Consensus 70 ~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 70 VLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EESSCGG--HHHHHTTHHHH
T ss_pred EECCcccCCHHHHHHHHHHH
Confidence 999998 455555555554
No 216
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.00027 Score=70.14 Aligned_cols=95 Identities=25% Similarity=0.342 Sum_probs=69.9
Q ss_pred CceeEEEecCCCCCCc--ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC---CCCCCCCcEEecC
Q 041551 490 AEVRHLEWARCPLKTL--NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD---LSRAKNLEILWLR 564 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~---~~~l~~L~~L~L~ 564 (808)
.+++.|+..||.+..+ ...+..|++|.|+-|.|+.+ ..+..|++|+.|+|..|.+ ..+.. +.++++|+.|.|.
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhhHhhc
Confidence 4567788888888887 55678899999999999888 4578889999999998853 33332 6788888888888
Q ss_pred CCCCCccccc-----cccCCCCcCEEe
Q 041551 565 GCLSLVETHS-----TIQYLNKLEDLD 586 (808)
Q Consensus 565 ~n~~l~~~p~-----~~~~l~~L~~L~ 586 (808)
.|...+.-+. .+.-|++|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 8765554432 244566776665
No 217
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.03 Score=59.74 Aligned_cols=86 Identities=12% Similarity=0.201 Sum_probs=50.9
Q ss_pred ceEEEEEecCC--CHHHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCCC
Q 041551 243 KMVLLVFDDVN--NPRQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHLD 318 (808)
Q Consensus 243 ~~~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 318 (808)
++-.+|+|+++ +.+..+.++..+.....++.+|++|.+.. +.... .....+.+.+++.+++.+.+.... ..
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~ 187 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VA 187 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CC
Confidence 33344568776 34555566555544445676777777654 33322 223678899999999998886532 11
Q ss_pred chHHHHHHHHHHHhcCchhh
Q 041551 319 SSYTELTDKAIKYAQGVPLA 338 (808)
Q Consensus 319 ~~~~~~~~~i~~~~~glPLa 338 (808)
.. . ..+..++|-|+.
T Consensus 188 ~~-~----~~l~~~~g~p~~ 202 (325)
T PRK08699 188 EP-E----ERLAFHSGAPLF 202 (325)
T ss_pred cH-H----HHHHHhCCChhh
Confidence 11 1 123568898854
No 218
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.028 Score=63.08 Aligned_cols=129 Identities=19% Similarity=0.292 Sum_probs=73.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHH-HccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNR-LARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~-L~~~~~ 245 (808)
.+=|..+|+||.|||++|+++++.-...|-.+ . ..++++...++.+ ..+..+.+. =+--+.
T Consensus 468 pkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---k--------------gpEL~sk~vGeSE-r~ir~iF~kAR~~aP~ 529 (693)
T KOG0730|consen 468 PKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---K--------------GPELFSKYVGESE-RAIREVFRKARQVAPC 529 (693)
T ss_pred CceEEEECCCCcchHHHHHHHhhhhcCCeeec---c--------------CHHHHHHhcCchH-HHHHHHHHHHhhcCCe
Confidence 66788999999999999999999766555322 0 0011122222111 112222211 123568
Q ss_pred EEEEecCCCHH-------------HHHHHHhccCCCCCCCEEEE---EeCchhhhhhc-C---CCeEEEecCCChhhHHH
Q 041551 246 LLVFDDVNNPR-------------QIESLIGHLDHLASGSRVII---TTRDKQVLKNC-W---AGQIYQMKELVYTDAQK 305 (808)
Q Consensus 246 LlVlDdv~~~~-------------~~~~l~~~l~~~~~gs~Iii---TTR~~~v~~~~-~---~~~~~~l~~L~~~ea~~ 305 (808)
++.||.++... .+..++..++.......|+| |-|...+-..+ . .+.++-++.-+.+.-.+
T Consensus 530 IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~ 609 (693)
T KOG0730|consen 530 IIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLE 609 (693)
T ss_pred EEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHH
Confidence 89999886421 25566666654444444444 33433332222 2 35677787777777888
Q ss_pred HHHHHhhc
Q 041551 306 LFSQYAFR 313 (808)
Q Consensus 306 Lf~~~~~~ 313 (808)
+|+.++-+
T Consensus 610 Ilk~~~kk 617 (693)
T KOG0730|consen 610 ILKQCAKK 617 (693)
T ss_pred HHHHHHhc
Confidence 99998843
No 219
>PHA00729 NTP-binding motif containing protein
Probab=96.45 E-value=0.0078 Score=59.77 Aligned_cols=25 Identities=40% Similarity=0.429 Sum_probs=22.2
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..|.|+|.+|+||||||..+++++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998754
No 220
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.45 E-value=0.012 Score=54.77 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999987543
No 221
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.014 Score=67.86 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=59.7
Q ss_pred ccceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccc
Q 041551 164 DSHVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARK 243 (808)
Q Consensus 164 ~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~ 243 (808)
..++.+....|+.|+|||.||++++..+-+.=+..+-+ ++++......+ ..+...-.+.-..+.-..+-+..+++
T Consensus 518 ~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~EkHsV----SrLIGaPPGYVGyeeGG~LTEaVRr~ 592 (786)
T COG0542 518 NRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEKHSV----SRLIGAPPGYVGYEEGGQLTEAVRRK 592 (786)
T ss_pred CCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHHHHH----HHHhCCCCCCceeccccchhHhhhcC
Confidence 33467788899999999999999998653321222222 23333222222 22222222211113345566667778
Q ss_pred eE-EEEEecCC--CHHHHHHHHhccCCC
Q 041551 244 MV-LLVFDDVN--NPRQIESLIGHLDHL 268 (808)
Q Consensus 244 ~~-LlVlDdv~--~~~~~~~l~~~l~~~ 268 (808)
+| .+.||+|+ +++..+-|+..+.+.
T Consensus 593 PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 593 PYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred CCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 76 78889997 467788888887653
No 222
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.45 E-value=0.043 Score=66.32 Aligned_cols=154 Identities=15% Similarity=0.125 Sum_probs=78.7
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhccc------CceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLA 241 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~ 241 (808)
.-+.++|.+|+||||+|+.++.++.... ...+|..++.......... . +..+.++.+.+.+.
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~---g---------e~e~~lk~ii~e~~ 276 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVK---G---------EFENRLKSVIDEVK 276 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccc---h---------HHHHHHHHHHHHHH
Confidence 3467999999999999999999875432 1223322221110000000 0 00012222233222
Q ss_pred --cceEEEEEecCCCHH---------HH-HHHHhccCCCCCCCEEEEEeCchhhhhhc-------CCCeEEEecCCChhh
Q 041551 242 --RKMVLLVFDDVNNPR---------QI-ESLIGHLDHLASGSRVIITTRDKQVLKNC-------WAGQIYQMKELVYTD 302 (808)
Q Consensus 242 --~~~~LlVlDdv~~~~---------~~-~~l~~~l~~~~~gs~IiiTTR~~~v~~~~-------~~~~~~~l~~L~~~e 302 (808)
+.+++|++|++.... +. +.+.+.+.. ..-++|-||......... .....+.+++++.++
T Consensus 277 ~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~ 354 (852)
T TIGR03345 277 ASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEET 354 (852)
T ss_pred hcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHH
Confidence 468999999985431 11 124444321 224455555543221111 123689999999999
Q ss_pred HHHHHHHHhhc--CCCCCchHHHHHHHHHHHhcCc
Q 041551 303 AQKLFSQYAFR--GGHLDSSYTELTDKAIKYAQGV 335 (808)
Q Consensus 303 a~~Lf~~~~~~--~~~~~~~~~~~~~~i~~~~~gl 335 (808)
+.+++....-. ......-..+....+++.+.+.
T Consensus 355 ~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 355 AIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 99997544311 1111122344555666666543
No 223
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.42 E-value=0.027 Score=67.37 Aligned_cols=92 Identities=17% Similarity=0.189 Sum_probs=50.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHcc-ceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLAR-KMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~-~~~ 245 (808)
..++.++|+.|+|||+||+.++..+.. ..+.+. ..+......... +.....+....+....+.+.++. ..-
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~~d-~se~~~~~~~~~----lig~~~gyvg~~~~~~l~~~~~~~p~~ 555 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEALGV---HLERFD-MSEYMEKHTVSR----LIGAPPGYVGFEQGGLLTEAVRKHPHC 555 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHhcC---CeEEEe-CchhhhcccHHH----HhcCCCCCcccchhhHHHHHHHhCCCe
Confidence 456889999999999999999987632 223332 222222222221 11111111111222334444443 446
Q ss_pred EEEEecCCC--HHHHHHHHhccC
Q 041551 246 LLVFDDVNN--PRQIESLIGHLD 266 (808)
Q Consensus 246 LlVlDdv~~--~~~~~~l~~~l~ 266 (808)
+++||+++. ++.++.|+..+.
T Consensus 556 VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 556 VLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred EEEEechhhcCHHHHHHHHHhhc
Confidence 999999984 555666666654
No 224
>PRK04296 thymidine kinase; Provisional
Probab=96.40 E-value=0.0054 Score=60.21 Aligned_cols=111 Identities=14% Similarity=0.028 Sum_probs=60.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhc---CcccccHHHHHHHHccce
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLN---DRILRDVRSQLNRLARKM 244 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~---~~~~~~~~~l~~~L~~~~ 244 (808)
.++.|+|..|.||||+|..++.+...+-..++++... .....+...+...+-..+.. ....+....+.+ ..++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--ccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCC
Confidence 4678999999999999999999876655444544210 01111111222211100000 000122222222 22355
Q ss_pred EEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchhh
Q 041551 245 VLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQV 283 (808)
Q Consensus 245 ~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~v 283 (808)
-+||+|.+.- .+++.++...+. ..|..||+|.++.+.
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTDF 118 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCccc
Confidence 6899999864 344555544432 467889999998653
No 225
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.39 E-value=0.0036 Score=57.48 Aligned_cols=37 Identities=30% Similarity=0.552 Sum_probs=28.6
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcc-cCce-EEEecch
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRH-FEGS-YFAQNVR 205 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~-F~~~-~~~~~~~ 205 (808)
-|+|.|++|+||||+++.+++.++.. |... +|...++
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 48899999999999999999987766 6654 4444333
No 226
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.39 E-value=0.011 Score=63.09 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=52.9
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCce-EEEecchhhhhccCHHHHHHHHHhhHhcCc----cc------ccHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGS-YFAQNVREAEETGGIKDLQKELLSDVLNDR----IL------RDVRSQ 236 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~-~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~----~~------~~~~~l 236 (808)
.-++|+|.+|.|||||++.+++.+..+.+.+ +++..+. .......++.+.+...+.... .. .....+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIg--ER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~ 211 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLID--ERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER 211 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEec--CCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999876655333 2332222 233455666666655443211 11 112222
Q ss_pred HHHH--ccceEEEEEecCCCH
Q 041551 237 LNRL--ARKMVLLVFDDVNNP 255 (808)
Q Consensus 237 ~~~L--~~~~~LlVlDdv~~~ 255 (808)
.+++ .+++++||+|++...
T Consensus 212 Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 212 AKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHcCCCEEEEEeCcHHH
Confidence 3333 579999999998654
No 227
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.39 E-value=0.0049 Score=67.30 Aligned_cols=86 Identities=15% Similarity=0.135 Sum_probs=47.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc--ccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccc-cH-HHHHHHH--
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR--HFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILR-DV-RSQLNRL-- 240 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~--~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~-~~-~~l~~~L-- 240 (808)
.+.|.++|++|+|||++|+++++.... .|..+.|+. +++.....++.......-.+..... .+ +.+....
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~ 269 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ 269 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc
Confidence 345889999999999999999987643 455556665 2333333333322211100100001 11 1222221
Q ss_pred ccceEEEEEecCCCHH
Q 041551 241 ARKMVLLVFDDVNNPR 256 (808)
Q Consensus 241 ~~~~~LlVlDdv~~~~ 256 (808)
.++++.+|+|+++...
T Consensus 270 p~~~~vliIDEINRan 285 (459)
T PRK11331 270 PEKKYVFIIDEINRAN 285 (459)
T ss_pred ccCCcEEEEehhhccC
Confidence 2467999999998643
No 228
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.37 E-value=0.018 Score=56.93 Aligned_cols=148 Identities=17% Similarity=0.231 Sum_probs=83.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~ 245 (808)
.+-|..+|++|.|||.+|++++++.+--| +-+. ..+++....+. ..+.+..+-++- +.-++
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~---l~vk--------------at~liGehVGd-gar~Ihely~rA~~~aPc 212 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPL---LLVK--------------ATELIGEHVGD-GARRIHELYERARKAAPC 212 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCce---EEec--------------hHHHHHHHhhh-HHHHHHHHHHHHHhcCCe
Confidence 67789999999999999999998654221 1111 11122221111 112233333332 34679
Q ss_pred EEEEecCCC--------------HHHHHHHHhccCCC--CCCCEEEEEeCchhhhhhc---CCCeEEEecCCChhhHHHH
Q 041551 246 LLVFDDVNN--------------PRQIESLIGHLDHL--ASGSRVIITTRDKQVLKNC---WAGQIYQMKELVYTDAQKL 306 (808)
Q Consensus 246 LlVlDdv~~--------------~~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~L 306 (808)
.+.+|.++- .+.+++++..+... +.|-..|-.|.+.+++... .....++..--+++|-.++
T Consensus 213 ivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~i 292 (368)
T COG1223 213 IVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEI 292 (368)
T ss_pred EEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHH
Confidence 999998753 23356666665432 4465566667666554321 2234566666788888888
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHhcCc
Q 041551 307 FSQYAFRGGHLDSSYTELTDKAIKYAQGV 335 (808)
Q Consensus 307 f~~~~~~~~~~~~~~~~~~~~i~~~~~gl 335 (808)
+..++-.-.-+.. ...+.++++.+|+
T Consensus 293 le~y~k~~Plpv~---~~~~~~~~~t~g~ 318 (368)
T COG1223 293 LEYYAKKFPLPVD---ADLRYLAAKTKGM 318 (368)
T ss_pred HHHHHHhCCCccc---cCHHHHHHHhCCC
Confidence 8888732222111 1145566666664
No 229
>PRK07261 topology modulation protein; Provisional
Probab=96.34 E-value=0.014 Score=56.12 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998754
No 230
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.33 E-value=0.0021 Score=63.91 Aligned_cols=61 Identities=31% Similarity=0.361 Sum_probs=27.0
Q ss_pred cccccceeccCCC--CCCCCCCC-CCCCCCCcEEecCCCCCCc-cccccccCCCCcCEEecCCCC
Q 041551 531 DLVNLKEIDLSRS--ESLTKLPD-LSRAKNLEILWLRGCLSLV-ETHSTIQYLNKLEDLDLDYCI 591 (808)
Q Consensus 531 ~l~~L~~L~L~~n--~~~~~~p~-~~~l~~L~~L~L~~n~~l~-~~p~~~~~l~~L~~L~l~~~~ 591 (808)
.|++|++|.++.| .....++- ...+++|++|++++|+.-. .--..+..+.+|..|++.+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 4455555555555 32333332 3334555555555553210 001123344455555555553
No 231
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.32 E-value=0.015 Score=56.45 Aligned_cols=36 Identities=33% Similarity=0.677 Sum_probs=31.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
..+|.+.|+.|.||||+|+.++.++...+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 458999999999999999999999887777777774
No 232
>PRK06762 hypothetical protein; Provisional
Probab=96.31 E-value=0.017 Score=55.33 Aligned_cols=25 Identities=40% Similarity=0.508 Sum_probs=22.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.++|+|+|++|+||||+|+.++.++
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999999876
No 233
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.28 E-value=0.093 Score=54.26 Aligned_cols=168 Identities=14% Similarity=0.142 Sum_probs=95.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCc------eEEEecchhhhhccCHHHHHHHHHhhHhcCccc-----ccHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEG------SYFAQNVREAEETGGIKDLQKELLSDVLNDRIL-----RDVRS 235 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~------~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-----~~~~~ 235 (808)
.+-+.|+|.+|+|||++++++.+.+-..++. ++.+. ....++...+...++..+...-.. +....
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~ 136 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQ 136 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHH
Confidence 4568899999999999999999865444432 33333 345577778888887776543221 22223
Q ss_pred HHHHHcc-ceEEEEEecCCCH-----HHHHHHHhccCCCC---CCCEEEEEeCchhhhhhc-----CCCeEEEecCCChh
Q 041551 236 QLNRLAR-KMVLLVFDDVNNP-----RQIESLIGHLDHLA---SGSRVIITTRDKQVLKNC-----WAGQIYQMKELVYT 301 (808)
Q Consensus 236 l~~~L~~-~~~LlVlDdv~~~-----~~~~~l~~~l~~~~---~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ 301 (808)
..+.++. +--+||+|++.+. .+-.+++..+...+ .=+-|.+-|++---+-.. .-...+.++....+
T Consensus 137 ~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d 216 (302)
T PF05621_consen 137 VLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELD 216 (302)
T ss_pred HHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCC
Confidence 3344443 4468999999762 22233333332222 234456666544222111 12246677776655
Q ss_pred -hHHHHHHHHhhc---CCCCCchHHHHHHHHHHHhcCchhh
Q 041551 302 -DAQKLFSQYAFR---GGHLDSSYTELTDKAIKYAQGVPLA 338 (808)
Q Consensus 302 -ea~~Lf~~~~~~---~~~~~~~~~~~~~~i~~~~~glPLa 338 (808)
|..+|+...... .....-...++++.|...++|+.=-
T Consensus 217 ~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 217 EEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred cHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 455555433211 1112234578899999999997643
No 234
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.28 E-value=0.012 Score=58.83 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=31.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEec
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN 203 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 203 (808)
-.++.|+|.+|.|||++|.+++......-..++|++.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 6789999999999999999999876666677888874
No 235
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.27 E-value=0.022 Score=69.21 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=50.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHcc-ceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLAR-KMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~-~~~ 245 (808)
..++.++|+.|+|||++|+.++......-...+.+. ..+...... ...+.....+.-..+....+.+.++. ...
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d-~s~~~~~~~----~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~ 669 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID-MSEYMEKHS----VARLIGAPPGYVGYEEGGQLTEAVRRKPYS 669 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe-chhhcccch----HHHhcCCCCCccCcccccHHHHHHHcCCCc
Confidence 457889999999999999999986543322333333 222111111 11121111110011112233333433 345
Q ss_pred EEEEecCCC--HHHHHHHHhccC
Q 041551 246 LLVFDDVNN--PRQIESLIGHLD 266 (808)
Q Consensus 246 LlVlDdv~~--~~~~~~l~~~l~ 266 (808)
+|+||+++. ++.+..|+..+.
T Consensus 670 vlllDeieka~~~v~~~Ll~~l~ 692 (852)
T TIGR03346 670 VVLFDEVEKAHPDVFNVLLQVLD 692 (852)
T ss_pred EEEEeccccCCHHHHHHHHHHHh
Confidence 899999984 556777776653
No 236
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.25 E-value=0.026 Score=53.76 Aligned_cols=114 Identities=17% Similarity=0.261 Sum_probs=65.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc--------------------ccCceEEEecchhhhhccCHHHHHHHHHhhHhc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR--------------------HFEGSYFAQNVREAEETGGIKDLQKELLSDVLN 226 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~--------------------~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~ 226 (808)
...+.++|..|+||+++|..+++.+-. ..+...|+..... ......
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~~i~i------------- 84 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK-KKSIKI------------- 84 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-SSSBSH-------------
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-cchhhH-------------
Confidence 445789999999999999999985421 2333334331100 000111
Q ss_pred CcccccHHHHHHHH-----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEecC
Q 041551 227 DRILRDVRSQLNRL-----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMKE 297 (808)
Q Consensus 227 ~~~~~~~~~l~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~ 297 (808)
+.++.+.+.+ .+++-.+|+||++. .+....|+..+.....++++|++|++.. +.... .-...+.+.+
T Consensus 85 ----~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ 160 (162)
T PF13177_consen 85 ----DQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRP 160 (162)
T ss_dssp ----HHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE--
T ss_pred ----HHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCC
Confidence 2223333332 24567899999985 5667888888877778899988888775 33322 2235666665
Q ss_pred C
Q 041551 298 L 298 (808)
Q Consensus 298 L 298 (808)
+
T Consensus 161 l 161 (162)
T PF13177_consen 161 L 161 (162)
T ss_dssp -
T ss_pred C
Confidence 5
No 237
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.24 E-value=0.027 Score=64.96 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.+++.|+|++|.||||+++.++..+.
T Consensus 110 ~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46799999999999999999998643
No 238
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.22 E-value=0.034 Score=54.21 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998865
No 239
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.21 E-value=0.013 Score=59.38 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=31.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEec
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN 203 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 203 (808)
-.++.|+|.+|+|||++|.+++......-..++|++.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~ 59 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDT 59 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 6789999999999999999999876666677888874
No 240
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.20 E-value=0.028 Score=68.13 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=50.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHcc-ceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLAR-KMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~-~~~ 245 (808)
..++.++|+.|+|||+||+.+++.....-...+.+. ..+.... .....+.....+....+....+.+.++. ..-
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~~----~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~ 672 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFMEK----HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYS 672 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhhh----hhHHHHhCCCCcccccchhHHHHHHHHhCCCC
Confidence 357889999999999999999986543323333333 2222111 1112222111110000111223333332 336
Q ss_pred EEEEecCC--CHHHHHHHHhccC
Q 041551 246 LLVFDDVN--NPRQIESLIGHLD 266 (808)
Q Consensus 246 LlVlDdv~--~~~~~~~l~~~l~ 266 (808)
+|+||+++ +++.+..+...+.
T Consensus 673 vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 673 VILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred eEEEeehhhCCHHHHHHHHHHHh
Confidence 99999998 5666777766654
No 241
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.11 Score=58.25 Aligned_cols=159 Identities=19% Similarity=0.277 Sum_probs=90.2
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhcc----cC--ceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH---
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISRH----FE--GSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL--- 240 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~~----F~--~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L--- 240 (808)
-...|+-|+||||+|+.++..+--. .+ ..|..+ .+... ....++.+ -+.......+.++.+++..
T Consensus 41 YlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~-g~~~DviE---iDaASn~gVddiR~i~e~v~y~ 114 (515)
T COG2812 41 YLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINE-GSLIDVIE---IDAASNTGVDDIREIIEKVNYA 114 (515)
T ss_pred hhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--Hhhhc-CCcccchh---hhhhhccChHHHHHHHHHhccC
Confidence 3467999999999999999853211 11 011111 00000 00000000 0000001114455555554
Q ss_pred --ccceEEEEEecCC--CHHHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEecCCChhhHHHHHHHHhhcC
Q 041551 241 --ARKMVLLVFDDVN--NPRQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRG 314 (808)
Q Consensus 241 --~~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 314 (808)
.++.-..|+|.|. +...++.++.-+......-+.|..|.+.+ +.... .....|..+.++.++-...+...+-
T Consensus 115 P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~-- 192 (515)
T COG2812 115 PSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILD-- 192 (515)
T ss_pred CccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHH--
Confidence 3466688999997 45678999888876566666666665553 32221 2347899999999999888888772
Q ss_pred CCCCchHHHHHHHHHHHhcCch
Q 041551 315 GHLDSSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 315 ~~~~~~~~~~~~~i~~~~~glP 336 (808)
.......++....|++..+|..
T Consensus 193 ~E~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 193 KEGINIEEDALSLIARAAEGSL 214 (515)
T ss_pred hcCCccCHHHHHHHHHHcCCCh
Confidence 2333444555666777777643
No 242
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.18 E-value=0.014 Score=55.86 Aligned_cols=120 Identities=12% Similarity=0.138 Sum_probs=63.3
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCc--cc--ccHHHHHHHHcc--c
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDR--IL--RDVRSQLNRLAR--K 243 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~--~~--~~~~~l~~~L~~--~ 243 (808)
+.|.|.+|.|||++|.+++.. .....+++... ...+. ++++.+........ .. +....+.+.+.+ +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~----~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA----EAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDP 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc----CcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCC
Confidence 678999999999999999865 23456666522 22222 23333322211111 11 444455555532 2
Q ss_pred eEEEEEecCC--------C---------HHHHHHHHhccCCCCCCCEEEEEeCchhhhhhcCCCeEEEecCCChhhHHHH
Q 041551 244 MVLLVFDDVN--------N---------PRQIESLIGHLDHLASGSRVIITTRDKQVLKNCWAGQIYQMKELVYTDAQKL 306 (808)
Q Consensus 244 ~~LlVlDdv~--------~---------~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~L 306 (808)
.-.+++|.+. + .+.+..+...+. ..+..+|++|.+ | -.+..+.++.-+.
T Consensus 74 ~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~viVsnE--v----------G~g~vp~~~~~r~ 139 (169)
T cd00544 74 GDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR--NKPGTLILVSNE--V----------GLGVVPENALGRR 139 (169)
T ss_pred CCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH--cCCCcEEEEECC--c----------CCCCCCCCHHHHH
Confidence 3478999862 1 122333554444 345667777753 2 1223445555666
Q ss_pred HHHHh
Q 041551 307 FSQYA 311 (808)
Q Consensus 307 f~~~~ 311 (808)
|...+
T Consensus 140 f~d~l 144 (169)
T cd00544 140 FRDEL 144 (169)
T ss_pred HHHHH
Confidence 66655
No 243
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.18 E-value=0.0052 Score=71.98 Aligned_cols=101 Identities=21% Similarity=0.163 Sum_probs=77.0
Q ss_pred CCceeEEEecCCCCCCc-----ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCC--CCCCCCCCCCcEE
Q 041551 489 FAEVRHLEWARCPLKTL-----NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTK--LPDLSRAKNLEIL 561 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l-----~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~--~p~~~~l~~L~~L 561 (808)
+|.|+.|.+.+-.+..- ...+++|..||+++++++.+ .++++|++|+.|.+.+-.+... +-++.+|++|++|
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 78999999988654332 56789999999999999999 7899999999999988765432 2247789999999
Q ss_pred ecCCCCCCccc------cccccCCCCcCEEecCCC
Q 041551 562 WLRGCLSLVET------HSTIQYLNKLEDLDLDYC 590 (808)
Q Consensus 562 ~L~~n~~l~~~------p~~~~~l~~L~~L~l~~~ 590 (808)
|+|........ -+.-..|++|+.||.|+.
T Consensus 226 DIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 226 DISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred eccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 99986433221 122235889999998874
No 244
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.18 E-value=0.0069 Score=56.58 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=30.3
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.+|.|.|.+|.||||||+++.+++...-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 58999999999999999999999888777777765
No 245
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.12 E-value=0.018 Score=69.57 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=49.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHc-cceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLA-RKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~-~~~~ 245 (808)
..++.++|+.|+|||.||+.++..+-......+-+ ++.+......... +.....+.-....-..+.+.++ ...-
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~-dmse~~~~~~~~~----l~g~~~gyvg~~~~g~L~~~v~~~p~s 670 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGGEQNLITI-NMSEFQEAHTVSR----LKGSPPGYVGYGEGGVLTEAVRRKPYS 670 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEE-eHHHhhhhhhhcc----ccCCCCCcccccccchHHHHHHhCCCc
Confidence 55789999999999999999998664332221211 2222222111111 1111111000011112233333 4557
Q ss_pred EEEEecCCC--HHHHHHHHhccCC
Q 041551 246 LLVFDDVNN--PRQIESLIGHLDH 267 (808)
Q Consensus 246 LlVlDdv~~--~~~~~~l~~~l~~ 267 (808)
+|+||+++. ++.++.|...+..
T Consensus 671 vvllDEieka~~~v~~~Llq~ld~ 694 (852)
T TIGR03345 671 VVLLDEVEKAHPDVLELFYQVFDK 694 (852)
T ss_pred EEEEechhhcCHHHHHHHHHHhhc
Confidence 999999974 4556666666543
No 246
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.037 Score=61.35 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=43.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+=|.+||++|.|||.||++++.+..--| +.. + .-++.+.+.++.+...-+.+.+.-..-+++
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~i----s--------ApeivSGvSGESEkkiRelF~~A~~~aPci 285 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELGVPF-----LSI----S--------APEIVSGVSGESEKKIRELFDQAKSNAPCI 285 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcCCce-----Eee----c--------chhhhcccCcccHHHHHHHHHHHhccCCeE
Confidence 56688999999999999999998754332 221 1 112223333332222222222334568899
Q ss_pred EEEecCCC
Q 041551 247 LVFDDVNN 254 (808)
Q Consensus 247 lVlDdv~~ 254 (808)
+++|+++-
T Consensus 286 vFiDeIDA 293 (802)
T KOG0733|consen 286 VFIDEIDA 293 (802)
T ss_pred EEeecccc
Confidence 99999974
No 247
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.09 E-value=0.0052 Score=61.11 Aligned_cols=150 Identities=13% Similarity=0.150 Sum_probs=83.5
Q ss_pred ccCcccceEeecCCCCcc-cccch----hhcccccceeccCCCCCCCCCCC--CC-------------CCCCCcEEecCC
Q 041551 506 NICAEKLVSLKMPRSKVQ-QLWDD----VQDLVNLKEIDLSRSESLTKLPD--LS-------------RAKNLEILWLRG 565 (808)
Q Consensus 506 ~~~~~~L~~L~L~~n~l~-~l~~~----~~~l~~L~~L~L~~n~~~~~~p~--~~-------------~l~~L~~L~L~~ 565 (808)
...+++|+..+|+.|.+. ..|+. +++-+.|++|.|++|. ++.+.+ ++ +-|.|++.+...
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 345789999999999987 44443 6777899999999995 444332 32 346667666666
Q ss_pred CCCCccccc-----cccCCCCcCEEecCCCCCCCcCCCcC---------CCCCCCEEeccCCCCCCcccccccccccEEE
Q 041551 566 CLSLVETHS-----TIQYLNKLEDLDLDYCISLTSLPTSI---------HSKHLKELSLRGCSNLKIFPEITSCHMWRLE 631 (808)
Q Consensus 566 n~~l~~~p~-----~~~~l~~L~~L~l~~~~~l~~lp~~~---------~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~ 631 (808)
|+. ...|. .+..-..|+.+.+.+|. +. |..+ .+++|+.|+|
T Consensus 167 NRl-engs~~~~a~~l~sh~~lk~vki~qNg-Ir--pegv~~L~~~gl~y~~~LevLDl--------------------- 221 (388)
T COG5238 167 NRL-ENGSKELSAALLESHENLKEVKIQQNG-IR--PEGVTMLAFLGLFYSHSLEVLDL--------------------- 221 (388)
T ss_pred chh-ccCcHHHHHHHHHhhcCceeEEeeecC-cC--cchhHHHHHHHHHHhCcceeeec---------------------
Confidence 532 22221 12223456666666532 22 2211 2344455444
Q ss_pred ecccCCee-----cCcccccCCcCcEEEeecCCCccccccc----cc--CCCCCCEEEeecC
Q 041551 632 LTKVGIKE-----LPSSIECLSNLQYLYIWDCSELESISSS----IF--KLNSLESIDISNC 682 (808)
Q Consensus 632 L~~n~i~~-----lp~~~~~l~~L~~L~L~~n~~l~~lp~~----~~--~l~~L~~L~l~~c 682 (808)
..|.++. +...+...+.|+.|.+..|-+...=..+ +. ..|+|..|-..+|
T Consensus 222 -qDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn 282 (388)
T COG5238 222 -QDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN 282 (388)
T ss_pred -cccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence 4444442 2223455667899999888764321111 11 2455665555554
No 248
>PTZ00202 tuzin; Provisional
Probab=96.07 E-value=0.024 Score=61.17 Aligned_cols=133 Identities=13% Similarity=0.096 Sum_probs=77.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCccc---ccHHHHHHHH---
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRIL---RDVRSQLNRL--- 240 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~---~~~~~l~~~L--- 240 (808)
.+++.|.|++|+|||||++.+..... ...++.+.. +..++++.++..+.-.... +..+.+.+.+
T Consensus 286 privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~ 355 (550)
T PTZ00202 286 PRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKALGVPNVEACGDLLDFISEACRRA 355 (550)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHH
Confidence 46899999999999999999997653 225554332 4577777777776643222 3444444443
Q ss_pred --c-cceEEEEEe--cCCCHHH-HHHHHhccCCCCCCCEEEEEeCchhhhhh---cCCCeEEEecCCChhhHHHHHHHH
Q 041551 241 --A-RKMVLLVFD--DVNNPRQ-IESLIGHLDHLASGSRVIITTRDKQVLKN---CWAGQIYQMKELVYTDAQKLFSQY 310 (808)
Q Consensus 241 --~-~~~~LlVlD--dv~~~~~-~~~l~~~l~~~~~gs~IiiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~Lf~~~ 310 (808)
. +++.+||+- +-.+..- ..+... +.....-|+|++---.+.+... ..--+-|-++.++.++|.+.-...
T Consensus 356 ~~e~GrtPVLII~lreg~~l~rvyne~v~-la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 356 KKMNGETPLLVLKLREGSSLQRVYNEVVA-LACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred HHhCCCCEEEEEEecCCCcHHHHHHHHHH-HHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 2 566777764 2222221 222211 1112345677765443332111 122367899999999998875543
No 249
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.02 E-value=0.0037 Score=62.19 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=59.7
Q ss_pred hhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCC--CCCccccccccCCCCcCEEecCCCCCCC---cCCCcCCCC
Q 041551 529 VQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGC--LSLVETHSTIQYLNKLEDLDLDYCISLT---SLPTSIHSK 603 (808)
Q Consensus 529 ~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n--~~l~~~p~~~~~l~~L~~L~l~~~~~l~---~lp~~~~l~ 603 (808)
...+..|+.|++.++. ++.+..+-.|++|+.|.++.| .....++.....+++|++|++++|. +. ++++.-.+.
T Consensus 39 ~d~~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhc
Confidence 4455667777777764 444445678889999999998 5566666667778999999999964 44 333333667
Q ss_pred CCCEEeccCCC
Q 041551 604 HLKELSLRGCS 614 (808)
Q Consensus 604 ~L~~L~L~~~~ 614 (808)
+|..|++.+|+
T Consensus 117 nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 117 NLKSLDLFNCS 127 (260)
T ss_pred chhhhhcccCC
Confidence 88888888875
No 250
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.17 Score=58.64 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=90.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~ 245 (808)
++=|.++|++|.|||-||++++-+. .+=|++.... ++.+ -..+.. ...++.+...- .+.++
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svSGS--------EFvE----~~~g~~-asrvr~lf~~ar~~aP~ 405 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVSGS--------EFVE----MFVGVG-ASRVRDLFPLARKNAPS 405 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhccc-----CCceeeechH--------HHHH----Hhcccc-hHHHHHHHHHhhccCCe
Confidence 5668899999999999999999642 2334442111 1111 111111 11222222221 35678
Q ss_pred EEEEecCCC-----------------HHHHHHHHhccCCCCCCCEEEE--EeCchhhhhhc-----CCCeEEEecCCChh
Q 041551 246 LLVFDDVNN-----------------PRQIESLIGHLDHLASGSRVII--TTRDKQVLKNC-----WAGQIYQMKELVYT 301 (808)
Q Consensus 246 LlVlDdv~~-----------------~~~~~~l~~~l~~~~~gs~Iii--TTR~~~v~~~~-----~~~~~~~l~~L~~~ 301 (808)
.+.+|+++. ...+++++...+.+..+..||+ +|+..+++... ..+..+.++.-+..
T Consensus 406 iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~ 485 (774)
T KOG0731|consen 406 IIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVK 485 (774)
T ss_pred EEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchh
Confidence 888888753 2237778777776655554433 66666654331 23467778888888
Q ss_pred hHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhh
Q 041551 302 DAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLA 338 (808)
Q Consensus 302 ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 338 (808)
...+.|.-++-..... .+..++++ |+....|.+=|
T Consensus 486 ~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 486 GRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred hhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 8899999888433322 34455566 88888887754
No 251
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.95 E-value=0.024 Score=68.68 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=51.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccce-E
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKM-V 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~-~ 245 (808)
..++.++|+.|+|||+||+.+++.+-..-...+-+. ..+......... +...-.+.-..+....+.+.++.++ .
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~~~~~----l~g~~~gyvg~~~~~~l~~~~~~~p~~ 613 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKHTVSK----LIGSPPGYVGYNEGGQLTEAVRKKPYT 613 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccccccHHH----hcCCCCcccCcCccchHHHHHHhCCCe
Confidence 346779999999999999999986533222222222 222222222211 1111001001122233455555444 6
Q ss_pred EEEEecCCC--HHHHHHHHhccCC
Q 041551 246 LLVFDDVNN--PRQIESLIGHLDH 267 (808)
Q Consensus 246 LlVlDdv~~--~~~~~~l~~~l~~ 267 (808)
+++||+++. ++.++.|+..+..
T Consensus 614 VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 614 VVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred EEEECChhhCCHHHHHHHHHHhcc
Confidence 899999974 5567777766543
No 252
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.94 E-value=0.085 Score=64.01 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=67.7
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcc-c-----CceEEEecchhhhhccCHHHHHHHHHhhHh-cCcccccHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRH-F-----EGSYFAQNVREAEETGGIKDLQKELLSDVL-NDRILRDVRSQLNRL 240 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~-F-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~-~~~~~~~~~~l~~~L 240 (808)
.-+.++|.+|+|||++|+.++.++... - ...+|..+... +.. ... ..+..+.+..+.+.+
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~---------l~a----g~~~~ge~e~rl~~i~~~~ 267 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL---------LLA----GTKYRGEFEERLKRIFDEI 267 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH---------Hhc----cCCCccHHHHHHHHHHHHH
Confidence 346799999999999999999976431 1 23444332211 110 000 000112233333333
Q ss_pred -ccceEEEEEecCCCH----------HHHHHHHhccCCCCCCCEEEEEeCchhhhhh------c-CCCeEEEecCCChhh
Q 041551 241 -ARKMVLLVFDDVNNP----------RQIESLIGHLDHLASGSRVIITTRDKQVLKN------C-WAGQIYQMKELVYTD 302 (808)
Q Consensus 241 -~~~~~LlVlDdv~~~----------~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~------~-~~~~~~~l~~L~~~e 302 (808)
..++.+|++|+++.. +.-+-+.+.+.. ..-++|.+|........ . .....+.++..+.++
T Consensus 268 ~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e 345 (821)
T CHL00095 268 QENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEE 345 (821)
T ss_pred HhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHH
Confidence 246799999998521 112233333321 22345555554433111 1 123567888899999
Q ss_pred HHHHHHHH
Q 041551 303 AQKLFSQY 310 (808)
Q Consensus 303 a~~Lf~~~ 310 (808)
...++...
T Consensus 346 ~~aILr~l 353 (821)
T CHL00095 346 TIEILFGL 353 (821)
T ss_pred HHHHHHHH
Confidence 88887653
No 253
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.94 E-value=0.1 Score=63.27 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=66.4
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhccc------CceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH--
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-- 240 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-- 240 (808)
-+.++|.+|+|||+||+.++.++.... ...+|..++.. +.... .. ..+..+.++.+.+.+
T Consensus 201 n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~---------l~ag~--~~-~g~~e~~lk~~~~~~~~ 268 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA---------LVAGA--KY-RGEFEERLKGVLNDLAK 268 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh---------hhhcc--ch-hhhhHHHHHHHHHHHHH
Confidence 467999999999999999999764421 22333322211 10000 00 000012223333332
Q ss_pred ccceEEEEEecCCCHH----------HHHHHHhccCCCCCCCEEEEEeCchhhhhhc-------CCCeEEEecCCChhhH
Q 041551 241 ARKMVLLVFDDVNNPR----------QIESLIGHLDHLASGSRVIITTRDKQVLKNC-------WAGQIYQMKELVYTDA 303 (808)
Q Consensus 241 ~~~~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~-------~~~~~~~l~~L~~~ea 303 (808)
.+.+.+|++|+++... .-+-+.+.+. ...-++|-+|...+..... .....+.+..-+.++.
T Consensus 269 ~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~ 346 (857)
T PRK10865 269 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDT 346 (857)
T ss_pred cCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHH
Confidence 2468999999986432 1233333332 1233455554444321110 1123566777788999
Q ss_pred HHHHHHHh
Q 041551 304 QKLFSQYA 311 (808)
Q Consensus 304 ~~Lf~~~~ 311 (808)
.+++....
T Consensus 347 ~~iL~~l~ 354 (857)
T PRK10865 347 IAILRGLK 354 (857)
T ss_pred HHHHHHHh
Confidence 99886654
No 254
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.92 E-value=0.023 Score=57.27 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=30.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
-.++.|.|.+|+||||+|.+++.....+-..++|++
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 678999999999999999999987655545667775
No 255
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=95.89 E-value=0.017 Score=60.53 Aligned_cols=147 Identities=17% Similarity=0.210 Sum_probs=82.2
Q ss_pred hHhhhcccCCccc--eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHh-cCccc
Q 041551 154 LTEAANLSGFDSH--VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVL-NDRIL 230 (808)
Q Consensus 154 l~~~~~~~g~~~~--~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~-~~~~~ 230 (808)
....+.+.|..+. ...|-|+|-.|.|||.+.+++.+... ...+|+..+.. ...+.+...++.+.. ..++.
T Consensus 15 i~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~~ec----ft~~~lle~IL~~~~~~d~dg 87 (438)
T KOG2543|consen 15 IRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNCVEC----FTYAILLEKILNKSQLADKDG 87 (438)
T ss_pred HHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---CcceeeehHHh----ccHHHHHHHHHHHhccCCCch
Confidence 3444455555444 34458999999999999999998652 34678885443 445555556655553 11111
Q ss_pred -------ccH----HHHHH--HHc--cceEEEEEecCCCHHHHHH--------HHhccCCCCCCCEEEEEeCchhhhhh-
Q 041551 231 -------RDV----RSQLN--RLA--RKMVLLVFDDVNNPRQIES--------LIGHLDHLASGSRVIITTRDKQVLKN- 286 (808)
Q Consensus 231 -------~~~----~~l~~--~L~--~~~~LlVlDdv~~~~~~~~--------l~~~l~~~~~gs~IiiTTR~~~v~~~- 286 (808)
+.+ ..+.+ ..+ ++.++||||+++...+.+. +-..++ ...-+|+++--......
T Consensus 88 ~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~---~~~i~iils~~~~e~~y~ 164 (438)
T KOG2543|consen 88 DKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN---EPTIVIILSAPSCEKQYL 164 (438)
T ss_pred hhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC---CCceEEEEeccccHHHhh
Confidence 111 11222 122 3589999999987544221 111222 22334555443322111
Q ss_pred --cCCC--eEEEecCCChhhHHHHHHHH
Q 041551 287 --CWAG--QIYQMKELVYTDAQKLFSQY 310 (808)
Q Consensus 287 --~~~~--~~~~l~~L~~~ea~~Lf~~~ 310 (808)
++.. .++..+.-+.+|..+++.+.
T Consensus 165 ~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 165 INTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2222 35567888999999888653
No 256
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.89 E-value=0.043 Score=59.03 Aligned_cols=115 Identities=19% Similarity=0.239 Sum_probs=64.9
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhccc---------------------CceEEEecchhhhhccC---HHHHHHHHHhhH
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHF---------------------EGSYFAQNVREAEETGG---IKDLQKELLSDV 224 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F---------------------~~~~~~~~~~~~~~~~~---~~~l~~~ll~~~ 224 (808)
.+.++|++|+||||+|.++++.+-... +....+.. +.... ..+..+++....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~----s~~~~~~i~~~~vr~~~~~~ 101 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP----SDLRKIDIIVEQVRELAEFL 101 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc----cccCCCcchHHHHHHHHHHh
Confidence 488999999999999999999765322 22233221 11111 112222222111
Q ss_pred hcCcccccHHHHHHHHccceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEeCch-hhhhhc-CCCeEEEecCC
Q 041551 225 LNDRILRDVRSQLNRLARKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITTRDK-QVLKNC-WAGQIYQMKEL 298 (808)
Q Consensus 225 ~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~~-~~~~~~~l~~L 298 (808)
.... ..++.-++|+|+++.. +....+...+......+++|++|... .+.... .....+++.+.
T Consensus 102 ~~~~-----------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~~ 168 (325)
T COG0470 102 SESP-----------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKPP 168 (325)
T ss_pred ccCC-----------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCCc
Confidence 1000 0256789999999864 44666766666667788888888743 233221 12345666653
No 257
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.06 Score=53.41 Aligned_cols=104 Identities=24% Similarity=0.415 Sum_probs=58.3
Q ss_pred cCCccceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH
Q 041551 161 SGFDSHVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL 240 (808)
Q Consensus 161 ~g~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L 240 (808)
.|.++ .+=|.++|++|.|||-+|++|+|+.. .+|+..+.. ++.++. .++ ....++.+.+.-
T Consensus 206 lgidp-pkgvllygppgtgktl~aravanrtd-----acfirvigs--------elvqky----vge-garmvrelf~ma 266 (435)
T KOG0729|consen 206 LGIDP-PKGVLLYGPPGTGKTLCARAVANRTD-----ACFIRVIGS--------ELVQKY----VGE-GARMVRELFEMA 266 (435)
T ss_pred cCCCC-CCceEEeCCCCCchhHHHHHHhcccC-----ceEEeehhH--------HHHHHH----hhh-hHHHHHHHHHHh
Confidence 36665 56678999999999999999999753 456654322 112211 111 012223333333
Q ss_pred cc-ceEEEEEecCCC-------------HH---HHHHHHhccCCCCC--CCEEEEEeCchhh
Q 041551 241 AR-KMVLLVFDDVNN-------------PR---QIESLIGHLDHLAS--GSRVIITTRDKQV 283 (808)
Q Consensus 241 ~~-~~~LlVlDdv~~-------------~~---~~~~l~~~l~~~~~--gs~IiiTTR~~~v 283 (808)
+. |-+++.+|.++- .+ ..-++...+..+.+ +-+|++.|..++.
T Consensus 267 rtkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdt 328 (435)
T KOG0729|consen 267 RTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDT 328 (435)
T ss_pred cccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCC
Confidence 44 558888888742 11 12234444554444 4577887766654
No 258
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.053 Score=62.03 Aligned_cols=128 Identities=17% Similarity=0.236 Sum_probs=75.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHH-HHHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQL-NRLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~-~~L~~~~~ 245 (808)
.+.+.++|++|.|||.||+++++.....|-.+..- .+..+.+ ++.. ..++.+. ...+..++
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-------------~l~sk~v----Gese-k~ir~~F~~A~~~~p~ 337 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-------------ELLSKWV----GESE-KNIRELFEKARKLAPS 337 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-------------HHhcccc----chHH-HHHHHHHHHHHcCCCc
Confidence 55789999999999999999999655544332211 1111111 1111 1122222 22356789
Q ss_pred EEEEecCCCH-------------HHHHHHHhccCCCCC--CCEEEEEeCchhhhhhc-----CCCeEEEecCCChhhHHH
Q 041551 246 LLVFDDVNNP-------------RQIESLIGHLDHLAS--GSRVIITTRDKQVLKNC-----WAGQIYQMKELVYTDAQK 305 (808)
Q Consensus 246 LlVlDdv~~~-------------~~~~~l~~~l~~~~~--gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~ 305 (808)
.|.+|.++.. ..+..++..+..... +..||-||-..+..... ..+..+.++.-+.++..+
T Consensus 338 iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~ 417 (494)
T COG0464 338 IIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLE 417 (494)
T ss_pred EEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHH
Confidence 9999998641 234455555432233 33344455544433221 235688899999999999
Q ss_pred HHHHHhh
Q 041551 306 LFSQYAF 312 (808)
Q Consensus 306 Lf~~~~~ 312 (808)
.|..+.-
T Consensus 418 i~~~~~~ 424 (494)
T COG0464 418 IFKIHLR 424 (494)
T ss_pred HHHHHhc
Confidence 9999883
No 259
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.84 E-value=0.039 Score=56.86 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=22.4
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
.|.++|++|+||||+|++++......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999876543
No 260
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.80 E-value=0.011 Score=56.71 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.6
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
++.|.|.+|.||||+|..++.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58899999999999999998764
No 261
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.072 Score=57.46 Aligned_cols=150 Identities=18% Similarity=0.224 Sum_probs=80.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
-|=-.++|++|.|||++..++++.+ +.-++.-.+.++....+ ++.++.. ...+-.
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n~d----Lr~LL~~-----------------t~~kSI 289 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLDSD----LRHLLLA-----------------TPNKSI 289 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCcHH----HHHHHHh-----------------CCCCcE
Confidence 3446699999999999999999754 33344433322222211 2222222 245567
Q ss_pred EEEecCCCHH--------------------HHHHHHhccC--CCCC-CCEEEE-EeCchhhhhh--c---CCCeEEEecC
Q 041551 247 LVFDDVNNPR--------------------QIESLIGHLD--HLAS-GSRVII-TTRDKQVLKN--C---WAGQIYQMKE 297 (808)
Q Consensus 247 lVlDdv~~~~--------------------~~~~l~~~l~--~~~~-gs~Iii-TTR~~~v~~~--~---~~~~~~~l~~ 297 (808)
||+.|++-.- .+--|+..+. |..+ +-|||| ||-..+-+.. + ..+..+.+.-
T Consensus 290 ivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgy 369 (457)
T KOG0743|consen 290 LLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGY 369 (457)
T ss_pred EEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCC
Confidence 7777775320 1222444443 2233 346655 6665543221 1 1234567778
Q ss_pred CChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhh
Q 041551 298 LVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYL 346 (808)
Q Consensus 298 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L 346 (808)
-+.+.-..|+.++..... ++ .+..+|.+...|.-+.=..++..|
T Consensus 370 Ctf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 370 CTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 888888888888773211 22 344555555555544444444444
No 262
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.75 E-value=0.015 Score=55.60 Aligned_cols=28 Identities=29% Similarity=0.378 Sum_probs=23.5
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
+.|.+.|.+|+||||+|++++..+++.-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 4678999999999999999998665543
No 263
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.74 E-value=0.0085 Score=54.47 Aligned_cols=22 Identities=50% Similarity=0.638 Sum_probs=20.4
Q ss_pred EEEeecCCCcHhHHHHHHHHHh
Q 041551 170 IWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~ 191 (808)
|+|.|.+|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999875
No 264
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.74 E-value=0.13 Score=62.79 Aligned_cols=129 Identities=18% Similarity=0.156 Sum_probs=68.5
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhccc------CceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLA 241 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~ 241 (808)
.-+.++|.+|+|||++|+.++.++...+ ...+|..++.. +.... ... .+....+..+.+.+.
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~---------l~a~~--~~~-g~~e~~l~~~l~~~~ 262 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA---------LIAGA--KYR-GEFEERLKAVLNEVT 262 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH---------Hhhcc--hhh-hhHHHHHHHHHHHHH
Confidence 3466899999999999999999865432 22333332111 11000 000 001122333333332
Q ss_pred --cceEEEEEecCCCHH----------HHHHHHhccCCCCCC-CEEEEEeCchhhhhhc-------CCCeEEEecCCChh
Q 041551 242 --RKMVLLVFDDVNNPR----------QIESLIGHLDHLASG-SRVIITTRDKQVLKNC-------WAGQIYQMKELVYT 301 (808)
Q Consensus 242 --~~~~LlVlDdv~~~~----------~~~~l~~~l~~~~~g-s~IiiTTR~~~v~~~~-------~~~~~~~l~~L~~~ 301 (808)
+++.+|++|+++... ..+.+.+.+ ..| -++|-+|.....-... .....+.++..+.+
T Consensus 263 ~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~ 339 (852)
T TIGR03346 263 KSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVE 339 (852)
T ss_pred hcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHH
Confidence 468999999986431 223333332 222 3444444444321100 12246789999999
Q ss_pred hHHHHHHHHh
Q 041551 302 DAQKLFSQYA 311 (808)
Q Consensus 302 ea~~Lf~~~~ 311 (808)
+..+++....
T Consensus 340 ~~~~iL~~~~ 349 (852)
T TIGR03346 340 DTISILRGLK 349 (852)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 265
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.74 E-value=0.051 Score=50.64 Aligned_cols=112 Identities=21% Similarity=0.206 Sum_probs=58.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
-.+++|.|..|.|||||++.++.... ...+.+++.......--+. ++ .. ....-.+...+..++-+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~~~~--------lS----~G-~~~rv~laral~~~p~i 91 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQ--------LS----GG-EKMRLALAKLLLENPNL 91 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEEEcc--------CC----HH-HHHHHHHHHHHhcCCCE
Confidence 35789999999999999999886432 2244444432100000000 00 00 01112233445567778
Q ss_pred EEEecCC---CHHHHHHHHhccCCCCCCCEEEEEeCchhhhhhcCCCeEEEe
Q 041551 247 LVFDDVN---NPRQIESLIGHLDHLASGSRVIITTRDKQVLKNCWAGQIYQM 295 (808)
Q Consensus 247 lVlDdv~---~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 295 (808)
+++|+.. |....+.+...+... +..||++|.+.+..... .+.++.+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 9999864 333333333333322 34688888877655432 2344443
No 266
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.71 E-value=0.0094 Score=58.81 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=23.3
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
||+|.|.+|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999977643
No 267
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.67 E-value=0.021 Score=59.07 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=23.0
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
+.|.|+|.+|+||||+|+++...+...=..+.++.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 46899999999999999999987665323344444
No 268
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.64 E-value=0.031 Score=63.22 Aligned_cols=72 Identities=21% Similarity=0.325 Sum_probs=45.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH--ccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL--ARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L--~~~~ 244 (808)
-++..++|++|+||||||.-++++-. |. ++=+. +|.......+-..+...+... ..+ .+++
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEIN----ASDeRt~~~v~~kI~~avq~~----------s~l~adsrP 388 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEIN----ASDERTAPMVKEKIENAVQNH----------SVLDADSRP 388 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcC--ce-EEEec----ccccccHHHHHHHHHHHHhhc----------cccccCCCc
Confidence 78999999999999999999987532 21 22222 244444444444443333221 122 2578
Q ss_pred EEEEEecCCCH
Q 041551 245 VLLVFDDVNNP 255 (808)
Q Consensus 245 ~LlVlDdv~~~ 255 (808)
.-||+|.++-.
T Consensus 389 ~CLViDEIDGa 399 (877)
T KOG1969|consen 389 VCLVIDEIDGA 399 (877)
T ss_pred ceEEEecccCC
Confidence 88999999853
No 269
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.62 E-value=0.068 Score=63.43 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=67.8
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcc------cCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-c
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRH------FEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-A 241 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~------F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~ 241 (808)
-+.++|.+|+|||++|+.++.++... ....+|.... ..+.. ......+..+.++.+.+.+ +
T Consensus 209 n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~---------~~lla---G~~~~Ge~e~rl~~l~~~l~~ 276 (758)
T PRK11034 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI---------GSLLA---GTKYRGDFEKRFKALLKQLEQ 276 (758)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH---------HHHhc---ccchhhhHHHHHHHHHHHHHh
Confidence 45689999999999999999865332 1233332211 11110 0000001112233333333 3
Q ss_pred cceEEEEEecCCCH----------HHHH-HHHhccCCCCCCCEEEEEeCchhhhhhc-------CCCeEEEecCCChhhH
Q 041551 242 RKMVLLVFDDVNNP----------RQIE-SLIGHLDHLASGSRVIITTRDKQVLKNC-------WAGQIYQMKELVYTDA 303 (808)
Q Consensus 242 ~~~~LlVlDdv~~~----------~~~~-~l~~~l~~~~~gs~IiiTTR~~~v~~~~-------~~~~~~~l~~L~~~ea 303 (808)
..+.+|++|+++.. .+.. .+.+.+. ...-++|-+|...+..... .-...+.++..+.+++
T Consensus 277 ~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~ 354 (758)
T PRK11034 277 DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEET 354 (758)
T ss_pred cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHH
Confidence 45689999999632 1222 2333332 1223444444433321110 1235789999999999
Q ss_pred HHHHHHHh
Q 041551 304 QKLFSQYA 311 (808)
Q Consensus 304 ~~Lf~~~~ 311 (808)
.+++....
T Consensus 355 ~~IL~~~~ 362 (758)
T PRK11034 355 VQIINGLK 362 (758)
T ss_pred HHHHHHHH
Confidence 99988654
No 270
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.60 E-value=0.0073 Score=53.86 Aligned_cols=31 Identities=32% Similarity=0.571 Sum_probs=22.0
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhcccCceEE
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISRHFEGSYF 200 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~ 200 (808)
|.|+|.+|+||||+|+.++..+...|..+-+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~ 32 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQF 32 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE-
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEe
Confidence 6799999999999999999998888876544
No 271
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.56 E-value=0.048 Score=55.58 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=28.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc------cCceEEEec
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH------FEGSYFAQN 203 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~------F~~~~~~~~ 203 (808)
-.++.|+|.+|.|||+||.+++...... -..++|++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 6789999999999999999998643222 257788873
No 272
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.054 Score=58.14 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=27.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.++|+++|.+|+||||++..++..+..+=..+.++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 578999999999999999999987654433344444
No 273
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.56 E-value=0.11 Score=51.23 Aligned_cols=76 Identities=18% Similarity=0.331 Sum_probs=51.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH--ccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL--ARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L--~~~~ 244 (808)
..-|.+||--|.|||.|++++.+.+.+..-.-+=|. ...- ..+..+.+.| ...|
T Consensus 85 ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~----k~dl--------------------~~Lp~l~~~Lr~~~~k 140 (287)
T COG2607 85 ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD----KEDL--------------------ATLPDLVELLRARPEK 140 (287)
T ss_pred ccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc----HHHH--------------------hhHHHHHHHHhcCCce
Confidence 445889999999999999999999888776644333 0111 1123333334 3688
Q ss_pred EEEEEecCC---CHHHHHHHHhccC
Q 041551 245 VLLVFDDVN---NPRQIESLIGHLD 266 (808)
Q Consensus 245 ~LlVlDdv~---~~~~~~~l~~~l~ 266 (808)
+.|..||.. +.+..+.+...+.
T Consensus 141 FIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 141 FILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred EEEEecCCCCCCCchHHHHHHHHhc
Confidence 999999984 3445677766664
No 274
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=0.00082 Score=66.83 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=37.0
Q ss_pred ccEEEecccCCeecCc--ccccCCcCcEEEeecCCCccccccc-----ccCCCCCCEEE
Q 041551 627 MWRLELTKVGIKELPS--SIECLSNLQYLYIWDCSELESISSS-----IFKLNSLESID 678 (808)
Q Consensus 627 L~~L~L~~n~i~~lp~--~~~~l~~L~~L~L~~n~~l~~lp~~-----~~~l~~L~~L~ 678 (808)
|++|+|..|.|..+.+ .+.++++|+.|.|..|+-.+.-+.. +..||+|+.||
T Consensus 65 LkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 65 LKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 5555566666665533 3788999999999999876655432 56688888887
No 275
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.49 E-value=0.13 Score=48.20 Aligned_cols=24 Identities=46% Similarity=0.769 Sum_probs=21.4
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
+|.|+|.+|.||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998764
No 276
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.49 E-value=0.066 Score=50.35 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=18.3
Q ss_pred EeecCCCcHhHHHHHHHHHh
Q 041551 172 IWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 172 I~G~gGiGKTtLA~~~~~~~ 191 (808)
|.|++|+||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999865
No 277
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.46 E-value=0.038 Score=54.51 Aligned_cols=102 Identities=21% Similarity=0.241 Sum_probs=53.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH------
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL------ 240 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L------ 240 (808)
-+++.|.|.+|.||||+++.+...+...=..++++.-.. .....+.+.. + .....+..+....
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~-----~Aa~~L~~~~-----~-~~a~Ti~~~l~~~~~~~~~ 86 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN-----KAAKELREKT-----G-IEAQTIHSFLYRIPNGDDE 86 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH-----HHHHHHHHHH-----T-S-EEEHHHHTTEECCEECC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH-----HHHHHHHHhh-----C-cchhhHHHHHhcCCccccc
Confidence 457889999999999999998886655423334433111 1112222221 1 1112222222211
Q ss_pred ----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCch
Q 041551 241 ----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDK 281 (808)
Q Consensus 241 ----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~ 281 (808)
..++-+||+|++.. ..++..+...... .|+|+|+.-=..
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 12335999999874 4567777766543 577887765444
No 278
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.077 Score=52.24 Aligned_cols=35 Identities=34% Similarity=0.525 Sum_probs=28.6
Q ss_pred ccCCccceeEEEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 160 LSGFDSHVISIWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 160 ~~g~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
-.|.|+ .+=|.++|++|.|||.||+++++.....|
T Consensus 183 qigidp-prgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 183 QIGIDP-PRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred HhCCCC-CcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 457776 66688999999999999999999765544
No 279
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.42 E-value=0.096 Score=49.83 Aligned_cols=114 Identities=19% Similarity=0.126 Sum_probs=59.8
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHh--cC-------ccc-------c
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVL--ND-------RIL-------R 231 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~--~~-------~~~-------~ 231 (808)
..|-|++-.|-||||.|..++-+...+=-.++.+.-++.. ...+-....+.+.-... +. +.. +
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 4577788899999999999888755543344333322221 11122222222200000 00 000 2
Q ss_pred cHHHHHHHHc-cceEEEEEecCCCHH-----HHHHHHhccCCCCCCCEEEEEeCchh
Q 041551 232 DVRSQLNRLA-RKMVLLVFDDVNNPR-----QIESLIGHLDHLASGSRVIITTRDKQ 282 (808)
Q Consensus 232 ~~~~l~~~L~-~~~~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~IiiTTR~~~ 282 (808)
..+..++.+. +.-=|+|||.+...- ..+++...+.....+..||+|-|+..
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 3344445554 345699999985321 12233333333456778999999874
No 280
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.42 E-value=0.041 Score=59.44 Aligned_cols=109 Identities=15% Similarity=0.159 Sum_probs=65.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe-cchhhhhccCHHHHHHHHHhhH-hcCcccccHHHHHHHHccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ-NVREAEETGGIKDLQKELLSDV-LNDRILRDVRSQLNRLARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~-~~~~~~~~~~~~~l~~~ll~~~-~~~~~~~~~~~l~~~L~~~~ 244 (808)
-..|.|.|..|.||||+.+.+.+.+.......++.. +-.+.... .. ..+..+. .+.......+.++..|+..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~-~~----~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHR-NK----RSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhcc-Cc----cceEEccccCCCCcCHHHHHHHhhccCC
Confidence 356999999999999999999887765555555432 21111100 00 0001100 11111234455667788899
Q ss_pred EEEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhh
Q 041551 245 VLLVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQV 283 (808)
Q Consensus 245 ~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v 283 (808)
=.|++|.+.+.+.+....... ..|..|+.|.-..+.
T Consensus 197 d~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 197 DVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNSA 232 (343)
T ss_pred CEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCH
Confidence 999999999988776544432 346666666665544
No 281
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.41 E-value=0.061 Score=64.81 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=24.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
.+++.++|++|+|||++|+.+++.+...|
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 35799999999999999999999875544
No 282
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.072 Score=56.71 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=51.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHH--HHHHhhHhcCccc-----ccHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQ--KELLSDVLNDRIL-----RDVRSQLNR 239 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~--~~ll~~~~~~~~~-----~~~~~l~~~ 239 (808)
-.+|.|-|-+|||||||..+++.++..+- .+.||+. .+...++. .+-+.- ..++. ..++.+.+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG------EES~~QiklRA~RL~~--~~~~l~l~aEt~~e~I~~~ 163 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG------EESLQQIKLRADRLGL--PTNNLYLLAETNLEDIIAE 163 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC------CcCHHHHHHHHHHhCC--CccceEEehhcCHHHHHHH
Confidence 56899999999999999999999988777 7888873 22222221 111110 01111 445666666
Q ss_pred Hc-cceEEEEEecCC
Q 041551 240 LA-RKMVLLVFDDVN 253 (808)
Q Consensus 240 L~-~~~~LlVlDdv~ 253 (808)
+. .++-++|+|-+.
T Consensus 164 l~~~~p~lvVIDSIQ 178 (456)
T COG1066 164 LEQEKPDLVVIDSIQ 178 (456)
T ss_pred HHhcCCCEEEEeccc
Confidence 64 577899999874
No 283
>PTZ00301 uridine kinase; Provisional
Probab=95.34 E-value=0.014 Score=57.89 Aligned_cols=29 Identities=24% Similarity=0.435 Sum_probs=24.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
..+|+|.|.+|.||||||+.+..++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999998775544
No 284
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.34 E-value=0.083 Score=51.37 Aligned_cols=119 Identities=16% Similarity=0.160 Sum_probs=59.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecch--hhhhcc--CHHHHHHHHHhhHh-----cCccc------c
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVR--EAEETG--GIKDLQKELLSDVL-----NDRIL------R 231 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~--~~~~~~--~~~~l~~~ll~~~~-----~~~~~------~ 231 (808)
-.+++|.|..|.|||||++.++-... ...+.+++.... ...... .......+++.... ..... .
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 35799999999999999999886432 234555554211 000000 00000111121111 11100 1
Q ss_pred cHHHHHHHHccceEEEEEecCC---CHHHHHHHHhccCCC-CC-CCEEEEEeCchhhhhh
Q 041551 232 DVRSQLNRLARKMVLLVFDDVN---NPRQIESLIGHLDHL-AS-GSRVIITTRDKQVLKN 286 (808)
Q Consensus 232 ~~~~l~~~L~~~~~LlVlDdv~---~~~~~~~l~~~l~~~-~~-gs~IiiTTR~~~v~~~ 286 (808)
..-.+-..+...+-++++|+.. |.+..+.+...+... .. |..||++|.+.+....
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 1222334456778899999864 333333333333211 22 6678889888765533
No 285
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.14 Score=57.06 Aligned_cols=127 Identities=23% Similarity=0.347 Sum_probs=78.8
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMVL 246 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~L 246 (808)
.=|.+||++|.|||-||++|+|+-...| ++.- +. + ++....++. ...++.+.++- ..-++.
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NF-----isVK-------GP-E----LlNkYVGES-ErAVR~vFqRAR~saPCV 607 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANF-----ISVK-------GP-E----LLNKYVGES-ERAVRQVFQRARASAPCV 607 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCce-----Eeec-------CH-H----HHHHHhhhH-HHHHHHHHHHhhcCCCeE
Confidence 3478999999999999999999876655 3211 10 1 222222221 13344444433 357899
Q ss_pred EEEecCCC-------------HHHHHHHHhccCCC--CCCCEEEEEeCchhhhhh-c----CCCeEEEecCCChhhHHHH
Q 041551 247 LVFDDVNN-------------PRQIESLIGHLDHL--ASGSRVIITTRDKQVLKN-C----WAGQIYQMKELVYTDAQKL 306 (808)
Q Consensus 247 lVlDdv~~-------------~~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~L 306 (808)
|.+|.++. ...+.+|+..+... ..|--||-.|..+++... + ..+...-|+.-+.+|-.++
T Consensus 608 IFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~I 687 (802)
T KOG0733|consen 608 IFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAI 687 (802)
T ss_pred EEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHH
Confidence 99999864 22366777666543 245556666666655322 1 2345677888888898999
Q ss_pred HHHHhh
Q 041551 307 FSQYAF 312 (808)
Q Consensus 307 f~~~~~ 312 (808)
++...-
T Consensus 688 LK~~tk 693 (802)
T KOG0733|consen 688 LKTITK 693 (802)
T ss_pred HHHHhc
Confidence 888773
No 286
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.23 Score=50.34 Aligned_cols=154 Identities=17% Similarity=0.192 Sum_probs=80.5
Q ss_pred cCCccceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH
Q 041551 161 SGFDSHVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL 240 (808)
Q Consensus 161 ~g~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L 240 (808)
.|...+-+-|.++|++|.||+-||++|+.+... -|++... .++...++.+. ...+..+.+.-
T Consensus 160 tGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-----TFFSvSS--------SDLvSKWmGES-----EkLVknLFemA 221 (439)
T KOG0739|consen 160 TGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-----TFFSVSS--------SDLVSKWMGES-----EKLVKNLFEMA 221 (439)
T ss_pred cCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-----ceEEeeh--------HHHHHHHhccH-----HHHHHHHHHHH
Confidence 354444778999999999999999999976432 2333211 12333332221 12233333322
Q ss_pred -ccceEEEEEecCCCH---------HHHHHHHhc-------cCCCCCCCEEEEEeCchhhhhhc---CC-CeEEEecCCC
Q 041551 241 -ARKMVLLVFDDVNNP---------RQIESLIGH-------LDHLASGSRVIITTRDKQVLKNC---WA-GQIYQMKELV 299 (808)
Q Consensus 241 -~~~~~LlVlDdv~~~---------~~~~~l~~~-------l~~~~~gs~IiiTTR~~~v~~~~---~~-~~~~~l~~L~ 299 (808)
.+++-.|.+|.|+.. +.-+.+... ......|.-|+=.|..+-++... .. ..+|. +|.
T Consensus 222 Re~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI--PLP 299 (439)
T KOG0739|consen 222 RENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI--PLP 299 (439)
T ss_pred HhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec--cCC
Confidence 468899999999641 122222211 12223455555567666555432 11 12332 455
Q ss_pred hhhHH-HHHHHHhhcCCCCCchHHHHHHHHHHHhcCch
Q 041551 300 YTDAQ-KLFSQYAFRGGHLDSSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 300 ~~ea~-~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glP 336 (808)
+..|. .+|.-+.+ ..+....+..-+++.++..|.-
T Consensus 300 e~~AR~~MF~lhlG--~tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 300 EAHARARMFKLHLG--DTPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred cHHHhhhhheeccC--CCccccchhhHHHHHhhcCCCC
Confidence 55555 45655552 2333333444566666666643
No 287
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.30 E-value=0.014 Score=46.51 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.0
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
+|+|.|..|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 288
>PRK04040 adenylate kinase; Provisional
Probab=95.30 E-value=0.021 Score=55.86 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=22.8
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
++|+|+|++|+||||+++.+..++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998774
No 289
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.28 E-value=0.015 Score=53.74 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=21.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.++|+|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4789999999999999998777655
No 290
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.28 E-value=0.071 Score=53.97 Aligned_cols=38 Identities=16% Similarity=0.010 Sum_probs=30.2
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHhhccc------CceEEEec
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQN 203 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~ 203 (808)
.-.++.|+|.+|.|||+||.+++......- ..++|+..
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 367899999999999999999987654444 55677763
No 291
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.28 E-value=0.072 Score=57.49 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=28.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc--CceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF--EGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~ 202 (808)
-.+++++|+.|+||||++.+++.+...++ ..+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 56899999999999999999998765444 3445554
No 292
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.27 E-value=0.096 Score=53.35 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=29.4
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEec
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN 203 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 203 (808)
.-.++.|+|.+|+|||+||.+++.....+=..++|+..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 36789999999999999999997654334456777763
No 293
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.27 E-value=0.069 Score=57.98 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=30.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
-.++.|.|.+|+|||||+.+++......-..++|++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 568999999999999999999987766555677776
No 294
>PRK03839 putative kinase; Provisional
Probab=95.26 E-value=0.014 Score=56.76 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.6
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 295
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.25 E-value=0.012 Score=51.66 Aligned_cols=26 Identities=42% Similarity=0.897 Sum_probs=22.0
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
|.|+|.+|+|||+||+.++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 56999999999999999998765543
No 296
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.17 E-value=0.12 Score=50.16 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=60.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhh-------------hhccCH--HHHHHHHHhhHhcCcccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREA-------------EETGGI--KDLQKELLSDVLNDRILR 231 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~-------------~~~~~~--~~l~~~ll~~~~~~~~~~ 231 (808)
-.+++|.|..|.|||||++.++-.... ..+.+++....-. .+...+ ..+.+.+...+.+ ...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~--G~~ 104 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG--GER 104 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH--HHH
Confidence 347999999999999999999874322 2344444321000 000000 0000000000000 001
Q ss_pred cHHHHHHHHccceEEEEEecCCC---HHHHHHHHhccCCCCCCCEEEEEeCchhhhhhcCCCeEEEe
Q 041551 232 DVRSQLNRLARKMVLLVFDDVNN---PRQIESLIGHLDHLASGSRVIITTRDKQVLKNCWAGQIYQM 295 (808)
Q Consensus 232 ~~~~l~~~L~~~~~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 295 (808)
..-.+-..+..++-++++|+... ....+.+...+.....+..||++|.+.+.... .+.++.+
T Consensus 105 qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 105 QRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11123334556778899998753 33333332222211236778999988876643 3455544
No 297
>PRK08233 hypothetical protein; Provisional
Probab=95.14 E-value=0.016 Score=56.43 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=22.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|.+|+||||||+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998653
No 298
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.12 E-value=0.069 Score=63.35 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=49.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHc-cceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLA-RKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~-~~~~ 245 (808)
...+.++|++|+|||++|+.++...... .+.+ +..+....... ..+...-.+....+....+.+.++ ....
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~~~---~i~i-d~se~~~~~~~----~~LiG~~~gyvg~~~~g~L~~~v~~~p~s 559 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALGIE---LLRF-DMSEYMERHTV----SRLIGAPPGYVGFDQGGLLTDAVIKHPHA 559 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCC---cEEe-echhhcccccH----HHHcCCCCCcccccccchHHHHHHhCCCc
Confidence 4578899999999999999999876322 1222 22222222222 222211111000111123333443 3446
Q ss_pred EEEEecCCC--HHHHHHHHhccC
Q 041551 246 LLVFDDVNN--PRQIESLIGHLD 266 (808)
Q Consensus 246 LlVlDdv~~--~~~~~~l~~~l~ 266 (808)
+++||+++. ++.++.++..+.
T Consensus 560 VlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 560 VLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred EEEeccHhhhhHHHHHHHHHHHh
Confidence 999999985 445666666554
No 299
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.18 Score=54.88 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+++++|.+|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999754
No 300
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.10 E-value=1.6 Score=45.93 Aligned_cols=148 Identities=12% Similarity=0.099 Sum_probs=88.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc--------c-cC-ceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR--------H-FE-GSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQ 236 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~--------~-F~-~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l 236 (808)
.++..++|..|.||+++|..+++.+-. . .+ ...++... ....... .+..+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i~vd-----------------~Ir~l 77 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDLSKS-----------------EFLSA 77 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcCCHH-----------------HHHHH
Confidence 566779999999999999999987611 1 11 11222100 0111111 12222
Q ss_pred HHHH-----c-cceEEEEEecCCCH--HHHHHHHhccCCCCCCCEEEEEeCc-hhhhhh-cCCCeEEEecCCChhhHHHH
Q 041551 237 LNRL-----A-RKMVLLVFDDVNNP--RQIESLIGHLDHLASGSRVIITTRD-KQVLKN-CWAGQIYQMKELVYTDAQKL 306 (808)
Q Consensus 237 ~~~L-----~-~~~~LlVlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~L 306 (808)
.+.+ . +.+-++|+|+++.. ...+.++..+...++.+.+|++|.+ ..+... .....++++.+++.++..+.
T Consensus 78 ~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 78 INKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred HHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 2222 1 47778889998754 4467777777776777777765544 444433 23357899999999999887
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHH
Q 041551 307 FSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVL 342 (808)
Q Consensus 307 f~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 342 (808)
+.... . ..+.+..++...+|.--|+..+
T Consensus 158 l~~~~-----~---~~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 158 LLSKN-----K---EKEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHcC-----C---ChhHHHHHHHHcCCHHHHHHHH
Confidence 76531 1 1233556666677644555543
No 301
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.09 E-value=0.1 Score=50.25 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=20.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-.+++|+|..|.|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35799999999999999998863
No 302
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.08 E-value=0.11 Score=62.10 Aligned_cols=136 Identities=10% Similarity=0.142 Sum_probs=68.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
..+++++|++|+||||+|+.++......|-...+ .. ..+...+...- ....+.........+.+ .....-+
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~-~~------~~d~~~i~g~~-~~~~g~~~G~~~~~l~~-~~~~~~v 419 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKATGRKYVRMAL-GG------VRDEAEIRGHR-RTYIGSMPGKLIQKMAK-VGVKNPL 419 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEc-CC------CCCHHHhccch-hccCCCCCcHHHHHHHh-cCCCCCE
Confidence 4579999999999999999999876544422211 11 11111111100 00011111111222222 1223447
Q ss_pred EEEecCCCHHH------HHHHHhccCCC--------------C-CCCEEEEEeCchhhhhhc-CCCeEEEecCCChhhHH
Q 041551 247 LVFDDVNNPRQ------IESLIGHLDHL--------------A-SGSRVIITTRDKQVLKNC-WAGQIYQMKELVYTDAQ 304 (808)
Q Consensus 247 lVlDdv~~~~~------~~~l~~~l~~~--------------~-~gs~IiiTTR~~~v~~~~-~~~~~~~l~~L~~~ea~ 304 (808)
++||.++.... ...+...+... . .+.-+|.|+....+.... .--.++++.+++.+|-.
T Consensus 420 illDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~ 499 (784)
T PRK10787 420 FLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKL 499 (784)
T ss_pred EEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHH
Confidence 88999864321 34444443210 1 233334455443322111 12257889999999988
Q ss_pred HHHHHHh
Q 041551 305 KLFSQYA 311 (808)
Q Consensus 305 ~Lf~~~~ 311 (808)
++..++.
T Consensus 500 ~Ia~~~L 506 (784)
T PRK10787 500 NIAKRHL 506 (784)
T ss_pred HHHHHhh
Confidence 8877766
No 303
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.05 E-value=0.043 Score=50.70 Aligned_cols=100 Identities=23% Similarity=0.259 Sum_probs=52.9
Q ss_pred hhHhhhhHhhhcccCCccceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcC
Q 041551 148 QRWGNTLTEAANLSGFDSHVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLND 227 (808)
Q Consensus 148 ~~~~~~l~~~~~~~g~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~ 227 (808)
++.++.+..++.. -.-|.|+|..|+||+++|+.+++.-... ...|+..- ... .. .+++..
T Consensus 8 ~~l~~~l~~~a~~------~~pvli~GE~GtGK~~~A~~lh~~~~~~--~~~~~~~~--~~~-~~-----~~~l~~---- 67 (138)
T PF14532_consen 8 RRLRRQLERLAKS------SSPVLITGEPGTGKSLLARALHRYSGRA--NGPFIVID--CAS-LP-----AELLEQ---- 67 (138)
T ss_dssp HHHHHHHHHHHCS------SS-EEEECCTTSSHHHHHHCCHHTTTTC--CS-CCCCC--HHC-TC-----HHHHHH----
T ss_pred HHHHHHHHHHhCC------CCcEEEEcCCCCCHHHHHHHHHhhcCcc--CCCeEEec--hhh-Cc-----HHHHHH----
Confidence 3444444555432 2347899999999999999888743221 11222100 000 11 111111
Q ss_pred cccccHHHHHHHHccceEEEEEecCCC--HHHHHHHHhccCC-CCCCCEEEEEeCch
Q 041551 228 RILRDVRSQLNRLARKMVLLVFDDVNN--PRQIESLIGHLDH-LASGSRVIITTRDK 281 (808)
Q Consensus 228 ~~~~~~~~l~~~L~~~~~LlVlDdv~~--~~~~~~l~~~l~~-~~~gs~IiiTTR~~ 281 (808)
-+.--|+|+|++. .+....+...+.. .....|+|.||+..
T Consensus 68 --------------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 68 --------------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --------------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --------------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1344578999875 3334444444431 15678999999865
No 304
>PRK00625 shikimate kinase; Provisional
Probab=95.05 E-value=0.018 Score=55.42 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.3
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.|.|+||+|+||||+|+.++.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 305
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.04 E-value=0.088 Score=50.23 Aligned_cols=125 Identities=19% Similarity=0.243 Sum_probs=61.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCccc-ccHHHHHHHHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRIL-RDVRSQLNRLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-~~~~~l~~~L~~~~~ 245 (808)
-.+++|.|..|.|||||.+.++-... ...+.+++.... .. ........+....-...-... ...-.+-..+...+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~-~~-~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE-VS-FASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE-CC-cCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 34799999999999999999886432 234555554211 00 001111111000000000000 112223344556778
Q ss_pred EEEEecCC---CHHHHHHHHhccCCC-CCCCEEEEEeCchhhhhhcCCCeEEEe
Q 041551 246 LLVFDDVN---NPRQIESLIGHLDHL-ASGSRVIITTRDKQVLKNCWAGQIYQM 295 (808)
Q Consensus 246 LlVlDdv~---~~~~~~~l~~~l~~~-~~gs~IiiTTR~~~v~~~~~~~~~~~l 295 (808)
++++|+.. |....+.+...+... ..|..||++|.+...+... .+.++.+
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 88999864 333333333333211 2366788899887654432 2344443
No 306
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.03 E-value=0.2 Score=52.34 Aligned_cols=36 Identities=17% Similarity=-0.067 Sum_probs=28.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc-cCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~ 202 (808)
-.++.|.|.+|+||||+|.+++.....+ =..++|++
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 5578899999999999999998876444 34566766
No 307
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.03 E-value=0.19 Score=52.99 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=24.8
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccC
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFE 196 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~ 196 (808)
+.|.|.|.+|+||||+|++++.++...|-
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 45889999999999999999998765544
No 308
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.03 E-value=0.23 Score=55.05 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=27.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh--cccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS--RHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~--~~F~~~~~~~ 202 (808)
.++++++|++|+||||++..++.... ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999887665 3334455554
No 309
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.02 E-value=0.06 Score=55.72 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=60.9
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLL 247 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~Ll 247 (808)
.+|.|.|..|.||||++..+.+.+...-..++.+.+..+... .+...+ .+.........+.++..|+..+=.+
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~~~q~------~v~~~~~~~~~~~l~~~lR~~PD~i 153 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PGINQV------QVNEKAGLTFARGLRAILRQDPDII 153 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CCceEE------EeCCcCCcCHHHHHHHHhccCCCEE
Confidence 468999999999999999988766442223444443322111 111000 0001111134456667778888999
Q ss_pred EEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchh
Q 041551 248 VFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQ 282 (808)
Q Consensus 248 VlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~ 282 (808)
+++++.+.+....+.... ..|..++-|....+
T Consensus 154 ~vgEiR~~e~a~~~~~aa---~tGh~v~tTlHa~~ 185 (264)
T cd01129 154 MVGEIRDAETAEIAVQAA---LTGHLVLSTLHTND 185 (264)
T ss_pred EeccCCCHHHHHHHHHHH---HcCCcEEEEeccCC
Confidence 999999998766554442 23544555544443
No 310
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.01 E-value=0.1 Score=50.40 Aligned_cols=115 Identities=18% Similarity=0.108 Sum_probs=63.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHH--h------h--HhcCccc------
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELL--S------D--VLNDRIL------ 230 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll--~------~--~~~~~~~------ 230 (808)
...|.|+|-.|-||||.|...+-+...+=-.+..+.-++... ..+-...++.+- . . ....+..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 456889999999999999998887555433444443332211 122223332210 0 0 0000000
Q ss_pred -ccHHHHHHHHc-cceEEEEEecCCCHHH-----HHHHHhccCCCCCCCEEEEEeCchh
Q 041551 231 -RDVRSQLNRLA-RKMVLLVFDDVNNPRQ-----IESLIGHLDHLASGSRVIITTRDKQ 282 (808)
Q Consensus 231 -~~~~~l~~~L~-~~~~LlVlDdv~~~~~-----~~~l~~~l~~~~~gs~IiiTTR~~~ 282 (808)
+..+..++.+. ++-=|+|||.+...-. .+++...+.....+..||+|-|+..
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 23344455554 4557999999854221 3344444444456778999999874
No 311
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=94.97 E-value=0.9 Score=48.75 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=26.0
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
...+|+|.|.=|+|||++.+.+.+++...
T Consensus 19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 19 DPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 37789999999999999999999987766
No 312
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.94 E-value=0.05 Score=54.15 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=47.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCc--------cc---------
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDR--------IL--------- 230 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~--------~~--------- 230 (808)
.-++|.|.+|+|||+|+..+++.... +..+++..- .....+.++.+++...-.... +.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~--d~~V~~~iG---er~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA--DVVVYALIG---ERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT--TEEEEEEES---ECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccc--cceeeeecc---ccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 35889999999999999999986643 333554421 112344455555533211110 00
Q ss_pred ccHHHHHHHH--ccceEEEEEecCCCH
Q 041551 231 RDVRSQLNRL--ARKMVLLVFDDVNNP 255 (808)
Q Consensus 231 ~~~~~l~~~L--~~~~~LlVlDdv~~~ 255 (808)
...-.+-+++ +++.+|+++||+...
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred ccchhhhHHHhhcCCceeehhhhhHHH
Confidence 0111122333 589999999998543
No 313
>PRK14974 cell division protein FtsY; Provisional
Probab=94.94 E-value=0.093 Score=55.97 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=24.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
..+|+++|++|+||||++..+++.+..+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 6799999999999999999888866544
No 314
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.94 E-value=0.099 Score=52.73 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.3
Q ss_pred EEEeecCCCcHhHHHHHHHHHh
Q 041551 170 IWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~ 191 (808)
|.|.|++|+||||+|+.++.++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999998865
No 315
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.93 E-value=0.084 Score=57.45 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=23.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.++|.++|..|+||||.+..++..+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999988654
No 316
>PRK08356 hypothetical protein; Provisional
Probab=94.93 E-value=0.25 Score=48.65 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=19.1
Q ss_pred eEEEEeecCCCcHhHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVF 188 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~ 188 (808)
.+|+|+|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999984
No 317
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.92 E-value=0.33 Score=49.57 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.6
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
+..|+|+||+|||+||.+++..+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999988654
No 318
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.89 E-value=0.029 Score=55.10 Aligned_cols=28 Identities=39% Similarity=0.443 Sum_probs=25.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
+.+|||.|.+|.||||+|+.++..+...
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 6799999999999999999999987765
No 319
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.88 E-value=0.35 Score=52.44 Aligned_cols=144 Identities=17% Similarity=0.246 Sum_probs=79.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCc--eEEEecchhhhhccCHHHHHHHHHhhHhcCcc-cccHHHHHHHHcc-
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEG--SYFAQNVREAEETGGIKDLQKELLSDVLNDRI-LRDVRSQLNRLAR- 242 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~--~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-~~~~~~l~~~L~~- 242 (808)
...+-|.|-+|.|||.+...++.+....... ++++....-......+..+...++....+... .+..+.+.+...+
T Consensus 175 ~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~ 254 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQS 254 (529)
T ss_pred CcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcc
Confidence 4457799999999999999999876554433 46665332111222233344444333322222 2334555555544
Q ss_pred -ceEEEEEecCCCHHH--HHHHHhc--cCCCCCCCEEEEEeCchhh------hhhc-----CCCeEEEecCCChhhHHHH
Q 041551 243 -KMVLLVFDDVNNPRQ--IESLIGH--LDHLASGSRVIITTRDKQV------LKNC-----WAGQIYQMKELVYTDAQKL 306 (808)
Q Consensus 243 -~~~LlVlDdv~~~~~--~~~l~~~--l~~~~~gs~IiiTTR~~~v------~~~~-----~~~~~~~l~~L~~~ea~~L 306 (808)
..+|+|+|..|.... -..+... +++ -+++|+|+.--...+ +... .....+.-++.+.++-.+.
T Consensus 255 k~~~llVlDEmD~L~tr~~~vLy~lFewp~-lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~I 333 (529)
T KOG2227|consen 255 KFMLLLVLDEMDHLITRSQTVLYTLFEWPK-LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEI 333 (529)
T ss_pred cceEEEEechhhHHhhcccceeeeehhccc-CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHH
Confidence 358999999875321 1111111 122 245665553322211 1111 1235678889999999999
Q ss_pred HHHHh
Q 041551 307 FSQYA 311 (808)
Q Consensus 307 f~~~~ 311 (808)
|..+.
T Consensus 334 l~~rl 338 (529)
T KOG2227|consen 334 LQQRL 338 (529)
T ss_pred HHHHH
Confidence 99987
No 320
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.86 E-value=0.14 Score=49.24 Aligned_cols=123 Identities=20% Similarity=0.331 Sum_probs=61.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHH--------------HHHhhHhcCccccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQK--------------ELLSDVLNDRILRD 232 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~--------------~ll~~~~~~~~~~~ 232 (808)
-.+++|.|..|.|||||.+.++.... ...+.+++.... ... .......+ .+...+.... ...
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~-~~~-~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G-~~~ 103 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD-LRD-LDLESLRKNIAYVPQDPFLFSGTIRENILSGG-QRQ 103 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE-hhh-cCHHHHHhhEEEEcCCchhccchHHHHhhCHH-HHH
Confidence 35789999999999999999987433 234444443211 000 00000000 0000000000 011
Q ss_pred HHHHHHHHccceEEEEEecCC---CHHHHHHHHhccCCCCCCCEEEEEeCchhhhhhcCCCeEEEe
Q 041551 233 VRSQLNRLARKMVLLVFDDVN---NPRQIESLIGHLDHLASGSRVIITTRDKQVLKNCWAGQIYQM 295 (808)
Q Consensus 233 ~~~l~~~L~~~~~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 295 (808)
.-.+...+..++-++++|+-. |....+.+...+.....+..||++|.+.+.... .+.++.+
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 122334456677899999864 233333332222222235678888988876643 4455544
No 321
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.84 E-value=0.18 Score=52.19 Aligned_cols=112 Identities=15% Similarity=0.181 Sum_probs=63.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCc---------ccccHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDR---------ILRDVRSQL 237 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~---------~~~~~~~l~ 237 (808)
.+-++|.|..|.|||||.+.++..+... .+.+++.... ........++.... ..+.... .......+.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~-v~~~d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~~~~ 187 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKK-VGIVDERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAEGMM 187 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEE-eecchhHHHHHHHh-cccccccccccccccccchHHHHHH
Confidence 4678999999999999999999765433 3333432110 00000112222111 1110000 001122233
Q ss_pred HHH-ccceEEEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhhh
Q 041551 238 NRL-ARKMVLLVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQVL 284 (808)
Q Consensus 238 ~~L-~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~ 284 (808)
..+ ...+-++++|.+...+.+..+...+. .|..||+||-+..+.
T Consensus 188 ~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 333 25788999999988887777776653 478899999877653
No 322
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.82 E-value=0.2 Score=48.22 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=25.8
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
++.+.|++|.||||++..++..+...=..++.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5789999999999999999987665522334443
No 323
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.81 E-value=0.14 Score=49.50 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=58.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecc--hhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNV--REAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~--~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~ 244 (808)
-.+++|.|..|.|||||++.++.-.. -..+.+++... ....+... ++. .....-.+...+..++
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~~--------LSg-----Gq~qrv~laral~~~p 90 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYID--------LSG-----GELQRVAIAAALLRNA 90 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccCC--------CCH-----HHHHHHHHHHHHhcCC
Confidence 45799999999999999998886432 22344443321 00011110 000 0011222334455677
Q ss_pred EEEEEecCC---CHHHHHHHHhccCCC--CCCCEEEEEeCchhhhhhcCCCeEEEec
Q 041551 245 VLLVFDDVN---NPRQIESLIGHLDHL--ASGSRVIITTRDKQVLKNCWAGQIYQMK 296 (808)
Q Consensus 245 ~LlVlDdv~---~~~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~~~~~~~~~l~ 296 (808)
-++++|+-. |....+.+...+... ..+..||++|.+....... .+.++.+.
T Consensus 91 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~-~d~i~~l~ 146 (177)
T cd03222 91 TFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYL-SDRIHVFE 146 (177)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHh-CCEEEEEc
Confidence 889999864 333322222222111 1235688888887665442 23444443
No 324
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.81 E-value=0.26 Score=48.23 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=23.2
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+-+.|.||+|+||||-+..+++++-
T Consensus 47 nmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 47 NMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 366788999999999999999998653
No 325
>PRK07667 uridine kinase; Provisional
Probab=94.78 E-value=0.04 Score=54.21 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=24.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
..+|+|.|.+|.||||+|+.+...+...
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4789999999999999999999876543
No 326
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.75 E-value=0.13 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.4
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998764
No 327
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.75 E-value=0.055 Score=56.65 Aligned_cols=36 Identities=19% Similarity=0.092 Sum_probs=27.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc-c-CceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH-F-EGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-F-~~~~~~~ 202 (808)
.++++|+|.+|+||||++..++..+..+ - ..+.++.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 5799999999999999999998866543 1 3344444
No 328
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.75 E-value=0.023 Score=54.77 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
...|.|+|++|+||||+|+.++.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998763
No 329
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.74 E-value=0.026 Score=56.47 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=23.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|+|.|.+|+||||||+.++..+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999876
No 330
>PRK13947 shikimate kinase; Provisional
Probab=94.73 E-value=0.023 Score=54.71 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.1
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
-|.|+|++|+||||+|+.+++++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 3889999999999999999987644
No 331
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.72 E-value=0.11 Score=50.09 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.3
Q ss_pred EEEEeecCCCcHhHHHHHHHHH
Q 041551 169 SIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
.|.|.|.+|.||||+|+.++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999987
No 332
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.70 E-value=0.23 Score=47.55 Aligned_cols=122 Identities=17% Similarity=0.192 Sum_probs=59.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEec---chhhhhccCH--HHHHHHHHhhHhcCccc----ccHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN---VREAEETGGI--KDLQKELLSDVLNDRIL----RDVRSQL 237 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~---~~~~~~~~~~--~~l~~~ll~~~~~~~~~----~~~~~l~ 237 (808)
-.+++|.|..|.|||||++.++..... ..+.+++.. +.-..+...+ ..+.+.+... ..... ...-.+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~--~~~~LS~G~~~rv~la 103 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP--WDDVLSGGEQQRLAFA 103 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhcc--CCCCCCHHHHHHHHHH
Confidence 347899999999999999999874322 123232221 0000111111 1122222110 01111 2222233
Q ss_pred HHHccceEEEEEecCC---CHHHHHHHHhccCCCCCCCEEEEEeCchhhhhhcCCCeEEEe
Q 041551 238 NRLARKMVLLVFDDVN---NPRQIESLIGHLDHLASGSRVIITTRDKQVLKNCWAGQIYQM 295 (808)
Q Consensus 238 ~~L~~~~~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 295 (808)
..+..++-++++|+-. |....+.+...+... +..||++|.+..... ..+.++.+
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh--hCCEEEEE
Confidence 4455677888999764 333333333333222 456888888876543 23455544
No 333
>PRK06696 uridine kinase; Validated
Probab=94.69 E-value=0.038 Score=55.86 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=25.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
..+|+|.|.+|+||||||++++..+...
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 7799999999999999999999877543
No 334
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.65 E-value=0.11 Score=52.66 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=64.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecch--hhhhccCHHHHHHHHHhhHhcCccc-----------ccH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVR--EAEETGGIKDLQKELLSDVLNDRIL-----------RDV 233 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~--~~~~~~~~~~l~~~ll~~~~~~~~~-----------~~~ 233 (808)
-.+++|+|-.|.|||||++.+..-.... .+.+++..-. ..+ .....+...+++....-.++. +..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 4579999999999999999998744333 3334433210 001 111222233344333211111 222
Q ss_pred -HHHHHHHccceEEEEEecCCC------HHHHHHHHhccCCCCCCCEEEEEeCchhhhhhc
Q 041551 234 -RSQLNRLARKMVLLVFDDVNN------PRQIESLIGHLDHLASGSRVIITTRDKQVLKNC 287 (808)
Q Consensus 234 -~~l~~~L~~~~~LlVlDdv~~------~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~ 287 (808)
-.+.+.|.-++-++|.|..-+ ..++-.++..+.. ..|-..+..|-+-.++..+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 234455778899999997543 2333333333321 3456678888887776654
No 335
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.64 E-value=0.042 Score=53.17 Aligned_cols=35 Identities=31% Similarity=0.444 Sum_probs=26.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFA 201 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 201 (808)
..+|+|.|++|.||||+|+.++......-....++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 45899999999999999999998765432223444
No 336
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.63 E-value=0.038 Score=53.59 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=22.7
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
+|+|.|.+|.||||||+.+...+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999876543
No 337
>PRK14528 adenylate kinase; Provisional
Probab=94.62 E-value=0.16 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.0
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
+.|.|.|.+|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998765
No 338
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.61 E-value=0.054 Score=58.50 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=60.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccC---ceEEEecchhhhhccCHHHHHHHHHhhHh-cCcccccHHHHHHHHcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFE---GSYFAQNVREAEETGGIKDLQKELLSDVL-NDRILRDVRSQLNRLAR 242 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~---~~~~~~~~~~~~~~~~~~~l~~~ll~~~~-~~~~~~~~~~l~~~L~~ 242 (808)
-..|.|+|..|.||||+++.+.+.+....+ .++.+.+-.+... ...... .....+.. +.........++..|+.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~-~~~~~~-~~~v~Q~~v~~~~~~~~~~l~~aLR~ 211 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVY-DEIETI-SASVCQSEIPRHLNNFAAGVRNALRR 211 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEec-cccccc-cceeeeeeccccccCHHHHHHHHhcc
Confidence 457999999999999999999887654433 2333332211110 010000 00001100 11111334566777888
Q ss_pred ceEEEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeC
Q 041551 243 KMVLLVFDDVNNPRQIESLIGHLDHLASGSRVIITTR 279 (808)
Q Consensus 243 ~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR 279 (808)
.+-.+++..+.+.+..+...... ..|..++-|--
T Consensus 212 ~Pd~i~vGEiRd~et~~~al~aa---~tGh~v~tTlH 245 (358)
T TIGR02524 212 KPHAILVGEARDAETISAALEAA---LTGHPVYTTLH 245 (358)
T ss_pred CCCEEeeeeeCCHHHHHHHHHHH---HcCCcEEEeec
Confidence 99999999999998876544432 34554444433
No 339
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.59 E-value=0.027 Score=56.14 Aligned_cols=26 Identities=38% Similarity=0.508 Sum_probs=23.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|+|.+|+||||||+.++....
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999999997654
No 340
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.59 E-value=0.029 Score=54.30 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.3
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
++|.+.|++|.||||+|+++..+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999988653
No 341
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.48 E-value=0.048 Score=51.08 Aligned_cols=35 Identities=34% Similarity=0.480 Sum_probs=28.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFA 201 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 201 (808)
..+|.+.|.+|.||||||.+++.++..+-..+..+
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 56899999999999999999999877665544444
No 342
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.47 E-value=0.39 Score=58.40 Aligned_cols=225 Identities=17% Similarity=0.169 Sum_probs=106.6
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhccc----CceEEEecchhhhhccCHH--HHHHHHHhhHhcCccc-ccHHHHHHHHc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHF----EGSYFAQNVREAEETGGIK--DLQKELLSDVLNDRIL-RDVRSQLNRLA 241 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F----~~~~~~~~~~~~~~~~~~~--~l~~~ll~~~~~~~~~-~~~~~l~~~L~ 241 (808)
-+.|+|-+|.||||+.+.++-....+. +..+++..-.......... .+..-+.......... +......+.+.
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~e~l~ 303 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGIAKQLIEAHQELLK 303 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCCcchhhHHHHHHHh
Confidence 588999999999999999887433322 2223332110000001111 1122111111111111 22333356788
Q ss_pred cceEEEEEecCCCHHH------HHHHHhccCCCCCCCEEEEEeCchhhhhhcCCCeEEEecCCChhhHHHHHH-------
Q 041551 242 RKMVLLVFDDVNNPRQ------IESLIGHLDHLASGSRVIITTRDKQVLKNCWAGQIYQMKELVYTDAQKLFS------- 308 (808)
Q Consensus 242 ~~~~LlVlDdv~~~~~------~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~------- 308 (808)
..++|+.+|.++.... ...+-..+++ -+.+++|+|+|....-........+++..+.++.-.+...
T Consensus 304 ~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~-~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~~~~~~ 382 (824)
T COG5635 304 TGKLLLLLDGLDELEPKNQRALIREINKFLQE-YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQWLDAF 382 (824)
T ss_pred ccchhhHhhccchhhhhhHHHHHHHHHHHhhh-ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHHHHHHH
Confidence 9999999999875321 3333333333 3578999999877554433334455666666554442222
Q ss_pred -HHhhcCCCCC--chHHHH---HHHHHHHhcCchhhHHHHhhhhc------CCCHHHHHHHHhhhhcCcchhHHHHHHHh
Q 041551 309 -QYAFRGGHLD--SSYTEL---TDKAIKYAQGVPLALKVLGCYLC------GRSKEEWESAMRKLEIIPHVEIQEVLKIS 376 (808)
Q Consensus 309 -~~~~~~~~~~--~~~~~~---~~~i~~~~~glPLal~~~~~~L~------~~~~~~w~~~l~~l~~~~~~~i~~~l~~s 376 (808)
...++..... .....+ ..+-++.....|++|.+.+..-. ....+-++.+++.+-...+..-...+...
T Consensus 383 ~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~~~~~~~~~~ 462 (824)
T COG5635 383 IEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDETRGIKWSKT 462 (824)
T ss_pred HHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccchhhhhcchhh
Confidence 1111111111 011111 12233344777988888774332 22445566665554332221111123344
Q ss_pred hcCCc-HHHHH-HHhhhhhc
Q 041551 377 YDSLD-DSQKN-IFLDIACF 394 (808)
Q Consensus 377 y~~L~-~~~k~-~fl~la~f 394 (808)
|+.+. +.... ++..+|.+
T Consensus 463 ~~~~~~~~~~~~l~~~la~~ 482 (824)
T COG5635 463 YAKLTTDQQDKWLLQLLAAL 482 (824)
T ss_pred hcccchHHHHHHHHHHHHHH
Confidence 55443 23333 55555543
No 343
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.46 E-value=0.037 Score=54.11 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=51.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhc---CcccccHHHHHHHHccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLN---DRILRDVRSQLNRLARK 243 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~---~~~~~~~~~l~~~L~~~ 243 (808)
-..++|.|..|.||||+++.+...+... ...+.+.+..+...... ... ++...... .......+.++..++..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~l~~~lR~~ 100 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHP--NWV-RLVTRPGNVEGSGEVTMADLLRSALRMR 100 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCC--CEE-EEEEecCCCCCCCccCHHHHHHHHhccC
Confidence 3468999999999999999988765432 23333332222111000 000 00000000 00113344555667777
Q ss_pred eEEEEEecCCCHHHHHHHHh
Q 041551 244 MVLLVFDDVNNPRQIESLIG 263 (808)
Q Consensus 244 ~~LlVlDdv~~~~~~~~l~~ 263 (808)
+=.++++.+.+.+.++.+..
T Consensus 101 pd~i~igEir~~ea~~~~~a 120 (186)
T cd01130 101 PDRIIVGEVRGGEALDLLQA 120 (186)
T ss_pred CCEEEEEccCcHHHHHHHHH
Confidence 88899999999887665443
No 344
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.45 E-value=0.031 Score=54.68 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.++|+|.|++|+||||+|+.++.++
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998764
No 345
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.43 E-value=0.17 Score=49.67 Aligned_cols=27 Identities=30% Similarity=0.206 Sum_probs=22.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
-.++.|.|.+|+||||++.+++..+..
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~ 58 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALAT 58 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 347889999999999999999986543
No 346
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.42 E-value=0.24 Score=47.68 Aligned_cols=121 Identities=15% Similarity=0.210 Sum_probs=60.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhh-------------hhccCH---HHHHHHHHhhHhcCccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREA-------------EETGGI---KDLQKELLSDVLNDRIL 230 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~-------------~~~~~~---~~l~~~ll~~~~~~~~~ 230 (808)
-.+++|.|..|.|||||++.++.... ...+.+++....-. .+...+ ..+.+.+. ... ..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~---LS~-G~ 100 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK---LSG-GM 100 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh---cCH-HH
Confidence 34799999999999999999886432 22344444321000 000000 00011100 000 00
Q ss_pred ccHHHHHHHHccceEEEEEecCCC---HHH---HHHHHhccCCCCCCCEEEEEeCchhhhhhcCCCeEEEe
Q 041551 231 RDVRSQLNRLARKMVLLVFDDVNN---PRQ---IESLIGHLDHLASGSRVIITTRDKQVLKNCWAGQIYQM 295 (808)
Q Consensus 231 ~~~~~l~~~L~~~~~LlVlDdv~~---~~~---~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 295 (808)
...-.+...+..++-++++|+... ... +..++..+. ..|..||++|.+....... .+.++.+
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 111223444567888999998642 222 333333322 2367789999888765532 2344444
No 347
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.42 E-value=0.6 Score=53.18 Aligned_cols=173 Identities=12% Similarity=0.168 Sum_probs=96.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh-----cccCceEE--EecchhhhhccCHHHHHHHHHhhHhcCccc--ccHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS-----RHFEGSYF--AQNVREAEETGGIKDLQKELLSDVLNDRIL--RDVRSQL 237 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~-----~~F~~~~~--~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~--~~~~~l~ 237 (808)
-..+-|.|.+|.|||..+..|.+.+. +.-+.-.| +..++ -....++...++..+.+.... ..++.+.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~----l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~ 497 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLR----LASPREIYEKIWEALSGERVTWDAALEALN 497 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEccee----ecCHHHHHHHHHHhcccCcccHHHHHHHHH
Confidence 44788999999999999999998543 22222233 33222 234667777777777665543 5566666
Q ss_pred HHHc-----cceEEEEEecCCCHHH--HHHHHhccCCC-CCCCEEEEEeCch--hhhhhc--------CCCeEEEecCCC
Q 041551 238 NRLA-----RKMVLLVFDDVNNPRQ--IESLIGHLDHL-ASGSRVIITTRDK--QVLKNC--------WAGQIYQMKELV 299 (808)
Q Consensus 238 ~~L~-----~~~~LlVlDdv~~~~~--~~~l~~~l~~~-~~gs~IiiTTR~~--~v~~~~--------~~~~~~~l~~L~ 299 (808)
.+.. .+..++++|+++..-. -+-+-..+.|. .++||++|-+=.. +....+ -....+...+.+
T Consensus 498 ~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYt 577 (767)
T KOG1514|consen 498 FRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYT 577 (767)
T ss_pred HhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCC
Confidence 6664 4568999999864321 12233334443 4678876654222 111111 012345666777
Q ss_pred hhhHHHHHHHHhhcCCC-CCchHHHHHHHHHHHhcCchhhHHHHh
Q 041551 300 YTDAQKLFSQYAFRGGH-LDSSYTELTDKAIKYAQGVPLALKVLG 343 (808)
Q Consensus 300 ~~ea~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~glPLal~~~~ 343 (808)
.++-.+....+..+... .+...+-+|++|+.-.|..-.|+.+.-
T Consensus 578 h~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~ 622 (767)
T KOG1514|consen 578 HEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICR 622 (767)
T ss_pred HHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHH
Confidence 77777777766643322 222333344555554555555544443
No 348
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.41 E-value=0.032 Score=54.07 Aligned_cols=26 Identities=35% Similarity=0.509 Sum_probs=23.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998765
No 349
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.52 Score=54.12 Aligned_cols=119 Identities=22% Similarity=0.302 Sum_probs=65.4
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceEEE
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMVLL 247 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~Ll 247 (808)
=|.++|++|.|||-||++|+-+.+= -|++.- +. +++... .++. .+.++.+.++- .-+++.|
T Consensus 707 GILLYGPPGTGKTLlAKAVATEcsL-----~FlSVK-------GP-ELLNMY----VGqS-E~NVR~VFerAR~A~PCVI 768 (953)
T KOG0736|consen 707 GILLYGPPGTGKTLLAKAVATECSL-----NFLSVK-------GP-ELLNMY----VGQS-EENVREVFERARSAAPCVI 768 (953)
T ss_pred eeEEECCCCCchHHHHHHHHhhcee-----eEEeec-------CH-HHHHHH----hcch-HHHHHHHHHHhhccCCeEE
Confidence 4789999999999999999975432 233321 11 122222 2222 13344444444 3588999
Q ss_pred EEecCCCHH---------------HHHHHHhccCCC----CCCCEEEEEeCchhhhhhc-----CCCeEEEecCCChhhH
Q 041551 248 VFDDVNNPR---------------QIESLIGHLDHL----ASGSRVIITTRDKQVLKNC-----WAGQIYQMKELVYTDA 303 (808)
Q Consensus 248 VlDdv~~~~---------------~~~~l~~~l~~~----~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea 303 (808)
.+|.+++.. .+-+++..++.. ..+--||=.|..+++.... ..+..+.|++=+.+|+
T Consensus 769 FFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~es 848 (953)
T KOG0736|consen 769 FFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAES 848 (953)
T ss_pred EeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHH
Confidence 999997621 233444444322 2233345556556554321 2345667776666665
Q ss_pred HH
Q 041551 304 QK 305 (808)
Q Consensus 304 ~~ 305 (808)
..
T Consensus 849 k~ 850 (953)
T KOG0736|consen 849 KL 850 (953)
T ss_pred HH
Confidence 53
No 350
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.54 Score=46.46 Aligned_cols=124 Identities=15% Similarity=0.249 Sum_probs=69.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH----cc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL----AR 242 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L----~~ 242 (808)
.+=+.++|++|.|||-||+++|+. ..+.|+...+ .++.+..+. +..+.+++.+ ..
T Consensus 181 PKGvlLygppgtGktLlaraVahh-----t~c~firvsg--------selvqk~ig--------egsrmvrelfvmareh 239 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKTLLARAVAHH-----TDCTFIRVSG--------SELVQKYIG--------EGSRMVRELFVMAREH 239 (404)
T ss_pred CcceEEecCCCCchhHHHHHHHhh-----cceEEEEech--------HHHHHHHhh--------hhHHHHHHHHHHHHhc
Confidence 566889999999999999999974 3344554221 122222221 1223333322 34
Q ss_pred ceEEEEEecCCCH-------------HH---HHHHHhccCCC--CCCCEEEEEeCchhhhhhc-----CCCeEEEecCCC
Q 041551 243 KMVLLVFDDVNNP-------------RQ---IESLIGHLDHL--ASGSRVIITTRDKQVLKNC-----WAGQIYQMKELV 299 (808)
Q Consensus 243 ~~~LlVlDdv~~~-------------~~---~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~ 299 (808)
-+..+..|.+++. +. .-+++..+..+ ..+-+||..|..-+++... ..+.-++.++-+
T Consensus 240 apsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~ 319 (404)
T KOG0728|consen 240 APSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 319 (404)
T ss_pred CCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCC
Confidence 6788889988651 11 22333444433 3567888877666654331 123455666666
Q ss_pred hhhHHHHHHHHh
Q 041551 300 YTDAQKLFSQYA 311 (808)
Q Consensus 300 ~~ea~~Lf~~~~ 311 (808)
.+.-.+++.-+.
T Consensus 320 e~ar~~ilkihs 331 (404)
T KOG0728|consen 320 EEARLDILKIHS 331 (404)
T ss_pred HHHHHHHHHHhh
Confidence 666566665444
No 351
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.40 E-value=1.1 Score=47.45 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=33.7
Q ss_pred EEEecCCChhhHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhcCchhhH
Q 041551 292 IYQMKELVYTDAQKLFSQYAFRGGHLD-SSYTELTDKAIKYAQGVPLAL 339 (808)
Q Consensus 292 ~~~l~~L~~~ea~~Lf~~~~~~~~~~~-~~~~~~~~~i~~~~~glPLal 339 (808)
.++|++++.+|+..++.-+.-.+--.. ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999987773322222 344455666666679999654
No 352
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.39 E-value=0.096 Score=55.33 Aligned_cols=37 Identities=24% Similarity=0.175 Sum_probs=30.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEec
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN 203 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 203 (808)
-+++-|+|.+|+||||||.+++......-..++|++.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~ 91 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 91 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcc
Confidence 6789999999999999999988876655566778763
No 353
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.38 E-value=0.059 Score=59.16 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
++.|+|+|..|.||||||+++++.+
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 7889999999999999999998754
No 354
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.37 E-value=0.28 Score=53.87 Aligned_cols=35 Identities=23% Similarity=0.156 Sum_probs=26.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFA 201 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 201 (808)
..+|.++|.+|+||||+|..++..++.+-..+..+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 67999999999999999999988665442233333
No 355
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.37 E-value=0.13 Score=56.87 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=24.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
..+|.++|.+|+||||+|..++..+..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 6789999999999999999999876654
No 356
>PRK14531 adenylate kinase; Provisional
Probab=94.31 E-value=0.21 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.8
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.|.|.|++|.||||+|+.++.++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998865
No 357
>PRK06547 hypothetical protein; Provisional
Probab=94.31 E-value=0.038 Score=53.10 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=22.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|+|.|.+|.||||+|+.++...
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999998863
No 358
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.30 E-value=0.12 Score=55.84 Aligned_cols=103 Identities=19% Similarity=0.295 Sum_probs=59.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+=+-|||..|.|||.|+-.+|+.+...-..++-+. .-+.++.+.+-... .....+..+.+.+.++..|
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------~Fm~~vh~~l~~~~---~~~~~l~~va~~l~~~~~l 130 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------EFMLDVHSRLHQLR---GQDDPLPQVADELAKESRL 130 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------HHHHHHHHHHHHHh---CCCccHHHHHHHHHhcCCE
Confidence 566889999999999999999985432111111111 11222222222211 1224566677778888889
Q ss_pred EEEecC--CCH---HHHHHHHhccCCCCCCCEEEEEeCchhh
Q 041551 247 LVFDDV--NNP---RQIESLIGHLDHLASGSRVIITTRDKQV 283 (808)
Q Consensus 247 lVlDdv--~~~---~~~~~l~~~l~~~~~gs~IiiTTR~~~v 283 (808)
|.+|.+ .|. --+..+...+- ..|. |||+|.|...
T Consensus 131 LcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~~P 169 (362)
T PF03969_consen 131 LCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNRPP 169 (362)
T ss_pred EEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCCCh
Confidence 999974 343 33555555543 3455 6666666543
No 359
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.27 E-value=0.36 Score=47.66 Aligned_cols=23 Identities=26% Similarity=0.172 Sum_probs=20.7
Q ss_pred eEEEEeecCCCcHhHHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
++++|.|..|.|||||.+.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 68999999999999999998753
No 360
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.27 E-value=0.14 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEeecCCCcHhHHHHHHHHHh
Q 041551 170 IWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~ 191 (808)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998754
No 361
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.25 E-value=0.27 Score=50.37 Aligned_cols=24 Identities=38% Similarity=0.371 Sum_probs=21.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
-.+++|+|..|+|||||++.++..
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998864
No 362
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.24 E-value=1.4 Score=47.35 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.9
Q ss_pred EEEEeecCCCcHhHHHHHHHH
Q 041551 169 SIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-|.|+|-.|+||+++|+.+.+
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999998875
No 363
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.22 E-value=0.17 Score=47.96 Aligned_cols=123 Identities=21% Similarity=0.249 Sum_probs=62.6
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcc-cccHHHHHHHHccceEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRI-LRDVRSQLNRLARKMVL 246 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-~~~~~~l~~~L~~~~~L 246 (808)
.+++|.|..|.|||||++.++..+. ...+.+++....- . ..........+. -+..... ....-.+...+...+-+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~-~-~~~~~~~~~~i~-~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDI-A-KLPLEELRRRIG-YVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEc-c-cCCHHHHHhceE-EEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 5799999999999999999987543 2455555542110 0 000111111100 0000000 11122234445566789
Q ss_pred EEEecCC---CHHHHHHHHhccCCC-CCCCEEEEEeCchhhhhhcCCCeEEEe
Q 041551 247 LVFDDVN---NPRQIESLIGHLDHL-ASGSRVIITTRDKQVLKNCWAGQIYQM 295 (808)
Q Consensus 247 lVlDdv~---~~~~~~~l~~~l~~~-~~gs~IiiTTR~~~v~~~~~~~~~~~l 295 (808)
+++|+.. |......+...+... ..+..++++|.+....... .+.++.+
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 9999875 333333332222111 2256788888887766553 2345444
No 364
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.22 E-value=0.43 Score=51.25 Aligned_cols=36 Identities=22% Similarity=0.141 Sum_probs=28.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.++++++|+.|+||||++..++.....+-..+.++.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 679999999999999999999886644434455555
No 365
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.22 E-value=0.17 Score=48.21 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=34.6
Q ss_pred HHHHHHccceEEEEEec----CCCHHHHHHHHhccCCCCCCCEEEEEeCchhhhhhcC
Q 041551 235 SQLNRLARKMVLLVFDD----VNNPRQIESLIGHLDHLASGSRVIITTRDKQVLKNCW 288 (808)
Q Consensus 235 ~l~~~L~~~~~LlVlDd----v~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~ 288 (808)
.+.+.+-+++-+|+-|. ++..-.|+-+.-.-.-+..|..||++|-+.++...+.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 34455667888999995 4444444432211112356999999999999877753
No 366
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.22 E-value=10 Score=41.42 Aligned_cols=108 Identities=15% Similarity=0.074 Sum_probs=67.4
Q ss_pred ceEEEEEecCCCH--------HHHHHHHhccCCCCCCCEEEEEeCchhhhhh----c--CCCeEEEecCCChhhHHHHHH
Q 041551 243 KMVLLVFDDVNNP--------RQIESLIGHLDHLASGSRVIITTRDKQVLKN----C--WAGQIYQMKELVYTDAQKLFS 308 (808)
Q Consensus 243 ~~~LlVlDdv~~~--------~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~----~--~~~~~~~l~~L~~~ea~~Lf~ 308 (808)
.+=++|+||.... +.+.++...+-. .+=.+||++|-+...... + .+...+.+...+.+.|.++..
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 3568999998431 223333333332 345678888877654332 2 234567889999999999999
Q ss_pred HHhhcCCCC------------------CchHHHHHHHHHHHhcCchhhHHHHhhhhc-CCCH
Q 041551 309 QYAFRGGHL------------------DSSYTELTDKAIKYAQGVPLALKVLGCYLC-GRSK 351 (808)
Q Consensus 309 ~~~~~~~~~------------------~~~~~~~~~~i~~~~~glPLal~~~~~~L~-~~~~ 351 (808)
.+.-..... ...........++.+||-=.-|+.++..++ |.++
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 887432110 012344456677888888888888888886 4443
No 367
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.21 E-value=0.06 Score=57.34 Aligned_cols=32 Identities=16% Similarity=0.402 Sum_probs=26.1
Q ss_pred CCccceeEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 162 GFDSHVISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 162 g~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
|...+-++++++|++|.||||||+.+++.+..
T Consensus 73 g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 73 GLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 33444688999999999999999999986543
No 368
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.20 E-value=0.19 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
-.+++|.|..|.|||||.+.++-.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999988764
No 369
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.19 E-value=0.034 Score=53.37 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=27.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh-cccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS-RHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~-~~F~~~~~~~ 202 (808)
..++.+.|+.|+|||.||+.++..+. ......+-+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 45688999999999999999999776 4544444444
No 370
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.15 E-value=0.064 Score=53.08 Aligned_cols=37 Identities=24% Similarity=0.488 Sum_probs=28.5
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
+..+|+|+|++|.||||||+.+...+...-...+++.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 3678999999999999999999987654333345553
No 371
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.15 E-value=0.089 Score=53.72 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=31.1
Q ss_pred hhhhHhhhcccCCccceeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 151 GNTLTEAANLSGFDSHVISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 151 ~~~l~~~~~~~g~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
.+.+.......|. ..+|||.|.||+|||||.-++..++..+
T Consensus 38 ~~ll~~l~p~tG~---a~viGITG~PGaGKSTli~~L~~~l~~~ 78 (323)
T COG1703 38 RELLRALYPRTGN---AHVIGITGVPGAGKSTLIEALGRELRER 78 (323)
T ss_pred HHHHHHHhhcCCC---CcEEEecCCCCCchHHHHHHHHHHHHHC
Confidence 3444455444554 7899999999999999999998876554
No 372
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.14 E-value=0.11 Score=54.84 Aligned_cols=37 Identities=24% Similarity=0.146 Sum_probs=31.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEec
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN 203 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 203 (808)
-+++-|+|.+|+||||||.+++......-..++|++.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 6788899999999999999998876666567788874
No 373
>PRK06217 hypothetical protein; Validated
Probab=94.12 E-value=0.036 Score=54.07 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.1
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.|.|.|.+|.||||+|+++..+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999865
No 374
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.11 E-value=0.22 Score=48.07 Aligned_cols=121 Identities=21% Similarity=0.270 Sum_probs=60.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHH--------------HHhhHhcCccccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKE--------------LLSDVLNDRILRD 232 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~--------------ll~~~~~~~~~~~ 232 (808)
-.+++|.|..|.|||||.+.++-... ...+.+++.... .. ........+. +...+..... ..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~-~~-~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~-~q 103 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGAD-IS-QWDPNELGDHVGYLPQDDELFSGSIAENILSGGQ-RQ 103 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEE-cc-cCCHHHHHhheEEECCCCccccCcHHHHCcCHHH-HH
Confidence 34799999999999999999986432 223444443210 00 0000111110 0000000000 11
Q ss_pred HHHHHHHHccceEEEEEecCC---CHHH---HHHHHhccCCCCCCCEEEEEeCchhhhhhcCCCeEEEe
Q 041551 233 VRSQLNRLARKMVLLVFDDVN---NPRQ---IESLIGHLDHLASGSRVIITTRDKQVLKNCWAGQIYQM 295 (808)
Q Consensus 233 ~~~l~~~L~~~~~LlVlDdv~---~~~~---~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 295 (808)
.-.+...+..++-++++|+.. |... +..++..+. ..|..||++|.+.+... . .+.++.+
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l 168 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVL 168 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEE
Confidence 122333455667788999864 3332 333333322 23667888888887654 2 4455554
No 375
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.11 E-value=0.035 Score=53.91 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=21.0
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
+|+|.|.+|.||||+|+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 376
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=94.10 E-value=0.28 Score=48.03 Aligned_cols=21 Identities=19% Similarity=0.329 Sum_probs=18.9
Q ss_pred EEEEeecCCCcHhHHHHHHHH
Q 041551 169 SIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-|+|+|.+|+|||+|...+..
T Consensus 8 KivviG~~~vGKTsll~~~~~ 28 (189)
T cd04121 8 KFLLVGDSDVGKGEILASLQD 28 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 467999999999999999886
No 377
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.10 E-value=0.07 Score=49.33 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=26.3
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhc-ccCceEEEe
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISR-HFEGSYFAQ 202 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~ 202 (808)
++|.|+|..|+|||||++.+.+.... .+...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 47999999999999999999998764 444444444
No 378
>PRK05973 replicative DNA helicase; Provisional
Probab=94.09 E-value=0.13 Score=51.88 Aligned_cols=58 Identities=17% Similarity=0.080 Sum_probs=38.0
Q ss_pred cchhhHhhhhHhhhc------ccCCccceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 145 EKMQRWGNTLTEAAN------LSGFDSHVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 145 ~~~~~~~~~l~~~~~------~~g~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
+-...|...-..++. +.|--.+-.++.|.|.+|+|||++|.+++.....+-..++|++
T Consensus 36 ~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 36 EGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred hccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 445667644333332 2222233668999999999999999999886544445566665
No 379
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.09 E-value=0.25 Score=56.06 Aligned_cols=55 Identities=22% Similarity=0.388 Sum_probs=34.6
Q ss_pred HccceEEEEEecCC---CHHHHHHHHhccCCCCCCCEEEEEeCchhhhhhcCCCeEEEecC
Q 041551 240 LARKMVLLVFDDVN---NPRQIESLIGHLDHLASGSRVIITTRDKQVLKNCWAGQIYQMKE 297 (808)
Q Consensus 240 L~~~~~LlVlDdv~---~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~ 297 (808)
+-.++=+||||.-- |.+..+.+...+..+ +| .||+.|-++....... ..++.+++
T Consensus 454 l~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 454 LLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred hccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 45678899999653 233344444444322 24 4899999998877753 56666664
No 380
>PRK13949 shikimate kinase; Provisional
Probab=94.08 E-value=0.039 Score=52.96 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.6
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
-|.|+|++|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998764
No 381
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.08 E-value=0.21 Score=50.35 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=28.6
Q ss_pred hhhHhhhcccCCccceeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 152 NTLTEAANLSGFDSHVISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 152 ~~l~~~~~~~g~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
+.+..+....|. ..+|+|.|.||.|||||..++...+..+
T Consensus 17 ~ll~~l~~~~g~---a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 17 ELLKRLYPHTGR---AHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHGGGTT----SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCC---ceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 334444443443 6799999999999999999999876654
No 382
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.08 E-value=0.038 Score=51.53 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=21.0
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
+|.|.|.+|.||||+|+.++.+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999865
No 383
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.07 E-value=0.17 Score=56.59 Aligned_cols=36 Identities=25% Similarity=0.246 Sum_probs=29.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
-.++.|.|.+|+|||||+.+++.....+-..++|++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 568999999999999999999887655434577776
No 384
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.04 E-value=0.24 Score=51.89 Aligned_cols=113 Identities=15% Similarity=0.283 Sum_probs=58.7
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHH-H--hhcccCceEEEecchhhhhc----cC-----HHHHHHHHHhh---HhcCcc-
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFN-K--ISRHFEGSYFAQNVREAEET----GG-----IKDLQKELLSD---VLNDRI- 229 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~-~--~~~~F~~~~~~~~~~~~~~~----~~-----~~~l~~~ll~~---~~~~~~- 229 (808)
.+..|.+.|.+|.|||-||.+..- + .+..|...+-....-...+. ++ +....+.+... +...+.
T Consensus 244 dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~ 323 (436)
T COG1875 244 DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEP 323 (436)
T ss_pred CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHHHHHhHHHHHhccccc
Confidence 388999999999999999876553 2 24445544433221111111 11 11111222111 111110
Q ss_pred -cccHHHHH----------HHHcc---ceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCch
Q 041551 230 -LRDVRSQL----------NRLAR---KMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDK 281 (808)
Q Consensus 230 -~~~~~~l~----------~~L~~---~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~ 281 (808)
...++.+. .++++ .+-++|+|.+.+ +.++..+... .|.||||+.|---.
T Consensus 324 ~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR---~G~GsKIVl~gd~a 388 (436)
T COG1875 324 GDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTR---AGEGSKIVLTGDPA 388 (436)
T ss_pred chHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHh---ccCCCEEEEcCCHH
Confidence 11222221 11233 346899999986 4556666544 58999999886543
No 385
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.03 E-value=0.042 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEeecCCCcHhHHHHHHHHHh
Q 041551 170 IWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~ 191 (808)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999875
No 386
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.01 E-value=0.3 Score=52.48 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=24.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh--cccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS--RHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~--~~F~~~~~~~ 202 (808)
-++|.++|+.|+||||-...++.++. ..=..+.+++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 68999999999999965555554433 3334455554
No 387
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.28 Score=49.63 Aligned_cols=29 Identities=38% Similarity=0.532 Sum_probs=24.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
.+=|.++|.+|.|||-||++|+|+.+..|
T Consensus 219 PKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 219 PKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred CCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 55577999999999999999999876655
No 388
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.98 E-value=0.37 Score=47.34 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-.+++|.|..|.|||||++.++-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999885
No 389
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.96 E-value=0.045 Score=50.50 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.1
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
+|.|.|.+|.||||+|+.+++.+.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 6899999999999999999987643
No 390
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.95 E-value=0.039 Score=55.44 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=21.8
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
+|+|.|..|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998765
No 391
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.93 E-value=0.04 Score=51.74 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.9
Q ss_pred EEEEeecCCCcHhHHHHHHHHH
Q 041551 169 SIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
++.|+|++|+||||+|+.+..+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999876
No 392
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.91 E-value=0.44 Score=46.43 Aligned_cols=26 Identities=42% Similarity=0.777 Sum_probs=23.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|.+|.||||+|+.+.....
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998764
No 393
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.87 E-value=0.077 Score=55.98 Aligned_cols=88 Identities=20% Similarity=0.266 Sum_probs=52.9
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhccc--CceEEEecchhhhhc-cCHHHHHHHHHhhHhcCcccccHHHHHHHHccce
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHF--EGSYFAQNVREAEET-GGIKDLQKELLSDVLNDRILRDVRSQLNRLARKM 244 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~~~~~~~~~-~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~ 244 (808)
+.+.|.|..|.||||+++++.+.+.... ..++-+.+..+.... .+...+ ..........+.++..|+..+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~-------~~~~~~~~~~~~l~~aLR~~p 205 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQL-------RTSDDAISMTRLLKATLRLRP 205 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEE-------EecCCCCCHHHHHHHHhcCCC
Confidence 3578999999999999999998775532 233334433332110 000000 000111133456667788888
Q ss_pred EEEEEecCCCHHHHHHHH
Q 041551 245 VLLVFDDVNNPRQIESLI 262 (808)
Q Consensus 245 ~LlVlDdv~~~~~~~~l~ 262 (808)
=-+|+..+.+.+.++.+.
T Consensus 206 D~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 206 DRIIVGEVRGGEALDLLK 223 (299)
T ss_pred CEEEEeccCCHHHHHHHH
Confidence 889999999988766543
No 394
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.87 E-value=0.028 Score=33.43 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=11.4
Q ss_pred ccEEEecccCCeecCccccc
Q 041551 627 MWRLELTKVGIKELPSSIEC 646 (808)
Q Consensus 627 L~~L~L~~n~i~~lp~~~~~ 646 (808)
|++|+|++|.|+.+|++|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 45556666666666665443
No 395
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.86 E-value=0.04 Score=54.56 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.9
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 396
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.85 E-value=0.43 Score=46.87 Aligned_cols=22 Identities=36% Similarity=0.444 Sum_probs=20.0
Q ss_pred EEEeecCCCcHhHHHHHHHHHh
Q 041551 170 IWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~ 191 (808)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998764
No 397
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.83 E-value=0.49 Score=60.13 Aligned_cols=25 Identities=16% Similarity=0.229 Sum_probs=22.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.+=|.++|++|.|||.||+++|...
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc
Confidence 5568899999999999999999853
No 398
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.41 Score=47.17 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=35.7
Q ss_pred HHHHHHccceEEEEEecCCCH---HHHHHH---HhccCCCCCCCEEEEEeCchhhhhhcCCCeEE
Q 041551 235 SQLNRLARKMVLLVFDDVNNP---RQIESL---IGHLDHLASGSRVIITTRDKQVLKNCWAGQIY 293 (808)
Q Consensus 235 ~l~~~L~~~~~LlVlDdv~~~---~~~~~l---~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~ 293 (808)
.+.+.+--++-|.|||..++- +.++.+ ...+. .+|+-+||.|-.+.++.....+.++
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEE
Confidence 344455567889999988753 222222 22222 3466688888888888877666555
No 399
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.83 E-value=0.33 Score=48.30 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
-.+++|.|..|.|||||++.++..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999998863
No 400
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.82 E-value=0.55 Score=47.27 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-.+++|.|..|.|||||++.++-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 34799999999999999999885
No 401
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.81 E-value=0.22 Score=54.94 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..++.++|.+|+||||.|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999888754
No 402
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.80 E-value=0.077 Score=59.26 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=24.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
..+|+|+|.+|+||||++..++..+..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999998865543
No 403
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.79 E-value=0.042 Score=50.71 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=21.8
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
.|+|+|+.|+|||||++.+...+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999999765443
No 404
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.79 E-value=0.39 Score=49.75 Aligned_cols=106 Identities=17% Similarity=0.076 Sum_probs=57.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc-cCceEEEecchhhhhccCHHHHHHHHHhhHhcCccc------------ccH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRIL------------RDV 233 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~------------~~~ 233 (808)
-.++.|-|.+|+|||++|.+++..+..+ -..+.|++. .-...++...++....+.+.. +.+
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~Sl------Em~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~ 92 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSL------EMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERL 92 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEES------SS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcC------CCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHH
Confidence 4578899999999999999999977654 366777652 233445555555554332211 223
Q ss_pred HHHHHHHccceEEEEEecC-CCHHHHHHHHhccCCCCCCCEEEEEeC
Q 041551 234 RSQLNRLARKMVLLVFDDV-NNPRQIESLIGHLDHLASGSRVIITTR 279 (808)
Q Consensus 234 ~~l~~~L~~~~~LlVlDdv-~~~~~~~~l~~~l~~~~~gs~IiiTTR 279 (808)
......+.+.+ +.|.|.- .+.++++.....+.....+..+||.=.
T Consensus 93 ~~~~~~l~~~~-l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDy 138 (259)
T PF03796_consen 93 QAAAEKLSDLP-LYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDY 138 (259)
T ss_dssp HHHHHHHHTSE-EEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred HHHHHHHhhCc-EEEECCCCCCHHHHHHHHHHHHhhccCCCEEEech
Confidence 33344565655 4444432 244555544433322124445555443
No 405
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.78 E-value=0.55 Score=46.60 Aligned_cols=59 Identities=20% Similarity=0.396 Sum_probs=34.5
Q ss_pred HHHHHccceEEEEEecCC---CHHHHH-HHHhccCCCC-C-CCEEEEEeCchhhhhhcCCCeEEEec
Q 041551 236 QLNRLARKMVLLVFDDVN---NPRQIE-SLIGHLDHLA-S-GSRVIITTRDKQVLKNCWAGQIYQMK 296 (808)
Q Consensus 236 l~~~L~~~~~LlVlDdv~---~~~~~~-~l~~~l~~~~-~-gs~IiiTTR~~~v~~~~~~~~~~~l~ 296 (808)
+...+...+-++++|+.. |+...+ .+...+.... . |..||++|.+.+.... .+.++.++
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l~ 196 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRVE 196 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEEe
Confidence 344556788999999875 333333 3333332222 2 5678888888876543 45666554
No 406
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.76 E-value=0.049 Score=52.88 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.9
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
++++|.|+.|+||||||+.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988653
No 407
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.75 E-value=0.17 Score=55.88 Aligned_cols=87 Identities=23% Similarity=0.219 Sum_probs=50.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcC--------ccc--------
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLND--------RIL-------- 230 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--------~~~-------- 230 (808)
-.-++|.|-+|+|||||+..++.....+.+.++-+..+.+ ....+.++.+.++..-.-. .+.
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGE--R~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE--RTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEecc--CcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3458999999999999999988866544333332222222 2233455555554431111 011
Q ss_pred -ccHHHHHHHH---ccceEEEEEecCCCH
Q 041551 231 -RDVRSQLNRL---ARKMVLLVFDDVNNP 255 (808)
Q Consensus 231 -~~~~~l~~~L---~~~~~LlVlDdv~~~ 255 (808)
...-.+-+++ +++++|+++|++-..
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 1111233444 579999999999654
No 408
>PRK13946 shikimate kinase; Provisional
Probab=93.75 E-value=0.049 Score=53.18 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.+.|.++|++|+||||+|+.++.++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45699999999999999999998763
No 409
>PRK14529 adenylate kinase; Provisional
Probab=93.75 E-value=0.32 Score=48.68 Aligned_cols=90 Identities=21% Similarity=0.121 Sum_probs=46.4
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhccc-CceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccc-eEEE
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISRHF-EGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARK-MVLL 247 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~~F-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~-~~Ll 247 (808)
|.|.|++|+||||+|+.++.++.-.+ ...-.+.. +......+....+.++..-.-..+.-....+.+++.+. ..-+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~--~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~ 80 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFRE--HIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGW 80 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhh--hccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcE
Confidence 77899999999999999998764221 11111110 00111122222333332211112223445566666432 4569
Q ss_pred EEecCC-CHHHHHHH
Q 041551 248 VFDDVN-NPRQIESL 261 (808)
Q Consensus 248 VlDdv~-~~~~~~~l 261 (808)
|||..- +.+|.+.|
T Consensus 81 iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 81 LLDGFPRNKVQAEKL 95 (223)
T ss_pred EEeCCCCCHHHHHHH
Confidence 999985 44555544
No 410
>PRK09354 recA recombinase A; Provisional
Probab=93.75 E-value=0.097 Score=55.81 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=31.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEec
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN 203 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 203 (808)
-+++-|+|.+|+||||||.+++......-..++|+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~ 96 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDA 96 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC
Confidence 6788999999999999999998876666567788874
No 411
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.26 Score=50.44 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=25.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
.+.++|||.+|.|||-+|+.|+.++.-.|
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 67799999999999999999999876554
No 412
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.74 E-value=0.58 Score=53.11 Aligned_cols=50 Identities=26% Similarity=0.413 Sum_probs=34.0
Q ss_pred cchhhHhhhhHhhhcccCCccceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 145 EKMQRWGNTLTEAANLSGFDSHVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 145 ~~~~~~~~~l~~~~~~~g~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
+.|+.|.+.. +.|. ...+++.+.|++|.||||.++.+++.+ .|+..-|..
T Consensus 29 ~eV~~wl~~~-----~~~~-~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~n 78 (519)
T PF03215_consen 29 EEVRSWLEEM-----FSGS-SPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHH-----hccC-CCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecC
Confidence 4566665431 2232 225689999999999999999999875 355555643
No 413
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.73 E-value=0.23 Score=55.58 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=29.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
-.++.|.|.+|+|||||+.+++.....+-..++|++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 568999999999999999999987764445567776
No 414
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.69 E-value=0.15 Score=55.34 Aligned_cols=109 Identities=16% Similarity=0.086 Sum_probs=61.5
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccC--ceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFE--GSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMV 245 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~--~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~ 245 (808)
..|.|.|..|.||||++..+.+.+....+ .++-+.+-.+.... ....+....-.++ +.+.......++..|+..+=
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~-~~~~~~~~~q~ev-g~~~~~~~~~l~~aLR~~PD 227 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG-SPDDLLPPAQSQI-GRDVDSFANGIRLALRRAPK 227 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC-CCceeeccccccc-CCCccCHHHHHHHhhccCCC
Confidence 35789999999999999999887654332 23334332221110 1000100000010 11111334566777888999
Q ss_pred EEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCch
Q 041551 246 LLVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDK 281 (808)
Q Consensus 246 LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~ 281 (808)
.|+++.+.+.+.++..+... ..|..++-|--..
T Consensus 228 ~I~vGEiRd~et~~~al~aa---~TGH~v~tTlHa~ 260 (372)
T TIGR02525 228 IIGVGEIRDLETFQAAVLAG---QSGHFCLGTLHVK 260 (372)
T ss_pred EEeeCCCCCHHHHHHHHHHH---hcCCcEEEeeCCC
Confidence 99999999999887644432 3455555454433
No 415
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.69 E-value=0.069 Score=56.80 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=59.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhcc-CHHHHHHHHHhhHhcCcccccHHHHHHHHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETG-GIKDLQKELLSDVLNDRILRDVRSQLNRLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~-~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~ 245 (808)
-..++|.|..|.|||||++.+...+... ...+.+.+..+..... ....+... ....+.......+.+...|+..+=
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~-~~iv~ied~~El~~~~~~~~~l~~~--~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTREIFLPHPNYVHLFYS--KGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCcc-ccEEEEcCccccCCCCCCEEEEEec--CCCCCcCccCHHHHHHHHhcCCCC
Confidence 3569999999999999999988765433 2334444332221110 00000000 000001112344556666788888
Q ss_pred EEEEecCCCHHHHHHHHhccCCCCCCCE-EEEEeCchh
Q 041551 246 LLVFDDVNNPRQIESLIGHLDHLASGSR-VIITTRDKQ 282 (808)
Q Consensus 246 LlVlDdv~~~~~~~~l~~~l~~~~~gs~-IiiTTR~~~ 282 (808)
.+|+|.+.+.+.++.+ .... .|.. ++.|+-..+
T Consensus 221 ~ii~gE~r~~e~~~~l-~a~~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 221 RIILGELRGDEAFDFI-RAVN---TGHPGSITTLHAGS 254 (308)
T ss_pred eEEEeccCCHHHHHHH-HHHh---cCCCeEEEEEeCCC
Confidence 8999999997766544 3332 3333 466665544
No 416
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.68 E-value=0.25 Score=54.44 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=29.9
Q ss_pred cchhhHhhhhHhhhcccCCccceeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 145 EKMQRWGNTLTEAANLSGFDSHVISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 145 ~~~~~~~~~l~~~~~~~g~~~~~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
+.|+.|...+.....-. ..++..|+|++|.||||..+.++...
T Consensus 92 ~eVk~WL~~~~~~~~~l----~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 92 SEVKQWLKQVAEFTPKL----GSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHHHHHHHHHHHhccCC----CceEEEEeCCCCCCchhHHHHHHHhh
Confidence 34666765333332221 26789999999999999999988754
No 417
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.65 E-value=0.085 Score=52.74 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=28.8
Q ss_pred CCccceeEEEEeecCCCcHhHHHHHHHHHhhcccCc
Q 041551 162 GFDSHVISIWIWGIGGIGKTTIADAVFNKISRHFEG 197 (808)
Q Consensus 162 g~~~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~ 197 (808)
|...+...|.++||+|.||||..++++..+..++..
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 334446678899999999999999999877776654
No 418
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.65 E-value=0.55 Score=51.66 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
-.+|+++|..|+||||++..++.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999888753
No 419
>PRK13948 shikimate kinase; Provisional
Probab=93.62 E-value=0.054 Score=52.47 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=23.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.+.|.++|+.|+||||+++.++.+..
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56799999999999999999998764
No 420
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.62 E-value=0.53 Score=48.14 Aligned_cols=36 Identities=22% Similarity=0.132 Sum_probs=28.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc-cCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~ 202 (808)
-.++.|.|.+|.|||++|.+++.....+ =..++|++
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 5689999999999999999988865544 34556665
No 421
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.61 E-value=0.07 Score=52.03 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=29.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFA 201 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 201 (808)
.|+|.|+|+.|+|||||++.+..+...+|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 46899999999999999999999888888544444
No 422
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.60 E-value=0.1 Score=62.30 Aligned_cols=111 Identities=17% Similarity=0.203 Sum_probs=56.4
Q ss_pred cceEEEEEecCCC---HHHHHH----HHhccCCCCCCCEEEEEeCchhhhhhcCC-CeE--EEecCCChhhHHHHHHHHh
Q 041551 242 RKMVLLVFDDVNN---PRQIES----LIGHLDHLASGSRVIITTRDKQVLKNCWA-GQI--YQMKELVYTDAQKLFSQYA 311 (808)
Q Consensus 242 ~~~~LlVlDdv~~---~~~~~~----l~~~l~~~~~gs~IiiTTR~~~v~~~~~~-~~~--~~l~~L~~~ea~~Lf~~~~ 311 (808)
..+-|+++|..-. +..... ++..+. ..|+.+|+||-...+...... ..+ ..+. ++. +.... ..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~p-~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLSP-TYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCce-EEEE
Confidence 4789999999853 333222 233332 357899999999876433211 111 1111 111 11111 1111
Q ss_pred hcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhhcCCCHHHHHHHHhhhh
Q 041551 312 FRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLE 362 (808)
Q Consensus 312 ~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~w~~~l~~l~ 362 (808)
. .+.+. ...|-+|++++ |+|-.+..-|..+.+....++..+++++.
T Consensus 476 ~-~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 476 L-KGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred C-CCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 11111 23355666665 78888777777665554455555555543
No 423
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.60 E-value=0.16 Score=46.09 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=5.3
Q ss_pred CCCCCCCcEEecCC
Q 041551 552 LSRAKNLEILWLRG 565 (808)
Q Consensus 552 ~~~l~~L~~L~L~~ 565 (808)
|.++++|+.+.+.+
T Consensus 31 F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 31 FSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT-SEEEESS
T ss_pred cccccccccccccc
Confidence 44444444444443
No 424
>PF13245 AAA_19: Part of AAA domain
Probab=93.59 E-value=0.12 Score=42.08 Aligned_cols=23 Identities=30% Similarity=0.224 Sum_probs=17.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-+++.|.|.+|.|||+++.+...
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34577899999999955555444
No 425
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.59 E-value=0.058 Score=51.57 Aligned_cols=24 Identities=38% Similarity=0.678 Sum_probs=20.6
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhc
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
|.|.|.+|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999997754
No 426
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.059 Score=61.21 Aligned_cols=136 Identities=15% Similarity=0.243 Sum_probs=71.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
-++++++|++|+|||.|++.+++.+...|-... +-.+++.+. ++--.+.....+.+ ..++.++ ..+.+.=+
T Consensus 350 GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrDEAE---IRGHRRTYIGamPG----rIiQ~mk-ka~~~NPv 420 (782)
T COG0466 350 GPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRDEAE---IRGHRRTYIGAMPG----KIIQGMK-KAGVKNPV 420 (782)
T ss_pred CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCccccHHH---hccccccccccCCh----HHHHHHH-HhCCcCCe
Confidence 468999999999999999999998777664322 111111111 11111222222211 1122222 22456678
Q ss_pred EEEecCCCHH------HHHHHHhccC-CCC------------CCCEEE-EEeCch-h-h-hhhcCCCeEEEecCCChhhH
Q 041551 247 LVFDDVNNPR------QIESLIGHLD-HLA------------SGSRVI-ITTRDK-Q-V-LKNCWAGQIYQMKELVYTDA 303 (808)
Q Consensus 247 lVlDdv~~~~------~~~~l~~~l~-~~~------------~gs~Ii-iTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea 303 (808)
++||.++... .-.+++..++ ..+ .=|.|+ |||-|. + + ......-.++++.+.+++|-
T Consensus 421 ~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EK 500 (782)
T COG0466 421 FLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEK 500 (782)
T ss_pred EEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHH
Confidence 9999997421 1222222221 000 114444 444433 1 1 11122337899999999998
Q ss_pred HHHHHHHh
Q 041551 304 QKLFSQYA 311 (808)
Q Consensus 304 ~~Lf~~~~ 311 (808)
.+.-.++.
T Consensus 501 l~IAk~~L 508 (782)
T COG0466 501 LEIAKRHL 508 (782)
T ss_pred HHHHHHhc
Confidence 88777665
No 427
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.57 E-value=0.35 Score=55.46 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=19.9
Q ss_pred eEEEEeecCCCcHhHHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
.-|.|+|.+|+|||++|+.+++.
T Consensus 87 ~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 87 QHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999864
No 428
>PRK10867 signal recognition particle protein; Provisional
Probab=93.57 E-value=0.25 Score=54.55 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=24.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
..+|.++|.+|+||||+|..++..+..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 6789999999999999999888866555
No 429
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.56 E-value=0.13 Score=57.68 Aligned_cols=87 Identities=22% Similarity=0.223 Sum_probs=49.1
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhccc-CceEEEecchhhhhccCHHHHHHHHHhhHh----cCccc------ccHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHF-EGSYFAQNVREAEETGGIKDLQKELLSDVL----NDRIL------RDVRSQ 236 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~----~~~~~------~~~~~l 236 (808)
.-.+|+|.+|.|||||++.+++.+.... +..+++..+.+- ...+.++.+.+-.++. ..... ...-.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgER--peEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDER--PEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCc--hhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999775533 333444433221 2223334433311111 11111 112223
Q ss_pred HHHH--ccceEEEEEecCCCHH
Q 041551 237 LNRL--ARKMVLLVFDDVNNPR 256 (808)
Q Consensus 237 ~~~L--~~~~~LlVlDdv~~~~ 256 (808)
-+++ .++.+||++|++....
T Consensus 495 Ae~fre~G~dVlillDSlTR~A 516 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRLG 516 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHHH
Confidence 3444 5789999999986543
No 430
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.53 E-value=0.48 Score=47.34 Aligned_cols=23 Identities=22% Similarity=0.086 Sum_probs=20.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
.+++.|+|..|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47889999999999999999874
No 431
>PRK13975 thymidylate kinase; Provisional
Probab=93.52 E-value=0.064 Score=52.95 Aligned_cols=26 Identities=38% Similarity=0.386 Sum_probs=23.3
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
..|+|.|+.|+||||+|+.++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999997754
No 432
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=93.50 E-value=0.67 Score=45.70 Aligned_cols=21 Identities=38% Similarity=0.362 Sum_probs=19.2
Q ss_pred EEEEeecCCCcHhHHHHHHHH
Q 041551 169 SIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~ 189 (808)
+++|+|..|.|||||++.++-
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999873
No 433
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.48 E-value=0.2 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=21.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-.+++|.|+.|.|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999997
No 434
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.47 E-value=0.27 Score=50.83 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=32.8
Q ss_pred cceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEec
Q 041551 165 SHVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN 203 (808)
Q Consensus 165 ~~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 203 (808)
..-+++=|+|+.|.||||+|.+++-.....-..++|++.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDt 96 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDT 96 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeC
Confidence 336788999999999999999988876666668899884
No 435
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.46 E-value=1.4 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.448 Sum_probs=20.3
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.|.|+|..|+|||++|+.+.+.-
T Consensus 221 pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 221 TVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CEEEECCCCccHHHHHHHHHHhC
Confidence 47899999999999999998753
No 436
>PLN02772 guanylate kinase
Probab=93.44 E-value=0.21 Score=53.83 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=24.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccC
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFE 196 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~ 196 (808)
.+++.|+|+.|+||+||++.+..+....|.
T Consensus 135 ~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~ 164 (398)
T PLN02772 135 EKPIVISGPSGVGKGTLISMLMKEFPSMFG 164 (398)
T ss_pred CcEEEEECCCCCCHHHHHHHHhhhcccccc
Confidence 578999999999999999999876543443
No 437
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.43 E-value=0.11 Score=54.78 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=28.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.+++...|.||+||||+|.+.+-........+.-++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 478999999999999999998877666655555554
No 438
>PRK14526 adenylate kinase; Provisional
Probab=93.43 E-value=0.34 Score=48.21 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEeecCCCcHhHHHHHHHHHh
Q 041551 170 IWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~ 191 (808)
|+|+|++|+||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988654
No 439
>PRK14530 adenylate kinase; Provisional
Probab=93.42 E-value=0.061 Score=54.01 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.0
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.|.|.|++|+||||+|+.++.++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.41 E-value=0.09 Score=51.34 Aligned_cols=33 Identities=24% Similarity=0.151 Sum_probs=26.6
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
+.|.|.+|+|||+||.+++......=..++|++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999886544445677775
No 441
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.41 E-value=0.073 Score=50.84 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=24.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
.++++|+|..|+|||||++.+......
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 568999999999999999999987654
No 442
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.38 E-value=0.3 Score=53.45 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.8
Q ss_pred eEEEEeecCCCcHhHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3799999999999999998874
No 443
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.38 E-value=0.18 Score=51.01 Aligned_cols=48 Identities=25% Similarity=0.424 Sum_probs=32.6
Q ss_pred HHHHccceEEEEEecC----C--CHHHHHHHHhccCCCCCCCEEEEEeCchhhhhh
Q 041551 237 LNRLARKMVLLVFDDV----N--NPRQIESLIGHLDHLASGSRVIITTRDKQVLKN 286 (808)
Q Consensus 237 ~~~L~~~~~LlVlDdv----~--~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~ 286 (808)
-+.|.+++=|++||.- | ....+-+++..+.. .|..||++|-+-+....
T Consensus 151 ARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 151 ARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHh
Confidence 3457788999999963 3 23345555555543 38899999998876554
No 444
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.38 E-value=0.1 Score=51.03 Aligned_cols=21 Identities=29% Similarity=0.063 Sum_probs=18.8
Q ss_pred EEEEeecCCCcHhHHHHHHHH
Q 041551 169 SIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~ 189 (808)
++.|+|..|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999883
No 445
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.36 E-value=0.06 Score=50.38 Aligned_cols=20 Identities=40% Similarity=0.488 Sum_probs=18.6
Q ss_pred EEEEeecCCCcHhHHHHHHH
Q 041551 169 SIWIWGIGGIGKTTIADAVF 188 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~ 188 (808)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 446
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.35 E-value=0.069 Score=52.50 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999864
No 447
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.33 E-value=0.067 Score=50.56 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.3
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
-|.++||.|.||||+.++++....-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 478999999999999999998766554
No 448
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.5 Score=53.41 Aligned_cols=150 Identities=16% Similarity=0.144 Sum_probs=79.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccc-eE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARK-MV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~-~~ 245 (808)
.+-+..+|++|.|||-+|++|+++.. +.+|..+.. + ++....++......+.+.+..+.+ +.
T Consensus 218 prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~p---------e----li~k~~gEte~~LR~~f~~a~k~~~ps 280 (693)
T KOG0730|consen 218 PRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGP---------E----LISKFPGETESNLRKAFAEALKFQVPS 280 (693)
T ss_pred CCCccccCCCCCChHHHHHHHHHHhC----ceeEecccH---------H----HHHhcccchHHHHHHHHHHHhccCCCe
Confidence 66788999999999999999999765 223333211 1 222222322223334444455666 88
Q ss_pred EEEEecCCCHH------------HHHHHHhccCCCCCCCEEE--EEeCchhhhhh-c---CCCeEEEecCCChhhHHHHH
Q 041551 246 LLVFDDVNNPR------------QIESLIGHLDHLASGSRVI--ITTRDKQVLKN-C---WAGQIYQMKELVYTDAQKLF 307 (808)
Q Consensus 246 LlVlDdv~~~~------------~~~~l~~~l~~~~~gs~Ii--iTTR~~~v~~~-~---~~~~~~~l~~L~~~ea~~Lf 307 (808)
.+.+|+++..- ...++.....+.++.+++| -|||..+-... . ..+....+..-+..+-.+.+
T Consensus 281 ii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl 360 (693)
T KOG0730|consen 281 IIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDIL 360 (693)
T ss_pred eEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHH
Confidence 89998875421 1233333334444444443 36665543221 1 22345666666666666666
Q ss_pred HHHhhcCCCCCchHHHHHHHHHHHhcCch
Q 041551 308 SQYAFRGGHLDSSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~i~~~~~glP 336 (808)
....-.-... .......++..+.|.-
T Consensus 361 ~~l~k~~~~~---~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 361 RVLTKKMNLL---SDVDLEDIAVSTHGYV 386 (693)
T ss_pred HHHHHhcCCc---chhhHHHHHHHccchh
Confidence 6554222222 1223345556666553
No 449
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.31 E-value=0.035 Score=33.00 Aligned_cols=21 Identities=10% Similarity=0.203 Sum_probs=12.2
Q ss_pred cceEeecCCCCcccccchhhc
Q 041551 511 KLVSLKMPRSKVQQLWDDVQD 531 (808)
Q Consensus 511 ~L~~L~L~~n~l~~l~~~~~~ 531 (808)
+|++|+|++|+++.+|+.|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355666666666666655443
No 450
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.63 Score=55.40 Aligned_cols=88 Identities=16% Similarity=0.242 Sum_probs=55.2
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCc----ccccHHHHHHHHc
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDR----ILRDVRSQLNRLA 241 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~----~~~~~~~l~~~L~ 241 (808)
+.-...+.|+.|+|||.||++++.-+-+..+..+-+. +.+.++ .....+.. ..+....+.+.++
T Consensus 590 ~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----------mse~~e--vskligsp~gyvG~e~gg~Lteavr 657 (898)
T KOG1051|consen 590 PDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----------MSEFQE--VSKLIGSPPGYVGKEEGGQLTEAVK 657 (898)
T ss_pred CCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----------hhhhhh--hhhccCCCcccccchhHHHHHHHHh
Confidence 3567789999999999999999987766555544443 222222 22222221 2255667888887
Q ss_pred cce-EEEEEecCCCH--HHHHHHHhcc
Q 041551 242 RKM-VLLVFDDVNNP--RQIESLIGHL 265 (808)
Q Consensus 242 ~~~-~LlVlDdv~~~--~~~~~l~~~l 265 (808)
+++ ..|.||||+.. +....+...+
T Consensus 658 rrP~sVVLfdeIEkAh~~v~n~llq~l 684 (898)
T KOG1051|consen 658 RRPYSVVLFEEIEKAHPDVLNILLQLL 684 (898)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHH
Confidence 776 46678999853 4445444444
No 451
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.30 E-value=0.1 Score=54.11 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=33.7
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.-+++.|+|.+|+|||++|.++..+...+...++|++
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3678999999999999999999998888888899987
No 452
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.30 E-value=0.21 Score=49.54 Aligned_cols=23 Identities=22% Similarity=-0.006 Sum_probs=20.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
.++++|.|..|.||||+.+.++-
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999998874
No 453
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.29 E-value=0.065 Score=51.63 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.9
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
+.|.|+|+.|.||||+|+.++.+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4589999999999999999998653
No 454
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.27 E-value=0.11 Score=53.97 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=28.9
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
++|+|+|.+|+|||||+..+...++.+. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999888776 455554
No 455
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.25 E-value=0.23 Score=55.09 Aligned_cols=86 Identities=22% Similarity=0.185 Sum_probs=50.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc-cCceEEEecchhhhhccCHHHHHHHHHhhHhc--------Cccc-------
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQNVREAEETGGIKDLQKELLSDVLN--------DRIL------- 230 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~--------~~~~------- 230 (808)
-.-++|.|.+|+|||||+..+++....+ -+.++|.- +.+ ......++.+.+...-.- ..+.
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~l-iGE--R~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAG-VGE--RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEc-CCc--chHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 3458999999999999999999866543 34445543 221 123344555555432110 0011
Q ss_pred --ccHHHHHHHH--c-cceEEEEEecCCCH
Q 041551 231 --RDVRSQLNRL--A-RKMVLLVFDDVNNP 255 (808)
Q Consensus 231 --~~~~~l~~~L--~-~~~~LlVlDdv~~~ 255 (808)
...-.+-+++ + ++++|+++|++-..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 1112234444 3 78999999999653
No 456
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.25 E-value=0.43 Score=56.92 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
-|.|+|..|+|||++|+.+.+.-
T Consensus 401 pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 401 TVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred CEEEECCCCcCHHHHHHHHHHhc
Confidence 58899999999999999998753
No 457
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.25 E-value=0.13 Score=51.15 Aligned_cols=22 Identities=23% Similarity=0.034 Sum_probs=20.3
Q ss_pred eEEEEeecCCCcHhHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
.+++|+|..|.||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6799999999999999999984
No 458
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.24 E-value=0.074 Score=55.55 Aligned_cols=105 Identities=17% Similarity=0.180 Sum_probs=59.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhc-CcccccHHHHHHHHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLN-DRILRDVRSQLNRLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~-~~~~~~~~~l~~~L~~~~~ 245 (808)
-..|.|.|..|.||||++..+...+...-..++-+.+..+..... . ....+.. .+.....+.+...|+..+=
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~-~------~~~~~~~~~~~~~~~~~l~~~LR~~pD 199 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPG-P------NQIQIQTRRDEISYEDLLKSALRQDPD 199 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SC-S------SEEEEEEETTTBSHHHHHHHHTTS--S
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecc-c------ceEEEEeecCcccHHHHHHHHhcCCCC
Confidence 456899999999999999999987655513333344322211100 0 0000000 1222455666777888888
Q ss_pred EEEEecCCCHHHHHHHHhccCCCCCCCEE-EEEeCchh
Q 041551 246 LLVFDDVNNPRQIESLIGHLDHLASGSRV-IITTRDKQ 282 (808)
Q Consensus 246 LlVlDdv~~~~~~~~l~~~l~~~~~gs~I-iiTTR~~~ 282 (808)
.+|++.+.+.+.++.+... ..|..+ +.|....+
T Consensus 200 ~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~s 233 (270)
T PF00437_consen 200 VIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHANS 233 (270)
T ss_dssp EEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-SS
T ss_pred cccccccCCHhHHHHHHhh----ccCCceeeeeeecCC
Confidence 9999999998887774433 457777 66655443
No 459
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.24 E-value=0.41 Score=49.19 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=51.5
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh----cccCceEEEecchhhhhccCHHHHHHHHHhhHhcCc--------cc-----
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS----RHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDR--------IL----- 230 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~----~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~--------~~----- 230 (808)
.-++|.|-.|+|||+|+..++++.. .+-+.++|+-. .+ ......++.+++...-.-.. +.
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~I-Ge--R~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r 146 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAM-GI--TMEDARFFKDDFEETGALERVVLFLNLANDPTIER 146 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEe-cc--ccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHH
Confidence 4589999999999999999887643 22345555542 11 12344455555543311000 11
Q ss_pred ----ccHHHHHHHH--c-cceEEEEEecCCCHHH-HHHH
Q 041551 231 ----RDVRSQLNRL--A-RKMVLLVFDDVNNPRQ-IESL 261 (808)
Q Consensus 231 ----~~~~~l~~~L--~-~~~~LlVlDdv~~~~~-~~~l 261 (808)
-..-.+-+++ + ++++|+++||+-...+ ..++
T Consensus 147 ~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~rEi 185 (276)
T cd01135 147 IITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEALREI 185 (276)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHHHHH
Confidence 1111233444 2 6899999999976433 4444
No 460
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.21 E-value=0.12 Score=50.94 Aligned_cols=34 Identities=32% Similarity=0.396 Sum_probs=25.2
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.|+|+|-||+||||+|..++.++..+=...+.+.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvV 35 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVV 35 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 5899999999999999997776655432334433
No 461
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.14 E-value=0.27 Score=54.22 Aligned_cols=93 Identities=23% Similarity=0.206 Sum_probs=52.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcC--------ccc--------
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLND--------RIL-------- 230 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--------~~~-------- 230 (808)
-.-++|.|.+|+|||||+..+++....+...++-+..+.+ ......++.+++...-.-. .+.
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGE--R~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE--RTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecC--CchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3458999999999999999998866544333333333322 1233455555554321100 011
Q ss_pred -ccHHHHHHHH---ccceEEEEEecCCCHHH-HHHH
Q 041551 231 -RDVRSQLNRL---ARKMVLLVFDDVNNPRQ-IESL 261 (808)
Q Consensus 231 -~~~~~l~~~L---~~~~~LlVlDdv~~~~~-~~~l 261 (808)
...-.+-+++ +++++|+++||+-...+ .+++
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REi 256 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEV 256 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHH
Confidence 1112233445 46899999999976432 4444
No 462
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=93.11 E-value=1.1 Score=47.97 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=32.0
Q ss_pred eEEEecCCChhhHHHHHHHHhhcC----CCCCchHHHHHHHHHHHhcCchhhHHHHhhhh
Q 041551 291 QIYQMKELVYTDAQKLFSQYAFRG----GHLDSSYTELTDKAIKYAQGVPLALKVLGCYL 346 (808)
Q Consensus 291 ~~~~l~~L~~~ea~~Lf~~~~~~~----~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L 346 (808)
.+++|+..+.+|+.++..-+.-.. ..+. ++--+++.-..+|.|--++.++.++
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 467889999999988766544110 1111 2334556666788886566555544
No 463
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.09 E-value=0.063 Score=52.15 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999999753
No 464
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.09 E-value=0.6 Score=43.22 Aligned_cols=99 Identities=17% Similarity=0.238 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcceeEEecccccchhhhHHHHHHHHHhhhcCCCeEEEEEeeeCCCccccccchhHHHHHhhhccCccchh
Q 041551 69 QSLLDTIEASAISIIIFSERYASSGWCLDELSKIFECKHDYGQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGERYPEKMQ 148 (808)
Q Consensus 69 ~~i~~ai~~s~~~v~v~S~~y~~s~~c~~el~~~~~~~~~~~~~v~Pv~~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~ 148 (808)
.++.++|+++.+.+.|+..+...+.+. .++.+.+.... .+..++-|+-+.|-.. + +.+.
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~DL~~--~-----------------~~~~ 61 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKADLLT--E-----------------EQRK 61 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechhcCC--H-----------------HHHH
Confidence 467899999999999998765444332 24444333221 2334555665555210 0 0111
Q ss_pred hHhhhhHhh----hcccCCccceeEEEEeecCCCcHhHHHHHHHH
Q 041551 149 RWGNTLTEA----ANLSGFDSHVISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 149 ~~~~~l~~~----~~~~g~~~~~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
.|.+.+... -..+.... -..+.+.|.+|+|||||...+..
T Consensus 62 ~~~~~~~~~~~~ii~iSa~~~-~~~~~~~G~~~vGKstlin~l~~ 105 (141)
T cd01857 62 AWAEYFKKEGIVVVFFSALKE-NATIGLVGYPNVGKSSLINALVG 105 (141)
T ss_pred HHHHHHHhcCCeEEEEEecCC-CcEEEEECCCCCCHHHHHHHHhC
Confidence 222211110 00010011 12688999999999999988874
No 465
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.08 E-value=0.059 Score=51.42 Aligned_cols=22 Identities=36% Similarity=0.675 Sum_probs=19.7
Q ss_pred EEEeecCCCcHhHHHHHHHHHh
Q 041551 170 IWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~ 191 (808)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 466
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.07 E-value=0.33 Score=47.72 Aligned_cols=26 Identities=38% Similarity=0.440 Sum_probs=23.1
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
..|+|.|..|+||||+|+.++..+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999999987654
No 467
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.98 E-value=0.29 Score=52.22 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.6
Q ss_pred EEEeecCCCcHhHHHHHHHHHhh
Q 041551 170 IWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
+++.|++|.||||+++.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998765
No 468
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=92.97 E-value=0.25 Score=53.78 Aligned_cols=35 Identities=26% Similarity=0.244 Sum_probs=30.0
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHh--hcccCceEEEe
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKI--SRHFEGSYFAQ 202 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~--~~~F~~~~~~~ 202 (808)
+++.|.|.+|.|||.||..++.++ ........++.
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 578999999999999999999988 66667777765
No 469
>PRK04182 cytidylate kinase; Provisional
Probab=92.94 E-value=0.081 Score=51.30 Aligned_cols=24 Identities=42% Similarity=0.448 Sum_probs=21.6
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
+|+|.|+.|.||||+|+.++.++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998753
No 470
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.93 E-value=0.3 Score=44.19 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=30.5
Q ss_pred CCCCCCCcEEecCCCCCCcccc-ccccCCCCcCEEecCCCCCCCcCCCcC--CCCCCCEEeccC
Q 041551 552 LSRAKNLEILWLRGCLSLVETH-STIQYLNKLEDLDLDYCISLTSLPTSI--HSKHLKELSLRG 612 (808)
Q Consensus 552 ~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l~~L~~L~L~~ 612 (808)
|.++++|+.+.+.. .+..++ ..+.++++|+.+.+.+ .+..++... ++++|+.+.+..
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS
T ss_pred HhCCCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc
Confidence 66777888888774 233443 3467777888888876 266666644 555677777754
No 471
>PRK13768 GTPase; Provisional
Probab=92.93 E-value=0.13 Score=52.90 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=23.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
..+++|.|.||+||||++..+....+.+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 3578999999999999999988765543
No 472
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.93 E-value=0.082 Score=50.88 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.|.|+|+.|.||||+|+.++.++.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999998763
No 473
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=92.89 E-value=0.36 Score=51.67 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=28.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc------CceEEEec
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQN 203 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~ 203 (808)
-.++-|+|.+|+|||++|.+++....... ..++|++.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~t 144 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDT 144 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeC
Confidence 67888999999999999999987543211 36788773
No 474
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=92.89 E-value=0.81 Score=47.62 Aligned_cols=144 Identities=17% Similarity=0.181 Sum_probs=77.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhh--hccCHHHHHHHHHhhHhcCcc-----cccHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAE--ETGGIKDLQKELLSDVLNDRI-----LRDVRSQLNR 239 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~--~~~~~~~l~~~ll~~~~~~~~-----~~~~~~l~~~ 239 (808)
...|.|+|+.|.|||+|......+ .+.|.-...+..+...- .+..+..|.+++-.+...... .+....+.+.
T Consensus 49 snsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~ 127 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEA 127 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHH
Confidence 345889999999999998766655 33444444443332221 222344455554433322211 1555666666
Q ss_pred Hc------cceEEEEEecCCCHH----H--HHHHHhc-cCCCCCCCEEEEEeCchhhh-------hhcCCCeEEEecCCC
Q 041551 240 LA------RKMVLLVFDDVNNPR----Q--IESLIGH-LDHLASGSRVIITTRDKQVL-------KNCWAGQIYQMKELV 299 (808)
Q Consensus 240 L~------~~~~LlVlDdv~~~~----~--~~~l~~~-l~~~~~gs~IiiTTR~~~v~-------~~~~~~~~~~l~~L~ 299 (808)
|+ .-++.+|+|.++-.. | +-.+... -....|-|-|-+|||-.-.. ....-..++-++.++
T Consensus 128 L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~ 207 (408)
T KOG2228|consen 128 LKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLP 207 (408)
T ss_pred HhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCC
Confidence 63 246899999886421 1 1112111 11235667778899976321 111122356666677
Q ss_pred hhhHHHHHHHHh
Q 041551 300 YTDAQKLFSQYA 311 (808)
Q Consensus 300 ~~ea~~Lf~~~~ 311 (808)
-++-.+++++..
T Consensus 208 l~~yv~l~r~ll 219 (408)
T KOG2228|consen 208 LGDYVDLYRKLL 219 (408)
T ss_pred hHHHHHHHHHHh
Confidence 777777666554
No 475
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.88 E-value=0.13 Score=53.37 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=28.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.++|+++|++|+||||++..++..+...-..+.++.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 688999999999999999999987765533444444
No 476
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.86 E-value=0.21 Score=51.25 Aligned_cols=93 Identities=16% Similarity=0.109 Sum_probs=49.4
Q ss_pred eEEEEeecCCCcHhHHH-HHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcC--------ccc---c----
Q 041551 168 ISIWIWGIGGIGKTTIA-DAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLND--------RIL---R---- 231 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA-~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--------~~~---~---- 231 (808)
.-++|.|..|+|||+|| ..+.++. +-+..+.+..+.+ ......++.+.+...-... .+. .
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGe--r~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQ--KASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEeccc--chHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 45899999999999996 5555543 2244433333222 1233445555554321100 011 0
Q ss_pred --cHHHHHHHH--ccceEEEEEecCCCH-HHHHHHHhc
Q 041551 232 --DVRSQLNRL--ARKMVLLVFDDVNNP-RQIESLIGH 264 (808)
Q Consensus 232 --~~~~l~~~L--~~~~~LlVlDdv~~~-~~~~~l~~~ 264 (808)
..-.+-+++ +++.+|+|+||+... +.++++...
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl~ 183 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSLL 183 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHHh
Confidence 111223333 478999999999765 335555433
No 477
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.85 E-value=0.55 Score=47.14 Aligned_cols=111 Identities=13% Similarity=0.059 Sum_probs=56.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH-HhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCccc--------ccHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN-KISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRIL--------RDVRSQL 237 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~-~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~--------~~~~~l~ 237 (808)
.++++|.|..|.||||+.+.+.- .+..+-...+|-... .-. ...+++..+...+.. ..+.++.
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~----~~~----~~~~i~~~~~~~d~~~~~~StF~~e~~~~~ 102 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSA----TLS----IFDSVLTRMGASDSIQHGMSTFMVELSETS 102 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCce----EEe----ccceEEEEecCccccccccchHHHHHHHHH
Confidence 45789999999999999998886 332222211221100 000 000011111110000 1222333
Q ss_pred HHH--ccceEEEEEecCCC----HH--H-HHHHHhccCCCCCCCEEEEEeCchhhhhh
Q 041551 238 NRL--ARKMVLLVFDDVNN----PR--Q-IESLIGHLDHLASGSRVIITTRDKQVLKN 286 (808)
Q Consensus 238 ~~L--~~~~~LlVlDdv~~----~~--~-~~~l~~~l~~~~~gs~IiiTTR~~~v~~~ 286 (808)
+.+ .+++.|+++|..-. .+ . ...+...+.. ..++.+|++|...+++..
T Consensus 103 ~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 103 HILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHH
Confidence 333 35789999999631 11 1 1233333332 247899999999987653
No 478
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.85 E-value=0.12 Score=48.69 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.1
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
+++|+|..|+|||||+.++...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58899999999999999999977654
No 479
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.52 Score=51.78 Aligned_cols=95 Identities=19% Similarity=0.324 Sum_probs=53.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH----cc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL----AR 242 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L----~~ 242 (808)
.+=|.++|++|.|||-||++++-+..- -+|...-.+ +.++. - + ...+++++.+ ++
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~V----PFF~~sGSE------FdEm~----V---G----vGArRVRdLF~aAk~~ 395 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAGV----PFFYASGSE------FDEMF----V---G----VGARRVRDLFAAAKAR 395 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccCC----CeEeccccc------hhhhh----h---c----ccHHHHHHHHHHHHhc
Confidence 456889999999999999999864321 122221111 11110 0 0 1223333332 35
Q ss_pred ceEEEEEecCCC-------------HHHHHHHHhccCCCCCCCEEEE--EeCchh
Q 041551 243 KMVLLVFDDVNN-------------PRQIESLIGHLDHLASGSRVII--TTRDKQ 282 (808)
Q Consensus 243 ~~~LlVlDdv~~-------------~~~~~~l~~~l~~~~~gs~Iii--TTR~~~ 282 (808)
-++.|.+|.++. .+.+++++..++.+..+.-||| .|..++
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe 450 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE 450 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChh
Confidence 679999999864 2337777777776654433433 344443
No 480
>PRK14527 adenylate kinase; Provisional
Probab=92.81 E-value=0.087 Score=51.77 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=22.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|.|.|.+|.||||+|+.++.++
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 481
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.79 E-value=0.2 Score=55.26 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=20.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
-..++|+|..|.|||||++.++..
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999877753
No 482
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.78 E-value=0.23 Score=52.59 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=21.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
-..++|.|..|.|||||.+.++....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~ 94 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT 94 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC
Confidence 35689999999999999998887543
No 483
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.76 E-value=0.029 Score=64.00 Aligned_cols=106 Identities=30% Similarity=0.370 Sum_probs=49.5
Q ss_pred cccceEeecCCCC-ccc--ccchhhcccccceeccCCC-CCCCCCC-----CCCCCCCCcEEecCCCCCCccc-cccc-c
Q 041551 509 AEKLVSLKMPRSK-VQQ--LWDDVQDLVNLKEIDLSRS-ESLTKLP-----DLSRAKNLEILWLRGCLSLVET-HSTI-Q 577 (808)
Q Consensus 509 ~~~L~~L~L~~n~-l~~--l~~~~~~l~~L~~L~L~~n-~~~~~~p-----~~~~l~~L~~L~L~~n~~l~~~-p~~~-~ 577 (808)
..+|+.|.+..+. +.. +-.....+++|+.|++++| ......+ ....+++|+.|++++|..+... -..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4555566555542 222 2233455666666666652 2222222 1334566666666665432221 1111 1
Q ss_pred CCCCcCEEecCCCCCCCcCCCc--C-CCCCCCEEeccCCC
Q 041551 578 YLNKLEDLDLDYCISLTSLPTS--I-HSKHLKELSLRGCS 614 (808)
Q Consensus 578 ~l~~L~~L~l~~~~~l~~lp~~--~-~l~~L~~L~L~~~~ 614 (808)
.+++|+.|.+.+|..+++..-. . .+++|++|+|++|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 2556666666555443222111 1 34556666666654
No 484
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.75 E-value=0.29 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=21.0
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
-++.|+|.+|+||||+.+.+.-..
T Consensus 410 dvvaVvGqSGaGKttllRmi~G~~ 433 (593)
T COG2401 410 DVVAVVGQSGAGKTTLLRMILGAQ 433 (593)
T ss_pred CeEEEEecCCCCcchHHHHHHHHh
Confidence 479999999999999999888643
No 485
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.75 E-value=0.13 Score=43.62 Aligned_cols=25 Identities=36% Similarity=0.609 Sum_probs=22.0
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
++.+.|.+|+||||++..++..+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999997765
No 486
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.75 E-value=0.67 Score=51.82 Aligned_cols=52 Identities=23% Similarity=0.164 Sum_probs=34.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh-cccCceEEEecchhhhhccCHHHHHHHHHhhH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS-RHFEGSYFAQNVREAEETGGIKDLQKELLSDV 224 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~-~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 224 (808)
-.++.|.|.+|+|||++|..++.... .+-..++|++ ......++...++...
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLASK 246 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHHH
Confidence 55889999999999999999997654 3223455654 2234455555555443
No 487
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.72 E-value=0.23 Score=54.67 Aligned_cols=26 Identities=15% Similarity=0.255 Sum_probs=22.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
-..++|.|..|+|||||++.+++...
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~ 183 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD 183 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 45689999999999999998887543
No 488
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.72 E-value=0.17 Score=55.57 Aligned_cols=90 Identities=16% Similarity=0.183 Sum_probs=49.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCc--------cc--------
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDR--------IL-------- 230 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~--------~~-------- 230 (808)
-..++|.|..|.|||||++.++..... +.+++. .+.+ ......++.+.++..-.-.. +.
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~-lIGE--R~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVG-LVGE--RGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCCC--CEEEEE-EEcC--ChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 346899999999999999988864322 344443 2222 12233444444433211000 00
Q ss_pred -ccHHHHHHHH--ccceEEEEEecCCCHHH-HHHH
Q 041551 231 -RDVRSQLNRL--ARKMVLLVFDDVNNPRQ-IESL 261 (808)
Q Consensus 231 -~~~~~l~~~L--~~~~~LlVlDdv~~~~~-~~~l 261 (808)
...-.+-+++ +++++|+++||+-...+ ..++
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~REI 271 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREI 271 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHHHHHHHHH
Confidence 1111233344 58999999999966432 4443
No 489
>PRK06761 hypothetical protein; Provisional
Probab=92.69 E-value=0.13 Score=53.37 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=23.9
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
++|.|.|++|+||||+|+.++++....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 579999999999999999999976543
No 490
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=92.69 E-value=0.74 Score=46.42 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
-.+++|.|..|.|||||.+.++-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGI 49 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999998863
No 491
>PRK08149 ATP synthase SpaL; Validated
Probab=92.69 E-value=0.24 Score=54.42 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=20.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
-..++|.|..|.|||||+..++..
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~ 174 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEH 174 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcC
Confidence 346899999999999999988864
No 492
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.68 E-value=0.55 Score=48.36 Aligned_cols=36 Identities=17% Similarity=0.079 Sum_probs=26.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh--cc----cCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS--RH----FEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~--~~----F~~~~~~~ 202 (808)
-.+.=|+|.+|+|||+||.+++-... .. =..++|++
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyid 79 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYID 79 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEE
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEe
Confidence 45788999999999999998876432 21 12467776
No 493
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.68 E-value=0.83 Score=47.63 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=25.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
-.+++|+|..|.|||||.+.++.-+. -.+.+++.
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~ 63 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQID 63 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEEC
Confidence 34799999999999999999987543 24445543
No 494
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.67 E-value=0.091 Score=47.69 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.2
Q ss_pred eEEEEeecCCCcHhHHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
+-|.|.|-+|+||||+|.+++..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH
Confidence 34789999999999999999964
No 495
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.67 E-value=0.74 Score=54.21 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
-++|+++|+.|+||||++..++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999987653
No 496
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=92.64 E-value=0.49 Score=50.76 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.5
Q ss_pred EEEEeecCCCcHhHHHHHHHHH
Q 041551 169 SIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
-|.|+|-.|+||+++|+.+.+.
T Consensus 24 pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 24 PVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CEEEECCCCChHHHHHHHHHHh
Confidence 3789999999999999988764
No 497
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=1.9 Score=49.31 Aligned_cols=125 Identities=21% Similarity=0.307 Sum_probs=66.8
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceEEE
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMVLL 247 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~Ll 247 (808)
=|.++|++|.|||-||-+++.... .-|++.- +. +++ ....+.. .+.++.+.++- .-+++.|
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~-----~~fisvK-------GP-ElL----~KyIGaS-Eq~vR~lF~rA~~a~PCiL 764 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSN-----LRFISVK-------GP-ELL----SKYIGAS-EQNVRDLFERAQSAKPCIL 764 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCC-----eeEEEec-------CH-HHH----HHHhccc-HHHHHHHHHHhhccCCeEE
Confidence 488999999999999999886432 2234321 11 222 2222222 13444444444 3589999
Q ss_pred EEecCCCH-------------HHHHHHHhccCCC--CCCCEEEE-EeCchhhhhhc-CC---CeEEEecCCChhhHHHHH
Q 041551 248 VFDDVNNP-------------RQIESLIGHLDHL--ASGSRVII-TTRDKQVLKNC-WA---GQIYQMKELVYTDAQKLF 307 (808)
Q Consensus 248 VlDdv~~~-------------~~~~~l~~~l~~~--~~gs~Iii-TTR~~~v~~~~-~~---~~~~~l~~L~~~ea~~Lf 307 (808)
.+|..++. ..+++++..++.. -.|--|+- |||-.-+-... .. +..+.-+.-++.|-++.|
T Consensus 765 FFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il 844 (952)
T KOG0735|consen 765 FFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEIL 844 (952)
T ss_pred EeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHH
Confidence 99998752 2366776666422 23444554 55543222111 11 222223334455666666
Q ss_pred HHHh
Q 041551 308 SQYA 311 (808)
Q Consensus 308 ~~~~ 311 (808)
....
T Consensus 845 ~~ls 848 (952)
T KOG0735|consen 845 QVLS 848 (952)
T ss_pred HHHh
Confidence 6554
No 498
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.64 E-value=0.66 Score=45.64 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=21.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
-.+++|.|..|.|||||.+.++.-.
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999988643
No 499
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.63 E-value=0.2 Score=47.89 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.3
Q ss_pred EEEeecCCCcHhHHHHHHHHH
Q 041551 170 IWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~ 190 (808)
|.|+|..|.||+.+|+.+.+.
T Consensus 25 VlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 25 VLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEcCCCCcHHHHHHHHHHh
Confidence 679999999999999999883
No 500
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.61 E-value=0.088 Score=52.37 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
-.+|+|+|+.|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4579999999999999999999854
Done!