Query 041551
Match_columns 808
No_of_seqs 875 out of 4879
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 13:59:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.1E-39 3.7E-44 374.8 21.5 276 166-453 151-472 (549)
2 3ozi_A L6TR; plant TIR domain, 100.0 2.4E-39 8.1E-44 308.2 9.0 167 16-191 27-196 (204)
3 3jrn_A AT1G72930 protein; TIR 100.0 9.8E-39 3.4E-43 299.9 9.8 164 20-194 4-169 (176)
4 3sfz_A APAF-1, apoptotic pepti 100.0 2E-33 6.8E-38 356.6 19.8 274 166-452 146-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 1.5E-33 5.3E-38 326.5 16.9 252 167-445 150-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 5.7E-31 2E-35 306.8 19.1 269 166-448 146-448 (591)
7 3h16_A TIR protein; bacteria T 99.9 1.7E-27 6E-32 223.9 4.3 119 20-139 16-135 (154)
8 4fcg_A Uncharacterized protein 99.9 1.2E-22 4.2E-27 217.8 17.1 220 511-736 82-314 (328)
9 4fcg_A Uncharacterized protein 99.9 2.8E-22 9.7E-27 215.0 15.3 204 489-695 80-300 (328)
10 3rgz_A Protein brassinosteroid 99.8 6.9E-21 2.4E-25 228.2 17.9 244 490-736 394-717 (768)
11 1ogq_A PGIP-2, polygalacturona 99.8 2.5E-21 8.4E-26 206.3 11.9 240 490-734 50-302 (313)
12 1xku_A Decorin; proteoglycan, 99.8 1.7E-19 5.9E-24 193.7 23.4 240 489-736 51-306 (330)
13 3rgz_A Protein brassinosteroid 99.8 2.3E-20 8E-25 223.6 17.6 243 491-736 369-693 (768)
14 1ogq_A PGIP-2, polygalacturona 99.8 4.8E-21 1.6E-25 204.1 10.1 225 484-713 69-305 (313)
15 3ub2_A TOLL/interleukin-1 rece 99.8 3.9E-22 1.3E-26 184.1 0.9 108 16-125 2-112 (146)
16 1xku_A Decorin; proteoglycan, 99.8 2.3E-19 7.7E-24 192.8 22.3 240 489-734 75-330 (330)
17 3v47_A TOLL-like receptor 5B a 99.8 7.5E-20 2.6E-24 205.9 19.3 247 489-739 53-387 (455)
18 3zyi_A Leucine-rich repeat-con 99.8 1.5E-19 5E-24 203.2 20.7 222 489-714 74-305 (452)
19 2id5_A Lingo-1, leucine rich r 99.8 1.2E-19 4E-24 205.6 20.1 244 489-736 79-333 (477)
20 2id5_A Lingo-1, leucine rich r 99.8 1.9E-19 6.6E-24 203.8 21.3 246 489-739 31-312 (477)
21 3v47_A TOLL-like receptor 5B a 99.8 2.5E-19 8.5E-24 201.6 21.4 245 489-737 78-409 (455)
22 4eco_A Uncharacterized protein 99.8 2E-20 6.9E-25 219.0 12.4 231 506-739 202-473 (636)
23 3zyi_A Leucine-rich repeat-con 99.8 3.4E-19 1.2E-23 200.2 21.9 240 492-736 56-303 (452)
24 3zyj_A Leucine-rich repeat-con 99.8 3.5E-19 1.2E-23 199.3 21.1 222 489-714 63-294 (440)
25 2ft3_A Biglycan; proteoglycan, 99.8 3.3E-19 1.1E-23 191.7 20.0 239 489-736 53-307 (332)
26 3zyj_A Leucine-rich repeat-con 99.8 4.6E-19 1.6E-23 198.4 21.3 239 492-736 45-292 (440)
27 4ecn_A Leucine-rich repeat pro 99.8 5.2E-20 1.8E-24 219.6 13.2 181 508-692 446-664 (876)
28 2ft3_A Biglycan; proteoglycan, 99.8 5.3E-19 1.8E-23 190.1 19.7 239 489-734 77-331 (332)
29 4eco_A Uncharacterized protein 99.8 2.7E-19 9.4E-24 209.4 18.3 240 489-738 329-602 (636)
30 3t6q_A CD180 antigen; protein- 99.8 4.3E-19 1.5E-23 207.3 19.5 247 489-739 277-539 (606)
31 2z66_A Variable lymphocyte rec 99.8 2.5E-19 8.5E-24 190.3 15.9 192 490-683 28-234 (306)
32 3o6n_A APL1; leucine-rich repe 99.8 1.1E-18 3.8E-23 192.1 20.2 240 489-738 68-333 (390)
33 3oja_B Anopheles plasmodium-re 99.8 6.3E-19 2.1E-23 205.1 19.0 242 489-738 74-339 (597)
34 4fmz_A Internalin; leucine ric 99.8 1.4E-18 4.9E-23 187.9 20.1 238 489-738 87-326 (347)
35 4ecn_A Leucine-rich repeat pro 99.8 9.7E-19 3.3E-23 208.7 20.4 244 489-740 514-823 (876)
36 1ozn_A Reticulon 4 receptor; N 99.8 1.3E-18 4.3E-23 182.8 18.8 193 489-683 31-236 (285)
37 4fmz_A Internalin; leucine ric 99.8 2.8E-18 9.7E-23 185.6 22.0 234 489-737 65-301 (347)
38 1ozn_A Reticulon 4 receptor; N 99.8 2.1E-18 7.1E-23 181.2 19.6 217 493-714 14-240 (285)
39 3t6q_A CD180 antigen; protein- 99.8 1.3E-18 4.3E-23 203.4 18.8 252 482-737 292-561 (606)
40 2z66_A Variable lymphocyte rec 99.8 8.8E-19 3E-23 186.1 15.5 240 494-738 11-263 (306)
41 2z80_A TOLL-like receptor 2, v 99.8 9.2E-19 3.1E-23 190.0 15.6 238 495-736 36-314 (353)
42 3oja_B Anopheles plasmodium-re 99.8 2.9E-18 9.9E-23 199.5 20.2 238 486-736 94-358 (597)
43 3j0a_A TOLL-like receptor 5; m 99.8 5.7E-18 2E-22 205.0 22.0 248 489-739 47-378 (844)
44 2z7x_B TOLL-like receptor 1, v 99.8 1.5E-18 5.2E-23 198.7 15.6 99 490-590 21-125 (520)
45 2z80_A TOLL-like receptor 2, v 99.8 1.1E-18 3.8E-23 189.3 13.0 223 489-716 51-318 (353)
46 2z7x_B TOLL-like receptor 1, v 99.8 4.4E-18 1.5E-22 194.9 18.6 112 627-739 326-460 (520)
47 3o6n_A APL1; leucine-rich repe 99.8 1.2E-17 4.2E-22 183.7 21.4 236 489-737 92-353 (390)
48 2z62_A TOLL-like receptor 4, v 99.8 5.6E-18 1.9E-22 177.0 17.6 195 489-685 27-237 (276)
49 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 4.3E-18 1.5E-22 196.8 18.2 101 489-591 51-157 (562)
50 2o6q_A Variable lymphocyte rec 99.8 1.3E-17 4.4E-22 173.6 19.7 191 491-683 17-216 (270)
51 1p9a_G Platelet glycoprotein I 99.8 1.4E-17 4.6E-22 175.1 19.0 191 489-684 9-207 (290)
52 3vq2_A TLR4, TOLL-like recepto 99.8 4.7E-18 1.6E-22 198.5 16.9 244 489-739 284-537 (606)
53 2z81_A CD282 antigen, TOLL-lik 99.8 1.6E-18 5.6E-23 199.9 12.6 126 490-615 26-160 (549)
54 3vq2_A TLR4, TOLL-like recepto 99.8 2.2E-17 7.4E-22 192.9 21.8 128 489-616 31-166 (606)
55 1ziw_A TOLL-like receptor 3; i 99.8 2.6E-17 8.9E-22 195.0 22.6 245 489-734 48-364 (680)
56 3g06_A SSPH2 (leucine-rich rep 99.7 4.3E-17 1.5E-21 188.2 23.0 221 490-738 61-299 (622)
57 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 2.4E-17 8.4E-22 190.5 20.0 83 602-684 352-440 (562)
58 3bz5_A Internalin-J, INLJ; leu 99.7 6.5E-17 2.2E-21 181.1 22.7 226 489-734 63-297 (457)
59 1h6u_A Internalin H; cell adhe 99.7 1.7E-17 5.8E-22 176.1 16.9 186 489-683 40-228 (308)
60 3bz5_A Internalin-J, INLJ; leu 99.7 6E-17 2E-21 181.5 22.2 236 489-738 84-354 (457)
61 1o6v_A Internalin A; bacterial 99.7 3.8E-17 1.3E-21 184.2 20.7 240 489-738 67-346 (466)
62 1wwl_A Monocyte differentiatio 99.7 9.1E-19 3.1E-23 186.4 6.5 238 489-737 42-310 (312)
63 2z81_A CD282 antigen, TOLL-lik 99.7 3.8E-18 1.3E-22 196.8 11.6 111 489-599 49-167 (549)
64 2js7_A Myeloid differentiation 99.7 5.6E-19 1.9E-23 165.9 3.5 101 19-121 11-116 (160)
65 1fyx_A TOLL-like receptor 2; b 99.7 3.3E-19 1.1E-23 165.7 1.6 97 21-119 2-103 (149)
66 1wwl_A Monocyte differentiatio 99.7 5.1E-18 1.8E-22 180.6 10.9 190 489-683 94-307 (312)
67 3rfs_A Internalin B, repeat mo 99.7 1.8E-17 6.3E-22 172.6 14.8 173 489-685 40-218 (272)
68 3j0a_A TOLL-like receptor 5; m 99.7 3.7E-17 1.3E-21 197.9 19.7 247 489-738 23-329 (844)
69 2z62_A TOLL-like receptor 4, v 99.7 5.7E-17 1.9E-21 169.3 17.7 214 496-715 13-240 (276)
70 3o53_A Protein LRIM1, AGAP0063 99.7 4.5E-18 1.5E-22 181.5 9.2 228 489-731 33-270 (317)
71 3oja_A Leucine-rich immune mol 99.7 1.2E-17 4.1E-22 188.8 13.0 228 489-730 33-269 (487)
72 1p9a_G Platelet glycoprotein I 99.7 7.8E-17 2.7E-21 169.3 18.3 199 507-715 7-211 (290)
73 2j67_A TOLL like receptor 10; 99.7 1.2E-18 4E-23 166.2 3.9 99 19-119 30-133 (178)
74 3rfs_A Internalin B, repeat mo 99.7 2.3E-17 7.9E-22 171.8 14.0 191 530-735 38-234 (272)
75 2xwt_C Thyrotropin receptor; s 99.7 1.8E-17 6.1E-22 169.1 12.4 188 490-683 31-237 (239)
76 2o6q_A Variable lymphocyte rec 99.7 2.6E-16 8.9E-21 163.7 20.4 199 509-715 15-221 (270)
77 1o6v_A Internalin A; bacterial 99.7 1.3E-16 4.4E-21 179.9 19.3 214 510-739 177-391 (466)
78 2z63_A TOLL-like receptor 4, v 99.7 1.4E-16 4.8E-21 184.5 19.7 126 489-615 27-161 (570)
79 2z63_A TOLL-like receptor 4, v 99.7 5.6E-17 1.9E-21 187.9 15.8 241 489-737 281-532 (570)
80 3o53_A Protein LRIM1, AGAP0063 99.7 3.2E-17 1.1E-21 174.9 12.5 188 489-685 57-250 (317)
81 1t3g_A X-linked interleukin-1 99.7 5.8E-18 2E-22 158.8 5.8 100 23-122 1-114 (159)
82 1ziw_A TOLL-like receptor 3; i 99.7 2.6E-16 9E-21 186.3 21.2 245 489-736 24-309 (680)
83 3m19_A Variable lymphocyte rec 99.7 2.2E-16 7.5E-21 162.3 17.5 171 510-684 14-191 (251)
84 1jl5_A Outer protein YOPM; leu 99.7 5.4E-16 1.9E-20 173.5 21.9 230 489-740 110-354 (454)
85 3g06_A SSPH2 (leucine-rich rep 99.7 6E-16 2.1E-20 178.6 21.9 220 490-739 40-277 (622)
86 3cvr_A Invasion plasmid antige 99.7 1.8E-16 6.1E-21 180.8 17.1 181 491-690 60-248 (571)
87 1jl5_A Outer protein YOPM; leu 99.7 8.2E-16 2.8E-20 172.0 21.9 227 489-737 152-410 (454)
88 3oja_A Leucine-rich immune mol 99.7 1.4E-16 4.9E-21 180.0 14.3 215 507-736 31-250 (487)
89 4ay9_X Follicle-stimulating ho 99.7 2.2E-16 7.5E-21 170.8 14.8 195 494-690 13-219 (350)
90 4glp_A Monocyte differentiatio 99.7 1.1E-16 3.7E-21 170.2 10.3 169 510-682 91-282 (310)
91 1h6u_A Internalin H; cell adhe 99.7 1.6E-15 5.3E-20 160.9 18.4 194 506-713 37-231 (308)
92 2xwt_C Thyrotropin receptor; s 99.7 3E-16 1E-20 160.0 11.7 187 502-690 23-222 (239)
93 1h6t_A Internalin B; cell adhe 99.7 8.9E-16 3E-20 161.3 15.2 167 508-683 44-211 (291)
94 3m19_A Variable lymphocyte rec 99.6 2.2E-15 7.6E-20 154.8 17.4 171 491-663 15-194 (251)
95 2ast_B S-phase kinase-associat 99.6 2.6E-17 8.9E-22 177.1 1.9 193 490-682 70-282 (336)
96 4g8a_A TOLL-like receptor 4; l 99.6 3E-15 1E-19 175.5 18.9 123 490-613 52-183 (635)
97 2ast_B S-phase kinase-associat 99.6 1.3E-16 4.5E-21 171.6 4.5 241 492-738 49-308 (336)
98 1m9s_A Internalin B; cell inva 99.6 7.1E-16 2.4E-20 177.8 10.6 167 508-683 41-208 (605)
99 3cvr_A Invasion plasmid antige 99.6 2.1E-15 7.2E-20 171.9 14.1 170 489-673 79-255 (571)
100 4ezg_A Putative uncharacterize 99.6 1.7E-15 5.9E-20 149.4 10.8 150 508-683 42-192 (197)
101 1h6t_A Internalin B; cell adhe 99.6 3.8E-15 1.3E-19 156.5 14.1 166 489-661 45-213 (291)
102 4glp_A Monocyte differentiatio 99.6 2E-15 6.9E-20 160.4 12.1 218 511-737 65-308 (310)
103 1xeu_A Internalin C; cellular 99.6 2.9E-15 9.8E-20 154.9 12.6 166 508-683 17-183 (263)
104 4ay9_X Follicle-stimulating ho 99.6 5.1E-15 1.7E-19 160.1 13.7 205 483-692 24-243 (350)
105 2o6s_A Variable lymphocyte rec 99.6 1.6E-14 5.3E-19 143.9 14.2 169 495-693 12-186 (208)
106 1m9s_A Internalin B; cell inva 99.6 1.5E-14 5E-19 166.9 13.7 167 489-662 42-211 (605)
107 2o6s_A Variable lymphocyte rec 99.5 2.9E-14 1E-18 141.9 12.9 176 513-724 10-190 (208)
108 4ezg_A Putative uncharacterize 99.5 2.2E-14 7.4E-19 141.5 11.5 153 529-712 40-194 (197)
109 4g8a_A TOLL-like receptor 4; l 99.5 3.4E-14 1.1E-18 166.6 14.8 224 489-714 348-582 (635)
110 3e6j_A Variable lymphocyte rec 99.5 6.5E-14 2.2E-18 141.5 15.0 147 512-684 21-171 (229)
111 2v9t_B SLIT homolog 2 protein 99.5 8.4E-14 2.9E-18 139.7 14.2 146 513-683 14-163 (220)
112 2xot_A Amphoterin-induced prot 99.5 3.3E-14 1.1E-18 154.3 11.6 166 493-660 21-201 (361)
113 1xeu_A Internalin C; cellular 99.5 2.7E-14 9.2E-19 147.6 9.7 164 491-662 20-186 (263)
114 2ca6_A RAN GTPase-activating p 99.5 3.4E-15 1.2E-19 163.9 2.8 225 489-715 31-319 (386)
115 2qen_A Walker-type ATPase; unk 99.5 5.6E-13 1.9E-17 144.0 20.0 261 168-446 32-349 (350)
116 2ca6_A RAN GTPase-activating p 99.5 3.9E-15 1.3E-19 163.4 2.9 231 507-739 29-319 (386)
117 2v70_A SLIT-2, SLIT homolog 2 99.5 1.1E-13 3.8E-18 138.8 13.2 146 513-683 14-164 (220)
118 2v70_A SLIT-2, SLIT homolog 2 99.5 3E-13 1E-17 135.6 14.9 148 493-663 14-168 (220)
119 2xot_A Amphoterin-induced prot 99.5 1.7E-13 5.7E-18 148.8 13.2 166 514-683 22-200 (361)
120 1dce_A Protein (RAB geranylger 99.5 1.3E-15 4.6E-20 174.5 -4.2 179 507-690 346-550 (567)
121 2v9t_B SLIT homolog 2 protein 99.4 5.7E-13 2E-17 133.6 14.1 145 493-661 14-165 (220)
122 2fna_A Conserved hypothetical 99.4 2.4E-12 8.2E-17 139.3 20.0 263 168-445 31-356 (357)
123 3e6j_A Variable lymphocyte rec 99.4 8.6E-13 2.9E-17 133.2 15.3 149 492-663 21-174 (229)
124 3goz_A Leucine-rich repeat-con 99.4 2.7E-14 9.4E-19 155.1 4.5 194 489-683 21-264 (362)
125 3goz_A Leucine-rich repeat-con 99.4 1.5E-14 5.1E-19 157.2 2.2 243 494-738 2-299 (362)
126 1z7x_W Ribonuclease inhibitor; 99.4 3E-15 1E-19 168.5 -4.3 34 511-544 86-124 (461)
127 1z7x_W Ribonuclease inhibitor; 99.4 7E-15 2.4E-19 165.5 -1.6 245 489-738 27-328 (461)
128 1w5s_A Origin recognition comp 99.4 3.3E-12 1.1E-16 141.3 19.6 253 168-430 51-371 (412)
129 4b8c_D Glucose-repressible alc 99.4 8.4E-14 2.9E-18 164.6 4.1 184 489-682 172-369 (727)
130 2ell_A Acidic leucine-rich nuc 99.4 7.5E-13 2.6E-17 126.7 9.5 79 510-589 24-104 (168)
131 4b8c_D Glucose-repressible alc 99.4 2.7E-13 9.3E-18 160.3 6.4 169 506-683 220-402 (727)
132 1dce_A Protein (RAB geranylger 99.4 2.6E-14 9E-19 163.7 -2.9 186 489-679 348-567 (567)
133 2ell_A Acidic leucine-rich nuc 99.4 2.4E-12 8.2E-17 123.2 10.8 133 532-690 23-164 (168)
134 2wfh_A SLIT homolog 2 protein 99.3 1.9E-11 6.6E-16 119.7 13.7 121 493-614 13-137 (193)
135 2je0_A Acidic leucine-rich nuc 99.3 3.5E-12 1.2E-16 119.3 7.4 123 533-680 17-148 (149)
136 1w8a_A SLIT protein; signaling 99.3 1.8E-11 6.1E-16 119.8 12.6 122 493-614 11-137 (192)
137 2je0_A Acidic leucine-rich nuc 99.3 6.4E-12 2.2E-16 117.5 8.7 112 555-690 16-130 (149)
138 1w8a_A SLIT protein; signaling 99.3 2.6E-11 8.8E-16 118.7 12.3 76 513-590 11-88 (192)
139 2qby_B CDC6 homolog 3, cell di 99.3 5.2E-10 1.8E-14 122.2 23.9 249 167-430 45-339 (384)
140 1a9n_A U2A', U2A'; complex (nu 99.2 1.5E-11 5E-16 118.7 8.2 126 531-683 17-151 (176)
141 1a9n_A U2A', U2A'; complex (nu 99.2 2.2E-11 7.5E-16 117.4 9.2 114 550-690 13-130 (176)
142 2wfh_A SLIT homolog 2 protein 99.2 1.2E-10 4E-15 114.0 12.0 74 513-589 13-87 (193)
143 2o6r_A Variable lymphocyte rec 99.2 1.8E-10 6.1E-15 111.1 13.1 121 493-614 10-135 (177)
144 2qby_A CDC6 homolog 1, cell di 99.2 1.1E-09 3.8E-14 119.6 20.9 253 167-430 45-348 (386)
145 2o6r_A Variable lymphocyte rec 99.2 1.8E-10 6.3E-15 111.0 12.8 126 512-663 9-139 (177)
146 1ds9_A Outer arm dynein; leuci 99.1 9.8E-13 3.4E-17 129.6 -4.4 146 529-678 14-180 (198)
147 3ogk_B Coronatine-insensitive 99.1 2.3E-11 8E-16 141.2 5.4 243 489-736 191-501 (592)
148 3sb4_A Hypothetical leucine ri 99.1 4.2E-10 1.4E-14 120.2 12.3 228 490-729 49-327 (329)
149 1fnn_A CDC6P, cell division co 99.1 7.2E-09 2.5E-13 113.3 21.7 275 167-452 44-387 (389)
150 3ogk_B Coronatine-insensitive 99.1 6.2E-11 2.1E-15 137.6 4.8 123 530-656 217-350 (592)
151 3sb4_A Hypothetical leucine ri 99.0 4.6E-10 1.6E-14 119.9 10.2 73 492-565 74-157 (329)
152 2v1u_A Cell division control p 99.0 1.4E-08 4.8E-13 110.9 21.0 253 167-430 44-351 (387)
153 1njg_A DNA polymerase III subu 99.0 6.2E-09 2.1E-13 105.5 15.2 171 168-345 46-230 (250)
154 2p1m_B Transport inhibitor res 99.0 8.5E-11 2.9E-15 136.5 0.9 121 490-610 105-242 (594)
155 3g39_A Variable lymphocyte rec 98.9 2.6E-09 9E-14 102.0 10.8 100 511-614 10-113 (170)
156 2r9u_A Variable lymphocyte rec 98.9 3.3E-09 1.1E-13 101.7 11.0 99 512-614 14-116 (174)
157 1ds9_A Outer arm dynein; leuci 98.9 3.6E-11 1.2E-15 118.3 -3.1 123 558-684 25-152 (198)
158 2p1m_B Transport inhibitor res 98.9 5.3E-11 1.8E-15 138.2 -2.5 192 489-682 65-324 (594)
159 3g39_A Variable lymphocyte rec 98.9 4.7E-09 1.6E-13 100.3 10.5 99 492-591 11-113 (170)
160 2r9u_A Variable lymphocyte rec 98.9 8.8E-09 3E-13 98.7 10.7 103 493-597 15-121 (174)
161 4fdw_A Leucine rich hypothetic 98.8 5.8E-08 2E-12 106.1 17.7 211 511-738 136-360 (401)
162 4fdw_A Leucine rich hypothetic 98.8 1.2E-07 4.1E-12 103.6 18.5 227 491-734 136-381 (401)
163 2chg_A Replication factor C sm 98.7 5.4E-08 1.8E-12 97.0 12.8 161 169-343 40-204 (226)
164 3un9_A NLR family member X1; l 98.7 1E-09 3.5E-14 118.9 -3.5 103 489-591 71-194 (372)
165 2ifg_A High affinity nerve gro 98.7 4.6E-08 1.6E-12 105.1 9.5 99 514-614 12-114 (347)
166 3un9_A NLR family member X1; l 98.6 4.6E-09 1.6E-13 113.7 -1.2 151 508-660 70-251 (372)
167 1sxj_B Activator 1 37 kDa subu 98.5 3E-07 1E-11 97.5 11.9 159 169-343 44-210 (323)
168 2ra8_A Uncharacterized protein 98.5 6.9E-08 2.3E-12 103.6 4.3 88 525-614 164-263 (362)
169 1iqp_A RFCS; clamp loader, ext 98.4 1.7E-06 5.9E-11 91.7 14.7 156 169-343 48-212 (327)
170 2ifg_A High affinity nerve gro 98.4 4E-07 1.4E-11 97.7 9.7 102 536-639 11-117 (347)
171 1hqc_A RUVB; extended AAA-ATPa 98.4 9.2E-06 3.1E-10 86.0 18.4 229 167-433 38-301 (324)
172 2ra8_A Uncharacterized protein 98.3 2.6E-07 8.8E-12 99.1 4.1 154 526-683 132-318 (362)
173 3bos_A Putative DNA replicatio 98.3 9.1E-07 3.1E-11 89.3 7.7 151 167-343 52-217 (242)
174 2z4s_A Chromosomal replication 98.3 2.8E-06 9.5E-11 93.8 11.2 158 167-340 130-303 (440)
175 2chq_A Replication factor C sm 98.2 1.5E-05 5.2E-10 84.0 15.3 154 169-341 40-202 (319)
176 1jr3_A DNA polymerase III subu 98.2 7.7E-06 2.6E-10 88.5 12.9 165 168-343 39-221 (373)
177 1d2n_A N-ethylmaleimide-sensit 98.1 5.2E-05 1.8E-09 78.0 16.9 145 167-335 64-229 (272)
178 3pfi_A Holliday junction ATP-d 98.1 7.3E-05 2.5E-09 79.6 17.5 230 167-436 55-319 (338)
179 1l8q_A Chromosomal replication 98.1 1.8E-05 6.2E-10 83.8 12.0 153 167-338 37-203 (324)
180 3h4m_A Proteasome-activating n 98.0 1E-05 3.4E-10 84.0 8.3 153 167-340 51-228 (285)
181 1sxj_D Activator 1 41 kDa subu 98.0 0.00021 7.3E-09 76.3 18.6 165 170-341 61-233 (353)
182 3eie_A Vacuolar protein sortin 98.0 0.0001 3.6E-09 77.7 15.8 156 167-342 51-227 (322)
183 1a5t_A Delta prime, HOLB; zinc 97.9 7.2E-05 2.5E-09 79.4 14.0 152 167-343 24-205 (334)
184 1sxj_A Activator 1 95 kDa subu 97.9 5.8E-05 2E-09 85.2 13.7 165 167-343 77-253 (516)
185 2qp9_X Vacuolar protein sortin 97.9 0.00017 5.8E-09 77.2 16.2 157 167-343 84-261 (355)
186 2qz4_A Paraplegin; AAA+, SPG7, 97.9 4.8E-05 1.7E-09 77.6 11.5 152 167-337 39-215 (262)
187 3syl_A Protein CBBX; photosynt 97.9 9E-05 3.1E-09 77.7 13.6 128 167-312 67-218 (309)
188 3uk6_A RUVB-like 2; hexameric 97.9 0.00026 8.8E-09 76.3 17.5 92 244-341 190-301 (368)
189 3te6_A Regulatory protein SIR3 97.9 0.0002 6.9E-09 74.5 15.1 139 167-312 45-212 (318)
190 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00011 3.8E-09 77.5 13.4 157 167-343 45-223 (322)
191 1sxj_E Activator 1 40 kDa subu 97.8 0.00017 5.9E-09 77.2 14.3 99 242-342 133-236 (354)
192 2zan_A Vacuolar protein sortin 97.8 0.00041 1.4E-08 76.5 17.0 157 167-342 167-344 (444)
193 3ec2_A DNA replication protein 97.8 4.8E-05 1.6E-09 72.8 8.2 98 167-281 38-143 (180)
194 3cf0_A Transitional endoplasmi 97.8 0.00038 1.3E-08 72.6 15.5 127 167-311 49-199 (301)
195 1jbk_A CLPB protein; beta barr 97.7 5E-05 1.7E-09 73.1 7.9 125 167-307 43-194 (195)
196 3e4g_A ATP synthase subunit S, 97.7 7.1E-06 2.4E-10 77.3 1.5 84 534-617 62-153 (176)
197 3d8b_A Fidgetin-like protein 1 97.7 0.00012 4E-09 78.5 11.3 157 167-344 117-296 (357)
198 2w58_A DNAI, primosome compone 97.7 6.8E-05 2.3E-09 73.2 8.6 97 168-281 55-159 (202)
199 3pvs_A Replication-associated 97.7 0.0001 3.5E-09 81.2 10.8 152 167-340 50-212 (447)
200 4fs7_A Uncharacterized protein 97.7 0.00087 3E-08 72.8 18.2 52 489-542 70-126 (394)
201 3vfd_A Spastin; ATPase, microt 97.6 0.00036 1.2E-08 75.7 12.5 157 167-343 148-326 (389)
202 3e4g_A ATP synthase subunit S, 97.5 1.7E-05 5.8E-10 74.7 1.1 68 529-596 81-155 (176)
203 1sxj_C Activator 1 40 kDa subu 97.5 0.0012 3.9E-08 70.3 15.5 154 170-339 49-208 (340)
204 3b9p_A CG5977-PA, isoform A; A 97.5 0.00021 7.3E-09 74.4 9.2 155 167-342 54-232 (297)
205 4fs7_A Uncharacterized protein 97.5 0.0014 4.8E-08 71.1 15.3 206 508-733 160-376 (394)
206 3u61_B DNA polymerase accessor 97.5 0.0012 4E-08 69.6 14.2 152 167-338 48-211 (324)
207 1in4_A RUVB, holliday junction 97.5 0.0027 9.4E-08 67.1 17.1 232 167-437 51-317 (334)
208 4b4t_J 26S protease regulatory 97.5 0.0015 5E-08 69.8 14.7 148 167-336 182-354 (405)
209 4gt6_A Cell surface protein; l 97.4 0.003 1E-07 68.5 17.4 80 506-589 83-169 (394)
210 2kjq_A DNAA-related protein; s 97.4 0.00025 8.7E-09 65.3 6.9 36 167-202 36-71 (149)
211 3rw6_A Nuclear RNA export fact 97.4 0.00011 3.7E-09 74.6 4.7 76 510-586 170-257 (267)
212 1io0_A Tropomodulin; LRR prote 97.4 5.5E-05 1.9E-09 72.8 2.3 109 552-683 32-162 (185)
213 3hu3_A Transitional endoplasmi 97.3 0.00082 2.8E-08 74.7 11.6 129 167-312 238-386 (489)
214 1io0_A Tropomodulin; LRR prote 97.3 9E-05 3.1E-09 71.3 2.7 84 529-613 61-161 (185)
215 4b4t_L 26S protease subunit RP 97.2 0.0031 1E-07 68.5 14.3 147 167-336 215-387 (437)
216 1lv7_A FTSH; alpha/beta domain 97.2 0.00067 2.3E-08 68.9 8.6 126 168-311 46-195 (257)
217 4fcw_A Chaperone protein CLPB; 97.2 0.0015 5.1E-08 68.3 11.4 27 167-193 47-73 (311)
218 2p65_A Hypothetical protein PF 97.2 0.0008 2.7E-08 64.2 8.5 27 167-193 43-69 (187)
219 4b4t_H 26S protease regulatory 97.2 0.00038 1.3E-08 75.3 6.3 148 167-336 243-415 (467)
220 4b4t_M 26S protease regulatory 97.2 0.00044 1.5E-08 75.0 6.8 146 167-335 215-386 (434)
221 2gno_A DNA polymerase III, gam 97.1 0.00092 3.2E-08 69.5 8.9 129 167-311 18-152 (305)
222 3rw6_A Nuclear RNA export fact 97.1 0.00035 1.2E-08 70.9 5.2 79 577-679 167-258 (267)
223 3t15_A Ribulose bisphosphate c 97.1 0.0027 9.4E-08 65.7 12.0 27 167-193 36-62 (293)
224 4b4t_K 26S protease regulatory 97.1 0.00053 1.8E-08 74.3 6.4 29 167-195 206-234 (428)
225 3n70_A Transport activator; si 97.0 0.0014 4.8E-08 59.9 8.0 87 170-281 27-116 (145)
226 1ofh_A ATP-dependent HSL prote 97.0 0.0067 2.3E-07 63.2 14.0 26 167-192 50-75 (310)
227 4gt6_A Cell surface protein; l 97.0 0.0089 3.1E-07 64.7 15.2 98 510-612 64-169 (394)
228 2bjv_A PSP operon transcriptio 97.0 0.0056 1.9E-07 62.2 12.7 24 169-192 31-54 (265)
229 2ce7_A Cell division protein F 97.0 0.0028 9.6E-08 69.8 11.0 146 169-336 51-221 (476)
230 4b4t_I 26S protease regulatory 97.0 0.00066 2.3E-08 72.7 5.6 146 167-335 216-387 (437)
231 2qgz_A Helicase loader, putati 96.9 0.00048 1.7E-08 71.9 4.4 36 167-202 152-188 (308)
232 1ixz_A ATP-dependent metallopr 96.9 0.0054 1.9E-07 61.9 11.4 124 170-311 52-199 (254)
233 1iy2_A ATP-dependent metallopr 96.7 0.0096 3.3E-07 61.0 12.3 124 170-311 76-223 (278)
234 2r62_A Cell division protease 96.7 0.00064 2.2E-08 69.5 3.0 126 169-311 46-196 (268)
235 2x8a_A Nuclear valosin-contain 96.7 0.01 3.6E-07 60.6 12.0 124 170-311 47-191 (274)
236 3pxg_A Negative regulator of g 96.6 0.013 4.5E-07 64.9 12.5 123 168-311 202-338 (468)
237 3cf2_A TER ATPase, transitiona 96.5 0.0038 1.3E-07 72.9 8.1 148 167-336 238-407 (806)
238 2c9o_A RUVB-like 1; hexameric 96.4 0.019 6.4E-07 63.5 12.9 90 245-340 297-407 (456)
239 1ojl_A Transcriptional regulat 96.4 0.016 5.4E-07 60.2 11.6 23 169-191 27-49 (304)
240 3pxi_A Negative regulator of g 96.4 0.015 5.1E-07 68.8 12.8 126 168-311 522-675 (758)
241 1g5t_A COB(I)alamin adenosyltr 96.4 0.0048 1.7E-07 58.8 6.9 128 169-297 30-179 (196)
242 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0028 9.4E-08 65.4 5.3 70 167-254 123-193 (331)
243 2dhr_A FTSH; AAA+ protein, hex 96.3 0.022 7.6E-07 63.1 12.7 121 170-311 67-214 (499)
244 1qvr_A CLPB protein; coiled co 96.3 0.011 3.7E-07 70.9 11.0 130 168-311 192-345 (854)
245 3co5_A Putative two-component 96.3 0.0025 8.4E-08 58.2 3.9 22 170-191 30-51 (143)
246 1ye8_A Protein THEP1, hypothet 96.2 0.074 2.5E-06 50.2 14.0 24 169-192 2-25 (178)
247 4h09_A Hypothetical leucine ri 96.2 0.037 1.3E-06 59.4 13.3 120 552-679 213-340 (379)
248 1r6b_X CLPA protein; AAA+, N-t 96.1 0.037 1.3E-06 65.5 13.8 127 167-311 207-362 (758)
249 3m6a_A ATP-dependent protease 96.0 0.0074 2.5E-07 68.2 6.8 136 167-311 108-266 (543)
250 2cvh_A DNA repair and recombin 96.0 0.012 4E-07 57.8 7.5 33 167-202 20-52 (220)
251 1jr3_D DNA polymerase III, del 95.9 0.11 3.7E-06 54.8 15.1 154 167-341 18-183 (343)
252 3pxi_A Negative regulator of g 95.8 0.042 1.5E-06 64.9 12.5 123 168-311 202-338 (758)
253 1um8_A ATP-dependent CLP prote 95.7 0.029 1E-06 60.2 9.7 26 167-192 72-97 (376)
254 1eiw_A Hypothetical protein MT 95.7 0.0059 2E-07 52.3 3.1 62 23-103 3-64 (111)
255 2orw_A Thymidine kinase; TMTK, 95.6 0.0056 1.9E-07 58.4 3.3 109 168-282 4-114 (184)
256 2w0m_A SSO2452; RECA, SSPF, un 95.6 0.027 9.1E-07 55.6 8.2 36 167-202 23-58 (235)
257 2eyu_A Twitching motility prot 95.6 0.011 3.9E-07 59.7 5.4 110 167-283 25-135 (261)
258 1qhx_A CPT, protein (chloramph 95.5 0.0065 2.2E-07 57.5 3.2 25 168-192 4-28 (178)
259 4a74_A DNA repair and recombin 95.5 0.044 1.5E-06 54.0 9.5 36 167-202 25-66 (231)
260 2b8t_A Thymidine kinase; deoxy 95.5 0.017 5.9E-07 56.6 6.2 106 167-282 12-127 (223)
261 2r44_A Uncharacterized protein 95.4 0.065 2.2E-06 56.3 10.7 26 169-194 48-73 (331)
262 3jvv_A Twitching mobility prot 95.3 0.0083 2.8E-07 63.6 3.4 110 167-284 123-234 (356)
263 1ypw_A Transitional endoplasmi 95.3 0.047 1.6E-06 64.7 10.1 127 167-311 238-385 (806)
264 3kb2_A SPBC2 prophage-derived 95.2 0.0099 3.4E-07 55.7 3.4 25 168-192 2-26 (173)
265 4gp7_A Metallophosphoesterase; 95.2 0.0098 3.4E-07 56.0 3.4 22 167-188 9-30 (171)
266 4h09_A Hypothetical leucine ri 95.0 0.2 6.8E-06 53.5 13.5 121 529-657 213-342 (379)
267 3trf_A Shikimate kinase, SK; a 95.0 0.012 4.1E-07 56.0 3.4 26 167-192 5-30 (185)
268 1qvr_A CLPB protein; coiled co 95.0 0.04 1.4E-06 66.0 8.5 25 168-192 589-613 (854)
269 3vaa_A Shikimate kinase, SK; s 95.0 0.013 4.4E-07 56.7 3.5 26 167-192 25-50 (199)
270 1r6b_X CLPA protein; AAA+, N-t 94.9 0.026 9E-07 66.7 6.8 24 168-191 489-512 (758)
271 3sr0_A Adenylate kinase; phosp 94.9 0.089 3.1E-06 50.9 9.2 88 169-262 2-94 (206)
272 3rfe_A Platelet glycoprotein I 94.8 0.033 1.1E-06 49.6 5.5 34 649-683 32-66 (130)
273 3lw7_A Adenylate kinase relate 94.8 0.013 4.6E-07 54.9 3.1 22 168-190 2-23 (179)
274 1nks_A Adenylate kinase; therm 94.8 0.028 9.5E-07 53.7 5.4 26 168-193 2-27 (194)
275 3hr8_A Protein RECA; alpha and 94.7 0.063 2.2E-06 56.6 8.3 36 167-202 61-96 (356)
276 1s96_A Guanylate kinase, GMP k 94.6 0.11 3.6E-06 50.9 9.2 26 167-192 16-41 (219)
277 1ly1_A Polynucleotide kinase; 94.6 0.019 6.5E-07 54.2 3.5 22 168-189 3-24 (181)
278 4eun_A Thermoresistant glucoki 94.5 0.23 8E-06 47.6 11.3 25 167-191 29-53 (200)
279 3iij_A Coilin-interacting nucl 94.5 0.017 5.7E-07 54.8 2.8 25 167-191 11-35 (180)
280 1kag_A SKI, shikimate kinase I 94.4 0.017 6E-07 54.1 2.8 25 168-192 5-29 (173)
281 1via_A Shikimate kinase; struc 94.4 0.018 6.3E-07 54.2 2.9 24 169-192 6-29 (175)
282 1zuh_A Shikimate kinase; alpha 94.4 0.023 7.7E-07 53.1 3.5 26 167-192 7-32 (168)
283 3uie_A Adenylyl-sulfate kinase 94.4 0.038 1.3E-06 53.4 5.1 26 167-192 25-50 (200)
284 2rhm_A Putative kinase; P-loop 94.4 0.025 8.7E-07 54.0 3.9 25 167-191 5-29 (193)
285 2ewv_A Twitching motility prot 94.3 0.087 3E-06 56.2 8.4 108 167-282 136-245 (372)
286 3cf2_A TER ATPase, transitiona 94.3 0.041 1.4E-06 64.3 6.2 127 167-311 511-661 (806)
287 3t61_A Gluconokinase; PSI-biol 94.3 0.019 6.6E-07 55.5 2.9 25 167-191 18-42 (202)
288 3rfe_A Platelet glycoprotein I 94.3 0.052 1.8E-06 48.2 5.5 52 514-567 12-66 (130)
289 2yvu_A Probable adenylyl-sulfa 94.3 0.04 1.4E-06 52.4 5.1 27 167-193 13-39 (186)
290 1u0j_A DNA replication protein 94.3 0.086 3E-06 52.8 7.6 26 165-190 102-127 (267)
291 1ex7_A Guanylate kinase; subst 94.3 0.016 5.5E-07 55.1 2.1 28 168-195 2-29 (186)
292 2ze6_A Isopentenyl transferase 94.3 0.025 8.4E-07 57.0 3.7 25 168-192 2-26 (253)
293 3ice_A Transcription terminati 94.2 0.02 7E-07 60.2 3.0 29 167-195 174-202 (422)
294 1zp6_A Hypothetical protein AT 94.2 0.024 8.2E-07 54.2 3.4 24 167-190 9-32 (191)
295 3dm5_A SRP54, signal recogniti 94.2 0.18 6.3E-06 54.5 10.6 28 167-194 100-127 (443)
296 3bh0_A DNAB-like replicative h 94.2 0.26 9E-06 51.1 11.6 36 167-202 68-103 (315)
297 2iyv_A Shikimate kinase, SK; t 94.2 0.021 7.3E-07 54.2 2.9 25 168-192 3-27 (184)
298 1kht_A Adenylate kinase; phosp 94.1 0.026 8.8E-07 53.9 3.4 26 168-193 4-29 (192)
299 1gvn_B Zeta; postsegregational 94.1 0.098 3.3E-06 53.6 7.9 25 167-191 33-57 (287)
300 2jaq_A Deoxyguanosine kinase; 94.1 0.026 8.8E-07 54.5 3.3 24 169-192 2-25 (205)
301 1e6c_A Shikimate kinase; phosp 94.0 0.025 8.7E-07 52.9 2.9 25 168-192 3-27 (173)
302 2plr_A DTMP kinase, probable t 93.9 0.051 1.8E-06 52.7 5.2 28 168-195 5-32 (213)
303 3io5_A Recombination and repai 93.9 0.1 3.4E-06 53.6 7.3 35 169-203 30-66 (333)
304 2vli_A Antibiotic resistance p 93.9 0.023 7.9E-07 53.8 2.5 26 167-192 5-30 (183)
305 2c95_A Adenylate kinase 1; tra 93.9 0.031 1E-06 53.6 3.3 25 167-191 9-33 (196)
306 1kgd_A CASK, peripheral plasma 93.8 0.03 1E-06 53.0 3.2 26 167-192 5-30 (180)
307 1sky_E F1-ATPase, F1-ATP synth 93.8 0.11 3.7E-06 56.5 7.8 30 168-197 152-181 (473)
308 1nn5_A Similar to deoxythymidy 93.8 0.048 1.7E-06 53.1 4.7 29 167-195 9-37 (215)
309 1knq_A Gluconate kinase; ALFA/ 93.8 0.037 1.3E-06 52.0 3.7 25 167-191 8-32 (175)
310 2bwj_A Adenylate kinase 5; pho 93.8 0.033 1.1E-06 53.5 3.5 26 167-192 12-37 (199)
311 1xjc_A MOBB protein homolog; s 93.8 0.058 2E-06 50.2 4.9 34 167-200 4-38 (169)
312 1tev_A UMP-CMP kinase; ploop, 93.8 0.037 1.3E-06 52.9 3.7 25 167-191 3-27 (196)
313 3cm0_A Adenylate kinase; ATP-b 93.7 0.037 1.3E-06 52.5 3.7 24 168-191 5-28 (186)
314 2pt7_A CAG-ALFA; ATPase, prote 93.7 0.077 2.6E-06 55.6 6.3 105 167-282 171-276 (330)
315 3fkq_A NTRC-like two-domain pr 93.7 0.15 5.1E-06 54.5 8.6 38 165-202 141-179 (373)
316 2pt5_A Shikimate kinase, SK; a 93.6 0.039 1.3E-06 51.4 3.5 24 169-192 2-25 (168)
317 2pjz_A Hypothetical protein ST 93.6 0.36 1.2E-05 48.5 10.8 23 168-190 31-53 (263)
318 3a00_A Guanylate kinase, GMP k 93.5 0.035 1.2E-06 52.9 3.1 28 168-195 2-29 (186)
319 1qf9_A UMP/CMP kinase, protein 93.5 0.042 1.4E-06 52.4 3.6 25 167-191 6-30 (194)
320 1y63_A LMAJ004144AAA protein; 93.5 0.039 1.3E-06 52.5 3.4 24 167-190 10-33 (184)
321 2qor_A Guanylate kinase; phosp 93.5 0.034 1.2E-06 53.9 2.9 26 167-192 12-37 (204)
322 3tau_A Guanylate kinase, GMP k 93.4 0.038 1.3E-06 53.8 3.2 26 167-192 8-33 (208)
323 2cdn_A Adenylate kinase; phosp 93.4 0.044 1.5E-06 52.9 3.6 26 167-192 20-45 (201)
324 4a1f_A DNAB helicase, replicat 93.4 0.29 9.8E-06 51.1 10.0 51 167-223 46-96 (338)
325 2wwf_A Thymidilate kinase, put 93.4 0.045 1.5E-06 53.2 3.7 28 167-194 10-37 (212)
326 2bdt_A BH3686; alpha-beta prot 93.4 0.044 1.5E-06 52.2 3.5 31 168-202 3-33 (189)
327 2px0_A Flagellar biosynthesis 93.3 0.062 2.1E-06 55.4 4.7 26 167-192 105-130 (296)
328 2z43_A DNA repair and recombin 93.3 0.17 5.6E-06 53.0 8.1 36 167-202 107-148 (324)
329 2if2_A Dephospho-COA kinase; a 93.3 0.043 1.5E-06 53.0 3.3 22 168-189 2-23 (204)
330 1cke_A CK, MSSA, protein (cyti 93.2 0.047 1.6E-06 53.7 3.5 24 168-191 6-29 (227)
331 3c8u_A Fructokinase; YP_612366 93.2 0.049 1.7E-06 52.9 3.6 26 167-192 22-47 (208)
332 1v5w_A DMC1, meiotic recombina 93.2 0.24 8.1E-06 52.2 9.1 37 166-202 121-163 (343)
333 2pbr_A DTMP kinase, thymidylat 93.2 0.049 1.7E-06 52.0 3.5 24 169-192 2-25 (195)
334 1ukz_A Uridylate kinase; trans 93.2 0.046 1.6E-06 52.8 3.3 25 167-191 15-39 (203)
335 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.049 1.7E-06 55.0 3.6 26 167-192 4-29 (260)
336 3ney_A 55 kDa erythrocyte memb 93.2 0.046 1.6E-06 52.3 3.2 26 167-192 19-44 (197)
337 3l0o_A Transcription terminati 93.0 0.16 5.5E-06 53.4 7.2 29 167-195 175-203 (427)
338 1gtv_A TMK, thymidylate kinase 93.0 0.038 1.3E-06 53.8 2.5 25 169-193 2-26 (214)
339 3tr0_A Guanylate kinase, GMP k 93.0 0.05 1.7E-06 52.5 3.2 24 168-191 8-31 (205)
340 2j41_A Guanylate kinase; GMP, 92.9 0.051 1.7E-06 52.5 3.2 25 167-191 6-30 (207)
341 1zd8_A GTP:AMP phosphotransfer 92.9 0.05 1.7E-06 53.7 3.1 25 167-191 7-31 (227)
342 1aky_A Adenylate kinase; ATP:A 92.9 0.054 1.8E-06 53.1 3.3 25 168-192 5-29 (220)
343 3umf_A Adenylate kinase; rossm 92.9 0.063 2.2E-06 52.4 3.7 25 167-191 29-53 (217)
344 3fwy_A Light-independent proto 92.8 0.093 3.2E-06 54.5 5.2 36 167-202 48-83 (314)
345 3nwj_A ATSK2; P loop, shikimat 92.8 0.049 1.7E-06 54.5 2.9 25 168-192 49-73 (250)
346 2qt1_A Nicotinamide riboside k 92.8 0.058 2E-06 52.3 3.4 24 167-190 21-44 (207)
347 2grj_A Dephospho-COA kinase; T 92.7 0.062 2.1E-06 51.4 3.4 25 166-190 11-35 (192)
348 1jjv_A Dephospho-COA kinase; P 92.7 0.058 2E-06 52.2 3.3 22 168-189 3-24 (206)
349 1zak_A Adenylate kinase; ATP:A 92.7 0.051 1.7E-06 53.4 2.9 25 168-192 6-30 (222)
350 1rz3_A Hypothetical protein rb 92.7 0.11 3.7E-06 50.1 5.2 26 167-192 22-47 (201)
351 2bbw_A Adenylate kinase 4, AK4 92.7 0.062 2.1E-06 53.7 3.5 25 167-191 27-51 (246)
352 3asz_A Uridine kinase; cytidin 92.7 0.073 2.5E-06 51.7 4.0 26 167-192 6-31 (211)
353 1uf9_A TT1252 protein; P-loop, 92.7 0.065 2.2E-06 51.6 3.6 24 167-190 8-31 (203)
354 3fb4_A Adenylate kinase; psych 92.6 0.065 2.2E-06 52.3 3.5 23 169-191 2-24 (216)
355 2j9r_A Thymidine kinase; TK1, 92.6 0.16 5.6E-06 48.9 6.2 111 167-283 28-140 (214)
356 3ch4_B Pmkase, phosphomevalona 92.6 0.36 1.2E-05 46.1 8.5 25 167-191 11-35 (202)
357 1pgv_A TMD-1, tropomodulin TMD 92.6 0.048 1.7E-06 52.1 2.4 56 627-682 100-167 (197)
358 2z0h_A DTMP kinase, thymidylat 92.5 0.07 2.4E-06 51.0 3.5 25 169-193 2-26 (197)
359 3bgw_A DNAB-like replicative h 92.5 0.43 1.5E-05 52.1 10.2 36 167-202 197-232 (444)
360 2ck3_D ATP synthase subunit be 92.5 0.26 8.8E-06 53.5 8.1 52 168-222 154-206 (482)
361 4e22_A Cytidylate kinase; P-lo 92.4 0.068 2.3E-06 53.7 3.3 26 167-192 27-52 (252)
362 1m7g_A Adenylylsulfate kinase; 92.3 0.081 2.8E-06 51.4 3.8 26 167-192 25-50 (211)
363 2dr3_A UPF0273 protein PH0284; 92.3 0.11 3.8E-06 51.6 4.9 36 167-202 23-58 (247)
364 1uj2_A Uridine-cytidine kinase 92.3 0.077 2.6E-06 53.3 3.7 26 167-192 22-47 (252)
365 3dl0_A Adenylate kinase; phosp 92.3 0.07 2.4E-06 52.1 3.3 23 169-191 2-24 (216)
366 3gmt_A Adenylate kinase; ssgci 92.3 0.27 9.1E-06 48.2 7.3 23 169-191 10-32 (230)
367 1lvg_A Guanylate kinase, GMP k 92.3 0.061 2.1E-06 51.8 2.8 25 168-192 5-29 (198)
368 2pez_A Bifunctional 3'-phospho 92.2 0.088 3E-06 49.6 3.7 26 167-192 5-30 (179)
369 3hjn_A DTMP kinase, thymidylat 92.2 0.3 1E-05 46.8 7.5 34 169-202 2-35 (197)
370 1odf_A YGR205W, hypothetical 3 92.1 0.087 3E-06 54.0 3.8 27 167-193 31-57 (290)
371 3d3q_A TRNA delta(2)-isopenten 92.1 0.082 2.8E-06 55.1 3.6 25 168-192 8-32 (340)
372 3e1s_A Exodeoxyribonuclease V, 92.1 0.18 6.1E-06 57.1 6.7 101 167-281 204-316 (574)
373 2v54_A DTMP kinase, thymidylat 92.1 0.076 2.6E-06 51.1 3.2 24 168-191 5-28 (204)
374 2i1q_A DNA repair and recombin 92.0 0.29 9.8E-06 51.0 7.9 24 167-190 98-121 (322)
375 3ake_A Cytidylate kinase; CMP 92.0 0.088 3E-06 50.8 3.6 24 169-192 4-27 (208)
376 1tue_A Replication protein E1; 92.0 0.074 2.5E-06 50.9 2.9 27 167-193 58-84 (212)
377 3be4_A Adenylate kinase; malar 92.0 0.084 2.9E-06 51.6 3.4 24 168-191 6-29 (217)
378 3r20_A Cytidylate kinase; stru 92.0 0.087 3E-06 51.9 3.4 26 167-192 9-34 (233)
379 3tlx_A Adenylate kinase 2; str 91.9 0.093 3.2E-06 52.3 3.7 25 167-191 29-53 (243)
380 3crm_A TRNA delta(2)-isopenten 91.9 0.081 2.8E-06 54.8 3.3 24 168-191 6-29 (323)
381 2p5t_B PEZT; postsegregational 91.9 0.074 2.5E-06 53.5 2.9 26 167-192 32-57 (253)
382 1ak2_A Adenylate kinase isoenz 91.9 0.085 2.9E-06 52.2 3.4 26 167-192 16-41 (233)
383 1np6_A Molybdopterin-guanine d 91.9 0.15 5.2E-06 47.8 4.9 27 167-193 6-32 (174)
384 3a8t_A Adenylate isopentenyltr 91.7 0.067 2.3E-06 55.6 2.4 25 167-191 40-64 (339)
385 1fx0_B ATP synthase beta chain 91.7 0.33 1.1E-05 52.8 7.9 52 168-222 166-218 (498)
386 3zvl_A Bifunctional polynucleo 91.7 0.33 1.1E-05 52.6 8.1 25 167-191 258-282 (416)
387 1e4v_A Adenylate kinase; trans 91.7 0.1 3.4E-06 50.9 3.6 23 169-191 2-24 (214)
388 1vma_A Cell division protein F 91.6 0.16 5.4E-06 52.5 5.1 35 167-201 104-138 (306)
389 2xb4_A Adenylate kinase; ATP-b 91.6 0.1 3.5E-06 51.3 3.5 23 169-191 2-24 (223)
390 2r6a_A DNAB helicase, replicat 91.6 0.89 3E-05 49.8 11.5 36 167-202 203-239 (454)
391 1vht_A Dephospho-COA kinase; s 91.5 0.1 3.5E-06 50.9 3.5 23 167-189 4-26 (218)
392 2wsm_A Hydrogenase expression/ 91.5 0.16 5.5E-06 49.5 4.9 28 167-194 30-57 (221)
393 2jeo_A Uridine-cytidine kinase 91.5 0.096 3.3E-06 52.3 3.3 25 167-191 25-49 (245)
394 3p32_A Probable GTPase RV1496/ 91.5 0.39 1.3E-05 50.8 8.2 28 166-193 78-105 (355)
395 2ehv_A Hypothetical protein PH 91.5 0.15 5E-06 50.8 4.7 36 167-202 30-66 (251)
396 3aez_A Pantothenate kinase; tr 91.4 0.097 3.3E-06 54.3 3.3 26 167-192 90-115 (312)
397 1znw_A Guanylate kinase, GMP k 91.4 0.094 3.2E-06 50.8 3.0 25 167-191 20-44 (207)
398 1u94_A RECA protein, recombina 91.4 0.15 5.1E-06 53.9 4.7 37 167-203 63-99 (356)
399 2zr9_A Protein RECA, recombina 91.3 0.16 5.3E-06 53.7 4.8 37 167-203 61-97 (349)
400 1z6g_A Guanylate kinase; struc 91.3 0.085 2.9E-06 51.6 2.6 25 167-191 23-47 (218)
401 1rj9_A FTSY, signal recognitio 91.3 0.17 5.7E-06 52.3 4.9 35 167-202 102-136 (304)
402 1cp2_A CP2, nitrogenase iron p 91.3 0.19 6.6E-06 50.7 5.4 35 168-202 2-36 (269)
403 2f6r_A COA synthase, bifunctio 91.2 0.11 3.7E-06 53.1 3.4 23 167-189 75-97 (281)
404 1cr0_A DNA primase/helicase; R 91.2 0.18 6.1E-06 51.9 5.0 36 167-202 35-71 (296)
405 2hf9_A Probable hydrogenase ni 91.2 0.17 5.7E-06 49.6 4.6 28 167-194 38-65 (226)
406 1htw_A HI0065; nucleotide-bind 91.2 0.12 4.1E-06 47.6 3.3 25 167-191 33-57 (158)
407 2q6t_A DNAB replication FORK h 91.1 0.79 2.7E-05 50.1 10.4 51 167-223 200-251 (444)
408 1zu4_A FTSY; GTPase, signal re 91.1 0.19 6.4E-06 52.3 5.1 36 166-201 104-139 (320)
409 3vr4_D V-type sodium ATPase su 91.1 0.27 9.2E-06 53.0 6.3 25 169-193 153-177 (465)
410 2f1r_A Molybdopterin-guanine d 91.1 0.086 2.9E-06 49.3 2.3 26 168-193 3-28 (171)
411 1yrb_A ATP(GTP)binding protein 91.1 0.2 7E-06 50.3 5.3 26 167-192 14-39 (262)
412 1n0w_A DNA repair protein RAD5 91.0 0.19 6.5E-06 49.8 4.9 36 167-202 24-65 (243)
413 3exa_A TRNA delta(2)-isopenten 91.0 0.12 4E-06 53.1 3.3 25 167-191 3-27 (322)
414 2r8r_A Sensor protein; KDPD, P 91.0 0.19 6.6E-06 48.9 4.6 25 170-194 9-33 (228)
415 3end_A Light-independent proto 90.9 0.2 6.7E-06 51.9 5.1 36 167-202 41-76 (307)
416 3b9q_A Chloroplast SRP recepto 90.9 0.19 6.5E-06 51.8 4.9 35 167-202 100-134 (302)
417 1pgv_A TMD-1, tropomodulin TMD 90.9 0.15 5.2E-06 48.6 3.7 35 555-589 97-135 (197)
418 2ga8_A Hypothetical 39.9 kDa p 90.8 0.18 6.1E-06 52.7 4.6 29 167-195 24-52 (359)
419 2i3b_A HCR-ntpase, human cance 90.7 0.13 4.3E-06 49.1 3.1 24 169-192 3-26 (189)
420 2zts_A Putative uncharacterize 90.7 0.25 8.6E-06 49.1 5.6 36 167-202 30-66 (251)
421 1ltq_A Polynucleotide kinase; 90.7 0.13 4.4E-06 53.1 3.5 23 168-190 3-25 (301)
422 3foz_A TRNA delta(2)-isopenten 90.6 0.14 4.8E-06 52.4 3.5 25 167-191 10-34 (316)
423 1nlf_A Regulatory protein REPA 90.6 0.21 7.3E-06 50.8 5.0 26 167-192 30-55 (279)
424 2afh_E Nitrogenase iron protei 90.4 0.25 8.5E-06 50.6 5.2 27 168-194 3-29 (289)
425 3upu_A ATP-dependent DNA helic 90.3 0.55 1.9E-05 51.6 8.3 33 169-201 47-80 (459)
426 1ls1_A Signal recognition part 90.3 0.25 8.5E-06 50.8 5.1 29 166-194 97-125 (295)
427 3tqc_A Pantothenate kinase; bi 90.2 0.16 5.4E-06 52.7 3.5 26 167-192 92-117 (321)
428 3lnc_A Guanylate kinase, GMP k 90.1 0.097 3.3E-06 51.7 1.8 25 167-191 27-52 (231)
429 4aby_A DNA repair protein RECN 90.1 1.1 3.6E-05 48.5 10.3 54 240-295 310-368 (415)
430 1j8m_F SRP54, signal recogniti 90.1 0.24 8.2E-06 50.9 4.8 36 167-202 98-133 (297)
431 3hws_A ATP-dependent CLP prote 90.1 0.14 5E-06 54.4 3.2 26 167-192 51-76 (363)
432 2xxa_A Signal recognition part 90.0 0.25 8.6E-06 53.6 5.1 28 167-194 100-127 (433)
433 2qmh_A HPR kinase/phosphorylas 90.0 0.13 4.6E-06 48.8 2.5 24 167-190 34-57 (205)
434 2og2_A Putative signal recogni 90.0 0.25 8.6E-06 52.1 4.9 35 167-202 157-191 (359)
435 1sq5_A Pantothenate kinase; P- 90.0 0.17 5.8E-06 52.4 3.6 26 167-192 80-105 (308)
436 4eaq_A DTMP kinase, thymidylat 89.9 0.19 6.6E-06 49.5 3.8 27 167-193 26-52 (229)
437 1a7j_A Phosphoribulokinase; tr 89.9 0.11 3.7E-06 53.3 2.0 26 167-192 5-30 (290)
438 2axn_A 6-phosphofructo-2-kinas 89.8 0.26 8.8E-06 55.1 5.1 30 167-196 35-64 (520)
439 3e70_C DPA, signal recognition 89.8 0.27 9.1E-06 51.3 4.9 28 167-194 129-156 (328)
440 2v3c_C SRP54, signal recogniti 89.8 0.16 5.3E-06 55.2 3.2 36 167-202 99-134 (432)
441 3kl4_A SRP54, signal recogniti 89.7 0.26 8.9E-06 53.3 4.9 36 167-202 97-132 (433)
442 3eph_A TRNA isopentenyltransfe 89.6 0.2 6.9E-06 53.3 3.8 25 168-192 3-27 (409)
443 1xp8_A RECA protein, recombina 89.6 0.27 9.3E-06 52.0 4.8 37 167-203 74-110 (366)
444 3b85_A Phosphate starvation-in 89.5 0.16 5.4E-06 49.2 2.7 24 167-190 22-45 (208)
445 2yhs_A FTSY, cell division pro 89.5 0.28 9.6E-06 53.6 4.9 35 167-202 293-327 (503)
446 2dyk_A GTP-binding protein; GT 89.5 0.21 7.3E-06 45.5 3.5 23 168-190 2-24 (161)
447 1q57_A DNA primase/helicase; d 89.4 1.3 4.5E-05 49.2 10.6 52 167-224 242-294 (503)
448 1oix_A RAS-related protein RAB 89.4 0.2 6.9E-06 47.6 3.4 24 167-190 29-52 (191)
449 3fdi_A Uncharacterized protein 89.2 0.22 7.7E-06 47.9 3.6 25 168-192 7-31 (201)
450 4dzz_A Plasmid partitioning pr 89.2 0.33 1.1E-05 46.6 4.8 35 168-202 2-37 (206)
451 2r9v_A ATP synthase subunit al 89.2 0.33 1.1E-05 53.0 5.1 83 168-255 176-279 (515)
452 4edh_A DTMP kinase, thymidylat 89.2 0.5 1.7E-05 45.8 6.1 28 167-194 6-33 (213)
453 2ocp_A DGK, deoxyguanosine kin 89.1 0.22 7.6E-06 49.4 3.6 26 167-192 2-27 (241)
454 2pcj_A ABC transporter, lipopr 89.1 0.17 5.9E-06 49.6 2.7 23 167-189 30-52 (224)
455 2onk_A Molybdate/tungstate ABC 89.1 0.2 6.7E-06 49.8 3.1 22 168-189 25-46 (240)
456 4hlc_A DTMP kinase, thymidylat 89.0 0.35 1.2E-05 46.7 4.8 29 168-196 3-31 (205)
457 1q3t_A Cytidylate kinase; nucl 89.0 0.22 7.4E-06 49.3 3.4 25 167-191 16-40 (236)
458 2qe7_A ATP synthase subunit al 89.0 0.36 1.2E-05 52.6 5.3 83 168-255 163-266 (502)
459 2wjg_A FEOB, ferrous iron tran 88.9 0.27 9.3E-06 46.2 3.9 23 167-189 7-29 (188)
460 3tif_A Uncharacterized ABC tra 88.9 0.18 6E-06 50.0 2.6 23 167-189 31-53 (235)
461 2wji_A Ferrous iron transport 88.7 0.24 8.2E-06 45.7 3.3 22 168-189 4-25 (165)
462 2ged_A SR-beta, signal recogni 88.7 0.32 1.1E-05 46.0 4.3 24 167-190 48-71 (193)
463 3hyn_A Putative signal transdu 88.6 0.71 2.4E-05 42.5 6.1 90 24-118 5-117 (189)
464 1fx0_A ATP synthase alpha chai 88.5 0.33 1.1E-05 53.0 4.5 89 168-261 164-274 (507)
465 2f9l_A RAB11B, member RAS onco 88.4 0.23 7.8E-06 47.5 3.0 24 167-190 5-28 (199)
466 2ce2_X GTPase HRAS; signaling 88.4 0.25 8.5E-06 45.1 3.1 22 169-190 5-26 (166)
467 2cbz_A Multidrug resistance-as 88.4 0.2 6.8E-06 49.6 2.6 24 167-190 31-54 (237)
468 1svm_A Large T antigen; AAA+ f 88.3 0.24 8.1E-06 52.7 3.3 25 167-191 169-193 (377)
469 2d2e_A SUFC protein; ABC-ATPas 88.3 0.24 8.1E-06 49.6 3.1 23 167-189 29-51 (250)
470 2h92_A Cytidylate kinase; ross 88.2 0.23 7.8E-06 48.4 2.9 24 168-191 4-27 (219)
471 1pzn_A RAD51, DNA repair and r 88.2 0.41 1.4E-05 50.4 5.1 25 167-191 131-155 (349)
472 1bif_A 6-phosphofructo-2-kinas 88.2 0.37 1.3E-05 53.1 4.9 30 167-196 39-68 (469)
473 3gfo_A Cobalt import ATP-bindi 88.2 0.21 7E-06 50.7 2.6 22 168-189 35-56 (275)
474 2p67_A LAO/AO transport system 88.2 1 3.4E-05 47.3 8.0 27 167-193 56-82 (341)
475 2c61_A A-type ATP synthase non 88.1 0.52 1.8E-05 51.1 5.8 25 168-192 153-177 (469)
476 2zej_A Dardarin, leucine-rich 88.1 0.2 6.8E-06 47.2 2.3 21 169-189 4-24 (184)
477 1puj_A YLQF, conserved hypothe 88.1 1.9 6.5E-05 43.7 9.8 23 167-189 120-142 (282)
478 1b0u_A Histidine permease; ABC 88.0 0.21 7.3E-06 50.3 2.6 23 167-189 32-54 (262)
479 2j37_W Signal recognition part 88.0 0.42 1.4E-05 52.8 5.1 37 166-202 100-136 (504)
480 1g41_A Heat shock protein HSLU 88.0 0.25 8.6E-06 53.5 3.2 28 167-194 50-77 (444)
481 2zu0_C Probable ATP-dependent 88.0 0.25 8.7E-06 49.9 3.1 23 167-189 46-68 (267)
482 1sgw_A Putative ABC transporte 87.9 0.2 6.7E-06 48.8 2.1 22 168-189 36-57 (214)
483 1ji0_A ABC transporter; ATP bi 87.9 0.22 7.6E-06 49.4 2.6 22 168-189 33-54 (240)
484 4g1u_C Hemin import ATP-bindin 87.9 0.22 7.5E-06 50.3 2.6 23 167-189 37-59 (266)
485 2ck3_A ATP synthase subunit al 87.8 0.51 1.7E-05 51.6 5.5 25 168-192 163-188 (510)
486 3cmu_A Protein RECA, recombina 87.8 0.53 1.8E-05 60.2 6.4 36 167-202 1427-1462(2050)
487 1z2a_A RAS-related protein RAB 87.8 0.28 9.4E-06 45.0 3.0 21 169-189 7-27 (168)
488 2v9p_A Replication protein E1; 87.8 0.28 9.6E-06 50.4 3.3 25 167-191 126-150 (305)
489 1mv5_A LMRA, multidrug resista 87.8 0.24 8.3E-06 49.2 2.8 23 167-189 28-50 (243)
490 2ffh_A Protein (FFH); SRP54, s 87.7 0.48 1.6E-05 51.1 5.3 29 166-194 97-125 (425)
491 3kjh_A CO dehydrogenase/acetyl 87.7 0.4 1.4E-05 47.6 4.4 33 170-202 3-35 (254)
492 2pze_A Cystic fibrosis transme 87.7 0.23 8E-06 48.9 2.6 57 237-295 142-202 (229)
493 2olj_A Amino acid ABC transpor 87.7 0.23 7.9E-06 50.0 2.6 23 167-189 50-72 (263)
494 1g6h_A High-affinity branched- 87.7 0.23 7.9E-06 49.9 2.6 23 167-189 33-55 (257)
495 3con_A GTPase NRAS; structural 87.7 0.28 9.5E-06 46.3 3.0 23 168-190 22-44 (190)
496 2ff7_A Alpha-hemolysin translo 87.6 0.24 8.1E-06 49.4 2.6 23 167-189 35-57 (247)
497 3gqb_B V-type ATP synthase bet 87.5 0.57 1.9E-05 50.5 5.5 24 169-192 149-172 (464)
498 1vpl_A ABC transporter, ATP-bi 87.4 0.25 8.4E-06 49.6 2.6 23 167-189 41-63 (256)
499 3v9p_A DTMP kinase, thymidylat 87.4 0.55 1.9E-05 46.0 5.0 28 167-194 25-52 (227)
500 3oaa_A ATP synthase subunit al 87.3 0.78 2.7E-05 49.9 6.5 23 168-190 163-186 (513)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.1e-39 Score=374.79 Aligned_cols=276 Identities=16% Similarity=0.190 Sum_probs=218.9
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHH----HhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcc-------c----
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFN----KISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRI-------L---- 230 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~----~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-------~---- 230 (808)
.+++|+|+||||+||||||+++|+ +++.+|+.++|+..... .. .+...+++.++..+..... .
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~-~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 228 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGT-AP-KSTFDLFTDILLMLKSEDDLLNFPSVEHVTS 228 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCC-ST-THHHHHHHHHHHHHTTTSCCTTCCCCTTCCH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCC-CC-CCHHHHHHHHHHHHhcCcccccccccccccH
Confidence 379999999999999999999997 68899999999963221 11 3577888888887765421 0
Q ss_pred -ccHHHHHHHHccc-eEEEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhhhhhcC-CCeEEEecCCChhhHHHHH
Q 041551 231 -RDVRSQLNRLARK-MVLLVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQVLKNCW-AGQIYQMKELVYTDAQKLF 307 (808)
Q Consensus 231 -~~~~~l~~~L~~~-~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf 307 (808)
.....+++.|+++ ||||||||||+.+++ .+.. .+||+||||||++.++..++ ...+|+|++|+.+||++||
T Consensus 229 ~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf 302 (549)
T 2a5y_B 229 VVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFL 302 (549)
T ss_dssp HHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHH
Confidence 2367888899996 999999999998876 3322 27999999999999988775 4468999999999999999
Q ss_pred HHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhhcCCCHHHHHHHHh-hhhcCcchhHHHHHHHhhcCCcHHHHH
Q 041551 308 SQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYLCGRSKEEWESAMR-KLEIIPHVEIQEVLKISYDSLDDSQKN 386 (808)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~w~~~l~-~l~~~~~~~i~~~l~~sy~~L~~~~k~ 386 (808)
.+++|+... .+...+++++|+++|+|+||||+++|+.++.+.. +|...+. .+...+...+..++.+||+.||++.|.
T Consensus 303 ~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~ 380 (549)
T 2a5y_B 303 EAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGLVGVECITPYSYKSLAMALQR 380 (549)
T ss_dssp HHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHH
T ss_pred HHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccHHHHHHHHhcccccccHHHHH
Confidence 999976532 4678889999999999999999999999987642 3323232 233224556888899999999999999
Q ss_pred HHh-----------hhhhccCCcchhHHHHHHhhc--CCcch-----------hhhhhhhcccceeeec---CCeEEecH
Q 041551 387 IFL-----------DIACFLEGEHRDKVISFFDAS--GLEAK-----------IELSVLEGKSLINLDV---FDQIRMHD 439 (808)
Q Consensus 387 ~fl-----------~la~fp~~~~~~~l~~~~~~~--g~~~~-----------~~l~~L~~~sLi~~~~---~~~~~mHd 439 (808)
||+ |||+||+++.+. +.+|.++ |+... ..+++|+++||++... ..+|+|||
T Consensus 381 ~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHd 458 (549)
T 2a5y_B 381 CVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDH 458 (549)
T ss_dssp HHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCH
T ss_pred HHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeCh
Confidence 999 999999999877 7899998 66532 2499999999998764 34699999
Q ss_pred HHHHHHHHHHhhcC
Q 041551 440 LLRDMGREIVRNES 453 (808)
Q Consensus 440 lv~~~~~~i~~~e~ 453 (808)
++|++|++++.+++
T Consensus 459 lv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 459 IIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHHHTTSCTHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998887764
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2.4e-39 Score=308.23 Aligned_cols=167 Identities=41% Similarity=0.701 Sum_probs=146.4
Q ss_pred CCCCCCCCcccEEecCccccCCCChHHHHHHHHHhCCcceEeeC-CcCCCCcchHHHHHHHHhhcceeEEecccccchhh
Q 041551 16 PSSSRNSNKYDVFLSFRGEDTRDNFTSHLYSALWHNNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASSGW 94 (808)
Q Consensus 16 ~~~~~~~~~~dvflSy~~~D~~~~f~~~l~~~l~~~g~~~~~d~-~l~~g~~~~~~i~~ai~~s~~~v~v~S~~y~~s~~ 94 (808)
||++.+.|+|||||||+|+|+|.+|++||+.+|+++||++|+|+ ++.+|+.|.+.|.+||++||++|+|+|++|++|.|
T Consensus 27 ~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~W 106 (204)
T 3ozi_A 27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKW 106 (204)
T ss_dssp -------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHH
T ss_pred CcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcH
Confidence 45556789999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhc-CCCeEEEEEeeeCCCccccccchhHHHHHhhhccCc-cchhhHhhhhHhhhcccCCccceeEEEE
Q 041551 95 CLDELSKIFECKHD-YGQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGERYP-EKMQRWGNTLTEAANLSGFDSHVISIWI 172 (808)
Q Consensus 95 c~~el~~~~~~~~~-~~~~v~Pv~~~v~p~~vr~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~~~vi~I 172 (808)
|++||++|++|.+. ++++|+||||+|+|++||+|+|+|+++|.+++.++. +++++|+.||++++++.|++..
T Consensus 107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~~~~------ 180 (204)
T 3ozi_A 107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIG------ 180 (204)
T ss_dssp HHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBEEEC------
T ss_pred HHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCceecC------
Confidence 99999999999875 578999999999999999999999999999998865 7899999999999999998753
Q ss_pred eecCCCcHhHHHHHHHHHh
Q 041551 173 WGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 173 ~G~gGiGKTtLA~~~~~~~ 191 (808)
.+-.-..++.++.+++
T Consensus 181 ---~~~~e~~~i~~Iv~di 196 (204)
T 3ozi_A 181 ---KNDKQGAIADKVSADI 196 (204)
T ss_dssp ---TTSCHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHH
Confidence 1333445666666544
No 3
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=9.8e-39 Score=299.87 Aligned_cols=164 Identities=43% Similarity=0.730 Sum_probs=136.8
Q ss_pred CCCCcccEEecCccccCCCChHHHHHHHHHhCCcceEeeC-CcCCCCcchHHHHHHHHhhcceeEEecccccchhhhHHH
Q 041551 20 RNSNKYDVFLSFRGEDTRDNFTSHLYSALWHNNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCLDE 98 (808)
Q Consensus 20 ~~~~~~dvflSy~~~D~~~~f~~~l~~~l~~~g~~~~~d~-~l~~g~~~~~~i~~ai~~s~~~v~v~S~~y~~s~~c~~e 98 (808)
+..|+|||||||+|+|+|++|++||+.+|+++||++|+|+ ++.+|+.|.++|.+||++|+++|+|+|++|++|+||++|
T Consensus 4 s~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~E 83 (176)
T 3jrn_A 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDE 83 (176)
T ss_dssp ---CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHH
T ss_pred CCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHH
Confidence 3579999999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCeEEEEEeeeCCCccccccchhHHHHHhhhccC-ccchhhHhhhhHhhhcccCCccceeEEEEeecCC
Q 041551 99 LSKIFECKHDYGQIVIPVFCRVDPSHVRRQTGTFGDYFSKLGERY-PEKMQRWGNTLTEAANLSGFDSHVISIWIWGIGG 177 (808)
Q Consensus 99 l~~~~~~~~~~~~~v~Pv~~~v~p~~vr~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~vi~I~G~gG 177 (808)
|++|++|.+.+++.|+||||+|+|++||+|+|+|+++|.+++.+. .+++++|+.||+++++++|++..
T Consensus 84 L~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~~~~----------- 152 (176)
T 3jrn_A 84 LVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSG----------- 152 (176)
T ss_dssp HHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCEECC-----------
T ss_pred HHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccceecC-----------
Confidence 999999999899999999999999999999999999999998873 48999999999999999998751
Q ss_pred CcHhHHHHHHHHHhhcc
Q 041551 178 IGKTTIADAVFNKISRH 194 (808)
Q Consensus 178 iGKTtLA~~~~~~~~~~ 194 (808)
-+-+.+...+.+.+...
T Consensus 153 ~~e~~~i~~Iv~~v~~~ 169 (176)
T 3jrn_A 153 DDDSKLVDKIANEISNK 169 (176)
T ss_dssp SCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 24788888888776554
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-33 Score=356.63 Aligned_cols=274 Identities=20% Similarity=0.299 Sum_probs=213.9
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHH---hhcccCceE-EEecchhhhhccCHHHHHHHHHhhHhcCcc-----c----cc
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNK---ISRHFEGSY-FAQNVREAEETGGIKDLQKELLSDVLNDRI-----L----RD 232 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~---~~~~F~~~~-~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~-----~----~~ 232 (808)
.+++|+|+||||+||||||+++|++ ...+|...+ |+. +.... ..........+...+..... . +.
T Consensus 146 ~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 223 (1249)
T 3sfz_A 146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQD-KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEA 223 (1249)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCC-HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcC-chHHHHHHHHHHHHhhhhcccccCCCCCHHHH
Confidence 4889999999999999999999985 456676655 555 32211 12223334444444432211 1 34
Q ss_pred HHHHHHHHccc--eEEEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhhhhh-cCCCeEEEecC-CChhhHHHHHH
Q 041551 233 VRSQLNRLARK--MVLLVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQVLKN-CWAGQIYQMKE-LVYTDAQKLFS 308 (808)
Q Consensus 233 ~~~l~~~L~~~--~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~-~~~~~~~~l~~-L~~~ea~~Lf~ 308 (808)
.+.++..+.++ ||||||||||+.++|+.+ ++||+||||||++.++.. +.....+++++ |+.+||++||.
T Consensus 224 ~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~ 296 (1249)
T 3sfz_A 224 KDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILS 296 (1249)
T ss_dssp HHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHH
Confidence 45555666655 999999999998877654 679999999999999854 45667899996 99999999999
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhhcCCCHHHHHHHHhhhhcCc-----------chhHHHHHHHhh
Q 041551 309 QYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIIP-----------HVEIQEVLKISY 377 (808)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~w~~~l~~l~~~~-----------~~~i~~~l~~sy 377 (808)
..++. ..+.+.+.+++|+++|+|+||||+++|++|+.+. ..|+..++++.... ...+..+|.+||
T Consensus 297 ~~~~~---~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~ 372 (1249)
T 3sfz_A 297 LFVNM---KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISV 372 (1249)
T ss_dssp HHHTS---CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHH
T ss_pred HhhCC---ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHH
Confidence 98843 2344556789999999999999999999998665 46888888775432 245899999999
Q ss_pred cCCcHHHHHHHhhhhhccCCcc--hhHHHHHHhhcCCcchhhhhhhhcccceeeecCCe---EEecHHHHHHHHHHHhhc
Q 041551 378 DSLDDSQKNIFLDIACFLEGEH--RDKVISFFDASGLEAKIELSVLEGKSLINLDVFDQ---IRMHDLLRDMGREIVRNE 452 (808)
Q Consensus 378 ~~L~~~~k~~fl~la~fp~~~~--~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~~~~~---~~mHdlv~~~~~~i~~~e 452 (808)
+.|++++|.||++||+||+++. ...++.+|.+++...+..+++|+++||++...++. |+||+++|+++++.+.++
T Consensus 373 ~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 373 EMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 9999999999999999999874 56789999888877888899999999999876554 999999999999987665
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-33 Score=326.49 Aligned_cols=252 Identities=15% Similarity=0.174 Sum_probs=193.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH--HhhcccCc-eEEEecchhhhhccCHHHHHHHHHhh---Hhc----Ccc-----c-
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN--KISRHFEG-SYFAQNVREAEETGGIKDLQKELLSD---VLN----DRI-----L- 230 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~--~~~~~F~~-~~~~~~~~~~~~~~~~~~l~~~ll~~---~~~----~~~-----~- 230 (808)
.++|+|+||||+||||||+++|+ +++.+|+. ++|+.. +...+...+...+... +.. ... .
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsV----s~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~ 225 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEEC----CCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEe----CCCCCHHHHHHHHHHHHhhcCcccccccccccCCCC
Confidence 78999999999999999999997 57889997 677763 3334444554444332 210 000 0
Q ss_pred ---ccHHHHHHHH---ccceEEEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhhhhhcCCCeEEEec------CC
Q 041551 231 ---RDVRSQLNRL---ARKMVLLVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQVLKNCWAGQIYQMK------EL 298 (808)
Q Consensus 231 ---~~~~~l~~~L---~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~------~L 298 (808)
.....+++.| .++|+||||||||+.++|+.+. +||+||||||++.++..+.....|+|+ +|
T Consensus 226 ~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~L 298 (1221)
T 1vt4_I 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298 (1221)
T ss_dssp HHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCC
T ss_pred CHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhcCCCeEEEecCccccCCc
Confidence 2234455544 5799999999999999998762 699999999999988644433456777 99
Q ss_pred ChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhhcCC--CHHHHHHHHhhhhcCcchhHHHHHHHh
Q 041551 299 VYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYLCGR--SKEEWESAMRKLEIIPHVEIQEVLKIS 376 (808)
Q Consensus 299 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~--~~~~w~~~l~~l~~~~~~~i~~~l~~s 376 (808)
+.+||++||.+.. +.. ..+++.+ .|+|+||||+++|+.|+++ +.+.|+.. ....+..+|++|
T Consensus 299 S~eEA~eLF~~~~-g~~-----~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelS 362 (1221)
T 1vt4_I 299 TPDEVKSLLLKYL-DCR-----PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESS 362 (1221)
T ss_dssp CHHHHHHHHHHHH-CCC-----TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHc-CCC-----HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHH
Confidence 9999999999984 221 2223333 3999999999999999866 67888753 346799999999
Q ss_pred hcCCcHHH-HHHHhhhhhccCCcch--hHHHHHHhhcCC-cchhhhhhhhcccceeeec-CCeEEecHHHHHHH
Q 041551 377 YDSLDDSQ-KNIFLDIACFLEGEHR--DKVISFFDASGL-EAKIELSVLEGKSLINLDV-FDQIRMHDLLRDMG 445 (808)
Q Consensus 377 y~~L~~~~-k~~fl~la~fp~~~~~--~~l~~~~~~~g~-~~~~~l~~L~~~sLi~~~~-~~~~~mHdlv~~~~ 445 (808)
|+.|++++ |.||++||+||+++.+ +.+..+|+++|. .....+++|+++||++... .++|+|||++++++
T Consensus 363 Yd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 99999999 9999999999998754 568899998863 3556799999999999863 56899999999854
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.97 E-value=5.7e-31 Score=306.78 Aligned_cols=269 Identities=22% Similarity=0.305 Sum_probs=201.6
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHh---hcccC-ceEEEecchhhhhccCHHHHHHHHHhhHhc-----Cccc----cc
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKI---SRHFE-GSYFAQNVREAEETGGIKDLQKELLSDVLN-----DRIL----RD 232 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~---~~~F~-~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~-----~~~~----~~ 232 (808)
..++|+|+||||+||||||.+++++. +.+|+ .++|+... .......+..+ ..+...+.. .... ..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~-~~~~~~~~~~l-~~l~~~l~~~~~~~~~~~~~~~~~ 223 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVG-KQDKSGLLMKL-QNLCTRLDQDESFSQRLPLNIEEA 223 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEE-SCCHHHHHHHH-HHHHHHHCSSCCSCSSCCCSHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECC-CCchHHHHHHH-HHHHHHhccccccccCCCCCHHHH
Confidence 37899999999999999999999853 77896 57776632 21111111122 222222221 0111 34
Q ss_pred HHHHHHHHcc--ceEEEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhhhhhcCCCeEEEe---cCCChhhHHHHH
Q 041551 233 VRSQLNRLAR--KMVLLVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQVLKNCWAGQIYQM---KELVYTDAQKLF 307 (808)
Q Consensus 233 ~~~l~~~L~~--~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l---~~L~~~ea~~Lf 307 (808)
...+++.+.+ +++||||||||+..+++.+ ++|++||||||+..++..+. ...+++ ++|+.+||++||
T Consensus 224 ~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~ 295 (591)
T 1z6t_A 224 KDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEIL 295 (591)
T ss_dssp HHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHH
T ss_pred HHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHH
Confidence 4556666665 7899999999998776543 67999999999998876543 355666 489999999999
Q ss_pred HHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhhcCCCHHHHHHHHhhhhcCc-----------chhHHHHHHHh
Q 041551 308 SQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYLCGRSKEEWESAMRKLEIIP-----------HVEIQEVLKIS 376 (808)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~~~~~~w~~~l~~l~~~~-----------~~~i~~~l~~s 376 (808)
...++.. .....+.+.+|+++|+|+||||+++|+.++... ..|...+..+.... ...+..++..|
T Consensus 296 ~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s 371 (591)
T 1z6t_A 296 SLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSIS 371 (591)
T ss_dssp HHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHH
T ss_pred HHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHH
Confidence 9998531 223346789999999999999999999998653 36888887765432 24688999999
Q ss_pred hcCCcHHHHHHHhhhhhccCCcc--hhHHHHHHhhcCCcchhhhhhhhcccceeeecC---CeEEecHHHHHHHHHH
Q 041551 377 YDSLDDSQKNIFLDIACFLEGEH--RDKVISFFDASGLEAKIELSVLEGKSLINLDVF---DQIRMHDLLRDMGREI 448 (808)
Q Consensus 377 y~~L~~~~k~~fl~la~fp~~~~--~~~l~~~~~~~g~~~~~~l~~L~~~sLi~~~~~---~~~~mHdlv~~~~~~i 448 (808)
|+.|+++.|.||+++|+||.+.. ...+..+|..++......++.|+++||++...+ .+|+||+++|+++++.
T Consensus 372 ~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 372 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 99999999999999999998764 467888898765556778999999999986543 2699999999999987
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.93 E-value=1.7e-27 Score=223.92 Aligned_cols=119 Identities=22% Similarity=0.409 Sum_probs=111.2
Q ss_pred CCCCcccEEecCccccCCCChHHHHHHHHHhCCcceEeeC-CcCCCCcchHHHHHHHHhhcceeEEecccccchhhhHHH
Q 041551 20 RNSNKYDVFLSFRGEDTRDNFTSHLYSALWHNNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCLDE 98 (808)
Q Consensus 20 ~~~~~~dvflSy~~~D~~~~f~~~l~~~l~~~g~~~~~d~-~l~~g~~~~~~i~~ai~~s~~~v~v~S~~y~~s~~c~~e 98 (808)
...++|||||||+++| ++.|+.||+.+|+++|+++|+|+ ++.+|+.|.+.|.++|++|++.|+|+|++|+.|.||++|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 4579999999999999 66899999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCeEEEEEeeeCCCccccccchhHHHHHhh
Q 041551 99 LSKIFECKHDYGQIVIPVFCRVDPSHVRRQTGTFGDYFSKL 139 (808)
Q Consensus 99 l~~~~~~~~~~~~~v~Pv~~~v~p~~vr~~~~~~~~~~~~~ 139 (808)
+..++++...++.+|+||||+|+|++||+|.|.|++.+...
T Consensus 95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~ 135 (154)
T 3h16_A 95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN 135 (154)
T ss_dssp HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence 99999988777889999999999999999999998876654
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.2e-22 Score=217.83 Aligned_cols=220 Identities=19% Similarity=0.239 Sum_probs=119.5
Q ss_pred cceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCC
Q 041551 511 KLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDY 589 (808)
Q Consensus 511 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~ 589 (808)
+++.|+|++|.+..+|..+.++++|++|+|++|.+. .+|. ++++++|++|+|++|.. ..+|..++++++|++|++++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEECCC
Confidence 344444555555555555555555555555555433 4443 55555555555555532 25555555555555555555
Q ss_pred CCCCCcCCCcC-C---------CCCCCEEeccCCCCCCccccccccc--ccEEEecccCCeecCcccccCCcCcEEEeec
Q 041551 590 CISLTSLPTSI-H---------SKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIKELPSSIECLSNLQYLYIWD 657 (808)
Q Consensus 590 ~~~l~~lp~~~-~---------l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~ 657 (808)
|+.++.+|..+ . +++|++|+|++|. +..+|..+... |+.|+|++|.++.+|..++.+++|+.|+|++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 55555555443 1 5555555555552 33444443332 5556666666666665566666666666666
Q ss_pred CCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCCCccccccccccccc
Q 041551 658 CSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLG 736 (808)
Q Consensus 658 n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~ 736 (808)
|.+.+.+|..++.+++|+.|++++|+.++.+|.....+ ..+..+.+.+|.+....|..+..++.+..+.+..+.+.
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l---~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL---TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC---TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcC---CCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 66656666656666666666666665555555432211 12344555555555556666666666666666655443
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.8e-22 Score=214.95 Aligned_cols=204 Identities=25% Similarity=0.376 Sum_probs=176.7
Q ss_pred CCceeEEEecCCCCCCc---ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecC
Q 041551 489 FAEVRHLEWARCPLKTL---NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLR 564 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~ 564 (808)
..+++.|++++|.+..+ ...+++|++|+|++|.+..+|..++++++|++|+|++|.+. .+|. ++++++|++|+|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 46789999999998887 55688999999999999999999999999999999999766 6775 9999999999999
Q ss_pred CCCCCccccccccC---------CCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccccccccc--ccEEEe
Q 041551 565 GCLSLVETHSTIQY---------LNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCH--MWRLEL 632 (808)
Q Consensus 565 ~n~~l~~~p~~~~~---------l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L 632 (808)
+|..++.+|..+.. +++|++|++++| .++.+|..+ .+++|++|+|++|.. ..+|..+... |+.|+|
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l-~~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPL-SALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCC-CCCCGGGGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCC-CcCchhhccCCCCCEEEC
Confidence 99888888887664 999999999996 577899877 789999999999954 4566555443 999999
Q ss_pred cccCCe-ecCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCc
Q 041551 633 TKVGIK-ELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCN 695 (808)
Q Consensus 633 ~~n~i~-~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~ 695 (808)
++|.+. .+|..++.+++|+.|+|++|+..+.+|..+..+++|+.|++++|+.++.+|.....+
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 998766 678889999999999999999999999999999999999999999998888765443
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=6.9e-21 Score=228.20 Aligned_cols=244 Identities=15% Similarity=0.069 Sum_probs=141.8
Q ss_pred CceeEEEecCCCCCCc----ccCcccceEeecCCCCcc-cccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEec
Q 041551 490 AEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQ-QLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWL 563 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L 563 (808)
++|+.|++.+|.+... +..+++|+.|++++|.+. .+|..+..+++|++|+|++|.+.+.+|. +..+++|++|++
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 4455555555554422 334455555555555555 4444555555555555555555555553 555555555555
Q ss_pred CCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccccccccc--ccEEEecccCCe-e
Q 041551 564 RGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIK-E 639 (808)
Q Consensus 564 ~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~-~ 639 (808)
++|...+.+|..+.++++|++|++++|...+.+|..+ .+++|++|+|++|...+.+|...... |+.|+|++|.++ .
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 5555554555555555555556555554444555544 45555555555555444555444333 555555555544 3
Q ss_pred cCc----------------------------------------------------------------------ccccCCc
Q 041551 640 LPS----------------------------------------------------------------------SIECLSN 649 (808)
Q Consensus 640 lp~----------------------------------------------------------------------~~~~l~~ 649 (808)
+|. .++.+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 332 2334566
Q ss_pred CcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCCCcccccc
Q 041551 650 LQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLKHKSQRN 729 (808)
Q Consensus 650 L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~ 729 (808)
|+.|+|++|.+.+.+|..++.+++|+.|+|++|...+.+|.....+ ..+..+.+++|.+.+..|..+..++.+..++
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L---~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL---RGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC---TTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC---CCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 7777777777767777777777777777777776555555443332 2345567777777777777777777777777
Q ss_pred ccccccc
Q 041551 730 LDRRSLG 736 (808)
Q Consensus 730 l~~n~~~ 736 (808)
+++|.+.
T Consensus 711 ls~N~l~ 717 (768)
T 3rgz_A 711 LSNNNLS 717 (768)
T ss_dssp CCSSEEE
T ss_pred CcCCccc
Confidence 7777653
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=2.5e-21 Score=206.33 Aligned_cols=240 Identities=13% Similarity=0.051 Sum_probs=192.9
Q ss_pred CceeEEEecCCCCCC---c---ccCcccceEeecCC-CCcc-cccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcE
Q 041551 490 AEVRHLEWARCPLKT---L---NICAEKLVSLKMPR-SKVQ-QLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEI 560 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~---l---~~~~~~L~~L~L~~-n~l~-~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~ 560 (808)
.+++.|++++|.+.. + +..+++|++|++++ |.+. .+|..+.++++|++|+|++|.+.+.+|. +.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999998875 3 56788999999994 7777 6788899999999999999987767786 899999999
Q ss_pred EecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCC-CCCEEeccCCCCCCccccccccc-ccEEEecccCC
Q 041551 561 LWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSK-HLKELSLRGCSNLKIFPEITSCH-MWRLELTKVGI 637 (808)
Q Consensus 561 L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~-~L~~L~L~~~~~l~~~p~~~~~~-L~~L~L~~n~i 637 (808)
|+|++|...+.+|..+..+++|++|++++|.....+|..+ .++ +|++|++++|.....+|..+... |+.|+|++|.+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l 209 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML 209 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcc
Confidence 9999997766888899999999999999976555788777 666 89999999997655666655544 99999999999
Q ss_pred ee-cCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCccc
Q 041551 638 KE-LPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETH 716 (808)
Q Consensus 638 ~~-lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~ 716 (808)
+. +|..+..+++|+.|+|++|.+.+.+|. +..+++|++|++++|.....+|..... ...+..+.+.+|.+.+..|
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~---l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ---LKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGG---CTTCCEEECCSSEEEEECC
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhc---CcCCCEEECcCCcccccCC
Confidence 85 466789999999999999988666665 888899999999998654455543222 2245667888888877777
Q ss_pred ccccCCCccccccccccc
Q 041551 717 EVFCGLKHKSQRNLDRRS 734 (808)
Q Consensus 717 ~~f~~l~~l~~~~l~~n~ 734 (808)
.. ..++.+..+++.+|.
T Consensus 286 ~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CS-TTGGGSCGGGTCSSS
T ss_pred CC-ccccccChHHhcCCC
Confidence 65 778888888888887
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.7e-19 Score=193.75 Aligned_cols=240 Identities=16% Similarity=0.132 Sum_probs=182.4
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccc-cchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQL-WDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
++.++.|++++|.+..+ +..+++|++|+|++|.+..+ |..+.++++|++|+|++|.+. .+|. +. ++|++|+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 46889999999988877 45678899999999999877 667899999999999999744 5554 43 7899999
Q ss_pred cCCCCCCccccccccCCCCcCEEecCCCCCCC--cCCCcC-CCCCCCEEeccCCCCCCcccccccccccEEEecccCCee
Q 041551 563 LRGCLSLVETHSTIQYLNKLEDLDLDYCISLT--SLPTSI-HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKE 639 (808)
Q Consensus 563 L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~--~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~ 639 (808)
+++|......+..+.++++|+.|++++|.... ..+..+ ++++|++|++++|. +..+|......|+.|++++|.++.
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITK 206 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCE
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCc
Confidence 99986555555568889999999999865321 334444 78899999999884 556776666668999999999987
Q ss_pred c-CcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCccccc
Q 041551 640 L-PSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEV 718 (808)
Q Consensus 640 l-p~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 718 (808)
+ |..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|. +..+|.. +.....+..+.+.+|.+....+..
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~---l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGG---LADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT---TTTCSSCCEEECCSSCCCCCCTTS
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChh---hccCCCcCEEECCCCcCCccChhh
Confidence 7 5678889999999999888755555578888999999999884 5555543 222334566788888888777777
Q ss_pred ccCC------Cccccccccccccc
Q 041551 719 FCGL------KHKSQRNLDRRSLG 736 (808)
Q Consensus 719 f~~l------~~l~~~~l~~n~~~ 736 (808)
||.. ..+..+++.+|.+.
T Consensus 283 f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 283 FCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp SSCSSCCTTSCCCSEEECCSSSSC
T ss_pred cCCcccccccccccceEeecCccc
Confidence 7754 55666777777654
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=2.3e-20 Score=223.61 Aligned_cols=243 Identities=15% Similarity=0.115 Sum_probs=197.2
Q ss_pred ceeEEEecCCCCCCc----cc--CcccceEeecCCCCcc-cccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 491 EVRHLEWARCPLKTL----NI--CAEKLVSLKMPRSKVQ-QLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 491 ~Lr~L~l~~~~l~~l----~~--~~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
+|+.|++++|.+... .. .+.+|++|++++|.+. .+|..+.++++|++|+|++|.+.+.+|. +.++++|+.|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 788888888876543 11 2667899999999888 6777889999999999999988778886 88899999999
Q ss_pred cCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccccccccc--ccEEEecccCCe-
Q 041551 563 LRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIK- 638 (808)
Q Consensus 563 L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~- 638 (808)
+++|...+.+|..+..+++|++|++++|...+.+|..+ ++++|++|+|++|...+.+|..+... |+.|+|++|.++
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 99998777888889999999999999987666788777 78999999999998777888776654 999999999998
Q ss_pred ecCcccccCCcCcEEEeecCCCcccccccc--------------------------------------------------
Q 041551 639 ELPSSIECLSNLQYLYIWDCSELESISSSI-------------------------------------------------- 668 (808)
Q Consensus 639 ~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~-------------------------------------------------- 668 (808)
.+|..++.+++|+.|+|++|++.+.+|..+
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccc
Confidence 678889999999999999998876766543
Q ss_pred --------------------cCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCCCccccc
Q 041551 669 --------------------FKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLKHKSQR 728 (808)
Q Consensus 669 --------------------~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~ 728 (808)
+.+++|+.|++++|...+.+|.....+ ..+..+.+++|.+.+..|..+..++.++.+
T Consensus 609 ~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l---~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L 685 (768)
T 3rgz_A 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM---PYLFILNLGHNDISGSIPDEVGDLRGLNIL 685 (768)
T ss_dssp GTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC---TTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc---ccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence 235678888998887655666543332 245668899999999999999999999999
Q ss_pred cccccccc
Q 041551 729 NLDRRSLG 736 (808)
Q Consensus 729 ~l~~n~~~ 736 (808)
++++|.+.
T Consensus 686 dLs~N~l~ 693 (768)
T 3rgz_A 686 DLSSNKLD 693 (768)
T ss_dssp ECCSSCCE
T ss_pred ECCCCccc
Confidence 99999876
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=4.8e-21 Score=204.11 Aligned_cols=225 Identities=12% Similarity=0.036 Sum_probs=186.0
Q ss_pred CCCCC-CCceeEEEecC-CCCCCc----ccCcccceEeecCCCCcc-cccchhhcccccceeccCCCCCCCCCCC-CCCC
Q 041551 484 SIGVP-FAEVRHLEWAR-CPLKTL----NICAEKLVSLKMPRSKVQ-QLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRA 555 (808)
Q Consensus 484 ~~~~~-~~~Lr~L~l~~-~~l~~l----~~~~~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l 555 (808)
|..+. +++|++|++++ |.+... +..+++|++|+|++|.+. .+|..+.++++|++|+|++|.+.+.+|. +..+
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 148 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence 33344 78999999995 776643 567899999999999998 7888899999999999999998878886 9999
Q ss_pred CCCcEEecCCCCCCccccccccCCC-CcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccccccccc--ccEEE
Q 041551 556 KNLEILWLRGCLSLVETHSTIQYLN-KLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCH--MWRLE 631 (808)
Q Consensus 556 ~~L~~L~L~~n~~l~~~p~~~~~l~-~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~ 631 (808)
++|++|+|++|...+.+|..++.++ +|++|++++|...+.+|..+ .++ |+.|++++|......|..+... |+.|+
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 9999999999977778999999998 99999999987666788877 555 9999999997655666655544 99999
Q ss_pred ecccCCeecCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCC
Q 041551 632 LTKVGIKELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWE 711 (808)
Q Consensus 632 L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~ 711 (808)
|++|.++..+..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|+..+.+|.. ..+ ..+..+.+.+|..
T Consensus 228 L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l---~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNL---QRFDVSAYANNKC 303 (313)
T ss_dssp CCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTG---GGSCGGGTCSSSE
T ss_pred CCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccc---cccChHHhcCCCC
Confidence 999999977666999999999999999998899999999999999999999766677765 211 1234456666654
Q ss_pred CC
Q 041551 712 PC 713 (808)
Q Consensus 712 ~~ 713 (808)
-|
T Consensus 304 lc 305 (313)
T 1ogq_A 304 LC 305 (313)
T ss_dssp EE
T ss_pred cc
Confidence 33
No 15
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.83 E-value=3.9e-22 Score=184.14 Aligned_cols=108 Identities=21% Similarity=0.345 Sum_probs=80.9
Q ss_pred CCCCCCCCcccEEecCccccCCCChHHHHHHHHHh--CCcceEeeC-CcCCCCcchHHHHHHHHhhcceeEEecccccch
Q 041551 16 PSSSRNSNKYDVFLSFRGEDTRDNFTSHLYSALWH--NNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASS 92 (808)
Q Consensus 16 ~~~~~~~~~~dvflSy~~~D~~~~f~~~l~~~l~~--~g~~~~~d~-~l~~g~~~~~~i~~ai~~s~~~v~v~S~~y~~s 92 (808)
|+|+...+.|||||||+++| ..|+.+|+.+|++ .|+++|+|+ ++.+|+.+.+.|.+||++||++|+|+|++|++|
T Consensus 2 ~~~~r~~k~YDvFISy~~~D--~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S 79 (146)
T 3ub2_A 2 PGSSRWSKDYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQD 79 (146)
T ss_dssp --CCTTSSSEEEEEECCGGG--HHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHC
T ss_pred CCCCCCCCcceEEEeCChhh--HHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccC
Confidence 44566678999999999999 5799999999998 699999999 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhcCCCeEEEEEeeeCCCcc
Q 041551 93 GWCLDELSKIFECKHDYGQIVIPVFCRVDPSHV 125 (808)
Q Consensus 93 ~~c~~el~~~~~~~~~~~~~v~Pv~~~v~p~~v 125 (808)
.||..|+..++.+......+++||+|+|++.++
T Consensus 80 ~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~l 112 (146)
T 3ub2_A 80 PWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAY 112 (146)
T ss_dssp HHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGS
T ss_pred HHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhC
Confidence 999999999998764344478899999985443
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=2.3e-19 Score=192.85 Aligned_cols=240 Identities=13% Similarity=0.109 Sum_probs=191.3
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEec
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWL 563 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L 563 (808)
+++|++|++++|.+..+ +..+++|++|++++|.++.+|..+. ++|++|++++|.+....+. +.++++|++|++
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVEL 152 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEEC
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEEC
Confidence 78999999999998877 5577899999999999999988764 7999999999986655554 899999999999
Q ss_pred CCCCCCc--cccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCccccccccc--ccEEEecccCCee
Q 041551 564 RGCLSLV--ETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIKE 639 (808)
Q Consensus 564 ~~n~~l~--~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~~ 639 (808)
++|.... ..+..+..+++|++|++++| .++.+|.... ++|++|++++|......|..+... |+.|+|++|.++.
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 9996532 56677899999999999996 5778887654 899999999996554445555443 9999999999998
Q ss_pred cCc-ccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcC----CCCceeeecCCCCCCCC-
Q 041551 640 LPS-SIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNI----DGGFAFCIVVPHCWEPC- 713 (808)
Q Consensus 640 lp~-~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~----~~~~~~~l~l~~~~~~~- 713 (808)
++. .+..+++|+.|+|++|.+ ..+|..+..+++|++|++++|+ +..+|....+.. .......+.+.+|.+..
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred eChhhccCCCCCCEEECCCCcC-ccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCccccc
Confidence 865 699999999999999987 6899999999999999999985 555554322111 11233457788888764
Q ss_pred -cccccccCCCccccccccccc
Q 041551 714 -ETHEVFCGLKHKSQRNLDRRS 734 (808)
Q Consensus 714 -~~~~~f~~l~~l~~~~l~~n~ 734 (808)
..+..|..+..+..+++++|.
T Consensus 309 ~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 309 EIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GSCGGGGTTCCCGGGEEC----
T ss_pred ccCccccccccceeEEEecccC
Confidence 556788889999999998874
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=7.5e-20 Score=205.89 Aligned_cols=247 Identities=15% Similarity=0.142 Sum_probs=141.7
Q ss_pred CCceeEEEecCCCCCC-c----ccCcccceEeecCCCCcccc-cchhhcccccceeccCCCCCCCCCC-C--CCCCCCCc
Q 041551 489 FAEVRHLEWARCPLKT-L----NICAEKLVSLKMPRSKVQQL-WDDVQDLVNLKEIDLSRSESLTKLP-D--LSRAKNLE 559 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~-l----~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~~~~~~p-~--~~~l~~L~ 559 (808)
+++|++|++++|.+.. + +..+++|++|+|++|.+..+ |..+.++++|++|+|++|.+....| . +..+++|+
T Consensus 53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 5667777777666542 1 44566677777777776655 4456677777777777776544333 2 66677777
Q ss_pred EEecCCCCCCcccccc-ccCCCCcCEEecCCCCCCCcCCCcC-----------------------------------CCC
Q 041551 560 ILWLRGCLSLVETHST-IQYLNKLEDLDLDYCISLTSLPTSI-----------------------------------HSK 603 (808)
Q Consensus 560 ~L~L~~n~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~lp~~~-----------------------------------~l~ 603 (808)
+|+|++|......|.. +.++++|++|++++|......|..+ .++
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 7777776544444544 6677777777777754333222221 124
Q ss_pred CCCEEeccCCCCCCcccccc-----------------------------------------cccccEEEecccCCeec-C
Q 041551 604 HLKELSLRGCSNLKIFPEIT-----------------------------------------SCHMWRLELTKVGIKEL-P 641 (808)
Q Consensus 604 ~L~~L~L~~~~~l~~~p~~~-----------------------------------------~~~L~~L~L~~n~i~~l-p 641 (808)
+|++|++++|......|... ...|+.|++++|.+..+ |
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 56666666653322111100 01256666666666644 4
Q ss_pred cccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCcccc-CCCCCcCCCCceeeecCCCCCCCCccccccc
Q 041551 642 SSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFL-EIPSCNIDGGFAFCIVVPHCWEPCETHEVFC 720 (808)
Q Consensus 642 ~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~ 720 (808)
..++.+++|+.|+|++|.+.+..|..+..+++|++|++++|. +..++ .... ....+..+.+.+|.+....+..|.
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~ 368 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFE---NLDKLEVLDLSYNHIRALGDQSFL 368 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGGT---TCTTCCEEECCSSCCCEECTTTTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcChhHhc---CcccCCEEECCCCcccccChhhcc
Confidence 556677777777777777655555566777777777777764 33332 1111 112344566666666666566666
Q ss_pred CCCccccccccccccccee
Q 041551 721 GLKHKSQRNLDRRSLGRIS 739 (808)
Q Consensus 721 ~l~~l~~~~l~~n~~~~~~ 739 (808)
.++++..+++++|.+..++
T Consensus 369 ~l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 369 GLPNLKELALDTNQLKSVP 387 (455)
T ss_dssp TCTTCCEEECCSSCCSCCC
T ss_pred ccccccEEECCCCccccCC
Confidence 6677777777666665443
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=1.5e-19 Score=203.21 Aligned_cols=222 Identities=19% Similarity=0.209 Sum_probs=180.4
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCccccc-chhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLW-DDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
++++++|++++|.+..+ +..+++|+.|+|++|.+..++ ..+.++++|++|+|++|.+....+. +.++++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 57899999999998877 567899999999999999886 4589999999999999986655555 89999999999
Q ss_pred cCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC--CCCCCCEEeccCCCCCCcccccccc-cccEEEecccCCee
Q 041551 563 LRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITSC-HMWRLELTKVGIKE 639 (808)
Q Consensus 563 L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~-~L~~L~L~~n~i~~ 639 (808)
|++|......+..+.++++|+.|++++|+.++.+|... ++++|++|+|++| .+..+|..... .|+.|+|++|.++.
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCCcCcc
Confidence 99996554444578999999999999999999998754 7899999999999 45566654443 39999999999998
Q ss_pred c-CcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCc
Q 041551 640 L-PSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCE 714 (808)
Q Consensus 640 l-p~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~ 714 (808)
+ |..|.++++|+.|+|++|.+.+..|..+..+++|+.|+|++|. +..+|...... ...+..+.+.+|.+.|.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~--l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTP--LRYLVELHLHHNPWNCD 305 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTT--CTTCCEEECCSSCEECS
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhcc--ccCCCEEEccCCCcCCC
Confidence 7 6679999999999999999877777789999999999999984 55555422111 12345577777776653
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=205.63 Aligned_cols=244 Identities=19% Similarity=0.171 Sum_probs=164.0
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCccccc-chhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLW-DDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
+++|++|++++|.+..+ +..+++|++|+|++|.+..++ ..+.++++|++|+|++|.+....|. |.++++|+.|+
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 55666666666666555 234566666666666666553 3466666666666666655444443 66666777777
Q ss_pred cCCCCCCccccccccCCCCcCEEecCCCCCCCcCCC-cC-CCCCCCEEeccCCCCCCcccccccc--cccEEEecccCCe
Q 041551 563 LRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPT-SI-HSKHLKELSLRGCSNLKIFPEITSC--HMWRLELTKVGIK 638 (808)
Q Consensus 563 L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~-~~-~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~ 638 (808)
|++|......+..+.++++|+.|++++|. +..++. .+ .+++|+.|++++|..+..+|..... .|+.|+|++|.++
T Consensus 159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 237 (477)
T 2id5_A 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237 (477)
T ss_dssp EESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC
T ss_pred CCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc
Confidence 76664333333346667777777777643 444443 33 6677888888887777766654433 3888999999998
Q ss_pred ecCc-ccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccc
Q 041551 639 ELPS-SIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHE 717 (808)
Q Consensus 639 ~lp~-~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 717 (808)
.+|. .+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|. +..++.. .+.....+..+.+.+|.+....+.
T Consensus 238 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPY--AFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp SCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTT--TBTTCTTCCEEECCSSCCSCCCGG
T ss_pred ccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHH--HhcCcccCCEEECCCCcCceeCHh
Confidence 8874 58889999999999888755555568888999999999875 3333211 111122456678888888888778
Q ss_pred cccCCCccccccccccccc
Q 041551 718 VFCGLKHKSQRNLDRRSLG 736 (808)
Q Consensus 718 ~f~~l~~l~~~~l~~n~~~ 736 (808)
.|..++++..+++++|.+.
T Consensus 315 ~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 315 VFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp GBSCGGGCCEEECCSSCEE
T ss_pred HcCCCcccCEEEccCCCcc
Confidence 8888888999999888754
No 20
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=203.82 Aligned_cols=246 Identities=19% Similarity=0.162 Sum_probs=169.7
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccc-cchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQL-WDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
+++++.|++++|.+..+ +..+++|++|+|++|.+..+ |..+.++++|++|+|++|.+....+. |.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 46788888888888776 55678888888888888877 55688888888888888865444334 78888888888
Q ss_pred cCCCCCCccccccccCCCCcCEEecCCCCCCCcC-CCcC-CCCCCCEEeccCCCCCCcccc-cccc--cccEEEecccCC
Q 041551 563 LRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSL-PTSI-HSKHLKELSLRGCSNLKIFPE-ITSC--HMWRLELTKVGI 637 (808)
Q Consensus 563 L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~-~l~~L~~L~L~~~~~l~~~p~-~~~~--~L~~L~L~~n~i 637 (808)
|++|......|..+..+++|++|++++|. +..+ |..+ ++++|+.|+|++|. +..+|. .+.. .|+.|+|++|.+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcC
Confidence 88886666667778888888888888864 4444 3344 67888888888884 344443 2222 277888888887
Q ss_pred eecCc-ccccCCcCcEEEeecCCCccccccc------------------------ccCCCCCCEEEeecCCCCccccCCC
Q 041551 638 KELPS-SIECLSNLQYLYIWDCSELESISSS------------------------IFKLNSLESIDISNCSNLKRFLEIP 692 (808)
Q Consensus 638 ~~lp~-~~~~l~~L~~L~L~~n~~l~~lp~~------------------------~~~l~~L~~L~l~~c~~l~~lp~~~ 692 (808)
..++. .+..+++|+.|++++|..++.+|.. +..+++|+.|++++|. +..++...
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 267 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSM 267 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTS
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhh
Confidence 76644 4667777777777766655555544 4444555555555543 22222110
Q ss_pred CCcCCCCceeeecCCCCCCCCcccccccCCCccccccccccccccee
Q 041551 693 SCNIDGGFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLGRIS 739 (808)
Q Consensus 693 ~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~~~~ 739 (808)
+.....+..+.+.+|.+....+..|..+++|..+++++|.+..+.
T Consensus 268 --~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 312 (477)
T 2id5_A 268 --LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312 (477)
T ss_dssp --CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCC
T ss_pred --ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeC
Confidence 111123456788888888888888999999999999999876654
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=2.5e-19 Score=201.62 Aligned_cols=245 Identities=13% Similarity=0.049 Sum_probs=194.5
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCccc-ccch--hhcccccceeccCCCCCCCCCCC--CCCCCCCc
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQ-LWDD--VQDLVNLKEIDLSRSESLTKLPD--LSRAKNLE 559 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~-l~~~--~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~ 559 (808)
+++|++|++++|.+..+ +..+++|++|+|++|.+.. ++.. +..+++|++|+|++|.+....|. +.++++|+
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 78999999999998776 5678999999999999985 4444 89999999999999988777775 88999999
Q ss_pred EEecCCCCCCccccccccC----------------------------------CCCcCEEecCCCCCCCcCCCc------
Q 041551 560 ILWLRGCLSLVETHSTIQY----------------------------------LNKLEDLDLDYCISLTSLPTS------ 599 (808)
Q Consensus 560 ~L~L~~n~~l~~~p~~~~~----------------------------------l~~L~~L~l~~~~~l~~lp~~------ 599 (808)
+|++++|......|..+.. +++|++|++++|......|..
T Consensus 158 ~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 237 (455)
T 3v47_A 158 VLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIA 237 (455)
T ss_dssp EEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTT
T ss_pred EEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccc
Confidence 9999999766555544433 367899999887533222110
Q ss_pred -------------------------------C---CCCCCCEEeccCCCCCCccccccccc--ccEEEecccCCeec-Cc
Q 041551 600 -------------------------------I---HSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIKEL-PS 642 (808)
Q Consensus 600 -------------------------------~---~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~~l-p~ 642 (808)
+ ..++|+.|++++|......|..+... |+.|+|++|.++.+ |.
T Consensus 238 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 317 (455)
T 3v47_A 238 GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317 (455)
T ss_dssp TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence 0 22589999999997666666665544 99999999999987 55
Q ss_pred ccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccc-cCCCCCcCCCCceeeecCCCCCCCCcccccccC
Q 041551 643 SIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRF-LEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCG 721 (808)
Q Consensus 643 ~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~l-p~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~ 721 (808)
.++++++|+.|+|++|.+.+..|..+..+++|++|++++|.. ..+ |.... ....+..+.+.+|.+....+..|..
T Consensus 318 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFL---GLPNLKELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCC-CEECTTTTT---TCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcc-cccChhhcc---ccccccEEECCCCccccCCHhHhcc
Confidence 799999999999999998666677899999999999999864 444 32222 2234567889999999887888999
Q ss_pred CCcccccccccccccc
Q 041551 722 LKHKSQRNLDRRSLGR 737 (808)
Q Consensus 722 l~~l~~~~l~~n~~~~ 737 (808)
++++..+++++|.+..
T Consensus 394 l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 394 LTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CTTCCEEECCSSCBCC
T ss_pred CCcccEEEccCCCccc
Confidence 9999999999998753
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=2e-20 Score=219.03 Aligned_cols=231 Identities=19% Similarity=0.131 Sum_probs=167.9
Q ss_pred ccCcccceEeecCCCCccc------------------ccchhh--cccccceeccCCCCCCCCCCC-CCCCCCCcEEecC
Q 041551 506 NICAEKLVSLKMPRSKVQQ------------------LWDDVQ--DLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLR 564 (808)
Q Consensus 506 ~~~~~~L~~L~L~~n~l~~------------------l~~~~~--~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~ 564 (808)
+..+++|++|+|++|.++. +|..++ ++++|++|+|++|.+.+.+|. ++++++|++|+|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 3456788888888888887 888877 888888999888888888886 8888888899888
Q ss_pred CCC-CCc-cccccccCC------CCcCEEecCCCCCCCcCCC--cC-CCCCCCEEeccCCCCCCccccccccc--ccEEE
Q 041551 565 GCL-SLV-ETHSTIQYL------NKLEDLDLDYCISLTSLPT--SI-HSKHLKELSLRGCSNLKIFPEITSCH--MWRLE 631 (808)
Q Consensus 565 ~n~-~l~-~~p~~~~~l------~~L~~L~l~~~~~l~~lp~--~~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~ 631 (808)
+|. ..+ .+|..++++ ++|++|++++|. ++.+|. .+ .+++|++|++++|...+.+| .+... |+.|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 886 444 688877776 888888888864 558887 55 78888899988886554777 33332 88888
Q ss_pred ecccCCeecCcccccCCc-CcEEEeecCCCcccccccccCCC--CCCEEEeecCCCCccccCCCC----CcCCCCceeee
Q 041551 632 LTKVGIKELPSSIECLSN-LQYLYIWDCSELESISSSIFKLN--SLESIDISNCSNLKRFLEIPS----CNIDGGFAFCI 704 (808)
Q Consensus 632 L~~n~i~~lp~~~~~l~~-L~~L~L~~n~~l~~lp~~~~~l~--~L~~L~l~~c~~l~~lp~~~~----~~~~~~~~~~l 704 (808)
|++|.++.+|..+..+++ |+.|++++|.+. .+|..+..++ +|+.|++++|.....+|.... ..+....+..+
T Consensus 360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp CCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred CCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 888888888888888888 888888888874 7887776644 788888888865554444222 11122234556
Q ss_pred cCCCCCCCCcccccccCCCccccccccccccccee
Q 041551 705 VVPHCWEPCETHEVFCGLKHKSQRNLDRRSLGRIS 739 (808)
Q Consensus 705 ~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~~~~ 739 (808)
.+.+|.+....+..|..++++..+++++|.+..++
T Consensus 439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~ 473 (636)
T 4eco_A 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473 (636)
T ss_dssp ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCC
T ss_pred ECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcC
Confidence 66666666544445555666666666666655443
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=3.4e-19 Score=200.16 Aligned_cols=240 Identities=19% Similarity=0.172 Sum_probs=195.6
Q ss_pred eeEEEecCCCCCCc-ccCcccceEeecCCCCccccc-chhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCC
Q 041551 492 VRHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLW-DDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLS 568 (808)
Q Consensus 492 Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~ 568 (808)
.+.++..+..+..+ ...+.+|+.|+|++|++..++ ..|.++++|++|+|++|.+....|. |.++++|++|+|++|..
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 34566777777777 445679999999999999884 5699999999999999987666655 99999999999999965
Q ss_pred CccccccccCCCCcCEEecCCCCCCCcCCCcC--CCCCCCEEeccCCCCCCcccccc-cc--cccEEEecccCCeecCcc
Q 041551 569 LVETHSTIQYLNKLEDLDLDYCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEIT-SC--HMWRLELTKVGIKELPSS 643 (808)
Q Consensus 569 l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~-~~--~L~~L~L~~n~i~~lp~~ 643 (808)
....+..+..+++|++|+|++| .++.+|... .+++|+.|++++|+.++.+|... .. .|+.|+|++|.++.+|.
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~- 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN- 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-
T ss_pred CccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-
Confidence 5444445899999999999996 577787643 88999999999998888887643 22 39999999999999975
Q ss_pred cccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCCC
Q 041551 644 IECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLK 723 (808)
Q Consensus 644 ~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~ 723 (808)
+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|. +..++... +-....+..+.+.+|.+....+..|..++
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNA--FDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTT--TTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHH--hcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 8899999999999999977778889999999999999986 44443211 11122456789999999988888899999
Q ss_pred ccccccccccccc
Q 041551 724 HKSQRNLDRRSLG 736 (808)
Q Consensus 724 ~l~~~~l~~n~~~ 736 (808)
++..+++++|.+.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 9999999999754
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=3.5e-19 Score=199.34 Aligned_cols=222 Identities=20% Similarity=0.215 Sum_probs=179.9
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccc-hhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWD-DVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
+++++.|++++|.+..+ +..+++|++|+|++|.+..++. .|.++++|++|+|++|.+....+. |..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 57899999999998877 5678999999999999998864 589999999999999976555444 99999999999
Q ss_pred cCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC--CCCCCCEEeccCCCCCCcccccccc-cccEEEecccCCee
Q 041551 563 LRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITSC-HMWRLELTKVGIKE 639 (808)
Q Consensus 563 L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~-~L~~L~L~~n~i~~ 639 (808)
|++|......+..+.++++|++|++++|+.++.+|... ++++|++|+|++| .+..+|..... .|+.|+|++|.++.
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCc
Confidence 99996554444578999999999999999999988753 7899999999999 56677765443 39999999999998
Q ss_pred c-CcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCc
Q 041551 640 L-PSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCE 714 (808)
Q Consensus 640 l-p~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~ 714 (808)
+ |..|.++++|+.|+|++|.+....|..+..+++|+.|+|++|. +..+|...... ...+..+.+.+|.+.|.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~--l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTP--LHHLERIHLHHNPWNCN 294 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSS--CTTCCEEECCSSCEECS
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhcc--ccCCCEEEcCCCCccCC
Confidence 7 6679999999999999999866667779999999999999984 55554322111 12345577778776653
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=3.3e-19 Score=191.67 Aligned_cols=239 Identities=14% Similarity=0.091 Sum_probs=153.3
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccc-cchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQL-WDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
+++++.|++++|.+..+ +..+.+|++|++++|.++.+ |..+.++++|++|+|++|.+. .+|. +. ++|++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEE
Confidence 46788888888877766 45677788888888888876 556788888888888888644 5553 33 7788888
Q ss_pred cCCCCCCccccccccCCCCcCEEecCCCCCC--CcCCCcC-CCCCCCEEeccCCCCCCcccccccccccEEEecccCCee
Q 041551 563 LRGCLSLVETHSTIQYLNKLEDLDLDYCISL--TSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKE 639 (808)
Q Consensus 563 L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l--~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~ 639 (808)
+++|......+..+.++++|+.|++++|... ...|..+ .+ +|++|++++|. +..+|......|+.|++++|.++.
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHLDHNKIQA 207 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSSCCCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEECCCCcCCc
Confidence 8887544333344777888888888876432 1334434 33 77777777773 445665555557777777777776
Q ss_pred cC-cccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCccccc
Q 041551 640 LP-SSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEV 718 (808)
Q Consensus 640 lp-~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 718 (808)
++ ..+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|. +..+|.. +.....+..+.+.+|.+....+..
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~---l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAG---LPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTT---GGGCTTCCEEECCSSCCCBCCTTS
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChh---hhcCccCCEEECCCCCCCccChhH
Confidence 64 456777777777777776644444456677777777777763 4444432 212223445666666666655555
Q ss_pred ccCC------Cccccccccccccc
Q 041551 719 FCGL------KHKSQRNLDRRSLG 736 (808)
Q Consensus 719 f~~l------~~l~~~~l~~n~~~ 736 (808)
|+.. ..+..+++.+|.+.
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSSSSC
T ss_pred ccccccccccccccceEeecCccc
Confidence 5543 44556666666544
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=4.6e-19 Score=198.35 Aligned_cols=239 Identities=18% Similarity=0.175 Sum_probs=195.7
Q ss_pred eeEEEecCCCCCCc-ccCcccceEeecCCCCccccc-chhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCC
Q 041551 492 VRHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLW-DDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLS 568 (808)
Q Consensus 492 Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~ 568 (808)
.+.++..+..++.+ .....+++.|+|++|++..++ ..+.++++|++|+|++|.+....+. |.++++|++|+|++|..
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 45677777777777 445688999999999999886 4699999999999999986655554 99999999999999954
Q ss_pred Ccccc-ccccCCCCcCEEecCCCCCCCcCCCc-C-CCCCCCEEeccCCCCCCcccccc-cc--cccEEEecccCCeecCc
Q 041551 569 LVETH-STIQYLNKLEDLDLDYCISLTSLPTS-I-HSKHLKELSLRGCSNLKIFPEIT-SC--HMWRLELTKVGIKELPS 642 (808)
Q Consensus 569 l~~~p-~~~~~l~~L~~L~l~~~~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~p~~~-~~--~L~~L~L~~n~i~~lp~ 642 (808)
. .+| ..+..+++|++|+|++| .++.+|.. + .+++|++|+|++|+.+..++... .. .|+.|+|++|.++.+|.
T Consensus 125 ~-~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 125 T-TIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN 202 (440)
T ss_dssp S-SCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC
T ss_pred C-eeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc
Confidence 4 555 46899999999999996 57777764 3 78999999999988888877633 22 39999999999999985
Q ss_pred ccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCC
Q 041551 643 SIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGL 722 (808)
Q Consensus 643 ~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l 722 (808)
+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|. +..++... +.....+..+.+.+|.+....+..|..+
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNA--FDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTS--STTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred -cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhh--hcCCCCCCEEECCCCCCCccChhHhccc
Confidence 8999999999999999866668889999999999999985 44443321 1112345678999999998888899999
Q ss_pred Cccccccccccccc
Q 041551 723 KHKSQRNLDRRSLG 736 (808)
Q Consensus 723 ~~l~~~~l~~n~~~ 736 (808)
+++..+++++|.+.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 99999999999764
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=5.2e-20 Score=219.56 Aligned_cols=181 Identities=18% Similarity=0.165 Sum_probs=97.8
Q ss_pred CcccceEeecCCCCccc------------------ccchhh--cccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCC
Q 041551 508 CAEKLVSLKMPRSKVQQ------------------LWDDVQ--DLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGC 566 (808)
Q Consensus 508 ~~~~L~~L~L~~n~l~~------------------l~~~~~--~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n 566 (808)
.+++|++|+|++|.++. +|+.++ ++++|++|+|++|.+.+.+|. ++++++|+.|+|++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 44555666666666555 555544 666666666666655555554 556666666666665
Q ss_pred C-CCc-cccccccCCC-------CcCEEecCCCCCCCcCCC--cC-CCCCCCEEeccCCCCCCccccccccc--ccEEEe
Q 041551 567 L-SLV-ETHSTIQYLN-------KLEDLDLDYCISLTSLPT--SI-HSKHLKELSLRGCSNLKIFPEITSCH--MWRLEL 632 (808)
Q Consensus 567 ~-~l~-~~p~~~~~l~-------~L~~L~l~~~~~l~~lp~--~~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L 632 (808)
. ..+ .+|..+++++ +|++|+|++|. +..+|. .+ ++++|+.|+|++|... .+| .+..+ |+.|+|
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 4 332 3554444333 66666666543 335555 33 5566666666665432 555 22222 566666
Q ss_pred cccCCeecCcccccCCc-CcEEEeecCCCcccccccccCCCC--CCEEEeecCCCCccccCCC
Q 041551 633 TKVGIKELPSSIECLSN-LQYLYIWDCSELESISSSIFKLNS--LESIDISNCSNLKRFLEIP 692 (808)
Q Consensus 633 ~~n~i~~lp~~~~~l~~-L~~L~L~~n~~l~~lp~~~~~l~~--L~~L~l~~c~~l~~lp~~~ 692 (808)
++|.++.+|..+..+++ |+.|+|++|.+ ..+|..+..++. |+.|++++|.....+|.++
T Consensus 603 s~N~l~~lp~~l~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~ 664 (876)
T 4ecn_A 603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664 (876)
T ss_dssp CSSCCSCCCTTSCEECTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred cCCccccchHHHhhccccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCcCCCccccch
Confidence 66666666655666655 66666665554 355555444432 6666666655444444433
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=5.3e-19 Score=190.10 Aligned_cols=239 Identities=15% Similarity=0.143 Sum_probs=145.9
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEec
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWL 563 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L 563 (808)
+++|++|++++|.+..+ +..+++|++|++++|.+..+|..+. ++|++|++++|.+....+. +.++++|+.|++
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 66777777777776655 4456677777777777777766554 6777777777765443333 677777777777
Q ss_pred CCCCCC--ccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCccccccccc--ccEEEecccCCee
Q 041551 564 RGCLSL--VETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIKE 639 (808)
Q Consensus 564 ~~n~~l--~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~~ 639 (808)
++|... ...|..+..+ +|+.|++++| .++.+|..+. ++|++|++++|......|..+... |+.|+|++|.++.
T Consensus 155 ~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp CSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred CCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 777442 2345556666 7777777774 4566665443 567777777775443333333332 7777777777776
Q ss_pred cCc-ccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCC----CCceeeecCCCCCCC--
Q 041551 640 LPS-SIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNID----GGFAFCIVVPHCWEP-- 712 (808)
Q Consensus 640 lp~-~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~----~~~~~~l~l~~~~~~-- 712 (808)
++. .+..+++|+.|+|++|.+ ..+|..+..+++|+.|++++|+ +..+|........ ......+.+.+|.+.
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW 309 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG
T ss_pred CChhHhhCCCCCCEEECCCCcC-eecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCccccc
Confidence 654 577777777777777765 4677667777777777777764 4444332111100 112334566666655
Q ss_pred CcccccccCCCccccccccccc
Q 041551 713 CETHEVFCGLKHKSQRNLDRRS 734 (808)
Q Consensus 713 ~~~~~~f~~l~~l~~~~l~~n~ 734 (808)
+..+..|..++.+..+++++|.
T Consensus 310 ~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 310 EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GSCGGGGTTBCCSTTEEC----
T ss_pred ccCcccccccchhhhhhccccc
Confidence 3455666667777777776653
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.81 E-value=2.7e-19 Score=209.43 Aligned_cols=240 Identities=12% Similarity=0.089 Sum_probs=176.6
Q ss_pred CCceeEEEecCCCCC-Cc--ccCcccceEeecCCCCcccccchhhcccc-cceeccCCCCCCCCCCC-CCCC--CCCcEE
Q 041551 489 FAEVRHLEWARCPLK-TL--NICAEKLVSLKMPRSKVQQLWDDVQDLVN-LKEIDLSRSESLTKLPD-LSRA--KNLEIL 561 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~-~l--~~~~~~L~~L~L~~n~l~~l~~~~~~l~~-L~~L~L~~n~~~~~~p~-~~~l--~~L~~L 561 (808)
+++|+.|++++|.+. .+ +..+++|+.|++++|.+..+|..+..+++ |++|++++|.+. .+|. +..+ ++|++|
T Consensus 329 l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L 407 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAI 407 (636)
T ss_dssp CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEE
T ss_pred CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEE
Confidence 678888888888877 55 44567888888888888888888888888 888888888755 6775 5554 388888
Q ss_pred ecCCCCCCcccccccc-------CCCCcCEEecCCCCCCCcCCCcC--CCCCCCEEeccCCCCCCcccccccc-------
Q 041551 562 WLRGCLSLVETHSTIQ-------YLNKLEDLDLDYCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITSC------- 625 (808)
Q Consensus 562 ~L~~n~~l~~~p~~~~-------~l~~L~~L~l~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~------- 625 (808)
++++|...+.+|..+. .+++|++|++++| .++.+|..+ .+++|++|+|++|... .+|.....
T Consensus 408 ~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~ 485 (636)
T 4eco_A 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFK 485 (636)
T ss_dssp ECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECT
T ss_pred ECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccccc
Confidence 8888877777777777 7788888888885 466788765 5788888888888544 66654332
Q ss_pred ---cccEEEecccCCeecCcccc--cCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCC------CCccccCCCCC
Q 041551 626 ---HMWRLELTKVGIKELPSSIE--CLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCS------NLKRFLEIPSC 694 (808)
Q Consensus 626 ---~L~~L~L~~n~i~~lp~~~~--~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~------~l~~lp~~~~~ 694 (808)
.|+.|+|++|.++.+|..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|++++|+ ..+.+|....
T Consensus 486 ~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~- 563 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT- 563 (636)
T ss_dssp TGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG-
T ss_pred ccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh-
Confidence 58888888888888888876 88888888888888755 88888888888888886543 3334443222
Q ss_pred cCCCCceeeecCCCCCCCCcccccccCCCcccccccccccccce
Q 041551 695 NIDGGFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLGRI 738 (808)
Q Consensus 695 ~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~~~ 738 (808)
....+..+.+.+|.+. ..|..++ +.+..+++++|.+..+
T Consensus 564 --~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 564 --LCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp --GCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred --cCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccc
Confidence 2224456777778774 4444444 6777888888876543
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=4.3e-19 Score=207.32 Aligned_cols=247 Identities=18% Similarity=0.129 Sum_probs=165.8
Q ss_pred CCceeEEEecCCCCCCc---ccCcccceEeecCCCCcccc-cchhhcccccceeccCCCCCCCCCCC--CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL---NICAEKLVSLKMPRSKVQQL-WDDVQDLVNLKEIDLSRSESLTKLPD--LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~ 562 (808)
+++|++|++++|.+..+ ...+++|++|++++|.+..+ |..+..+++|++|++++|.....+|. +..+++|++|+
T Consensus 277 l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 277 FSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp CTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred ccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 66777788877777766 44567777788887777766 34577777788888887776655553 77778888888
Q ss_pred cCCCCCCccc--cccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccccc-ccc--cccEEEecccC
Q 041551 563 LRGCLSLVET--HSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEI-TSC--HMWRLELTKVG 636 (808)
Q Consensus 563 L~~n~~l~~~--p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~-~~~--~L~~L~L~~n~ 636 (808)
+++|...... |..+..+++|++|++++|......|..+ .+++|++|++++|......|.. +.. .|+.|++++|.
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 8877544333 5567777888888888765433334444 6777888888877544443332 222 27888888888
Q ss_pred Ceec-CcccccCCcCcEEEeecCCCccc-c--cccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCC
Q 041551 637 IKEL-PSSIECLSNLQYLYIWDCSELES-I--SSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEP 712 (808)
Q Consensus 637 i~~l-p~~~~~l~~L~~L~L~~n~~l~~-l--p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~ 712 (808)
+... |..++.+++|+.|++++|.+.+. + +..+..+++|+.|++++|......|..... ...+..+.+++|.+.
T Consensus 437 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS---LKMMNHVDLSHNRLT 513 (606)
T ss_dssp CBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT---CTTCCEEECCSSCCC
T ss_pred cCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcc---ccCCCEEECCCCccC
Confidence 7754 55577788888888888876542 2 245777888888888887533222222211 124456778888888
Q ss_pred CcccccccCCCccccccccccccccee
Q 041551 713 CETHEVFCGLKHKSQRNLDRRSLGRIS 739 (808)
Q Consensus 713 ~~~~~~f~~l~~l~~~~l~~n~~~~~~ 739 (808)
...+..|..++.+ .+++++|.+..++
T Consensus 514 ~~~~~~l~~l~~L-~L~L~~N~l~~~~ 539 (606)
T 3t6q_A 514 SSSIEALSHLKGI-YLNLASNHISIIL 539 (606)
T ss_dssp GGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred cCChhHhCccccc-EEECcCCcccccC
Confidence 7777888888888 8888888776443
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=2.5e-19 Score=190.33 Aligned_cols=192 Identities=21% Similarity=0.190 Sum_probs=100.3
Q ss_pred CceeEEEecCCCCCCc----ccCcccceEeecCCCCcccc---cchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEE
Q 041551 490 AEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQL---WDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEIL 561 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L 561 (808)
++|++|++++|.+..+ +..+++|++|+|++|.+..+ +..+..+++|++|+|++|.+. .+|. +..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 4566666666655554 23455566666666665543 344555566666666666433 2332 5556666666
Q ss_pred ecCCCCCCcccc--ccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCC-ccccccccc--ccEEEeccc
Q 041551 562 WLRGCLSLVETH--STIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLK-IFPEITSCH--MWRLELTKV 635 (808)
Q Consensus 562 ~L~~n~~l~~~p--~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~-~~p~~~~~~--L~~L~L~~n 635 (808)
++++|.. ..++ ..+..+++|++|++++|......|..+ .+++|++|++++|.... .+|..+... |+.|+|++|
T Consensus 107 ~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCcc-cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 6666532 2232 245556666666666644333333333 45566666666653322 233333322 556666666
Q ss_pred CCeec-CcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCC
Q 041551 636 GIKEL-PSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCS 683 (808)
Q Consensus 636 ~i~~l-p~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~ 683 (808)
.++.+ |..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 66554 4445556666666665555533333345555666666666554
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.80 E-value=1.1e-18 Score=192.08 Aligned_cols=240 Identities=17% Similarity=0.104 Sum_probs=131.1
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCC-C-CCCCCCCcEE
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLP-D-LSRAKNLEIL 561 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p-~-~~~l~~L~~L 561 (808)
+++|++|++++|.+..+ +..+++|++|+|++|.+..+++. +.++++|++|+|++|.+. .+| . +.++++|++|
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence 45566666666655544 34455666666666666655433 566666666666666433 333 2 4566666666
Q ss_pred ecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcCCCC-------------------CCCEEeccCCCCCCccccc
Q 041551 562 WLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSK-------------------HLKELSLRGCSNLKIFPEI 622 (808)
Q Consensus 562 ~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~-------------------~L~~L~L~~~~~l~~~p~~ 622 (808)
++++|......|..+..+++|++|++++|. ++.++.. .++ +|+.|++++|. +..+|..
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~-l~~~~~~ 223 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGP 223 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCGG-GCTTCSEEECCSSCCSEEECCSSCSEEECCSSC-CCEEECC
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCc-CCccccc-cccccceeecccccccccCCCCcceEEECCCCe-eeecccc
Confidence 666664443334445666666666666642 3333211 122 33444444432 2223333
Q ss_pred ccccccEEEecccCCeecCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCcee
Q 041551 623 TSCHMWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAF 702 (808)
Q Consensus 623 ~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~ 702 (808)
....|+.|++++|.++.+ ..+..+++|+.|+|++|.+.+..|..+..+++|+.|++++|. +..+|..... ...+.
T Consensus 224 ~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~---l~~L~ 298 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQP---IPTLK 298 (390)
T ss_dssp CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSC---CTTCC
T ss_pred ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCC---CCCCC
Confidence 333466666666666655 346677777777777777655556667777777777777764 4445433211 11334
Q ss_pred eecCCCCCCCCcccccccCCCcccccccccccccce
Q 041551 703 CIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLGRI 738 (808)
Q Consensus 703 ~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~~~ 738 (808)
.+.+.+|.+.. .+..+..++++..+++++|.+..+
T Consensus 299 ~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 299 VLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp EEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC
T ss_pred EEECCCCccee-cCccccccCcCCEEECCCCcccee
Confidence 45666666553 233345556666666666665443
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=6.3e-19 Score=205.09 Aligned_cols=242 Identities=15% Similarity=0.067 Sum_probs=147.2
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
+++|++|++++|.+..+ +..+.+|++|+|++|.+..+|+. ++++++|++|+|++|.+....+. |+++++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 56777777777776665 44567777777777777766554 57777777777777765433334 57777777777
Q ss_pred cCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCC------------------CCCccccccc
Q 041551 563 LRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCS------------------NLKIFPEITS 624 (808)
Q Consensus 563 L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~------------------~l~~~p~~~~ 624 (808)
|++|......|..++++++|++|++++| .++.+|.. .+++|+.|++++|. .+..+|....
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~ 231 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCCGG-GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcChh-hhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence 7777555555556777777777777775 34444311 22333333333321 1222222222
Q ss_pred ccccEEEecccCCeecCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeee
Q 041551 625 CHMWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCI 704 (808)
Q Consensus 625 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l 704 (808)
..|+.|+|++|.++.. ..++.+++|+.|+|++|.+.+..|..++.+++|+.|+|++|. +..+|..... ...+..+
T Consensus 232 ~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~---l~~L~~L 306 (597)
T 3oja_B 232 VELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQP---IPTLKVL 306 (597)
T ss_dssp SCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSSC---CTTCCEE
T ss_pred CCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCccccc---CCCCcEE
Confidence 3366666666666653 457777788888888777766667777778888888887764 4455443321 1134455
Q ss_pred cCCCCCCCCcccccccCCCcccccccccccccce
Q 041551 705 VVPHCWEPCETHEVFCGLKHKSQRNLDRRSLGRI 738 (808)
Q Consensus 705 ~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~~~ 738 (808)
.+.+|.+.. .|..+..++++..+++++|.+..+
T Consensus 307 ~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 307 DLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp ECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC
T ss_pred ECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc
Confidence 666666653 333455566666666666665443
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=1.4e-18 Score=187.94 Aligned_cols=238 Identities=16% Similarity=0.204 Sum_probs=152.8
Q ss_pred CCceeEEEecCCCCCCc--ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCC
Q 041551 489 FAEVRHLEWARCPLKTL--NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGC 566 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n 566 (808)
+++|++|++++|.+..+ +..+++|++|++++|.+..++. +..+++|++|++++|.....++.+..+++|++|++++|
T Consensus 87 l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 87 LVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES 165 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS
T ss_pred CCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC
Confidence 55666666666666655 4456666666666666666654 66666666666666665555555666667777777666
Q ss_pred CCCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCccccc
Q 041551 567 LSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSSIEC 646 (808)
Q Consensus 567 ~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~ 646 (808)
.. ..++. +..+++|+.|++++| .+..++....+++|+.|++++|......+-.....|+.|++++|.++.+|. +..
T Consensus 166 ~~-~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~ 241 (347)
T 4fmz_A 166 KV-KDVTP-IANLTDLYSLSLNYN-QIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LAN 241 (347)
T ss_dssp CC-CCCGG-GGGCTTCSEEECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTT
T ss_pred Cc-CCchh-hccCCCCCEEEccCC-cccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhc
Confidence 33 23332 666677777777764 355555533666777777777643332221112237888888888877766 777
Q ss_pred CCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCCCccc
Q 041551 647 LSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLKHKS 726 (808)
Q Consensus 647 l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~ 726 (808)
+++|+.|++++|.+ +.++ .+..+++|+.|++++|. +..+|.+. ....+..+.+.+|.+....+..|..++++.
T Consensus 242 l~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 242 LSQLTWLEIGTNQI-SDIN-AVKDLTKLKMLNVGSNQ-ISDISVLN----NLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp CTTCCEEECCSSCC-CCCG-GGTTCTTCCEEECCSSC-CCCCGGGG----GCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred CCCCCEEECCCCcc-CCCh-hHhcCCCcCEEEccCCc-cCCChhhc----CCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 88888888877766 4444 47777888888888873 44443221 112345577778877777777778888888
Q ss_pred ccccccccccce
Q 041551 727 QRNLDRRSLGRI 738 (808)
Q Consensus 727 ~~~l~~n~~~~~ 738 (808)
.+++++|.+..+
T Consensus 315 ~L~L~~n~l~~~ 326 (347)
T 4fmz_A 315 TLFLSQNHITDI 326 (347)
T ss_dssp EEECCSSSCCCC
T ss_pred EEEccCCccccc
Confidence 888888876654
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=9.7e-19 Score=208.66 Aligned_cols=244 Identities=14% Similarity=0.080 Sum_probs=155.5
Q ss_pred CCceeEEEecCCC-CCC--c---c-------cCcccceEeecCCCCcccccc--hhhcccccceeccCCCCCCCCCCCCC
Q 041551 489 FAEVRHLEWARCP-LKT--L---N-------ICAEKLVSLKMPRSKVQQLWD--DVQDLVNLKEIDLSRSESLTKLPDLS 553 (808)
Q Consensus 489 ~~~Lr~L~l~~~~-l~~--l---~-------~~~~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~L~~n~~~~~~p~~~ 553 (808)
+++|+.|++++|. +.. + . ..+++|+.|+|++|.+..+|. .+.++++|+.|+|++|.+. .+|.++
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~ 592 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFG 592 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhc
Confidence 6677888888776 654 2 1 233477788888888777777 6777778888888877655 666777
Q ss_pred CCCCCcEEecCCCCCCccccccccCCCC-cCEEecCCCCCCCcCCCcC-CC--CCCCEEeccCCCCCCc-----------
Q 041551 554 RAKNLEILWLRGCLSLVETHSTIQYLNK-LEDLDLDYCISLTSLPTSI-HS--KHLKELSLRGCSNLKI----------- 618 (808)
Q Consensus 554 ~l~~L~~L~L~~n~~l~~~p~~~~~l~~-L~~L~l~~~~~l~~lp~~~-~l--~~L~~L~L~~~~~l~~----------- 618 (808)
.+++|+.|+|++|... .+|..+.++++ |+.|+|++|. ++.+|..+ .+ ++|+.|+|++|.....
T Consensus 593 ~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~ 670 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670 (876)
T ss_dssp TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTC
T ss_pred CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccc
Confidence 7777777777777544 77777777777 7777777754 55666554 22 2356666665543332
Q ss_pred -----------------cccccc---ccccEEEecccCCeecCccccc--------CCcCcEEEeecCCCccccccccc-
Q 041551 619 -----------------FPEITS---CHMWRLELTKVGIKELPSSIEC--------LSNLQYLYIWDCSELESISSSIF- 669 (808)
Q Consensus 619 -----------------~p~~~~---~~L~~L~L~~n~i~~lp~~~~~--------l~~L~~L~L~~n~~l~~lp~~~~- 669 (808)
+|.... ..|+.|+|++|.|+.+|..+.. +++|+.|+|++|.+ ..+|..+.
T Consensus 671 ~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L-~~lp~~l~~ 749 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRA 749 (876)
T ss_dssp CCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCC-CCCCGGGST
T ss_pred cCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCC-ccchHHhhh
Confidence 232221 1266666666666666655332 22677777777765 36676665
Q ss_pred -CCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCC------CCCCCcccccccCCCcccccccccccccceee
Q 041551 670 -KLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPH------CWEPCETHEVFCGLKHKSQRNLDRRSLGRISY 740 (808)
Q Consensus 670 -~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~------~~~~~~~~~~f~~l~~l~~~~l~~n~~~~~~~ 740 (808)
.+++|+.|+|++|. +..+|.... ....+..+.+.+ |.+....|..|+.+++|..+++++|.++.++.
T Consensus 750 ~~l~~L~~L~Ls~N~-L~~lp~~l~---~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~ 823 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNC-FSSFPTQPL---NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE 823 (876)
T ss_dssp TTCTTCCEEECCSSC-CSSCCCGGG---GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCS
T ss_pred ccCCCcCEEEeCCCC-CCccchhhh---cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCH
Confidence 67777777777764 333443222 222334445543 66666777788888888888888888866654
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=1.3e-18 Score=182.83 Aligned_cols=193 Identities=19% Similarity=0.234 Sum_probs=123.3
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccc-cchhhcccccceeccCCCCCCCCC-CC-CCCCCCCcEE
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQL-WDDVQDLVNLKEIDLSRSESLTKL-PD-LSRAKNLEIL 561 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~~~~~~-p~-~~~l~~L~~L 561 (808)
+++|+.|++++|.+..+ +..+++|++|++++|.+..+ |..+..+++|++|+|++|..+..+ |. +..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 45677777777776655 34556777777777777766 445777777777777777534444 33 6677777777
Q ss_pred ecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCc-C-CCCCCCEEeccCCCCCCcccc-cccc--cccEEEecccC
Q 041551 562 WLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTS-I-HSKHLKELSLRGCSNLKIFPE-ITSC--HMWRLELTKVG 636 (808)
Q Consensus 562 ~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~p~-~~~~--~L~~L~L~~n~ 636 (808)
++++|......|..+.++++|++|++++| .++.+|.. + .+++|++|++++|. ++.+|. .+.. .|+.|+|++|.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCc
Confidence 77777554444556677777777777774 35555543 3 56777777777763 333433 2222 27777777777
Q ss_pred Ceec-CcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCC
Q 041551 637 IKEL-PSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCS 683 (808)
Q Consensus 637 i~~l-p~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~ 683 (808)
++.+ |..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 7665 5567777777777777776644333446677777777777765
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=2.8e-18 Score=185.63 Aligned_cols=234 Identities=16% Similarity=0.178 Sum_probs=140.7
Q ss_pred CCceeEEEecCCCCCCc--ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCC
Q 041551 489 FAEVRHLEWARCPLKTL--NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGC 566 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n 566 (808)
+++|++|++++|.+..+ +..+++|++|++++|.+..++ .+..+++|++|++++|.+ ..+|.+..+++|+.|++++|
T Consensus 65 ~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i-~~~~~~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNI-SDISPLANLTKMYSLNLGAN 142 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCC-CCCGGGTTCTTCCEEECTTC
T ss_pred cCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcc-cCchhhccCCceeEEECCCC
Confidence 55666666666666555 445566666666666666653 466666666666666653 33444666666666666666
Q ss_pred CCCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCccccccc-ccccEEEecccCCeecCcccc
Q 041551 567 LSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITS-CHMWRLELTKVGIKELPSSIE 645 (808)
Q Consensus 567 ~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~-~~L~~L~L~~n~i~~lp~~~~ 645 (808)
.....++ .+..+++|++|++++| .+..++....+++|++|++++|. +..++.... ..|+.|++++|.+..++. +.
T Consensus 143 ~~~~~~~-~~~~l~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~ 218 (347)
T 4fmz_A 143 HNLSDLS-PLSNMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVNQITDITP-VA 218 (347)
T ss_dssp TTCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GG
T ss_pred CCccccc-chhhCCCCcEEEecCC-CcCCchhhccCCCCCEEEccCCc-ccccccccCCCccceeecccCCCCCCch-hh
Confidence 5444433 3666666666666664 34444443356667777776663 333333221 126777777777766655 66
Q ss_pred cCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCCCcc
Q 041551 646 CLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLKHK 725 (808)
Q Consensus 646 ~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l 725 (808)
.+++|+.|++++|.+ ..+|. +..+++|++|++++|. +..++.+. ....+..+.+.+|.+... ..+..++++
T Consensus 219 ~~~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~----~l~~L~~L~l~~n~l~~~--~~~~~l~~L 289 (347)
T 4fmz_A 219 NMTRLNSLKIGNNKI-TDLSP-LANLSQLTWLEIGTNQ-ISDINAVK----DLTKLKMLNVGSNQISDI--SVLNNLSQL 289 (347)
T ss_dssp GCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSC-CCCCGGGT----TCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred cCCcCCEEEccCCcc-CCCcc-hhcCCCCCEEECCCCc-cCCChhHh----cCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence 777777777777766 44444 6677777777777763 33433211 112344566777766654 346677777
Q ss_pred cccccccccccc
Q 041551 726 SQRNLDRRSLGR 737 (808)
Q Consensus 726 ~~~~l~~n~~~~ 737 (808)
..+++++|.+..
T Consensus 290 ~~L~L~~n~l~~ 301 (347)
T 4fmz_A 290 NSLFLNNNQLGN 301 (347)
T ss_dssp SEEECCSSCCCG
T ss_pred CEEECcCCcCCC
Confidence 777887777653
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.79 E-value=2.1e-18 Score=181.19 Aligned_cols=217 Identities=15% Similarity=0.084 Sum_probs=168.2
Q ss_pred eEEEecCCCCCCc-ccCcccceEeecCCCCcccccc-hhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCC
Q 041551 493 RHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWD-DVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSL 569 (808)
Q Consensus 493 r~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l 569 (808)
+.++..++.++.+ ...+++|++|++++|.+..++. .+..+++|++|+|++|.+....|. +.++++|++|++++|..+
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 5677788888887 4457899999999999998875 489999999999999987666565 999999999999999745
Q ss_pred ccc-cccccCCCCcCEEecCCCCCCCcC-CCcC-CCCCCCEEeccCCCCCCcccccccc--cccEEEecccCCeecCcc-
Q 041551 570 VET-HSTIQYLNKLEDLDLDYCISLTSL-PTSI-HSKHLKELSLRGCSNLKIFPEITSC--HMWRLELTKVGIKELPSS- 643 (808)
Q Consensus 570 ~~~-p~~~~~l~~L~~L~l~~~~~l~~l-p~~~-~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~~lp~~- 643 (808)
..+ |..+..+++|++|++++|. ++.+ |..+ ++++|++|++++|......+..+.. .|+.|+|++|.++.+|..
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 172 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence 555 6779999999999999975 5555 4445 7899999999999544333333333 399999999999998774
Q ss_pred cccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcC-CCCceeeecCCCCCCCCc
Q 041551 644 IECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNI-DGGFAFCIVVPHCWEPCE 714 (808)
Q Consensus 644 ~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~-~~~~~~~l~l~~~~~~~~ 714 (808)
+..+++|+.|++++|.+.+..|..+..+++|+.|++++|. +..+|. ..+ ....+..+.+.+|.+.|.
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPT---EALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCH---HHHTTCTTCCEEECCSSCEECS
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCH---HHcccCcccCEEeccCCCccCC
Confidence 8899999999999999877778889999999999999984 333332 111 112334566677766553
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.79 E-value=1.3e-18 Score=203.36 Aligned_cols=252 Identities=18% Similarity=0.137 Sum_probs=205.4
Q ss_pred ccCCCCC-CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcc-cccch-hhcccccceeccCCCCCCCCC--CC-
Q 041551 482 KFSIGVP-FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQ-QLWDD-VQDLVNLKEIDLSRSESLTKL--PD- 551 (808)
Q Consensus 482 ~~~~~~~-~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~-~l~~~-~~~l~~L~~L~L~~n~~~~~~--p~- 551 (808)
.+|..+. .++|++|++++|.+..+ +..+++|+.|++++|.+. .+|.. +..+++|++|++++|.+.... |.
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 3555555 78999999999998876 567889999999999987 66655 899999999999999876554 43
Q ss_pred CCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCc-C-CCCCCCEEeccCCCCCCccccccccc--c
Q 041551 552 LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTS-I-HSKHLKELSLRGCSNLKIFPEITSCH--M 627 (808)
Q Consensus 552 ~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L 627 (808)
+..+++|++|++++|......|..+..+++|+.|++++|......|.. + .+++|++|++++|......|..+... |
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 899999999999999777667888999999999999997655555544 4 78999999999997666666655443 9
Q ss_pred cEEEecccCCee--cC--cccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceee
Q 041551 628 WRLELTKVGIKE--LP--SSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFC 703 (808)
Q Consensus 628 ~~L~L~~n~i~~--lp--~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~ 703 (808)
+.|++++|.+.. +| ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|......|.....+ ..+ .
T Consensus 452 ~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l---~~L-~ 527 (606)
T 3t6q_A 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL---KGI-Y 527 (606)
T ss_dssp CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC---CSC-E
T ss_pred CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc---ccc-E
Confidence 999999999974 33 568999999999999999877778889999999999999996544444332222 223 7
Q ss_pred ecCCCCCCCCcccccccCCCcccccccccccccc
Q 041551 704 IVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLGR 737 (808)
Q Consensus 704 l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~~ 737 (808)
+.+.+|.+....+..|..++.+..+++++|.+..
T Consensus 528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred EECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 8899999998888889999999999999998753
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=8.8e-19 Score=186.07 Aligned_cols=240 Identities=17% Similarity=0.154 Sum_probs=185.1
Q ss_pred EEEecCCCCCCc-ccCcccceEeecCCCCcccccch-hhcccccceeccCCCCCCCC--CC-CCCCCCCCcEEecCCCCC
Q 041551 494 HLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTK--LP-DLSRAKNLEILWLRGCLS 568 (808)
Q Consensus 494 ~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~--~p-~~~~l~~L~~L~L~~n~~ 568 (808)
.++.+++.++.+ ...+++|++|+|++|.+..+|.. +.++++|++|+|++|.+... .| .+..+++|++|+|++| .
T Consensus 11 ~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-G 89 (306)
T ss_dssp EEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-S
T ss_pred EEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-c
Confidence 466777777777 33457899999999999998876 78999999999999975432 13 3667899999999998 4
Q ss_pred CccccccccCCCCcCEEecCCCCCCCcCCC--cC-CCCCCCEEeccCCCCCCcccccccc--cccEEEecccCCee--cC
Q 041551 569 LVETHSTIQYLNKLEDLDLDYCISLTSLPT--SI-HSKHLKELSLRGCSNLKIFPEITSC--HMWRLELTKVGIKE--LP 641 (808)
Q Consensus 569 l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~--~~-~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~~--lp 641 (808)
+..+|..+..+++|++|++++| .++.++. .+ .+++|++|++++|......|..+.. .|+.|++++|.+.. +|
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 168 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence 5578888899999999999995 4666654 33 7899999999998655555554443 39999999999875 78
Q ss_pred cccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccC
Q 041551 642 SSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCG 721 (808)
Q Consensus 642 ~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~ 721 (808)
..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|. +..++..+.. ....+..+.+.+|.+....+..+..
T Consensus 169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYK--CLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGT--TCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhcc--CcccCCEeECCCCCCcccCHHHHHh
Confidence 889999999999999998866667788899999999999985 4444432211 1224566888899988888888888
Q ss_pred C-Ccccccccccccccce
Q 041551 722 L-KHKSQRNLDRRSLGRI 738 (808)
Q Consensus 722 l-~~l~~~~l~~n~~~~~ 738 (808)
+ +++..+++++|.+...
T Consensus 246 ~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCTTCCEEECTTCCEECS
T ss_pred hhccCCEEEccCCCeecc
Confidence 7 4899999999887543
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=9.2e-19 Score=189.97 Aligned_cols=238 Identities=16% Similarity=0.122 Sum_probs=133.6
Q ss_pred EEecCCCCCCc-ccCcccceEeecCCCCcccccc-hhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCcc
Q 041551 495 LEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWD-DVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVE 571 (808)
Q Consensus 495 L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~ 571 (808)
.+.+++.++.+ ....++|++|++++|.++.++. .+.++++|++|+|++|.+....|. +.++++|++|+|++|.. ..
T Consensus 36 c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~ 114 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL-SN 114 (353)
T ss_dssp EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-SS
T ss_pred eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC-Cc
Confidence 45555555555 2233466666666666666655 466666666666666654444443 66666666666666633 33
Q ss_pred cccc-ccCCCCcCEEecCCCCCCCcCCC--cC-CCCCCCEEeccCCCCCCccc-cccccc--ccEEEecccCCeec-Ccc
Q 041551 572 THST-IQYLNKLEDLDLDYCISLTSLPT--SI-HSKHLKELSLRGCSNLKIFP-EITSCH--MWRLELTKVGIKEL-PSS 643 (808)
Q Consensus 572 ~p~~-~~~l~~L~~L~l~~~~~l~~lp~--~~-~l~~L~~L~L~~~~~l~~~p-~~~~~~--L~~L~L~~n~i~~l-p~~ 643 (808)
+|.. +.++++|++|++++| .++.+|. .+ .+++|++|++++|..++.++ ..+... |+.|++++|.++.+ |..
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred CCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence 4433 666666666666664 4555655 23 56666666666664444443 222222 66666666666654 555
Q ss_pred cccCCcCcEEEeecCCCccccccc-ccCCCCCCEEEeecCCCCccccCC-----------------------------CC
Q 041551 644 IECLSNLQYLYIWDCSELESISSS-IFKLNSLESIDISNCSNLKRFLEI-----------------------------PS 693 (808)
Q Consensus 644 ~~~l~~L~~L~L~~n~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~-----------------------------~~ 693 (808)
++.+++|+.|++++|.+ +.+|.. +..+++|+.|++++|. +..++.. |.
T Consensus 194 l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~ 271 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271 (353)
T ss_dssp TTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHH
T ss_pred HhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHH
Confidence 66666666666666665 444443 3346666666666653 2222110 00
Q ss_pred CcCCCCceeeecCCCCCCCCcccccccCCCccccccccccccc
Q 041551 694 CNIDGGFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLG 736 (808)
Q Consensus 694 ~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~ 736 (808)
.+-....+..+.+.+|.+.......|..++++..+++++|.+.
T Consensus 272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 0001112344666677666554455677777777777777654
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=2.9e-18 Score=199.48 Aligned_cols=238 Identities=12% Similarity=0.089 Sum_probs=172.5
Q ss_pred CCC-CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCCC-CCCCCCC
Q 041551 486 GVP-FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLPD-LSRAKNL 558 (808)
Q Consensus 486 ~~~-~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L 558 (808)
.+. +++|++|++++|.+..+ +..+++|++|+|++|.+..+|+. +.++++|++|+|++|.+....|. ++++++|
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 173 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence 344 88999999999999887 45789999999999999999887 69999999999999988777775 9999999
Q ss_pred cEEecCCCCCCccccccccCCCCcCEEecCCCC------------------CCCcCCCcCCCCCCCEEeccCCCCCCccc
Q 041551 559 EILWLRGCLSLVETHSTIQYLNKLEDLDLDYCI------------------SLTSLPTSIHSKHLKELSLRGCSNLKIFP 620 (808)
Q Consensus 559 ~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~------------------~l~~lp~~~~l~~L~~L~L~~~~~l~~~p 620 (808)
++|+|++|... .++ ++.+++|+.|++++|. .+..+|... .++|+.|+|++|... ..+
T Consensus 174 ~~L~L~~N~l~-~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~l~-~~~ 248 (597)
T 3oja_B 174 QNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLT-DTA 248 (597)
T ss_dssp CEEECTTSCCS-BCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSCCC-CCG
T ss_pred cEEECcCCCCC-CcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCccccccccc-CCCCCEEECCCCCCC-CCh
Confidence 99999999544 333 3444555555554432 233333322 357888888888543 333
Q ss_pred ccccc-cccEEEecccCCeec-CcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCC
Q 041551 621 EITSC-HMWRLELTKVGIKEL-PSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDG 698 (808)
Q Consensus 621 ~~~~~-~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~ 698 (808)
..... .|+.|+|++|.++.+ |..++.+++|+.|+|++|.+ ..+|..+..+++|+.|+|++|. +..+|.... ..
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~---~l 323 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNH-LLHVERNQP---QF 323 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC-CEEECSSSCCTTCCEEECCSSC-CCCCGGGHH---HH
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC-CCCCcccccCCCCcEEECCCCC-CCccCcccc---cC
Confidence 33222 288899999888865 67788888999999988876 5577777778889999998875 444543221 11
Q ss_pred CceeeecCCCCCCCCcccccccCCCccccccccccccc
Q 041551 699 GFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLG 736 (808)
Q Consensus 699 ~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~ 736 (808)
..+..+.+.+|.+.... +..++.+..+++++|.+.
T Consensus 324 ~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 324 DRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp TTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred CCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCC
Confidence 23455777778776542 556677778888887754
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=5.7e-18 Score=205.02 Aligned_cols=248 Identities=17% Similarity=0.088 Sum_probs=179.1
Q ss_pred CCceeEEEecCCCC-CCc----ccCcccceEeecCCCCcccc-cchhhcccccceeccCCCCCCCCCCC---CCCCCCCc
Q 041551 489 FAEVRHLEWARCPL-KTL----NICAEKLVSLKMPRSKVQQL-WDDVQDLVNLKEIDLSRSESLTKLPD---LSRAKNLE 559 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l-~~l----~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~~~~~~p~---~~~l~~L~ 559 (808)
+++|++|++++|.. ..+ +..+++|++|+|++|.+..+ |..+.++++|++|+|++|.+...+|. +.++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 78888888888843 222 56778899999999998876 66788999999999999987765553 88899999
Q ss_pred EEecCCCCCCcccc-ccccCCCCcCEEecCCCCCCCcCCCcC---------------------------CCC------CC
Q 041551 560 ILWLRGCLSLVETH-STIQYLNKLEDLDLDYCISLTSLPTSI---------------------------HSK------HL 605 (808)
Q Consensus 560 ~L~L~~n~~l~~~p-~~~~~l~~L~~L~l~~~~~l~~lp~~~---------------------------~l~------~L 605 (808)
+|+|++|......+ ..++++++|++|+|++|......|..+ .++ +|
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 99999986555433 568899999999998865332222211 111 26
Q ss_pred CEEeccCCCCCCcccccc----------------------------------------cccccEEEecccCCeec-Cccc
Q 041551 606 KELSLRGCSNLKIFPEIT----------------------------------------SCHMWRLELTKVGIKEL-PSSI 644 (808)
Q Consensus 606 ~~L~L~~~~~l~~~p~~~----------------------------------------~~~L~~L~L~~n~i~~l-p~~~ 644 (808)
+.|++++|......|... ...|+.|+|++|.+..+ |..+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 777777763222211100 12388899999998876 5568
Q ss_pred ccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCCCc
Q 041551 645 ECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLKH 724 (808)
Q Consensus 645 ~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~ 724 (808)
..+++|+.|+|++|.+.+..|..+..+++|++|++++|. +..++. ..+.....+..+.+.+|.+....+..|..+++
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYS--SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCS--CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCH--HHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 899999999999999876777789999999999999985 333321 11112224566888889888888888999999
Q ss_pred cccccccccccccee
Q 041551 725 KSQRNLDRRSLGRIS 739 (808)
Q Consensus 725 l~~~~l~~n~~~~~~ 739 (808)
+..+++++|.+..+.
T Consensus 364 L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 364 LQTLDLRDNALTTIH 378 (844)
T ss_dssp CCEEEEETCCSCCCS
T ss_pred CCEEECCCCCCCccc
Confidence 999999998877544
No 44
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=198.72 Aligned_cols=99 Identities=19% Similarity=0.123 Sum_probs=62.3
Q ss_pred CceeEEEecCCCCCCc----ccCcccceEeecCCCCcccc-cchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecC
Q 041551 490 AEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQL-WDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLR 564 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~ 564 (808)
++|++|++++|.+..+ +..+++|++|+|++|.++.+ |..+.++++|++|+|++|.+. .+|.. .+++|++|+|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH-PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC-CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc-ccCCccEEecc
Confidence 5667777777766655 34566677777777776655 445666677777777766543 45544 66667777776
Q ss_pred CCCCCc-cccccccCCCCcCEEecCCC
Q 041551 565 GCLSLV-ETHSTIQYLNKLEDLDLDYC 590 (808)
Q Consensus 565 ~n~~l~-~~p~~~~~l~~L~~L~l~~~ 590 (808)
+|.... .+|..++++++|++|++++|
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred CCccccccchhhhccCCcceEEEecCc
Confidence 664443 34566666666666666664
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=1.1e-18 Score=189.30 Aligned_cols=223 Identities=16% Similarity=0.106 Sum_probs=158.1
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccc-hhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWD-DVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
+++|++|++++|.+..+ +..+++|++|++++|.++.+++ .+.++++|++|+|++|.+....+. +.++++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 35788888888887766 4567788888888888887754 478888888888888865543334 77888888888
Q ss_pred cCCCCCCccccc--cccCCCCcCEEecCCCCCCCcCCC-cC-CCCCCCEEeccCCCCCCccccccccc--ccEEEecccC
Q 041551 563 LRGCLSLVETHS--TIQYLNKLEDLDLDYCISLTSLPT-SI-HSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVG 636 (808)
Q Consensus 563 L~~n~~l~~~p~--~~~~l~~L~~L~l~~~~~l~~lp~-~~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~ 636 (808)
+++|. +..+|. .+.++++|++|++++|+.++.++. .+ ++++|++|++++|......|..+... |+.|++++|.
T Consensus 131 L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 131 LLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 88874 445655 577888888888888766666654 33 67888888888886554445554443 7788888888
Q ss_pred CeecCcc-cccCCcCcEEEeecCCCcc-------------------------------cccccccCCCCCCEEEeecCCC
Q 041551 637 IKELPSS-IECLSNLQYLYIWDCSELE-------------------------------SISSSIFKLNSLESIDISNCSN 684 (808)
Q Consensus 637 i~~lp~~-~~~l~~L~~L~L~~n~~l~-------------------------------~lp~~~~~l~~L~~L~l~~c~~ 684 (808)
+..+|.. +..+++|+.|++++|.+.+ .+|..+..+++|+.|++++|.
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~- 288 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ- 288 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-
Confidence 7777665 3457778888887777643 256667889999999999984
Q ss_pred CccccCCCCCcCC-CCceeeecCCCCCCCCccc
Q 041551 685 LKRFLEIPSCNID-GGFAFCIVVPHCWEPCETH 716 (808)
Q Consensus 685 l~~lp~~~~~~~~-~~~~~~l~l~~~~~~~~~~ 716 (808)
+..+|.. .+. ...+..+.+.+|.+.|..+
T Consensus 289 l~~i~~~---~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 289 LKSVPDG---IFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCTT---TTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccCHH---HHhcCCCCCEEEeeCCCccCcCC
Confidence 5555543 221 2245678899998887554
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=4.4e-18 Score=194.86 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=52.5
Q ss_pred ccEEEecccCCee-cCcccccCCcCcEEEeecCCCcc--cccccccCCCCCCEEEeecCCCCccccCCCCCcCC------
Q 041551 627 MWRLELTKVGIKE-LPSSIECLSNLQYLYIWDCSELE--SISSSIFKLNSLESIDISNCSNLKRFLEIPSCNID------ 697 (808)
Q Consensus 627 L~~L~L~~n~i~~-lp~~~~~l~~L~~L~L~~n~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~------ 697 (808)
|+.|++++|.++. +|..++.+++|+.|++++|.+.+ .+|..+..+++|++|++++|.....+|......+.
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 5555555555553 44455555555555555555432 33444555555555555554422223321000000
Q ss_pred --------------CCceeeecCCCCCCCCcccccccCCCccccccccccccccee
Q 041551 698 --------------GGFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLGRIS 739 (808)
Q Consensus 698 --------------~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~~~~ 739 (808)
...+..+.+.+|.+. ..|..+..++++..+++++|.+..++
T Consensus 406 Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 406 MSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp CCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred CcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccC
Confidence 012334555566555 23333336666666666666655443
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=1.2e-17 Score=183.75 Aligned_cols=236 Identities=12% Similarity=0.072 Sum_probs=178.9
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
+++|++|++++|.+..+ +..+++|++|++++|.+..+|.. +.++++|++|+|++|.+....|. +.++++|++|+
T Consensus 92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence 78999999999998877 45788999999999999999887 58999999999999987766665 89999999999
Q ss_pred cCCCCCCccccccccCCCCcCEEecCCC------------------CCCCcCCCcCCCCCCCEEeccCCCCCCccccccc
Q 041551 563 LRGCLSLVETHSTIQYLNKLEDLDLDYC------------------ISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITS 624 (808)
Q Consensus 563 L~~n~~l~~~p~~~~~l~~L~~L~l~~~------------------~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~ 624 (808)
+++|... .++ +..+++|+.|++++| +.+..+|.. ..++|+.|++++|.. ...+....
T Consensus 172 l~~n~l~-~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l-~~~~~l~~ 246 (390)
T 3o6n_A 172 LSSNRLT-HVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNL-TDTAWLLN 246 (390)
T ss_dssp CCSSCCS-BCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSCC-CCCGGGGG
T ss_pred CCCCcCC-ccc--cccccccceeecccccccccCCCCcceEEECCCCeeeecccc-ccccccEEECCCCCC-cccHHHcC
Confidence 9998543 332 344455555444443 223344332 246899999999954 44443333
Q ss_pred c-cccEEEecccCCeec-CcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCcee
Q 041551 625 C-HMWRLELTKVGIKEL-PSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAF 702 (808)
Q Consensus 625 ~-~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~ 702 (808)
. .|+.|+|++|.++.+ |..+..+++|+.|+|++|.+ ..+|..+..+++|+.|++++|. +..+|.... ....+.
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---~l~~L~ 321 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNH-LLHVERNQP---QFDRLE 321 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC-CEEECSSSCCTTCCEEECCSSC-CCCCGGGHH---HHTTCS
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC-cccCcccCCCCCCCEEECCCCc-ceecCcccc---ccCcCC
Confidence 2 399999999999976 77899999999999999987 6678778889999999999985 555554321 112355
Q ss_pred eecCCCCCCCCcccccccCCCcccccccccccccc
Q 041551 703 CIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLGR 737 (808)
Q Consensus 703 ~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~~ 737 (808)
.+.+.+|.+.... +..++.+..+++++|.+..
T Consensus 322 ~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 322 NLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred EEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence 6788888887542 6677888999999998764
No 48
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=5.6e-18 Score=177.01 Aligned_cols=195 Identities=19% Similarity=0.147 Sum_probs=141.0
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccc-hhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWD-DVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
+++|++|++++|.+..+ +..+.+|++|++++|.+..++. .+.++++|++|+|++|.+....|. +.++++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 45788888888887766 4457788888888888887765 478888888888888876555554 88888888888
Q ss_pred cCCCCCCccccccccCCCCcCEEecCCCCCCCc--CCCcC-CCCCCCEEeccCCCCCCccccccccc--cc----EEEec
Q 041551 563 LRGCLSLVETHSTIQYLNKLEDLDLDYCISLTS--LPTSI-HSKHLKELSLRGCSNLKIFPEITSCH--MW----RLELT 633 (808)
Q Consensus 563 L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~--lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L~----~L~L~ 633 (808)
+++|......+..+..+++|++|++++|. ++. +|..+ .+++|++|++++|......+..+... |+ .|+++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence 88885544444468888888888888854 444 56655 67888888888885433333333222 33 78888
Q ss_pred ccCCeecCcccccCCcCcEEEeecCCCcccccc-cccCCCCCCEEEeecCCCC
Q 041551 634 KVGIKELPSSIECLSNLQYLYIWDCSELESISS-SIFKLNSLESIDISNCSNL 685 (808)
Q Consensus 634 ~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~-~~~~l~~L~~L~l~~c~~l 685 (808)
+|.++.+|.......+|+.|+|++|.+ +.+|. .+..+++|+.|++++|+.-
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 186 LNPMNFIQPGAFKEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SSCCCEECTTSSCSCCEEEEECCSSCC-SCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCcccccCccccCCCcccEEECCCCce-eecCHhHhcccccccEEEccCCccc
Confidence 888888877766666888888888876 44444 4677888888888877543
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=4.3e-18 Score=196.84 Aligned_cols=101 Identities=17% Similarity=0.105 Sum_probs=73.6
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccc-cchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEec
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQL-WDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWL 563 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L 563 (808)
+++|+.|++++|.+..+ +..+++|++|+|++|.++.+ |..+.++++|++|+|++|.+. .+|.. .+++|++|+|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~L 128 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC-PMASLRHLDL 128 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC-CCTTCSEEEC
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc-ccccCCEEEC
Confidence 46788888888887766 45677788888888888877 445778888888888888643 56654 7788888888
Q ss_pred CCCCCCc-cccccccCCCCcCEEecCCCC
Q 041551 564 RGCLSLV-ETHSTIQYLNKLEDLDLDYCI 591 (808)
Q Consensus 564 ~~n~~l~-~~p~~~~~l~~L~~L~l~~~~ 591 (808)
++|.... .+|..++++++|++|++++|.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred CCCCccccCchHhhcccCcccEEecCCCc
Confidence 8875443 234677888888888888754
No 50
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.3e-17 Score=173.60 Aligned_cols=191 Identities=20% Similarity=0.232 Sum_probs=140.5
Q ss_pred ceeEEEecCCCCCCc-ccCcccceEeecCCCCcccccc-hhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCC
Q 041551 491 EVRHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWD-DVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCL 567 (808)
Q Consensus 491 ~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~ 567 (808)
.++.++++++.++.+ ...+.+|+.|+|++|.+..++. .+.++++|++|+|++|.+....+. +.++++|++|+|++|.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 456788888888877 3345678889999998888875 588888999999988875543334 6788899999998885
Q ss_pred CCccccccccCCCCcCEEecCCCCCCCcCCCc-C-CCCCCCEEeccCCCCCCccccc-ccc--cccEEEecccCCeecCc
Q 041551 568 SLVETHSTIQYLNKLEDLDLDYCISLTSLPTS-I-HSKHLKELSLRGCSNLKIFPEI-TSC--HMWRLELTKVGIKELPS 642 (808)
Q Consensus 568 ~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~p~~-~~~--~L~~L~L~~n~i~~lp~ 642 (808)
.....+..+..+++|++|++++| .++.+|.. + .+++|++|+|++|. +..+|.. +.. .|+.|+|++|.++.+|.
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 44433445688889999999885 46666553 3 77888888888884 4444432 322 38888888888888765
Q ss_pred c-cccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCC
Q 041551 643 S-IECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCS 683 (808)
Q Consensus 643 ~-~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~ 683 (808)
. +..+++|+.|+|++|.+.+..+..+..+++|+.|++++|+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 4 7788888888888887743333347778888888888876
No 51
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.4e-17 Score=175.11 Aligned_cols=191 Identities=23% Similarity=0.234 Sum_probs=149.6
Q ss_pred CCceeEEEecCCCCCCc-ccCcccceEeecCCCCccccc-chhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCC
Q 041551 489 FAEVRHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLW-DDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGC 566 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n 566 (808)
.++++.+++.++.++.+ ...+++++.|+|++|.+..++ ..+..+++|++|+|++|.+ ..++..+.+++|++|+|++|
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHN 87 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCEEECCSS
T ss_pred cCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCCCCCCcCCEEECCCC
Confidence 56788899999888888 445678999999999998775 4588899999999999864 44555578899999999988
Q ss_pred CCCccccccccCCCCcCEEecCCCCCCCcCCCc-C-CCCCCCEEeccCCCCCCcccc-cccc--cccEEEecccCCeecC
Q 041551 567 LSLVETHSTIQYLNKLEDLDLDYCISLTSLPTS-I-HSKHLKELSLRGCSNLKIFPE-ITSC--HMWRLELTKVGIKELP 641 (808)
Q Consensus 567 ~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~p~-~~~~--~L~~L~L~~n~i~~lp 641 (808)
.+..+|..+..+++|++|++++| .++.+|.. + ++++|++|+|++|... .+|. .+.. .|+.|+|++|.|+.+|
T Consensus 88 -~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 88 -QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp -CCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred -cCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCCccC
Confidence 55678888888999999999985 56777653 4 7889999999988544 4443 3332 3888888888888887
Q ss_pred cc-cccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCC
Q 041551 642 SS-IECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSN 684 (808)
Q Consensus 642 ~~-~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~ 684 (808)
.. +..+++|+.|+|++|.+ ..+|..+..+++|+.|++++|+.
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l-~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCCCSEEECCSCCB
T ss_pred HHHhcCcCCCCEEECCCCcC-CccChhhcccccCCeEEeCCCCc
Confidence 65 57788888888888876 67888888888888888888764
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.76 E-value=4.7e-18 Score=198.50 Aligned_cols=244 Identities=16% Similarity=0.095 Sum_probs=139.4
Q ss_pred CCceeEEEecCCCCCCc--ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCC
Q 041551 489 FAEVRHLEWARCPLKTL--NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGC 566 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n 566 (808)
+++|+.|++.++.+..+ ...+.+|+.|++++|.+..+| .+ .+++|+.|++++|...... .+..+++|++|++++|
T Consensus 284 l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRN 360 (606)
T ss_dssp GTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSS
T ss_pred CCCCCEEEecCccchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCC
Confidence 56666777777666655 344556677777777766666 34 6666777777666444333 3556666666666666
Q ss_pred CCCcc--ccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccc-ccccc--cccEEEecccCCee-
Q 041551 567 LSLVE--THSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFP-EITSC--HMWRLELTKVGIKE- 639 (808)
Q Consensus 567 ~~l~~--~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p-~~~~~--~L~~L~L~~n~i~~- 639 (808)
..... +|..+..+++|++|++++|. +..+|..+ .+++|+.|++++|......| ..+.. .|+.|++++|.+..
T Consensus 361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 361 ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439 (606)
T ss_dssp CEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred ccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence 43322 25556666666666666643 55555444 55666666666664433333 12222 26666666666664
Q ss_pred cCcccccCCcCcEEEeecCCCcc-cccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCccccc
Q 041551 640 LPSSIECLSNLQYLYIWDCSELE-SISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEV 718 (808)
Q Consensus 640 lp~~~~~l~~L~~L~L~~n~~l~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 718 (808)
.|..++.+++|+.|++++|.+.+ .+|..+..+++|+.|++++|......|..... ...+..+.+.+|.+....+..
T Consensus 440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT---LHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT---CTTCCEEECCSSCCSCEEGGG
T ss_pred chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc---cccCCEEECCCCcCCCcCHHH
Confidence 34556666666666666666544 25555666666666666666432222221111 123344566666666655666
Q ss_pred ccCCCccccccccccccccee
Q 041551 719 FCGLKHKSQRNLDRRSLGRIS 739 (808)
Q Consensus 719 f~~l~~l~~~~l~~n~~~~~~ 739 (808)
|+.++++..+++++|.+..++
T Consensus 517 ~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp TTTCTTCCEEECTTSCCCCEE
T ss_pred ccCCCcCCEEECCCCcCcccC
Confidence 666666666666666655444
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.76 E-value=1.6e-18 Score=199.88 Aligned_cols=126 Identities=18% Similarity=0.217 Sum_probs=67.9
Q ss_pred CceeEEEecCCCCCCc----ccCcccceEeecCCCCccccc-chhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEec
Q 041551 490 AEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLW-DDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWL 563 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L 563 (808)
++|++|++++|.+..+ +..+++|++|++++|.+..++ ..+.++++|++|+|++|.+....|. ++++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 4566666666655544 344555666666666665554 2355566666666666654444443 555666666666
Q ss_pred CCCCCCc-cccccccCCCCcCEEecCCCCCCCcCCC-cC-CCCCCCEEeccCCCC
Q 041551 564 RGCLSLV-ETHSTIQYLNKLEDLDLDYCISLTSLPT-SI-HSKHLKELSLRGCSN 615 (808)
Q Consensus 564 ~~n~~l~-~~p~~~~~l~~L~~L~l~~~~~l~~lp~-~~-~l~~L~~L~L~~~~~ 615 (808)
++|.... ..|..++++++|++|++++|..++.+|. .+ ++++|++|++++|..
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 6653332 2344555566666666665544555543 22 455555555555543
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.75 E-value=2.2e-17 Score=192.88 Aligned_cols=128 Identities=18% Similarity=0.138 Sum_probs=86.4
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCccccc-chhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLW-DDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
++++++|++++|.+..+ +..+++|++|+|++|.++.++ ..|.++++|++|+|++|.+....|. |+++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 36777777777777665 446677777777777777664 3477777777777777765555564 77777777777
Q ss_pred cCCCCCCccccccccCCCCcCEEecCCCCCCC-cCCCcC-CCCCCCEEeccCCCCC
Q 041551 563 LRGCLSLVETHSTIQYLNKLEDLDLDYCISLT-SLPTSI-HSKHLKELSLRGCSNL 616 (808)
Q Consensus 563 L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~-~lp~~~-~l~~L~~L~L~~~~~l 616 (808)
|++|......|..++++++|++|++++|.... .+|..+ ++++|++|++++|...
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 77775444444567777777777777754332 456655 6777777777777433
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.75 E-value=2.6e-17 Score=194.96 Aligned_cols=245 Identities=17% Similarity=0.089 Sum_probs=131.0
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
.++|++|++++|.+..+ +..+++|++|+|++|.+..+|+. +.++++|++|+|++|.+....|. ++++++|++|+
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 45666666666665554 23456666666666666666653 66666666666666654443333 66666666666
Q ss_pred cCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCc----CCCCCCCEEeccCCCCCCccccccc--------------
Q 041551 563 LRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTS----IHSKHLKELSLRGCSNLKIFPEITS-------------- 624 (808)
Q Consensus 563 L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~----~~l~~L~~L~L~~~~~l~~~p~~~~-------------- 624 (808)
+++|......|..++++++|++|++++|. ++.++.. ..+++|+.|++++|......|..+.
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence 66665554455556666666666666643 4444332 1346666777766643222221110
Q ss_pred ---------------ccccEEEecccCCeec-CcccccCCc--CcEEEeecCCCcccccccccCCCCCCEEEeecCCCCc
Q 041551 625 ---------------CHMWRLELTKVGIKEL-PSSIECLSN--LQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLK 686 (808)
Q Consensus 625 ---------------~~L~~L~L~~n~i~~l-p~~~~~l~~--L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 686 (808)
..|+.|++++|.++.+ |..+.+++. |+.|+|++|.+.+..|..+..+++|++|++++|....
T Consensus 207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence 1133344444443332 223333332 5555555555433334445555555555555543221
Q ss_pred -----------------------------cccCCCCCcC-CCCceeeecCCCCCCCCcccccccCCCccccccccccc
Q 041551 687 -----------------------------RFLEIPSCNI-DGGFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRS 734 (808)
Q Consensus 687 -----------------------------~lp~~~~~~~-~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~ 734 (808)
.+|.+....+ ....+..+.+.+|.+....+..|..++++..+++++|.
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence 1222111111 11234456778888887777788888888888887765
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.75 E-value=4.3e-17 Score=188.17 Aligned_cols=221 Identities=21% Similarity=0.241 Sum_probs=136.1
Q ss_pred CceeEEEecCCCCCCcccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCC
Q 041551 490 AEVRHLEWARCPLKTLNICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSL 569 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l 569 (808)
++|+.|++++|.++.+...+++|++|+|++|.++.+|. .+++|++|+|++|.+ ..+|. .+++|+.|++++|. +
T Consensus 61 ~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l-~~l~~--~l~~L~~L~L~~N~-l 133 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPL-THLPA--LPSGLCKLWIFGNQ-L 133 (622)
T ss_dssp TTCSEEEECSCCCSCCCCCCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCC-CCCCC--CCTTCCEEECCSSC-C
T ss_pred CCCcEEEecCCCCCCCCCcCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcC-CCCCC--CCCCcCEEECCCCC-C
Confidence 55666666666666554455666666666666666554 455666666666543 23333 34555555555552 3
Q ss_pred ccccccccCCCCcCEEecCCCCCCCcCCCc------------------CCCCCCCEEeccCCCCCCcccccccccccEEE
Q 041551 570 VETHSTIQYLNKLEDLDLDYCISLTSLPTS------------------IHSKHLKELSLRGCSNLKIFPEITSCHMWRLE 631 (808)
Q Consensus 570 ~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~------------------~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~ 631 (808)
..+|.. +++|++|++++| .++.+|.. ..+++|+.|++++|. +..+|... ..|+.|+
T Consensus 134 ~~lp~~---l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-l~~l~~~~-~~L~~L~ 207 (622)
T 3g06_A 134 TSLPVL---PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ-LASLPTLP-SELYKLW 207 (622)
T ss_dssp SCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCCCCC-TTCCEEE
T ss_pred CcCCCC---CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC-CCCCCCcc-chhhEEE
Confidence 334432 245555555553 33333321 223666777777663 44455432 3477777
Q ss_pred ecccCCeecCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCC
Q 041551 632 LTKVGIKELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWE 711 (808)
Q Consensus 632 L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~ 711 (808)
+++|.++.+|.. +++|+.|+|++|.+ +.+| ..+++|+.|++++| .+..+|..+. .+..+.+.+|.+
T Consensus 208 L~~N~l~~l~~~---~~~L~~L~Ls~N~L-~~lp---~~l~~L~~L~Ls~N-~L~~lp~~~~------~L~~L~Ls~N~L 273 (622)
T 3g06_A 208 AYNNRLTSLPAL---PSGLKELIVSGNRL-TSLP---VLPSELKELMVSGN-RLTSLPMLPS------GLLSLSVYRNQL 273 (622)
T ss_dssp CCSSCCSSCCCC---CTTCCEEECCSSCC-SCCC---CCCTTCCEEECCSS-CCSCCCCCCT------TCCEEECCSSCC
T ss_pred CcCCcccccCCC---CCCCCEEEccCCcc-CcCC---CCCCcCcEEECCCC-CCCcCCcccc------cCcEEeCCCCCC
Confidence 777777777653 47788888888876 5577 45688999999987 4666666322 345678888888
Q ss_pred CCcccccccCCCcccccccccccccce
Q 041551 712 PCETHEVFCGLKHKSQRNLDRRSLGRI 738 (808)
Q Consensus 712 ~~~~~~~f~~l~~l~~~~l~~n~~~~~ 738 (808)
. ..|..+..++++..+++++|.+...
T Consensus 274 ~-~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 274 T-RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp C-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred C-cCCHHHhhccccCEEEecCCCCCCc
Confidence 8 4566788999999999999987643
No 57
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.74 E-value=2.4e-17 Score=190.46 Aligned_cols=83 Identities=14% Similarity=-0.002 Sum_probs=49.3
Q ss_pred CCCCCEEeccCCCCCCccccccccc--ccEEEecccCCeecC---cccccCCcCcEEEeecCCCccccccc-ccCCCCCC
Q 041551 602 SKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIKELP---SSIECLSNLQYLYIWDCSELESISSS-IFKLNSLE 675 (808)
Q Consensus 602 l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~~lp---~~~~~l~~L~~L~L~~n~~l~~lp~~-~~~l~~L~ 675 (808)
+++|++|++++|......|..+... |+.|+|++|.++.+| ..++++++|+.|++++|.+.+.+|.. +..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 4566666666665544445444332 666777777666543 34666667777777666665445543 55566666
Q ss_pred EEEeecCCC
Q 041551 676 SIDISNCSN 684 (808)
Q Consensus 676 ~L~l~~c~~ 684 (808)
.|++++|..
T Consensus 432 ~L~l~~n~l 440 (562)
T 3a79_B 432 VLNLSSNML 440 (562)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCCC
Confidence 666666653
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.74 E-value=6.5e-17 Score=181.11 Aligned_cols=226 Identities=16% Similarity=0.102 Sum_probs=158.7
Q ss_pred CCceeEEEecCCCCCCc-ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCC
Q 041551 489 FAEVRHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCL 567 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~ 567 (808)
+++|++|++++|.+..+ ...+++|++|++++|.++.++ ++++++|++|++++|.+.. +| ++.+++|++|++++|.
T Consensus 63 l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~ 138 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNT 138 (457)
T ss_dssp CTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSC
T ss_pred cCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCc
Confidence 67788888888877777 566777888888888887774 7778888888888886443 44 7778888888888874
Q ss_pred CCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCcccccC
Q 041551 568 SLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSSIECL 647 (808)
Q Consensus 568 ~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l 647 (808)
.. .++ ++.+++|++|++++|..++.++ ...+++|++|++++|. ++.+|-.....|+.|++++|.++.++ ++.+
T Consensus 139 l~-~l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l 211 (457)
T 3bz5_A 139 LT-EID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTNNITKLD--LNQN 211 (457)
T ss_dssp CS-CCC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECCSSCCSCCC--CTTC
T ss_pred cc-eec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCc-cceeccccCCCCCEEECcCCcCCeec--cccC
Confidence 33 343 7778888888888876676663 2367888888888874 45566222233888888888888774 7888
Q ss_pred CcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCC--------CceeeecCCCCCCCCcccccc
Q 041551 648 SNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDG--------GFAFCIVVPHCWEPCETHEVF 719 (808)
Q Consensus 648 ~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~--------~~~~~l~l~~~~~~~~~~~~f 719 (808)
++|+.|++++|.+. .+| +..+++|+.|++++|. +..+|. ..+.. ..+..+.+.+|......+ +
T Consensus 212 ~~L~~L~Ls~N~l~-~ip--~~~l~~L~~L~l~~N~-l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~ 282 (457)
T 3bz5_A 212 IQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNP-LTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--A 282 (457)
T ss_dssp TTCSEEECCSSCCS-CCC--CTTCTTCSEEECCSSC-CSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--C
T ss_pred CCCCEEECcCCccc-ccC--ccccCCCCEEEeeCCc-CCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc--c
Confidence 88888898888874 466 7788889999998874 444441 11111 122345666665544444 4
Q ss_pred cCCCccccccccccc
Q 041551 720 CGLKHKSQRNLDRRS 734 (808)
Q Consensus 720 ~~l~~l~~~~l~~n~ 734 (808)
..++++..+++++|.
T Consensus 283 ~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 283 EGCRKIKELDVTHNT 297 (457)
T ss_dssp TTCTTCCCCCCTTCT
T ss_pred cccccCCEEECCCCc
Confidence 567888889998885
No 59
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.7e-17 Score=176.11 Aligned_cols=186 Identities=16% Similarity=0.254 Sum_probs=159.4
Q ss_pred CCceeEEEecCCCCCCc--ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCC
Q 041551 489 FAEVRHLEWARCPLKTL--NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGC 566 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n 566 (808)
+++|+.|++.+|.+..+ ...+++|++|++++|.+..++. +..+++|++|+|++|. +..+|.+..+++|++|++++|
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTST 117 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTS
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCC
Confidence 67899999999999887 5678999999999999999987 9999999999999997 555677999999999999999
Q ss_pred CCCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccc-cccEEEecccCCeecCcccc
Q 041551 567 LSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSC-HMWRLELTKVGIKELPSSIE 645 (808)
Q Consensus 567 ~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~-~L~~L~L~~n~i~~lp~~~~ 645 (808)
. +..++. +..+++|++|++++| .++.+|....+++|+.|++++|. +..++..... .|+.|++++|.++.+|. +.
T Consensus 118 ~-l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~ 192 (308)
T 1h6u_A 118 Q-ITDVTP-LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKISDISP-LA 192 (308)
T ss_dssp C-CCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GG
T ss_pred C-CCCchh-hcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCccCcChh-hc
Confidence 5 455654 899999999999996 57777775588999999999994 5555553222 39999999999999876 89
Q ss_pred cCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCC
Q 041551 646 CLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCS 683 (808)
Q Consensus 646 ~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~ 683 (808)
.+++|+.|+|++|.+ ..++. +..+++|+.|++++|+
T Consensus 193 ~l~~L~~L~L~~N~l-~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 193 SLPNLIEVHLKNNQI-SDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp GCTTCCEEECTTSCC-CBCGG-GTTCTTCCEEEEEEEE
T ss_pred CCCCCCEEEccCCcc-Ccccc-ccCCCCCCEEEccCCe
Confidence 999999999999987 55554 8899999999999985
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.74 E-value=6e-17 Score=181.45 Aligned_cols=236 Identities=13% Similarity=0.037 Sum_probs=124.2
Q ss_pred CCceeEEEecCCCCCCc-ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCC
Q 041551 489 FAEVRHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCL 567 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~ 567 (808)
+++|++|++++|.+..+ ...+++|++|++++|.++.+| ++.+++|++|++++|.+.. ++ ++.+++|++|++++|.
T Consensus 84 l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~-l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 84 NTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID-VSHNTQLTELDCHLNK 159 (457)
T ss_dssp CTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC-CTTCTTCCEEECTTCS
T ss_pred CCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec-cccCCcCCEEECCCCC
Confidence 44555555555555544 344455555555555555543 4455555555555554332 22 4444445555554443
Q ss_pred CCcc---------------------ccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCccccccccc
Q 041551 568 SLVE---------------------THSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCH 626 (808)
Q Consensus 568 ~l~~---------------------~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~ 626 (808)
.++. +| +..+++|+.|++++| .++.++ ...+++|+.|++++|. +..+|-.....
T Consensus 160 ~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N-~l~~~~-l~~l~~L~~L~Ls~N~-l~~ip~~~l~~ 234 (457)
T 3bz5_A 160 KITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKLD-LNQNIQLTFLDCSSNK-LTEIDVTPLTQ 234 (457)
T ss_dssp CCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCCCTTCTT
T ss_pred cccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCC-cCCeec-cccCCCCCEEECcCCc-ccccCccccCC
Confidence 3333 33 444555555555543 233332 1244555555555553 33344211122
Q ss_pred ccEEEecccCCeecCcc-cccCC-------cCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCC-
Q 041551 627 MWRLELTKVGIKELPSS-IECLS-------NLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNID- 697 (808)
Q Consensus 627 L~~L~L~~n~i~~lp~~-~~~l~-------~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~- 697 (808)
|+.|++++|.++.+|.. +.+|. +|+.|++++|...+.+| ++.+++|+.|++++|+.++.+|.....+..
T Consensus 235 L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L 312 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL 312 (457)
T ss_dssp CSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC
T ss_pred CCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe
Confidence 66666666666655421 22222 33444455555445554 356678888888888877777643222211
Q ss_pred ----CCceeeecCCCCCCCCcccccccCCCcccccccccccccce
Q 041551 698 ----GGFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLGRI 738 (808)
Q Consensus 698 ----~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~~~ 738 (808)
...+..+.+.+|.+.+. .+..++.+..+++++|.+..+
T Consensus 313 ~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 313 DLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC
T ss_pred chhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc
Confidence 12345577888888764 277888888888888887653
No 61
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=3.8e-17 Score=184.19 Aligned_cols=240 Identities=14% Similarity=0.157 Sum_probs=122.2
Q ss_pred CCceeEEEecCCCCCCc--ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCC
Q 041551 489 FAEVRHLEWARCPLKTL--NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGC 566 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n 566 (808)
+++|++|++++|.+..+ ...+++|++|++++|.+..+++ +.++++|++|++++|.+ ..+|.+.++++|++|++++|
T Consensus 67 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQI-TDIDPLKNLTNLNRLELSSN 144 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEEEEEE
T ss_pred hcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCC-CCChHHcCCCCCCEEECCCC
Confidence 45566666666655554 3445555666666665555544 55555566666655542 22333555555555555554
Q ss_pred CCCcccc--------------------ccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCccccccccc
Q 041551 567 LSLVETH--------------------STIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCH 626 (808)
Q Consensus 567 ~~l~~~p--------------------~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~ 626 (808)
.. ..++ ..+.++++|+.|++++|. +..++....+++|++|++++|......|......
T Consensus 145 ~l-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~ 222 (466)
T 1o6v_A 145 TI-SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITPLGILTN 222 (466)
T ss_dssp EE-CCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTT
T ss_pred cc-CCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCcccccccccccCC
Confidence 21 1121 125566667777776643 4555443356666666666664333333111222
Q ss_pred ccEEEecccCCeecCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCC------------
Q 041551 627 MWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSC------------ 694 (808)
Q Consensus 627 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~------------ 694 (808)
|+.|++++|.++.++ .+..+++|+.|++++|.+.+ ++. +..+++|+.|++++|. +..+|.+...
T Consensus 223 L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 223 LDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISN-LAP-LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQ 298 (466)
T ss_dssp CCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC
T ss_pred CCEEECCCCCcccch-hhhcCCCCCEEECCCCcccc-chh-hhcCCCCCEEECCCCc-cCccccccCCCccCeEEcCCCc
Confidence 555556555555543 34555555555555555422 222 4445555555555543 2222211000
Q ss_pred ------cCCCCceeeecCCCCCCCCcccccccCCCcccccccccccccce
Q 041551 695 ------NIDGGFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLGRI 738 (808)
Q Consensus 695 ------~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~~~ 738 (808)
+-....+..+.+.+|.+....+ +..++++..+++++|.+..+
T Consensus 299 l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 299 LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp CSCCGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred ccCchhhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence 0011123445666666665444 56677777777777766554
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=9.1e-19 Score=186.44 Aligned_cols=238 Identities=16% Similarity=0.068 Sum_probs=183.1
Q ss_pred CCceeEEEecCCCCCCc-ccCcccceEeecCCCCccc--ccchhh-------cccccceeccCCCCCCCCCCC-C--CCC
Q 041551 489 FAEVRHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQ--LWDDVQ-------DLVNLKEIDLSRSESLTKLPD-L--SRA 555 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~--l~~~~~-------~l~~L~~L~L~~n~~~~~~p~-~--~~l 555 (808)
.++|+.|++.+|.+ .+ ......|+.|+|++|.+.. +|..+. ++++|++|+|++|.+.+.+|. + ..+
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCCceeEeeccccc-ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 45677778888888 54 2233448999999999864 565554 799999999999998878885 4 899
Q ss_pred CCCcEEecCCCCCCccccccccCC-----CCcCEEecCCCCCCCcCC-CcC-CCCCCCEEeccCCCCCCc--ccccc--c
Q 041551 556 KNLEILWLRGCLSLVETHSTIQYL-----NKLEDLDLDYCISLTSLP-TSI-HSKHLKELSLRGCSNLKI--FPEIT--S 624 (808)
Q Consensus 556 ~~L~~L~L~~n~~l~~~p~~~~~l-----~~L~~L~l~~~~~l~~lp-~~~-~l~~L~~L~L~~~~~l~~--~p~~~--~ 624 (808)
++|++|+|++|.... +|..++.+ ++|++|++++|. ++.+| ..+ .+++|++|++++|...+. +|... .
T Consensus 121 ~~L~~L~Ls~N~l~~-~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 121 PDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CCCSEEEEESCBCSS-SSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCccEEEccCCCCcc-hhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 999999999996554 47777776 999999999965 56665 555 889999999999975543 22222 2
Q ss_pred --ccccEEEecccCCeecCc---c-cccCCcCcEEEeecCCCccccc-ccccCCCCCCEEEeecCCCCccccCCCCCcCC
Q 041551 625 --CHMWRLELTKVGIKELPS---S-IECLSNLQYLYIWDCSELESIS-SSIFKLNSLESIDISNCSNLKRFLEIPSCNID 697 (808)
Q Consensus 625 --~~L~~L~L~~n~i~~lp~---~-~~~l~~L~~L~L~~n~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~ 697 (808)
..|+.|+|++|.++.+|. . +.++++|+.|+|++|.+.+..| ..+..+++|+.|++++|. +..+|. .+.
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~---~~~- 273 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK---GLP- 273 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS---SCC-
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhh---hcc-
Confidence 239999999999995542 3 4678999999999999866564 346678999999999985 455554 332
Q ss_pred CCceeeecCCCCCCCCcccccccCCCcccccccccccccc
Q 041551 698 GGFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLGR 737 (808)
Q Consensus 698 ~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~~ 737 (808)
..+..+.+.+|.+... |. +..++++..+++++|.+..
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 4567789999999876 54 8899999999999998753
No 63
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.74 E-value=3.8e-18 Score=196.83 Aligned_cols=111 Identities=17% Similarity=0.170 Sum_probs=84.1
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccch-hhcccccceeccCCCCCCC-CCC-CCCCCCCCcEE
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLT-KLP-DLSRAKNLEIL 561 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~-~~p-~~~~l~~L~~L 561 (808)
+++|++|++++|.+..+ +..+.+|++|+|++|.+..+++. ++++++|++|+|++|.+.. ..| .++++++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 77888888888887766 45678888888888888877765 8888888888888887654 334 38888888888
Q ss_pred ecCCCCCCcccc-ccccCCCCcCEEecCCCCCCCcCCCc
Q 041551 562 WLRGCLSLVETH-STIQYLNKLEDLDLDYCISLTSLPTS 599 (808)
Q Consensus 562 ~L~~n~~l~~~p-~~~~~l~~L~~L~l~~~~~l~~lp~~ 599 (808)
++++|...+.+| ..+.++++|++|++++|...+..|..
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 888886566665 46788888888888886544444443
No 64
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.73 E-value=5.6e-19 Score=165.87 Aligned_cols=101 Identities=15% Similarity=0.249 Sum_probs=90.5
Q ss_pred CCCCCcccEEecCccccCCCChHHHHHHHHHhC--CcceEeeC-CcCCCCcchHHHHHHHH-hhcceeEEecccccchhh
Q 041551 19 SRNSNKYDVFLSFRGEDTRDNFTSHLYSALWHN--NIETFIDN-DLKRGDEISQSLLDTIE-ASAISIIIFSERYASSGW 94 (808)
Q Consensus 19 ~~~~~~~dvflSy~~~D~~~~f~~~l~~~l~~~--g~~~~~d~-~l~~g~~~~~~i~~ai~-~s~~~v~v~S~~y~~s~~ 94 (808)
....+.|||||||+++| ..|+.+|+.+|+++ |+++|+|+ ++.+|+.+...|.++|+ +|+++|+|+|++|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 34468999999999999 78999999999985 69999999 99999999999999999 799999999999999999
Q ss_pred hHHHHHHHHHhh-hcCCCeEEEEEeeeC
Q 041551 95 CLDELSKIFECK-HDYGQIVIPVFCRVD 121 (808)
Q Consensus 95 c~~el~~~~~~~-~~~~~~v~Pv~~~v~ 121 (808)
|..|+..++++. ..++.+++||+|+.-
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAM 116 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEccc
Confidence 999999999865 233457999999854
No 65
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.73 E-value=3.3e-19 Score=165.75 Aligned_cols=97 Identities=21% Similarity=0.355 Sum_probs=88.2
Q ss_pred CCCcccEEecCccccCCCChHHH-HHHHHHhC--CcceEeeC-CcCCCCcchHHHHHHHHhhcceeEEecccccchhhhH
Q 041551 21 NSNKYDVFLSFRGEDTRDNFTSH-LYSALWHN--NIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCL 96 (808)
Q Consensus 21 ~~~~~dvflSy~~~D~~~~f~~~-l~~~l~~~--g~~~~~d~-~l~~g~~~~~~i~~ai~~s~~~v~v~S~~y~~s~~c~ 96 (808)
+.+.|||||||+++| ..|+.+ |+.+|+++ |+++|+|+ ++.+|+.+.+.|.++|++||+.|+|+|++|+.|.||.
T Consensus 2 ~~~~yDvFiSy~~~D--~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERD--AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCccc--HHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 468999999999999 489997 99999986 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hhhcCCCeEEEEEee
Q 041551 97 DELSKIFE-CKHDYGQIVIPVFCR 119 (808)
Q Consensus 97 ~el~~~~~-~~~~~~~~v~Pv~~~ 119 (808)
.|+..++. +.+.++.+++||+|+
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~ 103 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLE 103 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEec
Confidence 99998775 334456789999987
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=5.1e-18 Score=180.60 Aligned_cols=190 Identities=16% Similarity=0.131 Sum_probs=149.5
Q ss_pred CCceeEEEecCCCCCCc----c--cCcccceEeecCCCCcccccchhhcc-----cccceeccCCCCCCCCCCC-CCCCC
Q 041551 489 FAEVRHLEWARCPLKTL----N--ICAEKLVSLKMPRSKVQQLWDDVQDL-----VNLKEIDLSRSESLTKLPD-LSRAK 556 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~--~~~~~L~~L~L~~n~l~~l~~~~~~l-----~~L~~L~L~~n~~~~~~p~-~~~l~ 556 (808)
+++|++|++++|.+... . ..+++|++|+|++|.+..+|..+..+ ++|++|+|++|.+....|. +++++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 56899999999988753 2 56889999999999999888778877 8999999999987666655 88999
Q ss_pred CCcEEecCCCCCCcc--ccccc--cCCCCcCEEecCCCCCCCcCC---CcC--CCCCCCEEeccCCCCCCccccc-cc--
Q 041551 557 NLEILWLRGCLSLVE--THSTI--QYLNKLEDLDLDYCISLTSLP---TSI--HSKHLKELSLRGCSNLKIFPEI-TS-- 624 (808)
Q Consensus 557 ~L~~L~L~~n~~l~~--~p~~~--~~l~~L~~L~l~~~~~l~~lp---~~~--~l~~L~~L~L~~~~~l~~~p~~-~~-- 624 (808)
+|++|+|++|...+. +|..+ ..+++|++|++++| .++.+| ... .+++|++|++++|......|.. ..
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 999999999875544 34444 88999999999996 455433 222 6689999999998655544322 22
Q ss_pred ccccEEEecccCCeecCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCC
Q 041551 625 CHMWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCS 683 (808)
Q Consensus 625 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~ 683 (808)
..|+.|+|++|.|+.+|..+. ++|+.|+|++|++ +.+|. +..+++|++|++++|+
T Consensus 253 ~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l-~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRL-DRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCC-CSCCC-TTTSCEEEEEECTTCT
T ss_pred CCCCEEECCCCccChhhhhcc--CCceEEECCCCCC-CCChh-HhhCCCCCEEeccCCC
Confidence 248999999999999988876 8999999998887 55576 8889999999999885
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.73 E-value=1.8e-17 Score=172.61 Aligned_cols=173 Identities=18% Similarity=0.206 Sum_probs=88.4
Q ss_pred CCceeEEEecCCCCCCc--ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCC
Q 041551 489 FAEVRHLEWARCPLKTL--NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRG 565 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~ 565 (808)
+++|+.|++.+|.+..+ ...+++|++|++++|.+..++ .+..+++|++|+|++|.+....+. +.++++|++|+|++
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 44555555555555544 334455555555555555442 445555555555555543333333 45555555555555
Q ss_pred CCCCccccccccCCCCcCEEecCCCCCCCcCCCcC--CCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCcc
Q 041551 566 CLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSS 643 (808)
Q Consensus 566 n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~ 643 (808)
|......+..+..+++|++|++++| .++.+|... .+++|++|+++ +|.++.+|..
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~----------------------~n~l~~~~~~ 175 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLS----------------------YNQLQSLPEG 175 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC----------------------SSCCCCCCTT
T ss_pred CcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECC----------------------CCCcCccCHH
Confidence 5333222233455555555555554 334444322 44555555554 4555544433
Q ss_pred -cccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCC
Q 041551 644 -IECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNL 685 (808)
Q Consensus 644 -~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l 685 (808)
++.+++|+.|++++|.+.+..|..+..+++|+.|++++|+..
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 455666666666666654433444556666666666666543
No 68
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.73 E-value=3.7e-17 Score=197.88 Aligned_cols=247 Identities=17% Similarity=0.087 Sum_probs=183.5
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCC-cccc-cchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEE
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSK-VQQL-WDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEIL 561 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~-l~~l-~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L 561 (808)
+++++.|++++|.++.+ +..+++|++|+|++|. +..+ |..+.++++|++|+|++|.+....|. |.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 67899999999998776 6678899999999984 4466 56689999999999999987777675 9999999999
Q ss_pred ecCCCCCCcccccc--ccCCCCcCEEecCCCCCCCcCC-CcC-CCCCCCEEeccCCCCCCccccccc----ccccEEEec
Q 041551 562 WLRGCLSLVETHST--IQYLNKLEDLDLDYCISLTSLP-TSI-HSKHLKELSLRGCSNLKIFPEITS----CHMWRLELT 633 (808)
Q Consensus 562 ~L~~n~~l~~~p~~--~~~l~~L~~L~l~~~~~l~~lp-~~~-~l~~L~~L~L~~~~~l~~~p~~~~----~~L~~L~L~ 633 (808)
+|++|.....+|.. ++++++|++|+|++|...+..| ..+ ++++|++|+|++|......|..+. ..|+.|+|+
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999766656655 8899999999999975433333 234 789999999999876555555443 348899999
Q ss_pred ccCCee-cCcccccCCc------CcEEEeecCCCcccccccccC------------------------------------
Q 041551 634 KVGIKE-LPSSIECLSN------LQYLYIWDCSELESISSSIFK------------------------------------ 670 (808)
Q Consensus 634 ~n~i~~-lp~~~~~l~~------L~~L~L~~n~~l~~lp~~~~~------------------------------------ 670 (808)
+|.+.. .|..++.+++ |+.|++++|.+.+.+|..+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 998874 5666666655 999999998765544433221
Q ss_pred --CCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCCCcccccccccccccce
Q 041551 671 --LNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLGRI 738 (808)
Q Consensus 671 --l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~~~ 738 (808)
.++|+.|++++|......|.... ....+..+.+.+|.+....+..|..++++..+++++|.+..+
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFE---TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSS---SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred cccCCccEEECCCCcccccChhhhh---cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc
Confidence 25788888888753322222211 122345677888888877788899999999999999887655
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=5.7e-17 Score=169.32 Aligned_cols=214 Identities=20% Similarity=0.147 Sum_probs=151.0
Q ss_pred EecCCCCCCc-ccCcccceEeecCCCCcccccc-hhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCccc
Q 041551 496 EWARCPLKTL-NICAEKLVSLKMPRSKVQQLWD-DVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVET 572 (808)
Q Consensus 496 ~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~ 572 (808)
+..+..+..+ ...+.+|++|++++|.++.++. .+.++++|++|+|++|.+....+. +.++++|++|+|++|......
T Consensus 13 ~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp ECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred EecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 3344445555 3345679999999999998876 688999999999999976555554 889999999999998666555
Q ss_pred cccccCCCCcCEEecCCCCCCCcCCC-cC-CCCCCCEEeccCCCCCC-ccccccccc--ccEEEecccCCeecCc-cccc
Q 041551 573 HSTIQYLNKLEDLDLDYCISLTSLPT-SI-HSKHLKELSLRGCSNLK-IFPEITSCH--MWRLELTKVGIKELPS-SIEC 646 (808)
Q Consensus 573 p~~~~~l~~L~~L~l~~~~~l~~lp~-~~-~l~~L~~L~L~~~~~l~-~~p~~~~~~--L~~L~L~~n~i~~lp~-~~~~ 646 (808)
+..+.++++|++|++++| .+..++. .+ .+++|++|++++|.... .+|..+..+ |+.|+|++|.++.+|. .+..
T Consensus 93 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred hhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 577899999999999996 4555655 34 78899999999885443 246555543 8888888888887753 4666
Q ss_pred CCcCc----EEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCC-CCceeeecCCCCCCCCcc
Q 041551 647 LSNLQ----YLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNID-GGFAFCIVVPHCWEPCET 715 (808)
Q Consensus 647 l~~L~----~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~-~~~~~~l~l~~~~~~~~~ 715 (808)
+++|+ .|++++|.+ ..+|.......+|+.|++++|. +..+|. ..+. ...+..+.+.+|.+.|..
T Consensus 172 l~~L~~l~l~L~ls~n~l-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~---~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQ-LKSVPD---GIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp HHTCTTCCEEEECCSSCC-CEECTTSSCSCCEEEEECCSSC-CSCCCT---TTTTTCCSCCEEECCSSCBCCCT
T ss_pred hhhccccceeeecCCCcc-cccCccccCCCcccEEECCCCc-eeecCH---hHhcccccccEEEccCCcccccC
Confidence 66666 788888876 4555545555678888888875 444443 2221 123445677777766543
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=4.5e-18 Score=181.52 Aligned_cols=228 Identities=13% Similarity=0.046 Sum_probs=167.7
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecC
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLR 564 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~ 564 (808)
+++|+.|++++|.+..+ +..+++|++|+|++|.+..+++ +..+++|++|+|++|.+. .+| ..++|++|+++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~-~l~---~~~~L~~L~l~ 107 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELL---VGPSIETLHAA 107 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEE-EEE---ECTTCCEEECC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccc-ccc---CCCCcCEEECC
Confidence 56889999999988877 4577889999999999987765 888999999999998643 333 34889999999
Q ss_pred CCCCCccccccccCCCCcCEEecCCCCCCCcCCC-cC-CCCCCCEEeccCCCCCCccccccc---ccccEEEecccCCee
Q 041551 565 GCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPT-SI-HSKHLKELSLRGCSNLKIFPEITS---CHMWRLELTKVGIKE 639 (808)
Q Consensus 565 ~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~-~~-~l~~L~~L~L~~~~~l~~~p~~~~---~~L~~L~L~~n~i~~ 639 (808)
+|... .++. ..+++|++|++++|. ++.++. .+ .+++|++|++++|......|.... ..|+.|+|++|.++.
T Consensus 108 ~n~l~-~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 108 NNNIS-RVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp SSCCS-EEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCccC-CcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 88544 3432 346889999999864 555544 34 678899999999865544444432 348999999999988
Q ss_pred cCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCC-ccccc
Q 041551 640 LPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPC-ETHEV 718 (808)
Q Consensus 640 lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~ 718 (808)
+|.. ..+++|+.|+|++|.+ ..+|..+..+++|+.|++++|. +..+|.... ....+..+.+.+|.+.| ..+.+
T Consensus 184 ~~~~-~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~---~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 184 VKGQ-VVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNK-LVLIEKALR---FSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp EECC-CCCTTCCEEECCSSCC-CEECGGGGGGTTCSEEECTTSC-CCEECTTCC---CCTTCCEEECTTCCCBHHHHHHH
T ss_pred cccc-cccccCCEEECCCCcC-CcchhhhcccCcccEEECcCCc-ccchhhHhh---cCCCCCEEEccCCCccCcCHHHH
Confidence 8653 4588999999988887 5676678888999999999874 556665322 22245667888888873 44566
Q ss_pred ccCCCcccccccc
Q 041551 719 FCGLKHKSQRNLD 731 (808)
Q Consensus 719 f~~l~~l~~~~l~ 731 (808)
+..++.+..+++.
T Consensus 258 ~~~~~~L~~l~l~ 270 (317)
T 3o53_A 258 FSKNQRVQTVAKQ 270 (317)
T ss_dssp HHTCHHHHHHHHH
T ss_pred HhccccceEEECC
Confidence 6777777777665
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=1.2e-17 Score=188.84 Aligned_cols=228 Identities=12% Similarity=0.019 Sum_probs=166.1
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecC
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLR 564 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~ 564 (808)
+++|+.|++++|.+..+ +..+++|++|+|++|.+..+++ +..+++|++|+|++|.+. .+| ..++|++|+++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~---~~~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ-ELL---VGPSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE-EEE---ECTTCCEEECC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC-CCC---CCCCcCEEECc
Confidence 56899999999988876 4577899999999999987765 888999999999999643 333 33789999999
Q ss_pred CCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccccccc---ccccEEEecccCCeec
Q 041551 565 GCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITS---CHMWRLELTKVGIKEL 640 (808)
Q Consensus 565 ~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~---~~L~~L~L~~n~i~~l 640 (808)
+|.... ++. ..+++|+.|+|++|......|..+ .+++|++|+|++|......|..+. ..|+.|+|++|.|+.+
T Consensus 108 ~N~l~~-~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCC-EEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCC-CCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 985443 333 356889999999865433334444 678899999999866555555543 2389999999999888
Q ss_pred CcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCC-cccccc
Q 041551 641 PSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPC-ETHEVF 719 (808)
Q Consensus 641 p~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~f 719 (808)
|. ...+++|+.|+|++|.+ ..+|..+..+++|+.|++++|. +..+|..... ...+..+.+.+|.+.| ..+.++
T Consensus 185 ~~-~~~l~~L~~L~Ls~N~l-~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~---l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 185 KG-QVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNK-LVLIEKALRF---SQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EC-CCCCTTCCEEECCSSCC-CEECGGGGGGTTCSEEECTTSC-CCEECTTCCC---CTTCCEEECTTCCBCHHHHHHHH
T ss_pred cc-cccCCCCCEEECCCCCC-CCCCHhHcCCCCccEEEecCCc-Ccccchhhcc---CCCCCEEEcCCCCCcCcchHHHH
Confidence 65 44688999999988887 5566668888999999999875 5556554222 2234567788888774 344566
Q ss_pred cCCCccccccc
Q 041551 720 CGLKHKSQRNL 730 (808)
Q Consensus 720 ~~l~~l~~~~l 730 (808)
..++.+..+++
T Consensus 259 ~~l~~L~~l~~ 269 (487)
T 3oja_A 259 SKNQRVQTVAK 269 (487)
T ss_dssp TTCHHHHHHHH
T ss_pred HhCCCCcEEec
Confidence 66666666555
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=7.8e-17 Score=169.28 Aligned_cols=199 Identities=17% Similarity=0.077 Sum_probs=159.7
Q ss_pred cCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCccccccccCCCCcCEE
Q 041551 507 ICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDL 585 (808)
Q Consensus 507 ~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L 585 (808)
..+++++++++++++++.+|..+. ++|+.|+|++|.+....|. +.++++|++|+|++|. +..++.. +.+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEE
Confidence 356789999999999999998764 7899999999987666565 9999999999999985 5556554 899999999
Q ss_pred ecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccccccccc--ccEEEecccCCeecCcc-cccCCcCcEEEeecCCCc
Q 041551 586 DLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIKELPSS-IECLSNLQYLYIWDCSEL 661 (808)
Q Consensus 586 ~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~l 661 (808)
++++| .++.+|..+ .+++|++|++++|......|..+... |+.|+|++|.++.+|.. +..+++|+.|+|++|.+
T Consensus 83 ~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l- 160 (290)
T 1p9a_G 83 DLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL- 160 (290)
T ss_dssp ECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-
T ss_pred ECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC-
Confidence 99995 688899877 88999999999995444333444443 99999999999998765 68899999999999987
Q ss_pred cccccc-ccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcc
Q 041551 662 ESISSS-IFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCET 715 (808)
Q Consensus 662 ~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~ 715 (808)
..+|.. +..+++|+.|++++|. +..+|.. .+....+..+.+.+|...|..
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~---~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENS-LYTIPKG---FFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC-CCCCCTT---TTTTCCCSEEECCSCCBCCSG
T ss_pred CccCHHHhcCcCCCCEEECCCCc-CCccChh---hcccccCCeEEeCCCCccCcC
Confidence 566654 6789999999999985 5555543 333335566788888877643
No 73
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.72 E-value=1.2e-18 Score=166.23 Aligned_cols=99 Identities=20% Similarity=0.379 Sum_probs=86.2
Q ss_pred CCCCCcccEEecCccccCCCChHHH-HHHHHHh--CCcceEeeC-CcCCCCcchHHHHHHHHhhcceeEEecccccchhh
Q 041551 19 SRNSNKYDVFLSFRGEDTRDNFTSH-LYSALWH--NNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYASSGW 94 (808)
Q Consensus 19 ~~~~~~~dvflSy~~~D~~~~f~~~-l~~~l~~--~g~~~~~d~-~l~~g~~~~~~i~~ai~~s~~~v~v~S~~y~~s~~ 94 (808)
....+.|||||||+++| ..|+.+ |+.+|++ +|+++|+|+ ++.+|+.+.+.|.++|++||++|+|+|++|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 45679999999999999 589986 9999998 899999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhh-hcCCCeEEEEEee
Q 041551 95 CLDELSKIFECK-HDYGQIVIPVFCR 119 (808)
Q Consensus 95 c~~el~~~~~~~-~~~~~~v~Pv~~~ 119 (808)
|..|+..++.+. +.++.+++||||+
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~ 133 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLE 133 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEec
Confidence 999999988643 4456789999988
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=2.3e-17 Score=171.84 Aligned_cols=191 Identities=19% Similarity=0.131 Sum_probs=106.0
Q ss_pred hcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCc-C-CCCCCCE
Q 041551 530 QDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTS-I-HSKHLKE 607 (808)
Q Consensus 530 ~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~-~l~~L~~ 607 (808)
..+++|+.|++++|. +..++.+..+++|++|++++|.. ..+ +.+..+++|++|++++| .++.+|.. + .+++|++
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKL-HDI-SALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCC-CCC-GGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCC-cccccccccCCCCcEEECCCCCC-CCc-hhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 344445555555443 23334444455555555555432 222 24445555555555553 23333332 1 4455555
Q ss_pred EeccCCCCCCcccccccc--cccEEEecccCCeecCcc-cccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCC
Q 041551 608 LSLRGCSNLKIFPEITSC--HMWRLELTKVGIKELPSS-IECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSN 684 (808)
Q Consensus 608 L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~ 684 (808)
|++++|......+..+.. .|+.|+|++|.++.+|.. ++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~- 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ- 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-
Confidence 555555322222222221 255666666677777654 6899999999999998855555557899999999999986
Q ss_pred CccccCCCCCcCC-CCceeeecCCCCCCCCcccccccCCCcccccccccccc
Q 041551 685 LKRFLEIPSCNID-GGFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSL 735 (808)
Q Consensus 685 l~~lp~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~ 735 (808)
+..+|. ..+. ...+..+.+.+|.+.| .++.+..+++..|.+
T Consensus 193 l~~~~~---~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 193 LKSVPD---GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKH 234 (272)
T ss_dssp CSCCCT---TTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHT
T ss_pred CCccCH---HHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhC
Confidence 444443 2221 2234567888886554 445566666655544
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=1.8e-17 Score=169.15 Aligned_cols=188 Identities=15% Similarity=0.121 Sum_probs=101.3
Q ss_pred CceeEEEecCCCCCCc----ccCcccceEeecCCCC-cccccc-hhhcccccceeccCC-CCCCCCCCC-CCCCCCCcEE
Q 041551 490 AEVRHLEWARCPLKTL----NICAEKLVSLKMPRSK-VQQLWD-DVQDLVNLKEIDLSR-SESLTKLPD-LSRAKNLEIL 561 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~-l~~l~~-~~~~l~~L~~L~L~~-n~~~~~~p~-~~~l~~L~~L 561 (808)
++++.|++++|.++.+ +..+++|++|++++|. ++.+++ .+.++++|++|+|++ |.+....+. |.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 4566666666666555 3345566666666664 655554 355666666666665 443322222 5566666666
Q ss_pred ecCCCCCCccccccccCCCCcC---EEecCCCCCCCcCCCc-C-CCCCCC-EEeccCCCCCCccccccc--ccccEEEec
Q 041551 562 WLRGCLSLVETHSTIQYLNKLE---DLDLDYCISLTSLPTS-I-HSKHLK-ELSLRGCSNLKIFPEITS--CHMWRLELT 633 (808)
Q Consensus 562 ~L~~n~~l~~~p~~~~~l~~L~---~L~l~~~~~l~~lp~~-~-~l~~L~-~L~L~~~~~l~~~p~~~~--~~L~~L~L~ 633 (808)
++++|. +..+|. +..+++|+ +|++++|..++.+|.. + ++++|+ +|++++|. +..+|.... ..|+.|+|+
T Consensus 111 ~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECT
T ss_pred eCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcC
Confidence 666653 333554 55555555 6666665345555543 2 456666 66666653 334443221 125666666
Q ss_pred ccC-CeecCc-ccccC-CcCcEEEeecCCCcccccccccCCCCCCEEEeecCC
Q 041551 634 KVG-IKELPS-SIECL-SNLQYLYIWDCSELESISSSIFKLNSLESIDISNCS 683 (808)
Q Consensus 634 ~n~-i~~lp~-~~~~l-~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~ 683 (808)
+|. ++.+|. .+.++ ++|+.|++++|++ ..+|.. .+++|+.|++++|.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcc-ccCChh--HhccCceeeccCcc
Confidence 663 665543 35555 6666666655554 344443 45566666665553
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=2.6e-16 Score=163.69 Aligned_cols=199 Identities=19% Similarity=0.225 Sum_probs=153.7
Q ss_pred cccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCcccccc-ccCCCCcCEEe
Q 041551 509 AEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVETHST-IQYLNKLEDLD 586 (808)
Q Consensus 509 ~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~-~~~l~~L~~L~ 586 (808)
..+++.++++++.++.+|..+. ++|+.|+|++|.+....+. +.++++|++|+|++|.. ..+|.. +..+++|++|+
T Consensus 15 ~~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 15 NNNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLW 91 (270)
T ss_dssp ETTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEE
T ss_pred CCCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEE
Confidence 3467899999999999998664 6899999999986655554 99999999999999854 455554 68899999999
Q ss_pred cCCCCCCCcCCCcC--CCCCCCEEeccCCCCCCcccccccc--cccEEEecccCCeecCcc-cccCCcCcEEEeecCCCc
Q 041551 587 LDYCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITSC--HMWRLELTKVGIKELPSS-IECLSNLQYLYIWDCSEL 661 (808)
Q Consensus 587 l~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~l 661 (808)
+++| .++.+|... .+++|++|++++|......+..+.. .|+.|+|++|.++.+|.. +..+++|+.|+|++|.+.
T Consensus 92 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 170 (270)
T 2o6q_A 92 VTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170 (270)
T ss_dssp CCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence 9996 577777654 7899999999999654444444433 399999999999998776 789999999999999885
Q ss_pred ccccccccCCCCCCEEEeecCCCCccccCCCCCcCC-CCceeeecCCCCCCCCcc
Q 041551 662 ESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNID-GGFAFCIVVPHCWEPCET 715 (808)
Q Consensus 662 ~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~-~~~~~~l~l~~~~~~~~~ 715 (808)
...+..+..+++|+.|++++|. +..+|.. .+. ...+..+.+.+|.+.|..
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~---~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 171 RVPEGAFDKLTELKTLKLDNNQ-LKRVPEG---AFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CSCCCTT---TTTTCTTCCEEECCSSCBCCSS
T ss_pred EeChhHhccCCCcCEEECCCCc-CCcCCHH---HhccccCCCEEEecCCCeeCCC
Confidence 4444558899999999999984 5555432 221 123455777777766643
No 77
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.71 E-value=1.3e-16 Score=179.91 Aligned_cols=214 Identities=20% Similarity=0.210 Sum_probs=108.7
Q ss_pred ccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCC
Q 041551 510 EKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDY 589 (808)
Q Consensus 510 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~ 589 (808)
++|+.|++++|.+..++ .+..+++|++|++++|.+.... .++.+++|+.|++++|. +..+ +.+..+++|+.|++++
T Consensus 177 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 177 TTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQ-LKDI-GTLASLTNLTDLDLAN 252 (466)
T ss_dssp TTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCS
T ss_pred CCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCcccccc-cccccCCCCEEECCCCC-cccc-hhhhcCCCCCEEECCC
Confidence 34444444444444432 2444444555555444332222 24444555555555542 2222 2344555555555555
Q ss_pred CCCCCcCCCcCCCCCCCEEeccCCCCCCccccccc-ccccEEEecccCCeecCcccccCCcCcEEEeecCCCcccccccc
Q 041551 590 CISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITS-CHMWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELESISSSI 668 (808)
Q Consensus 590 ~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~-~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~~~ 668 (808)
|. +..++....+++|+.|++++|... .+|.... ..|+.|++++|.++.+|. ++.+++|+.|++++|.+.+..| +
T Consensus 253 n~-l~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~ 327 (466)
T 1o6v_A 253 NQ-ISNLAPLSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--V 327 (466)
T ss_dssp SC-CCCCGGGTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--G
T ss_pred Cc-cccchhhhcCCCCCEEECCCCccC-ccccccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--h
Confidence 32 333333234555555555555322 2222111 126666666666665544 5566666666666665533332 5
Q ss_pred cCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCCCccccccccccccccee
Q 041551 669 FKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLGRIS 739 (808)
Q Consensus 669 ~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~~~~ 739 (808)
..+++|+.|++++|+ +..++.+. ....+..+.+.+|.+....+ +..++.+..+++++|.+...+
T Consensus 328 ~~l~~L~~L~l~~n~-l~~~~~l~----~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNK-VSDVSSLA----NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp GGCTTCCEEECCSSC-CCCCGGGT----TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred ccCccCCEeECCCCc-cCCchhhc----cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence 566666666666663 33332211 11234556777777776655 677788888888877766543
No 78
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=184.49 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=79.4
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccc-hhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWD-DVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
++.++.|++++|.+..+ +..+++|++|+|++|.+..+++ .+.++++|++|+|++|.+....|. |+++++|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 35677777777776655 4456677777777777776643 366777777777777764444443 67777777777
Q ss_pred cCCCCCCccccc-cccCCCCcCEEecCCCCCCC-cCCCcC-CCCCCCEEeccCCCC
Q 041551 563 LRGCLSLVETHS-TIQYLNKLEDLDLDYCISLT-SLPTSI-HSKHLKELSLRGCSN 615 (808)
Q Consensus 563 L~~n~~l~~~p~-~~~~l~~L~~L~l~~~~~l~-~lp~~~-~l~~L~~L~L~~~~~ 615 (808)
+++|. +..+|. .++++++|++|++++|.... .+|..+ ++++|++|++++|..
T Consensus 107 L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred ccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 77763 333333 46677777777777754222 345555 567777777777643
No 79
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=187.87 Aligned_cols=241 Identities=13% Similarity=0.094 Sum_probs=177.0
Q ss_pred CCceeEEEecCCCCCCc---ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCC
Q 041551 489 FAEVRHLEWARCPLKTL---NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRG 565 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~ 565 (808)
+++|+.|++.+|.+..+ .... +|+.|++++|.+..+|. ..+++|+.|++++|......+. ..+++|++|++++
T Consensus 281 l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~ 356 (570)
T 2z63_A 281 LTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSR 356 (570)
T ss_dssp GTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCS
T ss_pred cCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcC
Confidence 67888899988887766 3444 88889999998888876 4778888888888876555444 6788899999988
Q ss_pred CCCCccc--cccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCcccc-cccc--cccEEEecccCCee
Q 041551 566 CLSLVET--HSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPE-ITSC--HMWRLELTKVGIKE 639 (808)
Q Consensus 566 n~~l~~~--p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~-~~~~--~L~~L~L~~n~i~~ 639 (808)
|...... |..+..+++|++|++++|. +..+|..+ .+++|++|++++|......|. .+.. .|+.|++++|.+..
T Consensus 357 n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 435 (570)
T 2z63_A 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435 (570)
T ss_dssp SCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred CccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence 8544322 5677888889999998864 55555545 778888999888854444332 2222 38888898888886
Q ss_pred c-CcccccCCcCcEEEeecCCCc-ccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccc
Q 041551 640 L-PSSIECLSNLQYLYIWDCSEL-ESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHE 717 (808)
Q Consensus 640 l-p~~~~~l~~L~~L~L~~n~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 717 (808)
. |..+.++++|+.|++++|.+. +.+|..+..+++|+.|++++|......|..... ...+..+.+.+|.+....+.
T Consensus 436 ~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS---LSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT---CTTCCEEECCSSCCSCCCTT
T ss_pred cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhc---ccCCCEEeCCCCcCCCCCHH
Confidence 4 666888888999999888875 468888888889999999888643322332221 12456678888888877777
Q ss_pred cccCCCcccccccccccccc
Q 041551 718 VFCGLKHKSQRNLDRRSLGR 737 (808)
Q Consensus 718 ~f~~l~~l~~~~l~~n~~~~ 737 (808)
.|..++++..+++++|.+..
T Consensus 513 ~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTTTCTTCCEEECCSSCBCC
T ss_pred HhhcccCCcEEEecCCcccC
Confidence 88888888888888887653
No 80
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=3.2e-17 Score=174.86 Aligned_cols=188 Identities=13% Similarity=0.107 Sum_probs=155.5
Q ss_pred CCceeEEEecCCCCCCc--ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCC
Q 041551 489 FAEVRHLEWARCPLKTL--NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGC 566 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n 566 (808)
+++|++|++++|.+... +..+++|++|++++|.++.++. +++|++|++++|.+....+ ..+++|++|++++|
T Consensus 57 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N 130 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC--SRGQGKKNIYLANN 130 (317)
T ss_dssp CTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSS
T ss_pred CCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCc--cccCCCCEEECCCC
Confidence 68999999999998766 6678899999999999988763 4899999999997654433 34788999999999
Q ss_pred CCCccccccccCCCCcCEEecCCCCCCCcC-CCcC--CCCCCCEEeccCCCCCCcccccc-cccccEEEecccCCeecCc
Q 041551 567 LSLVETHSTIQYLNKLEDLDLDYCISLTSL-PTSI--HSKHLKELSLRGCSNLKIFPEIT-SCHMWRLELTKVGIKELPS 642 (808)
Q Consensus 567 ~~l~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~--~l~~L~~L~L~~~~~l~~~p~~~-~~~L~~L~L~~n~i~~lp~ 642 (808)
......|..+..+++|++|++++|. ++.+ |..+ .+++|++|++++|. +..+|... ...|+.|+|++|.++.+|.
T Consensus 131 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 208 (317)
T 3o53_A 131 KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGP 208 (317)
T ss_dssp CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECG
T ss_pred CCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCCCcCCcchh
Confidence 6665556678899999999999975 5544 4433 57999999999995 44445443 3349999999999999999
Q ss_pred ccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCC
Q 041551 643 SIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNL 685 (808)
Q Consensus 643 ~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l 685 (808)
.+..+++|+.|+|++|.+ ..+|..+..+++|+.|++++|+..
T Consensus 209 ~~~~l~~L~~L~L~~N~l-~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 209 EFQSAAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGGTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCCB
T ss_pred hhcccCcccEEECcCCcc-cchhhHhhcCCCCCEEEccCCCcc
Confidence 999999999999999987 678988999999999999999754
No 81
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.70 E-value=5.8e-18 Score=158.75 Aligned_cols=100 Identities=23% Similarity=0.370 Sum_probs=88.0
Q ss_pred CcccEEecCccccC---------CCChHHHHHH-HHH-hCCcceEeeC-CcCCCCcchHHHHHHHHhhcceeEEeccccc
Q 041551 23 NKYDVFLSFRGEDT---------RDNFTSHLYS-ALW-HNNIETFIDN-DLKRGDEISQSLLDTIEASAISIIIFSERYA 90 (808)
Q Consensus 23 ~~~dvflSy~~~D~---------~~~f~~~l~~-~l~-~~g~~~~~d~-~l~~g~~~~~~i~~ai~~s~~~v~v~S~~y~ 90 (808)
+.|||||||+++|+ ++.|+.++.. .|+ +.|+++|+|+ ++.+|+.+.+.|.++|++||.+|+|+|++|.
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 3578888665 699 7999999999 9999999999999999999999999999996
Q ss_pred -chhhhHHHHHHHHHhh-hcCCCeEEEEEeeeCC
Q 041551 91 -SSGWCLDELSKIFECK-HDYGQIVIPVFCRVDP 122 (808)
Q Consensus 91 -~s~~c~~el~~~~~~~-~~~~~~v~Pv~~~v~p 122 (808)
.|.||..|+..++.+. .+++..++||++.-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999876 5557899999987443
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.70 E-value=2.6e-16 Score=186.28 Aligned_cols=245 Identities=18% Similarity=0.088 Sum_probs=183.9
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCccccc-chhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEe
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLW-DDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILW 562 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~ 562 (808)
++++++|++++|.+..+ +..+++|++|+|++|.+..++ ..+.++++|++|+|++|.+....+. |+++++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 47999999999998887 456789999999999999774 5589999999999999976544444 99999999999
Q ss_pred cCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccccccc----ccccEEEecccCC
Q 041551 563 LRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITS----CHMWRLELTKVGI 637 (808)
Q Consensus 563 L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~----~~L~~L~L~~n~i 637 (808)
|++|......|..++++++|++|++++|......|..+ ++++|++|++++|......+.... ..|+.|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 99996654445679999999999999976544445555 889999999999965444444322 3499999999999
Q ss_pred eecC-cccccC---------------------------CcCcEEEeecCCCcccccccccCCCC--CCEEEeecCCCCcc
Q 041551 638 KELP-SSIECL---------------------------SNLQYLYIWDCSELESISSSIFKLNS--LESIDISNCSNLKR 687 (808)
Q Consensus 638 ~~lp-~~~~~l---------------------------~~L~~L~L~~n~~l~~lp~~~~~l~~--L~~L~l~~c~~l~~ 687 (808)
+.++ ..+..+ ++|+.|++++|.+.+..|..+..++. |+.|++++|. +..
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~ 262 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNV 262 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC-CCE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC-cCc
Confidence 8764 445544 45667777777766666666766644 8888888875 333
Q ss_pred ccCCCCCcCCCCceeeecCCCCCCCCcccccccCCCccccccccccccc
Q 041551 688 FLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLG 736 (808)
Q Consensus 688 lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~ 736 (808)
++.. .+-....+..+.+.+|.+....+..|..++++..+++++|...
T Consensus 263 ~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 263 VGND--SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp ECTT--TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred cCcc--cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence 3311 1111123456778888888777778888888888888876543
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=2.2e-16 Score=162.34 Aligned_cols=171 Identities=20% Similarity=0.215 Sum_probs=113.1
Q ss_pred ccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCccccccccCCCCcCEEecC
Q 041551 510 EKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLD 588 (808)
Q Consensus 510 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~ 588 (808)
...+.++++++.++.+|..+. ++|+.|+|++|.+....|. +.++++|++|+|++|......|..+..+++|++|+|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 345566666666666665544 4666777777765554443 6667777777777765444444456667777777777
Q ss_pred CCCCCCcCCCcC--CCCCCCEEeccCCCCCCccccc-ccc--cccEEEecccCCeecCc-ccccCCcCcEEEeecCCCcc
Q 041551 589 YCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEI-TSC--HMWRLELTKVGIKELPS-SIECLSNLQYLYIWDCSELE 662 (808)
Q Consensus 589 ~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~-~~~--~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~l~ 662 (808)
+| .++.+|... .+++|++|+|++|. +..+|.. +.. .|+.|+|++|.|+.+|. .++.+++|+.|+|++|.+.+
T Consensus 92 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 92 NN-QLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CC-cccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 64 345555432 56677777777763 3333332 222 27777777788888876 58889999999999998855
Q ss_pred cccccccCCCCCCEEEeecCCC
Q 041551 663 SISSSIFKLNSLESIDISNCSN 684 (808)
Q Consensus 663 ~lp~~~~~l~~L~~L~l~~c~~ 684 (808)
..|..+..+++|+.|++++|+.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCB
T ss_pred cCHHHHhCCCCCCEEEeeCCce
Confidence 5555688899999999999864
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=5.4e-16 Score=173.49 Aligned_cols=230 Identities=20% Similarity=0.145 Sum_probs=138.0
Q ss_pred CCceeEEEecCCCCCCcccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCC
Q 041551 489 FAEVRHLEWARCPLKTLNICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLS 568 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~ 568 (808)
+++|++|++++|.+..+...+++|++|++++|.++.+| .++++++|++|++++|.+. .+|.. ..+|++|++++|.
T Consensus 110 ~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~~--~~~L~~L~L~~n~- 184 (454)
T 1jl5_A 110 PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK-KLPDL--PPSLEFIAAGNNQ- 184 (454)
T ss_dssp CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-CCCCC--CTTCCEEECCSSC-
T ss_pred cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc-ccCCC--cccccEEECcCCc-
Confidence 45677777777776666444467777777777777766 4777777777777777543 35542 2477777777763
Q ss_pred CccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccc-cccEEEecccCCeecCcccccC
Q 041551 569 LVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSC-HMWRLELTKVGIKELPSSIECL 647 (808)
Q Consensus 569 l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~-~L~~L~L~~n~i~~lp~~~~~l 647 (808)
+..+| .++++++|++|++++| .++.+|... ++|++|++++|. +..+|..... .|+.|++++|.++.+|.. +
T Consensus 185 l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~~--~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~l~~N~l~~l~~~---~ 256 (454)
T 1jl5_A 185 LEELP-ELQNLPFLTAIYADNN-SLKKLPDLP--LSLESIVAGNNI-LEELPELQNLPFLTTIYADNNLLKTLPDL---P 256 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSS-CCSSCCCCC--TTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSCCSSCCSC---C
T ss_pred CCcCc-cccCCCCCCEEECCCC-cCCcCCCCc--CcccEEECcCCc-CCcccccCCCCCCCEEECCCCcCCccccc---c
Confidence 33455 5677777777777775 355555432 467777777773 4456642221 177777777777776653 3
Q ss_pred CcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCC---------C-----CceeeecCCCCCCCC
Q 041551 648 SNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNID---------G-----GFAFCIVVPHCWEPC 713 (808)
Q Consensus 648 ~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~---------~-----~~~~~l~l~~~~~~~ 713 (808)
++|+.|++++|.+ ..+|.. +++|+.|++++|. +..+|.+|..+.. + ..+..+.+.+|.+..
T Consensus 257 ~~L~~L~l~~N~l-~~l~~~---~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 257 PSLEALNVRDNYL-TDLPEL---PQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp TTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC
T ss_pred cccCEEECCCCcc-cccCcc---cCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc
Confidence 6777777777765 445542 3677788887764 5556655532210 0 112234444444443
Q ss_pred cccccccCCCcccccccccccccceee
Q 041551 714 ETHEVFCGLKHKSQRNLDRRSLGRISY 740 (808)
Q Consensus 714 ~~~~~f~~l~~l~~~~l~~n~~~~~~~ 740 (808)
.+ ..++++..+++++|.+..++.
T Consensus 332 -lp---~~~~~L~~L~L~~N~l~~lp~ 354 (454)
T 1jl5_A 332 -LP---ALPPRLERLIASFNHLAEVPE 354 (454)
T ss_dssp -CC---CCCTTCCEEECCSSCCSCCCC
T ss_pred -cc---ccCCcCCEEECCCCccccccc
Confidence 11 124666667777776665544
No 85
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=6e-16 Score=178.62 Aligned_cols=220 Identities=21% Similarity=0.167 Sum_probs=155.5
Q ss_pred CceeEEEecCCCCCCc-ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCC
Q 041551 490 AEVRHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLS 568 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~ 568 (808)
.+++.|++++|.++.+ ...+++|+.|+|++|.++.+|. .+++|++|+|++|. ++.+|. .+++|++|+|++| .
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N-~ 112 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIFSN-P 112 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEECSC-C
T ss_pred CCCcEEEecCCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEECcCC-c
Confidence 3588999999999988 3345899999999999999987 67999999999997 456776 7899999999998 4
Q ss_pred CccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCcccccCC
Q 041551 569 LVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSSIECLS 648 (808)
Q Consensus 569 l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~ 648 (808)
+..+|. .+++|+.|++++| .++.+|.. +++|++|+|++| .+..+|... ..|+.|++++|.|+.+| ..++
T Consensus 113 l~~l~~---~l~~L~~L~L~~N-~l~~lp~~--l~~L~~L~Ls~N-~l~~l~~~~-~~L~~L~L~~N~l~~l~---~~~~ 181 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGN-QLTSLPVL--PPGLQELSVSDN-QLASLPALP-SELCKLWAYNNQLTSLP---MLPS 181 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSCCCCCC-TTCCEEECCSSCCSCCC---CCCT
T ss_pred CCCCCC---CCCCcCEEECCCC-CCCcCCCC--CCCCCEEECcCC-cCCCcCCcc-CCCCEEECCCCCCCCCc---ccCC
Confidence 556766 6789999999996 58888875 489999999999 455566532 34777777777777777 3456
Q ss_pred cCcEEEeecCCCccccccccc-----------------CCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCC
Q 041551 649 NLQYLYIWDCSELESISSSIF-----------------KLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWE 711 (808)
Q Consensus 649 ~L~~L~L~~n~~l~~lp~~~~-----------------~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~ 711 (808)
+|+.|++++|.+ ..+|..+. .+++|+.|++++| .+..+|..+ ..+..+.+++|.+
T Consensus 182 ~L~~L~Ls~N~l-~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~L~~lp~~l------~~L~~L~Ls~N~L 253 (622)
T 3g06_A 182 GLQELSVSDNQL-ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN-RLTSLPVLP------SELKELMVSGNRL 253 (622)
T ss_dssp TCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSS-CCSCCCCCC------TTCCEEECCSSCC
T ss_pred CCcEEECCCCCC-CCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCC-ccCcCCCCC------CcCcEEECCCCCC
Confidence 677777776665 34443221 1244555555554 233344211 1234566667766
Q ss_pred CCcccccccCCCccccccccccccccee
Q 041551 712 PCETHEVFCGLKHKSQRNLDRRSLGRIS 739 (808)
Q Consensus 712 ~~~~~~~f~~l~~l~~~~l~~n~~~~~~ 739 (808)
..... .++++..+++++|.+..++
T Consensus 254 ~~lp~----~~~~L~~L~Ls~N~L~~lp 277 (622)
T 3g06_A 254 TSLPM----LPSGLLSLSVYRNQLTRLP 277 (622)
T ss_dssp SCCCC----CCTTCCEEECCSSCCCSCC
T ss_pred CcCCc----ccccCcEEeCCCCCCCcCC
Confidence 53222 4566777788888777554
No 86
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=1.8e-16 Score=180.77 Aligned_cols=181 Identities=21% Similarity=0.259 Sum_probs=145.2
Q ss_pred ceeEEEecCCCCCCc-ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCC
Q 041551 491 EVRHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSL 569 (808)
Q Consensus 491 ~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l 569 (808)
+|+.|++++|.+..+ ...+++|+.|+|++|.++.+| ..+++|++|+|++|.+.. +|.+.+ +|++|+|++|. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N~-l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNNQ-L 132 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSC-C
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCCc-C
Confidence 688899999998887 324588999999999999888 457899999999997655 666544 89999999985 4
Q ss_pred ccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCcccccCCc
Q 041551 570 VETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSSIECLSN 649 (808)
Q Consensus 570 ~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~ 649 (808)
..+|. .+++|+.|+|++| .++.+|. .+++|++|+|++|. ++.+|. +...|+.|+|++|.|+.+|. +.. +
T Consensus 133 ~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~-L~~lp~-l~~~L~~L~Ls~N~L~~lp~-~~~--~ 201 (571)
T 3cvr_A 133 TMLPE---LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQ-LTFLPE-LPESLEALDVSTNLLESLPA-VPV--R 201 (571)
T ss_dssp SCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCSSCCSSCCC-CC----
T ss_pred CCCCC---cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCC-CCCcch-hhCCCCEEECcCCCCCchhh-HHH--h
Confidence 45776 6889999999985 5777887 57899999999985 555777 55669999999999999988 655 7
Q ss_pred C-------cEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccC
Q 041551 650 L-------QYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLE 690 (808)
Q Consensus 650 L-------~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 690 (808)
| +.|+|++|.+ +.+|..+..+++|+.|+|++|+.-..+|.
T Consensus 202 L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 202 NHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp ------CCEEEECCSSCC-CCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 7 9999998887 67898888899999999999876555543
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=8.2e-16 Score=172.01 Aligned_cols=227 Identities=21% Similarity=0.162 Sum_probs=124.2
Q ss_pred CCceeEEEecCCCCCCcccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCC
Q 041551 489 FAEVRHLEWARCPLKTLNICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLS 568 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~ 568 (808)
+++|++|++++|.+..+...+.+|++|++++|.+..+| .++++++|++|++++|.+. .+|.+ .++|++|++++|.
T Consensus 152 l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~-~l~~~--~~~L~~L~l~~n~- 226 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLK-KLPDL--PLSLESIVAGNNI- 226 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCCC--CTTCCEEECCSSC-
T ss_pred CCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCC-cCCCC--cCcccEEECcCCc-
Confidence 67778888888777776555567888888888777776 5777788888888877644 34442 2477777777773
Q ss_pred CccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCccc----
Q 041551 569 LVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSSI---- 644 (808)
Q Consensus 569 l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~---- 644 (808)
+..+| .++.+++|++|++++| .++.+|.. +++|++|++++|. +..+|... ..|+.|++++|.++.+|...
T Consensus 227 l~~lp-~~~~l~~L~~L~l~~N-~l~~l~~~--~~~L~~L~l~~N~-l~~l~~~~-~~L~~L~ls~N~l~~l~~~~~~L~ 300 (454)
T 1jl5_A 227 LEELP-ELQNLPFLTTIYADNN-LLKTLPDL--PPSLEALNVRDNY-LTDLPELP-QSLTFLDVSENIFSGLSELPPNLY 300 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSS-CCSSCCSC--CTTCCEEECCSSC-CSCCCCCC-TTCCEEECCSSCCSEESCCCTTCC
T ss_pred CCccc-ccCCCCCCCEEECCCC-cCCccccc--ccccCEEECCCCc-ccccCccc-CcCCEEECcCCccCcccCcCCcCC
Confidence 34666 4777788888888775 45556653 3667777777763 34454432 33666666666666544311
Q ss_pred ------------ccC-CcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCC
Q 041551 645 ------------ECL-SNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWE 711 (808)
Q Consensus 645 ------------~~l-~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~ 711 (808)
..+ ++|+.|++++|.+ ..+|.. +++|+.|++++|. +..+|..+ ..+..+.+.+|.+
T Consensus 301 ~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l-~~lp~~---~~~L~~L~L~~N~-l~~lp~~l------~~L~~L~L~~N~l 369 (454)
T 1jl5_A 301 YLNASSNEIRSLCDLPPSLEELNVSNNKL-IELPAL---PPRLERLIASFNH-LAEVPELP------QNLKQLHVEYNPL 369 (454)
T ss_dssp EEECCSSCCSEECCCCTTCCEEECCSSCC-SCCCCC---CTTCCEEECCSSC-CSCCCCCC------TTCCEEECCSSCC
T ss_pred EEECcCCcCCcccCCcCcCCEEECCCCcc-cccccc---CCcCCEEECCCCc-cccccchh------hhccEEECCCCCC
Confidence 011 3455555555544 224432 3555555555552 33444311 1233455555555
Q ss_pred CC--cccccccCC-------------Ccccccccccccccc
Q 041551 712 PC--ETHEVFCGL-------------KHKSQRNLDRRSLGR 737 (808)
Q Consensus 712 ~~--~~~~~f~~l-------------~~l~~~~l~~n~~~~ 737 (808)
.+ ..|..+..+ ++++.+++++|.+..
T Consensus 370 ~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp SSCCCCCTTCCEEECCC------------------------
T ss_pred CcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 54 344444444 455555665555543
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=1.4e-16 Score=179.99 Aligned_cols=215 Identities=14% Similarity=0.076 Sum_probs=169.2
Q ss_pred cCcccceEeecCCCCccccc-chhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccccCCCCcCEE
Q 041551 507 ICAEKLVSLKMPRSKVQQLW-DDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDL 585 (808)
Q Consensus 507 ~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L 585 (808)
..+++|++|+|++|.+..++ ..+..+++|++|+|++|.+....| +..+++|++|+|++|. +..+| ..++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE----ECTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC----CCCCcCEE
Confidence 34568999999999999886 569999999999999998655554 9999999999999994 44444 33899999
Q ss_pred ecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCccccccccc--ccEEEecccCCeec-Ccccc-cCCcCcEEEeecCCCc
Q 041551 586 DLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIKEL-PSSIE-CLSNLQYLYIWDCSEL 661 (808)
Q Consensus 586 ~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~~l-p~~~~-~l~~L~~L~L~~n~~l 661 (808)
++++|. +..+|.. .+++|+.|+|++|......|..+..+ |+.|+|++|.++.+ |..+. .+++|+.|+|++|.+
T Consensus 105 ~L~~N~-l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l- 181 (487)
T 3oja_A 105 HAANNN-ISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI- 181 (487)
T ss_dssp ECCSSC-CCCEEEC-CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC-
T ss_pred ECcCCc-CCCCCcc-ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc-
Confidence 999964 5555543 46899999999997666556555443 99999999999974 66665 799999999999997
Q ss_pred ccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCCCccccccccccccc
Q 041551 662 ESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLG 736 (808)
Q Consensus 662 ~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~ 736 (808)
..+|. ...+++|+.|+|++|. +..+|.. +.....+..+.+.+|.+.. .|..+..++++..+++++|.+.
T Consensus 182 ~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~---~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 182 YDVKG-QVVFAKLKTLDLSSNK-LAFMGPE---FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEEEC-CCCCTTCCEEECCSSC-CCEECGG---GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred ccccc-cccCCCCCEEECCCCC-CCCCCHh---HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 45554 4569999999999985 5555443 2222345678899998885 5667888999999999999876
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=2.2e-16 Score=170.84 Aligned_cols=195 Identities=17% Similarity=0.206 Sum_probs=134.3
Q ss_pred EEEecCCCCCCcc-cCcccceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCCC--CCCCCCCcEEecCCCCCC
Q 041551 494 HLEWARCPLKTLN-ICAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLPD--LSRAKNLEILWLRGCLSL 569 (808)
Q Consensus 494 ~L~l~~~~l~~l~-~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l 569 (808)
.++.+++.++.++ .-+.++++|+|++|+|+.+|+. |.++++|++|+|++|.+.+.+|. |.++++|..+.+.++..+
T Consensus 13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 3455566666662 2346788888888888888764 78888888888888877666663 777877776444333344
Q ss_pred ccc-cccccCCCCcCEEecCCCCCCCcCCCcC--CCCCCCEEeccCCCCCCccccccc----ccccEEEecccCCeecCc
Q 041551 570 VET-HSTIQYLNKLEDLDLDYCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITS----CHMWRLELTKVGIKELPS 642 (808)
Q Consensus 570 ~~~-p~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~----~~L~~L~L~~n~i~~lp~ 642 (808)
..+ |..+..+++|++|++++| .+..+|... ...++..|++.++..+..+|.... ..++.|+|++|.|+.+|.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~ 171 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred cccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh
Confidence 444 456778888888888874 466666543 455677778777767766664321 127778888888888877
Q ss_pred ccccCCcCcEEEeecCCCccccccc-ccCCCCCCEEEeecCCCCccccC
Q 041551 643 SIECLSNLQYLYIWDCSELESISSS-IFKLNSLESIDISNCSNLKRFLE 690 (808)
Q Consensus 643 ~~~~l~~L~~L~L~~n~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~ 690 (808)
.+....+|+.|++++|+.++.+|.. +..+++|+.|++++|. ++.+|.
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~ 219 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS 219 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS
T ss_pred hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh
Confidence 7767778888888776666777754 6778888888888873 555554
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=170.24 Aligned_cols=169 Identities=17% Similarity=0.137 Sum_probs=77.4
Q ss_pred ccceEeecCCCCccc-ccchh--hcccccceeccCCCCCCCCCCC-----CCCCCCCcEEecCCCCCCccccccccCCCC
Q 041551 510 EKLVSLKMPRSKVQQ-LWDDV--QDLVNLKEIDLSRSESLTKLPD-----LSRAKNLEILWLRGCLSLVETHSTIQYLNK 581 (808)
Q Consensus 510 ~~L~~L~L~~n~l~~-l~~~~--~~l~~L~~L~L~~n~~~~~~p~-----~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~ 581 (808)
.+|++|++++|.+.. .|..+ ..+++|++|+|++|.+....|. +..+++|++|+|++|......|..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555542 23333 4555555555555544433331 234555555555555443333344555555
Q ss_pred cCEEecCCCCCCCc--CCC--cC-CCCCCCEEeccCCCCCCccccc----cc--ccccEEEecccCCeec-CcccccC--
Q 041551 582 LEDLDLDYCISLTS--LPT--SI-HSKHLKELSLRGCSNLKIFPEI----TS--CHMWRLELTKVGIKEL-PSSIECL-- 647 (808)
Q Consensus 582 L~~L~l~~~~~l~~--lp~--~~-~l~~L~~L~L~~~~~l~~~p~~----~~--~~L~~L~L~~n~i~~l-p~~~~~l-- 647 (808)
|++|+|++|...+. ++. .. .+++|++|+|++|. ++.+|.. .. ..|++|+|++|.++.+ |..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 55555555432221 111 11 34555555555552 2333321 11 1255555555555544 4444443
Q ss_pred -CcCcEEEeecCCCcccccccccCCCCCCEEEeecC
Q 041551 648 -SNLQYLYIWDCSELESISSSIFKLNSLESIDISNC 682 (808)
Q Consensus 648 -~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c 682 (808)
++|+.|+|++|.+ +.+|..+. ++|+.|++++|
T Consensus 250 ~~~L~~L~Ls~N~l-~~lp~~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 250 SSALNSLNLSFAGL-EQVPKGLP--AKLRVLDLSSN 282 (310)
T ss_dssp CTTCCCEECCSSCC-CSCCSCCC--SCCSCEECCSC
T ss_pred cCcCCEEECCCCCC-Cchhhhhc--CCCCEEECCCC
Confidence 3555555555554 24454442 45555555554
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=1.6e-15 Score=160.93 Aligned_cols=194 Identities=19% Similarity=0.197 Sum_probs=152.1
Q ss_pred ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccccCCCCcCEE
Q 041551 506 NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDL 585 (808)
Q Consensus 506 ~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L 585 (808)
...+++|++|++++|.+..++ .+..+++|++|+|++|.+. .++.+..+++|++|+|++|. +..++ .+..+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGNP-LKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGGGTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-CChhHccCCCCCEEEccCCc-CCCch-hhcCCCCCCEE
Confidence 345789999999999999986 6899999999999999754 44559999999999999995 55554 68999999999
Q ss_pred ecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCccccccc-ccccEEEecccCCeecCcccccCCcCcEEEeecCCCcccc
Q 041551 586 DLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITS-CHMWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELESI 664 (808)
Q Consensus 586 ~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~-~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~l 664 (808)
++++| .++.+|....+++|++|++++|. +..++.... ..|+.|+|++|.++.+|. +..+++|+.|++++|.+ ..+
T Consensus 113 ~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~ 188 (308)
T 1h6u_A 113 DLTST-QITDVTPLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI-SDI 188 (308)
T ss_dssp ECTTS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCC
T ss_pred ECCCC-CCCCchhhcCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc-CcC
Confidence 99996 57778775588999999999995 445554322 239999999999999877 89999999999999987 556
Q ss_pred cccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCC
Q 041551 665 SSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPC 713 (808)
Q Consensus 665 p~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~ 713 (808)
|. +..+++|++|++++|. +..++.+ .....+..+.+.+|.+.+
T Consensus 189 ~~-l~~l~~L~~L~L~~N~-l~~~~~l----~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 SP-LASLPNLIEVHLKNNQ-ISDVSPL----ANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG-GGGCTTCCEEECTTSC-CCBCGGG----TTCTTCCEEEEEEEEEEC
T ss_pred hh-hcCCCCCCEEEccCCc-cCccccc----cCCCCCCEEEccCCeeec
Confidence 54 8889999999999985 4455521 112233445666666544
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=3e-16 Score=159.98 Aligned_cols=187 Identities=14% Similarity=0.150 Sum_probs=139.9
Q ss_pred CCCcccCcccceEeecCCCCcccccc-hhhcccccceeccCCCCCCCCCC-C-CCCCCCCcEEecCCCCCCcccc-cccc
Q 041551 502 LKTLNICAEKLVSLKMPRSKVQQLWD-DVQDLVNLKEIDLSRSESLTKLP-D-LSRAKNLEILWLRGCLSLVETH-STIQ 577 (808)
Q Consensus 502 l~~l~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~~~~~~p-~-~~~l~~L~~L~L~~n~~l~~~p-~~~~ 577 (808)
++.++..+.+|+.|++++|+++.+|+ .+.++++|++|++++|..++.+| . |.++++|++|++++|..+..+| ..+.
T Consensus 23 l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~ 102 (239)
T 2xwt_C 23 IQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK 102 (239)
T ss_dssp CSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEE
T ss_pred ccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhC
Confidence 44443355689999999999998877 58899999999999997445554 3 8899999999999833455555 5688
Q ss_pred CCCCcCEEecCCCCCCCcCCCcCCCCCCC---EEeccCCCCCCccccc-ccc--ccc-EEEecccCCeecCcccccCCcC
Q 041551 578 YLNKLEDLDLDYCISLTSLPTSIHSKHLK---ELSLRGCSNLKIFPEI-TSC--HMW-RLELTKVGIKELPSSIECLSNL 650 (808)
Q Consensus 578 ~l~~L~~L~l~~~~~l~~lp~~~~l~~L~---~L~L~~~~~l~~~p~~-~~~--~L~-~L~L~~n~i~~lp~~~~~l~~L 650 (808)
++++|++|++++| .++.+|....+++|+ +|++++|..++.+|.. +.. .|+ .|++++|.++.+|......++|
T Consensus 103 ~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L 181 (239)
T 2xwt_C 103 ELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKL 181 (239)
T ss_dssp CCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEE
T ss_pred CCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCC
Confidence 9999999999986 477788744777777 9999998556666553 332 288 8999999988888765555889
Q ss_pred cEEEeecCCCccccc-ccccCC-CCCCEEEeecCCCCccccC
Q 041551 651 QYLYIWDCSELESIS-SSIFKL-NSLESIDISNCSNLKRFLE 690 (808)
Q Consensus 651 ~~L~L~~n~~l~~lp-~~~~~l-~~L~~L~l~~c~~l~~lp~ 690 (808)
+.|+|++|+.++.+| ..+..+ ++|+.|++++|+ +..+|.
T Consensus 182 ~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~ 222 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPS 222 (239)
T ss_dssp EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCC
T ss_pred CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCCh
Confidence 999998886335664 457788 889999998864 445543
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=8.9e-16 Score=161.33 Aligned_cols=167 Identities=18% Similarity=0.269 Sum_probs=114.4
Q ss_pred CcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccccCCCCcCEEec
Q 041551 508 CAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDL 587 (808)
Q Consensus 508 ~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l 587 (808)
.+++|+.|++++|.+..++ .+..+++|++|+|++|.+.. ++.+.++++|++|++++|. +..+| .+..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKPLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCC-CcccccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEEC
Confidence 4556666667777666664 36667777777777775443 3336777777777777763 33443 3677777777777
Q ss_pred CCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccc-cccEEEecccCCeecCcccccCCcCcEEEeecCCCcccccc
Q 041551 588 DYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSC-HMWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELESISS 666 (808)
Q Consensus 588 ~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~-~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~ 666 (808)
++| .++.++....+++|+.|++++|. +..++..... .|+.|++++|.++.++. +..+++|+.|++++|.+ +.+|.
T Consensus 120 ~~n-~i~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i-~~l~~ 195 (291)
T 1h6t_A 120 EHN-GISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI-SDLRA 195 (291)
T ss_dssp TTS-CCCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CBCGG
T ss_pred CCC-cCCCChhhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC-CCChh
Confidence 775 45555544466777777777774 3334332222 27778888888888766 88899999999998877 56665
Q ss_pred cccCCCCCCEEEeecCC
Q 041551 667 SIFKLNSLESIDISNCS 683 (808)
Q Consensus 667 ~~~~l~~L~~L~l~~c~ 683 (808)
+..+++|+.|++++|+
T Consensus 196 -l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 196 -LAGLKNLDVLELFSQE 211 (291)
T ss_dssp -GTTCTTCSEEEEEEEE
T ss_pred -hccCCCCCEEECcCCc
Confidence 8889999999999884
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.65 E-value=2.2e-15 Score=154.80 Aligned_cols=171 Identities=19% Similarity=0.221 Sum_probs=140.6
Q ss_pred ceeEEEecCCCCCCc-ccCcccceEeecCCCCcccccc-hhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCC
Q 041551 491 EVRHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWD-DVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCL 567 (808)
Q Consensus 491 ~Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~ 567 (808)
..+.++++++.+..+ ...+.+|+.|+|++|.+..+++ .+.++++|++|+|++|.+....|. +.++++|++|+|++|.
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 456788888888888 4455789999999999998865 489999999999999987766665 8999999999999996
Q ss_pred CCccccccccCCCCcCEEecCCCCCCCcCCCcC--CCCCCCEEeccCCCCCCcccc-cccc--cccEEEecccCCeecCc
Q 041551 568 SLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPE-ITSC--HMWRLELTKVGIKELPS 642 (808)
Q Consensus 568 ~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~-~~~~--~L~~L~L~~n~i~~lp~ 642 (808)
.....+..+..+++|++|+|++| .++.+|... .+++|++|+|++|. +..+|. .+.. .|+.|+|++|.++.+|.
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 65545566889999999999996 677787754 78999999999995 445554 3433 39999999999998876
Q ss_pred -ccccCCcCcEEEeecCCCccc
Q 041551 643 -SIECLSNLQYLYIWDCSELES 663 (808)
Q Consensus 643 -~~~~l~~L~~L~L~~n~~l~~ 663 (808)
.+..+++|+.|+|++|++...
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHhCCCCCCEEEeeCCceeCC
Confidence 588999999999999988544
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=2.6e-17 Score=177.13 Aligned_cols=193 Identities=17% Similarity=0.309 Sum_probs=134.1
Q ss_pred CceeEEEecCCCCCCc---ccCcccceEeecCCCCccc--ccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEec
Q 041551 490 AEVRHLEWARCPLKTL---NICAEKLVSLKMPRSKVQQ--LWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWL 563 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L 563 (808)
++++.|++.+|.+... .+.+.+|++|++++|.+.. ++..+..+++|++|+|++|.+....|. ++.+++|++|+|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 5778888888776655 4567788888888888763 666678888888888888865545554 777888888888
Q ss_pred CCCCCCc--cccccccCCCCcCEEecCCCCCCCc--CCCcC-CCC-CCCEEeccCCC-CC--Ccccccccc--cccEEEe
Q 041551 564 RGCLSLV--ETHSTIQYLNKLEDLDLDYCISLTS--LPTSI-HSK-HLKELSLRGCS-NL--KIFPEITSC--HMWRLEL 632 (808)
Q Consensus 564 ~~n~~l~--~~p~~~~~l~~L~~L~l~~~~~l~~--lp~~~-~l~-~L~~L~L~~~~-~l--~~~p~~~~~--~L~~L~L 632 (808)
++|..+. .++..+.++++|++|++++|..++. ++..+ .++ +|++|++++|. .+ ..+|..... .|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 8885444 2566677888888888888745553 44434 667 88888888874 22 234443322 2888888
Q ss_pred cccC-Ce-ecCcccccCCcCcEEEeecCCCcc-cccccccCCCCCCEEEeecC
Q 041551 633 TKVG-IK-ELPSSIECLSNLQYLYIWDCSELE-SISSSIFKLNSLESIDISNC 682 (808)
Q Consensus 633 ~~n~-i~-~lp~~~~~l~~L~~L~L~~n~~l~-~lp~~~~~l~~L~~L~l~~c 682 (808)
++|. ++ ..+..+..+++|+.|++++|.... .....+.++++|+.|++++|
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 8887 54 456677788888888888875211 11124667888888888877
No 96
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.63 E-value=3e-15 Score=175.49 Aligned_cols=123 Identities=21% Similarity=0.245 Sum_probs=62.1
Q ss_pred CceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCCC-CCCCCCCcEEec
Q 041551 490 AEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWL 563 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L 563 (808)
+.+++|++++|.++.+ +..+++|++|+|++|+|+.+++. |.++++|++|+|++|.+....+. |.++++|++|+|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 4555566665555554 33455555566665555555443 55555566666655543322222 555555555555
Q ss_pred CCCCCCccccccccCCCCcCEEecCCCCCCCc--CCCcC-CCCCCCEEeccCC
Q 041551 564 RGCLSLVETHSTIQYLNKLEDLDLDYCISLTS--LPTSI-HSKHLKELSLRGC 613 (808)
Q Consensus 564 ~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~--lp~~~-~l~~L~~L~L~~~ 613 (808)
++|......+..|+++++|++|++++|. +.. +|..+ .+++|++|++++|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCc
Confidence 5553322222235555555555555542 222 23333 4455555555544
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.62 E-value=1.3e-16 Score=171.58 Aligned_cols=241 Identities=20% Similarity=0.188 Sum_probs=162.1
Q ss_pred eeEEEecCCCCCCc-ccCc--ccceEeecCCCCcccccchhhcccccceeccCCCCCCCC-CCC-CCCCCCCcEEecCCC
Q 041551 492 VRHLEWARCPLKTL-NICA--EKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTK-LPD-LSRAKNLEILWLRGC 566 (808)
Q Consensus 492 Lr~L~l~~~~l~~l-~~~~--~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~-~p~-~~~l~~L~~L~L~~n 566 (808)
++.++++++.+..- .... .+++.|++++|.+...+..+..+++|++|+|++|.+... +|. +..+++|++|+|++|
T Consensus 49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~ 128 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 128 (336)
T ss_dssp SSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred heeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc
Confidence 45666766655432 2223 788889999988887777777888999999998875443 554 778889999999988
Q ss_pred CCCccccccccCCCCcCEEecCCCCCCCc--CCCcC-CCCCCCEEeccCCCCCCc--cccccc--c-cccEEEecccC--
Q 041551 567 LSLVETHSTIQYLNKLEDLDLDYCISLTS--LPTSI-HSKHLKELSLRGCSNLKI--FPEITS--C-HMWRLELTKVG-- 636 (808)
Q Consensus 567 ~~l~~~p~~~~~l~~L~~L~l~~~~~l~~--lp~~~-~l~~L~~L~L~~~~~l~~--~p~~~~--~-~L~~L~L~~n~-- 636 (808)
......|..+..+++|++|++++|..++. +|..+ ++++|++|++++|..++. ++.... . .|+.|+|++|.
T Consensus 129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence 66656777888889999999998865653 55544 678899999998854543 343322 2 58889999884
Q ss_pred C--eecCcccccCCcCcEEEeecCC-CcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCC
Q 041551 637 I--KELPSSIECLSNLQYLYIWDCS-ELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPC 713 (808)
Q Consensus 637 i--~~lp~~~~~l~~L~~L~L~~n~-~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~ 713 (808)
+ ..+|..+..+++|+.|++++|. +....+..+..+++|++|++++|..+. +.....+-....+..+.+.+| ++.
T Consensus 209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~-i~~ 285 (336)
T 2ast_B 209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII--PETLLELGEIPTLKTLQVFGI-VPD 285 (336)
T ss_dssp SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC--GGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC--HHHHHHHhcCCCCCEEeccCc-cCH
Confidence 4 3567778888999999998888 444566678888999999999886332 111111111223455667766 332
Q ss_pred cccccccCC-Ccccccccccccccce
Q 041551 714 ETHEVFCGL-KHKSQRNLDRRSLGRI 738 (808)
Q Consensus 714 ~~~~~f~~l-~~l~~~~l~~n~~~~~ 738 (808)
..+..+ +++..+++++|.+..+
T Consensus 286 ---~~~~~l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 286 ---GTLQLLKEALPHLQINCSHFTTI 308 (336)
T ss_dssp ---TCHHHHHHHSTTSEESCCCSCCT
T ss_pred ---HHHHHHHhhCcceEEecccCccc
Confidence 122222 2344555666665543
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.61 E-value=7.1e-16 Score=177.81 Aligned_cols=167 Identities=18% Similarity=0.272 Sum_probs=92.1
Q ss_pred CcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccccCCCCcCEEec
Q 041551 508 CAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDL 587 (808)
Q Consensus 508 ~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l 587 (808)
.+.+|+.|++++|.+..++ .+..|++|+.|+|++|.+.. +|.+..+++|+.|+|++|. +..+| .+..+++|+.|+|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC-ChhhccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEe
Confidence 3445555555555555554 35555666666666654332 3335555666666666552 23333 4555566666666
Q ss_pred CCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccc-cccEEEecccCCeecCcccccCCcCcEEEeecCCCcccccc
Q 041551 588 DYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSC-HMWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELESISS 666 (808)
Q Consensus 588 ~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~-~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~ 666 (808)
++| .+..+|....+++|+.|+|++|. +..++..... .|+.|+|++|.|+.+++ +..+++|+.|+|++|.+ ..+|
T Consensus 117 s~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i-~~l~- 191 (605)
T 1m9s_A 117 EHN-GISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI-SDLR- 191 (605)
T ss_dssp TTS-CCCCCGGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CBCG-
T ss_pred cCC-CCCCCccccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC-CCCh-
Confidence 654 34444443355566666666553 2233222221 26666666666666654 66777777777777665 4444
Q ss_pred cccCCCCCCEEEeecCC
Q 041551 667 SIFKLNSLESIDISNCS 683 (808)
Q Consensus 667 ~~~~l~~L~~L~l~~c~ 683 (808)
.+..|++|+.|+|++|+
T Consensus 192 ~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGTTCTTCSEEECCSEE
T ss_pred HHccCCCCCEEEccCCc
Confidence 36667777777777664
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.61 E-value=2.1e-15 Score=171.94 Aligned_cols=170 Identities=19% Similarity=0.201 Sum_probs=145.7
Q ss_pred CCceeEEEecCCCCCCcccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCC
Q 041551 489 FAEVRHLEWARCPLKTLNICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLS 568 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~ 568 (808)
+++|++|++++|.+..+...+++|+.|+|++|.++.+|. +.+ +|++|+|++|.+.. +|. .+++|+.|+|++|.
T Consensus 79 ~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~- 151 (571)
T 3cvr_A 79 PPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQ- 151 (571)
T ss_dssp CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSC-
T ss_pred cCCCCEEECcCCCCcccccccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCc-
Confidence 478999999999999887677999999999999999988 655 99999999997655 776 78999999999995
Q ss_pred CccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccccc-------cEEEecccCCeecC
Q 041551 569 LVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCHM-------WRLELTKVGIKELP 641 (808)
Q Consensus 569 l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L-------~~L~L~~n~i~~lp 641 (808)
+..+|. .+++|++|+|++| .++.+|. +. ++|+.|+|++| .++.+|. +...| +.|+|++|.|+.+|
T Consensus 152 l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~-~~L~~L~Ls~N-~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp 223 (571)
T 3cvr_A 152 LTMLPE---LPTSLEVLSVRNN-QLTFLPE-LP-ESLEALDVSTN-LLESLPA-VPVRNHHSEETEIFFRCRENRITHIP 223 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSS-CCSCCCC-CC-TTCCEEECCSS-CCSSCCC-CC--------CCEEEECCSSCCCCCC
T ss_pred cCcCCC---cCCCcCEEECCCC-CCCCcch-hh-CCCCEEECcCC-CCCchhh-HHHhhhcccccceEEecCCCcceecC
Confidence 455776 6889999999996 5777998 55 89999999999 5667887 44467 99999999999999
Q ss_pred cccccCCcCcEEEeecCCCcccccccccCCCC
Q 041551 642 SSIECLSNLQYLYIWDCSELESISSSIFKLNS 673 (808)
Q Consensus 642 ~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~ 673 (808)
..+..+++|+.|+|++|++.+.+|..+..++.
T Consensus 224 ~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp GGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 99999999999999999998888887766543
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=1.7e-15 Score=149.40 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=92.0
Q ss_pred CcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccccCCCCcCEEec
Q 041551 508 CAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDL 587 (808)
Q Consensus 508 ~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l 587 (808)
.+++|+.|++++|.+..+| .+..+++|++|++++| ....++.+..+++|++|++++|......|..+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 3455666666666676666 5677777777777777 3445555777777777777777555556666777777777777
Q ss_pred CCCCCCCcCCCcC-CCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCcccccCCcCcEEEeecCCCcccccc
Q 041551 588 DYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELESISS 666 (808)
Q Consensus 588 ~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~ 666 (808)
++|......|..+ .+++|++|++++|..+ +.+| .+..+++|+.|++++|.+ ..++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i---------------------~~~~-~l~~l~~L~~L~l~~n~i-~~~~- 175 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAI---------------------TDIM-PLKTLPELKSLNIQFDGV-HDYR- 175 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBC---------------------CCCG-GGGGCSSCCEEECTTBCC-CCCT-
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCc---------------------cccH-hhcCCCCCCEEECCCCCC-cChH-
Confidence 7754333344433 5666666666665323 3333 355566666666666655 3344
Q ss_pred cccCCCCCCEEEeecCC
Q 041551 667 SIFKLNSLESIDISNCS 683 (808)
Q Consensus 667 ~~~~l~~L~~L~l~~c~ 683 (808)
.+..+++|+.|++++|+
T Consensus 176 ~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp TGGGCSSCCEEEECBC-
T ss_pred HhccCCCCCEEEeeCcc
Confidence 45566666666666653
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=3.8e-15 Score=156.50 Aligned_cols=166 Identities=20% Similarity=0.223 Sum_probs=141.4
Q ss_pred CCceeEEEecCCCCCCc--ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCC
Q 041551 489 FAEVRHLEWARCPLKTL--NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGC 566 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n 566 (808)
+++|+.|++++|.+..+ ...+++|+.|++++|.+..+++ +..+++|++|+|++|. +..+|.+..+++|++|++++|
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHN 122 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTS
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCC
Confidence 67899999999999888 5678999999999999999887 9999999999999997 455777999999999999999
Q ss_pred CCCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccc-cccEEEecccCCeecCcccc
Q 041551 567 LSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSC-HMWRLELTKVGIKELPSSIE 645 (808)
Q Consensus 567 ~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~-~L~~L~L~~n~i~~lp~~~~ 645 (808)
. +..+ +.+..+++|+.|++++| .++.++....+++|+.|++++|.. ..++..... .|+.|+|++|.++.+|. +.
T Consensus 123 ~-i~~~-~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~L~~N~i~~l~~-l~ 197 (291)
T 1h6t_A 123 G-ISDI-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYLSKNHISDLRA-LA 197 (291)
T ss_dssp C-CCCC-GGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCBCGG-GT
T ss_pred c-CCCC-hhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCCcc-ccchhhcCCCccCEEECCCCcCCCChh-hc
Confidence 5 4455 46889999999999996 577775544889999999999954 444442222 39999999999999975 99
Q ss_pred cCCcCcEEEeecCCCc
Q 041551 646 CLSNLQYLYIWDCSEL 661 (808)
Q Consensus 646 ~l~~L~~L~L~~n~~l 661 (808)
.+++|+.|++++|++.
T Consensus 198 ~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 198 GLKNLDVLELFSQECL 213 (291)
T ss_dssp TCTTCSEEEEEEEEEE
T ss_pred cCCCCCEEECcCCccc
Confidence 9999999999999873
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=160.37 Aligned_cols=218 Identities=15% Similarity=0.066 Sum_probs=163.5
Q ss_pred cceEeecCCCCccc--ccc--hhhcccccceeccCCCCCCCCCCC-C--CCCCCCcEEecCCCCCCcccc----ccccCC
Q 041551 511 KLVSLKMPRSKVQQ--LWD--DVQDLVNLKEIDLSRSESLTKLPD-L--SRAKNLEILWLRGCLSLVETH----STIQYL 579 (808)
Q Consensus 511 ~L~~L~L~~n~l~~--l~~--~~~~l~~L~~L~L~~n~~~~~~p~-~--~~l~~L~~L~L~~n~~l~~~p----~~~~~l 579 (808)
.++.|.+.++.+.. +.. .+..+++|++|+|++|.+.+..|. + ..+++|++|+|++|......+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 45666777666642 111 233467899999999998888886 5 899999999999997665443 345679
Q ss_pred CCcCEEecCCCCCCCcCC-CcC-CCCCCCEEeccCCCCCCc--ccccc--c--ccccEEEecccCCeecCcc----cccC
Q 041551 580 NKLEDLDLDYCISLTSLP-TSI-HSKHLKELSLRGCSNLKI--FPEIT--S--CHMWRLELTKVGIKELPSS----IECL 647 (808)
Q Consensus 580 ~~L~~L~l~~~~~l~~lp-~~~-~l~~L~~L~L~~~~~l~~--~p~~~--~--~~L~~L~L~~n~i~~lp~~----~~~l 647 (808)
++|++|+|++|. +..+| ..+ .+++|++|+|++|...+. ++... . ..|++|+|++|.++.+|.. ++.+
T Consensus 145 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 999999999975 55555 444 889999999999965432 22111 1 2399999999999877653 5788
Q ss_pred CcCcEEEeecCCCcccccccccCC---CCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCCCc
Q 041551 648 SNLQYLYIWDCSELESISSSIFKL---NSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLKH 724 (808)
Q Consensus 648 ~~L~~L~L~~n~~l~~lp~~~~~l---~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~ 724 (808)
++|+.|+|++|.+.+..|..+..+ ++|++|++++|. +..+|... . ..+..+.+.+|.+... + .+..++.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~---~--~~L~~L~Ls~N~l~~~-~-~~~~l~~ 295 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGL---P--AKLRVLDLSSNRLNRA-P-QPDELPE 295 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCC---C--SCCSCEECCSCCCCSC-C-CTTSCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhh---c--CCCCEEECCCCcCCCC-c-hhhhCCC
Confidence 999999999999877668777776 799999999985 55665532 2 2456788999998864 2 2677899
Q ss_pred ccccccccccccc
Q 041551 725 KSQRNLDRRSLGR 737 (808)
Q Consensus 725 l~~~~l~~n~~~~ 737 (808)
+..+++++|.+..
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999998753
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=2.9e-15 Score=154.93 Aligned_cols=166 Identities=18% Similarity=0.226 Sum_probs=133.9
Q ss_pred CcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccccCCCCcCEEec
Q 041551 508 CAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDL 587 (808)
Q Consensus 508 ~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l 587 (808)
.+.++..++++++.++.++ .+..+++|++|++++|. +..+|.+..+++|++|+|++|. +..+|. +..+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 3556777888888888887 67889999999999985 5567788889999999999984 555665 889999999999
Q ss_pred CCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccc-cccEEEecccCCeecCcccccCCcCcEEEeecCCCcccccc
Q 041551 588 DYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSC-HMWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELESISS 666 (808)
Q Consensus 588 ~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~-~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~ 666 (808)
++| .++.+|.... ++|+.|++++| .++.++..... .|+.|+|++|.++.+| .++.+++|+.|++++|.+.+ + .
T Consensus 93 ~~N-~l~~l~~~~~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~-~-~ 166 (263)
T 1xeu_A 93 NRN-RLKNLNGIPS-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN-T-G 166 (263)
T ss_dssp CSS-CCSCCTTCCC-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB-C-T
T ss_pred CCC-ccCCcCcccc-CcccEEEccCC-ccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc-h-H
Confidence 985 5777776556 88999999998 45555543332 2999999999999987 68999999999999998844 4 5
Q ss_pred cccCCCCCCEEEeecCC
Q 041551 667 SIFKLNSLESIDISNCS 683 (808)
Q Consensus 667 ~~~~l~~L~~L~l~~c~ 683 (808)
.+..+++|+.|++++|+
T Consensus 167 ~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TSTTCCCCCEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCc
Confidence 68899999999999985
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=5.1e-15 Score=160.10 Aligned_cols=205 Identities=16% Similarity=0.128 Sum_probs=160.0
Q ss_pred cCCCCCCCceeEEEecCCCCCCc----ccCcccceEeecCCCCcc-cccch-hhcccccce-eccCCCCCCCCCCC-CCC
Q 041551 483 FSIGVPFAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQ-QLWDD-VQDLVNLKE-IDLSRSESLTKLPD-LSR 554 (808)
Q Consensus 483 ~~~~~~~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~-~l~~~-~~~l~~L~~-L~L~~n~~~~~~p~-~~~ 554 (808)
+|.++ +++++.|++++|.++.+ +..+++|++|+|++|.+. .+|.. |.++++|.. +.+++|.+....|. |..
T Consensus 24 iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~ 102 (350)
T 4ay9_X 24 IPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN 102 (350)
T ss_dssp CCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCC
T ss_pred cCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhh
Confidence 44433 57899999999999988 457899999999999985 46554 788988776 55566665544455 899
Q ss_pred CCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC--CC-CCCCEEeccCCCCCCcccccccc--cccE
Q 041551 555 AKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI--HS-KHLKELSLRGCSNLKIFPEITSC--HMWR 629 (808)
Q Consensus 555 l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l-~~L~~L~L~~~~~l~~~p~~~~~--~L~~ 629 (808)
+++|++|++++|......+..+....++..|++.+++.+..+|... .+ ..|+.|++++|. ++.+|..... .|+.
T Consensus 103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~ 181 (350)
T 4ay9_X 103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDE 181 (350)
T ss_dssp CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEE
T ss_pred ccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhH
Confidence 9999999999995544444456677889999999888899988754 44 568999999984 5566654433 3888
Q ss_pred EEec-ccCCeecCcc-cccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCC
Q 041551 630 LELT-KVGIKELPSS-IECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIP 692 (808)
Q Consensus 630 L~L~-~n~i~~lp~~-~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~ 692 (808)
|+++ +|.++.+|.. |.++++|+.|+|++|++ ..+|. ..+.+|+.|.+.+|..++.+|.+.
T Consensus 182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l-~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPS--YGLENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp EECTTCTTCCCCCTTTTTTEECCSEEECTTSCC-CCCCS--SSCTTCCEEECTTCTTCCCCCCTT
T ss_pred HhhccCCcccCCCHHHhccCcccchhhcCCCCc-CccCh--hhhccchHhhhccCCCcCcCCCch
Confidence 9997 5789999875 79999999999999986 78876 347889999999999999998643
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.6e-14 Score=143.86 Aligned_cols=169 Identities=17% Similarity=0.201 Sum_probs=84.2
Q ss_pred EEecCCCCCCc-ccCcccceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCcc
Q 041551 495 LEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVE 571 (808)
Q Consensus 495 L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~ 571 (808)
++..++.+..+ ...+++|++|++++|.+..++.. +..+++|++|+|++|.+....+. +..+++|++|+|++|.....
T Consensus 12 v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 91 (208)
T 2o6s_A 12 VECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91 (208)
T ss_dssp EECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred EEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc
Confidence 33344444444 22334555555555555555443 45555555555555543332222 45555555555555533222
Q ss_pred ccccccCCCCcCEEecCCCCCCCcCCCcC--CCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCcc-cccCC
Q 041551 572 THSTIQYLNKLEDLDLDYCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSS-IECLS 648 (808)
Q Consensus 572 ~p~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~-~~~l~ 648 (808)
.+..+..+++|++|++++| .++.+|... .+++|++|++++ |.++.+|.. +..++
T Consensus 92 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~----------------------N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 92 PNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ----------------------NQLKSVPDGVFDRLT 148 (208)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS----------------------SCCSCCCTTTTTTCT
T ss_pred CHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC----------------------CccceeCHHHhccCC
Confidence 2222455555555555553 344444321 344555554444 445545443 55666
Q ss_pred cCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCC
Q 041551 649 NLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPS 693 (808)
Q Consensus 649 ~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~ 693 (808)
+|+.|++++|+.. +.+++|+.|+++.|..-+.+|...+
T Consensus 149 ~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 149 SLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp TCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred CccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCc
Confidence 6666666666542 2344566666666655555554433
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=1.5e-14 Score=166.87 Aligned_cols=167 Identities=21% Similarity=0.249 Sum_probs=141.9
Q ss_pred CCceeEEEecCCCCCCc--ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCC
Q 041551 489 FAEVRHLEWARCPLKTL--NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGC 566 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n 566 (808)
+++|+.|++++|.+..+ +..+++|+.|+|++|.+..+++ +..+++|+.|+|++|. +..+|.+..+++|+.|+|++|
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHN 119 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTS
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCC
Confidence 67899999999999888 6678999999999999999887 9999999999999996 456778999999999999999
Q ss_pred CCCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCccccccc-ccccEEEecccCCeecCcccc
Q 041551 567 LSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITS-CHMWRLELTKVGIKELPSSIE 645 (808)
Q Consensus 567 ~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~-~~L~~L~L~~n~i~~lp~~~~ 645 (808)
.. ..+ +.+..|++|+.|+|++| .+..++....+++|+.|+|++|......| ... ..|+.|+|++|.|+.+| .+.
T Consensus 120 ~l-~~l-~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~ 194 (605)
T 1m9s_A 120 GI-SDI-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALA 194 (605)
T ss_dssp CC-CCC-GGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGT
T ss_pred CC-CCC-ccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHc
Confidence 54 445 46899999999999996 57777554489999999999996554444 222 23999999999999986 599
Q ss_pred cCCcCcEEEeecCCCcc
Q 041551 646 CLSNLQYLYIWDCSELE 662 (808)
Q Consensus 646 ~l~~L~~L~L~~n~~l~ 662 (808)
.|++|+.|+|++|++..
T Consensus 195 ~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 195 GLKNLDVLELFSQECLN 211 (605)
T ss_dssp TCTTCSEEECCSEEEEC
T ss_pred cCCCCCEEEccCCcCcC
Confidence 99999999999998743
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.54 E-value=2.9e-14 Score=141.87 Aligned_cols=176 Identities=16% Similarity=0.128 Sum_probs=121.7
Q ss_pred eEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCccccc-cccCCCCcCEEecCCC
Q 041551 513 VSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVETHS-TIQYLNKLEDLDLDYC 590 (808)
Q Consensus 513 ~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~-~~~~l~~L~~L~l~~~ 590 (808)
+.++.+++.++.+|..+ .++|++|+|++|.+....+. +.++++|++|++++|... .+|. .+..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCC
Confidence 46777888888888655 45889999999876544444 788889999999888544 4444 4678888888888885
Q ss_pred CCCCcCCCcC--CCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCcc-cccCCcCcEEEeecCCCccccccc
Q 041551 591 ISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSS-IECLSNLQYLYIWDCSELESISSS 667 (808)
Q Consensus 591 ~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~l~~lp~~ 667 (808)
.++.+|... .+++|++|++++| .++.+|.. +..+++|+.|+|++|.+.+..+..
T Consensus 87 -~l~~~~~~~~~~l~~L~~L~L~~N----------------------~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 143 (208)
T 2o6s_A 87 -QLQSLPNGVFDKLTQLKELALNTN----------------------QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143 (208)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSS----------------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred -cCCccCHhHhcCccCCCEEEcCCC----------------------cCcccCHhHhccCCcCCEEECCCCccceeCHHH
Confidence 466666542 5666666666554 45556554 788999999999999885444445
Q ss_pred ccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCcccccccCCCc
Q 041551 668 IFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFCGLKH 724 (808)
Q Consensus 668 ~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~l~~ 724 (808)
+..+++|+.|++++|+.....|.+ ..+.+..|.+.+..|..+..++.
T Consensus 144 ~~~l~~L~~L~l~~N~~~~~~~~l----------~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNPWDCTCPGI----------RYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTCTTCCEEECCSCCBCCCTTTT----------HHHHHHHHHCTTTBBCTTSSBCT
T ss_pred hccCCCccEEEecCCCeecCCCCH----------HHHHHHHHhCCceeeccCccccC
Confidence 888999999999999755444321 22333445555555555554443
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2.2e-14 Score=141.48 Aligned_cols=153 Identities=16% Similarity=0.099 Sum_probs=108.6
Q ss_pred hhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCE
Q 041551 529 VQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKE 607 (808)
Q Consensus 529 ~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~ 607 (808)
...+++|+.|++++|.+ ..+|.+..+++|++|++++| .+..+ +.+..+++|++|++++|......|..+ .+++|++
T Consensus 40 ~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 40 EAQMNSLTYITLANINV-TDLTGIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHHTCCEEEEESSCC-SCCTTGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhhcCCccEEeccCCCc-cChHHHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 36778888999998864 46677888888999999888 44444 467888888888888865433345444 6667777
Q ss_pred EeccCCCCCCcccccccccccEEEecccCCee-cCcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCc
Q 041551 608 LSLRGCSNLKIFPEITSCHMWRLELTKVGIKE-LPSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLK 686 (808)
Q Consensus 608 L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~-lp~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 686 (808)
|++++| .++. .|..++.+++|+.|++++|..++.+| .+..+++|+.|++++|. +.
T Consensus 117 L~Ls~n----------------------~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~ 172 (197)
T 4ezg_A 117 LDISHS----------------------AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VH 172 (197)
T ss_dssp EECCSS----------------------BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CC
T ss_pred EEecCC----------------------ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-Cc
Confidence 666665 4443 56678899999999999998668887 59999999999999985 44
Q ss_pred cccCCCCCcCCCCceeeecCCCCCCC
Q 041551 687 RFLEIPSCNIDGGFAFCIVVPHCWEP 712 (808)
Q Consensus 687 ~lp~~~~~~~~~~~~~~l~l~~~~~~ 712 (808)
.++.+ .....+..+.+.+|.+.
T Consensus 173 ~~~~l----~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 173 DYRGI----EDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCTTG----GGCSSCCEEEECBC---
T ss_pred ChHHh----ccCCCCCEEEeeCcccC
Confidence 55421 11123455677777654
No 109
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.53 E-value=3.4e-14 Score=166.57 Aligned_cols=224 Identities=18% Similarity=0.126 Sum_probs=140.1
Q ss_pred CCceeEEEecCCCCCCc--ccCcccceEeecCCCCcccc---cchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEec
Q 041551 489 FAEVRHLEWARCPLKTL--NICAEKLVSLKMPRSKVQQL---WDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWL 563 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L 563 (808)
+..|+.+.+..+..... ...+++|+.|++++|.+... +..+..+.+|++|++..|......+.+..+++|+.+++
T Consensus 348 l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l 427 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDF 427 (635)
T ss_dssp CTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEEC
T ss_pred chhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhh
Confidence 55677777777766555 44567777888877776532 34456677777777777765444445777777777777
Q ss_pred CCCCCCcccc-ccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCc-cccccccc--ccEEEecccCCe
Q 041551 564 RGCLSLVETH-STIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKI-FPEITSCH--MWRLELTKVGIK 638 (808)
Q Consensus 564 ~~n~~l~~~p-~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~-~p~~~~~~--L~~L~L~~n~i~ 638 (808)
.+|......+ ..+..+++|+.+++++|......|..+ .+++|+.|++++|..... .|..+... |+.|+|++|.|+
T Consensus 428 ~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~ 507 (635)
T 4g8a_A 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507 (635)
T ss_dssp TTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred hhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC
Confidence 7765444433 346677777777777754333333333 567777787777754443 34433332 777888888777
Q ss_pred ec-CcccccCCcCcEEEeecCCCcccccccccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCCCc
Q 041551 639 EL-PSSIECLSNLQYLYIWDCSELESISSSIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEPCE 714 (808)
Q Consensus 639 ~l-p~~~~~l~~L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~~~ 714 (808)
.+ |..|+++++|+.|+|++|++.+..|..+..+++|+.|++++|......|.....+. ..+..+.+.+|...|.
T Consensus 508 ~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~--~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 508 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP--SSLAFLNLTQNDFACT 582 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCC--TTCCEEECTTCCBCCS
T ss_pred CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhh--CcCCEEEeeCCCCccc
Confidence 76 45577778888888877776544455677778888888877753222222111111 1244567777776664
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=6.5e-14 Score=141.53 Aligned_cols=147 Identities=22% Similarity=0.195 Sum_probs=100.0
Q ss_pred ceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCcccc-ccccCCCCcCEEecCC
Q 041551 512 LVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVETH-STIQYLNKLEDLDLDY 589 (808)
Q Consensus 512 L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L~l~~ 589 (808)
.+.++.+++.+..+|..+. ++|++|+|++|.+....|. +.++++|++|+|++|.. ..+| ..+..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 3456777777777776553 7788888888876666565 77888888888888754 4454 3457788888888887
Q ss_pred CCCCCcCCCcC--CCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCcccccCCcCcEEEeecCCCccccccc
Q 041551 590 CISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSSIECLSNLQYLYIWDCSELESISSS 667 (808)
Q Consensus 590 ~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~~ 667 (808)
| .++.+|... .+++|++|+|++ |.|+.+|..+..+++|+.|+|++|.+....+..
T Consensus 98 N-~l~~l~~~~~~~l~~L~~L~Ls~----------------------N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 98 N-QLTVLPSAVFDRLVHLKELFMCC----------------------NKLTELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCS----------------------SCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred C-cCCccChhHhCcchhhCeEeccC----------------------CcccccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 5 466665542 556666665555 445566777777777888888777663333344
Q ss_pred ccCCCCCCEEEeecCCC
Q 041551 668 IFKLNSLESIDISNCSN 684 (808)
Q Consensus 668 ~~~l~~L~~L~l~~c~~ 684 (808)
+..+++|+.|++++|+.
T Consensus 155 ~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTCTTCCEEECTTSCB
T ss_pred HhCCCCCCEEEeeCCCc
Confidence 67777788888777753
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=8.4e-14 Score=139.73 Aligned_cols=146 Identities=19% Similarity=0.182 Sum_probs=105.7
Q ss_pred eEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCCCC
Q 041551 513 VSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCI 591 (808)
Q Consensus 513 ~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~ 591 (808)
+.++++++.++.+|..+. ++|+.|+|++|.+....+. |..+++|++|+|++|......|..+.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence 467788888888887654 6788888888876554443 888888888888888665555777888888888888885
Q ss_pred CCCcCCCcC--CCCCCCEEeccCCCCCCcccccccccccEEEecccCCeec-CcccccCCcCcEEEeecCCCcccccccc
Q 041551 592 SLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKEL-PSSIECLSNLQYLYIWDCSELESISSSI 668 (808)
Q Consensus 592 ~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~l~~lp~~~ 668 (808)
.++.+|... ++++|++|+|++| .|+.+ |..+..+++|+.|+|++|.+.+..+..+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N----------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNAN----------------------KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS----------------------CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cCCccCHhHccCCCCCCEEECCCC----------------------CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 567777653 5677777776665 33444 4457777788888887777644444457
Q ss_pred cCCCCCCEEEeecCC
Q 041551 669 FKLNSLESIDISNCS 683 (808)
Q Consensus 669 ~~l~~L~~L~l~~c~ 683 (808)
..+++|+.|++++|+
T Consensus 149 ~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hCCCCCCEEEeCCCC
Confidence 777788888887775
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=3.3e-14 Score=154.32 Aligned_cols=166 Identities=19% Similarity=0.175 Sum_probs=89.7
Q ss_pred eEEEecCCCCCCc-ccCcccceEeecCCCCcccccch-hh-cccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCC
Q 041551 493 RHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWDD-VQ-DLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLS 568 (808)
Q Consensus 493 r~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~-~~-~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~ 568 (808)
+.++++++.+..+ ...+..++.|+|++|+++.++.. +. ++++|++|+|++|.+....|. |.++++|++|+|++|..
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 3556666666666 23344566667776666666554 43 666666666666654444443 66666666666666643
Q ss_pred CccccccccCCCCcCEEecCCCCCCCcC-CCcC-CCCCCCEEeccCCCCCCcccccc------cccccEEEecccCCeec
Q 041551 569 LVETHSTIQYLNKLEDLDLDYCISLTSL-PTSI-HSKHLKELSLRGCSNLKIFPEIT------SCHMWRLELTKVGIKEL 640 (808)
Q Consensus 569 l~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~-~l~~L~~L~L~~~~~l~~~p~~~------~~~L~~L~L~~n~i~~l 640 (808)
....+..+.++++|++|+|++|. +..+ |..+ ++++|+.|+|++|. +..+|... ...|+.|+|++|.|+.+
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 33333346666666666666643 4444 3333 55666666666653 33333322 11255555555555555
Q ss_pred Cc-ccccCCc--CcEEEeecCCC
Q 041551 641 PS-SIECLSN--LQYLYIWDCSE 660 (808)
Q Consensus 641 p~-~~~~l~~--L~~L~L~~n~~ 660 (808)
|. .+..++. |+.|+|++|++
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCE
T ss_pred CHHHhhhccHhhcceEEecCCCc
Confidence 42 2444444 24555555544
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=2.7e-14 Score=147.58 Aligned_cols=164 Identities=21% Similarity=0.192 Sum_probs=119.5
Q ss_pred ceeEEEecCCCCCCc--ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCC
Q 041551 491 EVRHLEWARCPLKTL--NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLS 568 (808)
Q Consensus 491 ~Lr~L~l~~~~l~~l--~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~ 568 (808)
++..+++.++.+..+ ...+++|+.|++++|.+..++ .+..+++|++|+|++|.+.. +|.+.++++|++|+|++|.
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~-~~~l~~l~~L~~L~L~~N~- 96 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISD-LSPLKDLTKLEELSVNRNR- 96 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSC-
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCC-ChhhccCCCCCEEECCCCc-
Confidence 444455566666655 456677888888888888876 67888888888888886444 4448888888888888874
Q ss_pred CccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccc-cccEEEecccCCeecCcccccC
Q 041551 569 LVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSC-HMWRLELTKVGIKELPSSIECL 647 (808)
Q Consensus 569 l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~-~L~~L~L~~n~i~~lp~~~~~l 647 (808)
+..+|... . ++|+.|++++| .++.+|....+++|+.|++++|. ++.+|..... .|+.|+|++|.++.+ ..+..+
T Consensus 97 l~~l~~~~-~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l 171 (263)
T 1xeu_A 97 LKNLNGIP-S-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNK-LKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRL 171 (263)
T ss_dssp CSCCTTCC-C-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSC-CCBCGGGGGCTTCCEEECTTSCCCBC-TTSTTC
T ss_pred cCCcCccc-c-CcccEEEccCC-ccCCChhhcCcccccEEECCCCc-CCCChHHccCCCCCEEECCCCcCcch-HHhccC
Confidence 44555433 3 88888888885 56667654477888888888884 4555533222 288899999999888 668999
Q ss_pred CcCcEEEeecCCCcc
Q 041551 648 SNLQYLYIWDCSELE 662 (808)
Q Consensus 648 ~~L~~L~L~~n~~l~ 662 (808)
++|+.|++++|++..
T Consensus 172 ~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 172 KKVNWIDLTGQKCVN 186 (263)
T ss_dssp CCCCEEEEEEEEEEC
T ss_pred CCCCEEeCCCCcccC
Confidence 999999999998743
No 114
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=3.4e-15 Score=163.88 Aligned_cols=225 Identities=13% Similarity=0.062 Sum_probs=154.4
Q ss_pred CCceeEEEecCCCCCCc--------ccCcccceEeecCCCCccc----ccchh-------hcccccceeccCCCCCCC--
Q 041551 489 FAEVRHLEWARCPLKTL--------NICAEKLVSLKMPRSKVQQ----LWDDV-------QDLVNLKEIDLSRSESLT-- 547 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--------~~~~~~L~~L~L~~n~l~~----l~~~~-------~~l~~L~~L~L~~n~~~~-- 547 (808)
.++|+.|++++|.+... ...+++|++|+|++|.+.. +|..+ ..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 56788999999887653 4467889999999876553 34443 678999999999997665
Q ss_pred --CCCC-CCCCCCCcEEecCCCCCCcc----ccccccCC---------CCcCEEecCCCCCC-CcCCC---cC-CCCCCC
Q 041551 548 --KLPD-LSRAKNLEILWLRGCLSLVE----THSTIQYL---------NKLEDLDLDYCISL-TSLPT---SI-HSKHLK 606 (808)
Q Consensus 548 --~~p~-~~~l~~L~~L~L~~n~~l~~----~p~~~~~l---------~~L~~L~l~~~~~l-~~lp~---~~-~l~~L~ 606 (808)
.+|. +..+++|++|+|++|..... ++..+..+ ++|++|++++|... ..+|. .+ .+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 2454 77889999999999865322 23334444 89999999987533 23442 23 568899
Q ss_pred EEeccCCCCCC-----cccccccc--cccEEEecccCC-----eecCcccccCCcCcEEEeecCCCccc----cccccc-
Q 041551 607 ELSLRGCSNLK-----IFPEITSC--HMWRLELTKVGI-----KELPSSIECLSNLQYLYIWDCSELES----ISSSIF- 669 (808)
Q Consensus 607 ~L~L~~~~~l~-----~~p~~~~~--~L~~L~L~~n~i-----~~lp~~~~~l~~L~~L~L~~n~~l~~----lp~~~~- 669 (808)
+|++++|.... .+|..... .|+.|+|++|.+ ..+|..+..+++|+.|+|++|.+... +|..+.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 99999984331 23312222 389999999998 56788888999999999999987544 566663
Q ss_pred -CCCCCCEEEeecCCCCc----cccCCCCCcCCCCceeeecCCCCCCCCcc
Q 041551 670 -KLNSLESIDISNCSNLK----RFLEIPSCNIDGGFAFCIVVPHCWEPCET 715 (808)
Q Consensus 670 -~l~~L~~L~l~~c~~l~----~lp~~~~~~~~~~~~~~l~l~~~~~~~~~ 715 (808)
.+++|+.|+|++|..-. .+|......+ ..+..+.+.+|.+....
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l--~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKM--PDLLFLELNGNRFSEED 319 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC--TTCCEEECTTSBSCTTS
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcC--CCceEEEccCCcCCcch
Confidence 48999999999986332 1544221111 23456778888877554
No 115
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.50 E-value=5.6e-13 Score=143.96 Aligned_cols=261 Identities=13% Similarity=0.092 Sum_probs=149.7
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhh--hccCHHHHHHHHHhhHhc------------------C
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAE--ETGGIKDLQKELLSDVLN------------------D 227 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~--~~~~~~~l~~~ll~~~~~------------------~ 227 (808)
+++.|+|++|+|||||+++++++.. .+|+....... .......+...+...+.. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 106 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTL 106 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceee
Confidence 5799999999999999999998752 56665322110 011233333333222110 0
Q ss_pred c-cc----ccHHHHHHHHcc-ceEEEEEecCCCHH--------H-HHHHHhccCCCCCCCEEEEEeCchhhhhhc-----
Q 041551 228 R-IL----RDVRSQLNRLAR-KMVLLVFDDVNNPR--------Q-IESLIGHLDHLASGSRVIITTRDKQVLKNC----- 287 (808)
Q Consensus 228 ~-~~----~~~~~l~~~L~~-~~~LlVlDdv~~~~--------~-~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~----- 287 (808)
. .. +..+.+.+.... ++++|||||++... . +..+...... .++.++|+|++...+....
T Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~ 185 (350)
T 2qen_A 107 EPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITD 185 (350)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTC
T ss_pred ccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcC
Confidence 0 01 222233333332 48999999997632 2 3333222111 2478899999876532211
Q ss_pred -------CCCeEEEecCCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhhcC-CCHHHHHHHHh
Q 041551 288 -------WAGQIYQMKELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYLCG-RSKEEWESAMR 359 (808)
Q Consensus 288 -------~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~-~~~~~w~~~l~ 359 (808)
.....+++.+|+.+|+.+++.......... ...+.+.++++.++|+|+++..++..+.. .+...+. .
T Consensus 186 ~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~---~ 260 (350)
T 2qen_A 186 YESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAM---K 260 (350)
T ss_dssp TTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHH---H
T ss_pred CCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHH---H
Confidence 112478999999999999998754211111 22456789999999999999998875431 2222221 1
Q ss_pred hhhcCcchhHHHHHHHhhcCC---cHHHHHHHhhhhhccCCcchhHHHHHHhhc--CCc---chhhhhhhhcccceeeec
Q 041551 360 KLEIIPHVEIQEVLKISYDSL---DDSQKNIFLDIACFLEGEHRDKVISFFDAS--GLE---AKIELSVLEGKSLINLDV 431 (808)
Q Consensus 360 ~l~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~la~fp~~~~~~~l~~~~~~~--g~~---~~~~l~~L~~~sLi~~~~ 431 (808)
.+. +.+...+.-.+..+ ++..+.++..+|+ .......+....... +.. ....++.|++.+||...
T Consensus 261 ~~~----~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~- 333 (350)
T 2qen_A 261 RTL----EVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE- 333 (350)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-
T ss_pred HHH----HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-
Confidence 111 01111111112222 7888999999998 233445555444221 222 23558999999999876
Q ss_pred CCeEEe-cHHHHHHHH
Q 041551 432 FDQIRM-HDLLRDMGR 446 (808)
Q Consensus 432 ~~~~~m-Hdlv~~~~~ 446 (808)
.+.|++ |++++++.+
T Consensus 334 ~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 334 DNTYKIADPVVATVLR 349 (350)
T ss_dssp TTEEEESSHHHHHHHT
T ss_pred CCEEEEecHHHHHHHc
Confidence 466765 788887653
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=3.9e-15 Score=163.44 Aligned_cols=231 Identities=11% Similarity=0.089 Sum_probs=162.9
Q ss_pred cCcccceEeecCCCCccc-----ccchhhcccccceeccCCCCCC---CCCCC-C-------CCCCCCcEEecCCCCCCc
Q 041551 507 ICAEKLVSLKMPRSKVQQ-----LWDDVQDLVNLKEIDLSRSESL---TKLPD-L-------SRAKNLEILWLRGCLSLV 570 (808)
Q Consensus 507 ~~~~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~L~~n~~~---~~~p~-~-------~~l~~L~~L~L~~n~~l~ 570 (808)
..+++|++|+|++|.+.. ++..+..+++|++|+|++|... ..+|. + ..+++|++|+|++|....
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 456789999999998874 3344778999999999997432 23342 3 688999999999986555
Q ss_pred ----cccccccCCCCcCEEecCCCCCCCc-----CCCcC-CC---------CCCCEEeccCCCCC-Cccccc---cc--c
Q 041551 571 ----ETHSTIQYLNKLEDLDLDYCISLTS-----LPTSI-HS---------KHLKELSLRGCSNL-KIFPEI---TS--C 625 (808)
Q Consensus 571 ----~~p~~~~~l~~L~~L~l~~~~~l~~-----lp~~~-~l---------~~L~~L~L~~~~~l-~~~p~~---~~--~ 625 (808)
.+|..+..+++|++|+|++|. ++. ++..+ .+ ++|++|++++|... ..+|.. +. .
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 377788899999999999975 332 22211 23 79999999998644 344421 11 2
Q ss_pred cccEEEecccCCe------ecCcccccCCcCcEEEeecCCCc----ccccccccCCCCCCEEEeecCCCCcc----ccCC
Q 041551 626 HMWRLELTKVGIK------ELPSSIECLSNLQYLYIWDCSEL----ESISSSIFKLNSLESIDISNCSNLKR----FLEI 691 (808)
Q Consensus 626 ~L~~L~L~~n~i~------~lp~~~~~l~~L~~L~L~~n~~l----~~lp~~~~~l~~L~~L~l~~c~~l~~----lp~~ 691 (808)
.|+.|+|++|.++ -+|..+..+++|+.|+|++|.+. ..+|..+..+++|+.|+|++|..-.. +|..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 3999999999988 24547889999999999999874 66788888999999999999863222 2221
Q ss_pred CCCcCCCCceeeecCCCCCCCC----cccccc-cCCCccccccccccccccee
Q 041551 692 PSCNIDGGFAFCIVVPHCWEPC----ETHEVF-CGLKHKSQRNLDRRSLGRIS 739 (808)
Q Consensus 692 ~~~~~~~~~~~~l~l~~~~~~~----~~~~~f-~~l~~l~~~~l~~n~~~~~~ 739 (808)
... -....+..+.+.+|.+.. ..+..+ ..++++..+++++|.+....
T Consensus 268 l~~-~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 268 FSK-LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHT-CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred Hhh-ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 000 001234567888888876 244444 56788999999998877544
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=138.84 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=94.2
Q ss_pred eEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC--CCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCCC
Q 041551 513 VSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD--LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYC 590 (808)
Q Consensus 513 ~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~ 590 (808)
+.+++++|.++.+|..+. ..+++|+|++|.+....|. |..+++|++|+|++|......+..+.++++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 366777777777776543 3456777777765544342 667777777777777544333446777777777777774
Q ss_pred CCCCcCCCc-C-CCCCCCEEeccCCCCCCcccccccccccEEEecccCCeec-CcccccCCcCcEEEeecCCCccccccc
Q 041551 591 ISLTSLPTS-I-HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKEL-PSSIECLSNLQYLYIWDCSELESISSS 667 (808)
Q Consensus 591 ~~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~l~~lp~~ 667 (808)
.++.+|.. + ++++|++|+|++| .|+.+ |..+..+++|+.|+|++|.+.+..|..
T Consensus 92 -~l~~~~~~~~~~l~~L~~L~Ls~N----------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 92 -RLENVQHKMFKGLESLKTLMLRSN----------------------RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp -CCCCCCGGGGTTCSSCCEEECTTS----------------------CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred -ccCccCHhHhcCCcCCCEEECCCC----------------------cCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence 34555543 2 5566666555554 44444 455777777888888777775555667
Q ss_pred ccCCCCCCEEEeecCC
Q 041551 668 IFKLNSLESIDISNCS 683 (808)
Q Consensus 668 ~~~l~~L~~L~l~~c~ 683 (808)
+..+++|+.|++++|+
T Consensus 149 ~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 149 FDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTTCTTCCEEECCSCC
T ss_pred hcCCCCCCEEEecCcC
Confidence 7777888888887775
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=3e-13 Score=135.64 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=117.8
Q ss_pred eEEEecCCCCCCc-ccCcccceEeecCCCCcccccc--hhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCC
Q 041551 493 RHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWD--DVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLS 568 (808)
Q Consensus 493 r~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~ 568 (808)
+.++++++.+..+ ...+..+++|+|++|.++.+++ .+..+++|++|+|++|.+....+. |.++++|++|+|++|..
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 4688888888888 3446678999999999998853 389999999999999986665564 99999999999999976
Q ss_pred CccccccccCCCCcCEEecCCCCCCCcC-CCcC-CCCCCCEEeccCCCCCCcccccccccccEEEecccCCeec-Ccccc
Q 041551 569 LVETHSTIQYLNKLEDLDLDYCISLTSL-PTSI-HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKEL-PSSIE 645 (808)
Q Consensus 569 l~~~p~~~~~l~~L~~L~l~~~~~l~~l-p~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~l-p~~~~ 645 (808)
....+..+..+++|++|+|++|. ++.+ |..+ .+++|++|+|++| .|+.+ |..+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N----------------------~l~~~~~~~~~ 150 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN----------------------QITTVAPGAFD 150 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTS----------------------CCCCBCTTTTT
T ss_pred CccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCC----------------------cCCEECHHHhc
Confidence 65556669999999999999965 5555 4444 6777777777665 44555 66788
Q ss_pred cCCcCcEEEeecCCCccc
Q 041551 646 CLSNLQYLYIWDCSELES 663 (808)
Q Consensus 646 ~l~~L~~L~L~~n~~l~~ 663 (808)
.+++|+.|+|++|++...
T Consensus 151 ~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 151 TLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TCTTCCEEECCSCCEECS
T ss_pred CCCCCCEEEecCcCCcCC
Confidence 899999999999987543
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=1.7e-13 Score=148.80 Aligned_cols=166 Identities=17% Similarity=0.146 Sum_probs=80.8
Q ss_pred EeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CC-CCCCCcEEecCCCCCCccccccccCCCCcCEEecCCCC
Q 041551 514 SLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LS-RAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCI 591 (808)
Q Consensus 514 ~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~-~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~ 591 (808)
.+++++++++.+|..+. ..++.|+|++|.+....+. +. ++++|+.|+|++|......+..+.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N- 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN- 98 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-
Confidence 45555555555554432 2355555555544333333 43 5555555555555333323334555555556655553
Q ss_pred CCCcCCCc-C-CCCCCCEEeccCCCCCCccccccccc--ccEEEecccCCeecCccc----ccCCcCcEEEeecCCCccc
Q 041551 592 SLTSLPTS-I-HSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIKELPSSI----ECLSNLQYLYIWDCSELES 663 (808)
Q Consensus 592 ~l~~lp~~-~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~~lp~~~----~~l~~L~~L~L~~n~~l~~ 663 (808)
.++.+|.. + ++++|+.|+|++|......|..+..+ |+.|+|++|.|+.+|..+ ..+++|+.|+|++|.+ ..
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l-~~ 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KK 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC-CC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC-Cc
Confidence 34444432 2 45555555555554333223333322 555555555555555543 3455555555555554 23
Q ss_pred cc-ccccCCCC--CCEEEeecCC
Q 041551 664 IS-SSIFKLNS--LESIDISNCS 683 (808)
Q Consensus 664 lp-~~~~~l~~--L~~L~l~~c~ 683 (808)
+| ..+..++. |+.|+|++|+
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCHHHhhhccHhhcceEEecCCC
Confidence 33 23444444 2555555544
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=1.3e-15 Score=174.47 Aligned_cols=179 Identities=17% Similarity=0.158 Sum_probs=138.5
Q ss_pred cCcccceEeecCCCCcccccchhhcccccceeccCCCC-------------CCCCCCC-CCCCCCCcEEe-cCCCCCCcc
Q 041551 507 ICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSE-------------SLTKLPD-LSRAKNLEILW-LRGCLSLVE 571 (808)
Q Consensus 507 ~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~-------------~~~~~p~-~~~l~~L~~L~-L~~n~~l~~ 571 (808)
...++|+.|+|++|.++.+|..+++|++|+.|++++|. ..+.+|. ++.+++|+.|+ ++.| .+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccch
Confidence 45788999999999999999999999999999997774 3444454 77888888888 5544 2222
Q ss_pred ccc------cccC--CCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCccccccccc--ccEEEecccCCeecC
Q 041551 572 THS------TIQY--LNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVGIKELP 641 (808)
Q Consensus 572 ~p~------~~~~--l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~i~~lp 641 (808)
++. .+.. ...|+.|+|++| .++.+|....+++|+.|+|++|. +..+|..+..+ |+.|+|++|.|+.+|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp 502 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG
T ss_pred hhhhhhhcccccccCccCceEEEecCC-CCCCCcCccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc
Confidence 211 1111 125899999995 67788874488999999999984 55788766654 999999999999998
Q ss_pred cccccCCcCcEEEeecCCCcccc-cccccCCCCCCEEEeecCCCCccccC
Q 041551 642 SSIECLSNLQYLYIWDCSELESI-SSSIFKLNSLESIDISNCSNLKRFLE 690 (808)
Q Consensus 642 ~~~~~l~~L~~L~L~~n~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~ 690 (808)
.++++++|+.|+|++|.+.+.. |..++.+++|+.|++++|+ +..+|.
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~ 550 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEG 550 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSS
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCcc
Confidence 7999999999999999885554 8889999999999999985 444443
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=5.7e-13 Score=133.62 Aligned_cols=145 Identities=17% Similarity=0.210 Sum_probs=113.3
Q ss_pred eEEEecCCCCCCc-ccCcccceEeecCCCCcccccc-hhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCC
Q 041551 493 RHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWD-DVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSL 569 (808)
Q Consensus 493 r~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l 569 (808)
+.++..++.++.+ ...+++|+.|+|++|.++.++. .+..+++|++|+|++|.+....|. |.++++|++|+|++|..
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l- 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI- 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC-
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC-
Confidence 4577778888777 3345789999999999998876 589999999999999987766675 99999999999999954
Q ss_pred cccccc-ccCCCCcCEEecCCCCCCCcCCC-cC-CCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCc-ccc
Q 041551 570 VETHST-IQYLNKLEDLDLDYCISLTSLPT-SI-HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPS-SIE 645 (808)
Q Consensus 570 ~~~p~~-~~~l~~L~~L~l~~~~~l~~lp~-~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~-~~~ 645 (808)
..+|.. +..+++|++|+|++| .++.++. .+ .+++|++|+|++| .|+.+|. .+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N----------------------~l~~~~~~~~~ 149 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN----------------------KLQTIAKGTFS 149 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS----------------------CCSCCCTTTTT
T ss_pred CccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC----------------------cCCEECHHHHh
Confidence 456554 688999999999996 4666643 44 6677777777665 4455544 477
Q ss_pred cCCcCcEEEeecCCCc
Q 041551 646 CLSNLQYLYIWDCSEL 661 (808)
Q Consensus 646 ~l~~L~~L~L~~n~~l 661 (808)
.+++|+.|+|++|++.
T Consensus 150 ~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred CCCCCCEEEeCCCCcC
Confidence 8889999999988763
No 122
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.45 E-value=2.4e-12 Score=139.32 Aligned_cols=263 Identities=13% Similarity=0.108 Sum_probs=150.3
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhh-hhccCHHHHHHHHHhhH-------------hcC------
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREA-EETGGIKDLQKELLSDV-------------LND------ 227 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~-~~~~~~~~l~~~ll~~~-------------~~~------ 227 (808)
+++.|+|++|+|||||+++++++... ..+|+...... ........+...+...+ ...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~ 107 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNL---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVI 107 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEe
Confidence 58999999999999999999987653 24666532210 00011122222211111 000
Q ss_pred -----c------ccccHHHHHHHHcc---ceEEEEEecCCCHH-----HHHHHHhccCCCCCCCEEEEEeCchhhhhh--
Q 041551 228 -----R------ILRDVRSQLNRLAR---KMVLLVFDDVNNPR-----QIESLIGHLDHLASGSRVIITTRDKQVLKN-- 286 (808)
Q Consensus 228 -----~------~~~~~~~l~~~L~~---~~~LlVlDdv~~~~-----~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~-- 286 (808)
. .......+.+.+.. ++++|||||++... ++..++..+.....+.++|+|+|.......
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l 187 (357)
T 2fna_A 108 MGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYL 187 (357)
T ss_dssp CSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHT
T ss_pred cceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHH
Confidence 0 01234445555532 48999999997532 222222222111246789999998654221
Q ss_pred --------c-CC-CeEEEecCCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhhc-CCCHHHHH
Q 041551 287 --------C-WA-GQIYQMKELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYLC-GRSKEEWE 355 (808)
Q Consensus 287 --------~-~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~-~~~~~~w~ 355 (808)
. +. ...+++.+|+.+|+.+++...+.......... .+|++.++|+|+++..++..+. ..+...|.
T Consensus 188 ~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~ 263 (357)
T 2fna_A 188 RVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAI 263 (357)
T ss_dssp TTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred hccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHH
Confidence 1 11 25789999999999999987542111112221 7899999999999999887654 22333332
Q ss_pred HH-HhhhhcCcchhHHHHHH-Hhhc--CCcHHHHHHHhhhhhccCCcchhHHHHHHh-hcC--C---cchhhhhhhhccc
Q 041551 356 SA-MRKLEIIPHVEIQEVLK-ISYD--SLDDSQKNIFLDIACFLEGEHRDKVISFFD-ASG--L---EAKIELSVLEGKS 425 (808)
Q Consensus 356 ~~-l~~l~~~~~~~i~~~l~-~sy~--~L~~~~k~~fl~la~fp~~~~~~~l~~~~~-~~g--~---~~~~~l~~L~~~s 425 (808)
.. .+.. ...+...+. +.++ .|++..+.++..+|+ . . ....+..... ..| . .....++.|++.+
T Consensus 264 ~~~~~~~----~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~g 336 (357)
T 2fna_A 264 NQTLEYA----KKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHS 336 (357)
T ss_dssp HHHHHHH----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHH----HHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 21 1111 011111222 2221 688899999999998 2 2 4444443321 123 2 2245689999999
Q ss_pred ceeeecCCeEE-ecHHHHHHH
Q 041551 426 LINLDVFDQIR-MHDLLRDMG 445 (808)
Q Consensus 426 Li~~~~~~~~~-mHdlv~~~~ 445 (808)
||.... +.|+ .|++++++.
T Consensus 337 li~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 337 WIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp SEEESS-SCEEESSHHHHHHT
T ss_pred CEEecC-CEEEecCHHHHHhh
Confidence 998763 5677 578888764
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=8.6e-13 Score=133.24 Aligned_cols=149 Identities=20% Similarity=0.199 Sum_probs=114.9
Q ss_pred eeEEEecCCCCCCc-ccCcccceEeecCCCCcccc-cchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCC
Q 041551 492 VRHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQL-WDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLS 568 (808)
Q Consensus 492 Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~ 568 (808)
.+.++.+++.+..+ ...+.+|++|+|++|.+..+ |..+..+++|++|+|++|.+....+. |..+++|++|+|++|..
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 34577777777777 44568899999999999987 45689999999999999986444334 78999999999999955
Q ss_pred CccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCc-cccc
Q 041551 569 LVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPS-SIEC 646 (808)
Q Consensus 569 l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~-~~~~ 646 (808)
....+..+..+++|++|+|++| .++.+|..+ .+++|++|+|++| .|+.+|. .+..
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N----------------------~l~~~~~~~~~~ 157 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN----------------------QLKSIPHGAFDR 157 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS----------------------CCCCCCTTTTTT
T ss_pred CccChhHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC----------------------cCCccCHHHHhC
Confidence 4433445789999999999995 577888776 6777777777665 4445543 4778
Q ss_pred CCcCcEEEeecCCCccc
Q 041551 647 LSNLQYLYIWDCSELES 663 (808)
Q Consensus 647 l~~L~~L~L~~n~~l~~ 663 (808)
+++|+.|+|++|++...
T Consensus 158 l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CTTCCEEECTTSCBCTT
T ss_pred CCCCCEEEeeCCCccCC
Confidence 88999999988887543
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=2.7e-14 Score=155.11 Aligned_cols=194 Identities=15% Similarity=0.068 Sum_probs=126.7
Q ss_pred CCceeEEEecCCCCCCcc--------cCcc-cceEeecCCCCcccc-cchhhcc-----cccceeccCCCCCCCCCCC--
Q 041551 489 FAEVRHLEWARCPLKTLN--------ICAE-KLVSLKMPRSKVQQL-WDDVQDL-----VNLKEIDLSRSESLTKLPD-- 551 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l~--------~~~~-~L~~L~L~~n~l~~l-~~~~~~l-----~~L~~L~L~~n~~~~~~p~-- 551 (808)
+++|++|++++|.+.... ..++ +|++|+|++|.+... +..+..+ ++|++|+|++|.+....+.
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 456888888888876652 2344 788888888888765 4445554 8888888888876555443
Q ss_pred ---CCCC-CCCcEEecCCCCCCcccccc----ccC-CCCcCEEecCCCCCCCc-----CCCcC-CCC-CCCEEeccCCCC
Q 041551 552 ---LSRA-KNLEILWLRGCLSLVETHST----IQY-LNKLEDLDLDYCISLTS-----LPTSI-HSK-HLKELSLRGCSN 615 (808)
Q Consensus 552 ---~~~l-~~L~~L~L~~n~~l~~~p~~----~~~-l~~L~~L~l~~~~~l~~-----lp~~~-~l~-~L~~L~L~~~~~ 615 (808)
+..+ ++|++|+|++|......+.. +.. .++|++|+|++|. ++. ++..+ .++ +|++|+|++|..
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 3344 78888888888544333322 333 3588888888864 442 22222 343 788888888854
Q ss_pred CCccccccc-------ccccEEEecccCCee-----cCcccccC-CcCcEEEeecCCCcccc----cccccCCCCCCEEE
Q 041551 616 LKIFPEITS-------CHMWRLELTKVGIKE-----LPSSIECL-SNLQYLYIWDCSELESI----SSSIFKLNSLESID 678 (808)
Q Consensus 616 l~~~p~~~~-------~~L~~L~L~~n~i~~-----lp~~~~~l-~~L~~L~L~~n~~l~~l----p~~~~~l~~L~~L~ 678 (808)
....+.... ..|+.|+|++|.|+. ++..+..+ ++|+.|+|++|.+...- ...+..+++|+.|+
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~ 259 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVY 259 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEE
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 333322111 248888888888876 66666664 48888888888764322 23346678888888
Q ss_pred eecCC
Q 041551 679 ISNCS 683 (808)
Q Consensus 679 l~~c~ 683 (808)
+++|.
T Consensus 260 L~~n~ 264 (362)
T 3goz_A 260 LDYDI 264 (362)
T ss_dssp EEHHH
T ss_pred eccCC
Confidence 88874
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=1.5e-14 Score=157.22 Aligned_cols=243 Identities=12% Similarity=0.058 Sum_probs=168.4
Q ss_pred EEEecCCCCCCc----ccCcccceEeecCCCCccccc-----chhhccc-ccceeccCCCCCCCCCCC-CCCC-----CC
Q 041551 494 HLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLW-----DDVQDLV-NLKEIDLSRSESLTKLPD-LSRA-----KN 557 (808)
Q Consensus 494 ~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~-----~~~~~l~-~L~~L~L~~n~~~~~~p~-~~~l-----~~ 557 (808)
+++++.+.+... ...+++|++|+|++|.+...+ ..+..++ +|++|+|++|.+....+. +..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 356677777655 445667999999999999876 4578888 999999999986665553 5553 99
Q ss_pred CcEEecCCCCCCcccccc----ccCC-CCcCEEecCCCCCCCcCCCcC------C-CCCCCEEeccCCCCCC----cccc
Q 041551 558 LEILWLRGCLSLVETHST----IQYL-NKLEDLDLDYCISLTSLPTSI------H-SKHLKELSLRGCSNLK----IFPE 621 (808)
Q Consensus 558 L~~L~L~~n~~l~~~p~~----~~~l-~~L~~L~l~~~~~l~~lp~~~------~-l~~L~~L~L~~~~~l~----~~p~ 621 (808)
|++|+|++|......+.. +..+ ++|++|+|++|. ++..+... . .++|++|+|++|.... .++.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 999999999655444443 4455 899999999975 66655421 2 3699999999995432 2222
Q ss_pred ccc---ccccEEEecccCCeecCc-----ccccC-CcCcEEEeecCCCcc----cccccccC-CCCCCEEEeecCCCCcc
Q 041551 622 ITS---CHMWRLELTKVGIKELPS-----SIECL-SNLQYLYIWDCSELE----SISSSIFK-LNSLESIDISNCSNLKR 687 (808)
Q Consensus 622 ~~~---~~L~~L~L~~n~i~~lp~-----~~~~l-~~L~~L~L~~n~~l~----~lp~~~~~-l~~L~~L~l~~c~~l~~ 687 (808)
... ..|+.|+|++|.++..+. .+..+ ++|+.|+|++|.+.. .++..+.. .++|++|++++|. +..
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~ 239 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHG 239 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCc
Confidence 222 259999999999986543 34556 599999999998743 26666666 4599999999985 333
Q ss_pred ccC--CCCCcCCCCceeeecCCCCCCCCc-------ccccccCCCcccccccccccccce
Q 041551 688 FLE--IPSCNIDGGFAFCIVVPHCWEPCE-------THEVFCGLKHKSQRNLDRRSLGRI 738 (808)
Q Consensus 688 lp~--~~~~~~~~~~~~~l~l~~~~~~~~-------~~~~f~~l~~l~~~~l~~n~~~~~ 738 (808)
.+. +....-....+..+.+.+|.+... ....+..++++..+++++|.+...
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 211 000001112345567777763332 233677889999999999987755
No 126
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.43 E-value=3e-15 Score=168.45 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=16.9
Q ss_pred cceEeecCCCCcc-----cccchhhcccccceeccCCCC
Q 041551 511 KLVSLKMPRSKVQ-----QLWDDVQDLVNLKEIDLSRSE 544 (808)
Q Consensus 511 ~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~L~~n~ 544 (808)
+|++|+|++|.+. .++..+..+++|++|+|++|.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 4555555555544 234444555555555555554
No 127
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.43 E-value=7e-15 Score=165.45 Aligned_cols=245 Identities=15% Similarity=0.175 Sum_probs=139.8
Q ss_pred CCceeEEEecCCCCCCc--------ccCcccceEeecCCCCcccc-cch-hhccc----ccceeccCCCCCCC----CCC
Q 041551 489 FAEVRHLEWARCPLKTL--------NICAEKLVSLKMPRSKVQQL-WDD-VQDLV----NLKEIDLSRSESLT----KLP 550 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--------~~~~~~L~~L~L~~n~l~~l-~~~-~~~l~----~L~~L~L~~n~~~~----~~p 550 (808)
+++|++|++++|.+... ...+++|++|+|++|.+... +.. ...++ +|++|+|++|.+.. .+|
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 45677777777776632 33456777777777776642 222 23344 57777777776442 234
Q ss_pred C-CCCCCCCcEEecCCCCCCcccccc-----ccCCCCcCEEecCCCCCCCc-----CCCcC-CCCCCCEEeccCCCCCCc
Q 041551 551 D-LSRAKNLEILWLRGCLSLVETHST-----IQYLNKLEDLDLDYCISLTS-----LPTSI-HSKHLKELSLRGCSNLKI 618 (808)
Q Consensus 551 ~-~~~l~~L~~L~L~~n~~l~~~p~~-----~~~l~~L~~L~l~~~~~l~~-----lp~~~-~l~~L~~L~L~~~~~l~~ 618 (808)
. +..+++|++|+|++|......+.. ....++|++|++++|. ++. ++..+ .+++|++|++++|.....
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 3 667777777777777533222222 1234567777777764 332 22222 457778888877752221
Q ss_pred ccccc-------cccccEEEecccCCee-----cCcccccCCcCcEEEeecCCCccc----c-cccccCCCCCCEEEeec
Q 041551 619 FPEIT-------SCHMWRLELTKVGIKE-----LPSSIECLSNLQYLYIWDCSELES----I-SSSIFKLNSLESIDISN 681 (808)
Q Consensus 619 ~p~~~-------~~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~L~~n~~l~~----l-p~~~~~l~~L~~L~l~~ 681 (808)
.+... ...|+.|++++|.++. +|..+..+++|+.|++++|.+... + +..+..+++|++|++++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 11111 1247788888887774 566677778888888887765322 1 22233577888888888
Q ss_pred CCCCcc-----ccCCCCCcCCCCceeeecCCCCCCCCccccccc-----CCCcccccccccccccce
Q 041551 682 CSNLKR-----FLEIPSCNIDGGFAFCIVVPHCWEPCETHEVFC-----GLKHKSQRNLDRRSLGRI 738 (808)
Q Consensus 682 c~~l~~-----lp~~~~~~~~~~~~~~l~l~~~~~~~~~~~~f~-----~l~~l~~~~l~~n~~~~~ 738 (808)
|. +.. +|.... ....+..+.+.+|.+.......++ ..+.+..+++++|.+...
T Consensus 266 n~-l~~~~~~~l~~~l~---~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 266 CG-ITAKGCGDLCRVLR---AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp SC-CCHHHHHHHHHHHH---HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred CC-CCHHHHHHHHHHHh---hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 73 433 332111 011344567777766543222222 235777888888876644
No 128
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.42 E-value=3.3e-12 Score=141.29 Aligned_cols=253 Identities=13% Similarity=0.090 Sum_probs=146.6
Q ss_pred eEEEE--eecCCCcHhHHHHHHHHHhhcc-----cCc-eEEEecchhhhhccCHHHHHHHHHhhHhcCcc------cccH
Q 041551 168 ISIWI--WGIGGIGKTTIADAVFNKISRH-----FEG-SYFAQNVREAEETGGIKDLQKELLSDVLNDRI------LRDV 233 (808)
Q Consensus 168 ~vi~I--~G~gGiGKTtLA~~~~~~~~~~-----F~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~------~~~~ 233 (808)
+.+.| +|++|+||||||++++++.... +.. .+|+.. ........+...++..+..... .+..
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 126 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA----FNAPNLYTILSLIVRQTGYPIQVRGAPALDIL 126 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG----GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEEC----CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence 44555 9999999999999999976553 222 455552 2234556666666665532211 1334
Q ss_pred HHHHHHHc--cceEEEEEecCCCH--------HHHHHHHhccCCC---C--CCCEEEEEeCchhhhhhc---------CC
Q 041551 234 RSQLNRLA--RKMVLLVFDDVNNP--------RQIESLIGHLDHL---A--SGSRVIITTRDKQVLKNC---------WA 289 (808)
Q Consensus 234 ~~l~~~L~--~~~~LlVlDdv~~~--------~~~~~l~~~l~~~---~--~gs~IiiTTR~~~v~~~~---------~~ 289 (808)
..+.+.+. +++++|||||++.. +.+..+...+... + .+..+|+||+..++.... ..
T Consensus 127 ~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~ 206 (412)
T 1w5s_A 127 KALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQI 206 (412)
T ss_dssp HHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTC
T ss_pred HHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhc
Confidence 55555554 67999999999763 3344443333211 2 344578788766533111 11
Q ss_pred CeEEEecCCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc------CchhhHHHHhhhh------cC---CCHHHH
Q 041551 290 GQIYQMKELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQ------GVPLALKVLGCYL------CG---RSKEEW 354 (808)
Q Consensus 290 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~------glPLal~~~~~~L------~~---~~~~~w 354 (808)
...+.+++|+.+++.++|..++...........+.+..+++.++ |.|..+..+.... .+ .+.+.+
T Consensus 207 ~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v 286 (412)
T 1w5s_A 207 GFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLV 286 (412)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHH
T ss_pred CCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 23489999999999999976642111111223567788999999 9997655444321 11 123344
Q ss_pred HHHHhhhhcCcchhHHHHHHHhhcCCcHHHHHHHhhhhhccC----CcchhHHHH----HH-hhcCCc------chhhhh
Q 041551 355 ESAMRKLEIIPHVEIQEVLKISYDSLDDSQKNIFLDIACFLE----GEHRDKVIS----FF-DASGLE------AKIELS 419 (808)
Q Consensus 355 ~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~fp~----~~~~~~l~~----~~-~~~g~~------~~~~l~ 419 (808)
..++..... ...+.-.+..||+..+.++..+|.+.. ......+.. +. ...|.. ....++
T Consensus 287 ~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 360 (412)
T 1w5s_A 287 RKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLK 360 (412)
T ss_dssp HHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHH
T ss_pred HHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 433332210 233445678899999999999997642 122333222 22 222321 134588
Q ss_pred hhhcccceeee
Q 041551 420 VLEGKSLINLD 430 (808)
Q Consensus 420 ~L~~~sLi~~~ 430 (808)
.|++.+||...
T Consensus 361 ~L~~~gli~~~ 371 (412)
T 1w5s_A 361 HLTSLGLVDAK 371 (412)
T ss_dssp HHHHTTSEEEE
T ss_pred HHHhCCCEEee
Confidence 99999999765
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.39 E-value=8.4e-14 Score=164.64 Aligned_cols=184 Identities=18% Similarity=0.117 Sum_probs=95.0
Q ss_pred CCceeEEEecCCCCCCcc---cCc-----ccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCC-CCCCCCCCc
Q 041551 489 FAEVRHLEWARCPLKTLN---ICA-----EKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLP-DLSRAKNLE 559 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l~---~~~-----~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p-~~~~l~~L~ 559 (808)
.+.++.|++.++.+.... ... .++..+++..|.+...+..+..+++|+.|+|++|.+. .+| .+.++++|+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence 455777777777655541 111 1222333444444444556788888888888888754 555 466888888
Q ss_pred EEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccccccccc--ccEEEecccC
Q 041551 560 ILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCH--MWRLELTKVG 636 (808)
Q Consensus 560 ~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~--L~~L~L~~n~ 636 (808)
+|+|++|. +..+|..+++|++|++|+|++|. ++.+|..+ .+++|++|+|++| .++.+|..+..+ |+.|+|++|.
T Consensus 251 ~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 251 RLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred EEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence 88888884 44788888888888888888854 66888777 7788888888887 455666655543 7778888887
Q ss_pred Cee-cCcccccCCc-CcEEEeecCCCcccccccccCCCCCCEEEeecC
Q 041551 637 IKE-LPSSIECLSN-LQYLYIWDCSELESISSSIFKLNSLESIDISNC 682 (808)
Q Consensus 637 i~~-lp~~~~~l~~-L~~L~L~~n~~l~~lp~~~~~l~~L~~L~l~~c 682 (808)
|+. +|..+..+.. +..|+|++|.+.+.+|. .|..|++++|
T Consensus 328 l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 328 LEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred cCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 774 3444444322 22366777777666654 4556666665
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=7.5e-13 Score=126.72 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=39.4
Q ss_pred ccceEeecCCCCcc--cccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCccccccccCCCCcCEEec
Q 041551 510 EKLVSLKMPRSKVQ--QLWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDL 587 (808)
Q Consensus 510 ~~L~~L~L~~n~l~--~l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l 587 (808)
++|+.|++++|.+. .+|..+..+++|++|+|++|.+... +.+..+++|++|+|++|.....+|..+.++++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 44555555555555 5555555555666666665543322 33555555555555555333324433334444444444
Q ss_pred CC
Q 041551 588 DY 589 (808)
Q Consensus 588 ~~ 589 (808)
++
T Consensus 103 s~ 104 (168)
T 2ell_A 103 SG 104 (168)
T ss_dssp BS
T ss_pred cC
Confidence 44
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=2.7e-13 Score=160.26 Aligned_cols=169 Identities=17% Similarity=0.124 Sum_probs=113.1
Q ss_pred ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCccccccccCCCCcCE
Q 041551 506 NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVETHSTIQYLNKLED 584 (808)
Q Consensus 506 ~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~ 584 (808)
+..+.+|+.|+|++|.+..+|..+..+++|++|+|++|.+. .+|. ++++++|++|+|++|. +..+|..+++|++|++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCE
Confidence 56678899999999999999999889999999999999766 7775 9999999999999995 4488999999999999
Q ss_pred EecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccccccccc---ccEEEecccCCe-ecCcccccCCcCcEEEeecC-
Q 041551 585 LDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSCH---MWRLELTKVGIK-ELPSSIECLSNLQYLYIWDC- 658 (808)
Q Consensus 585 L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~---L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n- 658 (808)
|+|++| .++.+|..+ .+++|++|+|++|...+.+|..+... +..|+|++|.++ .+|. .|..|+++.|
T Consensus 298 L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~ 370 (727)
T 4b8c_D 298 FYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDG 370 (727)
T ss_dssp EECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----------
T ss_pred EECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeeccc
Confidence 999996 678999887 88999999999998777777665443 334778888887 3444 4556667666
Q ss_pred ---CCcccccc----cccCCCCCCEEEeecCC
Q 041551 659 ---SELESISS----SIFKLNSLESIDISNCS 683 (808)
Q Consensus 659 ---~~l~~lp~----~~~~l~~L~~L~l~~c~ 683 (808)
...+.+|. .+..+..+....++.|-
T Consensus 371 ~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Ni 402 (727)
T 4b8c_D 371 EPQREYDSLQQSTEHLATDLAKRTFTVLSYNT 402 (727)
T ss_dssp -------------------------------C
T ss_pred ccccccCCccccccchhhcccccceeeeeccc
Confidence 22233332 23344555555555553
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=2.6e-14 Score=163.73 Aligned_cols=186 Identities=17% Similarity=0.121 Sum_probs=140.4
Q ss_pred CCceeEEEecCCCCCCc---ccCcccceEeecCCCC--------------cccccchhhcccccceec-cCCCCCCCCCC
Q 041551 489 FAEVRHLEWARCPLKTL---NICAEKLVSLKMPRSK--------------VQQLWDDVQDLVNLKEID-LSRSESLTKLP 550 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~--------------l~~l~~~~~~l~~L~~L~-L~~n~~~~~~p 550 (808)
.+.|+.|++++|.++.+ ...+++|+.|++++|. ....|..++.+++|+.|+ ++.|.+ ..++
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-~~L~ 426 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-DDLR 426 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-HHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-chhh
Confidence 56778888988888777 5677889999987764 224456688899999998 555421 1111
Q ss_pred C-------CCC--CCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCccc
Q 041551 551 D-------LSR--AKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFP 620 (808)
Q Consensus 551 ~-------~~~--l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p 620 (808)
. +.. ...|+.|+|++| .+..+|. ++.+++|+.|+|++| .++.+|..+ ++++|+.|+|++|. ++.+|
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp 502 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNA-LENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCG
T ss_pred hhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCC-CCCCc
Confidence 0 111 135899999998 5556886 999999999999996 577999877 88999999999995 55577
Q ss_pred ccccc-cccEEEecccCCeec--CcccccCCcCcEEEeecCCCcccccc---cccCCCCCCEEEe
Q 041551 621 EITSC-HMWRLELTKVGIKEL--PSSIECLSNLQYLYIWDCSELESISS---SIFKLNSLESIDI 679 (808)
Q Consensus 621 ~~~~~-~L~~L~L~~n~i~~l--p~~~~~l~~L~~L~L~~n~~l~~lp~---~~~~l~~L~~L~l 679 (808)
..... .|+.|+|++|.|+.+ |..++.+++|+.|+|++|++.+..|. .+..+++|+.|++
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 33222 299999999999988 89999999999999999998444332 1334899999864
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=2.4e-12 Score=123.16 Aligned_cols=133 Identities=22% Similarity=0.266 Sum_probs=85.8
Q ss_pred ccccceeccCCCCCC-CCCCC-CCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEE
Q 041551 532 LVNLKEIDLSRSESL-TKLPD-LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKEL 608 (808)
Q Consensus 532 l~~L~~L~L~~n~~~-~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L 608 (808)
.++|+.|++++|.+. ..+|. +..+++|++|++++|. +..+ ..+..+++|++|++++|.....+|..+ .+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 466777777777644 35554 5666777777777664 3333 556666666666666654222244433 35555555
Q ss_pred eccCCCCCCcccccccccccEEEecccCCeecC--cccccCCcCcEEEeecCCCcccccc----cccCCCCCCEEEeecC
Q 041551 609 SLRGCSNLKIFPEITSCHMWRLELTKVGIKELP--SSIECLSNLQYLYIWDCSELESISS----SIFKLNSLESIDISNC 682 (808)
Q Consensus 609 ~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp--~~~~~l~~L~~L~L~~n~~l~~lp~----~~~~l~~L~~L~l~~c 682 (808)
++++ |.++.+| ..+..+++|+.|++++|++ ..+|. .+..+++|++|++++|
T Consensus 101 ~Ls~----------------------N~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 101 NLSG----------------------NKLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ECBS----------------------SSCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEET
T ss_pred eccC----------------------CccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCC
Confidence 5554 5556655 5688899999999999987 45554 6888999999999998
Q ss_pred CCCccccC
Q 041551 683 SNLKRFLE 690 (808)
Q Consensus 683 ~~l~~lp~ 690 (808)
. +..+|.
T Consensus 158 ~-~~~~~~ 164 (168)
T 2ell_A 158 E-DQEAPD 164 (168)
T ss_dssp T-SCBCCS
T ss_pred C-hhhccc
Confidence 5 344443
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.9e-11 Score=119.65 Aligned_cols=121 Identities=18% Similarity=0.145 Sum_probs=99.5
Q ss_pred eEEEecCCCCCCc-ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCc
Q 041551 493 RHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLV 570 (808)
Q Consensus 493 r~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~ 570 (808)
+.++++++.+..+ ...+.+|++|+|++|.++.+|..+.++++|++|+|++|.+....+. |.++++|++|+|++|....
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 4677888888877 3345789999999999999998899999999999999987665555 8999999999999996655
Q ss_pred cccccccCCCCcCEEecCCCCCCCcCCCc-C-CCCCCCEEeccCCC
Q 041551 571 ETHSTIQYLNKLEDLDLDYCISLTSLPTS-I-HSKHLKELSLRGCS 614 (808)
Q Consensus 571 ~~p~~~~~l~~L~~L~l~~~~~l~~lp~~-~-~l~~L~~L~L~~~~ 614 (808)
..|..+..+++|++|+|++| .++.+|.. + .+++|+.|+|++|.
T Consensus 93 i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred eCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 55567899999999999995 57778775 3 68889999998874
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=3.5e-12 Score=119.32 Aligned_cols=123 Identities=27% Similarity=0.324 Sum_probs=62.4
Q ss_pred cccceeccCCCCCC-CCCCC-CCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEe
Q 041551 533 VNLKEIDLSRSESL-TKLPD-LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELS 609 (808)
Q Consensus 533 ~~L~~L~L~~n~~~-~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~ 609 (808)
++|+.|++++|.+. +.+|. +..+++|++|++++|. +..+ ..++.+++|++|++++|.....+|..+ .+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555433 23343 4455555555555552 2222 445555555555555543222244433 355555555
Q ss_pred ccCCCCCCcccccccccccEEEecccCCeecC--cccccCCcCcEEEeecCCCcccccc----cccCCCCCCEEEee
Q 041551 610 LRGCSNLKIFPEITSCHMWRLELTKVGIKELP--SSIECLSNLQYLYIWDCSELESISS----SIFKLNSLESIDIS 680 (808)
Q Consensus 610 L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp--~~~~~l~~L~~L~L~~n~~l~~lp~----~~~~l~~L~~L~l~ 680 (808)
+++|. ++.+| ..++.+++|+.|++++|++ ..+|. .+..+++|+.|+++
T Consensus 95 ls~N~----------------------i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNK----------------------IKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSC----------------------CCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCc----------------------CCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCC
Confidence 55542 22222 4466667777777776665 33333 46667777777665
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=1.8e-11 Score=119.85 Aligned_cols=122 Identities=18% Similarity=0.188 Sum_probs=84.9
Q ss_pred eEEEecCCCCCCc-ccCcccceEeecCCCCcccccch--hhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCC
Q 041551 493 RHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWDD--VQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLS 568 (808)
Q Consensus 493 r~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~--~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~ 568 (808)
++++++++.+..+ ...+.+|++|++++|.+..++.. +..+++|++|+|++|.+....|. |.++++|++|+|++|..
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 4677777777766 22344778888888888777653 77788888888888876665564 77788888888888755
Q ss_pred CccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCC
Q 041551 569 LVETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCS 614 (808)
Q Consensus 569 l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~ 614 (808)
....|..+..+++|++|+|++|...+..|..+ .+++|++|+|++|.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 55455557778888888888764333335444 66777777777764
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=6.4e-12 Score=117.50 Aligned_cols=112 Identities=22% Similarity=0.212 Sum_probs=81.6
Q ss_pred CCCCcEEecCCCCCC-ccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccccccEEEec
Q 041551 555 AKNLEILWLRGCLSL-VETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCHMWRLELT 633 (808)
Q Consensus 555 l~~L~~L~L~~n~~l-~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~ 633 (808)
.++|+.|++++|... +.+|..+..+++|++|++++| .++.++....+++|++|++++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n-------------------- 74 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDN-------------------- 74 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSS--------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCC--------------------
Confidence 467888888888554 477777788888888888886 4555533225666666666555
Q ss_pred ccCCee-cCcccccCCcCcEEEeecCCCccc-ccccccCCCCCCEEEeecCCCCccccC
Q 041551 634 KVGIKE-LPSSIECLSNLQYLYIWDCSELES-ISSSIFKLNSLESIDISNCSNLKRFLE 690 (808)
Q Consensus 634 ~n~i~~-lp~~~~~l~~L~~L~L~~n~~l~~-lp~~~~~l~~L~~L~l~~c~~l~~lp~ 690 (808)
.++. +|..++.+++|+.|++++|.+.+. .|..+..+++|++|++++|+ +..+|.
T Consensus 75 --~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~ 130 (149)
T 2je0_A 75 --RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLND 130 (149)
T ss_dssp --CCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTT
T ss_pred --cccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHH
Confidence 4554 666677899999999999997442 33779999999999999984 555544
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=2.6e-11 Score=118.70 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=48.3
Q ss_pred eEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC--CCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCCC
Q 041551 513 VSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD--LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYC 590 (808)
Q Consensus 513 ~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~ 590 (808)
+.+++++++++.+|..+.. +|++|+|++|.+....+. +..+++|++|+|++|......|..+.++++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5677777777777765433 677777777765444442 666777777777776554444556666666666666664
No 139
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=5.2e-10 Score=122.25 Aligned_cols=249 Identities=16% Similarity=0.104 Sum_probs=150.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc--------cCceEEEecchhhhhcc-CHHHHHHHHHhhHhcCc-------cc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH--------FEGSYFAQNVREAEETG-GIKDLQKELLSDVLNDR-------IL 230 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~--------F~~~~~~~~~~~~~~~~-~~~~l~~~ll~~~~~~~-------~~ 230 (808)
.+.+.|+|++|+||||||+.+++..... ....+|+.. .... ....+...++..+.+.. ..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 120 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC----REVGGTPQAVLSSLAGKLTGFSVPKHGINLG 120 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH----HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC----ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHH
Confidence 4579999999999999999999976443 223455542 2223 45566666666553221 11
Q ss_pred ccHHHHHHHHccceEEEEEecCCCHHH-------HHHHHhccCCCCCCCEEEEEeCchhhhhhc------CCCeEEEecC
Q 041551 231 RDVRSQLNRLARKMVLLVFDDVNNPRQ-------IESLIGHLDHLASGSRVIITTRDKQVLKNC------WAGQIYQMKE 297 (808)
Q Consensus 231 ~~~~~l~~~L~~~~~LlVlDdv~~~~~-------~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~------~~~~~~~l~~ 297 (808)
+....+.+.+..++.+|||||++.... +..+... . .+..+|+||+........ .....+.+++
T Consensus 121 ~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~ 196 (384)
T 2qby_B 121 EYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKP 196 (384)
T ss_dssp HHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECC
T ss_pred HHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECC
Confidence 345666667776666999999976432 2333322 2 678899999876321111 1124899999
Q ss_pred CChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc---Cchh-hHHHHhhhh--c----CCCHHHHHHHHhhhhcCcch
Q 041551 298 LVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQ---GVPL-ALKVLGCYL--C----GRSKEEWESAMRKLEIIPHV 367 (808)
Q Consensus 298 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~---glPL-al~~~~~~L--~----~~~~~~w~~~l~~l~~~~~~ 367 (808)
++.++..+++..++...-....-..+..+.+++.++ |.|. |+..+.... . ..+.+.+..++.+..
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~----- 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE----- 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH-----
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-----
Confidence 999999999998863211111122345677888888 8876 443332222 1 236677777766542
Q ss_pred hHHHHHHHhhcCCcHHHHHHHhhhhhccCCcch-hHHHHHHhhcCCc------chhhhhhhhcccceeee
Q 041551 368 EIQEVLKISYDSLDDSQKNIFLDIACFLEGEHR-DKVISFFDASGLE------AKIELSVLEGKSLINLD 430 (808)
Q Consensus 368 ~i~~~l~~sy~~L~~~~k~~fl~la~fp~~~~~-~~l~~~~~~~g~~------~~~~l~~L~~~sLi~~~ 430 (808)
...+..+++.|+++++..+..++....+.+. +....+....|.. ....+..|.+.++++..
T Consensus 272 --~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 272 --QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp --HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred --cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 2346667789999999988888871110111 1222222222211 12347889999999764
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=1.5e-11 Score=118.67 Aligned_cols=126 Identities=17% Similarity=0.263 Sum_probs=58.0
Q ss_pred cccccceeccCCCCCCCCCCCCCCCC-CCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC--CCCCCCE
Q 041551 531 DLVNLKEIDLSRSESLTKLPDLSRAK-NLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI--HSKHLKE 607 (808)
Q Consensus 531 ~l~~L~~L~L~~n~~~~~~p~~~~l~-~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l~~L~~ 607 (808)
++.+|+.|++++|.+. .+|.+..+. +|++|++++|. +..+ ..+..+++|++|++++| .++.+|... .+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence 3444444444444322 233333322 45555555542 2222 34455555555555553 344444322 3455555
Q ss_pred EeccCCCCCCcccccccccccEEEecccCCeecCc--ccccCCcCcEEEeecCCCccccccc----ccCCCCCCEEEeec
Q 041551 608 LSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPS--SIECLSNLQYLYIWDCSELESISSS----IFKLNSLESIDISN 681 (808)
Q Consensus 608 L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~--~~~~l~~L~~L~L~~n~~l~~lp~~----~~~l~~L~~L~l~~ 681 (808)
|++++| .|+.+|. .+..+++|+.|++++|++ ..+|.. +..+++|+.|++++
T Consensus 93 L~L~~N----------------------~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 93 LILTNN----------------------SLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp EECCSC----------------------CCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEE
T ss_pred EECCCC----------------------cCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCc
Confidence 544443 2223333 345555555555555554 344442 55556666666555
Q ss_pred CC
Q 041551 682 CS 683 (808)
Q Consensus 682 c~ 683 (808)
|+
T Consensus 150 n~ 151 (176)
T 1a9n_A 150 VK 151 (176)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=2.2e-11 Score=117.39 Aligned_cols=114 Identities=15% Similarity=0.128 Sum_probs=75.4
Q ss_pred CCCCCCCCCcEEecCCCCCCccccccccCCC-CcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCccccccccccc
Q 041551 550 PDLSRAKNLEILWLRGCLSLVETHSTIQYLN-KLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSCHMW 628 (808)
Q Consensus 550 p~~~~l~~L~~L~L~~n~~l~~~p~~~~~l~-~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~~L~ 628 (808)
+.+.++++|+.|++++|. +..+|. +..+. +|++|++++| .++.++....+++ |+
T Consensus 13 ~~~~~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~----------------------L~ 67 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDN-EIRKLDGFPLLRR----------------------LK 67 (176)
T ss_dssp CEEECTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSS-CCCEECCCCCCSS----------------------CC
T ss_pred HhcCCcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCC-CCCcccccccCCC----------------------CC
Confidence 335556667777777763 334443 33333 6666666664 3444422223444 45
Q ss_pred EEEecccCCeecCccc-ccCCcCcEEEeecCCCcccccc--cccCCCCCCEEEeecCCCCccccC
Q 041551 629 RLELTKVGIKELPSSI-ECLSNLQYLYIWDCSELESISS--SIFKLNSLESIDISNCSNLKRFLE 690 (808)
Q Consensus 629 ~L~L~~n~i~~lp~~~-~~l~~L~~L~L~~n~~l~~lp~--~~~~l~~L~~L~l~~c~~l~~lp~ 690 (808)
.|+|++|.|+.+|..+ ..+++|+.|+|++|.+ +.+|. .+..+++|+.|++++|+ +..+|.
T Consensus 68 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~ 130 (176)
T 1a9n_A 68 TLLVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNP-VTNKKH 130 (176)
T ss_dssp EEECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSG-GGGSTT
T ss_pred EEECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCC-CCCcHh
Confidence 5556666777887664 8999999999999987 77886 78899999999999986 344443
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=1.2e-10 Score=114.02 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=36.4
Q ss_pred eEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCC
Q 041551 513 VSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDY 589 (808)
Q Consensus 513 ~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~ 589 (808)
+.++++++.++.+|..+. ++|++|+|++|.+. .+|. +.++++|+.|+|++|......+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 345666666666655432 35555555555432 3332 55555555555555533322233344455555555544
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=1.8e-10 Score=111.06 Aligned_cols=121 Identities=20% Similarity=0.269 Sum_probs=74.3
Q ss_pred eEEEecCCCCCCc-ccCcccceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCC
Q 041551 493 RHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSL 569 (808)
Q Consensus 493 r~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l 569 (808)
+.+++.++.+..+ ...+++|+.|++++|.+..++.. +..+++|++|+|++|.+....+. +..+++|++|+|++|...
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence 3455666666655 33345677777777777766554 56677777777777754433333 567777777777776443
Q ss_pred ccccccccCCCCcCEEecCCCCCCCcCCCcC--CCCCCCEEeccCCC
Q 041551 570 VETHSTIQYLNKLEDLDLDYCISLTSLPTSI--HSKHLKELSLRGCS 614 (808)
Q Consensus 570 ~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l~~L~~L~L~~~~ 614 (808)
...+..+..+++|++|++++| .++.+|... .+++|++|++++|.
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 333333566777777777764 455666543 46667777776664
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.16 E-value=1.1e-09 Score=119.57 Aligned_cols=253 Identities=14% Similarity=0.106 Sum_probs=147.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccC---ceEEEecchhhhhccCHHHHHHHHHhhHhcCc------ccccHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFE---GSYFAQNVREAEETGGIKDLQKELLSDVLNDR------ILRDVRSQL 237 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~---~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~------~~~~~~~l~ 237 (808)
.+.+.|+|++|+||||||+.+++.....+. ..+|+.. ........+...++..+.... ..+....+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~----~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~ 120 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT----RQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLV 120 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH----HHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC----CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 557899999999999999999998766542 3455552 222344555555555442211 112244455
Q ss_pred HHHc--cceEEEEEecCCCH------HHHHHHHhccCC-CCCCCEEEEEeCchhhhhhcC-------CCeEEEecCCChh
Q 041551 238 NRLA--RKMVLLVFDDVNNP------RQIESLIGHLDH-LASGSRVIITTRDKQVLKNCW-------AGQIYQMKELVYT 301 (808)
Q Consensus 238 ~~L~--~~~~LlVlDdv~~~------~~~~~l~~~l~~-~~~gs~IiiTTR~~~v~~~~~-------~~~~~~l~~L~~~ 301 (808)
+.+. +++.+||||+++.. +.+..+...+.. ...+..+|+||+......... ....+.+++++.+
T Consensus 121 ~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~ 200 (386)
T 2qby_A 121 KAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAE 200 (386)
T ss_dssp HHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHH
T ss_pred HHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHH
Confidence 5554 45899999998653 334444443321 134566788888765432221 1258999999999
Q ss_pred hHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc---CchhhHHHHhh-hhc-----C---CCHHHHHHHHhhhhcCcchhH
Q 041551 302 DAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQ---GVPLALKVLGC-YLC-----G---RSKEEWESAMRKLEIIPHVEI 369 (808)
Q Consensus 302 ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~---glPLal~~~~~-~L~-----~---~~~~~w~~~l~~l~~~~~~~i 369 (808)
+..+++...+........-..+..+.+++.++ |.|..+..+.. ... + -+.+.+..++....
T Consensus 201 ~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~------- 273 (386)
T 2qby_A 201 ELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE------- 273 (386)
T ss_dssp HHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------
Confidence 99999998653211112233456677888887 99884433222 211 1 24555555554432
Q ss_pred HHHHHHhhcCCcHHHHHHHhhhhhccC-Cc---chhHH----HHHHhhcCCc------chhhhhhhhcccceeee
Q 041551 370 QEVLKISYDSLDDSQKNIFLDIACFLE-GE---HRDKV----ISFFDASGLE------AKIELSVLEGKSLINLD 430 (808)
Q Consensus 370 ~~~l~~sy~~L~~~~k~~fl~la~fp~-~~---~~~~l----~~~~~~~g~~------~~~~l~~L~~~sLi~~~ 430 (808)
...+.-.+..+++..+.++..++.+.+ +. ....+ ..+....|.. ....++.|.+.++|+..
T Consensus 274 ~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 274 RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 234566678899999999888886432 21 22222 2222222221 23458889999999764
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.16 E-value=1.8e-10 Score=110.96 Aligned_cols=126 Identities=19% Similarity=0.203 Sum_probs=71.9
Q ss_pred ceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCcccc-ccccCCCCcCEEecCC
Q 041551 512 LVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVETH-STIQYLNKLEDLDLDY 589 (808)
Q Consensus 512 L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L~l~~ 589 (808)
.+.++++++++..+|..+ .++|+.|++++|.+....+. +..+++|++|++++|... .+| ..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCC
Confidence 456777777777777544 25777777777765443333 567777777777776433 333 3356666666666666
Q ss_pred CCCCCcCCCcC--CCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCcc-cccCCcCcEEEeecCCCccc
Q 041551 590 CISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSS-IECLSNLQYLYIWDCSELES 663 (808)
Q Consensus 590 ~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~l~~ 663 (808)
| .++.+|... .+++|++|++++| .++.+|.. +..+++|+.|+|++|++...
T Consensus 86 N-~l~~~~~~~~~~l~~L~~L~l~~N----------------------~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 N-KLQSLPNGVFDKLTQLKELALDTN----------------------QLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSS----------------------CCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred C-CccccCHHHhhCCcccCEEECcCC----------------------cceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 4 344444422 3444554444443 33344433 35566666666666655433
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=9.8e-13 Score=129.63 Aligned_cols=146 Identities=15% Similarity=0.170 Sum_probs=91.2
Q ss_pred hhcccccceeccCCCCCCCCCCC-------CCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcCCCcC-
Q 041551 529 VQDLVNLKEIDLSRSESLTKLPD-------LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSLPTSI- 600 (808)
Q Consensus 529 ~~~l~~L~~L~L~~n~~~~~~p~-------~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~- 600 (808)
+....+++.++++.+.+....|. +..+++|++|+|++|. +..+| .+..+++|++|++++| .++.+|..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-Ccccccchhh
Confidence 44455566666666555444442 4556666666666663 33455 6666666777777664 455666544
Q ss_pred CCCCCCEEeccCCCCCCcccccccc-cccEEEecccCCeecCc--ccccCCcCcEEEeecCCCccccccc----------
Q 041551 601 HSKHLKELSLRGCSNLKIFPEITSC-HMWRLELTKVGIKELPS--SIECLSNLQYLYIWDCSELESISSS---------- 667 (808)
Q Consensus 601 ~l~~L~~L~L~~~~~l~~~p~~~~~-~L~~L~L~~n~i~~lp~--~~~~l~~L~~L~L~~n~~l~~lp~~---------- 667 (808)
.+++|++|++++| .+..+|..... .|+.|++++|.++.+|. .+..+++|+.|++++|++.+..|..
T Consensus 91 ~~~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 91 VADTLEELWISYN-QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHHCSEEEEEEE-ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred cCCcCCEEECcCC-cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 4466777777766 34444432211 27777777788877654 5788888888888888875554432
Q ss_pred ccCCCCCCEEE
Q 041551 668 IFKLNSLESID 678 (808)
Q Consensus 668 ~~~l~~L~~L~ 678 (808)
+..+++|+.|+
T Consensus 170 ~~~l~~L~~Ld 180 (198)
T 1ds9_A 170 VKRLPNLKKLD 180 (198)
T ss_dssp HHHCSSCSEEC
T ss_pred HHhCCCcEEEC
Confidence 67788888887
No 147
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.12 E-value=2.3e-11 Score=141.21 Aligned_cols=243 Identities=15% Similarity=0.079 Sum_probs=126.2
Q ss_pred CCceeEEEecCCCCCCc--------ccCcccceEeecCCCCcccccchhhcccccceeccCCCCCCC---CCC-CCCCCC
Q 041551 489 FAEVRHLEWARCPLKTL--------NICAEKLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLT---KLP-DLSRAK 556 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l--------~~~~~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~---~~p-~~~~l~ 556 (808)
.++|+.|++++|.+..+ ...+++|++|++++|.+..++..+..+++|+.|+++++.... ..+ .+..++
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 56788888888777522 335678888888888888877778888888888887543221 111 255566
Q ss_pred CCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCcC--------------------------CCcC-CCCCCCEEe
Q 041551 557 NLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTSL--------------------------PTSI-HSKHLKELS 609 (808)
Q Consensus 557 ~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~l--------------------------p~~~-~l~~L~~L~ 609 (808)
+|+.|+++++ ....+|..+..+++|++|++++|. ++.. +... .+++|++|+
T Consensus 271 ~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 271 KLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp TCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 6666666654 334455555666666666666654 2211 1111 234555555
Q ss_pred ccC----------CCCCCc--ccccc--cccccEEEecccCCee-cCccccc-CCcCcEEEeec---CCCccc------c
Q 041551 610 LRG----------CSNLKI--FPEIT--SCHMWRLELTKVGIKE-LPSSIEC-LSNLQYLYIWD---CSELES------I 664 (808)
Q Consensus 610 L~~----------~~~l~~--~p~~~--~~~L~~L~L~~n~i~~-lp~~~~~-l~~L~~L~L~~---n~~l~~------l 664 (808)
+++ |..+.. ++... ...|+.|+++.|.++. .+..+.. +++|+.|++++ |+.++. +
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~ 428 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV 428 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence 552 333321 11111 1126666665555552 2233333 66677777752 223333 2
Q ss_pred cccccCCCCCCEEEeecCCC-Ccc--ccCCCCCcCCCCceeeecCCCCCCCC-cccccccCCCccccccccccccc
Q 041551 665 SSSIFKLNSLESIDISNCSN-LKR--FLEIPSCNIDGGFAFCIVVPHCWEPC-ETHEVFCGLKHKSQRNLDRRSLG 736 (808)
Q Consensus 665 p~~~~~l~~L~~L~l~~c~~-l~~--lp~~~~~~~~~~~~~~l~l~~~~~~~-~~~~~f~~l~~l~~~~l~~n~~~ 736 (808)
+..+..+++|+.|++++|.. +.. +..+... ...+..+.+..|.+.. ..+..+..+++++.+++++|.+.
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~ 501 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY---SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS---CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh---CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence 22344566677777765432 110 0000000 0113344555555543 22233455667777777776643
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=4.2e-10 Score=120.20 Aligned_cols=228 Identities=11% Similarity=0.025 Sum_probs=132.2
Q ss_pred CceeEEEecCCCCCCc---ccCcccceEeecCCCCcccccch-hhc--------ccccceeccCCCCCCCCCCC--CCCC
Q 041551 490 AEVRHLEWARCPLKTL---NICAEKLVSLKMPRSKVQQLWDD-VQD--------LVNLKEIDLSRSESLTKLPD--LSRA 555 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~-~~~--------l~~L~~L~L~~n~~~~~~p~--~~~l 555 (808)
++|+.|++++|.+... ......+..+.+..+ .+|+. |.+ |++|+.|+|.+ . +..+++ |.++
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~ 123 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGC 123 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTC
T ss_pred ccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcC
Confidence 4566666666655522 111111222333333 34433 566 88888888887 3 444553 8888
Q ss_pred CCCcEEecCCCCCCccccccccCCCCcCEEecCCCC---CCCcCCCcC--CCCCC-------------------------
Q 041551 556 KNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCI---SLTSLPTSI--HSKHL------------------------- 605 (808)
Q Consensus 556 ~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~---~l~~lp~~~--~l~~L------------------------- 605 (808)
++|+.|++.+|......+..|..+.++..+.+.... ....+.... ++.+|
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD 203 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence 888888888875444444556666666666654411 111111111 22333
Q ss_pred -CEEeccCCCCCCccccc--ccccccEEEecccCCeecCcc-cccCCcCcEEEeecCCCcccccc-cccCCCCCC-EEEe
Q 041551 606 -KELSLRGCSNLKIFPEI--TSCHMWRLELTKVGIKELPSS-IECLSNLQYLYIWDCSELESISS-SIFKLNSLE-SIDI 679 (808)
Q Consensus 606 -~~L~L~~~~~l~~~p~~--~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~l~~lp~-~~~~l~~L~-~L~l 679 (808)
..+.+.++-....+... ....|+.|+|++|.++.+|.. |.++++|+.|+|.+| +..++. .|.++++|+ .|++
T Consensus 204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEE
T ss_pred cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEE
Confidence 33333322100000000 012388899998889888775 888899999999876 466654 478888898 8988
Q ss_pred ecCCCCccccCCCCCcCCC-CceeeecCCCCCCCCcccccccCCCcccccc
Q 041551 680 SNCSNLKRFLEIPSCNIDG-GFAFCIVVPHCWEPCETHEVFCGLKHKSQRN 729 (808)
Q Consensus 680 ~~c~~l~~lp~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~ 729 (808)
.+ .++.++.. .+.+ ..+..+.+.+|.+..+.+..|..+++|+.++
T Consensus 282 ~~--~l~~I~~~---aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 282 PA--SVTAIEFG---AFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CT--TCCEECTT---TTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cc--cceEEchh---hhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 77 45555432 3322 2355567777888877778888888777654
No 149
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.06 E-value=7.2e-09 Score=113.31 Aligned_cols=275 Identities=13% Similarity=0.066 Sum_probs=157.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc-CceEEEecchhhhhccCHHHHHHHHHhhHhcCc------ccccHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF-EGSYFAQNVREAEETGGIKDLQKELLSDVLNDR------ILRDVRSQLNR 239 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F-~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~------~~~~~~~l~~~ 239 (808)
.+.+.|+|++|+||||||+.+++...... ...+++.. ........+...++..+.... ..+..+.+.+.
T Consensus 44 ~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 119 (389)
T 1fnn_A 44 YPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING----FIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEH 119 (389)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET----TTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC----ccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHH
Confidence 34799999999999999999999776542 23455542 223344555555555442211 11233444444
Q ss_pred Hc--cceEEEEEecCCC--HHHHHHHHhccCCCC----CCCEEEEEeCchhhhhhcC-------CCeEEEecCCChhhHH
Q 041551 240 LA--RKMVLLVFDDVNN--PRQIESLIGHLDHLA----SGSRVIITTRDKQVLKNCW-------AGQIYQMKELVYTDAQ 304 (808)
Q Consensus 240 L~--~~~~LlVlDdv~~--~~~~~~l~~~l~~~~----~gs~IiiTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~ 304 (808)
+. +++.+||||+++. .+.+..+...+.... .+..||++|+..+...... ....+.+++++.++..
T Consensus 120 l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~ 199 (389)
T 1fnn_A 120 LRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIF 199 (389)
T ss_dssp HHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHH
T ss_pred HhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHH
Confidence 43 5688999999975 455666655543222 4667888888765433221 1237899999999999
Q ss_pred HHHHHHhhcCCCCCchHHHHHHHHHHHh---------cCchhhHHHHhhh-h--c---C---CCHHHHHHHHhhhhcCcc
Q 041551 305 KLFSQYAFRGGHLDSSYTELTDKAIKYA---------QGVPLALKVLGCY-L--C---G---RSKEEWESAMRKLEIIPH 366 (808)
Q Consensus 305 ~Lf~~~~~~~~~~~~~~~~~~~~i~~~~---------~glPLal~~~~~~-L--~---~---~~~~~w~~~l~~l~~~~~ 366 (808)
+++...+........-..+..+.+++.+ +|.|..+..+... . . + .+.+....+.......
T Consensus 200 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~-- 277 (389)
T 1fnn_A 200 DILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFG-- 277 (389)
T ss_dssp HHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhh--
Confidence 9998876321111223356778899999 7887544333222 1 1 1 1333444433332211
Q ss_pred hhHHHHHHHhhcCCcHHHHHHHhhhhhcc---CC--cchhHHHHHHh----hcCCc------chhhhhhhhcccceeeec
Q 041551 367 VEIQEVLKISYDSLDDSQKNIFLDIACFL---EG--EHRDKVISFFD----ASGLE------AKIELSVLEGKSLINLDV 431 (808)
Q Consensus 367 ~~i~~~l~~sy~~L~~~~k~~fl~la~fp---~~--~~~~~l~~~~~----~~g~~------~~~~l~~L~~~sLi~~~~ 431 (808)
.+.-.+..|+.+.+.++..++.+. .+ .....+...+. ..|.. ....++.|.++++|....
T Consensus 278 -----~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 278 -----ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp -----CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred -----hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEee
Confidence 122235668888888888888764 22 23333333222 22221 124488899999997743
Q ss_pred C-------CeEE-------ecHHHHHHHHHHHhhc
Q 041551 432 F-------DQIR-------MHDLLRDMGREIVRNE 452 (808)
Q Consensus 432 ~-------~~~~-------mHdlv~~~~~~i~~~e 452 (808)
. ++++ .|+++..+...+..+|
T Consensus 353 ~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 353 NKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp C---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 2 2222 4566666665555443
No 150
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.05 E-value=6.2e-11 Score=137.63 Aligned_cols=123 Identities=20% Similarity=0.165 Sum_probs=50.6
Q ss_pred hcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCC---ccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCC
Q 041551 530 QDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSL---VETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKH 604 (808)
Q Consensus 530 ~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l---~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~ 604 (808)
.++++|+.|+|++|.... +|. +.++++|+.|+++++... ...+..+..+++|+.|+++++ ....+|..+ .+++
T Consensus 217 ~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~ 294 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQ 294 (592)
T ss_dssp HHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGG
T ss_pred hhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCC
Confidence 344444444444443222 222 444444444444432111 112233444445555555442 233344333 4455
Q ss_pred CCEEeccCCCCCCc--cccccc--ccccEEEecccCCe--ecCcccccCCcCcEEEee
Q 041551 605 LKELSLRGCSNLKI--FPEITS--CHMWRLELTKVGIK--ELPSSIECLSNLQYLYIW 656 (808)
Q Consensus 605 L~~L~L~~~~~l~~--~p~~~~--~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~L~ 656 (808)
|++|+|++|. +.. ++.... ..|+.|+++ +.+. .++..+..+++|+.|+|+
T Consensus 295 L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 295 IRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp CCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred CcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEee
Confidence 5555555554 211 111111 125555555 2222 223333455566666665
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=4.6e-10 Score=119.93 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=51.6
Q ss_pred eeEEEecCCCCCCc-ccC--------cccceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCCC-CCCCCCCcE
Q 041551 492 VRHLEWARCPLKTL-NIC--------AEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEI 560 (808)
Q Consensus 492 Lr~L~l~~~~l~~l-~~~--------~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~ 560 (808)
++.+.+..+.+..- +.. +.+|+.|.|+. .++.+++. |.+|++|+.|++++|......+. |.++.++..
T Consensus 74 ~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~ 152 (329)
T 3sb4_A 74 GKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIF 152 (329)
T ss_dssp GCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEE
T ss_pred cccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEE
Confidence 44555555544433 555 78999999998 88888765 89999999999999865543333 777777777
Q ss_pred EecCC
Q 041551 561 LWLRG 565 (808)
Q Consensus 561 L~L~~ 565 (808)
+.+..
T Consensus 153 l~~~~ 157 (329)
T 3sb4_A 153 IPLGS 157 (329)
T ss_dssp ECTTC
T ss_pred ecCcc
Confidence 76654
No 152
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.01 E-value=1.4e-08 Score=110.86 Aligned_cols=253 Identities=14% Similarity=0.114 Sum_probs=145.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc-----C-ceEEEecchhhhhccCHHHHHHHHHhhHhcCcc------cccHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF-----E-GSYFAQNVREAEETGGIKDLQKELLSDVLNDRI------LRDVR 234 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F-----~-~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~------~~~~~ 234 (808)
.+.+.|+|++|+||||||+.+++.....+ . ..+++.. ........+...++..+..... .+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 119 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA----RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYE 119 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET----TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC----CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 55789999999999999999999764432 2 2344442 2233445555555555432111 12344
Q ss_pred HHHHHH--ccceEEEEEecCCCHH----H---HHHHHhccCCC--CCCCEEEEEeCchhhhhhc------C-CCeEEEec
Q 041551 235 SQLNRL--ARKMVLLVFDDVNNPR----Q---IESLIGHLDHL--ASGSRVIITTRDKQVLKNC------W-AGQIYQMK 296 (808)
Q Consensus 235 ~l~~~L--~~~~~LlVlDdv~~~~----~---~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~~------~-~~~~~~l~ 296 (808)
.+.+.+ .+++.+||||+++... . +..+....... ..+..+|.||+..+..... . ....+.++
T Consensus 120 ~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~ 199 (387)
T 2v1u_A 120 RLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFP 199 (387)
T ss_dssp HHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBC
T ss_pred HHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeC
Confidence 555555 3468999999998643 2 22333322211 4466788888776321111 1 12578999
Q ss_pred CCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc---Cchhh-HHHHhhhh---c--C---CCHHHHHHHHhhhhcC
Q 041551 297 ELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQ---GVPLA-LKVLGCYL---C--G---RSKEEWESAMRKLEII 364 (808)
Q Consensus 297 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~---glPLa-l~~~~~~L---~--~---~~~~~w~~~l~~l~~~ 364 (808)
+++.++..+++...+........-..+..+.++++++ |.|.. +..+.... . + -+.+.+..++....
T Consensus 200 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-- 277 (387)
T 2v1u_A 200 PYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE-- 277 (387)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH--
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh--
Confidence 9999999999998753210111122345677888888 99943 33222221 1 1 25566666665542
Q ss_pred cchhHHHHHHHhhcCCcHHHHHHHhhhhhccCCc---chhHH----HHHHhhcCCc------chhhhhhhhcccceeee
Q 041551 365 PHVEIQEVLKISYDSLDDSQKNIFLDIACFLEGE---HRDKV----ISFFDASGLE------AKIELSVLEGKSLINLD 430 (808)
Q Consensus 365 ~~~~i~~~l~~sy~~L~~~~k~~fl~la~fp~~~---~~~~l----~~~~~~~g~~------~~~~l~~L~~~sLi~~~ 430 (808)
...+.-++..|+++.+..+..++....+. ....+ ..+....|.. ....++.|...++++..
T Consensus 278 -----~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 278 -----RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp -----HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred -----hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 22455677899999999888888543332 22322 2222222221 22447888999999764
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.97 E-value=6.2e-09 Score=105.50 Aligned_cols=171 Identities=14% Similarity=0.168 Sum_probs=101.5
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhc--Cc---ccccHHHHHHHH--
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLN--DR---ILRDVRSQLNRL-- 240 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~--~~---~~~~~~~l~~~L-- 240 (808)
+.+.|+|.+|+||||||+.+++.....+.....-.. .......+.......... .. ....+..+.+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG-----VCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY 120 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCS-----CSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc-----ccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhh
Confidence 478999999999999999999876543321100000 000000000000000000 00 001122222222
Q ss_pred ---ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchhhhh-h-cCCCeEEEecCCChhhHHHHHHHHhhc
Q 041551 241 ---ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQVLK-N-CWAGQIYQMKELVYTDAQKLFSQYAFR 313 (808)
Q Consensus 241 ---~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~-~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 313 (808)
.+++.+||+||++. .+.++.+...+.....+.++|+||+...... . ......+++++++.+|..+++...+..
T Consensus 121 ~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~ 200 (250)
T 1njg_A 121 APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNE 200 (250)
T ss_dssp SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred chhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh
Confidence 34679999999964 5667777766655566788899887654221 1 122468899999999999999987754
Q ss_pred CCCCCchHHHHHHHHHHHhcCchhhHHHHhhh
Q 041551 314 GGHLDSSYTELTDKAIKYAQGVPLALKVLGCY 345 (808)
Q Consensus 314 ~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~ 345 (808)
... .-..+..+.|++.++|.|..+..+...
T Consensus 201 ~~~--~~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 201 EHI--AHEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp TTC--CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCC--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 222 223456788999999999988776543
No 154
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.96 E-value=8.5e-11 Score=136.50 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=56.9
Q ss_pred CceeEEEecCCCCCCc-----ccCcccceEeecCCC-Cccc--ccchhhcccccceeccCCCCCCCCC----CC-CCCCC
Q 041551 490 AEVRHLEWARCPLKTL-----NICAEKLVSLKMPRS-KVQQ--LWDDVQDLVNLKEIDLSRSESLTKL----PD-LSRAK 556 (808)
Q Consensus 490 ~~Lr~L~l~~~~l~~l-----~~~~~~L~~L~L~~n-~l~~--l~~~~~~l~~L~~L~L~~n~~~~~~----p~-~~~l~ 556 (808)
++|+.|++++|.+... ...+++|++|+|++| .+.. ++..+.++++|++|+|++|.+.... +. ...++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4566666666554432 113456666666655 3332 3333445666666666666532221 11 22455
Q ss_pred CCcEEecCCCC-CC--ccccccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEec
Q 041551 557 NLEILWLRGCL-SL--VETHSTIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSL 610 (808)
Q Consensus 557 ~L~~L~L~~n~-~l--~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L 610 (808)
+|+.|++++|. .+ ..++..+.++++|++|++++|..++.+|..+ .+++|+.|++
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence 66666666553 00 0111122334566666666654444433333 3445555543
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=2.6e-09 Score=102.02 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=78.6
Q ss_pred cceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCccccc-cccCCCCcCEEecC
Q 041551 511 KLVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVETHS-TIQYLNKLEDLDLD 588 (808)
Q Consensus 511 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~-~~~~l~~L~~L~l~ 588 (808)
..+.+++++|.++.+|..+. ++|++|+|++|.+....|. |.++++|++|+|++|... .+|. .+..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence 45678888999998887663 7889999999977666665 888999999999998544 5554 46889999999999
Q ss_pred CCCCCCcCCCc-C-CCCCCCEEeccCCC
Q 041551 589 YCISLTSLPTS-I-HSKHLKELSLRGCS 614 (808)
Q Consensus 589 ~~~~l~~lp~~-~-~l~~L~~L~L~~~~ 614 (808)
+| .++.+|.. + .+++|++|+|++|.
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 85 57777764 4 77888888888874
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=3.3e-09 Score=101.69 Aligned_cols=99 Identities=17% Similarity=0.245 Sum_probs=77.9
Q ss_pred ceEeecCCCCcccccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCCcccccc-ccCCCCcCEEecCC
Q 041551 512 LVSLKMPRSKVQQLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSLVETHST-IQYLNKLEDLDLDY 589 (808)
Q Consensus 512 L~~L~L~~n~l~~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~-~~~l~~L~~L~l~~ 589 (808)
-+.+++++|.+..+|..+. ++|++|+|++|.+....|. |.++++|++|+|++|. +..+|.. +.++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCC
Confidence 3578888888888887764 7899999999987666665 8889999999999984 4456554 57889999999998
Q ss_pred CCCCCcCCCc-C-CCCCCCEEeccCCC
Q 041551 590 CISLTSLPTS-I-HSKHLKELSLRGCS 614 (808)
Q Consensus 590 ~~~l~~lp~~-~-~l~~L~~L~L~~~~ 614 (808)
| .++.+|.. + .+++|++|+|++|.
T Consensus 91 N-~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 N-HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp S-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred C-ccceeCHHHhccccCCCEEEeCCCC
Confidence 5 57777765 4 67888888888874
No 157
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=3.6e-11 Score=118.28 Aligned_cols=123 Identities=20% Similarity=0.251 Sum_probs=96.7
Q ss_pred CcEEecCCCC-CCccccccccCCCCcCEEecCCCCCCCcCCCcCCCCCCCEEeccCCCCCCcccccccc--cccEEEecc
Q 041551 558 LEILWLRGCL-SLVETHSTIQYLNKLEDLDLDYCISLTSLPTSIHSKHLKELSLRGCSNLKIFPEITSC--HMWRLELTK 634 (808)
Q Consensus 558 L~~L~L~~n~-~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~~~~l~~L~~L~L~~~~~l~~~p~~~~~--~L~~L~L~~ 634 (808)
|+.+.+.++. .+..+|..+..+++|++|++++| .++.+|....+++|++|++++|. +..+|..... .|+.|+|++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKISSLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCCCHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCccccccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcC
Confidence 3444444321 23445558999999999999996 57778833388999999999994 5577776554 399999999
Q ss_pred cCCeecCcccccCCcCcEEEeecCCCcccccc--cccCCCCCCEEEeecCCC
Q 041551 635 VGIKELPSSIECLSNLQYLYIWDCSELESISS--SIFKLNSLESIDISNCSN 684 (808)
Q Consensus 635 n~i~~lp~~~~~l~~L~~L~L~~n~~l~~lp~--~~~~l~~L~~L~l~~c~~ 684 (808)
|.++.+| .+..+++|+.|++++|.+ ..+|. .+..+++|++|++++|+.
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CcCCcCC-ccccCCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCcc
Confidence 9999998 689999999999999987 55443 688999999999999864
No 158
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.93 E-value=5.3e-11 Score=138.21 Aligned_cols=192 Identities=17% Similarity=0.153 Sum_probs=131.6
Q ss_pred CCceeEEEecCCCCC-Cc------------------ccCcccceEeecCCCCcccc-cchhh-cccccceeccCCCCCCC
Q 041551 489 FAEVRHLEWARCPLK-TL------------------NICAEKLVSLKMPRSKVQQL-WDDVQ-DLVNLKEIDLSRSESLT 547 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~-~l------------------~~~~~~L~~L~L~~n~l~~l-~~~~~-~l~~L~~L~L~~n~~~~ 547 (808)
+++|+.|++.+|+.. .+ ...+++|++|+|++|.+... +..+. .+++|++|+|++|...+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 467888999887621 11 22467899999999988743 34454 78999999999995444
Q ss_pred C--CCC-CCCCCCCcEEecCCCCCCcc----ccccccCCCCcCEEecCCCCCCCcCCC-----cC-CCCCCCEEeccCCC
Q 041551 548 K--LPD-LSRAKNLEILWLRGCLSLVE----THSTIQYLNKLEDLDLDYCISLTSLPT-----SI-HSKHLKELSLRGCS 614 (808)
Q Consensus 548 ~--~p~-~~~l~~L~~L~L~~n~~l~~----~p~~~~~l~~L~~L~l~~~~~l~~lp~-----~~-~l~~L~~L~L~~~~ 614 (808)
. ++. +.++++|++|+|++|..... ++.....+++|+.|++++|. ..++. .. .+++|++|++++|.
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 3 444 45799999999999963322 33334478899999999975 22321 11 46999999999996
Q ss_pred CCCccccccccc--ccEEEecccC-------------------------------CeecCcccccCCcCcEEEeecCCCc
Q 041551 615 NLKIFPEITSCH--MWRLELTKVG-------------------------------IKELPSSIECLSNLQYLYIWDCSEL 661 (808)
Q Consensus 615 ~l~~~p~~~~~~--L~~L~L~~n~-------------------------------i~~lp~~~~~l~~L~~L~L~~n~~l 661 (808)
.+..+|...... |+.|+++.+. ...+|..+..+++|+.|+|++|.+.
T Consensus 223 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~ 302 (594)
T 2p1m_B 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302 (594)
T ss_dssp CHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred cHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC
Confidence 555555444332 7777654331 1234444456789999999999853
Q ss_pred cc-ccccccCCCCCCEEEeecC
Q 041551 662 ES-ISSSIFKLNSLESIDISNC 682 (808)
Q Consensus 662 ~~-lp~~~~~l~~L~~L~l~~c 682 (808)
.. ++..+..+++|+.|++++|
T Consensus 303 ~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 303 SYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHHHHHHHTTCTTCCEEEEEGG
T ss_pred HHHHHHHHhcCCCcCEEeCcCc
Confidence 32 3334668899999999876
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.90 E-value=4.7e-09 Score=100.26 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=83.4
Q ss_pred eeEEEecCCCCCCc-ccCcccceEeecCCCCccccc-chhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCC
Q 041551 492 VRHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLW-DDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLS 568 (808)
Q Consensus 492 Lr~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~ 568 (808)
.+.++++++.+..+ ...+.+|++|+|++|.++.++ ..+.++++|++|+|++|.+....+. |.++++|++|+|++|..
T Consensus 11 ~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 45788999999888 344689999999999999885 4599999999999999986655555 78999999999999955
Q ss_pred Cccccc-cccCCCCcCEEecCCCC
Q 041551 569 LVETHS-TIQYLNKLEDLDLDYCI 591 (808)
Q Consensus 569 l~~~p~-~~~~l~~L~~L~l~~~~ 591 (808)
. .+|. .+..+++|++|+|++|.
T Consensus 91 ~-~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 91 K-SIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSC
T ss_pred C-EeCHHHhcCCCCCCEEEeCCCC
Confidence 4 5554 58999999999999975
No 160
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.85 E-value=8.8e-09 Score=98.72 Aligned_cols=103 Identities=13% Similarity=0.061 Sum_probs=84.5
Q ss_pred eEEEecCCCCCCc-ccCcccceEeecCCCCccccc-chhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCCCC
Q 041551 493 RHLEWARCPLKTL-NICAEKLVSLKMPRSKVQQLW-DDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCLSL 569 (808)
Q Consensus 493 r~L~l~~~~l~~l-~~~~~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~~l 569 (808)
+.++++++.+..+ ...+.+|+.|+|++|.+..++ ..+.++++|++|+|++|.+....+. |.++++|++|+|++|..
T Consensus 15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l- 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL- 93 (174)
T ss_dssp SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-
T ss_pred cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc-
Confidence 5788899998888 334689999999999999885 4689999999999999976554444 78999999999999954
Q ss_pred cccccc-ccCCCCcCEEecCCCCCCCcCC
Q 041551 570 VETHST-IQYLNKLEDLDLDYCISLTSLP 597 (808)
Q Consensus 570 ~~~p~~-~~~l~~L~~L~l~~~~~l~~lp 597 (808)
..+|.. +..+++|++|+|++|. +...+
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~-~~c~~ 121 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNP-WDCEC 121 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSC-BCTTB
T ss_pred ceeCHHHhccccCCCEEEeCCCC-ccccc
Confidence 456654 8999999999999964 44443
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.83 E-value=5.8e-08 Score=106.07 Aligned_cols=211 Identities=11% Similarity=0.145 Sum_probs=116.5
Q ss_pred cceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCCC--CCCCCCCcEEecCCCCCCccccccccCCCCcCEEec
Q 041551 511 KLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLPD--LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDL 587 (808)
Q Consensus 511 ~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l 587 (808)
+|+.+.+..+ ++.++.. |.++ +|+.+.|..+ +..++. |.++++|+.++|.+| .+..++.......+|+.+.|
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence 5666666544 5555443 5553 5666766652 334442 666777777777665 44455554444567777777
Q ss_pred CCCCCCCcCCCcC--CCCCCCEEeccCCCCCCccccccc--ccccEEEecccCCeecCc-ccccCCcCcEEEeecCCCc-
Q 041551 588 DYCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITS--CHMWRLELTKVGIKELPS-SIECLSNLQYLYIWDCSEL- 661 (808)
Q Consensus 588 ~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~--~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~l- 661 (808)
.. .++.++... ++++|+.+++..+ +..++.... ..|+.+.| .+.++.++. .|.++++|+.+.+.+|...
T Consensus 211 p~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 211 PV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp CT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred CC--chheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccC
Confidence 64 256665543 5666777776653 333333221 23666666 445666633 4677777777777665442
Q ss_pred ---cccc-ccccCCCCCCEEEeecCCCCccccCCCCCcCCC-CceeeecCCCCCCCCcccccccCCCccccccccccccc
Q 041551 662 ---ESIS-SSIFKLNSLESIDISNCSNLKRFLEIPSCNIDG-GFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRRSLG 736 (808)
Q Consensus 662 ---~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n~~~ 736 (808)
..++ ..|.+|++|+.+.+.+ .++.++.. .+.+ ..+..+.++.+ +..+....|..+ ++..+.+.+|...
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~---aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIPE--SIRILGQG---LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCCT--TCCEECTT---TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred CcccEECHHHhhCCccCCeEEeCC--ceEEEhhh---hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 1233 3466677777777763 24444332 2222 22334455443 444555666666 6777777666554
Q ss_pred ce
Q 041551 737 RI 738 (808)
Q Consensus 737 ~~ 738 (808)
.+
T Consensus 359 ~l 360 (401)
T 4fdw_A 359 QV 360 (401)
T ss_dssp BC
T ss_pred cc
Confidence 43
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.79 E-value=1.2e-07 Score=103.61 Aligned_cols=227 Identities=14% Similarity=0.174 Sum_probs=151.6
Q ss_pred ceeEEEecCCCCCCc---ccCcccceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCCC--CCCCCCCcEEecC
Q 041551 491 EVRHLEWARCPLKTL---NICAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLPD--LSRAKNLEILWLR 564 (808)
Q Consensus 491 ~Lr~L~l~~~~l~~l---~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~ 564 (808)
+|+.+.+..+ ++.+ .+.-.+|+.+.+.. .++.+... |.+|++|+.++|.+|. +..+|. |. ..+|+.+.|.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEe-ecccCEEEeC
Confidence 5677776554 4444 22234688888875 67777644 8888999999998875 445553 54 5888988887
Q ss_pred CCCCCcccc-ccccCCCCcCEEecCCCCCCCcCCCcC-CCCCCCEEeccCCCCCCcccccccc---cccEEEecccCCe-
Q 041551 565 GCLSLVETH-STIQYLNKLEDLDLDYCISLTSLPTSI-HSKHLKELSLRGCSNLKIFPEITSC---HMWRLELTKVGIK- 638 (808)
Q Consensus 565 ~n~~l~~~p-~~~~~l~~L~~L~l~~~~~l~~lp~~~-~l~~L~~L~L~~~~~l~~~p~~~~~---~L~~L~L~~n~i~- 638 (808)
.+ +..++ ..|.++++|+.+++.. .++.++... .-.+|+.+.+.. .+..++..... .|+.+.+.+|.+.
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred Cc--hheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccC
Confidence 54 44444 4577888899998886 367777654 337888888854 34555433222 2888888887665
Q ss_pred ----ecCc-ccccCCcCcEEEeecCCCcccccc-cccCCCCCCEEEeecCCCCccccCCCCCcCCCCceeeecCCCCCCC
Q 041551 639 ----ELPS-SIECLSNLQYLYIWDCSELESISS-SIFKLNSLESIDISNCSNLKRFLEIPSCNIDGGFAFCIVVPHCWEP 712 (808)
Q Consensus 639 ----~lp~-~~~~l~~L~~L~L~~n~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~~~~~~l~l~~~~~~ 712 (808)
.++. .|.++++|+.+.|.+ . +..++. .|.+|++|+.+.|.++ +..++. ..+.+..+..+.+.+|.++
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~~-~-i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~---~aF~~~~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIPE-S-IRILGQGLLGGNRKVTQLTIPAN--VTQINF---SAFNNTGIKEVKVEGTTPP 358 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCCT-T-CCEECTTTTTTCCSCCEEEECTT--CCEECT---TSSSSSCCCEEEECCSSCC
T ss_pred CcccEECHHHhhCCccCCeEEeCC-c-eEEEhhhhhcCCCCccEEEECcc--ccEEcH---HhCCCCCCCEEEEcCCCCc
Confidence 5644 588899999999974 3 356654 4788899999999654 555543 3344434566778888887
Q ss_pred CcccccccCCC-ccccccccccc
Q 041551 713 CETHEVFCGLK-HKSQRNLDRRS 734 (808)
Q Consensus 713 ~~~~~~f~~l~-~l~~~~l~~n~ 734 (808)
......|..++ .+..+++..+.
T Consensus 359 ~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 359 QVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp BCCCSSCCCSCTTCCEEEECGGG
T ss_pred ccccccccCCCCCccEEEeCHHH
Confidence 77777777764 44555555443
No 163
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.75 E-value=5.4e-08 Score=97.01 Aligned_cols=161 Identities=12% Similarity=0.108 Sum_probs=96.2
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEEE
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLLV 248 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~LlV 248 (808)
.+.|+|.+|+|||+||+.+++.+........++... .+...+...+...+ ....... ..-..++.+||
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~vli 107 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN--ASDERGIDVVRHKI-KEFARTA---------PIGGAPFKIIF 107 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE--TTCTTCHHHHHHHH-HHHHTSC---------CSTTCSCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEec--cccccChHHHHHHH-HHHhccc---------CCCccCceEEE
Confidence 489999999999999999998764332222222110 11112222221111 1110000 00125789999
Q ss_pred EecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchhhh-hh-cCCCeEEEecCCChhhHHHHHHHHhhcCCCCCchHHHH
Q 041551 249 FDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQVL-KN-CWAGQIYQMKELVYTDAQKLFSQYAFRGGHLDSSYTEL 324 (808)
Q Consensus 249 lDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~ 324 (808)
+||++. .+..+.+...+.....+.++|+||+..... .. ......+++++++.++..+++...+..... .-..+.
T Consensus 108 iDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~ 185 (226)
T 2chg_A 108 LDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV--KITEDG 185 (226)
T ss_dssp EETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHH
T ss_pred EeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCC--CCCHHH
Confidence 999975 344555655554445678889888866421 11 122348899999999999999887743221 123456
Q ss_pred HHHHHHHhcCchhhHHHHh
Q 041551 325 TDKAIKYAQGVPLALKVLG 343 (808)
Q Consensus 325 ~~~i~~~~~glPLal~~~~ 343 (808)
.+.+++.++|.|..+..+.
T Consensus 186 ~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 186 LEALIYISGGDFRKAINAL 204 (226)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 7788899999998655433
No 164
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.65 E-value=1e-09 Score=118.87 Aligned_cols=103 Identities=10% Similarity=0.054 Sum_probs=60.6
Q ss_pred CCceeEEEecCCCCCCc---------ccCcccceEeecCCCCcccc--cchhhcccccceeccCCCCCCCCCCC-C----
Q 041551 489 FAEVRHLEWARCPLKTL---------NICAEKLVSLKMPRSKVQQL--WDDVQDLVNLKEIDLSRSESLTKLPD-L---- 552 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l---------~~~~~~L~~L~L~~n~l~~l--~~~~~~l~~L~~L~L~~n~~~~~~p~-~---- 552 (808)
.+.|+.|++++|.+... .....+|++|+|++|.+... ..-...+++|+.|+|++|.+...... +
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45678888888877653 11336788888888877632 22234566778888888754322111 1
Q ss_pred -CCCCCCcEEecCCCCCCc----cccccccCCCCcCEEecCCCC
Q 041551 553 -SRAKNLEILWLRGCLSLV----ETHSTIQYLNKLEDLDLDYCI 591 (808)
Q Consensus 553 -~~l~~L~~L~L~~n~~l~----~~p~~~~~l~~L~~L~l~~~~ 591 (808)
...++|++|+|++|.... .++..+..+++|++|+|++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG 194 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC
Confidence 245667777777774321 133344556666666666653
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=4.6e-08 Score=105.12 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=80.1
Q ss_pred EeecCCC-CcccccchhhcccccceeccCC-CCCCCCCCC-CCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCCC
Q 041551 514 SLKMPRS-KVQQLWDDVQDLVNLKEIDLSR-SESLTKLPD-LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYC 590 (808)
Q Consensus 514 ~L~L~~n-~l~~l~~~~~~l~~L~~L~L~~-n~~~~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~ 590 (808)
.++++++ +++.+|. +..+++|+.|+|++ |.+....|. |.++++|+.|+|++|...+..|..|.+|++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4677887 8999999 99999999999996 765544444 999999999999999666556667899999999999995
Q ss_pred CCCCcCCCcC-CCCCCCEEeccCCC
Q 041551 591 ISLTSLPTSI-HSKHLKELSLRGCS 614 (808)
Q Consensus 591 ~~l~~lp~~~-~l~~L~~L~L~~~~ 614 (808)
.++.+|... ...+|+.|+|.+|.
T Consensus 91 -~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 -ALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp -CCSCCCSTTTCSCCCCEEECCSSC
T ss_pred -ccceeCHHHcccCCceEEEeeCCC
Confidence 677888755 43449999999885
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.57 E-value=4.6e-09 Score=113.72 Aligned_cols=151 Identities=16% Similarity=0.077 Sum_probs=90.5
Q ss_pred CcccceEeecCCCCccccc-chhhc-----ccccceeccCCCCCCCCCC-C-CCCCCCCcEEecCCCCCCccccccc---
Q 041551 508 CAEKLVSLKMPRSKVQQLW-DDVQD-----LVNLKEIDLSRSESLTKLP-D-LSRAKNLEILWLRGCLSLVETHSTI--- 576 (808)
Q Consensus 508 ~~~~L~~L~L~~n~l~~l~-~~~~~-----l~~L~~L~L~~n~~~~~~p-~-~~~l~~L~~L~L~~n~~l~~~p~~~--- 576 (808)
..++|+.|+|++|.+.... ..+.. .++|+.|+|++|.+..... . ...+++|+.|+|++|.........+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4568999999999988542 22332 3799999999997533222 2 3346789999999995443322222
Q ss_pred --cCCCCcCEEecCCCCCCCc-----CCCcC-CCCCCCEEeccCCCCCCcc-----ccccc--ccccEEEecccCCee--
Q 041551 577 --QYLNKLEDLDLDYCISLTS-----LPTSI-HSKHLKELSLRGCSNLKIF-----PEITS--CHMWRLELTKVGIKE-- 639 (808)
Q Consensus 577 --~~l~~L~~L~l~~~~~l~~-----lp~~~-~l~~L~~L~L~~~~~l~~~-----p~~~~--~~L~~L~L~~n~i~~-- 639 (808)
...++|+.|+|++|. ++. ++..+ .+++|++|+|++|. ++.. +.... ..|+.|+|++|.|+.
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH
T ss_pred HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH
Confidence 356889999999974 443 33323 56789999999885 2211 11111 125555555555542
Q ss_pred ---cCcccccCCcCcEEEeecCCC
Q 041551 640 ---LPSSIECLSNLQYLYIWDCSE 660 (808)
Q Consensus 640 ---lp~~~~~l~~L~~L~L~~n~~ 660 (808)
++..+...++|+.|+|++|.+
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCC
Confidence 223333445555555555544
No 167
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=3e-07 Score=97.48 Aligned_cols=159 Identities=15% Similarity=0.180 Sum_probs=94.8
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcc-cCc-eEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceE
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRH-FEG-SYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMV 245 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~-F~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~ 245 (808)
.+.|+|++|+||||+|+.+++.+... +.. .+++.. +...+...+ +.++...... ...+ .+++.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~----~~~~~~~~i-~~~~~~~~~~---------~~~~~~~~~~ 109 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA----SDDRGIDVV-RNQIKHFAQK---------KLHLPPGKHK 109 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT----TSCCSHHHH-HTHHHHHHHB---------CCCCCTTCCE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC----ccccChHHH-HHHHHHHHhc---------cccCCCCCce
Confidence 38899999999999999999976432 221 223321 111122211 1111111100 0011 34588
Q ss_pred EEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchhh-hhh-cCCCeEEEecCCChhhHHHHHHHHhhcCCCCCchH
Q 041551 246 LLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQV-LKN-CWAGQIYQMKELVYTDAQKLFSQYAFRGGHLDSSY 321 (808)
Q Consensus 246 LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~v-~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~ 321 (808)
++|+||++. .+..+.+...+.....++++|+||+...- ... ......+++.+++.++..+++...+..... .-.
T Consensus 110 viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~--~~~ 187 (323)
T 1sxj_B 110 IVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV--KYT 187 (323)
T ss_dssp EEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--CBC
T ss_pred EEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC--CCC
Confidence 999999975 34455555554444567888888876532 111 122358999999999999999887632221 123
Q ss_pred HHHHHHHHHHhcCchhh-HHHHh
Q 041551 322 TELTDKAIKYAQGVPLA-LKVLG 343 (808)
Q Consensus 322 ~~~~~~i~~~~~glPLa-l~~~~ 343 (808)
.+.++.+++.++|.|.. +..+.
T Consensus 188 ~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 188 NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Confidence 45678899999999954 44443
No 168
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.46 E-value=6.9e-08 Score=103.61 Aligned_cols=88 Identities=17% Similarity=0.114 Sum_probs=51.5
Q ss_pred ccchhhcccccceeccCCCCCCCCCCCCCCCCCCcEEecCCCCCCcccccccc--CCCCcCEEecCCCCC-------CCc
Q 041551 525 LWDDVQDLVNLKEIDLSRSESLTKLPDLSRAKNLEILWLRGCLSLVETHSTIQ--YLNKLEDLDLDYCIS-------LTS 595 (808)
Q Consensus 525 l~~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~n~~l~~~p~~~~--~l~~L~~L~l~~~~~-------l~~ 595 (808)
+...+..+++|+.|+|++|... .++.+ .+++|+.|+|..|.........+. .+++|++|+|+.+.. +..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 4444667788999999887433 23334 378899998887743332222333 678888888753211 111
Q ss_pred CCCcC---CCCCCCEEeccCCC
Q 041551 596 LPTSI---HSKHLKELSLRGCS 614 (808)
Q Consensus 596 lp~~~---~l~~L~~L~L~~~~ 614 (808)
+...+ .+++|++|+|++|.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCcCEEeCCCCC
Confidence 11111 35677777776664
No 169
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=1.7e-06 Score=91.73 Aligned_cols=156 Identities=16% Similarity=0.154 Sum_probs=94.3
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhccc-Cc-eEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHH--H-ccc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHF-EG-SYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNR--L-ARK 243 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F-~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~--L-~~~ 243 (808)
.+.|+|++|+||||+|+.+++.+.... .. .+.+... ...+...+.. . +...... + .++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~-~------------~~~~~~~~~~~~~~ 110 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNAS----DERGINVIRE-K------------VKEFARTKPIGGAS 110 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETT----CHHHHHTTHH-H------------HHHHHHSCCGGGCS
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecc----ccCchHHHHH-H------------HHHHHhhCCcCCCC
Confidence 489999999999999999999764322 11 2222211 0000000000 0 0011000 1 256
Q ss_pred eEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchhhh-hhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCCCc
Q 041551 244 MVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQVL-KNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHLDS 319 (808)
Q Consensus 244 ~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~-~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 319 (808)
+.++|+||++. .+..+.+...+.....++++|+||....-. ... .....+++.+++.++..+++...+.... ..
T Consensus 111 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~--~~ 188 (327)
T 1iqp_A 111 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG--LE 188 (327)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTT--CE
T ss_pred CeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcC--CC
Confidence 78999999975 355666665555445678888888765321 111 1124789999999999999988764322 12
Q ss_pred hHHHHHHHHHHHhcCchhhHHHHh
Q 041551 320 SYTELTDKAIKYAQGVPLALKVLG 343 (808)
Q Consensus 320 ~~~~~~~~i~~~~~glPLal~~~~ 343 (808)
-..+..+.+++.++|.|..+..+.
T Consensus 189 ~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 189 LTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp ECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 334667889999999998655443
No 170
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.44 E-value=4e-07 Score=97.74 Aligned_cols=102 Identities=19% Similarity=0.175 Sum_probs=72.7
Q ss_pred ceeccCCCCCCCCCCCCCCCCCCcEEecCC-CCCCccccccccCCCCcCEEecCCCCCCCcCCC-cC-CCCCCCEEeccC
Q 041551 536 KEIDLSRSESLTKLPDLSRAKNLEILWLRG-CLSLVETHSTIQYLNKLEDLDLDYCISLTSLPT-SI-HSKHLKELSLRG 612 (808)
Q Consensus 536 ~~L~L~~n~~~~~~p~~~~l~~L~~L~L~~-n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~lp~-~~-~l~~L~~L~L~~ 612 (808)
..++++++..+..+|.+..+++|+.|+|++ |......+..|.+|++|+.|+|++| .++.+|. .+ ++++|+.|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 356777773455677788899999999996 6444334467899999999999996 5666665 34 789999999998
Q ss_pred CCCCCccccccc-cc-ccEEEecccCCee
Q 041551 613 CSNLKIFPEITS-CH-MWRLELTKVGIKE 639 (808)
Q Consensus 613 ~~~l~~~p~~~~-~~-L~~L~L~~n~i~~ 639 (808)
|. +..+|.... .. |+.|+|.+|.+..
T Consensus 90 N~-l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SC-CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred Cc-cceeCHHHcccCCceEEEeeCCCccC
Confidence 84 445554322 22 7788888877763
No 171
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.38 E-value=9.2e-06 Score=86.04 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=124.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+.+.|+|.+|+|||++|+.+++.....| .++.. ........+...+. .. ..++.+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~~----~~~~~~~~l~~~l~----------------~~-~~~~~~ 93 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTSG----PAIEKPGDLAAILA----------------NS-LEEGDI 93 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEECT----TTCCSHHHHHHHHT----------------TT-CCTTCE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEec----cccCChHHHHHHHH----------------Hh-ccCCCE
Confidence 35688999999999999999998764322 23321 11111111111110 00 135578
Q ss_pred EEEecCCCH--HHHHHHHhccCCC------------------CCCCEEEEEeCchhhhh-hc--CCCeEEEecCCChhhH
Q 041551 247 LVFDDVNNP--RQIESLIGHLDHL------------------ASGSRVIITTRDKQVLK-NC--WAGQIYQMKELVYTDA 303 (808)
Q Consensus 247 lVlDdv~~~--~~~~~l~~~l~~~------------------~~gs~IiiTTR~~~v~~-~~--~~~~~~~l~~L~~~ea 303 (808)
|+||+++.. ...+.+...+... .++.++|.||....... .. .....+.+++++.+|.
T Consensus 94 l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~ 173 (324)
T 1hqc_A 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEEL 173 (324)
T ss_dssp EEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHH
T ss_pred EEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHH
Confidence 999999763 3334443332211 12456777666543211 11 1235889999999999
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhhcC---------CCHHHHHHHHhhhhcCcchhHHHHHH
Q 041551 304 QKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYLCG---------RSKEEWESAMRKLEIIPHVEIQEVLK 374 (808)
Q Consensus 304 ~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L~~---------~~~~~w~~~l~~l~~~~~~~i~~~l~ 374 (808)
.+++...+..... .-..+..+.++++++|.|-.+..+...+.. -+.+....++.. +.
T Consensus 174 ~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~------------~~ 239 (324)
T 1hqc_A 174 AQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA------------LG 239 (324)
T ss_dssp HHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH------------HT
T ss_pred HHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH------------hc
Confidence 9999887743222 223466788999999999887665543321 123333333222 22
Q ss_pred HhhcCCcHHHHHHHhhhhhccCC--cchhHHHHHHhhcCCcchhhhhh-hhcccceeeecCC
Q 041551 375 ISYDSLDDSQKNIFLDIACFLEG--EHRDKVISFFDASGLEAKIELSV-LEGKSLINLDVFD 433 (808)
Q Consensus 375 ~sy~~L~~~~k~~fl~la~fp~~--~~~~~l~~~~~~~g~~~~~~l~~-L~~~sLi~~~~~~ 433 (808)
..+..+++.++..+..+.....+ .....+...++.........++. +++.++++....+
T Consensus 240 ~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g 301 (324)
T 1hqc_A 240 LDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRG 301 (324)
T ss_dssp CCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTE
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCcc
Confidence 23456777777777766644332 23444444332111111111232 6677888765433
No 172
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.31 E-value=2.6e-07 Score=99.15 Aligned_cols=154 Identities=14% Similarity=0.118 Sum_probs=94.0
Q ss_pred cchhhcccccceeccCCCCCC---------CCCCC-CCCCCCCcEEecCCCCCCccccccccCCCCcCEEecCCCCCCCc
Q 041551 526 WDDVQDLVNLKEIDLSRSESL---------TKLPD-LSRAKNLEILWLRGCLSLVETHSTIQYLNKLEDLDLDYCISLTS 595 (808)
Q Consensus 526 ~~~~~~l~~L~~L~L~~n~~~---------~~~p~-~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~L~l~~~~~l~~ 595 (808)
...+..+++|+.|.+.++... ..++. +..+|+|+.|.|++|... .++. + .+++|++|+|..|. +..
T Consensus 132 ~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~-l~~ 207 (362)
T 2ra8_A 132 VENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG-LPD 207 (362)
T ss_dssp HTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB-CCH
T ss_pred HHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC-CCh
Confidence 344567788888887654211 11223 567899999999988433 3443 4 38899999998764 321
Q ss_pred CC-CcC---CCCCCCEEeccCCCC-------CCcccccc----cccccEEEecccCCee-cCccc---ccCCcCcEEEee
Q 041551 596 LP-TSI---HSKHLKELSLRGCSN-------LKIFPEIT----SCHMWRLELTKVGIKE-LPSSI---ECLSNLQYLYIW 656 (808)
Q Consensus 596 lp-~~~---~l~~L~~L~L~~~~~-------l~~~p~~~----~~~L~~L~L~~n~i~~-lp~~~---~~l~~L~~L~L~ 656 (808)
-. ..+ .+++|+.|+|+.+.. +..+.... ...|+.|+|.+|.+.. .+..+ ..+++|+.|+|+
T Consensus 208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 11 111 578999999864211 11111111 2248888888887762 12222 347788888888
Q ss_pred cCCCcc----cccccccCCCCCCEEEeecCC
Q 041551 657 DCSELE----SISSSIFKLNSLESIDISNCS 683 (808)
Q Consensus 657 ~n~~l~----~lp~~~~~l~~L~~L~l~~c~ 683 (808)
.|.+.. .++..+..+++|+.|++++|.
T Consensus 288 ~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 776533 244445567888888888774
No 173
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.29 E-value=9.1e-07 Score=89.27 Aligned_cols=151 Identities=14% Similarity=0.183 Sum_probs=89.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+.+.|+|.+|+||||||+.+++..........|+.... .... + . +.+ +.+ .++.+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~-~~~~--~--------~--------~~~----~~~-~~~~v 107 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI-HASI--S--------T--------ALL----EGL-EQFDL 107 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG-GGGS--C--------G--------GGG----TTG-GGSSE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH-HHHH--H--------H--------HHH----Hhc-cCCCE
Confidence 456889999999999999999997765544556665311 1000 0 0 000 011 35678
Q ss_pred EEEecCCCHH--H--HHHHHhccCCC-CCCC-EEEEEeCchh---------hhhhcCCCeEEEecCCChhhHHHHHHHHh
Q 041551 247 LVFDDVNNPR--Q--IESLIGHLDHL-ASGS-RVIITTRDKQ---------VLKNCWAGQIYQMKELVYTDAQKLFSQYA 311 (808)
Q Consensus 247 lVlDdv~~~~--~--~~~l~~~l~~~-~~gs-~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 311 (808)
||+||++... . .+.+...+... ..+. ++|+||+... +...+.....+++++++.++..+++...+
T Consensus 108 liiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~ 187 (242)
T 3bos_A 108 ICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRA 187 (242)
T ss_dssp EEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHH
T ss_pred EEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHH
Confidence 9999986431 1 22232221110 1222 4788776432 11111223689999999999999998877
Q ss_pred hcCCCCCchHHHHHHHHHHHhcCchhhHHHHh
Q 041551 312 FRGGHLDSSYTELTDKAIKYAQGVPLALKVLG 343 (808)
Q Consensus 312 ~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 343 (808)
..... .-..+..+.+++.++|.+-.+..+.
T Consensus 188 ~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 188 AMRGL--QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHTTC--CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHcCC--CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 43221 2234567788889999876665433
No 174
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.26 E-value=2.8e-06 Score=93.84 Aligned_cols=158 Identities=13% Similarity=0.179 Sum_probs=94.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCc--eEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEG--SYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~--~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~ 244 (808)
...+.|+|.+|+||||||+.+++.+...++. .+++... .+...+...+... ....+.+.+..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~----------~~~~~~~~~~~~~----~~~~~~~~~~~~~ 195 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE----------KFLNDLVDSMKEG----KLNEFREKYRKKV 195 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH----------HHHHHHHHHHHTT----CHHHHHHHHTTTC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH----------HHHHHHHHHHHcc----cHHHHHHHhcCCC
Confidence 4568899999999999999999987666533 3444421 1222222222211 2233444444467
Q ss_pred EEEEEecCCCH----HHHHHHHhccCC-CCCCCEEEEEeCchh---------hhhhcCCCeEEEecCCChhhHHHHHHHH
Q 041551 245 VLLVFDDVNNP----RQIESLIGHLDH-LASGSRVIITTRDKQ---------VLKNCWAGQIYQMKELVYTDAQKLFSQY 310 (808)
Q Consensus 245 ~LlVlDdv~~~----~~~~~l~~~l~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 310 (808)
-+|+|||++.. ...+.+...+.. ...|..||+||.+.. +...+....++.+++++.++-.+++...
T Consensus 196 ~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 196 DILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp SEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 79999999642 223333333211 135778999888632 2222233357889999999999999887
Q ss_pred hhcCCCCCchHHHHHHHHHHHhcCchhhHH
Q 041551 311 AFRGGHLDSSYTELTDKAIKYAQGVPLALK 340 (808)
Q Consensus 311 ~~~~~~~~~~~~~~~~~i~~~~~glPLal~ 340 (808)
+...... -..+....|++.++|.+-.+.
T Consensus 276 ~~~~~~~--i~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 276 LEIEHGE--LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHTCC--CCTTHHHHHHHHCCSCHHHHH
T ss_pred HHHcCCC--CCHHHHHHHHHhcCCCHHHHH
Confidence 6422211 112346678888888876544
No 175
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.21 E-value=1.5e-05 Score=83.99 Aligned_cols=154 Identities=10% Similarity=0.109 Sum_probs=93.7
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhc-ccCc-eEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHH--H-ccc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISR-HFEG-SYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNR--L-ARK 243 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~-~F~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~--L-~~~ 243 (808)
.+.++|.+|+|||++|+.+++.+.. .+.. .+.+.... ......+.... ...... + .++
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~~~ 102 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD-ERGIDVVRHKI----------------KEFARTAPIGGAP 102 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS-TTCTTTSSHHH----------------HHHHHSCCSSSCC
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc-ccChHHHHHHH----------------HHHHhcCCCCCCC
Confidence 3889999999999999999987532 2211 12222110 00000111111 111101 1 256
Q ss_pred eEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchh-hhhh-cCCCeEEEecCCChhhHHHHHHHHhhcCCCCCc
Q 041551 244 MVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQ-VLKN-CWAGQIYQMKELVYTDAQKLFSQYAFRGGHLDS 319 (808)
Q Consensus 244 ~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 319 (808)
+.++|+|+++. .+..+.+...+.....++++|+||.... +... ......+++.+++.++..+++...+..... .
T Consensus 103 ~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~--~ 180 (319)
T 2chq_A 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV--K 180 (319)
T ss_dssp CEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC--C
T ss_pred ceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC--C
Confidence 78999999975 4556677777666566788888886653 1111 122358899999999999999887743221 2
Q ss_pred hHHHHHHHHHHHhcCchhhHHH
Q 041551 320 SYTELTDKAIKYAQGVPLALKV 341 (808)
Q Consensus 320 ~~~~~~~~i~~~~~glPLal~~ 341 (808)
-..+..+.+++.++|.+..+..
T Consensus 181 i~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 181 ITEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp BCHHHHHHHHHTTTTCHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHH
Confidence 2345677888899998876543
No 176
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.20 E-value=7.7e-06 Score=88.50 Aligned_cols=165 Identities=14% Similarity=0.154 Sum_probs=96.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhh-------Hhc--CcccccHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSD-------VLN--DRILRDVRSQLN 238 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~-------~~~--~~~~~~~~~l~~ 238 (808)
+.+.|+|.+|+||||+|+.+++......... ... .. .... ...+... +.. ....+.++.+.+
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~----~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP----CG---VCDN-CREIEQGRFVDLIEIDAASRTKVEDTRDLLD 109 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC----CS---SSHH-HHHHHTSCCSSCEEEETTCSCCSSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC----Cc---ccHH-HHHHhccCCCceEEecccccCCHHHHHHHHH
Confidence 4678999999999999999998764322100 000 00 0000 0000000 000 001123344444
Q ss_pred HH-----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchh-hhhh-cCCCeEEEecCCChhhHHHHHHH
Q 041551 239 RL-----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQ-VLKN-CWAGQIYQMKELVYTDAQKLFSQ 309 (808)
Q Consensus 239 ~L-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~ 309 (808)
.+ .+++.++|+||++. .+..+.+...+.....+..+|++|.... +... ......+++.+++.++..+++..
T Consensus 110 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~ 189 (373)
T 1jr3_A 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 (373)
T ss_dssp HTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred HHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHH
Confidence 43 24578999999974 4556667666655455677777776543 1111 12236889999999999999987
Q ss_pred HhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHh
Q 041551 310 YAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLG 343 (808)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 343 (808)
.+-.... .-..+....+++.++|.|..+..+.
T Consensus 190 ~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 190 ILNEEHI--AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 7632211 2234567789999999998776554
No 177
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.13 E-value=5.2e-05 Score=78.01 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=78.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHH-HHHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQL-NRLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~-~~L~~~~~ 245 (808)
.+.+.|+|.+|+|||+||+.+++.....| +.+....... ........ ..+..+. .....+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~~-g~~~~~~~-------------~~~~~~~~~~~~~~~~ 126 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKMI-GFSETAKC-------------QAMKKIFDDAYKSQLS 126 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGCT-TCCHHHHH-------------HHHHHHHHHHHTSSEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHhc-CCchHHHH-------------HHHHHHHHHHHhcCCc
Confidence 56789999999999999999998753322 1222111000 00000000 0111111 12235678
Q ss_pred EEEEecCCCH------------HHHHHHHhccCC---CCCCCEEEEEeCchhhhhhc----CCCeEEEecCCCh-hhHHH
Q 041551 246 LLVFDDVNNP------------RQIESLIGHLDH---LASGSRVIITTRDKQVLKNC----WAGQIYQMKELVY-TDAQK 305 (808)
Q Consensus 246 LlVlDdv~~~------------~~~~~l~~~l~~---~~~gs~IiiTTR~~~v~~~~----~~~~~~~l~~L~~-~ea~~ 305 (808)
+|+||+++.. ..++.+...+.. .+....||.||...+..... .....+.+++++. ++-.+
T Consensus 127 vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~ 206 (272)
T 1d2n_A 127 CVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLE 206 (272)
T ss_dssp EEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHH
T ss_pred EEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHH
Confidence 9999998643 223444333322 22334467777776544331 1246788999988 55555
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCc
Q 041551 306 LFSQYAFRGGHLDSSYTELTDKAIKYAQGV 335 (808)
Q Consensus 306 Lf~~~~~~~~~~~~~~~~~~~~i~~~~~gl 335 (808)
++.... . -..+....+++.+.|.
T Consensus 207 i~~~~~----~---~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 207 ALELLG----N---FKDKERTTIAQQVKGK 229 (272)
T ss_dssp HHHHHT----C---SCHHHHHHHHHHHTTS
T ss_pred HHHhcC----C---CCHHHHHHHHHHhcCC
Confidence 554421 1 1234567788888773
No 178
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.09 E-value=7.3e-05 Score=79.59 Aligned_cols=230 Identities=13% Similarity=0.117 Sum_probs=123.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+.|.|+|.+|+|||+||+.++++....| +.+.. ........+. ..... ..+..+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~~----~~~~~~~~~~-----------------~~~~~-~~~~~v 109 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANI---KTTAA----PMIEKSGDLA-----------------AILTN-LSEGDI 109 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEEG----GGCCSHHHHH-----------------HHHHT-CCTTCE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEecc----hhccchhHHH-----------------HHHHh-ccCCCE
Confidence 44588999999999999999988764432 22221 1111111111 11111 235678
Q ss_pred EEEecCCC--HHHHHHHHhccCCCC------------------CCCEEEEEeCchhhhh-h--cCCCeEEEecCCChhhH
Q 041551 247 LVFDDVNN--PRQIESLIGHLDHLA------------------SGSRVIITTRDKQVLK-N--CWAGQIYQMKELVYTDA 303 (808)
Q Consensus 247 lVlDdv~~--~~~~~~l~~~l~~~~------------------~gs~IiiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea 303 (808)
|+||+++. .+..+.+...+.... ++..+|.||....... . -.....+.+++++.++.
T Consensus 110 l~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~ 189 (338)
T 3pfi_A 110 LFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSEL 189 (338)
T ss_dssp EEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHH
T ss_pred EEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHH
Confidence 99999975 344444444332211 1245666665533211 1 12346899999999999
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhh------cCC---CHHHHHHHHhhhhcCcchhHHHHHH
Q 041551 304 QKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYL------CGR---SKEEWESAMRKLEIIPHVEIQEVLK 374 (808)
Q Consensus 304 ~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L------~~~---~~~~w~~~l~~l~~~~~~~i~~~l~ 374 (808)
.+++...+.... ..-..+..+.+++.++|.|-.+..+...+ .+. +.+.....+. .+.
T Consensus 190 ~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~------------~~~ 255 (338)
T 3pfi_A 190 ALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALN------------SLG 255 (338)
T ss_dssp HHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH------------HHT
T ss_pred HHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHH------------HhC
Confidence 999988774322 22334567788888999986554433221 011 2222222222 122
Q ss_pred HhhcCCcHHHHHHHhhhhhccCCc--chhHHHHHHhhcCCcchhhhh-hhhcccceeeecCCeEE
Q 041551 375 ISYDSLDDSQKNIFLDIACFLEGE--HRDKVISFFDASGLEAKIELS-VLEGKSLINLDVFDQIR 436 (808)
Q Consensus 375 ~sy~~L~~~~k~~fl~la~fp~~~--~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~~~~~~~ 436 (808)
.+...++..++..+..++-. .+. ....+...+..........++ .|++.++|.....++..
T Consensus 256 ~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g~~~ 319 (338)
T 3pfi_A 256 VNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIA 319 (338)
T ss_dssp CCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTEEEE
T ss_pred CcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCcccc
Confidence 33445666666666666655 332 244444444322111222344 78888998777555543
No 179
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.06 E-value=1.8e-05 Score=83.79 Aligned_cols=153 Identities=14% Similarity=0.148 Sum_probs=87.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
...+.|+|++|+||||||+.+++.....-...+++... .+...+...+.. .....+.+.+. +..+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~----------~~~~~~~~~~~~----~~~~~~~~~~~-~~~v 101 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD----------DFAQAMVEHLKK----GTINEFRNMYK-SVDL 101 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH----------HHHHHHHHHHHH----TCHHHHHHHHH-TCSE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH----------HHHHHHHHHHHc----CcHHHHHHHhc-CCCE
Confidence 34588999999999999999999765432234444421 112222222211 11223333332 3679
Q ss_pred EEEecCCCHH----HHHHHHhccCC-CCCCCEEEEEeCchh---------hhhhcCCCeEEEecCCChhhHHHHHHHHhh
Q 041551 247 LVFDDVNNPR----QIESLIGHLDH-LASGSRVIITTRDKQ---------VLKNCWAGQIYQMKELVYTDAQKLFSQYAF 312 (808)
Q Consensus 247 lVlDdv~~~~----~~~~l~~~l~~-~~~gs~IiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 312 (808)
|++||++... ..+.+...+.. ...|.+||+||.... +...+....++++++ +.++..+++...+.
T Consensus 102 L~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 102 LLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred EEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 9999986432 22333222211 134667888886432 112222336789999 99999999988874
Q ss_pred cCCCCCchHHHHHHHHHHHhcCchhh
Q 041551 313 RGGHLDSSYTELTDKAIKYAQGVPLA 338 (808)
Q Consensus 313 ~~~~~~~~~~~~~~~i~~~~~glPLa 338 (808)
.... .-..+..+.+++.+ |..-.
T Consensus 181 ~~~~--~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 181 EFNL--ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HTTC--CCCHHHHHHHHHHC-SSHHH
T ss_pred hcCC--CCCHHHHHHHHHhC-CCHHH
Confidence 3222 22245567788888 66543
No 180
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.00 E-value=1e-05 Score=84.04 Aligned_cols=153 Identities=17% Similarity=0.199 Sum_probs=83.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHH-HccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNR-LARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~-L~~~~~ 245 (808)
.+-+.|+|.+|+|||+||+.+++.....| +.+.. ...... ..... ...+..+... ....+.
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~~-~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~~~ 112 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETNATF---IRVVG-SELVKK-FIGEG-------------ASLVKDIFKLAKEKAPS 112 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEEG-GGGCCC-STTHH-------------HHHHHHHHHHHHHTCSE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeh-HHHHHh-ccchH-------------HHHHHHHHHHHHHcCCe
Confidence 45588999999999999999998764432 22221 110000 00000 0111112222 234568
Q ss_pred EEEEecCCCH----------------HHHHHHHhccC--CCCCCCEEEEEeCchhhhhh-----cCCCeEEEecCCChhh
Q 041551 246 LLVFDDVNNP----------------RQIESLIGHLD--HLASGSRVIITTRDKQVLKN-----CWAGQIYQMKELVYTD 302 (808)
Q Consensus 246 LlVlDdv~~~----------------~~~~~l~~~l~--~~~~gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~e 302 (808)
+|+||+++.. ..+..+...+. ....+..||.||...+.... ......+.++..+.++
T Consensus 113 vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 192 (285)
T 3h4m_A 113 IIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG 192 (285)
T ss_dssp EEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHH
T ss_pred EEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHH
Confidence 9999999653 12333333322 12345667778775533221 1223578999999999
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHhcC-chhhHH
Q 041551 303 AQKLFSQYAFRGGHLDSSYTELTDKAIKYAQG-VPLALK 340 (808)
Q Consensus 303 a~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLal~ 340 (808)
..+++...+........ .....+++.+.| .|-.|.
T Consensus 193 r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 193 RLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp HHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHHH
Confidence 99999887743222111 113556666666 343444
No 181
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=0.00021 Score=76.35 Aligned_cols=165 Identities=10% Similarity=0.130 Sum_probs=90.4
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhc--ccCce-EEEecchhhhhccCHHHHHHHHHhhHhcCcccccHH-HHHHHHccceE
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISR--HFEGS-YFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVR-SQLNRLARKMV 245 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~--~F~~~-~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~-~l~~~L~~~~~ 245 (808)
+.|+|++|+||||+|+.+++.+.. .+... ..+.. +...+...+... .............. .....-..++-
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA----SDERGISIVREK-VKNFARLTVSKPSKHDLENYPCPPYK 135 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECS----SSCCCHHHHTTH-HHHHHHSCCCCCCTTHHHHSCCCSCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcc----ccccchHHHHHH-HHHHhhhcccccchhhcccCCCCCce
Confidence 889999999999999999987542 12222 22221 111222222111 11111000000000 00001123557
Q ss_pred EEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCCCchH
Q 041551 246 LLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHLDSSY 321 (808)
Q Consensus 246 LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~ 321 (808)
++++|+++. ....+.+...+.......++|++|.... +.... .....+.+.+++.++..+.+...+..... .-.
T Consensus 136 vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~--~i~ 213 (353)
T 1sxj_D 136 IIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENV--KCD 213 (353)
T ss_dssp EEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTC--CCC
T ss_pred EEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCC--CCC
Confidence 999999874 3444555554443345667777775443 21111 11247899999999999999887633221 223
Q ss_pred HHHHHHHHHHhcCchhhHHH
Q 041551 322 TELTDKAIKYAQGVPLALKV 341 (808)
Q Consensus 322 ~~~~~~i~~~~~glPLal~~ 341 (808)
.+..+.|++.++|.|-.+..
T Consensus 214 ~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 214 DGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp HHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHH
Confidence 46678899999999876443
No 182
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.97 E-value=0.0001 Score=77.72 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=85.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~ 245 (808)
.+-|.|+|.+|+|||+||+++++.....| +.+.. . .+. ....+. ....+..+.+.. ..++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~~-~---------~l~----~~~~g~-~~~~~~~~f~~a~~~~~~ 112 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTF---FSVSS-S---------DLV----SKWMGE-SEKLVKQLFAMARENKPS 112 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEEH-H---------HHH----TTTGGG-HHHHHHHHHHHHHHTSSE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEch-H---------HHh----hcccch-HHHHHHHHHHHHHhcCCe
Confidence 45689999999999999999998764432 22221 1 111 110000 001122222222 34668
Q ss_pred EEEEecCCCH-------------HHHHHHHhccC---CCCCCCEEEEEeCchhhhhh---cCCCeEEEecCCChhhHHHH
Q 041551 246 LLVFDDVNNP-------------RQIESLIGHLD---HLASGSRVIITTRDKQVLKN---CWAGQIYQMKELVYTDAQKL 306 (808)
Q Consensus 246 LlVlDdv~~~-------------~~~~~l~~~l~---~~~~gs~IiiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~L 306 (808)
+|+||+++.. .....++..+. ....+..||.||...+.... -.....+.++..+.++-.++
T Consensus 113 vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~i 192 (322)
T 3eie_A 113 IIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTM 192 (322)
T ss_dssp EEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHH
T ss_pred EEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHH
Confidence 9999999742 11333333332 22345556667765432211 02346778889999999999
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHhcCc-hhhHHHH
Q 041551 307 FSQYAFRGGHLDSSYTELTDKAIKYAQGV-PLALKVL 342 (808)
Q Consensus 307 f~~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~ 342 (808)
+..++.... ..........+++.+.|. +-.|..+
T Consensus 193 l~~~~~~~~--~~~~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 193 FEINVGDTP--CVLTKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp HHHHHTTCC--CCCCHHHHHHHHHTTTTCCHHHHHHH
T ss_pred HHHHhccCC--CCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 998774322 111234456777777763 4344433
No 183
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.95 E-value=7.2e-05 Score=79.41 Aligned_cols=152 Identities=15% Similarity=0.144 Sum_probs=95.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccC---------------------ceEEEecchhhhhccCHHHHHHHHHhhHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFE---------------------GSYFAQNVREAEETGGIKDLQKELLSDVL 225 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~---------------------~~~~~~~~~~~~~~~~~~~l~~~ll~~~~ 225 (808)
.+.+.++|..|+|||++|+.+++.+..... ...++... +.+...+.
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~~~~~~i------------ 90 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE-KGKNTLGV------------ 90 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC-TTCSSBCH------------
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc-ccCCCCCH------------
Confidence 456889999999999999999987643221 11222100 00000111
Q ss_pred cCcccccHHHHHHHH-----ccceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEec
Q 041551 226 NDRILRDVRSQLNRL-----ARKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMK 296 (808)
Q Consensus 226 ~~~~~~~~~~l~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~ 296 (808)
+.++.+.+.+ .+++-++|+|+++. .+..+.++..+.....++.+|++|.+.+ +.... .....++++
T Consensus 91 -----~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~ 165 (334)
T 1a5t_A 91 -----DAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLA 165 (334)
T ss_dssp -----HHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred -----HHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCC
Confidence 1222333332 24678899999985 4556777777766566777777776653 32221 233689999
Q ss_pred CCChhhHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHh
Q 041551 297 ELVYTDAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLG 343 (808)
Q Consensus 297 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~ 343 (808)
+++.++..+.+.... .-..+.+..+++.++|.|..+..+.
T Consensus 166 ~~~~~~~~~~L~~~~-------~~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 166 PPPEQYAVTWLSREV-------TMSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp CCCHHHHHHHHHHHC-------CCCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred CCCHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 999999999988775 1123456788999999997665443
No 184
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=5.8e-05 Score=85.18 Aligned_cols=165 Identities=15% Similarity=0.207 Sum_probs=88.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCccc-ccHHHHHHH--Hccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRIL-RDVRSQLNR--LARK 243 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~-~~~~~l~~~--L~~~ 243 (808)
.+.+.|+|++|+||||+|+.+++... ++ .+.+.. +..... .+....+......... .......+. ..++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in~----s~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQNA----SDVRSK-TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGK 148 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEECT----TSCCCH-HHHHHTGGGGTTBCCSTTTTTC----CCSSTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEeC----CCcchH-HHHHHHHHHHhccccHHHHHhhhhhhhhccCC
Confidence 56899999999999999999998762 21 222321 111221 1222222222111111 111111001 1357
Q ss_pred eEEEEEecCCCH-----HHHHHHHhccCCCCCCCEEEEEeCchh---hhhhcCCCeEEEecCCChhhHHHHHHHHhhcCC
Q 041551 244 MVLLVFDDVNNP-----RQIESLIGHLDHLASGSRVIITTRDKQ---VLKNCWAGQIYQMKELVYTDAQKLFSQYAFRGG 315 (808)
Q Consensus 244 ~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~IiiTTR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 315 (808)
+.+||+|+++.. ..+..+...+.. .+..||+++.... +.........+.+++++.++..+.+...+....
T Consensus 149 ~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~ 226 (516)
T 1sxj_A 149 HFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREK 226 (516)
T ss_dssp SEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 789999999642 123333333221 2344666554432 222122346789999999999999887764322
Q ss_pred CCCchHHHHHHHHHHHhcC-chhhHHHHh
Q 041551 316 HLDSSYTELTDKAIKYAQG-VPLALKVLG 343 (808)
Q Consensus 316 ~~~~~~~~~~~~i~~~~~g-lPLal~~~~ 343 (808)
... ..+....|++.++| ++-|+..+.
T Consensus 227 ~~i--~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 227 FKL--DPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CCC--CTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred CCC--CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 211 12346788889988 455555543
No 185
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.91 E-value=0.00017 Score=77.15 Aligned_cols=157 Identities=16% Similarity=0.132 Sum_probs=84.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~ 245 (808)
.+-|.|+|++|+|||+||+++++.....| +.+.. . .+ .....+. ....+..+.... ..++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~~-~---------~l----~~~~~g~-~~~~~~~~f~~a~~~~~~ 145 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTF---FSVSS-S---------DL----VSKWMGE-SEKLVKQLFAMARENKPS 145 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEEH-H---------HH----HSCC----CHHHHHHHHHHHHHTSSE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCE---EEeeH-H---------HH----hhhhcch-HHHHHHHHHHHHHHcCCe
Confidence 45588999999999999999999764322 12221 1 11 0110010 011122222222 35678
Q ss_pred EEEEecCCCHH-------------HHHHHHhccC---CCCCCCEEEEEeCchhhhh-h--cCCCeEEEecCCChhhHHHH
Q 041551 246 LLVFDDVNNPR-------------QIESLIGHLD---HLASGSRVIITTRDKQVLK-N--CWAGQIYQMKELVYTDAQKL 306 (808)
Q Consensus 246 LlVlDdv~~~~-------------~~~~l~~~l~---~~~~gs~IiiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~L 306 (808)
+|+||+++... ....++..+. ....+..||.||...+... . -.....+.++..+.++-.++
T Consensus 146 vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~i 225 (355)
T 2qp9_X 146 IIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTM 225 (355)
T ss_dssp EEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHH
T ss_pred EEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHH
Confidence 99999997531 1333333322 1233455565666543211 1 13446778999999999999
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHhcCc-hhhHHHHh
Q 041551 307 FSQYAFRGGHLDSSYTELTDKAIKYAQGV-PLALKVLG 343 (808)
Q Consensus 307 f~~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~~ 343 (808)
+..++..... .........|++.+.|. +-.|..+.
T Consensus 226 l~~~l~~~~~--~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 226 FEINVGDTPS--VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHTTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHhhCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9887732221 11234567788888774 43444433
No 186
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.91 E-value=4.8e-05 Score=77.64 Aligned_cols=152 Identities=18% Similarity=0.208 Sum_probs=81.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHH-HHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLN-RLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~-~L~~~~~ 245 (808)
.+-|.|+|.+|+|||++|+.+++.....| +.+....-.....+. ....+..+.+ .....+.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~~~~~~~~~~~~---------------~~~~~~~~~~~a~~~~~~ 100 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMAGAEFVEVIGGL---------------GAARVRSLFKEARARAPC 100 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEETTTTSSSSTTH---------------HHHHHHHHHHHHHHTCSE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCE---EEechHHHHhhccCh---------------hHHHHHHHHHHHHhcCCe
Confidence 45578999999999999999998764332 222211000000000 0011111111 2234578
Q ss_pred EEEEecCCCH-----------------HHHHHHHhccCCC--CCCCEEEEEeCchhhhhh-c----CCCeEEEecCCChh
Q 041551 246 LLVFDDVNNP-----------------RQIESLIGHLDHL--ASGSRVIITTRDKQVLKN-C----WAGQIYQMKELVYT 301 (808)
Q Consensus 246 LlVlDdv~~~-----------------~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ 301 (808)
+|+||+++.. ..+..++..+... ..+..||.||........ . .....+.++..+.+
T Consensus 101 vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~ 180 (262)
T 2qz4_A 101 IVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180 (262)
T ss_dssp EEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHH
T ss_pred EEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHH
Confidence 9999999864 1233444333221 234556667765442211 1 23467889999999
Q ss_pred hHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchh
Q 041551 302 DAQKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPL 337 (808)
Q Consensus 302 ea~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPL 337 (808)
+-.+++...+..... ..........+++.+.|.+-
T Consensus 181 ~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 181 ERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp HHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCH
T ss_pred HHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCH
Confidence 999999887643222 22222234667777777643
No 187
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.90 E-value=9e-05 Score=77.73 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=75.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccC----ceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHc-
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFE----GSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLA- 241 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~----~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~- 241 (808)
...+.|+|.+|+|||++|+.+++.+..... ..+.+.. ... .....+ .....+...+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~-~~l-------------~~~~~g----~~~~~~~~~~~~ 128 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR-DDL-------------VGQYIG----HTAPKTKEVLKR 128 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG-GGT-------------CCSSTT----CHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH-HHh-------------hhhccc----ccHHHHHHHHHh
Confidence 456899999999999999999986644221 2222221 100 000000 00111111111
Q ss_pred cceEEEEEecCC-----------CHHHHHHHHhccCCCCCCCEEEEEeCchhhhhh------c--CCCeEEEecCCChhh
Q 041551 242 RKMVLLVFDDVN-----------NPRQIESLIGHLDHLASGSRVIITTRDKQVLKN------C--WAGQIYQMKELVYTD 302 (808)
Q Consensus 242 ~~~~LlVlDdv~-----------~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~------~--~~~~~~~l~~L~~~e 302 (808)
.+..+|+||+++ +.+.+..+...+.....+..||.||........ . .....+.+++++.++
T Consensus 129 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~ 208 (309)
T 3syl_A 129 AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEE 208 (309)
T ss_dssp HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHH
T ss_pred cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHH
Confidence 134599999997 445566666665555566778888864322110 0 123688999999999
Q ss_pred HHHHHHHHhh
Q 041551 303 AQKLFSQYAF 312 (808)
Q Consensus 303 a~~Lf~~~~~ 312 (808)
-.+++...+.
T Consensus 209 ~~~il~~~l~ 218 (309)
T 3syl_A 209 LFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988774
No 188
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.89 E-value=0.00026 Score=76.26 Aligned_cols=92 Identities=11% Similarity=-0.004 Sum_probs=57.4
Q ss_pred eEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCc-----------------hhhhhhcCCCeEEEecCCChhhHH
Q 041551 244 MVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRD-----------------KQVLKNCWAGQIYQMKELVYTDAQ 304 (808)
Q Consensus 244 ~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~-----------------~~v~~~~~~~~~~~l~~L~~~ea~ 304 (808)
+.+|+||+++. .+..+.+...+...... .++++|.. +.+... ...+.+++++.++..
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR---~~~i~~~~~~~~e~~ 265 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR---LLIVSTTPYSEKDTK 265 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT---EEEEEECCCCHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh---ccEEEecCCCHHHHH
Confidence 35999999975 34556666655443333 34444431 112221 245799999999999
Q ss_pred HHHHHHhhcCCCCCchHHHHHHHHHHHhc-CchhhHHH
Q 041551 305 KLFSQYAFRGGHLDSSYTELTDKAIKYAQ-GVPLALKV 341 (808)
Q Consensus 305 ~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~-glPLal~~ 341 (808)
+++...+-... ..-..+..+.+++.+. |.|-.+..
T Consensus 266 ~il~~~~~~~~--~~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 266 QILRIRCEEED--VEMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHHHHHHHTT--CCBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHHHhcCCCHHHHHH
Confidence 99998774322 2233456788888887 77765543
No 189
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.0002 Score=74.48 Aligned_cols=139 Identities=8% Similarity=0.140 Sum_probs=78.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccC-------ceEEEecchhhhhccCHHHHHHHHHhhHhcCcc--c---ccHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFE-------GSYFAQNVREAEETGGIKDLQKELLSDVLNDRI--L---RDVR 234 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~-------~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~--~---~~~~ 234 (808)
.+.+.|+|++|.|||++|+.+++++..... ..+++... .......+...+..++.+... . +.+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~----~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~ 120 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL----ELAGMDALYEKIWFAISKENLCGDISLEALN 120 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT----CCC--HHHHHHHHHHHSCCC--CCCCHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc----ccCCHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 567899999999999999999997754221 23444432 223334455555555544321 1 2233
Q ss_pred HHHHHH---ccceEEEEEecCCCH---HHHHHHHhccCCCCCCCE--EEEEeCchhh----h-----hhcCCCeEEEecC
Q 041551 235 SQLNRL---ARKMVLLVFDDVNNP---RQIESLIGHLDHLASGSR--VIITTRDKQV----L-----KNCWAGQIYQMKE 297 (808)
Q Consensus 235 ~l~~~L---~~~~~LlVlDdv~~~---~~~~~l~~~l~~~~~gs~--IiiTTR~~~v----~-----~~~~~~~~~~l~~ 297 (808)
.+.+.+ .+++++++||+++.. +.+-.+.... . ..+++ ||.++...+. . ..+ ....+..++
T Consensus 121 ~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~-~-~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~-~~~~i~F~p 197 (318)
T 3te6_A 121 FYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWI-S-SKNSKLSIICVGGHNVTIREQINIMPSLKA-HFTEIKLNK 197 (318)
T ss_dssp HHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHH-H-CSSCCEEEEEECCSSCCCHHHHHTCHHHHT-TEEEEECCC
T ss_pred HHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcc-c-ccCCcEEEEEEecCcccchhhcchhhhccC-CceEEEeCC
Confidence 333332 356799999999864 2233332211 1 12232 3334433321 1 111 125788999
Q ss_pred CChhhHHHHHHHHhh
Q 041551 298 LVYTDAQKLFSQYAF 312 (808)
Q Consensus 298 L~~~ea~~Lf~~~~~ 312 (808)
++.+|-.+++..++-
T Consensus 198 Yt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 198 VDKNELQQMIITRLK 212 (318)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988773
No 190
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.86 E-value=0.00011 Score=77.46 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=85.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh-hcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI-SRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~-~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~ 244 (808)
.+-|.|+|++|+|||+||+++++.. ...| +.+.. .+.. ....+. ....+..+.+.. ..++
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~~-~~l~-------------~~~~g~-~~~~~~~lf~~a~~~~~ 106 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTF---FSISS-SDLV-------------SKWLGE-SEKLVKNLFQLARENKP 106 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEEC-CSSC-------------CSSCCS-CHHHHHHHHHHHHHTSS
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEEh-HHHH-------------hhhhhH-HHHHHHHHHHHHHhcCC
Confidence 5678999999999999999999876 2221 12221 0000 000000 011122222222 3567
Q ss_pred EEEEEecCCCH-------------HHHHHHHhccCC---CCCCCEEEEEeCchhhhhh---cCCCeEEEecCCChhhHHH
Q 041551 245 VLLVFDDVNNP-------------RQIESLIGHLDH---LASGSRVIITTRDKQVLKN---CWAGQIYQMKELVYTDAQK 305 (808)
Q Consensus 245 ~LlVlDdv~~~-------------~~~~~l~~~l~~---~~~gs~IiiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~ 305 (808)
.+|+||+++.. .....++..+.. ...+..||.||...+.... -.....+.++..+.++-.+
T Consensus 107 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~ 186 (322)
T 1xwi_A 107 SIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAA 186 (322)
T ss_dssp EEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHH
T ss_pred cEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHH
Confidence 89999999754 123334333322 1334455556654432111 1344678889999999999
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCc-hhhHHHHh
Q 041551 306 LFSQYAFRGGHLDSSYTELTDKAIKYAQGV-PLALKVLG 343 (808)
Q Consensus 306 Lf~~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~~ 343 (808)
++..++.... ..........|++.+.|. +-.|..+.
T Consensus 187 il~~~l~~~~--~~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 187 MFKLHLGTTQ--NSLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp HHHHHHTTCC--BCCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHHHhcCC--CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9988763221 111234567778888776 33344433
No 191
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.81 E-value=0.00017 Score=77.18 Aligned_cols=99 Identities=6% Similarity=0.107 Sum_probs=63.0
Q ss_pred cceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCC
Q 041551 242 RKMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHL 317 (808)
Q Consensus 242 ~~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 317 (808)
+++-++|+|+++. .+..+.+...+.....+..+|++|.... +.... .....+++++++.++..+.+...+.....
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~- 211 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI- 211 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-
Confidence 4677999999975 3334455544433345677888876643 22111 22368899999999999999887632221
Q ss_pred CchH-HHHHHHHHHHhcCchhhHHHH
Q 041551 318 DSSY-TELTDKAIKYAQGVPLALKVL 342 (808)
Q Consensus 318 ~~~~-~~~~~~i~~~~~glPLal~~~ 342 (808)
.-. .+.++.|++.++|.+-.+..+
T Consensus 212 -~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 212 -QLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp -EECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred -CCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 111 355678889999988655433
No 192
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.78 E-value=0.00041 Score=76.50 Aligned_cols=157 Identities=16% Similarity=0.149 Sum_probs=86.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~ 245 (808)
.+-|.|+|++|+|||+||+++++.... .-|+.. +.. .+.... .+. ....+..+.+.. ...+.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~----~~~~~v----~~~----~l~~~~----~g~-~~~~~~~~f~~a~~~~~~ 229 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANN----STFFSI----SSS----DLVSKW----LGE-SEKLVKNLFQLARENKPS 229 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCS----SEEEEE----CCC------------------CCCTHHHHHHHHHHSCSE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC----CCEEEE----eHH----HHHhhh----cch-HHHHHHHHHHHHHHcCCe
Confidence 567899999999999999999987621 122221 000 011111 111 112233333332 35678
Q ss_pred EEEEecCCCH-------------HHHHHHHhccCCC---CCCCEEEEEeCchhhhhh---cCCCeEEEecCCChhhHHHH
Q 041551 246 LLVFDDVNNP-------------RQIESLIGHLDHL---ASGSRVIITTRDKQVLKN---CWAGQIYQMKELVYTDAQKL 306 (808)
Q Consensus 246 LlVlDdv~~~-------------~~~~~l~~~l~~~---~~gs~IiiTTR~~~v~~~---~~~~~~~~l~~L~~~ea~~L 306 (808)
+|+||+++.. .....++..+... ..+..||.||...+.... -.....+.++..+.++..++
T Consensus 230 vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~i 309 (444)
T 2zan_A 230 IIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAM 309 (444)
T ss_dssp EEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHH
T ss_pred EEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHH
Confidence 9999999853 2244555544332 345566667765432211 12345778888888888899
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHhcCc-hhhHHHH
Q 041551 307 FSQYAFRGGHLDSSYTELTDKAIKYAQGV-PLALKVL 342 (808)
Q Consensus 307 f~~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~ 342 (808)
|..++.... ..........|++.+.|. +-.|..+
T Consensus 310 l~~~l~~~~--~~l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 310 FRLHLGSTQ--NSLTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp HHHHHTTSC--EECCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHhcCC--CCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 888763221 111234556778888774 3344433
No 193
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.77 E-value=4.8e-05 Score=72.83 Aligned_cols=98 Identities=27% Similarity=0.236 Sum_probs=53.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccC-ceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFE-GSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~-~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~ 245 (808)
.+.++|+|.+|+||||||+.+++.+..... .+.++. ..++...+.......... .+.+.+. +.-
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~ 102 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD----------TKDLIFRLKHLMDEGKDT----KFLKTVL-NSP 102 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE----------HHHHHHHHHHHHHHTCCS----HHHHHHH-TCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHhcCchHH----HHHHHhc-CCC
Confidence 467899999999999999999997642212 334443 122222222222111111 2223333 456
Q ss_pred EEEEecCCC----HHH---HHHHHhccCCCCCCCEEEEEeCch
Q 041551 246 LLVFDDVNN----PRQ---IESLIGHLDHLASGSRVIITTRDK 281 (808)
Q Consensus 246 LlVlDdv~~----~~~---~~~l~~~l~~~~~gs~IiiTTR~~ 281 (808)
+|||||++. ... +..+..... ..|..||+||...
T Consensus 103 llilDE~~~~~~~~~~~~~l~~ll~~~~--~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 103 VLVLDDLGSERLSDWQRELISYIITYRY--NNLKSTIITTNYS 143 (180)
T ss_dssp EEEEETCSSSCCCHHHHHHHHHHHHHHH--HTTCEEEEECCCC
T ss_pred EEEEeCCCCCcCCHHHHHHHHHHHHHHH--HcCCCEEEEcCCC
Confidence 889999972 222 222222211 2467888888754
No 194
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.76 E-value=0.00038 Score=72.59 Aligned_cols=127 Identities=16% Similarity=0.221 Sum_probs=73.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHH-HccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNR-LARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~-L~~~~~ 245 (808)
.+.|.|+|++|+|||+||+.+++.....| +.+. ...+...+ .+... ..+..+.+. ....+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~----------~~~l~~~~----~g~~~-~~~~~~f~~a~~~~p~ 110 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK----------GPELLTMW----FGESE-ANVREIFDKARQAAPC 110 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC----------HHHHHHHH----HTTCT-THHHHHHHHHHHTCSE
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE----------hHHHHhhh----cCchH-HHHHHHHHHHHhcCCe
Confidence 45689999999999999999998764322 2222 11222222 12111 122222222 235679
Q ss_pred EEEEecCCCHH----------------HHHHHHhccCC--CCCCCEEEEEeCchhhhhh-c----CCCeEEEecCCChhh
Q 041551 246 LLVFDDVNNPR----------------QIESLIGHLDH--LASGSRVIITTRDKQVLKN-C----WAGQIYQMKELVYTD 302 (808)
Q Consensus 246 LlVlDdv~~~~----------------~~~~l~~~l~~--~~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~e 302 (808)
++++|+++... ....++..+.. ...+..||.||...+.... . .....+.++..+.++
T Consensus 111 il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~ 190 (301)
T 3cf0_A 111 VLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 190 (301)
T ss_dssp EEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred EEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHH
Confidence 99999997521 12344433321 1234566777765533211 1 234678999999999
Q ss_pred HHHHHHHHh
Q 041551 303 AQKLFSQYA 311 (808)
Q Consensus 303 a~~Lf~~~~ 311 (808)
-.+++...+
T Consensus 191 r~~il~~~l 199 (301)
T 3cf0_A 191 RVAILKANL 199 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 899887766
No 195
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.74 E-value=5e-05 Score=73.14 Aligned_cols=125 Identities=15% Similarity=0.083 Sum_probs=65.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc-------cCceEEEecchhhhh-ccCHHHHHHHHHhhHhcCcccccHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH-------FEGSYFAQNVREAEE-TGGIKDLQKELLSDVLNDRILRDVRSQLN 238 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-------F~~~~~~~~~~~~~~-~~~~~~l~~~ll~~~~~~~~~~~~~~l~~ 238 (808)
.+.+.|+|.+|+|||+||+.+++.+... ....+++.. ..... ........ ..+..+.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------~~~~~~~~ 108 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM-GALVAGAKYRGEFE-------------ERLKGVLN 108 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH-HHHHTTTCSHHHHH-------------HHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH-HHHhccCCccccHH-------------HHHHHHHH
Confidence 4557899999999999999999876431 122233331 11100 00000000 11222222
Q ss_pred HH--ccceEEEEEecCCCHH---------H-HHHHHhccCCCCCCCEEEEEeCchhhhhhc-------CCCeEEEecCCC
Q 041551 239 RL--ARKMVLLVFDDVNNPR---------Q-IESLIGHLDHLASGSRVIITTRDKQVLKNC-------WAGQIYQMKELV 299 (808)
Q Consensus 239 ~L--~~~~~LlVlDdv~~~~---------~-~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~-------~~~~~~~l~~L~ 299 (808)
.+ .+++.+|||||++... . .+.+...+. ..+..+|.||......... .....+.+++++
T Consensus 109 ~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~ 186 (195)
T 1jbk_A 109 DLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPS 186 (195)
T ss_dssp HHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCC
T ss_pred HHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCC
Confidence 22 3567899999997541 1 222222221 2345577777665422111 112357888888
Q ss_pred hhhHHHHH
Q 041551 300 YTDAQKLF 307 (808)
Q Consensus 300 ~~ea~~Lf 307 (808)
.++..+++
T Consensus 187 ~~~~~~il 194 (195)
T 1jbk_A 187 VEDTIAIL 194 (195)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 88876553
No 196
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.73 E-value=7.1e-06 Score=77.30 Aligned_cols=84 Identities=18% Similarity=0.264 Sum_probs=46.6
Q ss_pred ccceeccCCCCCCCC-CCCCCCCCCCcEEecCCCCCCccc-cccccCC----CCcCEEecCCCCCCCcCCC--cCCCCCC
Q 041551 534 NLKEIDLSRSESLTK-LPDLSRAKNLEILWLRGCLSLVET-HSTIQYL----NKLEDLDLDYCISLTSLPT--SIHSKHL 605 (808)
Q Consensus 534 ~L~~L~L~~n~~~~~-~p~~~~l~~L~~L~L~~n~~l~~~-p~~~~~l----~~L~~L~l~~~~~l~~lp~--~~~l~~L 605 (808)
+|+.|||++|.+... +..+.++++|+.|+|++|..++.- -..+..+ ++|++|+|++|..+++-.- ...+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 466666666652221 112556677777777777544331 1223333 3577777777766654221 1156777
Q ss_pred CEEeccCCCCCC
Q 041551 606 KELSLRGCSNLK 617 (808)
Q Consensus 606 ~~L~L~~~~~l~ 617 (808)
++|+|++|+.++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 777777776554
No 197
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.73 E-value=0.00012 Score=78.51 Aligned_cols=157 Identities=13% Similarity=0.120 Sum_probs=85.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhc-cCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEET-GGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~-~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~ 244 (808)
.+.|.|+|.+|+|||+||+.+++.....| +.+.. .+.... .+. ....+..+.... ..++
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~---~~i~~-~~l~~~~~g~---------------~~~~~~~~~~~a~~~~~ 177 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATF---FSISA-SSLTSKWVGE---------------GEKMVRALFAVARCQQP 177 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEE---EEEEG-GGGCCSSTTH---------------HHHHHHHHHHHHHHTCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeE---EEEeh-HHhhccccch---------------HHHHHHHHHHHHHhcCC
Confidence 56789999999999999999998764322 22321 111000 000 001111122222 3467
Q ss_pred EEEEEecCCCH-------------HHHHHHHhccCC----CCCCCEEEEEeCchhhh-hh--cCCCeEEEecCCChhhHH
Q 041551 245 VLLVFDDVNNP-------------RQIESLIGHLDH----LASGSRVIITTRDKQVL-KN--CWAGQIYQMKELVYTDAQ 304 (808)
Q Consensus 245 ~LlVlDdv~~~-------------~~~~~l~~~l~~----~~~gs~IiiTTR~~~v~-~~--~~~~~~~~l~~L~~~ea~ 304 (808)
.+|+||+++.. ..+..++..+.. ...+..||.||...... .. -.....+.++..+.++..
T Consensus 178 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~ 257 (357)
T 3d8b_A 178 AVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARK 257 (357)
T ss_dssp EEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHH
T ss_pred eEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHH
Confidence 89999998532 123334333321 12344555566554221 11 123457789999999999
Q ss_pred HHHHHHhhcCCCCCchHHHHHHHHHHHhcC-chhhHHHHhh
Q 041551 305 KLFSQYAFRGGHLDSSYTELTDKAIKYAQG-VPLALKVLGC 344 (808)
Q Consensus 305 ~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLal~~~~~ 344 (808)
+++...+..... .-..+..+.+++.+.| .+-+|..+..
T Consensus 258 ~il~~~~~~~~~--~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 258 QIVINLMSKEQC--CLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHhhcCC--CccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 998877632211 1123556778888888 4555555543
No 198
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.72 E-value=6.8e-05 Score=73.22 Aligned_cols=97 Identities=16% Similarity=0.288 Sum_probs=54.5
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLL 247 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~Ll 247 (808)
+.+.|+|.+|+|||+||+.+++....+...++|+.. ..+...+...... .....+.+.+.+. -+|
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~l 119 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV----------PELFRELKHSLQD----QTMNEKLDYIKKV-PVL 119 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH----------HHHHHHHHHC-------CCCHHHHHHHHHS-SEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh----------HHHHHHHHHHhcc----chHHHHHHHhcCC-CEE
Confidence 578899999999999999999987665555666652 1222222222111 1123333344333 389
Q ss_pred EEecCCC--HHH------HHHHHhccCCCCCCCEEEEEeCch
Q 041551 248 VFDDVNN--PRQ------IESLIGHLDHLASGSRVIITTRDK 281 (808)
Q Consensus 248 VlDdv~~--~~~------~~~l~~~l~~~~~gs~IiiTTR~~ 281 (808)
||||++. ... +..+.... ...+.++|+||...
T Consensus 120 ilDei~~~~~~~~~~~~ll~~~l~~~--~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 120 MLDDLGAEAMSSWVRDDVFGPILQYR--MFENLPTFFTSNFD 159 (202)
T ss_dssp EEEEECCC---CCGGGTTHHHHHHHH--HHTTCCEEEEESSC
T ss_pred EEcCCCCCcCCHHHHHHHHHHHHHHH--HhCCCCEEEEcCCC
Confidence 9999954 211 22222211 12356788888754
No 199
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.72 E-value=0.0001 Score=81.17 Aligned_cols=152 Identities=20% Similarity=0.279 Sum_probs=86.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
++.+.|+|.+|+||||||+.+++.....|.. +.. ...+...+.. ++... ......+++.+
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~---l~a-----~~~~~~~ir~-~~~~a-----------~~~~~~~~~~i 109 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYANADVER---ISA-----VTSGVKEIRE-AIERA-----------RQNRNAGRRTI 109 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHTTCEEEE---EET-----TTCCHHHHHH-HHHHH-----------HHHHHTTCCEE
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHhCCCeEE---EEe-----ccCCHHHHHH-HHHHH-----------HHhhhcCCCcE
Confidence 4568999999999999999999876544321 121 1122222211 11110 00112457889
Q ss_pred EEEecCCCH--HHHHHHHhccCCCCCCCEEEE-EeCchh--hhhh-cCCCeEEEecCCChhhHHHHHHHHhhcCC-----
Q 041551 247 LVFDDVNNP--RQIESLIGHLDHLASGSRVII-TTRDKQ--VLKN-CWAGQIYQMKELVYTDAQKLFSQYAFRGG----- 315 (808)
Q Consensus 247 lVlDdv~~~--~~~~~l~~~l~~~~~gs~Iii-TTR~~~--v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~----- 315 (808)
|+||+++.. .+.+.|+..+.. ....+|. ||.+.. +... .....++.+++++.++..+++.+.+-...
T Consensus 110 LfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~ 187 (447)
T 3pvs_A 110 LFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGG 187 (447)
T ss_dssp EEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTT
T ss_pred EEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhcc
Confidence 999999853 344455554442 1233333 554442 1111 12235889999999999999988764311
Q ss_pred CCCchHHHHHHHHHHHhcCchhhHH
Q 041551 316 HLDSSYTELTDKAIKYAQGVPLALK 340 (808)
Q Consensus 316 ~~~~~~~~~~~~i~~~~~glPLal~ 340 (808)
....-..+..+.+++.++|.+-.+.
T Consensus 188 ~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 188 QDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp SSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred ccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 1122345667888888999876544
No 200
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.71 E-value=0.00087 Score=72.84 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=29.9
Q ss_pred CCceeEEEecCCCCCCc----ccCcccceEeecCCCCcccccch-hhcccccceeccCC
Q 041551 489 FAEVRHLEWARCPLKTL----NICAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSR 542 (808)
Q Consensus 489 ~~~Lr~L~l~~~~l~~l----~~~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~ 542 (808)
..+|+.+.+.. .++.+ +..+.+|+.++|..+ ++.++.. |.++.+|+.+.+..
T Consensus 70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 45677776653 24444 445667777777643 5555433 66666666655543
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.58 E-value=0.00036 Score=75.73 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=82.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~ 245 (808)
.+-|.|+|.+|+|||+||+.++++....| +.+.. .... ... .+. ....+..+.+.. ...+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~---~~v~~-~~l~-----~~~--------~g~-~~~~~~~~~~~a~~~~~~ 209 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATF---FNISA-ASLT-----SKY--------VGE-GEKLVRALFAVARELQPS 209 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEE---EEECS-CCC---------------------CHHHHHHHHHHHHHSSSE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcE---EEeeH-HHhh-----ccc--------cch-HHHHHHHHHHHHHhcCCe
Confidence 46789999999999999999988754322 22221 1000 000 000 001112222222 24557
Q ss_pred EEEEecCCCH-------------HHHHHHHhccC---C-CCCCCEEEEEeCchhhhh-h--cCCCeEEEecCCChhhHHH
Q 041551 246 LLVFDDVNNP-------------RQIESLIGHLD---H-LASGSRVIITTRDKQVLK-N--CWAGQIYQMKELVYTDAQK 305 (808)
Q Consensus 246 LlVlDdv~~~-------------~~~~~l~~~l~---~-~~~gs~IiiTTR~~~v~~-~--~~~~~~~~l~~L~~~ea~~ 305 (808)
+|+||+++.. .....++..+. . ......||.||...+... . ......+.++..+.++..+
T Consensus 210 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~ 289 (389)
T 3vfd_A 210 IIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLL 289 (389)
T ss_dssp EEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHH
T ss_pred EEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHH
Confidence 9999999643 11222322221 1 122344555665432211 1 1233568899999999999
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHhcCchh-hHHHHh
Q 041551 306 LFSQYAFRGGHLDSSYTELTDKAIKYAQGVPL-ALKVLG 343 (808)
Q Consensus 306 Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~~ 343 (808)
++...+-... ..-..+....+++.+.|..- +|..+.
T Consensus 290 il~~~~~~~~--~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 290 LLKNLLCKQG--SPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp HHHHHHTTSC--CCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9988773322 22223456788888887543 554443
No 202
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.54 E-value=1.7e-05 Score=74.70 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=46.7
Q ss_pred hhcccccceeccCCCCCCCCCC--CCCCC----CCCcEEecCCCCCCccc-cccccCCCCcCEEecCCCCCCCcC
Q 041551 529 VQDLVNLKEIDLSRSESLTKLP--DLSRA----KNLEILWLRGCLSLVET-HSTIQYLNKLEDLDLDYCISLTSL 596 (808)
Q Consensus 529 ~~~l~~L~~L~L~~n~~~~~~p--~~~~l----~~L~~L~L~~n~~l~~~-p~~~~~l~~L~~L~l~~~~~l~~l 596 (808)
+.+|++|+.|+|++|..++.-. .++.+ ++|++|+|++|..++.- -..+..+++|++|+|++|..+++.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 5677888888888886554322 24443 46888888888755441 234667888999999988877653
No 203
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.53 E-value=0.0012 Score=70.26 Aligned_cols=154 Identities=12% Similarity=0.196 Sum_probs=85.5
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhcc-cCce-EEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEE
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISRH-FEGS-YFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLL 247 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~~-F~~~-~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~Ll 247 (808)
+.++|++|+||||+|+.+++.+... +... ..+. .+...+...+.. ......... ..+.+.+-++
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~----~~~~~~~~~ir~-~i~~~~~~~---------~~~~~~~~vi 114 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN----ASDDRGIDVVRN-QIKDFASTR---------QIFSKGFKLI 114 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC----TTSCCSHHHHHT-HHHHHHHBC---------CSSSCSCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc----CcccccHHHHHH-HHHHHHhhc---------ccCCCCceEE
Confidence 8899999999999999999875332 1111 1111 111112222211 111110000 0012346789
Q ss_pred EEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchh-hhhhc-CCCeEEEecCCChhhHHHHHHHHhhcCCCCCchHHH
Q 041551 248 VFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQ-VLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRGGHLDSSYTE 323 (808)
Q Consensus 248 VlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~ 323 (808)
|+|+++. .+..+.+...+......+++|++|.... +.... .....+++.+++.++..+.+...+-... ..-..+
T Consensus 115 iiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~--~~i~~~ 192 (340)
T 1sxj_C 115 ILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEK--LKLSPN 192 (340)
T ss_dssp EETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTT--CCBCHH
T ss_pred EEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcC--CCCCHH
Confidence 9999864 3444555544433345667777765442 11111 1235789999999999988877662211 122345
Q ss_pred HHHHHHHHhcCchhhH
Q 041551 324 LTDKAIKYAQGVPLAL 339 (808)
Q Consensus 324 ~~~~i~~~~~glPLal 339 (808)
..+.+++.++|.+-.+
T Consensus 193 ~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 193 AEKALIELSNGDMRRV 208 (340)
T ss_dssp HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCCHHHH
Confidence 6778889999987643
No 204
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.51 E-value=0.00021 Score=74.38 Aligned_cols=155 Identities=18% Similarity=0.152 Sum_probs=82.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhc-cCHHHHHHHHHhhHhcCcccccHHHHHHH-Hccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEET-GGIKDLQKELLSDVLNDRILRDVRSQLNR-LARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~-~~~~~l~~~ll~~~~~~~~~~~~~~l~~~-L~~~~ 244 (808)
.+.+.|+|++|+||||+|+.+++.....| +.+....-.... ..... ....+... ....+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~~~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~ 114 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATF---LNISAASLTSKYVGDGEK----------------LVRALFAVARHMQP 114 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEESTTTSSSSCSCHHH----------------HHHHHHHHHHHTCS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEeeHHHHhhcccchHHH----------------HHHHHHHHHHHcCC
Confidence 46789999999999999999998764322 122211000000 01111 11111111 23467
Q ss_pred EEEEEecCCCH-------------HHHHHHHhcc---CCC--CCCCEEEEEeCchhhhh-hc--CCCeEEEecCCChhhH
Q 041551 245 VLLVFDDVNNP-------------RQIESLIGHL---DHL--ASGSRVIITTRDKQVLK-NC--WAGQIYQMKELVYTDA 303 (808)
Q Consensus 245 ~LlVlDdv~~~-------------~~~~~l~~~l---~~~--~~gs~IiiTTR~~~v~~-~~--~~~~~~~l~~L~~~ea 303 (808)
.+|++|+++.. .....++..+ +.. +.+..||.||...+... .. .....+.++..+.++.
T Consensus 115 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r 194 (297)
T 3b9p_A 115 SIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTR 194 (297)
T ss_dssp EEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHH
T ss_pred cEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHH
Confidence 89999998542 1122222222 211 13445666776543211 10 2335677888888888
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchh-hHHHH
Q 041551 304 QKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPL-ALKVL 342 (808)
Q Consensus 304 ~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~ 342 (808)
.+++...+-.... .-..+....+++.+.|.+- ++..+
T Consensus 195 ~~il~~~~~~~~~--~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 195 ELLLNRLLQKQGS--PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp HHHHHHHHGGGSC--CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 8888776632221 1223456778888888775 45443
No 205
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.46 E-value=0.0014 Score=71.14 Aligned_cols=206 Identities=19% Similarity=0.183 Sum_probs=93.3
Q ss_pred CcccceEeecCCCCcccccch-hhcccccceeccCCCCCCCCCCC--CCCCCCCcEEecCCCCCCccccccccCCCCcCE
Q 041551 508 CAEKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSESLTKLPD--LSRAKNLEILWLRGCLSLVETHSTIQYLNKLED 584 (808)
Q Consensus 508 ~~~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p~~~~~l~~L~~ 584 (808)
.+.+|+.+.+..+ +..++.. |.++.+|+.+.+..+ +..++. |.++..|+.+.+..+ ...+........+|+.
T Consensus 160 ~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 160 TCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKN 234 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCE
T ss_pred ccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCce
Confidence 3445555555432 2333322 455555555555544 223332 555555555554442 1122223333445555
Q ss_pred EecCCCCCCCcCCCcC--CCCCCCEEeccCCCCCCcccccccc---cccEEEecccCCeecCc-ccccCCcCcEEEeecC
Q 041551 585 LDLDYCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITSC---HMWRLELTKVGIKELPS-SIECLSNLQYLYIWDC 658 (808)
Q Consensus 585 L~l~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~---~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n 658 (808)
+.+.. .+..++... ++.+|+.+.+..+. ..++..... .++.+.+..+ .+|. .+..+.+|+.+.+.++
T Consensus 235 i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~--~~i~~~~F~~~~~l~~~~~~~~---~i~~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 235 IIIPD--SFTELGKSVFYGCTDLESISIQNNK--LRIGGSLFYNCSGLKKVIYGSV---IVPEKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp EEECT--TCCEECSSTTTTCSSCCEEEECCTT--CEECSCTTTTCTTCCEEEECSS---EECTTTTTTCTTCCEEEECTT
T ss_pred EEECC--CceecccccccccccceeEEcCCCc--ceeeccccccccccceeccCce---eeccccccccccccccccccc
Confidence 55543 233333322 44555555554431 111111110 1333333322 1222 3556667777766443
Q ss_pred CCcccccc-cccCCCCCCEEEeecCCCCccccCCCCCcCCC-CceeeecCCCCCCCCcccccccCCCcccccccccc
Q 041551 659 SELESISS-SIFKLNSLESIDISNCSNLKRFLEIPSCNIDG-GFAFCIVVPHCWEPCETHEVFCGLKHKSQRNLDRR 733 (808)
Q Consensus 659 ~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~~~-~~~~~l~l~~~~~~~~~~~~f~~l~~l~~~~l~~n 733 (808)
+..++. .|.++++|+.+++.++ ++.++. ..+.+ ..+..+.++.+ +..+....|..+.+|..+.+..+
T Consensus 308 --i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~---~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 308 --VKFIGEEAFESCTSLVSIDLPYL--VEEIGK---RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp --CCEECTTTTTTCTTCCEECCCTT--CCEECT---TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred --cceechhhhcCCCCCCEEEeCCc--ccEEhH---HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 244433 3666777777776432 444432 22222 12334555544 44455567777777777766543
No 206
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.46 E-value=0.0012 Score=69.64 Aligned_cols=152 Identities=14% Similarity=0.145 Sum_probs=82.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+++.+.|.+|+|||++|+.+++.+... .+.+.. + ..+...+.. .+....... ...+++.+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~~~---~~~i~~----~-~~~~~~i~~-~~~~~~~~~----------~~~~~~~v 108 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVNAD---MMFVNG----S-DCKIDFVRG-PLTNFASAA----------SFDGRQKV 108 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTTEE---EEEEET----T-TCCHHHHHT-HHHHHHHBC----------CCSSCEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCCC---EEEEcc----c-ccCHHHHHH-HHHHHHhhc----------ccCCCCeE
Confidence 3567888999999999999999876422 233331 1 112222211 111100000 01236789
Q ss_pred EEEecCCCHH---HHHHHHhccCCCCCCCEEEEEeCchhhhh-hc-CCCeEEEecCCChhhHHHHH-------HHHhhcC
Q 041551 247 LVFDDVNNPR---QIESLIGHLDHLASGSRVIITTRDKQVLK-NC-WAGQIYQMKELVYTDAQKLF-------SQYAFRG 314 (808)
Q Consensus 247 lVlDdv~~~~---~~~~l~~~l~~~~~gs~IiiTTR~~~v~~-~~-~~~~~~~l~~L~~~ea~~Lf-------~~~~~~~ 314 (808)
+|+||++... ..+.+...+.....+.++|+||....-.. .. .....+++++++.++-.+++ ...+...
T Consensus 109 liiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~ 188 (324)
T 3u61_B 109 IVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHE 188 (324)
T ss_dssp EEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999998653 44555544433345677888887654111 00 11257899999988743332 2222111
Q ss_pred CCCCchHHHHHHHHHHHhcCchhh
Q 041551 315 GHLDSSYTELTDKAIKYAQGVPLA 338 (808)
Q Consensus 315 ~~~~~~~~~~~~~i~~~~~glPLa 338 (808)
.. .-...+..+.+++.++|.+-.
T Consensus 189 ~~-~~~~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 189 GI-AIADMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp TC-CBSCHHHHHHHHHHTCSCTTH
T ss_pred CC-CCCcHHHHHHHHHhCCCCHHH
Confidence 11 111125667788888887653
No 207
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.46 E-value=0.0027 Score=67.09 Aligned_cols=232 Identities=15% Similarity=0.145 Sum_probs=115.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
...+.|+|++|+||||||+.++..+...|. ... . .......++ ..+...+ .++-+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s--g--~~~~~~~~l-----------------~~~~~~~-~~~~v 105 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS--G--PVLVKQGDM-----------------AAILTSL-ERGDV 105 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE--T--TTCCSHHHH-----------------HHHHHHC-CTTCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe--c--hHhcCHHHH-----------------HHHHHHc-cCCCE
Confidence 456899999999999999999997644321 111 0 000011111 1111112 23346
Q ss_pred EEEecCCC--HHHHHHHHhccCCCC------------------CCCEEE-EEeCchhhhhhc--CCCeEEEecCCChhhH
Q 041551 247 LVFDDVNN--PRQIESLIGHLDHLA------------------SGSRVI-ITTRDKQVLKNC--WAGQIYQMKELVYTDA 303 (808)
Q Consensus 247 lVlDdv~~--~~~~~~l~~~l~~~~------------------~gs~Ii-iTTR~~~v~~~~--~~~~~~~l~~L~~~ea 303 (808)
+++|+++. ....+.+...+.... +...++ .|++...+.... .......+++.+.++-
T Consensus 106 ~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l 185 (334)
T 1in4_A 106 LFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKEL 185 (334)
T ss_dssp EEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHH
T ss_pred EEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHH
Confidence 77888754 223333332221110 011222 344433322111 2234688999999999
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHhcCchhhHHHHhhhh------cCC---CHHHHHHHHhhhhcCcchhHHHHHH
Q 041551 304 QKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVPLALKVLGCYL------CGR---SKEEWESAMRKLEIIPHVEIQEVLK 374 (808)
Q Consensus 304 ~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glPLal~~~~~~L------~~~---~~~~w~~~l~~l~~~~~~~i~~~l~ 374 (808)
.+++.+.+-... .....+.+..|++.+.|.|-.+..+...+ .+. +.+..+.++..+.
T Consensus 186 ~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~------------ 251 (334)
T 1in4_A 186 KEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN------------ 251 (334)
T ss_dssp HHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhC------------
Confidence 999988763221 22345668889999999996544332221 111 2233333333221
Q ss_pred HhhcCCcHHHHHHHhhhhhccCCc--chhHHHHHHhhcCCcchhhhh-hhhcccceeeecCCeEEe
Q 041551 375 ISYDSLDDSQKNIFLDIACFLEGE--HRDKVISFFDASGLEAKIELS-VLEGKSLINLDVFDQIRM 437 (808)
Q Consensus 375 ~sy~~L~~~~k~~fl~la~fp~~~--~~~~l~~~~~~~g~~~~~~l~-~L~~~sLi~~~~~~~~~m 437 (808)
.....++...+.++..++-...+. ..+.+......+....+...+ .|...++++....+++-.
T Consensus 252 ~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~g~i~~~~~gr~~~ 317 (334)
T 1in4_A 252 IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVT 317 (334)
T ss_dssp CCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEEEEC
T ss_pred CCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHcCCeecccccHHhh
Confidence 112345666666655444332222 334444443322111111122 688899998887666543
No 208
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0015 Score=69.84 Aligned_cols=148 Identities=16% Similarity=0.193 Sum_probs=82.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~ 245 (808)
.+=|.++|++|.|||.||++++++....| +.+....-.+...+- ....++.+.+.- ...++
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~~s~l~sk~vGe---------------se~~vr~lF~~Ar~~aP~ 243 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVSGAELVQKYIGE---------------GSRMVRELFVMAREHAPS 243 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEEGGGGSCSSTTH---------------HHHHHHHHHHHHHHTCSE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEEhHHhhccccch---------------HHHHHHHHHHHHHHhCCc
Confidence 46688999999999999999999866543 222211000000000 001112222211 35689
Q ss_pred EEEEecCCCH----------------HHHHHHHhccCCC--CCCCEEEEEeCchhhhhh-c----CCCeEEEecCCChhh
Q 041551 246 LLVFDDVNNP----------------RQIESLIGHLDHL--ASGSRVIITTRDKQVLKN-C----WAGQIYQMKELVYTD 302 (808)
Q Consensus 246 LlVlDdv~~~----------------~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~e 302 (808)
+|++|+++.. ..+..++..+... ..+-.||.||...+.... . ..+..+.++.-+.++
T Consensus 244 IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~ 323 (405)
T 4b4t_J 244 IIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAA 323 (405)
T ss_dssp EEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred eEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHH
Confidence 9999998741 1234454444332 234445667765543221 1 345788999889999
Q ss_pred HHHHHHHHhhcCCC-CCchHHHHHHHHHHHhcCch
Q 041551 303 AQKLFSQYAFRGGH-LDSSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 303 a~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~glP 336 (808)
-.++|..+.-+... ...+ ...+++.+.|.-
T Consensus 324 R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 324 RAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp HHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred HHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 89999877632221 1122 345667777653
No 209
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.43 E-value=0.003 Score=68.53 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=38.6
Q ss_pred ccCcccceEeecCCCC---cccccch-hhcccccceeccCCCCCCCCCCC--CCCCCCCcEEecCCCCCCcccc-ccccC
Q 041551 506 NICAEKLVSLKMPRSK---VQQLWDD-VQDLVNLKEIDLSRSESLTKLPD--LSRAKNLEILWLRGCLSLVETH-STIQY 578 (808)
Q Consensus 506 ~~~~~~L~~L~L~~n~---l~~l~~~-~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p-~~~~~ 578 (808)
+..+.+|+.+.+..+. ++.+... |.++.+|+.+.+..+ +..++. |.++.+|+.+.+..+ ...++ ..+..
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~ 158 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSY 158 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccce--eeeecccceec
Confidence 4445566666554432 4444332 555566665555543 233332 555666666665432 12222 23445
Q ss_pred CCCcCEEecCC
Q 041551 579 LNKLEDLDLDY 589 (808)
Q Consensus 579 l~~L~~L~l~~ 589 (808)
+.+|+.+.+..
T Consensus 159 c~~L~~i~~~~ 169 (394)
T 4gt6_A 159 CYSLHTVTLPD 169 (394)
T ss_dssp CTTCCEEECCT
T ss_pred ccccccccccc
Confidence 55555555543
No 210
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.39 E-value=0.00025 Score=65.31 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=27.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
-..++|+|..|.|||||++.++......=...+++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 457899999999999999999997654211255655
No 211
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.38 E-value=0.00011 Score=74.60 Aligned_cols=76 Identities=32% Similarity=0.371 Sum_probs=42.2
Q ss_pred ccceEeecCCCCccccc---chhhcccccceeccCCCCCCCCCCCCCCCC--CCcEEecCCCCCCcccc-------cccc
Q 041551 510 EKLVSLKMPRSKVQQLW---DDVQDLVNLKEIDLSRSESLTKLPDLSRAK--NLEILWLRGCLSLVETH-------STIQ 577 (808)
Q Consensus 510 ~~L~~L~L~~n~l~~l~---~~~~~l~~L~~L~L~~n~~~~~~p~~~~l~--~L~~L~L~~n~~l~~~p-------~~~~ 577 (808)
.+|+.|+|++|.+..++ ..+..+++|+.|+|++|.+.. +..+..+. +|++|+|++|.....+| ..+.
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-chhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 34555566666665443 445667777777777775433 23222222 67777777765444333 1245
Q ss_pred CCCCcCEEe
Q 041551 578 YLNKLEDLD 586 (808)
Q Consensus 578 ~l~~L~~L~ 586 (808)
.+++|+.||
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 566666665
No 212
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.37 E-value=5.5e-05 Score=72.78 Aligned_cols=109 Identities=15% Similarity=0.073 Sum_probs=60.5
Q ss_pred CCCCCCCcEEecCCC-CCCc----cccccccCCCCcCEEecCCCCCCCc-----CCCcC-CCCCCCEEeccCCCCCCccc
Q 041551 552 LSRAKNLEILWLRGC-LSLV----ETHSTIQYLNKLEDLDLDYCISLTS-----LPTSI-HSKHLKELSLRGCSNLKIFP 620 (808)
Q Consensus 552 ~~~l~~L~~L~L~~n-~~l~----~~p~~~~~l~~L~~L~l~~~~~l~~-----lp~~~-~l~~L~~L~L~~~~~l~~~p 620 (808)
+...++|++|+|++| .... .+...+...++|++|+|++|. ++. +...+ ..++|++|+|++
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~-------- 102 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVES-------- 102 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCS--------
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcC--------
Confidence 345566777777776 3221 133445555666666666653 322 11111 224455555554
Q ss_pred ccccccccEEEecccCCe-----ecCcccccCCcCcEEEe--ecCCCccc----ccccccCCCCCCEEEeecCC
Q 041551 621 EITSCHMWRLELTKVGIK-----ELPSSIECLSNLQYLYI--WDCSELES----ISSSIFKLNSLESIDISNCS 683 (808)
Q Consensus 621 ~~~~~~L~~L~L~~n~i~-----~lp~~~~~l~~L~~L~L--~~n~~l~~----lp~~~~~l~~L~~L~l~~c~ 683 (808)
|.|. .+...+...++|+.|+| ++|.+... +...+...++|++|++++|.
T Consensus 103 --------------N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 103 --------------NFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp --------------SCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred --------------CcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4444 24555667778888888 66766322 33445566788888887764
No 213
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.34 E-value=0.00082 Score=74.71 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=70.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
.+-|.|+|.+|+|||++|++++++....| +.+.. .. +. ....+.........+.....+++.+
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn~-~~---------l~----~~~~g~~~~~~~~~f~~A~~~~p~i 300 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGAFF---FLING-PE---------IM----SKLAGESESNLRKAFEEAEKNAPAI 300 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEEH-HH---------HH----TSCTTHHHHHHHHHHHHHHHTCSEE
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEEc-hH---------hh----hhhcchhHHHHHHHHHHHHhcCCcE
Confidence 44588999999999999999988753222 22221 11 10 0000000001111122223456789
Q ss_pred EEEecCCCH-------------HHHHHHHhccCC--CCCCCEEEEEeCchhhh-hh----cCCCeEEEecCCChhhHHHH
Q 041551 247 LVFDDVNNP-------------RQIESLIGHLDH--LASGSRVIITTRDKQVL-KN----CWAGQIYQMKELVYTDAQKL 306 (808)
Q Consensus 247 lVlDdv~~~-------------~~~~~l~~~l~~--~~~gs~IiiTTR~~~v~-~~----~~~~~~~~l~~L~~~ea~~L 306 (808)
|+||+++.. .....++..+.. ...+.+||.||...+.. .. ......+.++..+.++-.++
T Consensus 301 LfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~I 380 (489)
T 3hu3_A 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380 (489)
T ss_dssp EEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHH
T ss_pred EEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHH
Confidence 999998421 122333333321 12344556666655321 11 12345789999999999999
Q ss_pred HHHHhh
Q 041551 307 FSQYAF 312 (808)
Q Consensus 307 f~~~~~ 312 (808)
+..++.
T Consensus 381 L~~~~~ 386 (489)
T 3hu3_A 381 LQIHTK 386 (489)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 988763
No 214
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.29 E-value=9e-05 Score=71.25 Aligned_cols=84 Identities=13% Similarity=0.138 Sum_probs=37.4
Q ss_pred hhcccccceeccCCCCCCCC----CCC-CCCCCCCcEEecCCCCCCcc----ccccccCCCCcCEEec--CCCCCCCc--
Q 041551 529 VQDLVNLKEIDLSRSESLTK----LPD-LSRAKNLEILWLRGCLSLVE----THSTIQYLNKLEDLDL--DYCISLTS-- 595 (808)
Q Consensus 529 ~~~l~~L~~L~L~~n~~~~~----~p~-~~~l~~L~~L~L~~n~~l~~----~p~~~~~l~~L~~L~l--~~~~~l~~-- 595 (808)
+...++|++|+|++|.+... +.. +...++|++|+|++|..... +...+...++|++|+| ++| .++.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g 139 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNV 139 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHH
Confidence 34445555555555542211 111 23334555555555532211 2344455556666666 443 2332
Q ss_pred ---CCCcC-CCCCCCEEeccCC
Q 041551 596 ---LPTSI-HSKHLKELSLRGC 613 (808)
Q Consensus 596 ---lp~~~-~l~~L~~L~L~~~ 613 (808)
+...+ ..++|++|+|++|
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHhCCCcCEEeccCC
Confidence 11111 2356666666666
No 215
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0031 Score=68.46 Aligned_cols=147 Identities=18% Similarity=0.283 Sum_probs=81.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhh-hhccCHHHHHHHHHhhHhcCcccccHHHHHHH-Hccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREA-EETGGIKDLQKELLSDVLNDRILRDVRSQLNR-LARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~-~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~-L~~~~ 244 (808)
.+=|.++|++|.|||+||+++++.....| +.+.. .+. +...+-. ...++.+... -...+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~~-s~l~sk~~Ges---------------e~~ir~~F~~A~~~~P 275 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGANF---IFSPA-SGIVDKYIGES---------------ARIIREMFAYAKEHEP 275 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEEG-GGTCCSSSSHH---------------HHHHHHHHHHHHHSCS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeh-hhhccccchHH---------------HHHHHHHHHHHHhcCC
Confidence 56788999999999999999999875443 22221 111 1001100 0111112111 23578
Q ss_pred EEEEEecCCCH----------------HHHHHHHhccCCC--CCCCEEEEEeCchhhhhh-c----CCCeEEEecCCChh
Q 041551 245 VLLVFDDVNNP----------------RQIESLIGHLDHL--ASGSRVIITTRDKQVLKN-C----WAGQIYQMKELVYT 301 (808)
Q Consensus 245 ~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ 301 (808)
++|++|+++.. ..+..++..+... ..+..||.||...+.... . ..+..+.++.-+.+
T Consensus 276 ~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~ 355 (437)
T 4b4t_L 276 CIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEA 355 (437)
T ss_dssp EEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHH
T ss_pred ceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHH
Confidence 99999999631 1233444444322 234567777766654322 1 13456788888888
Q ss_pred hHHHHHHHHhhcCCC-CCchHHHHHHHHHHHhcCch
Q 041551 302 DAQKLFSQYAFRGGH-LDSSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 302 ea~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~glP 336 (808)
+-.++|..+.-+... ...++ ..+++.+.|.-
T Consensus 356 ~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 356 GRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp HHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred HHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 888888877633222 12222 45666666653
No 216
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.22 E-value=0.00067 Score=68.91 Aligned_cols=126 Identities=15% Similarity=0.199 Sum_probs=67.3
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHH-HccceEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNR-LARKMVL 246 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~-L~~~~~L 246 (808)
+-+.|+|.+|+||||||+.+++.....| +.+... ..... ..+. ....+..+.+. ....+.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~~~-~~~~~-------------~~~~-~~~~~~~~~~~a~~~~~~i 107 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISGS-DFVEM-------------FVGV-GASRVRDMFEQAKKAAPCI 107 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCE---EEECSC-SSTTS-------------CCCC-CHHHHHHHHHHHHTTCSEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEeHH-HHHHH-------------hhhh-hHHHHHHHHHHHHHcCCee
Confidence 3488999999999999999998764332 333211 00000 0000 00111222222 2345679
Q ss_pred EEEecCCCH----------------HHHHHHHhccCCC--CCCCEEEEEeCchhhh-hhc----CCCeEEEecCCChhhH
Q 041551 247 LVFDDVNNP----------------RQIESLIGHLDHL--ASGSRVIITTRDKQVL-KNC----WAGQIYQMKELVYTDA 303 (808)
Q Consensus 247 lVlDdv~~~----------------~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~-~~~----~~~~~~~l~~L~~~ea 303 (808)
+++|+++.. ..+..++..+... ..+..||.||...+.. ... .....+.++..+.++-
T Consensus 108 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r 187 (257)
T 1lv7_A 108 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 187 (257)
T ss_dssp EEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred ehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHH
Confidence 999998321 2233443333211 2345566677655422 111 2345778888888888
Q ss_pred HHHHHHHh
Q 041551 304 QKLFSQYA 311 (808)
Q Consensus 304 ~~Lf~~~~ 311 (808)
.+++..+.
T Consensus 188 ~~il~~~~ 195 (257)
T 1lv7_A 188 EQILKVHM 195 (257)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887665
No 217
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.21 E-value=0.0015 Score=68.30 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
...+.++|.+|+|||++|+.+++....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 457899999999999999999987644
No 218
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.20 E-value=0.0008 Score=64.16 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=22.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
.+.+.|+|.+|+|||+||+.+++....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999987644
No 219
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00038 Score=75.34 Aligned_cols=148 Identities=18% Similarity=0.196 Sum_probs=80.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHH-HccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNR-LARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~-L~~~~~ 245 (808)
.+-|.++|++|.|||.||++++++....|- .+....-.+...+-. ...++.+... -...++
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~~fi---~vs~s~L~sk~vGes---------------ek~ir~lF~~Ar~~aP~ 304 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDATFI---RVIGSELVQKYVGEG---------------ARMVRELFEMARTKKAC 304 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTCEEE---EEEGGGGCCCSSSHH---------------HHHHHHHHHHHHHTCSE
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCCCeE---EEEhHHhhcccCCHH---------------HHHHHHHHHHHHhcCCc
Confidence 567889999999999999999998765431 222110001000100 0111122111 235689
Q ss_pred EEEEecCCCH----------------HHHHHHHhccCCCC--CCCEEEEEeCchhhhhh-c----CCCeEEEecCCChhh
Q 041551 246 LLVFDDVNNP----------------RQIESLIGHLDHLA--SGSRVIITTRDKQVLKN-C----WAGQIYQMKELVYTD 302 (808)
Q Consensus 246 LlVlDdv~~~----------------~~~~~l~~~l~~~~--~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~e 302 (808)
+|++|+++.. ..+..++..+.... .+..||.||...+.... . ..+..+.++..+.++
T Consensus 305 IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~ 384 (467)
T 4b4t_H 305 IIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEG 384 (467)
T ss_dssp EEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHH
T ss_pred eEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHH
Confidence 9999998741 11233333333222 23345556655543211 1 345788888888888
Q ss_pred HHHHHHHHhhcCCC-CCchHHHHHHHHHHHhcCch
Q 041551 303 AQKLFSQYAFRGGH-LDSSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 303 a~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~glP 336 (808)
-.++|..++-+... ...+ .+.|++.+.|.-
T Consensus 385 R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 385 RANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp HHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred HHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 88999877632221 1122 245667777653
No 220
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.00044 Score=74.98 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=80.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhh-hhccCHHHHHHHHHhhHhcCcccccHHHHHHH-Hccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREA-EETGGIKDLQKELLSDVLNDRILRDVRSQLNR-LARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~-~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~-L~~~~ 244 (808)
.+-|.++|++|.|||.||++++++....|- .+. ..+. +...+.. ...++.+... -...+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~~f~---~v~-~s~l~~~~vGes---------------e~~ir~lF~~A~~~aP 275 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNATFL---KLA-APQLVQMYIGEG---------------AKLVRDAFALAKEKAP 275 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCEEE---EEE-GGGGCSSCSSHH---------------HHHHHHHHHHHHHHCS
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCCCEE---EEe-hhhhhhcccchH---------------HHHHHHHHHHHHhcCC
Confidence 567889999999999999999997654431 222 1111 1011100 0111112111 13467
Q ss_pred EEEEEecCCCH----------------HHHHHHHhccCCCC--CCCEEEEEeCchhhhhh-c----CCCeEEEecCCChh
Q 041551 245 VLLVFDDVNNP----------------RQIESLIGHLDHLA--SGSRVIITTRDKQVLKN-C----WAGQIYQMKELVYT 301 (808)
Q Consensus 245 ~LlVlDdv~~~----------------~~~~~l~~~l~~~~--~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ 301 (808)
++|++|+++.. ..+..++..+.... .+-.||.||...+.... . ..+..+.++.-+.+
T Consensus 276 ~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~ 355 (434)
T 4b4t_M 276 TIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSED 355 (434)
T ss_dssp EEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHH
T ss_pred eEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHH
Confidence 99999998531 11334555554333 23345557766544322 1 23457788888888
Q ss_pred hHHHHHHHHhhcCCC-CCchHHHHHHHHHHHhcCc
Q 041551 302 DAQKLFSQYAFRGGH-LDSSYTELTDKAIKYAQGV 335 (808)
Q Consensus 302 ea~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~gl 335 (808)
+-.++|..+.-+... ...+ ...+++.+.|.
T Consensus 356 ~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 356 SRAQILQIHSRKMTTDDDIN----WQELARSTDEF 386 (434)
T ss_dssp HHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSC
T ss_pred HHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 888888776633221 1222 24566677664
No 221
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.15 E-value=0.00092 Score=69.50 Aligned_cols=129 Identities=12% Similarity=0.088 Sum_probs=80.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh---cccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS---RHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARK 243 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~---~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~ 243 (808)
.+...++|++|.||||+|+.+++... ...+....+... ....++..+. ++........ ..++
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~---~~~~~id~ir-~li~~~~~~p-----------~~~~ 82 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GENIGIDDIR-TIKDFLNYSP-----------ELYT 82 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSCBCHHHHH-HHHHHHTSCC-----------SSSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC---cCCCCHHHHH-HHHHHHhhcc-----------ccCC
Confidence 46788999999999999999987521 122333444311 0112222221 1222211100 1245
Q ss_pred eEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCch-hhhhhcCCCeEEEecCCChhhHHHHHHHHh
Q 041551 244 MVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDK-QVLKNCWAGQIYQMKELVYTDAQKLFSQYA 311 (808)
Q Consensus 244 ~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~-~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 311 (808)
+-++|+|+++. .+..+.++..+....+.+.+|++|.+. .+....... .+++++++.++..+.+.+.+
T Consensus 83 ~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 83 RKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred ceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 67899999975 455677777776556677777776544 344444444 89999999999999988776
No 222
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.12 E-value=0.00035 Score=70.88 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=49.3
Q ss_pred cCCCCcCEEecCCCCCCCcCC---CcC-CCCCCCEEeccCCCCCCcccccccccccEEEecccCCeecCcccccCC--cC
Q 041551 577 QYLNKLEDLDLDYCISLTSLP---TSI-HSKHLKELSLRGCSNLKIFPEITSCHMWRLELTKVGIKELPSSIECLS--NL 650 (808)
Q Consensus 577 ~~l~~L~~L~l~~~~~l~~lp---~~~-~l~~L~~L~L~~~~~l~~~p~~~~~~L~~L~L~~n~i~~lp~~~~~l~--~L 650 (808)
.++++|+.|+|++|. +..++ ..+ .+++|+.|+|++| .|+.+ ..+..+. +|
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N----------------------~i~~~-~~l~~l~~l~L 222 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN----------------------ELKSE-RELDKIKGLKL 222 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS----------------------CCCSG-GGGGGGTTSCC
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCC----------------------ccCCc-hhhhhcccCCc
Confidence 457788888888853 44443 333 5666777666665 33333 1233333 88
Q ss_pred cEEEeecCCCcccccc-------cccCCCCCCEEEe
Q 041551 651 QYLYIWDCSELESISS-------SIFKLNSLESIDI 679 (808)
Q Consensus 651 ~~L~L~~n~~l~~lp~-------~~~~l~~L~~L~l 679 (808)
+.|+|++|++.+.+|. .+..+|+|+.||-
T Consensus 223 ~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 223 EELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 8888888888665552 3567888888764
No 223
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.10 E-value=0.0027 Score=65.68 Aligned_cols=27 Identities=33% Similarity=0.562 Sum_probs=23.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
.+.+.++|++|+|||+||+.+++....
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467889999999999999999998743
No 224
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.00053 Score=74.27 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=24.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
.+=|.++|++|.|||+||+++++.....|
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 56689999999999999999999775443
No 225
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.03 E-value=0.0014 Score=59.95 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=48.1
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhc-ccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEEE
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISR-HFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLLV 248 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~LlV 248 (808)
|.|+|.+|+|||++|+.+++.... ..+.+ +.... ....... ....+. ...-.|+
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v--~~~~~-~~~~~~~--------------------~~~~~~--a~~g~l~ 81 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFV--YRELT-PDNAPQL--------------------NDFIAL--AQGGTLV 81 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCE--EEECC-TTTSSCH--------------------HHHHHH--HTTSCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEE--EECCC-CCcchhh--------------------hcHHHH--cCCcEEE
Confidence 789999999999999999885322 22222 33211 1111011 001111 1234689
Q ss_pred EecCCC--HHHHHHHHhccCCCCCCCEEEEEeCch
Q 041551 249 FDDVNN--PRQIESLIGHLDHLASGSRVIITTRDK 281 (808)
Q Consensus 249 lDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~ 281 (808)
||+++. .+....+...+.......++|.||...
T Consensus 82 ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 82 LSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp EECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred EcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 999975 334445555443334566788877653
No 226
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.01 E-value=0.0067 Score=63.16 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.+.+.++|.+|+|||++|+.+++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999998764
No 227
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.98 E-value=0.0089 Score=64.73 Aligned_cols=98 Identities=14% Similarity=0.257 Sum_probs=67.5
Q ss_pred ccceEeecCCCCcccccch-hhcccccceeccCCCC--CCCCCCC--CCCCCCCcEEecCCCCCCcccc-ccccCCCCcC
Q 041551 510 EKLVSLKMPRSKVQQLWDD-VQDLVNLKEIDLSRSE--SLTKLPD--LSRAKNLEILWLRGCLSLVETH-STIQYLNKLE 583 (808)
Q Consensus 510 ~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~L~~n~--~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~ 583 (808)
..|+.+.+..+ ++.+... |.+|.+|+.+.+..|. .+..++. |.++.+|+.+.+..+ +..++ ..+..+.+|+
T Consensus 64 ~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 64 YVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELD 140 (394)
T ss_dssp SCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCC
T ss_pred CcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccc
Confidence 35888888754 7777554 8999999999998762 2455553 888999999888764 34444 4578899999
Q ss_pred EEecCCCCCCCcCCCcC--CCCCCCEEeccC
Q 041551 584 DLDLDYCISLTSLPTSI--HSKHLKELSLRG 612 (808)
Q Consensus 584 ~L~l~~~~~l~~lp~~~--~l~~L~~L~L~~ 612 (808)
.+.+.. .+..++... .+.+|+.+.+..
T Consensus 141 ~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 141 TVTIPE--GVTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp EEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred cccccc--eeeeecccceecccccccccccc
Confidence 999975 344554433 455566655543
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.97 E-value=0.0056 Score=62.25 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.0
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.|.|+|.+|+|||++|+.+++...
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTST
T ss_pred CEEEECCCCCcHHHHHHHHHHhcC
Confidence 477999999999999999998643
No 229
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.96 E-value=0.0028 Score=69.82 Aligned_cols=146 Identities=17% Similarity=0.194 Sum_probs=79.8
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhc-cCHHHHHHHHHhhHhcCcccccHHH-HHHHHccceEE
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEET-GGIKDLQKELLSDVLNDRILRDVRS-QLNRLARKMVL 246 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~-~~~~~l~~~ll~~~~~~~~~~~~~~-l~~~L~~~~~L 246 (808)
-|.|+|++|.|||+||+.++.+....| +.+.. .+.... .+. ....++. +.....+.+.+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f---~~is~-~~~~~~~~g~---------------~~~~~r~lf~~A~~~~p~I 111 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPF---FHISG-SDFVELFVGV---------------GAARVRDLFAQAKAHAPCI 111 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCE---EEEEG-GGTTTCCTTH---------------HHHHHHHHHHHHHHTCSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCe---eeCCH-HHHHHHHhcc---------------cHHHHHHHHHHHHhcCCCE
Confidence 478999999999999999998764332 22221 111100 000 0011111 22223457899
Q ss_pred EEEecCCCH----------------HHHHHHHhccCCC--CCCCEEEEEeCchhhhhh--c---CCCeEEEecCCChhhH
Q 041551 247 LVFDDVNNP----------------RQIESLIGHLDHL--ASGSRVIITTRDKQVLKN--C---WAGQIYQMKELVYTDA 303 (808)
Q Consensus 247 lVlDdv~~~----------------~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~--~---~~~~~~~l~~L~~~ea 303 (808)
|+||+++.. ..+..++..+... ..+..||.||...+.... . .....+.++..+.++-
T Consensus 112 LfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R 191 (476)
T 2ce7_A 112 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191 (476)
T ss_dssp EEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred EEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHH
Confidence 999998541 2244444433211 235566777776654321 1 2345788888888888
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHhcCch
Q 041551 304 QKLFSQYAFRGGHLDSSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 304 ~~Lf~~~~~~~~~~~~~~~~~~~~i~~~~~glP 336 (808)
.+++..++-........ ....+++.+.|..
T Consensus 192 ~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 192 KKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp HHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred HHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 88887766322111111 1244667777765
No 230
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.00066 Score=72.74 Aligned_cols=146 Identities=18% Similarity=0.209 Sum_probs=79.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhh-hhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREA-EETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~-~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~ 244 (808)
.+=|.++|++|.|||.||++++++....|- .+. ..+. +...+-. ...++.+.+.- ...+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi---~v~-~s~l~sk~vGes---------------ek~ir~lF~~Ar~~aP 276 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFL---RIV-GSELIQKYLGDG---------------PRLCRQIFKVAGENAP 276 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEE---EEE-SGGGCCSSSSHH---------------HHHHHHHHHHHHHTCS
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEE---EEE-HHHhhhccCchH---------------HHHHHHHHHHHHhcCC
Confidence 566899999999999999999998665432 122 1111 0000000 01112222211 3567
Q ss_pred EEEEEecCCCH----------------HHHHHHHhccCCC--CCCCEEEEEeCchhhhhh-c----CCCeEEEecCCChh
Q 041551 245 VLLVFDDVNNP----------------RQIESLIGHLDHL--ASGSRVIITTRDKQVLKN-C----WAGQIYQMKELVYT 301 (808)
Q Consensus 245 ~LlVlDdv~~~----------------~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ 301 (808)
++|++|+++.. ..+..++..+... ..+..||.||...+.... . ..+..+.++.-+.+
T Consensus 277 ~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~ 356 (437)
T 4b4t_I 277 SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356 (437)
T ss_dssp EEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHH
T ss_pred cEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHH
Confidence 99999998631 1233444333222 234455667766554322 1 12346778888888
Q ss_pred hHHHHHHHHhhcCCC-CCchHHHHHHHHHHHhcCc
Q 041551 302 DAQKLFSQYAFRGGH-LDSSYTELTDKAIKYAQGV 335 (808)
Q Consensus 302 ea~~Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~gl 335 (808)
+-.++|..+.-+... ...+ ...+++.+.|.
T Consensus 357 ~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 357 TKKKILGIHTSKMNLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp HHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSC
T ss_pred HHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCC
Confidence 888888877632221 1122 24566666665
No 231
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.94 E-value=0.00048 Score=71.90 Aligned_cols=36 Identities=19% Similarity=0.358 Sum_probs=28.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh-cccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS-RHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~-~~F~~~~~~~ 202 (808)
.+.+.|+|.+|+|||+||.++++... .+-..+.++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 35688999999999999999999776 5444455555
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.86 E-value=0.0054 Score=61.94 Aligned_cols=124 Identities=16% Similarity=0.202 Sum_probs=66.8
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHc-cceEEEE
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLA-RKMVLLV 248 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~-~~~~LlV 248 (808)
+.|+|.+|+||||||+.++..... ..+.+....-.....+. ....+..+.+... ....+++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~~~i~~ 113 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARV---PFITASGSDFVEMFVGV---------------GAARVRDLFETAKRHAPCIVF 113 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC---CEEEEEHHHHHHSCTTH---------------HHHHHHHHHHHHTTSSSEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC---CEEEeeHHHHHHHHhhH---------------HHHHHHHHHHHHHhcCCeEEE
Confidence 889999999999999999987642 22333311000000000 0011222222222 3468999
Q ss_pred EecCCCH----------------HHHHHHHhccCCCC--CCCEEEEEeCchhhhhhc-----CCCeEEEecCCChhhHHH
Q 041551 249 FDDVNNP----------------RQIESLIGHLDHLA--SGSRVIITTRDKQVLKNC-----WAGQIYQMKELVYTDAQK 305 (808)
Q Consensus 249 lDdv~~~----------------~~~~~l~~~l~~~~--~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~ 305 (808)
+|+++.. ..+..+...+.... ....++.||...+..... .....+.++..+.++-.+
T Consensus 114 ~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~ 193 (254)
T 1ixz_A 114 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQ 193 (254)
T ss_dssp EETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHH
T ss_pred ehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHH
Confidence 9998421 11233433332211 122344566666543221 234678888888888888
Q ss_pred HHHHHh
Q 041551 306 LFSQYA 311 (808)
Q Consensus 306 Lf~~~~ 311 (808)
++...+
T Consensus 194 il~~~~ 199 (254)
T 1ixz_A 194 ILRIHA 199 (254)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887665
No 233
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.74 E-value=0.0096 Score=61.03 Aligned_cols=124 Identities=15% Similarity=0.199 Sum_probs=67.0
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceEEEE
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMVLLV 248 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~LlV 248 (808)
+.|+|.+|+||||||+.++.... ...+.+... . +...... .....+..+.+.. ...+.+++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~-~---------~~~~~~~-----~~~~~i~~~~~~~~~~~~~i~~ 137 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR---VPFITASGS-D---------FVEMFVG-----VGAARVRDLFETAKRHAPCIVF 137 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHH-H---------HHHSTTT-----HHHHHHHHHHHHHHTSCSEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcC---CCEEEecHH-H---------HHHHHhh-----HHHHHHHHHHHHHHhcCCcEEe
Confidence 88999999999999999998764 223333311 0 0000000 0001122222222 23568999
Q ss_pred EecCCCH----------------HHHHHHHhccCCCCC--CCEEEEEeCchhhhhh-----cCCCeEEEecCCChhhHHH
Q 041551 249 FDDVNNP----------------RQIESLIGHLDHLAS--GSRVIITTRDKQVLKN-----CWAGQIYQMKELVYTDAQK 305 (808)
Q Consensus 249 lDdv~~~----------------~~~~~l~~~l~~~~~--gs~IiiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~ 305 (808)
+|+++.. ..+..+...+..... ...++.||...++... ......+.++..+.++-.+
T Consensus 138 iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~ 217 (278)
T 1iy2_A 138 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQ 217 (278)
T ss_dssp EETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHH
T ss_pred hhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHH
Confidence 9998421 123344443332222 2234446666554321 1245678888888888888
Q ss_pred HHHHHh
Q 041551 306 LFSQYA 311 (808)
Q Consensus 306 Lf~~~~ 311 (808)
++..++
T Consensus 218 il~~~~ 223 (278)
T 1iy2_A 218 ILRIHA 223 (278)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887665
No 234
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.69 E-value=0.00064 Score=69.51 Aligned_cols=126 Identities=13% Similarity=0.131 Sum_probs=65.9
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEEE
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLLV 248 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~LlV 248 (808)
-+.|+|.+|+|||+||+.++++....|-. +.. .... ....+.........+.......+.+|+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~~---v~~-~~~~-------------~~~~~~~~~~~~~~~~~a~~~~~~vl~ 108 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MGG-SSFI-------------EMFVGLGASRVRDLFETAKKQAPSIIF 108 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CCS-CTTT-------------TSCSSSCSSSSSTTHHHHHHSCSCEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEE---ech-HHHH-------------HhhcchHHHHHHHHHHHHHhcCCeEEE
Confidence 37799999999999999999976543321 110 0000 000010000001111112234568999
Q ss_pred EecCCCHH-----------------HHHHHHhccCCCC---CCCEEEEEeCchhhhh-hc----CCCeEEEecCCChhhH
Q 041551 249 FDDVNNPR-----------------QIESLIGHLDHLA---SGSRVIITTRDKQVLK-NC----WAGQIYQMKELVYTDA 303 (808)
Q Consensus 249 lDdv~~~~-----------------~~~~l~~~l~~~~---~gs~IiiTTR~~~v~~-~~----~~~~~~~l~~L~~~ea 303 (808)
||+++... .+..++..+.... ....||.||....... .. .....+.++..+.++-
T Consensus 109 iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r 188 (268)
T 2r62_A 109 IDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGR 188 (268)
T ss_dssp ESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTH
T ss_pred EeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHH
Confidence 99996431 1233333332211 2245666666553221 11 2235677888888888
Q ss_pred HHHHHHHh
Q 041551 304 QKLFSQYA 311 (808)
Q Consensus 304 ~~Lf~~~~ 311 (808)
.+++...+
T Consensus 189 ~~il~~~~ 196 (268)
T 2r62_A 189 VEILKVHI 196 (268)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88887665
No 235
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.69 E-value=0.01 Score=60.55 Aligned_cols=124 Identities=19% Similarity=0.237 Sum_probs=69.4
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceEEEE
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMVLLV 248 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~LlV 248 (808)
++|+|++|.||||||+.++..... ..+.+... +.... ...... ..+..+.+.. ...+.+++
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~---~~i~i~g~-~l~~~-~~~~~~-------------~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL---NFISVKGP-ELLNM-YVGESE-------------RAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC---EEEEEETT-TTCSS-TTHHHH-------------HHHHHHHHHHHHTCSEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC---CEEEEEcH-HHHhh-hhhHHH-------------HHHHHHHHHHHhcCCCeEe
Confidence 899999999999999999986543 23333321 10000 000000 1112222221 24568999
Q ss_pred EecCCCH-------------HHHHHHHhccCCC--CCCCEEEEEeCchhhhhhc-----CCCeEEEecCCChhhHHHHHH
Q 041551 249 FDDVNNP-------------RQIESLIGHLDHL--ASGSRVIITTRDKQVLKNC-----WAGQIYQMKELVYTDAQKLFS 308 (808)
Q Consensus 249 lDdv~~~-------------~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~ 308 (808)
+|+++.. .....+...+... ....-++.+|...++.... ..+..+.++..+.++-.++|.
T Consensus 109 ~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~ 188 (274)
T 2x8a_A 109 FDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILK 188 (274)
T ss_dssp EETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHH
T ss_pred eehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHH
Confidence 9998642 1123333333211 2233455677776654321 345678899899998888988
Q ss_pred HHh
Q 041551 309 QYA 311 (808)
Q Consensus 309 ~~~ 311 (808)
...
T Consensus 189 ~~~ 191 (274)
T 2x8a_A 189 TIT 191 (274)
T ss_dssp HHT
T ss_pred HHH
Confidence 765
No 236
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.55 E-value=0.013 Score=64.91 Aligned_cols=123 Identities=14% Similarity=0.140 Sum_probs=63.2
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhccc------CceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL- 240 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L- 240 (808)
.-+.|+|.+|+|||++|+.+++.+...+ ...++..+.. ....+. ....+..+.+.+
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----------------~~~~g~-~e~~~~~~~~~~~ 264 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----------------TKYRGE-FEDRLKKVMDEIR 264 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------------CTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------------ccccch-HHHHHHHHHHHHH
Confidence 3467999999999999999999864432 1122211111 000000 012223333333
Q ss_pred ccceEEEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhhhh---hc----CCCeEEEecCCChhhHHHHHHHHh
Q 041551 241 ARKMVLLVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQVLK---NC----WAGQIYQMKELVYTDAQKLFSQYA 311 (808)
Q Consensus 241 ~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~---~~----~~~~~~~l~~L~~~ea~~Lf~~~~ 311 (808)
..++.+|++| -..+..+.+.+.+. ....++|.+|....... .. .....+.++..+.++..+++...+
T Consensus 265 ~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 265 QAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 3467889999 22233334444433 22345555555443111 00 112468999999999999998765
No 237
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.51 E-value=0.0038 Score=72.92 Aligned_cols=148 Identities=17% Similarity=0.213 Sum_probs=79.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHH-HHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLN-RLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~-~L~~~~~ 245 (808)
.+-|.++|++|.|||+||++++++...+| +.+.. .+ +.....++ ....++.+.+ .....+.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~~-~~-------------l~sk~~ge-se~~lr~lF~~A~~~~Ps 299 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFF---FLING-PE-------------IMSKLAGE-SESNLRKAFEEAEKNAPA 299 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEEH-HH-------------HHSSCTTH-HHHHHHHHHHHHTTSCSE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEEh-HH-------------hhcccchH-HHHHHHHHHHHHHHcCCe
Confidence 56789999999999999999998765432 22321 11 00110000 0011222222 2245789
Q ss_pred EEEEecCCCH-------------HHHHHHHhccCCC--CCCCEEEEEeCchhhhh-hc----CCCeEEEecCCChhhHHH
Q 041551 246 LLVFDDVNNP-------------RQIESLIGHLDHL--ASGSRVIITTRDKQVLK-NC----WAGQIYQMKELVYTDAQK 305 (808)
Q Consensus 246 LlVlDdv~~~-------------~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~-~~----~~~~~~~l~~L~~~ea~~ 305 (808)
+|+||+++.. ..+..++..+... ..+..||.||...+... .. .....++++..+.++-.+
T Consensus 300 IIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~ 379 (806)
T 3cf2_A 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379 (806)
T ss_dssp EEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHH
T ss_pred EEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHH
Confidence 9999998641 1133333332211 12334455665543322 11 235678898889888888
Q ss_pred HHHHHhhcCCC-CCchHHHHHHHHHHHhcCch
Q 041551 306 LFSQYAFRGGH-LDSSYTELTDKAIKYAQGVP 336 (808)
Q Consensus 306 Lf~~~~~~~~~-~~~~~~~~~~~i~~~~~glP 336 (808)
+|..+.-+... ...+ ...+++.+.|.-
T Consensus 380 IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 380 ILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp HHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred HHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 88876632111 1122 345667777654
No 238
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.44 E-value=0.019 Score=63.45 Aligned_cols=90 Identities=13% Similarity=0.051 Sum_probs=56.1
Q ss_pred EEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEe---------Cc----h-----hhhhhcCCCeEEEecCCChhhHH
Q 041551 245 VLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITT---------RD----K-----QVLKNCWAGQIYQMKELVYTDAQ 304 (808)
Q Consensus 245 ~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTT---------R~----~-----~v~~~~~~~~~~~l~~L~~~ea~ 304 (808)
-++++|+++. .+..+.+...+...... .+|+.| .+ . .+... ...+.+++++.++..
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR---~~~~~~~~~~~~e~~ 372 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDR---VMIIRTMLYTPQEMK 372 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTT---EEEEECCCCCHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhh---cceeeCCCCCHHHHH
Confidence 3899999974 56677787776654444 344344 21 1 12222 245799999999999
Q ss_pred HHHHHHhhcCCCCCchHHHHHHHHHHHh-cCchhhHH
Q 041551 305 KLFSQYAFRGGHLDSSYTELTDKAIKYA-QGVPLALK 340 (808)
Q Consensus 305 ~Lf~~~~~~~~~~~~~~~~~~~~i~~~~-~glPLal~ 340 (808)
+.+..++-... ..-..+....|++.+ .|.|....
T Consensus 373 ~iL~~~~~~~~--~~~~~~~~~~i~~~a~~g~~r~a~ 407 (456)
T 2c9o_A 373 QIIKIRAQTEG--INISEEALNHLGEIGTKTTLRYSV 407 (456)
T ss_dssp HHHHHHHHHHT--CCBCHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhC--CCCCHHHHHHHHHHccCCCHHHHH
Confidence 99988762111 122345567788888 78776543
No 239
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.44 E-value=0.016 Score=60.22 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.|.|+|.+|+|||++|+.+++..
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHS
T ss_pred cEEEECCCCchHHHHHHHHHHhC
Confidence 47799999999999999999854
No 240
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.43 E-value=0.015 Score=68.78 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=68.3
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLL 247 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~Ll 247 (808)
..+.++|.+|+|||++|+.+++.....-...+.+.. .+........ .......++ ....-+|
T Consensus 522 ~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~-s~~~~~~~~~--------------~~~l~~~~~---~~~~~vl 583 (758)
T 3pxi_A 522 GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDM-SEYMEKHSTS--------------GGQLTEKVR---RKPYSVV 583 (758)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEG-GGGCSSCCCC-----------------CHHHHH---HCSSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEec-hhcccccccc--------------cchhhHHHH---hCCCeEE
Confidence 468999999999999999999876433233344432 2111111000 001111111 1234589
Q ss_pred EEecCCC--HHHHHHHHhccCC-----------CCCCCEEEEEeCch-----hh----hhhc------CCCeEEEecCCC
Q 041551 248 VFDDVNN--PRQIESLIGHLDH-----------LASGSRVIITTRDK-----QV----LKNC------WAGQIYQMKELV 299 (808)
Q Consensus 248 VlDdv~~--~~~~~~l~~~l~~-----------~~~gs~IiiTTR~~-----~v----~~~~------~~~~~~~l~~L~ 299 (808)
+||+++. .+....|...+.. ...+.+||+||... .+ .... ....++.+.+++
T Consensus 584 ~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~ 663 (758)
T 3pxi_A 584 LLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLE 663 (758)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--C
T ss_pred EEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCC
Confidence 9999974 3444555444322 12356888888731 11 0001 223588899999
Q ss_pred hhhHHHHHHHHh
Q 041551 300 YTDAQKLFSQYA 311 (808)
Q Consensus 300 ~~ea~~Lf~~~~ 311 (808)
.++-.+++...+
T Consensus 664 ~~~~~~i~~~~l 675 (758)
T 3pxi_A 664 KKHLTEIVSLMS 675 (758)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988887776554
No 241
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.43 E-value=0.0048 Score=58.78 Aligned_cols=128 Identities=19% Similarity=0.151 Sum_probs=65.8
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhH--------hcCc----c----ccc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDV--------LNDR----I----LRD 232 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~--------~~~~----~----~~~ 232 (808)
.|.|++-.|-||||.|...+-+...+=-.+.++.-++.. ...+-..+.+.+.-.. .... + ...
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 466777777999999999888766554455555433211 1222233333321000 0000 0 133
Q ss_pred HHHHHHHHcc-ceEEEEEecCCCH-----HHHHHHHhccCCCCCCCEEEEEeCchhhhhhcCCCeEEEecC
Q 041551 233 VRSQLNRLAR-KMVLLVFDDVNNP-----RQIESLIGHLDHLASGSRVIITTRDKQVLKNCWAGQIYQMKE 297 (808)
Q Consensus 233 ~~~l~~~L~~-~~~LlVlDdv~~~-----~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l~~ 297 (808)
....++.+.+ +-=|||||++... -..+++...+........||+|+|...-.-.-.++.+-++..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecc
Confidence 4445555544 4569999998331 112233333333345678999999874321112344555544
No 242
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.40 E-value=0.0028 Score=65.36 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=41.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEec-chhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN-VREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~-~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~ 245 (808)
-+++.|+|++|+||||||.+++.. .-..+.|+.. ..+. .+ . ...+....++.+.+.+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~---v~----------~-~~~~le~~l~~i~~~l~~~~- 184 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEP---LS----------G-YNTDFNVFVDDIARAMLQHR- 184 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCS---ST----------T-CBCCHHHHHHHHHHHHHHCS-
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhh---hh----------h-hhcCHHHHHHHHHHHHhhCC-
Confidence 457789999999999999999886 1123455553 0100 00 0 00111123344555565556
Q ss_pred EEEEecCCC
Q 041551 246 LLVFDDVNN 254 (808)
Q Consensus 246 LlVlDdv~~ 254 (808)
++|+|++..
T Consensus 185 LLVIDsI~a 193 (331)
T 2vhj_A 185 VIVIDSLKN 193 (331)
T ss_dssp EEEEECCTT
T ss_pred EEEEecccc
Confidence 999999865
No 243
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.35 E-value=0.022 Score=63.05 Aligned_cols=121 Identities=14% Similarity=0.166 Sum_probs=68.1
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHc----cceE
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLA----RKMV 245 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~----~~~~ 245 (808)
|.|+|.+|.||||||+.++..... ..+.+... +..... . ......++..++ ..+.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~~---~~i~i~g~-~~~~~~-~----------------g~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEARV---PFITASGS-DFVEMF-V----------------GVGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTTC---CEEEEEGG-GGTSSC-T----------------THHHHHHHHHTTTSSSSSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC---CEEEEehh-HHHHhh-h----------------hhHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999987642 22333321 110000 0 001111222222 2357
Q ss_pred EEEEecCCCH----------------HHHHHHHhccCCC--CCCCEEEEEeCchhhhhh-c----CCCeEEEecCCChhh
Q 041551 246 LLVFDDVNNP----------------RQIESLIGHLDHL--ASGSRVIITTRDKQVLKN-C----WAGQIYQMKELVYTD 302 (808)
Q Consensus 246 LlVlDdv~~~----------------~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~e 302 (808)
++++|+++.. ..+..++..+... ..+..|+.||...+.... . ..+..+.++..+.++
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~ 205 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 205 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHH
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHH
Confidence 9999998521 1234454444322 223445556666654322 1 234578899889888
Q ss_pred HHHHHHHHh
Q 041551 303 AQKLFSQYA 311 (808)
Q Consensus 303 a~~Lf~~~~ 311 (808)
-.+++..++
T Consensus 206 R~~IL~~~~ 214 (499)
T 2dhr_A 206 REQILRIHA 214 (499)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 888887765
No 244
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.34 E-value=0.011 Score=70.90 Aligned_cols=130 Identities=14% Similarity=0.112 Sum_probs=64.0
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhccc------CceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLA 241 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~ 241 (808)
+-+.++|.+|+|||+||+.+++++.... ...++..+...... +. ... ......+..+.+.+.
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--g~---------~~~-g~~~~~l~~~~~~~~ 259 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--GA---------KYR-GEFEERLKAVIQEVV 259 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------------------CHHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--cC---------ccc-hHHHHHHHHHHHHHH
Confidence 3478999999999999999999764321 22222221111000 00 000 000122233333332
Q ss_pred --cceEEEEEecCCCHH----------HHHHHHhccCCCCCCCEEEEEeCchhh-----hhhc-CCCeEEEecCCChhhH
Q 041551 242 --RKMVLLVFDDVNNPR----------QIESLIGHLDHLASGSRVIITTRDKQV-----LKNC-WAGQIYQMKELVYTDA 303 (808)
Q Consensus 242 --~~~~LlVlDdv~~~~----------~~~~l~~~l~~~~~gs~IiiTTR~~~v-----~~~~-~~~~~~~l~~L~~~ea 303 (808)
+++.+|++|+++... ..+.+.+.+. ..+..+|.+|..... .... .....+.+++++.++.
T Consensus 260 ~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~ 337 (854)
T 1qvr_A 260 QSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEET 337 (854)
T ss_dssp TTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHH
T ss_pred hcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHH
Confidence 367899999997532 1122333322 123445555544322 1111 1123588999999999
Q ss_pred HHHHHHHh
Q 041551 304 QKLFSQYA 311 (808)
Q Consensus 304 ~~Lf~~~~ 311 (808)
.+++....
T Consensus 338 ~~iL~~~~ 345 (854)
T 1qvr_A 338 ISILRGLK 345 (854)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99987543
No 245
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.29 E-value=0.0025 Score=58.16 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.5
Q ss_pred EEEeecCCCcHhHHHHHHHHHh
Q 041551 170 IWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~ 191 (808)
|.|+|.+|+|||++|+.+++..
T Consensus 30 vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCTT
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 7799999999999999888653
No 246
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.22 E-value=0.074 Score=50.18 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.2
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.++|+|..|+|||||++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998653
No 247
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.19 E-value=0.037 Score=59.36 Aligned_cols=120 Identities=16% Similarity=0.239 Sum_probs=56.7
Q ss_pred CCCCCCCcEEecCCCCCCccc-cccccCCCCcCEEecCCCCCCCcCCCcC--CCCCCCEEeccCCCCCCcccccccc---
Q 041551 552 LSRAKNLEILWLRGCLSLVET-HSTIQYLNKLEDLDLDYCISLTSLPTSI--HSKHLKELSLRGCSNLKIFPEITSC--- 625 (808)
Q Consensus 552 ~~~l~~L~~L~L~~n~~l~~~-p~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l~~L~~L~L~~~~~l~~~p~~~~~--- 625 (808)
+....+|+.+.+..+ +..+ ...+.++..|+.+.+.. .++.++... ++.+|+.+.+..+ +..++.....
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~ 286 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCT
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCC--CccEeCccccceeehhcccccccc--ceecccccccccc
Confidence 444555555555442 2222 22345556666666654 244444433 4455666555432 3333322111
Q ss_pred cccEEEecccCCeecCc-ccccCCcCcEEEeecCCCcccccc-cccCCCCCCEEEe
Q 041551 626 HMWRLELTKVGIKELPS-SIECLSNLQYLYIWDCSELESISS-SIFKLNSLESIDI 679 (808)
Q Consensus 626 ~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~l~~lp~-~~~~l~~L~~L~l 679 (808)
.|+.+.+.++.++.++. .|.++++|+.+.|..+ +..++. .|.++++|+.+.+
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 15555555555555543 3556666666666332 233432 3555555555544
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.10 E-value=0.037 Score=65.48 Aligned_cols=127 Identities=16% Similarity=0.205 Sum_probs=69.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc------cCceEEEecchhhh----hccCHHHHHHHHHhhHhcCcccccHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH------FEGSYFAQNVREAE----ETGGIKDLQKELLSDVLNDRILRDVRSQ 236 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~------F~~~~~~~~~~~~~----~~~~~~~l~~~ll~~~~~~~~~~~~~~l 236 (808)
..-+.|+|.+|+|||++|+.+++++... ....+|..+..... ...... +.+..+
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e----------------~~l~~~ 270 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE----------------KRFKAL 270 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHH----------------HHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHH----------------HHHHHH
Confidence 3457899999999999999999876332 12333332211110 000111 222333
Q ss_pred HHHHc-cceEEEEEecCCCH----------HHH-HHHHhccCCCCCCCEEEEEeCchhhhhhc-------CCCeEEEecC
Q 041551 237 LNRLA-RKMVLLVFDDVNNP----------RQI-ESLIGHLDHLASGSRVIITTRDKQVLKNC-------WAGQIYQMKE 297 (808)
Q Consensus 237 ~~~L~-~~~~LlVlDdv~~~----------~~~-~~l~~~l~~~~~gs~IiiTTR~~~v~~~~-------~~~~~~~l~~ 297 (808)
.+.+. .++.+|++|+++.. .+. +.+...+. ..+.++|.+|......... .....+.++.
T Consensus 271 ~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~ 348 (758)
T 1r6b_X 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITE 348 (758)
T ss_dssp HHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCC
T ss_pred HHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCC
Confidence 33333 35689999999753 222 23333322 2345666666544321111 1123688999
Q ss_pred CChhhHHHHHHHHh
Q 041551 298 LVYTDAQKLFSQYA 311 (808)
Q Consensus 298 L~~~ea~~Lf~~~~ 311 (808)
.+.++..+++....
T Consensus 349 p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 349 PSIEETVQIINGLK 362 (758)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999998887654
No 249
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.00 E-value=0.0074 Score=68.16 Aligned_cols=136 Identities=13% Similarity=0.202 Sum_probs=65.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
...+.++|++|+||||||+.++......|-.+. +..... ...+....+...... ...+...........-+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~-~~~~~~---~~~~~g~~~~~ig~~-----~~~~~~~~~~a~~~~~v 178 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS-LGGVRD---ESEIRGHRRTYVGAM-----PGRIIQGMKKAGKLNPV 178 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC-CCC----------------------------CHHHHHHTTCSSSEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE-ecccch---hhhhhhHHHHHhccC-----chHHHHHHHHhhccCCE
Confidence 567999999999999999999987644332111 110000 000000000010000 01122222222223348
Q ss_pred EEEecCCCHH------HHHHHHhccCCCC---------------CCCEEEEEeCchhhhh-h-cCCCeEEEecCCChhhH
Q 041551 247 LVFDDVNNPR------QIESLIGHLDHLA---------------SGSRVIITTRDKQVLK-N-CWAGQIYQMKELVYTDA 303 (808)
Q Consensus 247 lVlDdv~~~~------~~~~l~~~l~~~~---------------~gs~IiiTTR~~~v~~-~-~~~~~~~~l~~L~~~ea 303 (808)
++||+++... ....++..+.... ....||.||....... . .....++.+++++.++-
T Consensus 179 l~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~ 258 (543)
T 3m6a_A 179 FLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEK 258 (543)
T ss_dssp EEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHH
T ss_pred EEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHH
Confidence 8899997532 1234444432111 2345666665543211 0 01114678999999988
Q ss_pred HHHHHHHh
Q 041551 304 QKLFSQYA 311 (808)
Q Consensus 304 ~~Lf~~~~ 311 (808)
.+++..+.
T Consensus 259 ~~Il~~~l 266 (543)
T 3m6a_A 259 LEIVKDHL 266 (543)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHH
Confidence 88887654
No 250
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.00 E-value=0.012 Score=57.75 Aligned_cols=33 Identities=18% Similarity=0.036 Sum_probs=26.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
-.+++|.|.+|+||||||..++. ..-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 56899999999999999999987 2224566665
No 251
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.91 E-value=0.11 Score=54.82 Aligned_cols=154 Identities=12% Similarity=-0.038 Sum_probs=98.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh-cccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS-RHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~-~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~ 245 (808)
.++..++|..|.||++.|..+.+.+. ..|+....+. .. ...++.++....... -+-+.+-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~---------------plf~~~k 78 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-ID---PNTDWNAIFSLCQAM---------------SLFASRQ 78 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CC---TTCCHHHHHHHHHHH---------------HHCCSCE
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ec---CCCCHHHHHHHhcCc---------------CCccCCe
Confidence 56788999999999999999998654 3344321121 11 123444443332111 1235667
Q ss_pred EEEEecCCC---HHHHHHHHhccCCCCCCCEEEEEeCc-------hhhhhhc-CCCeEEEecCCChhhHHHHHHHHhhcC
Q 041551 246 LLVFDDVNN---PRQIESLIGHLDHLASGSRVIITTRD-------KQVLKNC-WAGQIYQMKELVYTDAQKLFSQYAFRG 314 (808)
Q Consensus 246 LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IiiTTR~-------~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 314 (808)
++|+|+++. .+..+.+...+....+++.+|++|-. ..+.... ....+++..+++.++..+.+.+.+-..
T Consensus 79 vvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (343)
T 1jr3_D 79 TLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQL 158 (343)
T ss_dssp EEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHc
Confidence 889999865 35667777777665667877776643 2344332 334788999999999998888876322
Q ss_pred CCCCchHHHHHHHHHHHhcCchhhHHH
Q 041551 315 GHLDSSYTELTDKAIKYAQGVPLALKV 341 (808)
Q Consensus 315 ~~~~~~~~~~~~~i~~~~~glPLal~~ 341 (808)
+ ..-..+.+..+++.++|...++..
T Consensus 159 g--~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 159 N--LELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp T--CEECHHHHHHHHHSSTTCHHHHHH
T ss_pred C--CCCCHHHHHHHHHHhchHHHHHHH
Confidence 2 223346678888999998876654
No 252
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.82 E-value=0.042 Score=64.89 Aligned_cols=123 Identities=14% Similarity=0.124 Sum_probs=63.9
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhccc------CceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHF------EGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL- 240 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L- 240 (808)
.-+.++|.+|+|||++|+.+++.+.... ...++..+. .....+ +....+..+.+..
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----------------g~~~~G-~~e~~l~~~~~~~~ 264 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----------------GTKYRG-EFEDRLKKVMDEIR 264 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------------------CTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc----------------cccccc-hHHHHHHHHHHHHH
Confidence 3478999999999999999999763321 222221111 000000 0112223333322
Q ss_pred ccceEEEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhhhhhc-------CCCeEEEecCCChhhHHHHHHHHh
Q 041551 241 ARKMVLLVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQVLKNC-------WAGQIYQMKELVYTDAQKLFSQYA 311 (808)
Q Consensus 241 ~~~~~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~~ 311 (808)
..++.+|++| ...+....+.+.+. ....++|.||......... .....+.++..+.++..+++....
T Consensus 265 ~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 265 QAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 3567899999 22233334444433 2345566666544421100 112568999999999999998655
No 253
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.70 E-value=0.029 Score=60.18 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
...+.++|.+|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999998764
No 254
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=95.67 E-value=0.0059 Score=52.27 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=45.3
Q ss_pred CcccEEecCccccCCCChHHHHHHHHHhCCcceEeeCCcCCCCcchHHHHHHHHhhcceeEEecccccchhhhHHHHHHH
Q 041551 23 NKYDVFLSFRGEDTRDNFTSHLYSALWHNNIETFIDNDLKRGDEISQSLLDTIEASAISIIIFSERYASSGWCLDELSKI 102 (808)
Q Consensus 23 ~~~dvflSy~~~D~~~~f~~~l~~~l~~~g~~~~~d~~l~~g~~~~~~i~~ai~~s~~~v~v~S~~y~~s~~c~~el~~~ 102 (808)
.+|.|||||+.+|..+.|+..| .+.|+. |.| +.|+.+.+.|+..++.-..|.||..|+..+
T Consensus 3 ~~~~lFISh~~~d~~~~L~~~l----~~~~f~-~~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVEDYRVFLERL----EQSGLE-WRP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHHHHHHHHHH----HHHCSC-EEE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhHHHHHHHHH----hCCCCe-eec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 4789999999999333333333 455664 333 567788888888888888999999999754
Q ss_pred H
Q 041551 103 F 103 (808)
Q Consensus 103 ~ 103 (808)
.
T Consensus 64 ~ 64 (111)
T 1eiw_A 64 R 64 (111)
T ss_dssp T
T ss_pred H
Confidence 3
No 255
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.64 E-value=0.0056 Score=58.41 Aligned_cols=109 Identities=14% Similarity=-0.020 Sum_probs=52.5
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEEE
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVLL 247 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~Ll 247 (808)
+++.|+|..|+||||++.+++++...+-..+.++....+ ...+...+...+.... ..........+.+.+.++.-+|
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d--~r~~~~~i~s~~g~~~-~~~~~~~~~~~~~~~~~~~dvv 80 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKID--SRYHSTMIVSHSGNGV-EAHVIERPEEMRKYIEEDTRGV 80 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-------CCCEECC----CE-ECEEESSGGGGGGGCCTTEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccc--cccCcccEEecCCCce-eeEEECCHHHHHHHhcCCCCEE
Confidence 467899999999999998888765433223333321110 0000000000000000 0000011222233333456799
Q ss_pred EEecCCCH--HHHHHHHhccCCCCCCCEEEEEeCchh
Q 041551 248 VFDDVNNP--RQIESLIGHLDHLASGSRVIITTRDKQ 282 (808)
Q Consensus 248 VlDdv~~~--~~~~~l~~~l~~~~~gs~IiiTTR~~~ 282 (808)
++|.+... +.++.+....+ .|..|++|.+..+
T Consensus 81 iIDE~Q~~~~~~~~~l~~l~~---~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 81 FIDEVQFFNPSLFEVVKDLLD---RGIDVFCAGLDLT 114 (184)
T ss_dssp EECCGGGSCTTHHHHHHHHHH---TTCEEEEEEESBC
T ss_pred EEECcccCCHHHHHHHHHHHH---CCCCEEEEeeccc
Confidence 99998653 34444432322 2778999888543
No 256
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.57 E-value=0.027 Score=55.65 Aligned_cols=36 Identities=22% Similarity=0.140 Sum_probs=27.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
-.+++|.|.+|+|||||++.++......=..+.|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 468999999999999999999975543323455554
No 257
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.55 E-value=0.011 Score=59.69 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=61.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhh-HhcCcccccHHHHHHHHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSD-VLNDRILRDVRSQLNRLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~-~~~~~~~~~~~~l~~~L~~~~~ 245 (808)
-.+++|+|..|.|||||++.+...+...+...+++....-........ .+..+ ..+.+.......+...|...+=
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~----~~v~q~~~gl~~~~l~~~la~aL~~~p~ 100 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK----SIVNQREVGEDTKSFADALRAALREDPD 100 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS----SEEEEEEBTTTBSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc----eeeeHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 568999999999999999999886554434555443210000000000 00000 0000111223445555666777
Q ss_pred EEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhh
Q 041551 246 LLVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQV 283 (808)
Q Consensus 246 LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v 283 (808)
++++|...|.+....+.... ..|..|++||-+.+.
T Consensus 101 illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 101 VIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp EEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred EEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 89999998777665554432 346678888877653
No 258
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.50 E-value=0.0065 Score=57.46 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=22.3
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
++|.|.|++|+||||+|+.+..+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998754
No 259
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.49 E-value=0.044 Score=53.96 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=27.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc------ccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR------HFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~------~F~~~~~~~ 202 (808)
-.+++|+|..|+|||||++.++..... .-...+|+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 568999999999999999999874322 123466665
No 260
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.48 E-value=0.017 Score=56.63 Aligned_cols=106 Identities=18% Similarity=0.083 Sum_probs=58.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcC-c--ccccHHHHHHHHc--
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLND-R--ILRDVRSQLNRLA-- 241 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~-~--~~~~~~~l~~~L~-- 241 (808)
-.++.|+|..|.||||++..++++...+-..+..+....+.. +... +...+... . .......+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r---~~~~----i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR---SIRN----IQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG---GCSS----CCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch---HHHH----HHHhcCCCccccccCCHHHHHHHHHHH
Confidence 467889999999999999999998766544555553211110 1001 11111100 0 0122233333333
Q ss_pred --c-ceEEEEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchh
Q 041551 242 --R-KMVLLVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQ 282 (808)
Q Consensus 242 --~-~~~LlVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~ 282 (808)
+ +.-+||+|.+.. .++++.+....+ .|-.||+|-+..+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHHHHHh---CCCeEEEEecccc
Confidence 2 345999999864 345554433211 2778999999654
No 261
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.35 E-value=0.065 Score=56.26 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.5
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
-+.++|.+|+|||+||+.+++.....
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 47899999999999999999876543
No 262
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.28 E-value=0.0083 Score=63.59 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=65.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceE-EEecchhhhhccCHHHHHHHHHhhH-hcCcccccHHHHHHHHccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSY-FAQNVREAEETGGIKDLQKELLSDV-LNDRILRDVRSQLNRLARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~-~~~~~~~~~~~~~~~~l~~~ll~~~-~~~~~~~~~~~l~~~L~~~~ 244 (808)
-.+++|+|..|.|||||.+.+...+.......+ .+.+..+...... .....+. .+.........+...|...+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~-----~~~v~q~~~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESK-----KCLVNQREVHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCS-----SSEEEEEEBTTTBSCHHHHHHHHTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcc-----ccceeeeeeccccCCHHHHHHHHhhhCc
Confidence 347999999999999999999886554333333 3322111100000 0000000 00111133446777788889
Q ss_pred EEEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchhhh
Q 041551 245 VLLVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQVL 284 (808)
Q Consensus 245 ~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~ 284 (808)
=+|++|.+.+.+.++.+.... ..|..||+||-..+.+
T Consensus 198 dvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 198 DIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999999999988877655542 3467789999876554
No 263
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.27 E-value=0.047 Score=64.68 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=67.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHH-HHHccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQL-NRLARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~-~~L~~~~~ 245 (808)
.+.|.|+|.+|+||||||+.++......| +.+....-.+...+ .. ...+..+. ......+.
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~~~~l~~~~~g--~~-------------~~~l~~vf~~a~~~~p~ 299 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGAFF---FLINGPEIMSKLAG--ES-------------ESNLRKAFEEAEKNAPA 299 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEEHHHHSSSSTT--HH-------------HHHHHHHHHHHHHHCSE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEEchHhhhhhhh--hH-------------HHHHHHHHHHHHhcCCc
Confidence 45689999999999999999998764433 23321000000000 00 01111111 22234678
Q ss_pred EEEEecCCCH-------------HHHHHHHhccCCC--CCCCEEEEEeCchhhhhh-c----CCCeEEEecCCChhhHHH
Q 041551 246 LLVFDDVNNP-------------RQIESLIGHLDHL--ASGSRVIITTRDKQVLKN-C----WAGQIYQMKELVYTDAQK 305 (808)
Q Consensus 246 LlVlDdv~~~-------------~~~~~l~~~l~~~--~~gs~IiiTTR~~~v~~~-~----~~~~~~~l~~L~~~ea~~ 305 (808)
++++|+++.. .....+...+... ..+..+|.||...+-... . .....+.+...+.++-.+
T Consensus 300 il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~ 379 (806)
T 1ypw_A 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379 (806)
T ss_dssp EEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHH
T ss_pred EEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHH
Confidence 9999998421 1122333222211 234455556655432211 1 123567788888888888
Q ss_pred HHHHHh
Q 041551 306 LFSQYA 311 (808)
Q Consensus 306 Lf~~~~ 311 (808)
++...+
T Consensus 380 il~~~~ 385 (806)
T 1ypw_A 380 ILQIHT 385 (806)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 888765
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.23 E-value=0.0099 Score=55.74 Aligned_cols=25 Identities=20% Similarity=0.132 Sum_probs=22.2
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.+|+|.|++|+||||+|+.++.++.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988754
No 265
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.22 E-value=0.0098 Score=55.95 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVF 188 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~ 188 (808)
-.+++|+|..|.|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4579999999999999999643
No 266
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.02 E-value=0.2 Score=53.53 Aligned_cols=121 Identities=14% Similarity=0.173 Sum_probs=66.5
Q ss_pred hhcccccceeccCCCCCCCCCCC--CCCCCCCcEEecCCCCCCcccc-ccccCCCCcCEEecCCCCCCCcCCCcC--CCC
Q 041551 529 VQDLVNLKEIDLSRSESLTKLPD--LSRAKNLEILWLRGCLSLVETH-STIQYLNKLEDLDLDYCISLTSLPTSI--HSK 603 (808)
Q Consensus 529 ~~~l~~L~~L~L~~n~~~~~~p~--~~~l~~L~~L~L~~n~~l~~~p-~~~~~l~~L~~L~l~~~~~l~~lp~~~--~l~ 603 (808)
+..+.+|+.+.+..+ +..++. +.++.+|+.+.+..+ +..+. ..+.++.+|+.+.+.. .+..++... +++
T Consensus 213 f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~ 286 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCS 286 (379)
T ss_dssp TTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCT
T ss_pred cccccccceeeeccc--eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceecccccccccc
Confidence 445555666665543 222332 556666666666543 22332 3355666666666654 355555443 556
Q ss_pred CCCEEeccCCCCCCccccccc-c--cccEEEecccCCeecCc-ccccCCcCcEEEeec
Q 041551 604 HLKELSLRGCSNLKIFPEITS-C--HMWRLELTKVGIKELPS-SIECLSNLQYLYIWD 657 (808)
Q Consensus 604 ~L~~L~L~~~~~l~~~p~~~~-~--~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~ 657 (808)
+|+.+.+.++ .++.++.... . .|+.+.|.. .++.++. .|.++++|+.+.+..
T Consensus 287 ~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 287 NLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccc-ccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEECC
Confidence 6666666544 2333333221 1 266666653 3667754 488889999888754
No 267
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.01 E-value=0.012 Score=55.97 Aligned_cols=26 Identities=23% Similarity=0.492 Sum_probs=22.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.+.|.|+|++|+||||+|+.++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999998763
No 268
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.98 E-value=0.04 Score=66.03 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+.|+|.+|+|||++|+.+++...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999998763
No 269
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.98 E-value=0.013 Score=56.67 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=23.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.++|+|+|++|+||||+|+.++.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999998763
No 270
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.95 E-value=0.026 Score=66.73 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=22.0
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+.++|.+|+|||++|+.+++..
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999999876
No 271
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.88 E-value=0.089 Score=50.91 Aligned_cols=88 Identities=18% Similarity=0.105 Sum_probs=45.2
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccCceEEEec---chhh-hhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccce
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN---VREA-EETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKM 244 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~---~~~~-~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~ 244 (808)
+|.|.|++|+||+|.|+.++.++. ...++. +++. .....+....+.....-.-..+.-....+.+++....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g-----~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~ 76 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG-----FVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHG 76 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC-----CeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCC
Confidence 478999999999999999997642 223331 1111 1111111122222221111112233455666775544
Q ss_pred EEEEEecCC-CHHHHHHHH
Q 041551 245 VLLVFDDVN-NPRQIESLI 262 (808)
Q Consensus 245 ~LlVlDdv~-~~~~~~~l~ 262 (808)
. +|||..- +..|.+.|.
T Consensus 77 ~-~ilDGfPRt~~Qa~~l~ 94 (206)
T 3sr0_A 77 N-VIFDGFPRTVKQAEALD 94 (206)
T ss_dssp C-EEEESCCCSHHHHHHHH
T ss_pred c-eEecCCchhHHHHHHHH
Confidence 3 6899984 455555543
No 272
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.83 E-value=0.033 Score=49.60 Aligned_cols=34 Identities=9% Similarity=0.085 Sum_probs=14.9
Q ss_pred cCcEEEeecCCCcccccc-cccCCCCCCEEEeecCC
Q 041551 649 NLQYLYIWDCSELESISS-SIFKLNSLESIDISNCS 683 (808)
Q Consensus 649 ~L~~L~L~~n~~l~~lp~-~~~~l~~L~~L~l~~c~ 683 (808)
+|+.|+|++|.+ ..+|. .|..+++|+.|+|++|+
T Consensus 32 ~l~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNL-TALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCC-SSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcC-CccChhhhhhccccCEEEecCCC
Confidence 344444444443 33332 23444455555555443
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.82 E-value=0.013 Score=54.91 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.6
Q ss_pred eEEEEeecCCCcHhHHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
.+|+|.|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 47899999999999999999 43
No 274
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.80 E-value=0.028 Score=53.68 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=23.1
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
++|.|.|++|+||||+|+.++.++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999987754
No 275
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.74 E-value=0.063 Score=56.59 Aligned_cols=36 Identities=22% Similarity=0.151 Sum_probs=29.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
-.++.|.|.+|+||||||.+++......=..++|+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 578999999999999999999987654434567776
No 276
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.64 E-value=0.11 Score=50.93 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=22.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999987654
No 277
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.56 E-value=0.019 Score=54.18 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=20.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 278
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.52 E-value=0.23 Score=47.63 Aligned_cols=25 Identities=36% Similarity=0.546 Sum_probs=22.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|+|.|+.|.||||||+.++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4679999999999999999998765
No 279
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.48 E-value=0.017 Score=54.77 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.+.|.|+|++|+||||+|+.++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999999765
No 280
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.42 E-value=0.017 Score=54.12 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.0
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.+|+|+|+.|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988653
No 281
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.41 E-value=0.018 Score=54.20 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=21.6
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.|.|.|++|+||||+|+.++.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998754
No 282
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.37 E-value=0.023 Score=53.11 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|+.|+||||+|+.++.++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998754
No 283
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.36 E-value=0.038 Score=53.35 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=23.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|+.|.||||+|+.++..+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998765
No 284
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.35 E-value=0.025 Score=54.01 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|.|.|++|+||||+|+.+..++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998865
No 285
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.35 E-value=0.087 Score=56.19 Aligned_cols=108 Identities=12% Similarity=0.093 Sum_probs=61.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceE-EEecchhhhhccCHHHHHHHHHhh-HhcCcccccHHHHHHHHccce
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSY-FAQNVREAEETGGIKDLQKELLSD-VLNDRILRDVRSQLNRLARKM 244 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~-~~~~~~~~~~~~~~~~l~~~ll~~-~~~~~~~~~~~~l~~~L~~~~ 244 (808)
-.+++|+|..|.|||||++.+...+.......+ ++....+....... .+..+ ..+.+.......+...|...+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~-----~~v~Q~~~g~~~~~~~~~l~~~L~~~p 210 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK-----SIVNQREVGEDTKSFADALRAALREDP 210 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS-----SEEEEEEBTTTBSCSHHHHHHHTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc-----eEEEeeecCCCHHHHHHHHHHHhhhCc
Confidence 467999999999999999999886654333444 33311000000000 00000 000011133445666677777
Q ss_pred EEEEEecCCCHHHHHHHHhccCCCCCCCEEEEEeCchh
Q 041551 245 VLLVFDDVNNPRQIESLIGHLDHLASGSRVIITTRDKQ 282 (808)
Q Consensus 245 ~LlVlDdv~~~~~~~~l~~~l~~~~~gs~IiiTTR~~~ 282 (808)
-++++|.+.+.+.+....... ..|..|+.|+-..+
T Consensus 211 d~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 211 DVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp SEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred CEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 899999998887765544432 34666777776654
No 286
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.34 E-value=0.041 Score=64.29 Aligned_cols=127 Identities=19% Similarity=0.281 Sum_probs=64.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHH-ccceE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRL-ARKMV 245 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L-~~~~~ 245 (808)
.+-|.++|++|.|||.||++++++.... |+... . ..++....++. ...++.+.+.- +..+.
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~-----f~~v~--------~----~~l~s~~vGes-e~~vr~lF~~Ar~~~P~ 572 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQAN-----FISIK--------G----PELLTMWFGES-EANVREIFDKARQAAPC 572 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCE-----EEECC--------H----HHHHTTTCSSC-HHHHHHHHHHHHTTCSE
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCc-----eEEec--------c----chhhccccchH-HHHHHHHHHHHHHcCCc
Confidence 4457899999999999999999875432 22211 1 11222222221 12233333332 35689
Q ss_pred EEEEecCCCH----------------HHHHHHHhccCCCCCCC-EEEE-EeCchhhhh-hc----CCCeEEEecCCChhh
Q 041551 246 LLVFDDVNNP----------------RQIESLIGHLDHLASGS-RVII-TTRDKQVLK-NC----WAGQIYQMKELVYTD 302 (808)
Q Consensus 246 LlVlDdv~~~----------------~~~~~l~~~l~~~~~gs-~Iii-TTR~~~v~~-~~----~~~~~~~l~~L~~~e 302 (808)
.|++|+++.. ..+..|+..+....... .++| ||...+... .. ..+..+.++.-+.++
T Consensus 573 IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~ 652 (806)
T 3cf2_A 573 VLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652 (806)
T ss_dssp EEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CH
T ss_pred eeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHH
Confidence 9999998631 11445555444333222 2333 554443221 11 235677787767777
Q ss_pred HHHHHHHHh
Q 041551 303 AQKLFSQYA 311 (808)
Q Consensus 303 a~~Lf~~~~ 311 (808)
-.++|..+.
T Consensus 653 R~~il~~~l 661 (806)
T 3cf2_A 653 RVAILKANL 661 (806)
T ss_dssp HHHTTTTTS
T ss_pred HHHHHHHHh
Confidence 777776655
No 287
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.32 E-value=0.019 Score=55.50 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|+|.|+.|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998875
No 288
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.30 E-value=0.052 Score=48.24 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=32.4
Q ss_pred EeecCCCCcc--cccchhhcccccceeccCCCCCCCCCCC-CCCCCCCcEEecCCCC
Q 041551 514 SLKMPRSKVQ--QLWDDVQDLVNLKEIDLSRSESLTKLPD-LSRAKNLEILWLRGCL 567 (808)
Q Consensus 514 ~L~L~~n~l~--~l~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~l~~L~~L~L~~n~ 567 (808)
.++.++++++ .+|..+. .+|+.|+|++|.+....++ |..+++|+.|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4566666666 6665432 3577777777754433333 6677777777777763
No 289
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.30 E-value=0.04 Score=52.39 Aligned_cols=27 Identities=37% Similarity=0.677 Sum_probs=23.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
..+|+|.|++|+||||+|+.++.....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 467999999999999999999987654
No 290
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.28 E-value=0.086 Score=52.82 Aligned_cols=26 Identities=35% Similarity=0.661 Sum_probs=22.4
Q ss_pred cceeEEEEeecCCCcHhHHHHHHHHH
Q 041551 165 SHVISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 165 ~~~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
++..-|.++|++|.|||.+|.++++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 33456999999999999999999985
No 291
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.26 E-value=0.016 Score=55.13 Aligned_cols=28 Identities=32% Similarity=0.500 Sum_probs=23.1
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
|.|+|+|++|+|||||++++..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4588999999999999999887654444
No 292
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.26 E-value=0.025 Score=57.01 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.1
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
++|.|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998653
No 293
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.25 E-value=0.02 Score=60.20 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=24.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
-..++|+|.+|.|||||++.+++.+....
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 45689999999999999999998665443
No 294
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.23 E-value=0.024 Score=54.15 Aligned_cols=24 Identities=38% Similarity=0.387 Sum_probs=21.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
-.+++|+|+.|.|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 457999999999999999999864
No 295
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.22 E-value=0.18 Score=54.50 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=24.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
..+|.++|.+|+||||++..++..++.+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 6899999999999999999999866554
No 296
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.21 E-value=0.26 Score=51.15 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=28.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
-.++.|.|.+|+||||||.+++.....+-..++|++
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 568999999999999999999876544335677765
No 297
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.20 E-value=0.021 Score=54.20 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.9
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
++|+|.|++|+||||+|+.++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998653
No 298
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.13 E-value=0.026 Score=53.86 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=23.0
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
.+|.|.|++|+||||+|+.++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999987653
No 299
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.12 E-value=0.098 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|.|.|++|+||||+|+.+..+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998764
No 300
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.09 E-value=0.026 Score=54.52 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=21.7
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.|+|.|+.|+||||+|+.++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 301
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.95 E-value=0.025 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.0
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
++|+|.|++|+||||+|+.+..++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998653
No 302
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.93 E-value=0.051 Score=52.71 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=24.1
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
.+|+|.|++|+||||+|+.++.++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 5799999999999999999998765443
No 303
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.90 E-value=0.1 Score=53.58 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=28.2
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhccc--CceEEEec
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHF--EGSYFAQN 203 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~~ 203 (808)
++-|.|.+|+||||||.+++.....++ ..++|++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 689999999999999999988765543 45778763
No 304
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.88 E-value=0.023 Score=53.81 Aligned_cols=26 Identities=35% Similarity=0.578 Sum_probs=18.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|.|.|++|+||||+|+.++.++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999987654
No 305
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.87 E-value=0.031 Score=53.60 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|+|.|++|+||||+|+.++.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
No 306
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.85 E-value=0.03 Score=53.03 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=22.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
-++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35799999999999999999987653
No 307
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.82 E-value=0.11 Score=56.52 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=24.6
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEG 197 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~ 197 (808)
..++|+|.+|+||||||..+......++..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~ 181 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGG 181 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCc
Confidence 358899999999999999999876654443
No 308
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.81 E-value=0.048 Score=53.06 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=24.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
..+|+|.|+.|+||||+|+.++.++...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 35799999999999999999998775543
No 309
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.80 E-value=0.037 Score=51.97 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
-.+|+|+|+.|.||||+|+.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999998764
No 310
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.79 E-value=0.033 Score=53.47 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|++|+||||+|+.++.++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998653
No 311
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.76 E-value=0.058 Score=50.22 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=27.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc-cCceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH-FEGSYF 200 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~ 200 (808)
.++++|.|..|+|||||+..+...+..+ +...+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~i 38 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 38 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEE
Confidence 5689999999999999999999877654 443333
No 312
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.76 E-value=0.037 Score=52.87 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|+|.|++|+||||+|+.++.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998764
No 313
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.74 E-value=0.037 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.6
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..|+|.|++|+||||+|+.++.++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
No 314
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.72 E-value=0.077 Score=55.61 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=59.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
-..++|+|..|.|||||++.+...+.. -.+.+.+....+..... . +.... +...........+...|..++=+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~-~----~~~i~-~~~ggg~~~r~~la~aL~~~p~i 243 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKH-H----KNYTQ-LFFGGNITSADCLKSCLRMRPDR 243 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSS-C----SSEEE-EECBTTBCHHHHHHHHTTSCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccccc-c----hhEEE-EEeCCChhHHHHHHHHhhhCCCE
Confidence 347999999999999999998875433 24566665432211000 0 00000 00001123344555667778889
Q ss_pred EEEecCCCHHHHHHHHhccCCCCCCC-EEEEEeCchh
Q 041551 247 LVFDDVNNPRQIESLIGHLDHLASGS-RVIITTRDKQ 282 (808)
Q Consensus 247 lVlDdv~~~~~~~~l~~~l~~~~~gs-~IiiTTR~~~ 282 (808)
+++|.+.+.+.++.+. .+. .|. -+|+||....
T Consensus 244 lildE~~~~e~~~~l~-~~~---~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 244 IILGELRSSEAYDFYN-VLC---SGHKGTLTTLHAGS 276 (330)
T ss_dssp EEECCCCSTHHHHHHH-HHH---TTCCCEEEEEECSS
T ss_pred EEEcCCChHHHHHHHH-HHh---cCCCEEEEEEcccH
Confidence 9999998866555443 332 232 3677776543
No 315
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.66 E-value=0.15 Score=54.49 Aligned_cols=38 Identities=16% Similarity=0.230 Sum_probs=28.9
Q ss_pred cceeEEEEee-cCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 165 SHVISIWIWG-IGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 165 ~~~~vi~I~G-~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.+.++|+|+| -||+||||+|..++..++.+=..+..++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3478888885 9999999999999987665533455554
No 316
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.65 E-value=0.039 Score=51.40 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.4
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.|+|.|++|+||||+|+.+..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998653
No 317
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.55 E-value=0.36 Score=48.52 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.3
Q ss_pred eEEEEeecCCCcHhHHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
.+++|.|..|.|||||.+.++--
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998853
No 318
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.54 E-value=0.035 Score=52.87 Aligned_cols=28 Identities=32% Similarity=0.500 Sum_probs=23.7
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
++++|.|+.|+|||||++.+...+...|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 5789999999999999999998665444
No 319
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.54 E-value=0.042 Score=52.42 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.++|+|.|++|+||||+|+.++.++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998765
No 320
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.53 E-value=0.039 Score=52.46 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
...|+|+|+.|+||||+|+.++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999876
No 321
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.48 E-value=0.034 Score=53.86 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=22.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.++|+|+|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56799999999999999999988653
No 322
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.44 E-value=0.038 Score=53.77 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
-++|+|+|+.|+|||||++.+...+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987654
No 323
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.42 E-value=0.044 Score=52.88 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
...|+|.|++|+||||+|+.++.++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988653
No 324
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.41 E-value=0.29 Score=51.15 Aligned_cols=51 Identities=18% Similarity=0.047 Sum_probs=35.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSD 223 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 223 (808)
-.++.|.|.+|+||||||..++.....+=..++|++. .....++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl------Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL------EMSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES------SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC------CCCHHHHHHHHHHH
Confidence 4678999999999999999999866543344566552 33445555555544
No 325
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.38 E-value=0.045 Score=53.15 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
..+|+|.|+.|+||||+|+.+..++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999876543
No 326
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.36 E-value=0.044 Score=52.21 Aligned_cols=31 Identities=23% Similarity=0.361 Sum_probs=24.2
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.+++|.|+.|.|||||++.++.. ....+++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~ 33 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIE 33 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH----SSSEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHhcc----cCCeEEEc
Confidence 47899999999999999999752 33445554
No 327
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.35 E-value=0.062 Score=55.36 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=23.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.++++|+|.+|+||||++..++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998665
No 328
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.29 E-value=0.17 Score=52.96 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=28.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc------cCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH------FEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~------F~~~~~~~ 202 (808)
-.++.|+|.+|+||||||.+++...... -..++|++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 5689999999999999999998764322 23567776
No 329
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.27 E-value=0.043 Score=53.00 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=20.1
Q ss_pred eEEEEeecCCCcHhHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
.+|+|.|+.|+||||+|+.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 330
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.21 E-value=0.047 Score=53.70 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.6
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.+|+|+|+.|+||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 331
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.21 E-value=0.049 Score=52.90 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|..|.|||||++.+...+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 67899999999999999999988654
No 332
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.20 E-value=0.24 Score=52.19 Aligned_cols=37 Identities=14% Similarity=0.034 Sum_probs=28.6
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHhhc------ccCceEEEe
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKISR------HFEGSYFAQ 202 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~------~F~~~~~~~ 202 (808)
.-.++.|+|.+|+||||||.+++..... .-..++|++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3678999999999999999999886432 224567776
No 333
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.20 E-value=0.049 Score=51.99 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.9
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
+|+|.|+.|+||||+|+.+..++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 334
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.19 E-value=0.046 Score=52.77 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|+|.|+.|+||||+|+.++.++
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999998764
No 335
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.18 E-value=0.049 Score=55.03 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=22.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999998643
No 336
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.16 E-value=0.046 Score=52.34 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=22.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
-++|+|+|+.|+|||||++.+.....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 56799999999999999999987654
No 337
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.04 E-value=0.16 Score=53.38 Aligned_cols=29 Identities=28% Similarity=0.153 Sum_probs=23.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
-.-++|.|.+|+|||+|+..+++.+....
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~ 203 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 34589999999999999999999765433
No 338
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.02 E-value=0.038 Score=53.81 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.3
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
+|+|.|..|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 339
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.95 E-value=0.05 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.5
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.+++|.|+.|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999998753
No 340
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.92 E-value=0.051 Score=52.54 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3579999999999999999998755
No 341
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.90 E-value=0.05 Score=53.67 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
...|+|.|++|+||||+|+.++.++
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998764
No 342
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.87 E-value=0.054 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.0
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..|+|.|++|+||||+|+.++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988653
No 343
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.87 E-value=0.063 Score=52.35 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=23.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.++|.|.|++|+||||.|+.++.++
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999765
No 344
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.81 E-value=0.093 Score=54.47 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=27.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.|||+|.|-||+||||.|.-++.-++..=..+.-+.
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 789999999999999999988876655433344443
No 345
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.79 E-value=0.049 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=22.3
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.+|+|+|+.|.||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999998654
No 346
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.79 E-value=0.058 Score=52.26 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
..+|+|+|.+|.||||+|+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999988764
No 347
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.73 E-value=0.062 Score=51.41 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=22.5
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHH
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
...+|+|+|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999999875
No 348
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.72 E-value=0.058 Score=52.19 Aligned_cols=22 Identities=36% Similarity=0.314 Sum_probs=20.0
Q ss_pred eEEEEeecCCCcHhHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
.+|+|.|+.|.||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 349
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.72 E-value=0.051 Score=53.35 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.1
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..|.|.|++|+||||+|+.++.++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 350
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.70 E-value=0.11 Score=50.08 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=23.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|..|.||||+++.+...+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999988654
No 351
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.69 E-value=0.062 Score=53.74 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|+|.|+.|+|||||++.++.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999765
No 352
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.68 E-value=0.073 Score=51.67 Aligned_cols=26 Identities=35% Similarity=0.318 Sum_probs=22.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|..|.|||||++.+...+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999988654
No 353
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.68 E-value=0.065 Score=51.57 Aligned_cols=24 Identities=38% Similarity=0.263 Sum_probs=21.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
..+|+|.|+.|+||||+|+.+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 568999999999999999999874
No 354
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.64 E-value=0.065 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.5
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 355
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.63 E-value=0.16 Score=48.93 Aligned_cols=111 Identities=14% Similarity=0.045 Sum_probs=55.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHccceEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLARKMVL 246 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~~~~~L 246 (808)
-.+..++|.-|.||||.|...+++...+-..++.+.-... ...+...+...+...... ........+.+.+.++--+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~ge~~i~s~~g~~~~a-~~~~~~~~~~~~~~~~~dv 104 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRYSEEDVVSHNGLKVKA-VPVSASKDIFKHITEEMDV 104 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-------------------CCE-EECSSGGGGGGGCCSSCCE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--CcchHHHHHhhcCCeeEE-eecCCHHHHHHHHhcCCCE
Confidence 4678899999999999999998877655444444442211 112222233322111100 0001111222222333349
Q ss_pred EEEecCCC--HHHHHHHHhccCCCCCCCEEEEEeCchhh
Q 041551 247 LVFDDVNN--PRQIESLIGHLDHLASGSRVIITTRDKQV 283 (808)
Q Consensus 247 lVlDdv~~--~~~~~~l~~~l~~~~~gs~IiiTTR~~~v 283 (808)
|++|.+.- .++++.+.... ..|-.||+|-++.+.
T Consensus 105 ViIDEaQF~~~~~V~~l~~l~---~~~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 105 IAIDEVQFFDGDIVEVVQVLA---NRGYRVIVAGLDQDF 140 (214)
T ss_dssp EEECCGGGSCTTHHHHHHHHH---HTTCEEEEEECSBCT
T ss_pred EEEECcccCCHHHHHHHHHHh---hCCCEEEEEeccccc
Confidence 99998753 45564443321 237789999997653
No 356
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.63 E-value=0.36 Score=46.07 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=22.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|+|+|++|+||+|.|..+..++
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCChHHHHHHHHHHc
Confidence 6799999999999999999887654
No 357
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.61 E-value=0.048 Score=52.08 Aligned_cols=56 Identities=16% Similarity=0.058 Sum_probs=30.5
Q ss_pred ccEEEecccCCe-----ecCcccccCCcCcEEEeecCCC--cc-----cccccccCCCCCCEEEeecC
Q 041551 627 MWRLELTKVGIK-----ELPSSIECLSNLQYLYIWDCSE--LE-----SISSSIFKLNSLESIDISNC 682 (808)
Q Consensus 627 L~~L~L~~n~i~-----~lp~~~~~l~~L~~L~L~~n~~--l~-----~lp~~~~~l~~L~~L~l~~c 682 (808)
|+.|+|+.|.|. .+-..+..-+.|+.|+|++|.. ++ .+-..+..-+.|+.|+++.|
T Consensus 100 L~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 100 LRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 555555555554 2333455556688888865422 22 13333445567777777654
No 358
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.50 E-value=0.07 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.1
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
.|+|.|+.|+||||+|+.+...+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 359
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.48 E-value=0.43 Score=52.08 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=28.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
-.++.|.|.+|+||||+|.+++.....+=..++|++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 568999999999999999999987655433566665
No 360
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.47 E-value=0.26 Score=53.46 Aligned_cols=52 Identities=31% Similarity=0.379 Sum_probs=33.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcc-cCceEEEecchhhhhccCHHHHHHHHHh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQNVREAEETGGIKDLQKELLS 222 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~ 222 (808)
.-++|.|..|+|||+|+..+++.+... -+.++|+- +.+ ......++.+.+..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-iGE--R~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGE--RTREGNDLYHEMIE 206 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-ESC--CHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-CCC--cchHHHHHHHHhhh
Confidence 458999999999999999999876433 34455543 221 12334455555543
No 361
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.36 E-value=0.068 Score=53.68 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|+.|.||||+++.++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999997653
No 362
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.34 E-value=0.081 Score=51.43 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=23.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|+.|.||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46799999999999999999998664
No 363
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.33 E-value=0.11 Score=51.58 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=28.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
-.++.|.|.+|+||||||.+++......=..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 468999999999999999998876544434566765
No 364
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.33 E-value=0.077 Score=53.28 Aligned_cols=26 Identities=15% Similarity=0.223 Sum_probs=23.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|+.|+||||+|+.+...+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 56899999999999999999988654
No 365
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.32 E-value=0.07 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.2
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998754
No 366
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.29 E-value=0.27 Score=48.19 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
-++|.|++|+||||+|+.++.++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998765
No 367
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.28 E-value=0.061 Score=51.78 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=21.9
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
++++|+|+.|+|||||++.+...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5689999999999999999987553
No 368
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.19 E-value=0.088 Score=49.58 Aligned_cols=26 Identities=31% Similarity=0.593 Sum_probs=22.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
-.+|+|.|+.|.||||+++.+...+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999998653
No 369
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.17 E-value=0.3 Score=46.79 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=26.9
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.|+|=|.-|+||||.++.+++.+..+-..+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 3788999999999999999998776654555543
No 370
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.11 E-value=0.087 Score=54.01 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
..+|+|.|..|+||||||+.+...+..
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 678999999999999999999886543
No 371
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.11 E-value=0.082 Score=55.10 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=22.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
++|+|.|+.|+||||||+.++.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998653
No 372
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.07 E-value=0.18 Score=57.07 Aligned_cols=101 Identities=19% Similarity=0.171 Sum_probs=53.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEecchhhhhccCHHHHHHHHHhhHhcCcccccHHHHHHHHc-----
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQNVREAEETGGIKDLQKELLSDVLNDRILRDVRSQLNRLA----- 241 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~~~~~~~~~~~~l~~~L~----- 241 (808)
-+++.|.|.+|.||||++..+.......-..+....-... ....+.+.+ +. ....+..+.....
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~-----Aa~~L~e~~-----~~-~a~Tih~ll~~~~~~~~~ 272 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGK-----AARRLGEVT-----GR-TASTVHRLLGYGPQGFRH 272 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHH-----HHHHHHHHH-----TS-CEEEHHHHTTEETTEESC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHH-----HHHHhHhhh-----cc-cHHHHHHHHcCCcchhhh
Confidence 3578899999999999999998865544333443321111 111121111 11 1111222111000
Q ss_pred -----cceEEEEEecCC--CHHHHHHHHhccCCCCCCCEEEEEeCch
Q 041551 242 -----RKMVLLVFDDVN--NPRQIESLIGHLDHLASGSRVIITTRDK 281 (808)
Q Consensus 242 -----~~~~LlVlDdv~--~~~~~~~l~~~l~~~~~gs~IiiTTR~~ 281 (808)
.+.-+||+|.+. +...+..+...++ .+.++|+.-=..
T Consensus 273 ~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~~ 316 (574)
T 3e1s_A 273 NHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDTD 316 (574)
T ss_dssp SSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECTT
T ss_pred hhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEeccc
Confidence 123589999986 4456777766654 567777655433
No 373
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.06 E-value=0.076 Score=51.14 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=21.8
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..|+|.|+.|+||||+|+.+..++
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998865
No 374
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=92.04 E-value=0.29 Score=51.03 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=22.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
-.++.|+|.+|+||||||.+++..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999875
No 375
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.01 E-value=0.088 Score=50.85 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.7
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
+|+|.|..|+||||+|+.++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988653
No 376
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.01 E-value=0.074 Score=50.88 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=23.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
.+.+.|+|++|.||||+|..+++.+..
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999987654
No 377
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.98 E-value=0.084 Score=51.59 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.5
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..|.|.|++|+||||+|+.++.++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999876
No 378
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.96 E-value=0.087 Score=51.93 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=22.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|++|.||||+|+.++.++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999999987653
No 379
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.93 E-value=0.093 Score=52.32 Aligned_cols=25 Identities=20% Similarity=0.036 Sum_probs=22.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
...|+|.|++|+||||+|+.+..++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999998765
No 380
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.88 E-value=0.081 Score=54.75 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=21.9
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
++|.|+|+.|+||||||+.++.++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 579999999999999999999865
No 381
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.88 E-value=0.074 Score=53.45 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=23.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|.|.|++|.||||+|+.+..++.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987653
No 382
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.88 E-value=0.085 Score=52.20 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
...|.|.|+.|+||||+|+.++.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998753
No 383
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.86 E-value=0.15 Score=47.75 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
.++++|.|..|+|||||+..+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999986543
No 384
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.75 E-value=0.067 Score=55.60 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.++|.|+|+.|+||||||..++.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999764
No 385
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.73 E-value=0.33 Score=52.83 Aligned_cols=52 Identities=33% Similarity=0.377 Sum_probs=34.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhc-ccCceEEEecchhhhhccCHHHHHHHHHh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISR-HFEGSYFAQNVREAEETGGIKDLQKELLS 222 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~~~l~~~ll~ 222 (808)
.-++|.|-.|+|||+|+..+++.+.. +-+.++|+- +.+ ......++.+.+..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGE--R~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGE--RTREGNDLYMEMKE 218 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESC--CSHHHHHHHHHHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-ccc--CcHHHHHHHHhhhc
Confidence 35899999999999999999997643 345566653 222 12334555555543
No 386
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.73 E-value=0.33 Score=52.57 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|.|+|++|.||||+|++++.+.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999988654
No 387
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.72 E-value=0.1 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.7
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998865
No 388
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.64 E-value=0.16 Score=52.48 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=27.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEE
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFA 201 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 201 (808)
..+|+|+|.+|+||||++..++..+...-..+.++
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 67999999999999999999998765542233443
No 389
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.61 E-value=0.1 Score=51.28 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEEeecCCCcHhHHHHHHHHHh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998865
No 390
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.59 E-value=0.89 Score=49.83 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=28.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc-CceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF-EGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F-~~~~~~~ 202 (808)
-.++.|.|.+|+||||||..++....... ..++|++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 56899999999999999999998765432 3566665
No 391
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.53 E-value=0.1 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 392
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.50 E-value=0.16 Score=49.51 Aligned_cols=28 Identities=25% Similarity=0.449 Sum_probs=24.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
.++|+|+|.+|+|||||+..+.......
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 6789999999999999999998865444
No 393
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.48 E-value=0.096 Score=52.28 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|+|.|..|.|||||++.+...+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998754
No 394
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.45 E-value=0.39 Score=50.79 Aligned_cols=28 Identities=25% Similarity=0.359 Sum_probs=24.2
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
...+|+|+|.+|+|||||+..++.....
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3678999999999999999999876544
No 395
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.45 E-value=0.15 Score=50.83 Aligned_cols=36 Identities=28% Similarity=0.232 Sum_probs=26.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh-cccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS-RHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~-~~F~~~~~~~ 202 (808)
-.+++|.|..|+|||||++.++.... ..-..++++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 56899999999999999999885322 2234455554
No 396
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.43 E-value=0.097 Score=54.29 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=23.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|..|.|||||++.+...+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 67899999999999999999987554
No 397
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.42 E-value=0.094 Score=50.82 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
-.+++|+|..|.|||||++.+..-+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4579999999999999999998754
No 398
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.38 E-value=0.15 Score=53.91 Aligned_cols=37 Identities=24% Similarity=0.209 Sum_probs=30.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEec
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN 203 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 203 (808)
-+++.|.|.+|+||||||.+++......=..++|++.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 5689999999999999999999866544446777773
No 399
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.32 E-value=0.16 Score=53.65 Aligned_cols=37 Identities=24% Similarity=0.113 Sum_probs=29.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEec
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN 203 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 203 (808)
-+++.|+|.+|+||||||.+++......=..++|++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 5689999999999999999999765544345677763
No 400
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.30 E-value=0.085 Score=51.63 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=21.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
-.+++|+|+.|.|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999998754
No 401
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.27 E-value=0.17 Score=52.29 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=27.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
..+++|+|.+|+|||||++.++..+... ...+.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 5689999999999999999999866543 3344443
No 402
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.27 E-value=0.19 Score=50.72 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=26.5
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
++|+|.|-||+||||+|..++..++.+=..+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999999987665433344443
No 403
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.24 E-value=0.11 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
..+|+|.|+.|+||||+|+.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999983
No 404
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.17 E-value=0.18 Score=51.91 Aligned_cols=36 Identities=17% Similarity=0.056 Sum_probs=27.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccC-ceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFE-GSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~-~~~~~~ 202 (808)
-.+++|.|.+|+|||||++.++..+...-. .+.|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 568999999999999999999986654423 455654
No 405
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.17 E-value=0.17 Score=49.59 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=23.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
...|+|+|.+|+|||||+..+.......
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 6788999999999999999999864333
No 406
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.16 E-value=0.12 Score=47.61 Aligned_cols=25 Identities=32% Similarity=0.520 Sum_probs=22.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
-.+++|.|..|.|||||++.++.-.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4589999999999999999999865
No 407
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.10 E-value=0.79 Score=50.08 Aligned_cols=51 Identities=14% Similarity=-0.027 Sum_probs=35.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc-cCceEEEecchhhhhccCHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQNVREAEETGGIKDLQKELLSD 223 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 223 (808)
-.++.|.|.+|+||||+|..++...... =..++|++. ......+...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl------E~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL------EMPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES------SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC------CCCHHHHHHHHHHH
Confidence 5689999999999999999999876543 234666652 23444555555543
No 408
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.10 E-value=0.19 Score=52.31 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=27.7
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEE
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFA 201 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 201 (808)
+.++|+|+|.+|+||||++..++..+...=..+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 367999999999999999999998766542333443
No 409
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.09 E-value=0.27 Score=53.00 Aligned_cols=25 Identities=8% Similarity=0.206 Sum_probs=21.6
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
-++|.|-.|+|||+|+.++++....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh
Confidence 4789999999999999999987554
No 410
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.09 E-value=0.086 Score=49.32 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.8
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
++++|+|..|.|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999886544
No 411
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.08 E-value=0.2 Score=50.27 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..++.+.|.||+||||++..++....
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999999998665
No 412
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.01 E-value=0.19 Score=49.77 Aligned_cols=36 Identities=14% Similarity=0.025 Sum_probs=27.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc------ccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR------HFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~------~F~~~~~~~ 202 (808)
-.+++|+|.+|+||||||..++..... .-..++|+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 568999999999999999999975322 124567776
No 413
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.00 E-value=0.12 Score=53.06 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=22.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.++|+|.|+.|+||||||..++.++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3578999999999999999998754
No 414
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.96 E-value=0.19 Score=48.88 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.5
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
|.+.|.||+||||+|..++.....+
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC
Confidence 7789999999999999999876544
No 415
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.94 E-value=0.2 Score=51.89 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=27.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.++|+|+|-||+||||+|..++..+..+=..++.++
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 678888999999999999999987665423344443
No 416
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.93 E-value=0.19 Score=51.80 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=27.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
..+++|+|..|+||||+++.++..+... ...+.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~-~g~V~l~ 134 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 134 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc-CCeEEEE
Confidence 5689999999999999999999866543 3444443
No 417
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.85 E-value=0.15 Score=48.63 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=16.1
Q ss_pred CCCCcEEecCCCCCCcc----ccccccCCCCcCEEecCC
Q 041551 555 AKNLEILWLRGCLSLVE----THSTIQYLNKLEDLDLDY 589 (808)
Q Consensus 555 l~~L~~L~L~~n~~l~~----~p~~~~~l~~L~~L~l~~ 589 (808)
-+.|+.|+|++|..... +-..+..-+.|+.|+|++
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 34555555555532211 222333444566666654
No 418
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.84 E-value=0.18 Score=52.72 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=24.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhccc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHF 195 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F 195 (808)
...|.|+|++|.||||+++.++..+...|
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 55689999999999999999998765544
No 419
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.74 E-value=0.13 Score=49.06 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
+++|+|..|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 589999999999999999988553
No 420
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.74 E-value=0.25 Score=49.06 Aligned_cols=36 Identities=28% Similarity=0.224 Sum_probs=26.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh-hcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI-SRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~-~~~F~~~~~~~ 202 (808)
-.++.|.|.+|+||||+|.+++... ...-..++|++
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 5688999999999999999987643 33334556655
No 421
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.72 E-value=0.13 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEEEeecCCCcHhHHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
.+|.|.|++|+||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 422
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.63 E-value=0.14 Score=52.37 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.++|+|.|+.|+||||||..++.+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999999764
No 423
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.63 E-value=0.21 Score=50.80 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=22.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
-.+++|+|.+|+||||||..++..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999987554
No 424
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.37 E-value=0.25 Score=50.60 Aligned_cols=27 Identities=30% Similarity=0.513 Sum_probs=23.3
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
++|+|.|-||+||||+|..++..++.+
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~ 29 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEM 29 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 678889999999999999999876554
No 425
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.31 E-value=0.55 Score=51.59 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=25.5
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhhcccC-ceEEE
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKISRHFE-GSYFA 201 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~~~F~-~~~~~ 201 (808)
.+.|.|.+|.||||++..+...+...-. .++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEe
Confidence 6899999999999999999987654433 34443
No 426
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.28 E-value=0.25 Score=50.77 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=24.8
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
+.++++|+|.+|+||||++..++..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~ 125 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36789999999999999999999866544
No 427
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.18 E-value=0.16 Score=52.71 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=22.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|..|+||||||+.+.....
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999999887554
No 428
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.13 E-value=0.097 Score=51.69 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=16.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHH-HHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVF-NKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~-~~~ 191 (808)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999998 643
No 429
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=90.12 E-value=1.1 Score=48.50 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=32.1
Q ss_pred Hccce--EEEEEecCCC---HHHHHHHHhccCCCCCCCEEEEEeCchhhhhhcCCCeEEEe
Q 041551 240 LARKM--VLLVFDDVNN---PRQIESLIGHLDHLASGSRVIITTRDKQVLKNCWAGQIYQM 295 (808)
Q Consensus 240 L~~~~--~LlVlDdv~~---~~~~~~l~~~l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 295 (808)
+...+ -+||||++.. ....+.+...+.....|..||++|-+..++.. .+.++.+
T Consensus 310 l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~--~d~i~~l 368 (415)
T 4aby_A 310 TVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR--AHHHYKV 368 (415)
T ss_dssp HHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred HHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh--cCeEEEE
Confidence 33445 7899999864 33333333333222247789999988888653 3455544
No 430
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.10 E-value=0.24 Score=50.90 Aligned_cols=36 Identities=22% Similarity=0.133 Sum_probs=27.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
..+++++|.+|+||||++..++..+...=..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 578999999999999999999986655433344443
No 431
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.07 E-value=0.14 Score=54.37 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.+.|.++|++|+|||++|+.+++...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999998763
No 432
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=90.05 E-value=0.25 Score=53.63 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=25.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
.++|.++|.||+||||+|..++..++.+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999877654
No 433
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.03 E-value=0.13 Score=48.81 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
-+.|.|.|..|+||||||.+++.+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999875
No 434
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.00 E-value=0.25 Score=52.09 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=27.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
..+++|+|..|+||||+++.++..+... ...+.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~ 191 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMA 191 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEe
Confidence 5699999999999999999999866543 3344443
No 435
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.95 E-value=0.17 Score=52.41 Aligned_cols=26 Identities=31% Similarity=0.247 Sum_probs=23.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|..|.|||||++.+...+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999987654
No 436
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.93 E-value=0.19 Score=49.46 Aligned_cols=27 Identities=30% Similarity=0.456 Sum_probs=24.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
-..|+|.|+.|+||||+++.++..+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 467999999999999999999987764
No 437
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.86 E-value=0.11 Score=53.32 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=19.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
..+|+|.|..|+||||+|+.+...+.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999987654
No 438
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.85 E-value=0.26 Score=55.05 Aligned_cols=30 Identities=20% Similarity=0.113 Sum_probs=25.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccC
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFE 196 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~ 196 (808)
..+|.++|++|.||||+|++++..+...|-
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~ 64 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGV 64 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 568999999999999999999987655443
No 439
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.82 E-value=0.27 Score=51.27 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=24.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
..+++|+|..|+||||+++.++..+...
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6799999999999999999999865543
No 440
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.75 E-value=0.16 Score=55.25 Aligned_cols=36 Identities=28% Similarity=0.222 Sum_probs=27.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.++|+|+|.+|+||||+|..++.....+=..+.++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 568999999999999999999986654423344443
No 441
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=89.72 E-value=0.26 Score=53.28 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=27.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
.++|+++|.+|+||||++..++..++.+=..+..+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 689999999999999999999986655433333433
No 442
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.59 E-value=0.2 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
++|+|.|+.|+||||||..++.++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5799999999999999999998654
No 443
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.56 E-value=0.27 Score=52.04 Aligned_cols=37 Identities=24% Similarity=0.151 Sum_probs=29.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEec
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQN 203 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 203 (808)
-+++.|.|.+|+||||||.+++......-..++|++.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 5678899999999999999998866544446778763
No 444
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.50 E-value=0.16 Score=49.21 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=20.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
-.+++|+|..|.|||||++.++--
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999988763
No 445
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.49 E-value=0.28 Score=53.65 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=27.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
..+++|+|..|+|||||++.++..+... .+.+++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEe
Confidence 5699999999999999999999866543 3445543
No 446
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.46 E-value=0.21 Score=45.48 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.3
Q ss_pred eEEEEeecCCCcHhHHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998863
No 447
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=89.45 E-value=1.3 Score=49.16 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=36.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc-cCceEEEecchhhhhccCHHHHHHHHHhhH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH-FEGSYFAQNVREAEETGGIKDLQKELLSDV 224 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~~~~~~~~~~~~~~l~~~ll~~~ 224 (808)
-.++.|.|.+|+||||||.+++.....+ =..++|++. .....++...++...
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~------E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML------EESVEETAEDLIGLH 294 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES------SSCHHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec------cCCHHHHHHHHHHHH
Confidence 5688999999999999999999876654 235667652 233445555554443
No 448
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.39 E-value=0.2 Score=47.61 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=21.2
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999873
No 449
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.25 E-value=0.22 Score=47.87 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=22.9
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.+|+|.|+.|.||||+|+.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999999764
No 450
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.24 E-value=0.33 Score=46.58 Aligned_cols=35 Identities=26% Similarity=0.151 Sum_probs=26.1
Q ss_pred eEEEEe-ecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 168 ISIWIW-GIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 168 ~vi~I~-G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
++|+|+ +-||+||||+|..++..+..+=..+..++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 567777 78999999999999987665433455554
No 451
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.23 E-value=0.33 Score=52.98 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=44.7
Q ss_pred eEEEEeecCCCcHhHHHH-HHHHHhhcccCce-EEEecchhhhhccCHHHHHHHHHhhHh-c-------Cccc-------
Q 041551 168 ISIWIWGIGGIGKTTIAD-AVFNKISRHFEGS-YFAQNVREAEETGGIKDLQKELLSDVL-N-------DRIL------- 230 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~-~~~~~~~~~F~~~-~~~~~~~~~~~~~~~~~l~~~ll~~~~-~-------~~~~------- 230 (808)
.-++|.|..|+|||+||. .++++.. -+.. +++- +.+ ......++.+.+...-. . ..+.
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~~--~dv~~V~~~-IGe--R~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQKG--QGVYCIYVA-IGQ--KKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTTT--TTEEEEEEE-ESC--CHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhhc--CCcEEEEEE-cCC--CcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 358899999999999965 6666542 3433 3332 221 12234455555543210 0 0000
Q ss_pred --ccHHHHHHHH--ccceEEEEEecCCCH
Q 041551 231 --RDVRSQLNRL--ARKMVLLVFDDVNNP 255 (808)
Q Consensus 231 --~~~~~l~~~L--~~~~~LlVlDdv~~~ 255 (808)
...-.+-+++ .++.+|+++||+...
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~DslTr~ 279 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDLSKH 279 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccHHHH
Confidence 0111223334 478999999998653
No 452
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.19 E-value=0.5 Score=45.81 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=24.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
-..|+|-|+.|+||||+++.+...+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3579999999999999999999877654
No 453
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.11 E-value=0.22 Score=49.40 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=22.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
...|+|.|..|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998764
No 454
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.09 E-value=0.17 Score=49.62 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=20.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-.+++|+|..|.|||||.+.++-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998875
No 455
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.08 E-value=0.2 Score=49.77 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=20.4
Q ss_pred eEEEEeecCCCcHhHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
.+++|+|..|.|||||.+.++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999886
No 456
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.05 E-value=0.35 Score=46.68 Aligned_cols=29 Identities=28% Similarity=0.530 Sum_probs=24.8
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhhcccC
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKISRHFE 196 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~~~F~ 196 (808)
+.|+|-|..|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999998865554
No 457
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=88.98 E-value=0.22 Score=49.32 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
..+|+|.|+.|.||||+++.++.++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998765
No 458
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.95 E-value=0.36 Score=52.57 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=44.6
Q ss_pred eEEEEeecCCCcHhHHHH-HHHHHhhcccCce-EEEecchhhhhccCHHHHHHHHHhhHhcC--------ccc-------
Q 041551 168 ISIWIWGIGGIGKTTIAD-AVFNKISRHFEGS-YFAQNVREAEETGGIKDLQKELLSDVLND--------RIL------- 230 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~-~~~~~~~~~F~~~-~~~~~~~~~~~~~~~~~l~~~ll~~~~~~--------~~~------- 230 (808)
.-++|.|..|+|||+||. .++++.. -+.. +|+- +.+ ......++.+.+...-.-. .+.
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~-iGe--R~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQKG--QDVICIYVA-IGQ--KQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGGS--CSEEEEEEE-ESC--CHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhhc--CCcEEEEEE-CCC--cchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 357899999999999965 6666542 3433 3332 221 1223445555554321100 000
Q ss_pred --ccHHHHHHHH--ccceEEEEEecCCCH
Q 041551 231 --RDVRSQLNRL--ARKMVLLVFDDVNNP 255 (808)
Q Consensus 231 --~~~~~l~~~L--~~~~~LlVlDdv~~~ 255 (808)
...-.+-+++ .++.+|+++||+...
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsltr~ 266 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDLSKQ 266 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHHH
Confidence 0011223334 478999999998653
No 459
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.91 E-value=0.27 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
...|+|+|.+|+|||||...+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999999986
No 460
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.91 E-value=0.18 Score=49.99 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-.+++|+|..|.|||||.+.++-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35799999999999999998875
No 461
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.74 E-value=0.24 Score=45.68 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.8
Q ss_pred eEEEEeecCCCcHhHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999999875
No 462
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=88.71 E-value=0.32 Score=46.00 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=21.0
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
...|+|+|.+|+|||||...+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999998863
No 463
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=88.58 E-value=0.71 Score=42.49 Aligned_cols=90 Identities=19% Similarity=0.141 Sum_probs=62.7
Q ss_pred cccEEecC--------------ccccCCCChHHHHHHHHHhCCcceEeeC-CcC----C----CCcchHHHHHHHHhhcc
Q 041551 24 KYDVFLSF--------------RGEDTRDNFTSHLYSALWHNNIETFIDN-DLK----R----GDEISQSLLDTIEASAI 80 (808)
Q Consensus 24 ~~dvflSy--------------~~~D~~~~f~~~l~~~l~~~g~~~~~d~-~l~----~----g~~~~~~i~~ai~~s~~ 80 (808)
+--+|++| +.+| -.+...|...-....+-.|.|. +.. . -+.|.+++.+.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 44577888 3444 3455556555555555667775 431 2 34688999999999999
Q ss_pred eeEEecccccchhhhHHHHHHHHHhhhcCCCeEEEEEe
Q 041551 81 SIIIFSERYASSGWCLDELSKIFECKHDYGQIVIPVFC 118 (808)
Q Consensus 81 ~v~v~S~~y~~s~~c~~el~~~~~~~~~~~~~v~Pv~~ 118 (808)
.|+++|++...|.|-..|+..++. +.+.+|+-|..
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~ 117 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYP 117 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEET
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEEC
Confidence 999999999999999999987652 22445665543
No 464
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.45 E-value=0.33 Score=52.99 Aligned_cols=89 Identities=11% Similarity=0.196 Sum_probs=46.6
Q ss_pred eEEEEeecCCCcHhHHHH-HHHHHhhcccCce-EEEecchhhhhccCHHHHHHHHHhhHh-c----------Cccc----
Q 041551 168 ISIWIWGIGGIGKTTIAD-AVFNKISRHFEGS-YFAQNVREAEETGGIKDLQKELLSDVL-N----------DRIL---- 230 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~-~~~~~~~~~F~~~-~~~~~~~~~~~~~~~~~l~~~ll~~~~-~----------~~~~---- 230 (808)
.-++|.|..|+|||+||. .++++.. -+.. +|+- +.+ ......++.+.+...-. . +...
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~~--~dv~~V~~~-iGe--R~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQG--QNVICVYVA-IGQ--KASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCCT--TTCEEEEEE-ESC--CHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhhc--CCcEEEEEE-cCC--CchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 357899999999999965 6666543 3433 3332 221 11234445554443210 0 0000
Q ss_pred --ccHHHHHHHH--ccceEEEEEecCCCHH-HHHHH
Q 041551 231 --RDVRSQLNRL--ARKMVLLVFDDVNNPR-QIESL 261 (808)
Q Consensus 231 --~~~~~l~~~L--~~~~~LlVlDdv~~~~-~~~~l 261 (808)
...-.+-+++ .++.+|+++||+.... .++++
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REi 274 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQM 274 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHH
Confidence 1111122333 5899999999986543 24443
No 465
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.42 E-value=0.23 Score=47.52 Aligned_cols=24 Identities=17% Similarity=0.412 Sum_probs=20.8
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 345899999999999999999873
No 466
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=88.37 E-value=0.25 Score=45.10 Aligned_cols=22 Identities=23% Similarity=0.584 Sum_probs=19.5
Q ss_pred EEEEeecCCCcHhHHHHHHHHH
Q 041551 169 SIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
-|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999863
No 467
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.37 E-value=0.2 Score=49.64 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
-.+++|+|..|.|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998863
No 468
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=88.30 E-value=0.24 Score=52.69 Aligned_cols=25 Identities=28% Similarity=0.141 Sum_probs=22.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.++++|+|++|.|||||++.++...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5689999999999999999999754
No 469
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=88.30 E-value=0.24 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=20.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-.+++|+|..|.|||||.+.++-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999999886
No 470
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.24 E-value=0.23 Score=48.39 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.2
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
.+|+|.|+.|+||||+|+.+..++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999998764
No 471
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.21 E-value=0.41 Score=50.42 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.9
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
-.++.|+|..|+|||||+..++...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999999865
No 472
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.19 E-value=0.37 Score=53.13 Aligned_cols=30 Identities=20% Similarity=0.083 Sum_probs=25.1
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccC
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFE 196 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~ 196 (808)
..+|.++|++|.||||+|++++......|-
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~ 68 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGV 68 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 457899999999999999999987655443
No 473
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.19 E-value=0.21 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=20.0
Q ss_pred eEEEEeecCCCcHhHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
.+++|+|..|.|||||++.++-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999998875
No 474
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.16 E-value=1 Score=47.29 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISR 193 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~ 193 (808)
..+|+|+|.+|+|||||+..+......
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 678999999999999999999875543
No 475
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.12 E-value=0.52 Score=51.07 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.3
Q ss_pred eEEEEeecCCCcHhHHHHHHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
.-++|.|-+|+|||+|+..+++...
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~ 177 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQAS 177 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3478999999999999999998654
No 476
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.11 E-value=0.2 Score=47.25 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.9
Q ss_pred EEEEeecCCCcHhHHHHHHHH
Q 041551 169 SIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998875
No 477
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=88.08 E-value=1.9 Score=43.71 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=19.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
...|+|+|.+|+|||||...+..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CceEEEEecCCCchHHHHHHHhc
Confidence 44688999999999999988774
No 478
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.05 E-value=0.21 Score=50.29 Aligned_cols=23 Identities=30% Similarity=0.227 Sum_probs=20.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-.+++|+|..|.|||||.+.++-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999998875
No 479
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=88.03 E-value=0.42 Score=52.80 Aligned_cols=37 Identities=22% Similarity=0.135 Sum_probs=26.8
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
+.++|+|+|.+|+||||++..++..++.+=..+..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3679999999999999999999986655422334443
No 480
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=88.00 E-value=0.25 Score=53.51 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=23.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
.+-|.++|++|+||||+|+.++......
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4558899999999999999999876443
No 481
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.96 E-value=0.25 Score=49.87 Aligned_cols=23 Identities=26% Similarity=0.253 Sum_probs=20.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-.+++|+|..|.|||||.+.++-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999999886
No 482
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.93 E-value=0.2 Score=48.78 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=20.0
Q ss_pred eEEEEeecCCCcHhHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
.+++|+|..|.|||||.+.++-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999875
No 483
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.91 E-value=0.22 Score=49.43 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.2
Q ss_pred eEEEEeecCCCcHhHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
.+++|+|..|.|||||.+.++-
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999885
No 484
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.91 E-value=0.22 Score=50.29 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-.+++|+|..|.|||||++.++-
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 34799999999999999998885
No 485
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=87.80 E-value=0.51 Score=51.56 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=19.8
Q ss_pred eEEEEeecCCCcHhHHHH-HHHHHhh
Q 041551 168 ISIWIWGIGGIGKTTIAD-AVFNKIS 192 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~-~~~~~~~ 192 (808)
.-++|.|..|+|||+||. .++++..
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHh
Confidence 347899999999999954 6777554
No 486
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.79 E-value=0.53 Score=60.15 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=29.4
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
-+.|.|+|++|+|||+||.+++.....+=..+.|+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 568999999999999999999987655545567766
No 487
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.78 E-value=0.28 Score=45.05 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEEeecCCCcHhHHHHHHHH
Q 041551 169 SIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-|+|+|.+|+|||||...+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999987
No 488
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.78 E-value=0.28 Score=50.38 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=22.3
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHh
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKI 191 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~ 191 (808)
-.+++|+|..|.|||||++.+..-+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4679999999999999999998765
No 489
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.76 E-value=0.24 Score=49.24 Aligned_cols=23 Identities=30% Similarity=0.169 Sum_probs=20.7
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-.+++|+|..|.|||||.+.++-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999886
No 490
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=87.75 E-value=0.48 Score=51.09 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=25.0
Q ss_pred ceeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 166 HVISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 166 ~~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
+.++|+|+|.+|+||||++..++..+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36789999999999999999999876654
No 491
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.73 E-value=0.4 Score=47.61 Aligned_cols=33 Identities=27% Similarity=0.573 Sum_probs=25.0
Q ss_pred EEEeecCCCcHhHHHHHHHHHhhcccCceEEEe
Q 041551 170 IWIWGIGGIGKTTIADAVFNKISRHFEGSYFAQ 202 (808)
Q Consensus 170 i~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 202 (808)
|+|.|-||+||||+|..++..+..+=..+..++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566899999999999999987765533344443
No 492
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.71 E-value=0.23 Score=48.87 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=34.0
Q ss_pred HHHHccceEEEEEecCC---CHHHHHHHHhc-cCCCCCCCEEEEEeCchhhhhhcCCCeEEEe
Q 041551 237 LNRLARKMVLLVFDDVN---NPRQIESLIGH-LDHLASGSRVIITTRDKQVLKNCWAGQIYQM 295 (808)
Q Consensus 237 ~~~L~~~~~LlVlDdv~---~~~~~~~l~~~-l~~~~~gs~IiiTTR~~~v~~~~~~~~~~~l 295 (808)
-..|..++-+++||+.- |+..-+.+... +.....|..||++|.+.+.+.. .+.++.+
T Consensus 142 Aral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~--~d~v~~l 202 (229)
T 2pze_A 142 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK--ADKILIL 202 (229)
T ss_dssp HHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHH--CSEEEEE
T ss_pred HHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHh--CCEEEEE
Confidence 34456677789999864 34444455443 2222346778889988776543 3444444
No 493
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.69 E-value=0.23 Score=49.99 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=20.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-.+++|+|..|.|||||.+.++-
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35799999999999999999885
No 494
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.67 E-value=0.23 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-.+++|+|..|.|||||.+.++-
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34799999999999999999875
No 495
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=87.66 E-value=0.28 Score=46.33 Aligned_cols=23 Identities=22% Similarity=0.549 Sum_probs=20.1
Q ss_pred eEEEEeecCCCcHhHHHHHHHHH
Q 041551 168 ISIWIWGIGGIGKTTIADAVFNK 190 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~~~~~~ 190 (808)
-.|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999863
No 496
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.58 E-value=0.24 Score=49.43 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-.+++|+|..|.|||||.+.++-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999876
No 497
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.49 E-value=0.57 Score=50.48 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=20.8
Q ss_pred EEEEeecCCCcHhHHHHHHHHHhh
Q 041551 169 SIWIWGIGGIGKTTIADAVFNKIS 192 (808)
Q Consensus 169 vi~I~G~gGiGKTtLA~~~~~~~~ 192 (808)
-++|.|-.|+|||+|+.++++...
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCB
T ss_pred EEEEecCCCCCchHHHHHHHHHHH
Confidence 478999999999999999988643
No 498
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.40 E-value=0.25 Score=49.58 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=20.6
Q ss_pred eeEEEEeecCCCcHhHHHHHHHH
Q 041551 167 VISIWIWGIGGIGKTTIADAVFN 189 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~ 189 (808)
-.+++|.|..|.|||||.+.++-
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999886
No 499
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.36 E-value=0.55 Score=46.02 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=21.5
Q ss_pred eeEEEEeecCCCcHhHHHHHHHHHhhcc
Q 041551 167 VISIWIWGIGGIGKTTIADAVFNKISRH 194 (808)
Q Consensus 167 ~~vi~I~G~gGiGKTtLA~~~~~~~~~~ 194 (808)
-..|+|-|+.|+||||+++.++..+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4579999999999999999999977654
No 500
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=87.33 E-value=0.78 Score=49.90 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=18.5
Q ss_pred eEEEEeecCCCcHhHHHH-HHHHH
Q 041551 168 ISIWIWGIGGIGKTTIAD-AVFNK 190 (808)
Q Consensus 168 ~vi~I~G~gGiGKTtLA~-~~~~~ 190 (808)
.-++|.|-.|+|||+||. .+.++
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT
T ss_pred CEEEeecCCCCCcchHHHHHHHhh
Confidence 347899999999999974 56664
Done!