BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041553
(315 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255583237|ref|XP_002532383.1| RNA binding protein, putative [Ricinus communis]
gi|223527907|gb|EEF29995.1| RNA binding protein, putative [Ricinus communis]
Length = 342
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/303 (62%), Positives = 233/303 (76%), Gaps = 13/303 (4%)
Query: 13 MQYTYTAWVPTTYPPLPKIVTVKSKPSSAKTQTPIRYSAHEYINYNDNININDDADDGRK 72
MQ TY +WVPT P + SKP R S N +I++ A+ +
Sbjct: 1 MQSTYASWVPTVSPS--PLNLTNSKP---------RLSNTSPNQTQRNGDIDNSAE--VR 47
Query: 73 FALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTV 132
F LP H+K+ITSTSNPF+KHC+KLRQSS YRH+HGSALVVGTTPIREI F +SL+E TV
Sbjct: 48 FPLPTHIKSITSTSNPFIKHCVKLRQSSPYRHAHGSALVVGTTPIREICKFQKSLKEETV 107
Query: 133 RMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID 192
M+CL+L DK +VPEGLD+ ST T+RVS++VMK+LS +QS+ESIEAIALMK PTS F +
Sbjct: 108 EMECLILPDKAKVPEGLDSSSTRTLRVSALVMKRLSQLQSTESIEAIALMKFPTSYFVVG 167
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
+QK+AD R WFPS HRILVL+GIQDPGNLGTL+R+A+AF+WGG+FLLPGCCDPF++KAL
Sbjct: 168 DHQKDADFRKWFPSPHRILVLEGIQDPGNLGTLVRSAVAFRWGGIFLLPGCCDPFNDKAL 227
Query: 253 RASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVP 312
+ASRGA FQ+PIVSGSW+HLE LKDEFQMK+LAGH ++E V +LSQ ADS A +P
Sbjct: 228 KASRGASFQVPIVSGSWHHLEALKDEFQMKMLAGHPASDDEQTPVSELSQGFADSLADIP 287
Query: 313 LCL 315
+CL
Sbjct: 288 ICL 290
>gi|359495860|ref|XP_002266337.2| PREDICTED: uncharacterized tRNA/rRNA methyltransferase YsgA-like
[Vitis vinifera]
Length = 459
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/241 (75%), Positives = 204/241 (84%)
Query: 75 LPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRM 134
LP HVK+ITS SNPFVKHC KLR SSSYR+SHGSALVVGTTPIREIY F +S QERTV M
Sbjct: 168 LPSHVKSITSPSNPFVKHCFKLRHSSSYRYSHGSALVVGTTPIREIYKFQQSTQERTVEM 227
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
DCLL+LDK E+PEGLD+ S VRVSS+VMKKLSG+QS+ES+EAIALM+IPTS FS++ +
Sbjct: 228 DCLLILDKAEIPEGLDDFSVRLVRVSSMVMKKLSGLQSTESVEAIALMRIPTSFFSVNDD 287
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
E DCR WF S HRILVLD IQDPGNLGTLLR+AMAF+WGGVFLL GCCDPF+ KALRA
Sbjct: 288 TYEKDCRRWFQSPHRILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRA 347
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLC 314
SRGA FQLPIVSGSW HLE LK+EFQMK++AGH N++ + V LSQ LADS A VPLC
Sbjct: 348 SRGASFQLPIVSGSWIHLETLKNEFQMKMIAGHPDSNQKRKPVSPLSQGLADSLADVPLC 407
Query: 315 L 315
L
Sbjct: 408 L 408
>gi|296090517|emb|CBI40848.3| unnamed protein product [Vitis vinifera]
Length = 1306
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 181/241 (75%), Positives = 204/241 (84%)
Query: 75 LPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRM 134
LP HVK+ITS SNPFVKHC KLR SSSYR+SHGSALVVGTTPIREIY F +S QERTV M
Sbjct: 1006 LPSHVKSITSPSNPFVKHCFKLRHSSSYRYSHGSALVVGTTPIREIYKFQQSTQERTVEM 1065
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
DCLL+LDK E+PEGLD+ S VRVSS+VMKKLSG+QS+ES+EAIALM+IPTS FS++ +
Sbjct: 1066 DCLLILDKAEIPEGLDDFSVRLVRVSSMVMKKLSGLQSTESVEAIALMRIPTSFFSVNDD 1125
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
E DCR WF S HRILVLD IQDPGNLGTLLR+AMAF+WGGVFLL GCCDPF+ KALRA
Sbjct: 1126 TYEKDCRRWFQSPHRILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGCCDPFNGKALRA 1185
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLC 314
SRGA FQLPIVSGSW HLE LK+EFQMK++AGH N++ + V LSQ LADS A VPLC
Sbjct: 1186 SRGASFQLPIVSGSWIHLETLKNEFQMKMIAGHPDSNQKRKPVSPLSQGLADSLADVPLC 1245
Query: 315 L 315
L
Sbjct: 1246 L 1246
>gi|30691669|ref|NP_195515.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
thaliana]
gi|26450142|dbj|BAC42190.1| unknown protein [Arabidopsis thaliana]
gi|90093284|gb|ABD85155.1| At4g38020 [Arabidopsis thaliana]
gi|332661464|gb|AEE86864.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis
thaliana]
Length = 352
Score = 333 bits (853), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 168/289 (58%), Positives = 213/289 (73%), Gaps = 6/289 (2%)
Query: 30 KIVTVKSKPSSAKTQTPIRYSAHEYINYNDNINI-NDDADDGRKFALPYHVKNITSTSNP 88
+I T SK ++ Q P IN +D+++I D + +LP HV +ITST+NP
Sbjct: 19 EIKTYASKLRASSAQLP---RTQIQINPSDDLSIYGSDKSPANRVSLPSHVNSITSTTNP 75
Query: 89 FVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEG 148
FVKHCLKLRQSSSYRH+HGS LVVGT PIRE+ F + Q T ++CLLL ++ ++P+G
Sbjct: 76 FVKHCLKLRQSSSYRHAHGSVLVVGTIPIREVCMFQTNKQGMTTEIECLLLHEEAKIPQG 135
Query: 149 LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI-DVNQKEADCRSWFPSI 207
L+++S VRVSS+VMKKLSGVQS+ES+EAIALM+IP+S + D DC WFPS
Sbjct: 136 LESLSIRIVRVSSLVMKKLSGVQSTESVEAIALMRIPSSFTDLKDDKDIITDCNKWFPSA 195
Query: 208 HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
HR+LVLD IQDPGNLGTL+R+AMAF W G FLLPGCCDP+++KALRASRGA FQLPIVSG
Sbjct: 196 HRVLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLPIVSG 255
Query: 268 SWYHLEVLKDEFQMKLLAGH-AGGNEEPRQVLQLSQELADSFAGVPLCL 315
+W HL++L++EFQMKLLAGH A ++ + V +LS E A S A PLCL
Sbjct: 256 NWNHLKLLENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEKPLCL 304
>gi|449478075|ref|XP_004155215.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase slr1673-like
[Cucumis sativus]
Length = 328
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 172/257 (66%), Positives = 202/257 (78%), Gaps = 1/257 (0%)
Query: 59 DNININDDADDGRKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIR 118
+INI + D + LP HVK ITS SNPFVKHC+KLR SSSYRH HGS +VVG TPIR
Sbjct: 24 SSINIAEAIDFTGRIPLPSHVKAITSISNPFVKHCVKLRFSSSYRHFHGSVVVVGATPIR 83
Query: 119 EIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEA 178
EI F SL T ++CLLLLD+VEVPEGL N++ VRVSS VMKKLSG+QS+ESI+A
Sbjct: 84 EICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVRIVRVSSAVMKKLSGLQSTESIDA 143
Query: 179 IALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVF 238
IALM+IP S S+D N+KE D + WFPS HRILVL+GIQDPGNLGTL+R+A+AFKW G+F
Sbjct: 144 IALMRIPPSFCSVDGNEKEVDFKRWFPSPHRILVLEGIQDPGNLGTLIRSALAFKWNGIF 203
Query: 239 LLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVL 298
LLPGCCDPF+EKALRASRGA FQLPIVSG+W HLEV K EF+MK+LAGH N EP+ V
Sbjct: 204 LLPGCCDPFNEKALRASRGASFQLPIVSGTWNHLEVFKKEFEMKMLAGHPESN-EPKPVS 262
Query: 299 QLSQELADSFAGVPLCL 315
LSQ+ ++S PLCL
Sbjct: 263 VLSQQFSNSLKDFPLCL 279
>gi|297802134|ref|XP_002868951.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314787|gb|EFH45210.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 355
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 173/298 (58%), Positives = 215/298 (72%), Gaps = 8/298 (2%)
Query: 23 TTYPPLP-KIVTVKSKPSSAKTQTPIRYSAHEYINYNDNININD-DADDGRKFALPYHVK 80
+ P LP +I SK S+ Q P IN +D++ +N D + +LP HV
Sbjct: 11 SVSPRLPFEIKASVSKLRSSSAQLP---RTQIQINPSDDLLVNSSDKSPATRVSLPSHVN 67
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
+ITST+NPFVKHCLKLRQSSSYRH+HGS LVVG PIRE+ F + Q T ++CLLL
Sbjct: 68 SITSTTNPFVKHCLKLRQSSSYRHAHGSVLVVGAIPIREVCMFQMNKQGITSEIECLLLH 127
Query: 141 DKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI-DVNQKEAD 199
++ ++P+GL+++S VRVSS+VMKKLSGVQS+ES+EAIALM+IP+S + D D
Sbjct: 128 EEAQIPQGLESLSIRIVRVSSLVMKKLSGVQSTESVEAIALMRIPSSFIDLKDDKDIITD 187
Query: 200 CRSWFP-SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
C WFP S HR+LVLD IQDPGNLGTL+R+AMAF W G FLLPGCCDPF++KALRASRGA
Sbjct: 188 CNKWFPSSAHRVLVLDSIQDPGNLGTLIRSAMAFHWDGAFLLPGCCDPFNDKALRASRGA 247
Query: 259 CFQLPIVSGSWYHLEVLKDEFQMKLLAGH-AGGNEEPRQVLQLSQELADSFAGVPLCL 315
FQLPIVSG+W HL+VL+ EFQMKLLAGH A ++P+ V +LS E A S A PLCL
Sbjct: 248 SFQLPIVSGNWNHLKVLEHEFQMKLLAGHPATSTQKPKLVSKLSVEFAQSVAEKPLCL 305
>gi|357517191|ref|XP_003628884.1| RNA methyltransferase-like protein [Medicago truncatula]
gi|355522906|gb|AET03360.1| RNA methyltransferase-like protein [Medicago truncatula]
Length = 638
Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 165/253 (65%), Positives = 190/253 (75%), Gaps = 10/253 (3%)
Query: 63 INDDADDGRKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYN 122
I+ D D+ K ITS+SNPFVKHCLKLR +SSYR SHGS LVVGTTPIREIY
Sbjct: 39 ISHDVDEKSKL--------ITSSSNPFVKHCLKLRNNSSYRRSHGSVLVVGTTPIREIYR 90
Query: 123 FNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALM 182
F S Q + V MDCL+L DK E+P GLD + V VSS VM+K+SG+QS++SI+AIALM
Sbjct: 91 FQESSQNKNVTMDCLILPDKAEIPNGLDESADSIVHVSSTVMRKISGLQSTDSIDAIALM 150
Query: 183 KIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPG 242
KIP S ++D +QK +C+ WFPS HRILVLDGIQDPGNLGTLLR+A+AF+W GVFLLPG
Sbjct: 151 KIPASFSNLDDDQK--NCQKWFPSAHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPG 208
Query: 243 CCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQ 302
CCDPF+EKALRASRGA FQLPIVSGSW HLE LK+E QMKLLAGH + V LSQ
Sbjct: 209 CCDPFNEKALRASRGASFQLPIVSGSWNHLESLKEESQMKLLAGHPQHEGLIKPVFSLSQ 268
Query: 303 ELADSFAGVPLCL 315
DS PLCL
Sbjct: 269 SFCDSILDTPLCL 281
>gi|359807242|ref|NP_001241366.1| uncharacterized protein LOC100792782 [Glycine max]
gi|255635868|gb|ACU18281.1| unknown [Glycine max]
Length = 324
Score = 316 bits (810), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 160/236 (67%), Positives = 187/236 (79%), Gaps = 2/236 (0%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K ITS SNPFVKHCLKLR SSSYR SH SA+VVG TPIREI F S+Q+ +V MDCL+L
Sbjct: 42 KPITSVSNPFVKHCLKLRNSSSYRRSHASAIVVGATPIREICRFRESIQDGSVLMDCLIL 101
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
DK ++P+GLD + VRVSSVVM+KLSG+Q++ES++AIALMKIP S FS+D +QK +
Sbjct: 102 PDKADIPDGLDKSTASVVRVSSVVMRKLSGLQTTESLDAIALMKIPASFFSVDDHQK--N 159
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
C WFPS+HRILVLDGIQDPGNLGTLLR+A+AF+W GVFLLPGCCDPF+EKALRASRGA
Sbjct: 160 CLKWFPSVHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEKALRASRGAS 219
Query: 260 FQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLCL 315
FQLP+VSGSW HLE LK EFQM+ LAGH + V LS DS + PLCL
Sbjct: 220 FQLPVVSGSWNHLESLKKEFQMRFLAGHPEHEGLVKPVSSLSPSFCDSLSDTPLCL 275
>gi|224084459|ref|XP_002307305.1| predicted protein [Populus trichocarpa]
gi|222856754|gb|EEE94301.1| predicted protein [Populus trichocarpa]
Length = 359
Score = 310 bits (793), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 177/262 (67%), Positives = 205/262 (78%), Gaps = 18/262 (6%)
Query: 69 DGRKFALPY------------HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTP 116
D +FALP HVK+ITSTSNPFVKHCLKL+Q+SSYRHSH SALVVG+TP
Sbjct: 49 DNSRFALPIPRIIIKTAAAGGHVKSITSTSNPFVKHCLKLQQNSSYRHSHASALVVGSTP 108
Query: 117 IR-EIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDN-ISTHTVRVSSVVMKKLSGVQSSE 174
IR EI+ SL+ERTV ++ LLLLD+ EV + LD+ S VRVSSVVMKKLS +QS+E
Sbjct: 109 IRWEIHRSQESLKERTVELEYLLLLDEAEVSQVLDDKSSARVVRVSSVVMKKLSQLQSTE 168
Query: 175 SIEAIALMKIPTSVFSIDVNQKEADC-RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFK 233
S++AIALMK PT+ F +D +Q DC R WFPS HRILVL+GIQDPGNLGTLLR+A+A
Sbjct: 169 SVDAIALMKFPTTYFVVDNHQ---DCSRKWFPSPHRILVLEGIQDPGNLGTLLRSALALG 225
Query: 234 WGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEE 293
WGGVFLLPGCCDPF+ K LRASRGA FQ+PIVSGSWYHLE LKDE+QMK+LAGH N++
Sbjct: 226 WGGVFLLPGCCDPFNSKVLRASRGASFQIPIVSGSWYHLEALKDEYQMKMLAGHPDCNDK 285
Query: 294 PRQVLQLSQELADSFAGVPLCL 315
R V QLSQ LAD FA VPLCL
Sbjct: 286 SRPVSQLSQGLADCFARVPLCL 307
>gi|4467108|emb|CAB37542.1| hypothetical protein [Arabidopsis thaliana]
gi|7270785|emb|CAB80467.1| hypothetical protein [Arabidopsis thaliana]
Length = 400
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 168/337 (49%), Positives = 213/337 (63%), Gaps = 54/337 (16%)
Query: 30 KIVTVKSKPSSAKTQTPIRYSAHEYINYNDNINI-NDDADDGRKFALPYHVKNITSTSNP 88
+I T SK ++ Q P IN +D+++I D + +LP HV +ITST+NP
Sbjct: 19 EIKTYASKLRASSAQLP---RTQIQINPSDDLSIYGSDKSPANRVSLPSHVNSITSTTNP 75
Query: 89 FVKHCLKLRQSSSYRHSHGSALVVGTTPIR------------------------------ 118
FVKHCLKLRQSSSYRH+HGS LVVGT PIR
Sbjct: 76 FVKHCLKLRQSSSYRHAHGSVLVVGTIPIRYVSVILYSLFFFIATERIVESSFLFYCVRL 135
Query: 119 ------------------EIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVS 160
E+ F + Q T ++CLLL ++ ++P+GL+++S VRVS
Sbjct: 136 ISCEIEFQGDNFKGVVHREVCMFQTNKQGMTTEIECLLLHEEAKIPQGLESLSIRIVRVS 195
Query: 161 SVVMKKLSGVQSSESIEAIALMKIPTSVFSI-DVNQKEADCRSWFPSIHRILVLDGIQDP 219
S+VMKKLSGVQS+ES+EAIALM+IP+S + D DC WFPS HR+LVLD IQDP
Sbjct: 196 SLVMKKLSGVQSTESVEAIALMRIPSSFTDLKDDKDIITDCNKWFPSAHRVLVLDSIQDP 255
Query: 220 GNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEF 279
GNLGTL+R+AMAF W G FLLPGCCDP+++KALRASRGA FQLPIVSG+W HL++L++EF
Sbjct: 256 GNLGTLVRSAMAFNWDGAFLLPGCCDPYNDKALRASRGASFQLPIVSGNWNHLKLLENEF 315
Query: 280 QMKLLAGH-AGGNEEPRQVLQLSQELADSFAGVPLCL 315
QMKLLAGH A ++ + V +LS E A S A PLCL
Sbjct: 316 QMKLLAGHPATTTQKLKPVSKLSVEFAQSLAEKPLCL 352
>gi|359497652|ref|XP_003635600.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase
slr1673-like, partial [Vitis vinifera]
Length = 206
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 130/169 (76%), Positives = 145/169 (85%)
Query: 75 LPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRM 134
LP HVK+ITS SNPFVKHC KLR SSSYR+SHGSALVVGTTPIREIY F +S QERTV M
Sbjct: 38 LPSHVKSITSPSNPFVKHCFKLRHSSSYRYSHGSALVVGTTPIREIYKFQQSTQERTVEM 97
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
DCLL+LDK E+PEGLD S VRVSS+VMKKLSG+QS+ES+EAIALM+IPTS FS++ +
Sbjct: 98 DCLLILDKAEIPEGLDVFSVRLVRVSSMVMKKLSGLQSTESVEAIALMRIPTSFFSVNDD 157
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGC 243
E DCR WF S HRILVLD IQDPGNLGTLLR+AMAF+WGGVFLL GC
Sbjct: 158 TYEKDCRRWFQSPHRILVLDRIQDPGNLGTLLRSAMAFRWGGVFLLSGC 206
>gi|357118934|ref|XP_003561202.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase YsgA-like
[Brachypodium distachyon]
Length = 344
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 125/237 (52%), Positives = 154/237 (64%), Gaps = 7/237 (2%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K + S +NP VKHC+KLR S++YR S G L+VG PI E++ + +DCLLL
Sbjct: 57 KQVASVANPLVKHCVKLRDSAAYRRSCGRLLLVGLVPILEVW------RSGFAAIDCLLL 110
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
LD + VPE L + V VS+ VMKK+SG+QS +S EAIA+M +P ++ + A
Sbjct: 111 LDGLAVPEELHELCGDVVYVSATVMKKISGMQSVDSTEAIAVMHMPKYFCDLNGDDGGAA 170
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
S RILVLDGIQDPGNLGTL+R+A AFKW GVFLLP CCDPF+EKALRA+RGA
Sbjct: 171 LDGLLHSPRRILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPSCCDPFNEKALRAARGAS 230
Query: 260 FQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQ-LSQELADSFAGVPLCL 315
QLPIVSG+WY L E MK+LAGH N + Q LS+ELADS LCL
Sbjct: 231 LQLPIVSGNWYDLRAFMTERGMKMLAGHPESNSDGSDGTQTLSKELADSLMNESLCL 287
>gi|212723624|ref|NP_001132172.1| uncharacterized protein LOC100193597 [Zea mays]
gi|194693648|gb|ACF80908.1| unknown [Zea mays]
gi|414872167|tpg|DAA50724.1| TPA: spoU rRNA Methylase family protein [Zea mays]
Length = 365
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/237 (50%), Positives = 155/237 (65%), Gaps = 7/237 (2%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K +TS +NP VKHC+KLR S++YR S L+VG PI E+ +F +D LLL
Sbjct: 79 KQVTSVANPLVKHCVKLRLSAAYRRSCRRLLLVGLAPILEVCSFELE------AIDYLLL 132
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
LD VE PE L S + VS+ VMKK+SG+QS +S EA+A+M +P + +Q
Sbjct: 133 LDGVEAPEALREFSGDILYVSAAVMKKVSGMQSVDSTEAVAVMHMPNHFRDLGSHQDGDA 192
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
F RILVLDGIQDPGNLGTL+R+A AFKW GVFLLP CCDPF+EKA+RA+RGA
Sbjct: 193 LDGLFSYPKRILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGAS 252
Query: 260 FQLPIVSGSWYHLEVLKDEFQMKLLAGH-AGGNEEPRQVLQLSQELADSFAGVPLCL 315
QLPIVSG+W+ L L +++MK++AGH ++ ++ LS ELADS LCL
Sbjct: 253 LQLPIVSGTWHDLHALVTKYRMKMMAGHPESSSDASKETYSLSNELADSLLNESLCL 309
>gi|195646036|gb|ACG42486.1| spoU rRNA Methylase family protein [Zea mays]
Length = 345
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/237 (50%), Positives = 155/237 (65%), Gaps = 7/237 (2%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K +TS +NP VKHC+KLR S++YR S L+VG PI E+ +F +D LLL
Sbjct: 59 KQVTSVANPLVKHCVKLRLSAAYRRSCRRLLLVGLAPILEVCSFELE------AIDYLLL 112
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
LD VE PE L S + VS+ VMKK+SG+QS +S EA+A+M +P + +Q
Sbjct: 113 LDGVEAPEALREFSGDILYVSAAVMKKVSGMQSVDSTEAVAVMHMPNLFRDLGSHQDGDA 172
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
F RILVLDGIQDPGNLGTL+R+A AFKW GVFLLP CCDPF+EKA+RA+RGA
Sbjct: 173 LDGLFSYPKRILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGAS 232
Query: 260 FQLPIVSGSWYHLEVLKDEFQMKLLAGH-AGGNEEPRQVLQLSQELADSFAGVPLCL 315
QLPIVSG+W+ L L +++MK++AGH ++ ++ LS ELADS LCL
Sbjct: 233 LQLPIVSGTWHDLHALVTKYRMKMMAGHPESSSDASKETYSLSNELADSLLNESLCL 289
>gi|13174243|gb|AAK14417.1|AC087851_9 putative RNA methyltransferases [Oryza sativa Japonica Group]
gi|222625582|gb|EEE59714.1| hypothetical protein OsJ_12143 [Oryza sativa Japonica Group]
Length = 329
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 123/238 (51%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K + S +NP VKHC++LR SS+YR S L+VG PI E+ +F S ++ LLL
Sbjct: 45 KQVASVANPLVKHCVRLRLSSAYRRSCRRILLVGLIPILEMCSFEFS------TIETLLL 98
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
LD +E+PE L S + V VS+ VMKK+SG+QS +S EAIA++ +P +D +Q A
Sbjct: 99 LDGIELPEELYGFSGNVVYVSAAVMKKVSGMQSVDSTEAIAIIHMPKYFRDLDSDQGGAV 158
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
W S RILVLDGIQDPGNLGTL+R+A AF+W GVFLLP CCDPF+EKALRA+RGA
Sbjct: 159 LDEWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGAS 218
Query: 260 FQLPIVSGSWYHLEVLKDEFQMKLLAGH--AGGNEEPRQVLQLSQELADSFAGVPLCL 315
QLP+VSG+W L L + MK+LAGH + N R + LS+ELADS +CL
Sbjct: 219 LQLPVVSGNWSDLHALMAKSDMKMLAGHPESSSNGSERTHV-LSKELADSLMSESVCL 275
>gi|115454647|ref|NP_001050924.1| Os03g0685100 [Oryza sativa Japonica Group]
gi|108710455|gb|ABF98250.1| RNA methyltransferase, TrmH family protein, expressed [Oryza sativa
Japonica Group]
gi|113549395|dbj|BAF12838.1| Os03g0685100 [Oryza sativa Japonica Group]
gi|215765471|dbj|BAG87168.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 340
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 123/238 (51%), Positives = 158/238 (66%), Gaps = 9/238 (3%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K + S +NP VKHC++LR SS+YR S L+VG PI E+ +F S ++ LLL
Sbjct: 56 KQVASVANPLVKHCVRLRLSSAYRRSCRRILLVGLIPILEMCSFEFS------TIETLLL 109
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
LD +E+PE L S + V VS+ VMKK+SG+QS +S EAIA++ +P +D +Q A
Sbjct: 110 LDGIELPEELYGFSGNVVYVSAAVMKKVSGMQSVDSTEAIAIIHMPKYFRDLDSDQGGAV 169
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
W S RILVLDGIQDPGNLGTL+R+A AF+W GVFLLP CCDPF+EKALRA+RGA
Sbjct: 170 LDEWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGAS 229
Query: 260 FQLPIVSGSWYHLEVLKDEFQMKLLAGH--AGGNEEPRQVLQLSQELADSFAGVPLCL 315
QLP+VSG+W L L + MK+LAGH + N R + LS+ELADS +CL
Sbjct: 230 LQLPVVSGNWSDLHALMAKSDMKMLAGHPESSSNGSERTHV-LSKELADSLMSESVCL 286
>gi|242038529|ref|XP_002466659.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor]
gi|241920513|gb|EER93657.1| hypothetical protein SORBIDRAFT_01g011760 [Sorghum bicolor]
Length = 345
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/237 (50%), Positives = 153/237 (64%), Gaps = 7/237 (2%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K + S +NP VKHC+KLR S++YR S L+VG PI E+ F +D LLL
Sbjct: 59 KQVASVANPLVKHCVKLRLSAAYRRSCRRLLLVGLAPILEVCRFELD------AIDYLLL 112
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+D VEVPE L S V VS+ VMKK+SG+QS +S EAIA+M +P + ++
Sbjct: 113 MDGVEVPEALREFSGDVVHVSAAVMKKVSGMQSVDSTEAIAVMHMPNHFRDLGSHEDGDA 172
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
RILVLDGIQDPGNLGTL+R+A AFKW GVFLLP CCDPF+EKA+RA+RGA
Sbjct: 173 LDGLLSYPKRILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGAS 232
Query: 260 FQLPIVSGSWYHLEVLKDEFQMKLLAGH-AGGNEEPRQVLQLSQELADSFAGVPLCL 315
QLPIVSG+W+ L L ++ MK++AGH ++ + + LS+ELADS LCL
Sbjct: 233 LQLPIVSGTWHDLHALMTKYGMKMMAGHPESSSDASKGIYSLSKELADSLLNESLCL 289
>gi|218193529|gb|EEC75956.1| hypothetical protein OsI_13060 [Oryza sativa Indica Group]
Length = 329
Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/238 (51%), Positives = 157/238 (65%), Gaps = 9/238 (3%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K + S +NP VKHC++LR SS YR S L+VG PI E+ +F S ++ LLL
Sbjct: 45 KQVASVANPLVKHCVRLRLSSVYRRSCRRILLVGLIPILEMCSFEFS------TIETLLL 98
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
LD +E+PE L S + V VS+ VMKK+SG+QS +S EAIA++ +P +D +Q A
Sbjct: 99 LDGIELPEELYGFSGNVVYVSAAVMKKVSGMQSVDSTEAIAIIHMPKYFRDLDSDQGGAV 158
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
W S RILVLDGIQDPGNLGTL+R+A AF+W GVFLLP CCDPF+EKALRA+RGA
Sbjct: 159 LDEWLGSAKRILVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGAS 218
Query: 260 FQLPIVSGSWYHLEVLKDEFQMKLLAGH--AGGNEEPRQVLQLSQELADSFAGVPLCL 315
QLP+VSG+W L L + MK+LAGH + N R + LS+ELADS +CL
Sbjct: 219 LQLPVVSGNWSDLHALMAKPDMKMLAGHPESSSNGSERTHV-LSKELADSLMSESVCL 275
>gi|326525807|dbj|BAJ88950.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 333
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/238 (50%), Positives = 155/238 (65%), Gaps = 8/238 (3%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K + S +NP VK C++LR S++YR S ++VG PI EI +V +DCLLL
Sbjct: 52 KQVASVANPLVKRCVRLRDSAAYRRSCRRLVLVGLAPILEICRLG------SVAIDCLLL 105
Query: 140 LDKVEVPEGLDNISTHTV-RVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
LD EVP+ L +S +V VS+ VMKK+SG+QS +S EAIA+M +P + ++ A
Sbjct: 106 LDGAEVPDELRELSGGSVVHVSATVMKKISGMQSVDSTEAIAVMHMPRHFCDLGDDEGGA 165
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ F S RILVLDGIQDPGNLGTL+R+A AFKW GVFLLP CCDPF+EKALRA+RGA
Sbjct: 166 GLDASFQSPKRILVLDGIQDPGNLGTLIRSACAFKWDGVFLLPACCDPFNEKALRAARGA 225
Query: 259 CFQLPIVSGSWYHLEVLKDEFQMKLLAGH-AGGNEEPRQVLQLSQELADSFAGVPLCL 315
QLPIVSG+W L L + MK+ AGH ++ + LS+ELADS LCL
Sbjct: 226 SLQLPIVSGNWCDLHALVTRYGMKMFAGHPESSSDGSARTHALSKELADSLVSESLCL 283
>gi|302756691|ref|XP_002961769.1| hypothetical protein SELMODRAFT_77463 [Selaginella moellendorffii]
gi|300170428|gb|EFJ37029.1| hypothetical protein SELMODRAFT_77463 [Selaginella moellendorffii]
Length = 321
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 155/236 (65%), Gaps = 5/236 (2%)
Query: 56 NYNDNININDDADDGRKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTT 115
N N + A+ LP HV++++S SNP+VKH +K+R+SSSYR + S LVVG+
Sbjct: 5 NSNGKASATPSAERKSVVELPRHVQHVSSLSNPYVKHLVKMRESSSYREATESVLVVGSN 64
Query: 116 PIREIYNFNRSLQ-ERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSE 174
++E+ F + E ++ LL++++ + P+ L S TV +++ VM+KL+G++SSE
Sbjct: 65 LLQELCEFAVTNNTEAAFELEMLLVVEERDFPQELSTFSQRTVFLTASVMQKLAGLKSSE 124
Query: 175 SIEAIALMKIPTSVFSIDVNQKEADC----RSWFPSIHRILVLDGIQDPGNLGTLLRTAM 230
S++AI ++K+P+S + ++ A W P+ HR+L+LDGIQDPGNLGTLLRTA
Sbjct: 125 SVDAIGVVKLPSSFQKLSPDESLASAGATLEKWCPNPHRLLILDGIQDPGNLGTLLRTAT 184
Query: 231 AFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAG 286
AF W GVFLLPGCCDPF++K LRASR A F++PI +G+W ++ MK AG
Sbjct: 185 AFAWDGVFLLPGCCDPFNDKTLRASRAANFRMPIAAGTWPQIQAFGKANAMKFYAG 240
>gi|302762835|ref|XP_002964839.1| hypothetical protein SELMODRAFT_167231 [Selaginella moellendorffii]
gi|300167072|gb|EFJ33677.1| hypothetical protein SELMODRAFT_167231 [Selaginella moellendorffii]
Length = 321
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 155/236 (65%), Gaps = 5/236 (2%)
Query: 56 NYNDNININDDADDGRKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTT 115
N N + A+ LP HV++++S SNP+VKH +K+R+SSSYR + S LVVG+
Sbjct: 5 NSNGKASAAPSAERKSVVELPRHVQHVSSLSNPYVKHLVKMRESSSYREATESVLVVGSN 64
Query: 116 PIREIYNFNRSLQ-ERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSE 174
++E+ F + E ++ LL++++ + P+ L S TV +++ VM+KL+G++SSE
Sbjct: 65 LLQELCEFAVTNNTEAPFELEMLLVVEERDFPQELSTFSQRTVFLTASVMQKLAGLKSSE 124
Query: 175 SIEAIALMKIPTSVFSIDVNQKEADC----RSWFPSIHRILVLDGIQDPGNLGTLLRTAM 230
S++AI ++K+P+S + ++ A W P+ HR+L+LDGIQDPGNLGTLLRTA
Sbjct: 125 SVDAIGVVKLPSSFQKLSPDESLASAGATLEKWCPNPHRLLILDGIQDPGNLGTLLRTAT 184
Query: 231 AFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAG 286
AF W GVFLLPGCCDPF++K LRASR A F++PI +G+W ++ MK AG
Sbjct: 185 AFAWDGVFLLPGCCDPFNDKTLRASRAANFRMPIAAGTWPQIQAFGKANAMKFYAG 240
>gi|449432970|ref|XP_004134271.1| PREDICTED: L-type lectin-domain containing receptor kinase
IX.1-like [Cucumis sativus]
Length = 762
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 105/199 (52%), Positives = 126/199 (63%), Gaps = 38/199 (19%)
Query: 117 IREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESI 176
+ EI F SL T ++CLLLLD+VEVPEGL N++ VRVSS VMKKLSG+QS+ESI
Sbjct: 553 LLEICKFQESLHGVTCTLECLLLLDEVEVPEGLVNLTVRIVRVSSAVMKKLSGLQSTESI 612
Query: 177 EAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGG 236
+AIALM+IP S S+D N+KE G
Sbjct: 613 DAIALMRIPPSFCSVDGNEKE-------------------------------------NG 635
Query: 237 VFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQ 296
+FLLPGCCDPF+EKALRASRGA FQLPIVSG+W HLEV K EF+MK+LAGH N EP+
Sbjct: 636 IFLLPGCCDPFNEKALRASRGASFQLPIVSGTWNHLEVFKKEFEMKMLAGHPESN-EPKP 694
Query: 297 VLQLSQELADSFAGVPLCL 315
V LSQ+ ++S PLCL
Sbjct: 695 VSVLSQQFSNSLKDFPLCL 713
>gi|194695936|gb|ACF82052.1| unknown [Zea mays]
gi|414872166|tpg|DAA50723.1| TPA: hypothetical protein ZEAMMB73_261299 [Zea mays]
Length = 209
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 164 MKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLG 223
MKK+SG+QS +S EA+A+M +P + +Q F RILVLDGIQDPGNLG
Sbjct: 1 MKKVSGMQSVDSTEAVAVMHMPNHFRDLGSHQDGDALDGLFSYPKRILVLDGIQDPGNLG 60
Query: 224 TLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKL 283
TL+R+A AFKW GVFLLP CCDPF+EKA+RA+RGA QLPIVSG+W+ L L +++MK+
Sbjct: 61 TLIRSACAFKWDGVFLLPACCDPFNEKAIRAARGASLQLPIVSGTWHDLHALVTKYRMKM 120
Query: 284 LAGH-AGGNEEPRQVLQLSQELADSFAGVPLCL 315
+AGH ++ ++ LS ELADS LCL
Sbjct: 121 MAGHPESSSDASKETYSLSNELADSLLNESLCL 153
>gi|255075481|ref|XP_002501415.1| predicted protein [Micromonas sp. RCC299]
gi|226516679|gb|ACO62673.1| predicted protein [Micromonas sp. RCC299]
Length = 338
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 116/203 (57%), Gaps = 14/203 (6%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
+ ITST N VKH KL ++ YR GS +V G+ + E+ + R+ L L
Sbjct: 75 ERITSTDNATVKHFAKLVRNRGYREECGSIVVAGSGILSEVCGGGGGDAVGSARV--LFL 132
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
D VP G+ ++ VR V+KK +G+QS + ++A+A + +P V V E
Sbjct: 133 ADDACVPAGV--TASRIVRAPEHVLKKAAGLQSVDRVDAVAELSMPPVV---GVAALEGA 187
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
R I R+L LDGIQDPGNLGTL+RTA+A W V LLPG CDP+++KALRA+RG
Sbjct: 188 GR-----ITRLLALDGIQDPGNLGTLVRTALALGWDAVALLPGTCDPYNDKALRAARGGV 242
Query: 260 FQLPIVSGSWYHLEVL--KDEFQ 280
F++P+ +W LE + +D Q
Sbjct: 243 FRMPMARLTWEELEEVTRRDGLQ 265
>gi|46445775|ref|YP_007140.1| hypothetical protein pc0141 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399416|emb|CAF22865.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 249
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 121/211 (57%), Gaps = 32/211 (15%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL-- 139
ITS +PFVKH +KLR++S YR H + ++ G+ PIRE+ +F + + + L
Sbjct: 6 ITSLQHPFVKHLVKLRENSRYRLEHKALILEGSKPIREVLSFVKKIIYTSAYAPYLTFEG 65
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+K +V EG +MKK+SG + E + IA +++P FS + K+A
Sbjct: 66 FEKWQVTEG--------------IMKKISGNSTPEGV--IAEIQMPP--FS---SLKQA- 103
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
ILVLDGI DPGNLGTL+RTA+AF W G++LLP CDP++EK LR++RGA
Sbjct: 104 --------QNILVLDGINDPGNLGTLMRTALAFGWNGIYLLPTSCDPYNEKVLRSARGAH 155
Query: 260 FQLPIVSGSWYHLEVLKDEFQMKLLAGHAGG 290
F++P+ G+ LE+L + + L G
Sbjct: 156 FKIPLRRGNINELELLAKQGNFQTLVADLKG 186
>gi|307107286|gb|EFN55529.1| hypothetical protein CHLNCDRAFT_133965 [Chlorella variabilis]
Length = 542
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 110/193 (56%), Gaps = 23/193 (11%)
Query: 84 STSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKV 143
+SN VKHC+KLR+SS YR G+ALV G + E+ + L+ L++
Sbjct: 241 GSSNDAVKHCVKLRESSKYRREVGAALVSGADLVVELAPY-------CAPYRALVGLEEA 293
Query: 144 EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSW 203
++P+G+ + V ++ VM+K++G+ S + A +P + AD
Sbjct: 294 QLPDGI--AAERYVTATAPVMQKIAGLGSVGAGALAAEAALPPT----------ADLLGG 341
Query: 204 FPS-IHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
P + R+L LDG+QDPGNLGTLLRTA+A W LLPGCCDP+++KALRASRGA F+L
Sbjct: 342 APGQLRRVLALDGVQDPGNLGTLLRTALALGWQAAVLLPGCCDPYNDKALRASRGAVFKL 401
Query: 263 PIVS---GSWYHL 272
P+ G W L
Sbjct: 402 PLAQYSLGQWQQL 414
>gi|145349369|ref|XP_001419108.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579339|gb|ABO97401.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 306
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 127/228 (55%), Gaps = 14/228 (6%)
Query: 69 DGRKF--ALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS 126
DGR+ A V+ ++S N VKH +KL +S +YR G+ ++ + +RE F R+
Sbjct: 25 DGRRAHAADADGVERVSSAENATVKHFVKLCKSKAYRDERGTVVLSSSVLMREC--FGRA 82
Query: 127 LQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPT 186
+ R + L + D E P G+ + +R + V+KK +GV +++ ++A+ P
Sbjct: 83 GEGREAKT--LFVADWAEAPAGIR--AKRVIRAPASVLKKCAGVNNADGLDAVGEFASP- 137
Query: 187 SVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDP 246
+ +N +E + + R+L ++G+QDPGNLGTL RTA+AF W V LLPG CDP
Sbjct: 138 ----VIMNAREFVDGAKQRDVVRVLAVEGVQDPGNLGTLTRTAVAFGWDTVALLPGTCDP 193
Query: 247 FSEKALRASRGACFQLPIVS-GSWYHLEVLKDEFQMKLLAGHAGGNEE 293
F++KA+RA+RGA F++ V+ S+ L E M+L A E+
Sbjct: 194 FNDKAMRAARGATFRVDFVAFDSFDDLASAGRELNMELYAAEPSAKED 241
>gi|337292656|emb|CCB90663.1| uncharacterized tRNA/rRNA methyltransferase YsgA [Waddlia
chondrophila 2032/99]
Length = 243
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 114/214 (53%), Gaps = 28/214 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ++S +P +K LR+ R GS ++ G +RE R+L + +
Sbjct: 1 MRTLSSLQHPLIKRLTALRKERKMRQQEGSVVIEGKKLVRENVRLVRTLLTTSPSTE--- 57
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+PE S VS +++K+SGV+S E + +A +K+P+ F +
Sbjct: 58 ----FSLPE-----SAEVYAVSPEMIQKISGVKSPEGV--LAEVKMPS--FKLPAR---- 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ R+LVL+ + DPGNLGTL+RT++AF W GVFLL CCDPF++KA+RAS+GA
Sbjct: 101 --------LQRLLVLENLNDPGNLGTLIRTSLAFGWDGVFLLGNCCDPFNDKAIRASKGA 152
Query: 259 CFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNE 292
F+LPIV G L+ L + QM + G +
Sbjct: 153 IFKLPIVVGDLESLKTLLIDHQMSVFIADLEGKK 186
>gi|282890318|ref|ZP_06298846.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499700|gb|EFB41991.1| hypothetical protein pah_c016o017 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 254
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 113/196 (57%), Gaps = 26/196 (13%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
++++++S NP VKH +K+RQ+S YR H S ++ G+T I E+ +T + L
Sbjct: 7 NIRSLSSLQNPLVKHLVKIRQNSDYRQEHQSVVLEGSTVIAEV--------AKTHPIKRL 58
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
L +D +P + + ++V ++ K+SG+Q S + +A +K+P+
Sbjct: 59 LTVDLCLIPSEIS--AEEILQVDQAILDKISGMQHSPGV--LAEVKMPSP---------- 104
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
S +I +LVL+ I DPGNLGTL+R+A+AF W G+F++ CD F+EKA+R++RG
Sbjct: 105 ----SPLKNIRSLLVLNQINDPGNLGTLIRSALAFGWEGIFIVNQSCDIFNEKAIRSARG 160
Query: 258 ACFQLPIVSGSWYHLE 273
A F+LP G LE
Sbjct: 161 ATFRLPYRKGDLQELE 176
>gi|297622073|ref|YP_003710210.1| rRNA methylase, SpoU family [Waddlia chondrophila WSU 86-1044]
gi|297377374|gb|ADI39204.1| putative rRNA methylase, SpoU family [Waddlia chondrophila WSU
86-1044]
Length = 243
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 114/214 (53%), Gaps = 28/214 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ++S +P +K LR+ R GS ++ G +RE R+L + +
Sbjct: 1 MRTLSSLQHPLIKRLTALRKERKMRQQEGSVVIEGKKLVRENVRLVRTLLTTSPSTE--- 57
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+PE S VS +++K+SGV+S E + +A +K+P+ F +
Sbjct: 58 ----FSLPE-----SAEVYAVSPEMIQKISGVKSPEGV--LAEVKMPS--FKLPAR---- 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ R+LVL+ + DPGNLGTL+RT++AF W GVFLL CCDPF++KA+RAS+GA
Sbjct: 101 --------LQRLLVLENLNDPGNLGTLIRTSLAFGWDGVFLLGNCCDPFNDKAIRASKGA 152
Query: 259 CFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNE 292
F+LPIV G L+ L + QM + G +
Sbjct: 153 IFKLPIVVGDLESLKTLLIDHQMSVFIADLEGKK 186
>gi|338176729|ref|YP_004653539.1| tRNA/rRNA methyltransferase YsgA [Parachlamydia acanthamoebae UV-7]
gi|336481087|emb|CCB87685.1| uncharacterized tRNA/rRNA methyltransferase YsgA [Parachlamydia
acanthamoebae UV-7]
Length = 254
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 112/196 (57%), Gaps = 26/196 (13%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
++++++S NP VKH +K+RQ+S YR H S ++ G+T I E+ +T + L
Sbjct: 7 NIRSLSSLQNPLVKHLVKIRQNSDYRQEHQSVVLEGSTVIAEV--------AKTHPIKRL 58
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
L +D +P + + ++V ++ K+SG+Q S + +A +K+P+
Sbjct: 59 LTVDLCLIPSEIS--AEEILQVDQAILDKISGMQHSPGV--LAEVKMPSP---------- 104
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
S +I +LVL+ I DPGNLGTL+R+A+AF W +F++ CD F+EKA+R++RG
Sbjct: 105 ----SPLKNIRSLLVLNQINDPGNLGTLIRSALAFGWEXIFIVNQSCDIFNEKAIRSARG 160
Query: 258 ACFQLPIVSGSWYHLE 273
A F+LP G LE
Sbjct: 161 ATFRLPYRKGDLQELE 176
>gi|406987824|gb|EKE08037.1| hypothetical protein ACD_17C00378G0002 [uncultured bacterium]
Length = 238
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 117/227 (51%), Gaps = 37/227 (16%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K ITS +P V C++LR+ YR G LVVG R +QE V +D L+
Sbjct: 4 KKITSLQHPLVLECVRLREDHHYREKKGLVLVVG----------QRMVQE--VAIDTLIT 51
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+ E PE D + ++ VS V+KK++G+ + A+ + +P DV+QK+
Sbjct: 52 TE--ECPE-FD--AKNSYFVSEAVLKKITGLSHPDGYAALLPLPLPQ-----DVSQKQF- 100
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
++VLD IQDPGNLGTLLRT +A W GV + PG D F++KALRA++GA
Sbjct: 101 ----------LVVLDQIQDPGNLGTLLRTVLALNWDGVIVTPGTVDLFNDKALRAAKGAH 150
Query: 260 FQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGN---EEPRQVLQLSQE 303
F LP + + + F M L G ++PR V+ LS E
Sbjct: 151 FFLPYARMTRDEVAQMNLHFYMADLEGEDLDEIVFQKPRAVI-LSHE 196
>gi|303279154|ref|XP_003058870.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460030|gb|EEH57325.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 352
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 113/212 (53%), Gaps = 25/212 (11%)
Query: 50 SAHEYINYNDNININDDADDGRKFALPYHVKN--ITSTSNPFVKHCLKLRQSSSYRHSHG 107
+A + NY+D D R A P + +TST N VKH KL ++ +YR
Sbjct: 98 TAAAHTNYDD---------DARDLAYPEIEGDLRVTSTDNAQVKHFAKLVKNRAYRDEKR 148
Query: 108 SALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE-VPEGLDNISTHTVRVSSVVMKK 166
S +V G + EI F + ++ D + D VE +P G+ + +R V+KK
Sbjct: 149 SVVVAGGDLLTEI--FQGAGGDQLPDADVMFARDDVEELPRGVR--ARVVIRAPEHVVKK 204
Query: 167 LSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPS---IHRILVLDGIQDPGNLG 223
SG++S++ ++ +A + +P+ V + A S+ P I R+L LDGIQDPGNLG
Sbjct: 205 ASGLRSADGVDFVASLAMPSIVGA------GALTASFDPKTKPIRRVLALDGIQDPGNLG 258
Query: 224 TLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
TL+RT++A W V LLPG CDPF++K AS
Sbjct: 259 TLVRTSLALGWDAVALLPGTCDPFNDKVRFAS 290
>gi|326504182|dbj|BAJ90923.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 217
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 85/139 (61%), Gaps = 7/139 (5%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K + S +NP VK C++LR S++YR S ++VG PI EI +V +DCLLL
Sbjct: 52 KQVASVANPLVKRCVRLRDSAAYRRSCRRLVLVGLAPILEICRLG------SVAIDCLLL 105
Query: 140 LDKVEVPEGLDNISTHTV-RVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
LD EVP+ L +S +V VS+ VMKK+SG+QS +S EAIA+M +P + ++ A
Sbjct: 106 LDGAEVPDELRELSGGSVVHVSATVMKKISGMQSVDSTEAIAVMHMPRHFCDLGDDEGGA 165
Query: 199 DCRSWFPSIHRILVLDGIQ 217
+ F S RILVLDGIQ
Sbjct: 166 GLDASFQSPKRILVLDGIQ 184
>gi|308806822|ref|XP_003080722.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
gi|116059183|emb|CAL54890.1| SpoU rRNA Methylase family protein (ISS), partial [Ostreococcus
tauri]
Length = 247
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 95/165 (57%), Gaps = 10/165 (6%)
Query: 141 DKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
D E P+ +D + VR + VMKK +GV + + ++ I ++P + ++ A
Sbjct: 40 DWAEKPDWID--ADRVVRAPASVMKKCAGVNNGDGLDLIGEFEMPEVMDGKSFAKRFAGR 97
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
R+ R L L+G+QDPGNLGTL RTA+AF W V LLPG CDPF++KA+RA+RGA F
Sbjct: 98 RT-----TRTLALEGVQDPGNLGTLARTAVAFGWDTVALLPGTCDPFNDKAMRAARGATF 152
Query: 261 QLPIVS-GSWYHLEVLKDEFQMKLLAGHAGGNE--EPRQVLQLSQ 302
+L V+ S+ LE E M L A +E +P +V +++
Sbjct: 153 RLNFVTFDSFDELERAARELGMDLYAAEPRADEDVDPERVGDVAK 197
>gi|338734141|ref|YP_004672614.1| tRNA/rRNA methyltransferase YsgA [Simkania negevensis Z]
gi|336483524|emb|CCB90123.1| uncharacterized tRNA/rRNA methyltransferase YsgA [Simkania
negevensis Z]
Length = 242
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 108/201 (53%), Gaps = 33/201 (16%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
+ITS +P+VKH +KLR + YR+ + + G + L E + + L++
Sbjct: 2 DITSLQHPYVKHLVKLRINRKYRYEKNAIFIEG----------KKLLSELRLPLKTLIVR 51
Query: 141 DKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
+ E L +T+ V S V +K+SGVQ+ E I A +I F+ D++QK+
Sbjct: 52 EGEET--SLQAATTY--YVPSNVFEKISGVQAPEGIAA----EIDMPPFA-DLSQKK--- 99
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
R+L LD I DPGNLGTL+RTA+A + GVFL DP++EKALRA++GA F
Sbjct: 100 --------RVLALDQINDPGNLGTLIRTALALGFDGVFLTENSVDPYNEKALRAAKGATF 151
Query: 261 QLPIVSGSWYHLEVLKDEFQM 281
++P+ G LE F +
Sbjct: 152 KIPLQIGD---LETFARSFHL 169
>gi|302852751|ref|XP_002957894.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f.
nagariensis]
gi|300256771|gb|EFJ41030.1| hypothetical protein VOLCADRAFT_99057 [Volvox carteri f.
nagariensis]
Length = 701
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 61/80 (76%)
Query: 205 PSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
P+ R+LVLD +QDPGNLG+L R+A+AF W G+FLLPGCCDPF++KALR+SRGA +LP
Sbjct: 434 PAAVRLLVLDAVQDPGNLGSLARSALAFGWDGLFLLPGCCDPFNDKALRSSRGALLRLPT 493
Query: 265 VSGSWYHLEVLKDEFQMKLL 284
V+G L + +E + LL
Sbjct: 494 VTGDLVELLEVAEEVGLVLL 513
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
V I+S SN +VKH ++LR + SYR L+VG ++E+ + S + + L
Sbjct: 239 EVHFISSASNNYVKHLVRLRSNVSYRREVRRGLLVGAELLQEVAGDSPS----PLHVRVL 294
Query: 138 LLLDKV-EVPEGLDNISTHTVRVSSVVMKK-----------LSGVQSSESIEAIALMKIP 185
LL + +P G ++ + VS VMKK +SGV S+ +EAIA + +P
Sbjct: 295 LLPEGAPPLPPGTRVVADRVLEVSEAVMKKVGEWFGGGWGWVSGVMSAAGVEAIAEVDLP 354
Query: 186 T 186
Sbjct: 355 A 355
>gi|412988549|emb|CCO17885.1| RNA methyltransferase, TrmH family [Bathycoccus prasinos]
Length = 392
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 121/251 (48%), Gaps = 49/251 (19%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREI-----YNFNRSLQERTVRMDC 136
++S N K KLR S ++R S ++VG+T +REI + +++T+R+
Sbjct: 82 LSSAENATAKRIAKLRTSKTFREKEKSVVIVGSTVLREILQAGALGASEEKKKKTIRVKS 141
Query: 137 LLLL-----------------------------DKVEVPEGLDNISTHTVRVSSVVMKKL 167
LL D ++ G + + ++ VMKKL
Sbjct: 142 LLFAMEKKKTSRDGESYDDDSQTTTTTRDALRRDIADIAGGEEAKNRTEYYATAKVMKKL 201
Query: 168 SGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLR 227
+GV++++ I+ +A +++P + +E I ++L LDG+QDPGN+GTLLR
Sbjct: 202 AGVENADGIDLVAELEMPEIREVTEFMMQE-------KRIEKVLCLDGVQDPGNVGTLLR 254
Query: 228 TAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGH 287
TA AF + V L P CDPF++K +R+S+G F++ + +W E EF L+ G
Sbjct: 255 TAEAFGFDAVGLGPKTCDPFNDKCVRSSKGTAFRMQMF--TWKTNE----EFFEGLVNG- 307
Query: 288 AGGNEEPRQVL 298
G E R VL
Sbjct: 308 -GTFELKRNVL 317
>gi|159491280|ref|XP_001703599.1| predicted protein [Chlamydomonas reinhardtii]
gi|158270618|gb|EDO96457.1| predicted protein [Chlamydomonas reinhardtii]
Length = 148
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 57/70 (81%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
R+LVLDG+QDPGNLGTL+R+A+AF W G+FLLPGCCDP ++KA+RASRGA +LP+ +G
Sbjct: 12 RLLVLDGVQDPGNLGTLVRSALAFGWHGLFLLPGCCDPLNDKAVRASRGAVLRLPVAAGQ 71
Query: 269 WYHLEVLKDE 278
L+ +E
Sbjct: 72 LRELQEAAEE 81
>gi|365845443|ref|ZP_09386214.1| RNA methyltransferase, TrmH family [Flavonifractor plautii ATCC
29863]
gi|364560282|gb|EHM38224.1| RNA methyltransferase, TrmH family [Flavonifractor plautii ATCC
29863]
Length = 252
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 95/194 (48%), Gaps = 22/194 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS NP + +L R + G L GT + E + + LL
Sbjct: 1 MERITSRQNPLITRLRRLGAEKKTRRAQGVFLCEGTKLVGEALRWGPPPE--------LL 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ + P V V +++ +S V++ + + +A+ + P D E
Sbjct: 53 AVAEGTAPPAELPAGVRVVEVPEALLRAVSTVETPQGM--LAVCRTP------DTAPPET 104
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
P R+LVLDG+QDPGN+GT+ RTA AF G+FLLPGC +PF+ K +RA+ GA
Sbjct: 105 -----LPE-GRLLVLDGVQDPGNVGTVWRTADAFGAAGLFLLPGCAEPFAPKTVRATMGA 158
Query: 259 CFQLPIVSGSWYHL 272
CF+LP+ G+ L
Sbjct: 159 CFRLPVWEGTLEDL 172
>gi|373118105|ref|ZP_09532241.1| hypothetical protein HMPREF0995_03077 [Lachnospiraceae bacterium
7_1_58FAA]
gi|371667669|gb|EHO32788.1| hypothetical protein HMPREF0995_03077 [Lachnospiraceae bacterium
7_1_58FAA]
Length = 252
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 99/207 (47%), Gaps = 22/207 (10%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS NP + +L R + G L GT + E + + LL
Sbjct: 1 MERITSRQNPLITRLRRLGAEKKTRRAQGVFLCEGTKLVGEALRWGPPPE--------LL 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ + P V V +++ +S V++ + + +A+ + P D E
Sbjct: 53 AVAEGTAPPAELPAGVRVVEVPEALLRAVSTVETPQGM--LAVCRTP------DTAPPET 104
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
P R+LVLDG+QDPGN+GT+ RTA AF G+FLLPGC +PF+ K +RA+ GA
Sbjct: 105 -----LPE-GRLLVLDGVQDPGNVGTVWRTADAFGAAGLFLLPGCAEPFAPKTVRATMGA 158
Query: 259 CFQLPIVSGSWYHLEVLKDEFQMKLLA 285
CF+LP+ G+ L L + L A
Sbjct: 159 CFRLPVWEGTLEDLTGLLARSAVSLYA 185
>gi|388499162|gb|AFK37647.1| unknown [Lotus japonicus]
Length = 157
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 54/70 (77%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K ITS SNPFVKH LKLR +SSYR SHGS LVVG TPIREIY F SLQ+ ++ MD L++
Sbjct: 55 KLITSASNPFVKHYLKLRNNSSYRRSHGSVLVVGATPIREIYRFQESLQDESIIMDYLII 114
Query: 140 LDKVEVPEGL 149
DK E+P GL
Sbjct: 115 PDKAEIPNGL 124
>gi|406983467|gb|EKE04661.1| hypothetical protein ACD_20C00031G0002 [uncultured bacterium]
Length = 247
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 115/226 (50%), Gaps = 29/226 (12%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K I S+SN ++ +KLR+ +R L+V I ++ +T +D L++
Sbjct: 3 KIIKSSSNSYINQIIKLRKEKKFRLQKKKVLIVEKNTINDLI--------KTQNLDTLIV 54
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
K E+ E + + + V+ +MKK++ VQS + I A+ D + E
Sbjct: 55 TKK-ELIETYPQ-AKNVLVVTDKIMKKITNVQSPQEIAAV-----------FDYSPIEIK 101
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
++ +L+LD I DPGNLGT++R+A+A + + L C DPF++KALR+++G+
Sbjct: 102 NTNY------VLILDNISDPGNLGTIIRSALALNFDLIILTKNCTDPFNDKALRSAKGST 155
Query: 260 FQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELA 305
F +P++ + E+L Q K+ A A + E + + L + LA
Sbjct: 156 FHIPML--TLDEKEILNFITQKKINAYLADIDGENIKNVALKKPLA 199
>gi|456014368|gb|EMF47983.1| rRNA methylase [Planococcus halocryophilus Or1]
Length = 255
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 96/189 (50%), Gaps = 21/189 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S+ N VKH KL + R LV G ++ + + L+
Sbjct: 1 MKRIESSQNSLVKHWKKLSTTRKERDKFAEFLVEG-------FHLTEEALRKKDLVKSLI 53
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ + V++PEG D V++ V K++S + ++ I A + T E
Sbjct: 54 VREGVDIPEGWDIEGVPHYSVTAAVAKEISETEHTQGIFAHCAQPVFT----------ED 103
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ +SW ++L++D +QDPGN+GT++RTA A V L GC DPF+ KA+R+++G+
Sbjct: 104 EQKSW----TKLLMIDAVQDPGNIGTMIRTASASGIDAVILGKGCADPFNPKAVRSAQGS 159
Query: 259 CFQLPIVSG 267
FQ+P+V G
Sbjct: 160 HFQIPVVKG 168
>gi|428183097|gb|EKX51956.1| hypothetical protein GUITHDRAFT_134270 [Guillardia theta CCMP2712]
Length = 183
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 19/129 (14%)
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
L+D++ +P +T + VS V +K+SG++++E + +A + +P ++
Sbjct: 41 LIDRLSLPP-----TTDVIVVSPDVFRKISGLETTEGRQVLAEIGLP----------EQC 85
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D R+ RI+VLD IQDPGNLGTLLRTA W LL GC DPF+EKA+RA+RGA
Sbjct: 86 DLRT----SKRIIVLDRIQDPGNLGTLLRTAAGLGWDAALLLDGCSDPFNEKAIRAARGA 141
Query: 259 CFQLPIVSG 267
++L + G
Sbjct: 142 QWRLGVCYG 150
>gi|154500974|ref|ZP_02039012.1| hypothetical protein BACCAP_04660 [Bacteroides capillosus ATCC
29799]
gi|150269998|gb|EDM97517.1| RNA methyltransferase, TrmH family [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 252
Score = 90.9 bits (224), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 38/215 (17%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+++ITS NP + KL QS + R G + G I E + ++ +L
Sbjct: 1 MEHITSRQNPLMVRIKKLGQSRALRREEGVFVCEGPKLIEEALKWGACVET-------IL 53
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ +P+GL + V V +++ +S V++ + + A+
Sbjct: 54 AAEGKPLPQGLTG-ESRQVEVPDSLLRAVSSVETPQGLLAV------------------- 93
Query: 199 DCRSWFPSI--------HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
CR+ P + R LVLDG+QDPGNLGT+ RTA AF G+ L+ GC DP+S K
Sbjct: 94 -CRN--PGLTPPDKLTGGRYLVLDGVQDPGNLGTIWRTADAFGADGLLLVNGCADPWSPK 150
Query: 251 ALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
+RA+ GACF+LP + L D + L A
Sbjct: 151 TIRATMGACFRLPAWETDLETVRALLDGADIPLYA 185
>gi|427714401|ref|YP_007063025.1| rRNA methylase [Synechococcus sp. PCC 6312]
gi|427378530|gb|AFY62482.1| rRNA methylase [Synechococcus sp. PCC 6312]
Length = 265
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 89/189 (47%), Gaps = 35/189 (18%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS NP VK C +L Q YRH H L+ GT I E VR L++
Sbjct: 2 ITSLHNPLVKQCRQLHQGK-YRHRHQQLLLEGTHLIMEAC---------AVRYPLLMVYS 51
Query: 142 KVE-------VPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
+ + L I+ H VS V+ L+ Q+ + I AIA + PTS +
Sbjct: 52 TPAWQGKNPVLYQHLQEIAEHLESVSETVLAALATTQTPDGIVAIAPRR-PTSSLEL--- 107
Query: 195 QKEADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
H + LVL+GIQDPGNLGTL+RTA A G++L PGC D K LR
Sbjct: 108 -------------HSLGLVLEGIQDPGNLGTLIRTAAAAGVEGIYLGPGCVDLEHPKVLR 154
Query: 254 ASRGACFQL 262
AS G F+L
Sbjct: 155 ASAGQWFRL 163
>gi|406671031|ref|ZP_11078274.1| hypothetical protein HMPREF9706_00534 [Facklamia hominis CCUG
36813]
gi|405581336|gb|EKB55366.1| hypothetical protein HMPREF9706_00534 [Facklamia hominis CCUG
36813]
Length = 255
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 107/196 (54%), Gaps = 24/196 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S +N VK KL Q++ R G+ L+ G I+E ++ ++ +R D + D
Sbjct: 4 IQSKNNDRVKGWRKL-QTAKGRKQAGAYLIEGPHLIQEALKTSQVMEWLLIREDWV---D 59
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSV-FSIDVNQKEADC 200
K+ + EG+D ++++ L+ Q S+ I +A+++IP + FS+ +
Sbjct: 60 KLGLIEGIDE--DRVIQLAKEAFDSLAMTQQSQGI--MAVLQIPATCHFSLKGD------ 109
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
R L+ DG+QDPGNLGTL+RTA A GV L GC D +++K +R+S+G+ +
Sbjct: 110 --------RYLLCDGVQDPGNLGTLIRTADAAGLSGVVLNQGCVDLYNDKVIRSSQGSLW 161
Query: 261 QLPIVSGSWYHLEVLK 276
LPI+ G W + ++L+
Sbjct: 162 HLPILQG-WRNDQILE 176
>gi|224542074|ref|ZP_03682613.1| hypothetical protein CATMIT_01248 [Catenibacterium mitsuokai DSM
15897]
gi|224525007|gb|EEF94112.1| RNA methyltransferase, TrmH family [Catenibacterium mitsuokai DSM
15897]
Length = 242
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 32/191 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S +N +K +KL+ + R G LV G + E C L++
Sbjct: 2 IQSVNNKTIKDLVKLKNKKT-RDEKGLFLVDGFHMVEEAKKAGL----------CDLVIS 50
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
E EG D + + VS VM+KLS ++ + I A+ ++K+ +
Sbjct: 51 TDESLEGQDKV----LVVSDSVMEKLSYTKTPQPIMAVC-------------HKKDNILK 93
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+ R+L+LDG+QDPGNLGT+LR+A+AF + + + P C D +++KALR+++GA F
Sbjct: 94 HY----DRVLILDGVQDPGNLGTILRSALAFGFKQIVMSPDCVDLYNDKALRSTQGAVFH 149
Query: 262 LPIVSGSWYHL 272
L IV +H+
Sbjct: 150 LDIVRDDLHHV 160
>gi|299535511|ref|ZP_07048832.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis
ZC1]
gi|298728711|gb|EFI69265.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis
ZC1]
Length = 254
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 109/204 (53%), Gaps = 28/204 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIRE-IYNFNRSLQERTVRMDCL 137
+K I ST N VK+ KL + R G LV G + E + N N+ LQ +
Sbjct: 1 MKRIESTQNALVKYWKKLATTRKERERSGEFLVEGFHLVEEALKNKNQVLQ--------I 52
Query: 138 LLLDKVEVPE--GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
++ + +++P +D+I+ V VS+ V K+ + ++S+ + A+ K P V ++
Sbjct: 53 IVREGIDLPMLWPIDDIAI--VEVSTAVAKEFAETETSQGV--FAVCKQPVLVDNV---- 104
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
+W ++L++D +QDPGN+GT++RTA A V L GC D ++ K LRA+
Sbjct: 105 ----MTTW----RKVLLIDAVQDPGNIGTMIRTADAADLDAVILGKGCADLYNPKTLRAA 156
Query: 256 RGACFQLPIVSGSWYH-LEVLKDE 278
+G+ F +P+V G +++L+D+
Sbjct: 157 QGSHFHIPVVRGDLAEWIDILQDQ 180
>gi|424739195|ref|ZP_18167616.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis
ZB2]
gi|422946833|gb|EKU41238.1| putative tRNA/rRNA methyltransferase [Lysinibacillus fusiformis
ZB2]
Length = 254
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 109/204 (53%), Gaps = 28/204 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIRE-IYNFNRSLQERTVRMDCL 137
+K I ST N VK+ KL + R G LV G + E + N N+ LQ +
Sbjct: 1 MKRIESTQNALVKYWKKLATTRKERERSGEFLVEGFHLVEEALKNKNQVLQ--------I 52
Query: 138 LLLDKVEVPE--GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
++ + +++P +D+I+ V VS+ V K+ + ++S+ + A+ K P V ++
Sbjct: 53 IVREGIDLPMLWPIDDIAI--VEVSTAVAKEFAETETSQGV--FAVCKQPVLVDNV---- 104
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
+W ++L++D +QDPGN+GT++RTA A V L GC D ++ K LRA+
Sbjct: 105 ----MTTW----RKVLLIDAVQDPGNIGTMIRTADAAGLDAVILGKGCADLYNPKTLRAA 156
Query: 256 RGACFQLPIVSGSWYH-LEVLKDE 278
+G+ F +P+V G +++L+D+
Sbjct: 157 QGSHFHIPVVRGDLAEWIDILQDQ 180
>gi|78042655|ref|YP_360402.1| TrmH family RNA methyltransferase [Carboxydothermus
hydrogenoformans Z-2901]
gi|77994770|gb|ABB13669.1| RNA methyltransferase, TrmH family protein [Carboxydothermus
hydrogenoformans Z-2901]
Length = 258
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 29/216 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I+S N F K KL Q S++R +G +V G + E+ N L+ L+
Sbjct: 2 IKKISSPENSFYKELKKLYQDSAFRRKNGMFIVEGEKLVFELITDNWPLK-------YLV 54
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ + + +D+ V ++ + K+S + + I A+A MK
Sbjct: 55 VSESYWQAKKIDDDGVKIVVLTDQLFNKISELVTPPGILAVACMK--------------- 99
Query: 199 DCRSWFPSIH--RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
SW P+ LVLDG+QDPGN+GTLLR A F GV LLP D ++ K +RAS
Sbjct: 100 -SLSW-PAGKDGAFLVLDGLQDPGNVGTLLRAAFGFGVSGVILLPPAVDIYNPKVIRASA 157
Query: 257 GACFQLPIVSGSWYHLE--VLKDEFQMKLLAGHAGG 290
G F+ P++ L+ +LK+ + LA GG
Sbjct: 158 GTAFKFPVLRMEADELKDIILKNNIPL-FLAESEGG 192
>gi|323490473|ref|ZP_08095680.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis
MPA1U2]
gi|323395877|gb|EGA88716.1| putative tRNA/rRNA methyltransferase [Planococcus donghaensis
MPA1U2]
Length = 255
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 21/189 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VKH KL + R LV G ++ + + L+
Sbjct: 1 MKRIESNQNSLVKHWKKLSTTRKERDKFAEFLVEG-------FHLTEEALRKKDLVKSLI 53
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ + V++PEG D V++ V K++S + ++ I A T E
Sbjct: 54 VREGVDIPEGWDIEGVAHYSVTATVAKEISETEHTQGIFAHCAQPEFT----------ED 103
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ +SW ++L++D +QDPGN+GT++RTA A V L GC DP++ K +R+++G+
Sbjct: 104 EQKSWT----KLLMIDAVQDPGNIGTMIRTASASGIDAVILGKGCADPYNPKTVRSAQGS 159
Query: 259 CFQLPIVSG 267
FQ+ IV G
Sbjct: 160 HFQISIVKG 168
>gi|392529793|ref|ZP_10276930.1| putative RNA methylase [Carnobacterium maltaromaticum ATCC 35586]
Length = 254
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 98/198 (49%), Gaps = 28/198 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ I ST N VK+ KL Q+ R G+ L+ G I E S+ E + D L
Sbjct: 1 METILSTKNERVKNWKKL-QTKKGREQAGAYLIEGIHLIDEAIKNQASISELIISEDKQL 59
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
LD +D + VS+ + K+LS ++S+ + A+ M +P E
Sbjct: 60 NLD-------IDYPVEKQILVSAEISKQLSETETSQGVFAVLQMLVP-----------EN 101
Query: 199 DCRSWFPSIHR-ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
D P + + +L LD +QDPGN+GT++RTA A +GGV L G D ++ K +R+ +G
Sbjct: 102 D-----PDLTKPLLFLDNVQDPGNVGTMIRTADAAGFGGVVLGKGSVDLYNSKVIRSMQG 156
Query: 258 ACFQLPIVSG---SWYHL 272
+ F LPI G W+ L
Sbjct: 157 SHFHLPIYQGDLQEWFDL 174
>gi|375090461|ref|ZP_09736775.1| hypothetical protein HMPREF9708_01165 [Facklamia languida CCUG
37842]
gi|374565222|gb|EHR36493.1| hypothetical protein HMPREF9708_01165 [Facklamia languida CCUG
37842]
Length = 256
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 102/189 (53%), Gaps = 25/189 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL--L 139
I S NP ++ KL Q++ R G LV G + E + +++L E + ++ + L
Sbjct: 4 IESKQNPRIRAWRKL-QTAKNRRKQGRYLVEGDHLLEEALS-HQALIETVLYVEDYMGPL 61
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
L++V L+ ++VS + K+L+ ++ + I +A++K+ TS + D
Sbjct: 62 LNQV-----LER-KIEMIQVSRDIFKELAMTETPQGI--MAVIKMDTSSMT--------D 105
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
+ L+ D IQDPGNLGT++RTA A W GV L PGC D +++K LRAS+G+
Sbjct: 106 LKG-----QSYLICDAIQDPGNLGTMIRTADAAGWDGVLLAPGCVDLYNDKVLRASQGSI 160
Query: 260 FQLPIVSGS 268
+ LPIV S
Sbjct: 161 WHLPIVMAS 169
>gi|340357355|ref|ZP_08679973.1| TrmH family RNA methyltransferase [Sporosarcina newyorkensis 2681]
gi|339617803|gb|EGQ22417.1| TrmH family RNA methyltransferase [Sporosarcina newyorkensis 2681]
Length = 256
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K I ST N VKH KL + R LV G + E + + VR D
Sbjct: 7 KRIESTQNSLVKHWKKLVTTRKERDQTNEFLVEGFHLVEEAIKHKDLVIQLLVRED---- 62
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+++P D + +++ V K++S + ++ + A K P EAD
Sbjct: 63 ---LDIPAHWD---VPIIELTAAVSKEISETEQTQGV--FAYCKQP--------QYDEAD 106
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
W R+L++D +QDPGN+GT++RTA A V L GC DPF+ K +R+++G+
Sbjct: 107 HHEW----KRLLLIDAVQDPGNIGTMIRTADAAGLDAVVLGKGCADPFNPKTVRSAQGSH 162
Query: 260 FQLPIVSGS 268
F +P+V G
Sbjct: 163 FHIPVVRGE 171
>gi|414084442|ref|YP_006993150.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Carnobacterium maltaromaticum LMA28]
gi|412998026|emb|CCO11835.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Carnobacterium maltaromaticum LMA28]
Length = 254
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 98/198 (49%), Gaps = 28/198 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ I ST N VK+ KL Q+ R G+ L+ G I E S+ E + D L
Sbjct: 1 METILSTKNERVKNWKKL-QTKKGREQAGAYLIEGIHLIDEAIKNQASISELIISEDKQL 59
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
LD +D + VS+ + K+LS ++S+ + A+ M +P E
Sbjct: 60 NLD-------IDYPVEKQILVSAEISKQLSETETSQGVFAVLQMLVP-----------EN 101
Query: 199 DCRSWFPSIHR-ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
D P + + +L LD +QDPGN+GT++RTA A +GGV L G D ++ K +R+ +G
Sbjct: 102 D-----PDLTKPLLFLDNVQDPGNVGTMIRTADAAGFGGVVLGKGSVDLYNSKVIRSMQG 156
Query: 258 ACFQLPIVSG---SWYHL 272
+ F LPI G W+ L
Sbjct: 157 SHFHLPIYQGDLQEWFDL 174
>gi|160934427|ref|ZP_02081814.1| hypothetical protein CLOLEP_03300 [Clostridium leptum DSM 753]
gi|156867100|gb|EDO60472.1| RNA methyltransferase, TrmH family [Clostridium leptum DSM 753]
Length = 270
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 92/192 (47%), Gaps = 32/192 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIRE-IYNFNRSLQ--------ERTV 132
ITS NP VKH +L +S+ +R + L G R+ Y+ R L+ ER
Sbjct: 5 ITSKENPAVKHAARLLKSAKFRRQEEAFLAEGVRLCRDAAYSGVRILRMFYTEEALERYP 64
Query: 133 RMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID 192
+ D LL +K E + ++ ++L+G ++ P +F +
Sbjct: 65 K-DVELLREKAE--------------RAFLLSQQLAG--------GLSATVTPQGIFCVC 101
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
+ DC + ++L L+ IQDP NLGT+LRTA A GGV L GCCD +S K L
Sbjct: 102 AMLDKTDCLDKMDASGQLLGLEDIQDPSNLGTVLRTAEALGIGGVILTRGCCDIYSPKVL 161
Query: 253 RASRGACFQLPI 264
R S GA F+LP+
Sbjct: 162 RGSMGAVFRLPM 173
>gi|344205018|ref|YP_004790160.1| RNA methyltransferase, TrmH family [Mycoplasma putrefaciens KS1]
gi|343956941|gb|AEM68656.1| RNA methyltransferase, TrmH family [Mycoplasma putrefaciens KS1]
Length = 255
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 24/181 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITST+NP +K LKL++S +R++ LV G + E YN N + + + + L +
Sbjct: 4 ITSTANPKIKEILKLKESK-HRNAKNLFLVEGFHMVLEAYNHN--MVKTLLGTEKSLKVL 60
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
K E+P NI + +S V KKLS +S+ I A+ M + NQ + D
Sbjct: 61 KDEIP----NID-QVIEISDNVCKKLSETITSQEIFAVCSMP--------EKNQIDLD-- 105
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
H IL+LD IQDPGNLGTL+R+A +F + V P ++K LRA++G F+
Sbjct: 106 ------HNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSAHFHNQKVLRATQGNLFK 159
Query: 262 L 262
+
Sbjct: 160 V 160
>gi|169829514|ref|YP_001699672.1| tRNA/rRNA methyltransferase [Lysinibacillus sphaericus C3-41]
gi|168994002|gb|ACA41542.1| Hypothetical tRNA/rRNA methyltransferase [Lysinibacillus sphaericus
C3-41]
Length = 254
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 25/189 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I ST N VK+ KL + R G +V G I E + + VR
Sbjct: 1 MKRIESTQNALVKYWKKLATTRKERERSGEFIVEGFHLIEEALKHKEQVLQIIVR----- 55
Query: 139 LLDKVEVPE--GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
+ V++P +D I+ V V+SVV K+ + ++S+ + A+ K P V ++
Sbjct: 56 --EGVDLPMLWPIDGIAI--VEVTSVVAKEFAETETSQGV--FAICKQP-------VLEE 102
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
EA SW ++L++D +QDPGN+GT++RTA A V L GC D ++ K LRA++
Sbjct: 103 EAKT-SW----RKVLLIDAVQDPGNIGTMIRTADAAGLDAVILGKGCADIYNPKTLRAAQ 157
Query: 257 GACFQLPIV 265
G+ F +P+V
Sbjct: 158 GSHFHIPVV 166
>gi|433461382|ref|ZP_20418992.1| RNA methyltransferase [Halobacillus sp. BAB-2008]
gi|432190209|gb|ELK47252.1| RNA methyltransferase [Halobacillus sp. BAB-2008]
Length = 244
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 98/205 (47%), Gaps = 35/205 (17%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS N VK KL + YR G LV G + E+ + ++ E R
Sbjct: 2 LTSVQNTKVKEWKKLHKRK-YRKQTGQFLVEGHHLVEEVLASDWTVLELIRR-------- 52
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
EG D + ++V+ V + + V +E+ + IA + V QK
Sbjct: 53 -----EGTDFTAPPEIKVTEVDAQVFAAVAETETPQGIAAV----------VEQK---TY 94
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+ P+ R L++D +QDPGN+GTL+RTA A + V L G DPF++K +RA++G+ F
Sbjct: 95 EFLPA-KRTLMIDAVQDPGNIGTLIRTADAAGFDQVLLGTGSVDPFNDKVIRATQGSIFH 153
Query: 262 LPIVSGSWYHLEVLKDEFQMKLLAG 286
LPI++G EF +L AG
Sbjct: 154 LPILTGEL-------TEFMDELKAG 171
>gi|410459260|ref|ZP_11313012.1| 23S rRNA methyltransferase [Bacillus azotoformans LMG 9581]
gi|409930453|gb|EKN67452.1| 23S rRNA methyltransferase [Bacillus azotoformans LMG 9581]
Length = 251
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 24/190 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+ I ST NP VK KL Q+ R+ G L+ G I E + ++E VR
Sbjct: 2 ITRIESTQNPRVKQWKKL-QTKKERNKTGLFLIEGLHLIEEALKYKAYVKELIVREGTEY 60
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
L LD V+ +M +S ++ + I A+ MK PT + N A
Sbjct: 61 SL--------LDARDIDIFEVTEDIMNTISDTETPQGIAAVCGMKGPTPI-----NIATA 107
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++L++D +QDPGNLGT++RTA A V L GC D ++ K +R+++G+
Sbjct: 108 ----------KLLLIDNVQDPGNLGTMIRTADAVGMDAVILGEGCVDLYNGKVIRSTQGS 157
Query: 259 CFQLPIVSGS 268
F +PI+ G+
Sbjct: 158 LFHIPIMDGN 167
>gi|392971751|ref|ZP_10337144.1| putative RNA methyltransferase [Staphylococcus equorum subsp.
equorum Mu2]
gi|403046928|ref|ZP_10902397.1| rRNA methylase [Staphylococcus sp. OJ82]
gi|392510290|emb|CCI60432.1| putative RNA methyltransferase [Staphylococcus equorum subsp.
equorum Mu2]
gi|402763624|gb|EJX17717.1| rRNA methylase [Staphylococcus sp. OJ82]
Length = 246
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 25/185 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N VK+ +KL++ R G AL+ G I E Y N ++++ L ++D
Sbjct: 4 ITSAQNSKVKNAIKLKKKRE-RDKTGRALIEGYHLIEEAYKSN-------LKIEQLYVVD 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ +G+ N + ++ V + LSG + + A+++ P + A+ +
Sbjct: 56 IERLDDGMINHADEVFEINLKVAEALSGTVTPQGF--FAVIEKPV--------HETANAQ 105
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
++L++D IQDPGNLGTL+RTA A + L G DP+ +K +RAS+G+ F
Sbjct: 106 -------QVLLIDCIQDPGNLGTLIRTADAAGLDLIVLEKGTADPYQDKVMRASQGSVFH 158
Query: 262 LPIVS 266
+PIV+
Sbjct: 159 IPIVT 163
>gi|261368263|ref|ZP_05981146.1| SpoU rRNA methylase family protein [Subdoligranulum variabile DSM
15176]
gi|282569778|gb|EFB75313.1| RNA methyltransferase, TrmH family [Subdoligranulum variabile DSM
15176]
Length = 257
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 89/184 (48%), Gaps = 23/184 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S NP +K+ +R S R + G G E+ +S RT L
Sbjct: 6 ISSRENPKIKYACSVRDSEKQRAADGLFFAEGPKLCLELA---KSCTPRTAYATEAALAK 62
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ S + + V+ V +KL+G +SS+ + L + P + ++
Sbjct: 63 TPAL------ASLNPMPVAPHVAEKLAGTKSSQGV--FVLFETPQTDPAL---------- 104
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
S RIL L+G+QDPGN+GTLLR+A AF + V L PGC PFS K LR+S GA +
Sbjct: 105 --LDSARRILALEGVQDPGNVGTLLRSAAAFGFDAVVLGPGCAAPFSPKTLRSSMGAAGR 162
Query: 262 LPIV 265
LP+V
Sbjct: 163 LPVV 166
>gi|323342892|ref|ZP_08083124.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|336066305|ref|YP_004561163.1| SpoU rRNA methylase family protein [Erysipelothrix rhusiopathiae
str. Fujisawa]
gi|322464004|gb|EFY09198.1| TrmH family RNA methyltransferase [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|334296251|dbj|BAK32122.1| SpoU rRNA methylase family protein [Erysipelothrix rhusiopathiae
str. Fujisawa]
Length = 235
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 88/184 (47%), Gaps = 37/184 (20%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N FVKHC KL + YR H L+ G I+E + ++T+ +
Sbjct: 3 ITSLQNDFVKHCTKLSKKK-YRDEHNEVLIEGEHLIQEANT--AGIVKKTIGL------- 52
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ V+++ + +KLS S A++ P KEAD
Sbjct: 53 ----------TESDDVQITEHIAQKLSNTISGS--HQFAIISKPQREL------KEAD-- 92
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
R L+ DG+QDPGNLGT++RTA +F + V + C D F++K +R+++G+ F
Sbjct: 93 -------RYLICDGVQDPGNLGTIIRTAHSFGFDAVIVSETCVDEFNDKVIRSTQGSIFH 145
Query: 262 LPIV 265
+P++
Sbjct: 146 IPVI 149
>gi|293374145|ref|ZP_06620479.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909]
gi|325837433|ref|ZP_08166415.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1]
gi|292647248|gb|EFF65224.1| RNA methyltransferase, TrmH family [Turicibacter sanguinis PC909]
gi|325490965|gb|EGC93263.1| RNA methyltransferase, TrmH family [Turicibacter sp. HGF1]
Length = 248
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 49/59 (83%)
Query: 208 HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
HR+L+LD +QDPGNLGTLLR+A+AF + GV L GC D ++EK +R+++GA F+LPI++
Sbjct: 104 HRLLLLDRVQDPGNLGTLLRSAVAFGFDGVILGDGCVDLYNEKVIRSTQGAIFKLPILN 162
>gi|403668425|ref|ZP_10933695.1| tRNA/rRNA methyltransferase [Kurthia sp. JC8E]
Length = 271
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 99/201 (49%), Gaps = 23/201 (11%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
+K I S N VK+ KL + R G LV G + E +L+ V+ L
Sbjct: 20 EMKYIESNQNALVKYWKKLATTRKERDKSGEFLVEGYHLVEE------ALKHTEVQH--L 71
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
++ + E+P + + VS + K+L+ + ++ I A QKE
Sbjct: 72 IISEGTEIPASWNLDDIFLIEVSEPIAKELAETEHTQGIFA-------------QCKQKE 118
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
AD S S ++L++D +QDPGN+GT++RTA A + V L G DP++ K +RA++G
Sbjct: 119 AD-ESAKASWTKLLLIDAVQDPGNVGTMIRTADAAGFDAVVLGKGSADPYNPKTVRATQG 177
Query: 258 ACFQLPIVSGSWYHL-EVLKD 277
+ F +P++ G + + LKD
Sbjct: 178 SIFHIPVLRGDLLDMIDELKD 198
>gi|379727290|ref|YP_005319475.1| rRNA methylase [Melissococcus plutonius DAT561]
gi|376318193|dbj|BAL61980.1| rRNA methylase [Melissococcus plutonius DAT561]
Length = 261
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 100/207 (48%), Gaps = 27/207 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I ST N +K KL+Q YR +V G + E N N+S+ + +L
Sbjct: 1 MKEILSTKNILIKEWRKLQQKK-YRQDQKKYIVEGFHLVEEAINTNQSI-------ESIL 52
Query: 139 LLDK--VEVPEGL-DNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
L K +E E L D + + VS VM LS + + + I AI M+ + I V+
Sbjct: 53 LTSKGKMEWEEWLLDKDFSQIIIVSEEVMHYLSRLPTPQGILAIIAMQEEREIKDIMVD- 111
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
W L+LD IQDPGN+GT++RTA A GV L G D +S K LR+
Sbjct: 112 -----GGW-------LLLDNIQDPGNVGTMIRTADAAGLAGVILGEGTADIYSTKTLRSM 159
Query: 256 RGACFQLPIVSGSWYHLEVLKDEFQMK 282
+G+ + LPI+ S L + +FQ K
Sbjct: 160 QGSNYHLPILHAS---LPAVLSQFQEK 183
>gi|227498595|ref|ZP_03928739.1| RNA methyltransferase [Acidaminococcus sp. D21]
gi|352684219|ref|YP_004896204.1| RNA methyltransferase [Acidaminococcus intestini RyC-MR95]
gi|226904051|gb|EEH89969.1| RNA methyltransferase [Acidaminococcus sp. D21]
gi|350278874|gb|AEQ22064.1| RNA methyltransferase [Acidaminococcus intestini RyC-MR95]
Length = 263
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 90/189 (47%), Gaps = 20/189 (10%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K +TS N VK L+Q YR G LV G +RE+ + + ++ T L
Sbjct: 2 IKRLTSLQNETVKKAASLQQKK-YRLREGLFLVEGVRAVREVRSSSWTV---TAYFFTDL 57
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
D + +G D V+ +MKKL+ + +S+ A+ V KE
Sbjct: 58 PEDFQKEAQGSD---IPYYEVTGDIMKKLTATEEPQSLAAL-------------VRLKER 101
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ P ILVLD I DPGN+GT++RTA A GV LL G D ++ K +RA+ G
Sbjct: 102 SLETVHPERGLILVLDEIHDPGNVGTMIRTARAMNAQGVILLSGSADLYNPKVVRAAMGN 161
Query: 259 CFQLPIVSG 267
F +P+ +G
Sbjct: 162 LFHIPVFTG 170
>gi|326791660|ref|YP_004309481.1| tRNA/rRNA methyltransferase SpoU [Clostridium lentocellum DSM 5427]
gi|326542424|gb|ADZ84283.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium lentocellum DSM
5427]
Length = 263
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 21/186 (11%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K ITS N +K+ +L++ S R S G ++ G ++EI + V++ L+
Sbjct: 4 KQITSPQNNVIKNIKELQKKKSARKSEGLFVIEGIRGVKEIPSH--------VKIKYLIT 55
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+V+ E + + VS + +S QS + A+A M PT D
Sbjct: 56 TSEVDEKELGAVKAEERLEVSKEIYNSISDTQSPQGAMAVAYM--PTY-----------D 102
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
+ LVL+ +QDPGNLGT++RTA AF + GVF+ G D +S K +R++ +
Sbjct: 103 LVHFNIEAGHYLVLENLQDPGNLGTIIRTAHAFDFKGVFITKGSVDLYSPKVVRSTMSSL 162
Query: 260 FQLPIV 265
F +PIV
Sbjct: 163 FHVPIV 168
>gi|313884616|ref|ZP_07818374.1| RNA methyltransferase, TrmH family [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620126|gb|EFR31557.1| RNA methyltransferase, TrmH family [Eremococcus coleocola
ACS-139-V-Col8]
Length = 258
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
ITS N +K KL S R + + L+ G ++E LQ + L
Sbjct: 6 EITSKQNQSIKEWRKLHTSKGRRKAR-AFLIEGDHLVQEALKAGLPLQ--ALMATPAYLG 62
Query: 141 DKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
D E+ D T ++ + + LS Q + + A+ ++ QK A
Sbjct: 63 DHEEL---FDQDHCDTYLLTPGLAQYLSQTQQDQGVFAV-----------VESKQKPA-- 106
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
S PS HR+L+LD IQDPGNLGT++RTA A + V L GC DP+++K LRA++G+ +
Sbjct: 107 -SLDPSWHRLLLLDAIQDPGNLGTMIRTADAAGFDAVILGQGCVDPYNDKVLRATQGSIW 165
Query: 261 QLPIV 265
LP++
Sbjct: 166 HLPVI 170
>gi|384500844|gb|EIE91335.1| hypothetical protein RO3G_16046 [Rhizopus delemar RA 99-880]
Length = 316
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 95/208 (45%), Gaps = 21/208 (10%)
Query: 72 KFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERT 131
K P K I ++ + KH +KLR+S YRH + ++ G I+E+ + S+
Sbjct: 5 KHIFPQIFKRIPNSKSLPAKHLIKLRESKQYRHEKKAVVIQGLKTIKELRDQGLSIHSVI 64
Query: 132 V------RMDCLLLLDKVEVPEGLDNISTHTVRVSSV-VMKKLSGVQSSESIEAIALMKI 184
V R + + L ++ + D++ T ++ V + +++ G S I
Sbjct: 65 VTAKKEPREEDEIKLPAKQIIQYPDSLPAKTYYLTDVDLTRRILGTASRPGAHEI----- 119
Query: 185 PTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCC 244
I + Q + F R+LV D I DPGNLGTL+RTA W + G C
Sbjct: 120 ---YAEIGIMQHD------FTPSDRLLVFDKINDPGNLGTLVRTAKGLGWTSGIITSGTC 170
Query: 245 DPFSEKALRASRGACFQLPIVSGSWYHL 272
D +++K +RASRG P + S+ HL
Sbjct: 171 DLYNDKTIRASRGLSLTWPHETLSFEHL 198
>gi|229087115|ref|ZP_04219265.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44]
gi|228696183|gb|EEL49018.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-44]
Length = 265
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +++ L+
Sbjct: 12 MKNIDSLQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEEALKAGVAVE--------LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVSDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D + L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 DLTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|126652676|ref|ZP_01724837.1| rRNA methylase [Bacillus sp. B14905]
gi|126590525|gb|EAZ84643.1| rRNA methylase [Bacillus sp. B14905]
Length = 254
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 27/190 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIRE-IYNFNRSLQERTVRMDCL 137
+K I ST N VK+ KL + R G +V G + E + N + LQ +
Sbjct: 1 MKRIESTQNALVKYWKKLATTRKERERSGEFIVEGFHLVEEALKNKEQVLQ--------I 52
Query: 138 LLLDKVEVPE--GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
++ + V++P +D I+ + V+SVV K+ + ++S+ + A+ K P
Sbjct: 53 IVREGVDLPMLWPIDGIAI--IEVTSVVAKEFAETETSQGV--FAICKQPAL-------- 100
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
+E SW ++L++D +QDPGN+GT++RTA A V L GC D ++ K LRA+
Sbjct: 101 EEEVKASW----RKVLLIDAVQDPGNIGTMIRTADAAGLDAVILGKGCADVYNPKTLRAA 156
Query: 256 RGACFQLPIV 265
+G+ F +P+V
Sbjct: 157 QGSHFHIPVV 166
>gi|312898933|ref|ZP_07758321.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis
F0359]
gi|310620095|gb|EFQ03667.1| RNA methyltransferase, TrmH family [Megasphaera micronuciformis
F0359]
Length = 271
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 105/227 (46%), Gaps = 27/227 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K ITS N VK ++L+Q YR+ + G + + + CL+
Sbjct: 1 MKEITSRDNRLVKLAVRLQQKK-YRYEERRLIAEGFRIVEDAVHMG------ITDGICLV 53
Query: 139 LLDKVEVPEGLDNISTHTVRVS-------SVVMKKLSGVQSSESIEAIALMKIPTSVFSI 191
+ VE PE L N+ + +V + +K+ SS+ I AI +P ++
Sbjct: 54 AAEIVERPE-LQNLQAESEKVGWEWYLLPDRIYEKVKETHSSQGITAI----LPFFEYTF 108
Query: 192 DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
+ A+ R IL L+ IQDPGNLGT+LRTA A G VFL P C D ++ K
Sbjct: 109 KNLPEVANERP-------ILYLEAIQDPGNLGTILRTAAAANVGAVFLSPDCVDLYNGKT 161
Query: 252 LRASRGACFQLPIVSG-SWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
+R++ GA F++P+V S + DE + L G N+ QV
Sbjct: 162 VRSAMGAIFKVPVVQNVSLERISAFCDEKKRILTGTLLGANKLYTQV 208
>gi|448238995|ref|YP_007403053.1| tRNA/rRNA methyltransferase domain protein [Geobacillus sp. GHH01]
gi|445207837|gb|AGE23302.1| tRNA/rRNA methyltransferase domain protein [Geobacillus sp. GHH01]
Length = 250
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 26/189 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VK KL R G L+ G + E N L E L+
Sbjct: 1 MKRIESPKNARVKQWKKLLTKKG-RDETGLFLLEGFHLVEEAVKSNAPLVE-------LM 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ ++ +P G D +S V V+ VMK +S ++ + I A+ K+P
Sbjct: 53 VDERTAIPPGWD-VSVPVVIVTEAVMKAISSTETPQGIAAVC-RKLPAE----------- 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L++D +QDPGNLGT++RTA A V L GC D ++ K +RA++G+
Sbjct: 100 -----LEGVKTALLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADVYNPKVVRATQGS 154
Query: 259 CFQLPIVSG 267
F LP+V G
Sbjct: 155 LFHLPVVKG 163
>gi|384253155|gb|EIE26630.1| hypothetical protein COCSUDRAFT_46165 [Coccomyxa subellipsoidea
C-169]
Length = 321
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 44/71 (61%)
Query: 223 GTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMK 282
G+L+RTA W GV+LLPGCCDPF++KALRASRGA F+LPI G W L + + +
Sbjct: 4 GSLMRTAAGLGWDGVYLLPGCCDPFNDKALRASRGAAFKLPIAVGDWQGLGQIAEHHNLT 63
Query: 283 LLAGHAGGNEE 293
N E
Sbjct: 64 CFGAEPHDNTE 74
>gi|138896271|ref|YP_001126724.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
gi|196250227|ref|ZP_03148921.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
gi|134267784|gb|ABO67979.1| rRNA methyltransferase [Geobacillus thermodenitrificans NG80-2]
gi|196210411|gb|EDY05176.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. G11MC16]
Length = 251
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 85/192 (44%), Gaps = 31/192 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VKH KL R G L+ G + E L E L+
Sbjct: 1 MKRIESPKNARVKHWKKLLTKKG-REETGCFLLEGFHLVEEAVKSQAPLVE-------LI 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ ++ +P G D V V+ VMK +S ++ + I AI
Sbjct: 53 VDERTTIPPGWDVSDVPVVIVTETVMKAISSTETPQGIAAI------------------- 93
Query: 199 DCRS---WFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
CR + L++D +QDPGNLGT++RTA A V L GC D ++ K +RA+
Sbjct: 94 -CRQRPHELTGVKTALLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVIRAT 152
Query: 256 RGACFQLPIVSG 267
+G+ F LP+V G
Sbjct: 153 QGSLFHLPVVKG 164
>gi|224476244|ref|YP_002633850.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420851|emb|CAL27665.1| SpoU rRNA Methylase family protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 248
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 23/188 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +KH + R G LV GT I E ++++ +
Sbjct: 1 MEQITSAQNAKIKHA-NKLKKKKERDKSGLVLVEGTHLIDEAVKSRLTIKQLFIVEPERF 59
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ +E E +++ V + LSG + P +F+I ++
Sbjct: 60 DIELIEAAE-------EQYQINFKVAEALSGTVT------------PQGIFAI---IEKP 97
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L+LD IQDPGNLGTL+RTA A + + PG DPF +K LRAS+G+
Sbjct: 98 DVSKQVEVAKQVLLLDRIQDPGNLGTLIRTADAAALDLIVMSPGSADPFQDKVLRASQGS 157
Query: 259 CFQLPIVS 266
F LPI+S
Sbjct: 158 VFHLPIIS 165
>gi|323340004|ref|ZP_08080270.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC
25644]
gi|417974004|ref|ZP_12614832.1| 23S rRNA methyltransferase [Lactobacillus ruminis ATCC 25644]
gi|323092510|gb|EFZ35116.1| TrmH family RNA methyltransferase [Lactobacillus ruminis ATCC
25644]
gi|346329633|gb|EGX97924.1| 23S rRNA methyltransferase [Lactobacillus ruminis ATCC 25644]
Length = 255
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 20/187 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS+SN VK KL Q + R G ++ G ++E F++ + E V D +
Sbjct: 4 ITSSSNQRVKDWKKLSQKKA-RIKQGKYMLDGWHLVKEAILFDQPISEILVTQD-FKHRN 61
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++EVP DN+ + +S V K LS S + I A++ +P + + K+A
Sbjct: 62 ELEVP---DNV--EVIEISDNVAKHLSETPSPQGI--FAVVNLPENA---EEKPKKA-TG 110
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+W L LDG+QDPGN+GT++RTA A + GV GC D F K +RA +G+ F
Sbjct: 111 AW-------LFLDGVQDPGNIGTMVRTADACGFSGVVFGEGCADMFQPKVVRAMQGSQFH 163
Query: 262 LPIVSGS 268
L + SG+
Sbjct: 164 LKLCSGN 170
>gi|383648793|ref|ZP_09959199.1| tRNA/rRNA methyltransferase [Sphingomonas elodea ATCC 31461]
Length = 267
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 103/227 (45%), Gaps = 37/227 (16%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVRM 134
+ IT+ SNP +K LR +R G L G + E R T R
Sbjct: 3 REITAYSNPLIKRMRNLRDKR-HRREEGLFLAEGLRILTEAREAGRIPDYLFYTAETARH 61
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
++ L G + I T+ + ++ KLSG + ++ + F++D+
Sbjct: 62 PLVVALVTATEARGGEAIETN-----ADILSKLSGKDNPGAVVGV------YPEFALDLA 110
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
Q + RS P LV + ++DPGNLGT+LRT A GG+ LL C DPFS +A+RA
Sbjct: 111 QID---RSTAPIW---LVAERLRDPGNLGTILRTGDAVGAGGLILLDDCVDPFSVEAVRA 164
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLS 301
S GA F +P+ W +EF+ L AG P Q++ LS
Sbjct: 165 SMGALFTVPVARARW-------EEFEPWLRAG-------PGQLVGLS 197
>gi|335996524|ref|ZP_08562441.1| 23S rRNA methyltransferase [Lactobacillus ruminis SPM0211]
gi|335351594|gb|EGM53085.1| 23S rRNA methyltransferase [Lactobacillus ruminis SPM0211]
Length = 255
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 20/187 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS+SN VK KL Q + R G ++ G ++E F++ + E V D +
Sbjct: 4 ITSSSNQRVKDWKKLSQKKA-RIKQGKYMLDGWHLVKEAILFDQPISEILVTQD-FKHRN 61
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++EVP DN+ + +S V K LS S + I A++ +P + + K+A
Sbjct: 62 ELEVP---DNV--EIIEISDNVAKHLSETPSPQGI--FAVVNLPENA---EEKPKKA-TG 110
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+W L LDG+QDPGN+GT++RTA A + GV GC D F K +RA +G+ F
Sbjct: 111 AW-------LFLDGVQDPGNIGTMVRTADACGFSGVVFGEGCADMFQPKVVRAMQGSQFH 163
Query: 262 LPIVSGS 268
L + SG+
Sbjct: 164 LKLCSGN 170
>gi|389819510|ref|ZP_10209378.1| tRNA/rRNA methyltransferase [Planococcus antarcticus DSM 14505]
gi|388463308|gb|EIM05672.1| tRNA/rRNA methyltransferase [Planococcus antarcticus DSM 14505]
Length = 255
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 91/189 (48%), Gaps = 21/189 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VKH KL + R LV G ++ + + L+
Sbjct: 1 MKRIESNQNSLVKHWKKLGTTRKERDKFVEFLVEG-------FHLTEEALRKKELVKSLI 53
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ + V++P D V++ V K++S + ++ I A T E
Sbjct: 54 VREGVDIPADWDIEGVPHYSVTAGVAKEISETEHTQGIFAHCAQPEFT----------ED 103
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ ++W ++L++D +QDPGN+GT++RTA A V L GC DP++ K +R+++G+
Sbjct: 104 EQKTWT----KLLLIDAVQDPGNIGTMIRTASASGIDAVILGKGCADPYNPKTIRSAQGS 159
Query: 259 CFQLPIVSG 267
FQ+P+V G
Sbjct: 160 HFQIPVVKG 168
>gi|23099587|ref|NP_693053.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
gi|22777817|dbj|BAC14088.1| rRNA methylase [Oceanobacillus iheyensis HTE831]
Length = 246
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 94/187 (50%), Gaps = 26/187 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N VK KL + R + L+ G I+E N +QE L++++
Sbjct: 2 ITSIKNEKVKSWKKLHRRKE-RLKTNTFLIDGIHLIQEALKSNWVIQE-------LIVVE 53
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
E+P ++ VS V+K++S Q+ + + A+ M IP Q++ +
Sbjct: 54 GYELPNDAKDVPV--AYVSENVLKEISQTQTPQGVIAVVEMNIPKV-------QEDNNL- 103
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
I++LD IQDPGN+GT++RTA A V L GC D F++K +RA++G+ F
Sbjct: 104 --------IILLDAIQDPGNMGTIIRTADAAGVDAVVLGDGCVDIFNDKVIRATQGSIFH 155
Query: 262 LPIVSGS 268
+PI + +
Sbjct: 156 IPIYTAT 162
>gi|403384319|ref|ZP_10926376.1| tRNA/rRNA methyltransferase [Kurthia sp. JC30]
Length = 252
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 22/189 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VK+ KL + R G LV G + E L L+
Sbjct: 1 MKFIESNQNALVKYWKKLATTRKERDKSGEFLVEGFHLVEEALKHTDVLH--------LI 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ + VE+P D + + V+ + K+L+ + ++ I A QK
Sbjct: 53 VREGVEIPSDWDIDNVFLIEVTDAIAKELAETEHTQGIFA-------------QCKQKAF 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D + S ++L++D +QDPGN+GT++RTA A V L G DP++ K +R+++G+
Sbjct: 100 DASAQ-SSWTKLLLVDAVQDPGNIGTMIRTADAAGIDAVVLGKGSADPYNPKTVRSTQGS 158
Query: 259 CFQLPIVSG 267
F +P+V G
Sbjct: 159 IFHIPVVRG 167
>gi|320528149|ref|ZP_08029314.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204]
gi|320131497|gb|EFW24062.1| RNA methyltransferase, TrmH family [Solobacterium moorei F0204]
Length = 247
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 69/111 (62%), Gaps = 17/111 (15%)
Query: 155 HTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLD 214
H V V+ +M KLS ++ ++ IA+ + Q++ D +R+L+LD
Sbjct: 66 HIVEVTPAIMAKLS--ENVSNVHYIAVCR-----------QRKLDITKQ----NRLLLLD 108
Query: 215 GIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
GIQDPGNLGTL+RTA++F + GV+ CD +++KA+R+++GA F +P+V
Sbjct: 109 GIQDPGNLGTLIRTAISFGFDGVYCSTETCDLYNDKAIRSTQGALFHIPVV 159
>gi|227485251|ref|ZP_03915567.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC
51172]
gi|227236711|gb|EEI86726.1| possible rRNA methyltransferase [Anaerococcus lactolyticus ATCC
51172]
Length = 239
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 112/249 (44%), Gaps = 50/249 (20%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S SN K KL+ YR S ++ + E + ++D + L
Sbjct: 3 IESVSNQNFKFLNKLKMKK-YRDKENSFIIESKKLVDEAI-------ASSAKVDFIFL-- 52
Query: 142 KVEVPEGLDNISTH-TVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
EG+ ++H T+ + K+S + S + I A+ K P + S
Sbjct: 53 ----KEGVSYETSHKTLIFCESLFTKISSMTSPDGIGAVIKKKDPVEISS---------- 98
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
+IL+LDG DPGNLGT++R+A AF + V L+PG D ++EK LRAS G+ F
Sbjct: 99 -------SKILLLDGTNDPGNLGTMIRSAEAFGFKDVILMPGTADVYNEKTLRASMGSIF 151
Query: 261 QLPIVSGSWYHLEVLKDEFQMKLLAGHAG----------------GNEEPRQVLQLSQEL 304
+L I++ ++ ++ LK +++ L A G GN E + Q +E+
Sbjct: 152 RLNILNKTYDDIKKLKSCYRI-LSADMDGLDIRNYKKDSKIIIAIGN-EANGLSQEMREI 209
Query: 305 ADSFAGVPL 313
D F +P+
Sbjct: 210 TDEFIKIPM 218
>gi|57866640|ref|YP_188303.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
gi|242242436|ref|ZP_04796881.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
W23144]
gi|418612943|ref|ZP_13175964.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU117]
gi|418626717|ref|ZP_13189313.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU126]
gi|418634603|ref|ZP_13196996.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU129]
gi|420175077|ref|ZP_14681522.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM061]
gi|420189670|ref|ZP_14695638.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM037]
gi|420192820|ref|ZP_14698677.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM023]
gi|420204077|ref|ZP_14709637.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM015]
gi|420234312|ref|ZP_14738877.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH051475]
gi|57637298|gb|AAW54086.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
RP62A]
gi|242234143|gb|EES36455.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
W23144]
gi|374817253|gb|EHR81438.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU117]
gi|374831261|gb|EHR95003.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU126]
gi|374836826|gb|EHS00403.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU129]
gi|394244363|gb|EJD89708.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM061]
gi|394260636|gb|EJE05445.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM023]
gi|394261005|gb|EJE05807.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM037]
gi|394274091|gb|EJE18516.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM015]
gi|394304366|gb|EJE47771.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH051475]
Length = 246
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 25/193 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNSKIKNANKLKKKRE-RDKTGLALIEGIHLIEEAY-------QSQIEVIQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++D + + + + +++ V + LSG + + A++K PT D Q +
Sbjct: 53 IVDPDRMSSSIVDYAKEVYQINLKVAEALSGTVTPQGF--FAIIKKPTY----DKTQAK- 105
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++L++D IQDPGNLGTL+RTA A + + G DPF +K +RAS+G+
Sbjct: 106 ----------QVLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGS 155
Query: 259 CFQLPIVSGSWYH 271
F +P++ Y+
Sbjct: 156 IFHIPVIFDDIYN 168
>gi|30248779|ref|NP_840849.1| tRNA/rRNA methyltransferase SpoU [Nitrosomonas europaea ATCC 19718]
gi|30180374|emb|CAD84686.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas europaea ATCC
19718]
Length = 277
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 33/197 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHG-----------SALVVGTTPIREIYNFNRSL 127
+++ITS +P K KL+ S+ RH G S L G TP+ I + + S
Sbjct: 1 MRHITSREHPLFKKLFKLQHSARQRHDEGMTLLDGIHLLQSCLASGKTPVLLIVSESGSQ 60
Query: 128 QERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTS 187
++ L+ +DK D T + +S + ++S V++ I +AL+ IP
Sbjct: 61 HPEISQL--LIHIDK-------DPQKTDCLMLSDTLFNQISPVKTPVGI--LALIDIPQH 109
Query: 188 VFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPF 247
D Q ++L+GIQDPGNLG++LR+A A GVFL C D +
Sbjct: 110 TLPADTYQNSFS-----------ILLEGIQDPGNLGSMLRSAAAAGVEGVFLSSDCADAW 158
Query: 248 SEKALRASRGACFQLPI 264
S K LRA GA F L I
Sbjct: 159 SPKTLRAGMGAHFSLKI 175
>gi|332686708|ref|YP_004456482.1| rRNA methylase [Melissococcus plutonius ATCC 35311]
gi|332370717|dbj|BAK21673.1| rRNA methylase [Melissococcus plutonius ATCC 35311]
Length = 261
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 99/207 (47%), Gaps = 27/207 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I ST N +K KL+Q YR +V G + E N N+S+ + +L
Sbjct: 1 MKEILSTKNILIKEWRKLQQKK-YRQDQKKYIVEGFHLVEEAINTNQSI-------ESIL 52
Query: 139 LLDK--VEVPEGL-DNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
L K +E E L D + + VS VM LS + + + I AI M+ + I V+
Sbjct: 53 LTSKGKMEWEEWLLDKDFSQIIIVSEEVMHYLSKLPTPQGILAIIAMQEEREIKDIMVD- 111
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
W L+LD IQDPGN+GT++RTA A GV L G D +S K LR+
Sbjct: 112 -----GGW-------LLLDNIQDPGNVGTMIRTADAAGLAGVILGEGTADIYSTKTLRSM 159
Query: 256 RGACFQLPIVSGSWYHLEVLKDEFQMK 282
+G+ + L I+ S L + +FQ K
Sbjct: 160 QGSNYHLSILHAS---LPAVLSQFQEK 183
>gi|90961787|ref|YP_535703.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
gi|90820981|gb|ABD99620.1| 23S rRNA methyltransferase [Lactobacillus salivarius UCC118]
Length = 253
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN VK KL R ++ G ++E N+ ++E + L+
Sbjct: 3 ITSTSNSRVKEWKKLNTKKG-RKKQNKYILDGLHLVKEALKANKKVEELLIT-SKFEHLN 60
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++E+P+ T + +S V K +S Q+ + I I S+ + + D
Sbjct: 61 EIEIPD-----ETKVIMISEEVSKSISETQTPQGIFGIV------SIEEEKITYPQKDVG 109
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+W L+LDG+QDPGN+GT++RTA A + GV L G D ++ K +RA +G+ F
Sbjct: 110 AW-------LMLDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFH 162
Query: 262 LPIVS 266
+ +++
Sbjct: 163 IKVIN 167
>gi|417810310|ref|ZP_12456989.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius
GJ-24]
gi|335349106|gb|EGM50606.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius
GJ-24]
Length = 253
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN VK KL R ++ G ++E N+ ++E + L+
Sbjct: 3 ITSTSNSRVKEWKKLNTKKG-RKKQNKYILDGLHLVKEALKANKKVEELLIT-SKFEHLN 60
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++E+P+ T + +S V K +S Q+ + I I S+ + + D
Sbjct: 61 EIEIPD-----ETKVIMISEEVSKSISETQTPQGIFGIV------SIEEEKITYPQKDIG 109
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+W L+LDG+QDPGN+GT++RTA A + GV L G D ++ K +RA +G+ F
Sbjct: 110 AW-------LMLDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFH 162
Query: 262 LPIVS 266
+ +++
Sbjct: 163 IKVIN 167
>gi|417788304|ref|ZP_12435987.1| rRNA methylase [Lactobacillus salivarius NIAS840]
gi|334308481|gb|EGL99467.1| rRNA methylase [Lactobacillus salivarius NIAS840]
Length = 253
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN VK KL R ++ G ++E N+ ++E + L+
Sbjct: 3 ITSTSNSRVKEWKKLNTKKG-RKKQNKYILDGLHLVKEALKANKKVEELLIT-SKFEHLN 60
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++E+P+ T + +S V K +S Q+ + I I S+ + + D
Sbjct: 61 EIEIPD-----ETKVIMISEEVSKSISETQTPQGIFGIV------SIEEEKITYPQKDVG 109
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+W L+LDG+QDPGN+GT++RTA A + GV L G D ++ K +RA +G+ F
Sbjct: 110 AW-------LMLDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFH 162
Query: 262 LPIVS 266
+ +++
Sbjct: 163 IKVIN 167
>gi|386728816|ref|YP_006195199.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
71193]
gi|387602409|ref|YP_005733930.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus ST398]
gi|404478474|ref|YP_006709904.1| SpoU rRNA methylase family protein [Staphylococcus aureus
08BA02176]
gi|418309762|ref|ZP_12921313.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21331]
gi|418978621|ref|ZP_13526421.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
DR10]
gi|283470347|emb|CAQ49558.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus ST398]
gi|365237885|gb|EHM78724.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21331]
gi|379993445|gb|EIA14891.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
DR10]
gi|384230109|gb|AFH69356.1| 23S rRNA methyltransferase [Staphylococcus aureus subsp. aureus
71193]
gi|404439963|gb|AFR73156.1| SpoU rRNA Methylase family protein [Staphylococcus aureus
08BA02176]
Length = 246
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y +R + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QRGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|322435978|ref|YP_004218190.1| tRNA/rRNA methyltransferase SpoU [Granulicella tundricola MP5ACTX9]
gi|321163705|gb|ADW69410.1| tRNA/rRNA methyltransferase (SpoU) [Granulicella tundricola
MP5ACTX9]
Length = 263
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 21/211 (9%)
Query: 75 LPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRM 134
+ + + +TS +NP +K Q + R S G V G + E ++L+
Sbjct: 1 MSFSGQVVTSRTNPRLKQLRAAFQGQA-RLSSGLIAVEGEHMVEEALKSGQALK------ 53
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
+ L +++E+P + +V V SV + + + + + IA + +P + S++
Sbjct: 54 -TVFLSERMELPAYVP----ASVEVVSVASDVFASIAETRTPQGIAALLVPPA-HSVEKM 107
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ P IL+ G+QDPGNLGTL+R+A AF GV PG P+++KA+RA
Sbjct: 108 LEG-------PGEALILIAVGLQDPGNLGTLIRSAEAFGATGVLTTPGTVSPWNQKAMRA 160
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
S G+ F+LP+ + +E L+ + +KLLA
Sbjct: 161 SAGSVFRLPVAVATPDAMETLEQQ-GIKLLA 190
>gi|227890806|ref|ZP_04008611.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
gi|227867215|gb|EEJ74636.1| 23S rRNA methyltransferase [Lactobacillus salivarius ATCC 11741]
Length = 253
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN VK KL R ++ G ++E N+ ++E + L+
Sbjct: 3 ITSTSNSRVKEWKKLNTKKG-RKKQNKYILDGLHLVKEALKANKKVEELLIT-SKFEHLN 60
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++E+P+ T + +S V K +S Q+ + I I S+ + + D
Sbjct: 61 EIEIPD-----ETKVIMISKEVSKSISETQTPQGIFGIV------SIEEEKITYPQKDVG 109
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+W L+LDG+QDPGN+GT++RTA A + GV L G D ++ K +RA +G+ F
Sbjct: 110 AW-------LMLDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFH 162
Query: 262 LPIVS 266
+ +++
Sbjct: 163 IKVIN 167
>gi|366164702|ref|ZP_09464457.1| RNA methyltransferase [Acetivibrio cellulolyticus CD2]
Length = 267
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 30/220 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S+ NP +K L++ YR G + G + E +L+E+ + + +L+ D
Sbjct: 4 ISSSQNPVIKEIKALKEKK-YRDQTGLFFIEGIRFVEE------ALKEK-IEISKILVSD 55
Query: 142 KV-------EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
K+ E+ E L+N ++ V ++ K V +E+ P + +I +N
Sbjct: 56 KLADVHGGKEILEQLEN--SNCCNVYTLTNKLYMEVTDTEN---------PQGILAI-LN 103
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+K S + + + LVLD +QDPGN+GT++RTA A GV + GC D ++ K LR+
Sbjct: 104 KKSISLESVYDNKNFFLVLDSLQDPGNMGTIIRTADAAGVTGVIVSKGCVDVYNPKVLRS 163
Query: 255 SRGACFQLPIVSGS--WYHLEVLKDEFQMKLLAGHAGGNE 292
+ G+ F +PI LE +K++ ++L A H G++
Sbjct: 164 TMGSLFHIPICYSENILQTLEEMKNK-GIRLCAAHLSGSK 202
>gi|154505273|ref|ZP_02042011.1| hypothetical protein RUMGNA_02787 [Ruminococcus gnavus ATCC 29149]
gi|153794471|gb|EDN76891.1| putative RNA methyltransferase, TrmH family, group 3 [Ruminococcus
gnavus ATCC 29149]
Length = 275
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 121/259 (46%), Gaps = 37/259 (14%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K ITSTSN VK ++++ S R G + G +RE + ER V +
Sbjct: 5 KMITSTSNQRVKELSQIQKKSKIRSREGIFIAEGIRMVRE------TPHERLVGLYFSES 58
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+K E LD IS ++V + KK + + S ++ K P V ++ V+Q E
Sbjct: 59 FEKKYGKEVLDVISGGDLKVREQIRKK-TEILSDAVFSYVSDTKTPQGVLAV-VHQMEYT 116
Query: 200 CRSWFP-SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+I +++LD +QDPGNLGT+ RTA A G+ + C D ++ K +R++ GA
Sbjct: 117 LGQMTEGAIPHLMILDNLQDPGNLGTIFRTAEAAGVTGIIMSRDCVDIYNPKTIRSTMGA 176
Query: 259 CFQLPIVSGSWYHLEVLKD------EFQMKLLAGHAGG-----NEEPRQVLQ-------- 299
+++P V ++E L++ E +K A H G E+ RQ
Sbjct: 177 LYRMPFV-----YVEDLRETIHTLKEKNIKSYAAHLDGKNTYDKEDYRQGTAFLIGNEGN 231
Query: 300 -LSQEL---ADSFAGVPLC 314
L +E+ AD++ +P+C
Sbjct: 232 GLREEIAQCADTWIRIPMC 250
>gi|315658555|ref|ZP_07911427.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis
M23590]
gi|315496884|gb|EFU85207.1| TrmH family RNA methyltransferase [Staphylococcus lugdunensis
M23590]
Length = 246
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 25/191 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ KL++ R G AL+ G I E Y N ++++ L
Sbjct: 1 MEQITSAQNSKIKNANKLKKKRE-RDKTGQALIEGIHLIEEAYQSNLTIKQ-------LF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+++ + L + + T +++ V + LSG + + A+++ P + DV +
Sbjct: 53 IIEPERTEQALIDYAEETFQINMKVAETLSGTITPQGF--FAVIEKP----NYDVTHAK- 105
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++L++D IQDPGNLGTL+RTA A + + G D + +K LRAS+G+
Sbjct: 106 ----------QVLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADAYQDKVLRASQGS 155
Query: 259 CFQLPIVSGSW 269
F +P+V+
Sbjct: 156 VFHIPVVTADL 166
>gi|418637511|ref|ZP_13199830.1| RNA methyltransferase, TrmH family [Staphylococcus lugdunensis
VCU139]
gi|374838757|gb|EHS02292.1| RNA methyltransferase, TrmH family [Staphylococcus lugdunensis
VCU139]
Length = 246
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 96/191 (50%), Gaps = 25/191 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ KL++ R G AL+ G I E Y N ++++ L
Sbjct: 1 MEQITSAQNSKIKNANKLKKKRE-RDKTGQALIEGIHLIEEAYQSNLTIKQ-------LF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+++ + L + + T +++ V + LSG + + A+++ P + DV +
Sbjct: 53 VIEPERTEQALIDYAEETFQINMKVAEALSGTITPQGF--FAVIEKP----NYDVTHAK- 105
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++L++D IQDPGNLGTL+RTA A + + G D + +K LRAS+G+
Sbjct: 106 ----------QVLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADAYQDKVLRASQGS 155
Query: 259 CFQLPIVSGSW 269
F +P+V+
Sbjct: 156 VFHIPVVTADL 166
>gi|384044683|ref|YP_005492700.1| tRNA/rRNA methyltransferase SpoU [Bacillus megaterium WSH-002]
gi|345442374|gb|AEN87391.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus megaterium WSH-002]
Length = 254
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 23/194 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK I S NP VK KL R G +V G + E ++E +R
Sbjct: 3 VKQIDSVKNPQVKAWKKLHNKKD-RDKQGLFMVEGFHLVEEAIKNKDCVKELIIR----- 56
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ +EVP D V+ ++K LS ++ P + ++ K A
Sbjct: 57 --ESIEVPAQWDIDGIEITVVNEAIIKLLSDTET------------PQGIIAVCFQTKHA 102
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ + ++L+LD +QDPGNLGT++RTA A + + G D ++ K +R+++GA
Sbjct: 103 EI---IHTAQKVLLLDAVQDPGNLGTIIRTADAAGVDAIIVGEGSVDVYNPKVVRSTQGA 159
Query: 259 CFQLPIVSGSWYHL 272
F LPIV G +
Sbjct: 160 IFHLPIVKGDLLEM 173
>gi|385840410|ref|YP_005863734.1| 23S rRNA methyltransferase RumA [Lactobacillus salivarius CECT
5713]
gi|300214531|gb|ADJ78947.1| 23S ribosomal RNA methyltransferase [Lactobacillus salivarius CECT
5713]
Length = 253
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN VK KL R ++ G ++E N+ ++E + L+
Sbjct: 3 ITSTSNSRVKEWKKLNTKKG-RKRQNKYILDGLHLVKEALKANKKVEELLIT-SKFEHLN 60
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++E+P+ T + +S V K +S Q+ + I I S+ + + D
Sbjct: 61 EIEIPD-----ETKVIMISEEVSKSISETQTPQGIFGIV------SIEEEKITYPQKDVG 109
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+W L+LDG+QDPGN+GT++RTA A + GV L G D ++ K +RA +G+ F
Sbjct: 110 AW-------LMLDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGSQFH 162
Query: 262 LPIVS 266
+ +++
Sbjct: 163 IKVIN 167
>gi|392960896|ref|ZP_10326360.1| tRNA/rRNA methyltransferase (SpoU) [Pelosinus fermentans DSM 17108]
gi|421054886|ref|ZP_15517850.1| tRNA/rRNA methyltransferase (SpoU) [Pelosinus fermentans B4]
gi|421058111|ref|ZP_15520843.1| tRNA/rRNA methyltransferase (SpoU) [Pelosinus fermentans B3]
gi|421063585|ref|ZP_15525548.1| tRNA/rRNA methyltransferase (SpoU) [Pelosinus fermentans A12]
gi|421071765|ref|ZP_15532878.1| tRNA/rRNA methyltransferase (SpoU) [Pelosinus fermentans A11]
gi|392439989|gb|EIW17677.1| tRNA/rRNA methyltransferase (SpoU) [Pelosinus fermentans B4]
gi|392446353|gb|EIW23638.1| tRNA/rRNA methyltransferase (SpoU) [Pelosinus fermentans A11]
gi|392454463|gb|EIW31295.1| tRNA/rRNA methyltransferase (SpoU) [Pelosinus fermentans DSM 17108]
gi|392461480|gb|EIW37668.1| tRNA/rRNA methyltransferase (SpoU) [Pelosinus fermentans B3]
gi|392462617|gb|EIW38675.1| tRNA/rRNA methyltransferase (SpoU) [Pelosinus fermentans A12]
Length = 267
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 32/196 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQ--------ERTVR 133
ITS+ N F+K L++ +R G + G + E N S++ E R
Sbjct: 5 ITSSQNRFIKLAASLKEKK-FRDELGLFSIEGVRLVEEAAQANWSVEACVYITGAEEDQR 63
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ +LLL L + + + VS+ + K++ V+ + I +A+MK
Sbjct: 64 VHDVLLL--------LQSKNCRMIEVSAAIYGKITEVKQPQGI--MAIMK---------- 103
Query: 194 NQKEADCRSWFPSIHR--ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
++E ++ + ++VLD +QDPGN+GT++RTA+A GV L GC D F+ KA
Sbjct: 104 -KREYRLIDCLANVEKPLLVVLDEVQDPGNVGTIIRTAVAAGCTGVILTKGCSDVFAAKA 162
Query: 252 LRASRGACFQLPIVSG 267
+RAS G+ F +PI G
Sbjct: 163 VRASMGSLFYVPIFEG 178
>gi|332653528|ref|ZP_08419273.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
gi|332518674|gb|EGJ48277.1| RNA methyltransferase, TrmH family [Ruminococcaceae bacterium D16]
Length = 253
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 51/78 (65%)
Query: 208 HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
R LVLDG+QDPGN+GT+ R+A A G+ L+ GC DP+S K +RA+ GACF+LP+
Sbjct: 109 KRYLVLDGVQDPGNVGTIWRSADALGADGLLLVNGCADPYSPKVVRATMGACFRLPVWET 168
Query: 268 SWYHLEVLKDEFQMKLLA 285
+ LE L Q+ L A
Sbjct: 169 TVEELEGLLKTSQIPLYA 186
>gi|347525466|ref|YP_004832214.1| 23S rRNA methyltransferase [Lactobacillus ruminis ATCC 27782]
gi|345284425|gb|AEN78278.1| 23S rRNA methyltransferase [Lactobacillus ruminis ATCC 27782]
Length = 255
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 94/187 (50%), Gaps = 20/187 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS+SN VK KL Q + R ++ G ++E F++ + E V D +
Sbjct: 4 ITSSSNQRVKDWKKLSQKKA-RIKQEKYMLDGWHLVKEAILFDQPISEILVTQD-FKHRN 61
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++EVP DN+ + +S V K LS S + I A++ +P + + E
Sbjct: 62 ELEVP---DNV--EVIEISDNVAKHLSETPSPQGI--FAVVNLPENA----EEKPEKATG 110
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+W L LDG+QDPGN+GT++RTA A + GV GC D F K +RA +G+ F
Sbjct: 111 AW-------LFLDGVQDPGNIGTMVRTADACGFSGVVFGEGCADMFQPKVVRAMQGSQFH 163
Query: 262 LPIVSGS 268
L + SG+
Sbjct: 164 LKLCSGN 170
>gi|289551058|ref|YP_003471962.1| SpoU rRNA methylase [Staphylococcus lugdunensis HKU09-01]
gi|385784679|ref|YP_005760852.1| SpoU rRNA methylase family protein [Staphylococcus lugdunensis
N920143]
gi|418414354|ref|ZP_12987569.1| hypothetical protein HMPREF9308_00734 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180590|gb|ADC87835.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis
HKU09-01]
gi|339894935|emb|CCB54239.1| SpoU rRNA Methylase family protein [Staphylococcus lugdunensis
N920143]
gi|410876961|gb|EKS24858.1| hypothetical protein HMPREF9308_00734 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 246
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 25/191 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ KL++ R G AL+ G I E Y N ++++ L
Sbjct: 1 MEQITSAQNSKIKNANKLKKKRE-RDKTGQALIEGIHLIEEAYQSNLTIKQ-------LF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+++ + L + S T +++ V + LSG + P F++ + +
Sbjct: 53 IIEPERTEQALIDYSEETFQINMKVAEALSGTIT------------PQGFFAV-IEKPNY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D IQDPGNLGTL+R+A A + + G D + +K LRAS+G+
Sbjct: 100 DVTHA----KQVLLIDRIQDPGNLGTLIRSADAAGIDLIVMEKGTADAYQDKVLRASQGS 155
Query: 259 CFQLPIVSGSW 269
F +P+V+
Sbjct: 156 VFHIPVVTADL 166
>gi|421074006|ref|ZP_15535051.1| tRNA/rRNA methyltransferase (SpoU) [Pelosinus fermentans JBW45]
gi|392528015|gb|EIW51096.1| tRNA/rRNA methyltransferase (SpoU) [Pelosinus fermentans JBW45]
Length = 267
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 32/196 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQ--------ERTVR 133
ITS+ N F+K L++ +R G + G + E N S++ E R
Sbjct: 5 ITSSQNRFIKMAASLKEKK-FRDELGLFSIEGVRLVEEAAQANWSVEACVYITGAEEDQR 63
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ +LLL L + + + VS+ + K++ V+ + I +A+MK
Sbjct: 64 VQEVLLL--------LQSRNCRMIEVSAAIYGKITEVKHPQGI--MAIMK---------- 103
Query: 194 NQKEADCRSWFPSIHR--ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
++E ++ + ++VLD +QDPGN+GT++RTA A GV L GC D F+ KA
Sbjct: 104 -KREYRLVDCLANVEKPLLVVLDEVQDPGNVGTIIRTAAAAGCTGVILTKGCSDVFAAKA 162
Query: 252 LRASRGACFQLPIVSG 267
+RAS G+ F +PI G
Sbjct: 163 VRASMGSLFYVPIFEG 178
>gi|399046280|ref|ZP_10738738.1| rRNA methylase, putative, group 3 [Brevibacillus sp. CF112]
gi|433543519|ref|ZP_20499924.1| RNA methyltransferase [Brevibacillus agri BAB-2500]
gi|398055641|gb|EJL47702.1| rRNA methylase, putative, group 3 [Brevibacillus sp. CF112]
gi|432185193|gb|ELK42689.1| RNA methyltransferase [Brevibacillus agri BAB-2500]
Length = 271
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 91/191 (47%), Gaps = 22/191 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSL------QERTVRMD 135
ITS NP VK +L R G LV G + E N + QER++
Sbjct: 6 ITSVQNPLVKRLHQLLDKKG-REEQGRYLVEGAHLVEEALNSGAEVTTILYDQERSLDPA 64
Query: 136 CLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
C L P+ +T + S+ V+ KLS +S + I +A +K S + V++
Sbjct: 65 CQRAL--ANHPQ-----ATQVIAASAAVLAKLSETKSPQGI--VAAVKKTASQWDEWVDK 115
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
A + +L LD IQDPGNLGT+LRTA A GV L G D ++ K +RA+
Sbjct: 116 LSAKENAL------LLFLDEIQDPGNLGTILRTAEAAGVDGVVLGKGSVDIYNGKVVRAT 169
Query: 256 RGACFQLPIVS 266
GA F+LP+ S
Sbjct: 170 MGAMFRLPVFS 180
>gi|418961335|ref|ZP_13513222.1| 23S rRNA methyltransferase [Lactobacillus salivarius SMXD51]
gi|380345002|gb|EIA33348.1| 23S rRNA methyltransferase [Lactobacillus salivarius SMXD51]
Length = 253
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN VK KL R ++ G ++E N+ ++E + L+
Sbjct: 3 ITSTSNSRVKEWKKLNTKKG-RKRQNKYILDGLHLVKEALKANKKVEELLIT-SKFEHLN 60
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++E+P+ T + +S V K +S Q+ + I I S+ + + D
Sbjct: 61 EIEIPD-----ETKVIMISEEVSKSISETQTPQGIFGIV------SIEEEKITYPQKDVG 109
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+W L+LDG+QDPGN+GT++RTA A + GV L G D ++ K +RA +G+ F
Sbjct: 110 AW-------LMLDGVQDPGNIGTMVRTADAAGFTGVILGEGSADLYNPKVVRAMQGSQFH 162
Query: 262 LPIVS 266
+ +++
Sbjct: 163 IKVIN 167
>gi|301301196|ref|ZP_07207352.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851195|gb|EFK78923.1| RNA methyltransferase, TrmH family [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 253
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 20/185 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN VK KL R ++ G ++E N+ ++E + L+
Sbjct: 3 ITSTSNSRVKEWKKLNTKKG-RKRQNKYILDGLHLVKEALKVNKKVEELLIT-SKFEHLN 60
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++E+P+ T + +S V K +S Q+ + I I S+ + + D
Sbjct: 61 EIEIPD-----ETKVIMISEEVSKSISETQTPQGIFGIV------SIEEEKITYPQKDVG 109
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+W L+LDG+QDPGN+GT++RTA A + GV L G D ++ K +RA +G F
Sbjct: 110 AW-------LMLDGVQDPGNIGTMVRTADAAGFSGVILGEGSADLYNPKVVRAMQGCQFH 162
Query: 262 LPIVS 266
+ +++
Sbjct: 163 IKVIN 167
>gi|423437996|ref|ZP_17414977.1| hypothetical protein IE9_04177 [Bacillus cereus BAG4X12-1]
gi|401119609|gb|EJQ27420.1| hypothetical protein IE9_04177 [Bacillus cereus BAG4X12-1]
Length = 265
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGIVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V V++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEVIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|416124439|ref|ZP_11595435.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus epidermidis FRI909]
gi|418329203|ref|ZP_12940282.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
14.1.R1.SE]
gi|418614017|ref|ZP_13177007.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU118]
gi|418631987|ref|ZP_13194431.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU128]
gi|420177453|ref|ZP_14683789.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM057]
gi|420180247|ref|ZP_14686502.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM053]
gi|420198942|ref|ZP_14704626.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM031]
gi|319401549|gb|EFV89759.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus epidermidis FRI909]
gi|365230865|gb|EHM71940.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
14.1.R1.SE]
gi|374821886|gb|EHR85927.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU118]
gi|374833656|gb|EHR97331.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU128]
gi|394247837|gb|EJD93079.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM057]
gi|394251286|gb|EJD96385.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM053]
gi|394272628|gb|EJE17078.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM031]
Length = 246
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 93/187 (49%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNSKIKNANKLKKKRE-RDKTGLALIEGIHLIEEAY-------QSQIEVIQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++D + + + + +++ V + LSG + + A++K PT D Q +
Sbjct: 53 IVDPDRMSSSIVDYAKEVYQINLKVAEALSGTVTPQGF--FAIIKKPTY----DKTQAK- 105
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++L++D IQDPGNLGTL+RTA A + + G DPF +K +RAS+G+
Sbjct: 106 ----------QVLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGS 155
Query: 259 CFQLPIV 265
F +P++
Sbjct: 156 IFHIPVI 162
>gi|157273421|gb|ABV27320.1| TsnR [Candidatus Chloracidobacterium thermophilum]
Length = 282
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 33/206 (16%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
ITS +NP +K L R+ RH H V+ +R + +L+ + V
Sbjct: 5 TITSRNNPLIKRFLAAREG---RHRH----VIFIEGVRLV---EEALRSKIVFEAVAYTP 54
Query: 141 DKVEVPEG------LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
E P G L + R++ +M +S V+++ + I L + P+S D+
Sbjct: 55 RLYETPRGAQLLAALQSQPCRGARLTEALMAYISDVETAPGV--IVLGQRPSSTLP-DLT 111
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
A ++ DGIQ PGNLG L+RTA A G+ + G DPF KALRA
Sbjct: 112 HHPAPL---------FVLADGIQSPGNLGALIRTAEAAGATGILVTVGTVDPFQPKALRA 162
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQ 280
+ G+ F+LPI++GS + DE Q
Sbjct: 163 AAGSAFRLPIIAGSS-----VADELQ 183
>gi|417889095|ref|ZP_12533194.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21195]
gi|341853163|gb|EGS94045.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21195]
Length = 246
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MKQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|359462395|ref|ZP_09250958.1| tRNA/rRNA methyltransferase [Acaryochloris sp. CCMEE 5410]
Length = 261
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 86/182 (47%), Gaps = 19/182 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS NP +K KL+Q +R G L+ GT ++ + N S + + C
Sbjct: 2 ITSLQNPLIKQMRKLQQVK-HRRQQGKLLLEGTHLLQSAWEQNWSFE-----IVCYTDRW 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ + P+ I TVR+ V S E ++A A P V ++ V++
Sbjct: 56 QAKYPQLWQQIQGRTVRLEQV---------SPEVLQATATTVHPDGVVAV-VSRPATPA- 104
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
P L L+ IQDPGNLGTL+RTA+A + G+ L C D S K LRAS GA F
Sbjct: 105 --LPIQTLGLALETIQDPGNLGTLIRTAVATQVEGLLLNQQCADLESPKVLRASAGAWFH 162
Query: 262 LP 263
LP
Sbjct: 163 LP 164
>gi|228999340|ref|ZP_04158919.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17]
gi|229006894|ref|ZP_04164525.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4]
gi|228754347|gb|EEM03761.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock1-4]
gi|228760285|gb|EEM09252.1| RNA methyltransferase, TrmH [Bacillus mycoides Rock3-17]
Length = 257
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 25/192 (13%)
Query: 77 YHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDC 136
+ +KNI S NP VK KL Q+ R G V G + E +L+ +
Sbjct: 2 HRMKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVITE-- 52
Query: 137 LLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
L++ D+ ++P+ V ++K L ++++ + A+ + ++K
Sbjct: 53 LIVSDQTDLPKDWTVTDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEK 101
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
E + L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++
Sbjct: 102 EIALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQ 156
Query: 257 GACFQLPIVSGS 268
G+ F LPIV G+
Sbjct: 157 GSIFHLPIVKGN 168
>gi|228993286|ref|ZP_04153202.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442]
gi|228766354|gb|EEM14997.1| RNA methyltransferase, TrmH [Bacillus pseudomycoides DSM 12442]
Length = 257
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 25/192 (13%)
Query: 77 YHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDC 136
+ +KNI S NP VK KL Q+ R G V G + E +L+ +
Sbjct: 2 HRMKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVITE-- 52
Query: 137 LLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
L++ D+ ++P+ V ++K L ++++ + A+ + ++K
Sbjct: 53 LIVSDQTDLPKDWTVTDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEK 101
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
E + L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++
Sbjct: 102 EIALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQ 156
Query: 257 GACFQLPIVSGS 268
G+ F LPIV G+
Sbjct: 157 GSIFHLPIVKGN 168
>gi|423640369|ref|ZP_17615987.1| hypothetical protein IK9_00314 [Bacillus cereus VD166]
gi|401281285|gb|EJR87198.1| hypothetical protein IK9_00314 [Bacillus cereus VD166]
Length = 265
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +T + L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEEAL--------KTGIVTELI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|229163553|ref|ZP_04291503.1| RNA methyltransferase, TrmH [Bacillus cereus R309803]
gi|228619935|gb|EEK76811.1| RNA methyltransferase, TrmH [Bacillus cereus R309803]
Length = 265
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYMVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|390449513|ref|ZP_10235118.1| tRNA/rRNA methyltransferase SpoU [Nitratireductor aquibiodomus
RA22]
gi|389664010|gb|EIM75521.1| tRNA/rRNA methyltransferase SpoU [Nitratireductor aquibiodomus
RA22]
Length = 286
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 15/223 (6%)
Query: 76 PYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMD 135
P VK +TS +NP +K L Q YR + + G + + ++ +++
Sbjct: 11 PGQVKEVTSLTNPIIKDIRALAQKK-YRDREHAFIAEGQKLVIDAFDAGWTIR------- 62
Query: 136 CLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
LL E ++ ++ TV +V+ + S + + I P V + Q
Sbjct: 63 TLLYAKAGRGNEAVERLAARTVASGGLVL-----IVSEKVLSTITKRDNPQMVVGV-FEQ 116
Query: 196 KEADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
K + P+ + V LD ++DPGNLGT+LRT A GV L+ C DPFS + +RA
Sbjct: 117 KTVKLETVKPADGDVWVALDRVRDPGNLGTVLRTVDAVGAKGVILVGDCTDPFSFETVRA 176
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
+ G+ F +PIV + F +++ H G+ + R V
Sbjct: 177 TMGSIFAVPIVRTGEEAFLAWRKGFAGRVVGTHLKGSVDYRTV 219
>gi|329122151|ref|ZP_08250759.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
19965]
gi|327466958|gb|EGF12474.1| TrmH family RNA methyltransferase [Dialister micraerophilus DSM
19965]
Length = 271
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 98/192 (51%), Gaps = 27/192 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS +N ++K +LR YR + ++ G + E +++ + + C + +
Sbjct: 14 ITSLNNKWIKTVSQLRLKK-YRDKNNLFIMEGIRLVEE------AVKLKYSEVVCFIS-E 65
Query: 142 KVEVPEGLDNISTH-------TVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
V E + N+ + + VS VM KLSG + ++ I AI + I++
Sbjct: 66 NVTEKERIQNLIKNGNLLKWKILFVSEKVMNKLSGTKHTQGIVAIVKKR------CINLG 119
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ + + R + LD +QDPGN+GT++RTA A V L GC DP+SEKA+R+
Sbjct: 120 TLK------YKNNERYVFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRS 173
Query: 255 SRGACFQLPIVS 266
S G+ F++P+V+
Sbjct: 174 SMGSIFRIPVVT 185
>gi|313891493|ref|ZP_07825106.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII
345-E]
gi|313120070|gb|EFR43249.1| RNA methyltransferase, TrmH family [Dialister microaerophilus UPII
345-E]
Length = 261
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 98/192 (51%), Gaps = 27/192 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS +N ++K +LR YR + ++ G + E +++ + + C + +
Sbjct: 4 ITSLNNKWIKTVSQLRLKK-YRDKNNLFIMEGIRLVEE------AVKLKYSEVVCFIS-E 55
Query: 142 KVEVPEGLDNISTH-------TVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
V E + N+ + + VS VM KLSG + ++ I AI + I++
Sbjct: 56 NVTEKERIQNLIKNGNLLKWKILFVSEKVMNKLSGTKHTQGIVAIVKKR------CINLG 109
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ + + R + LD +QDPGN+GT++RTA A V L GC DP+SEKA+R+
Sbjct: 110 TLK------YKNNERYVFLDEVQDPGNVGTIIRTAAATGMDAVILSKGCADPYSEKAIRS 163
Query: 255 SRGACFQLPIVS 266
S G+ F++P+V+
Sbjct: 164 SMGSIFRIPVVT 175
>gi|228960830|ref|ZP_04122465.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229048269|ref|ZP_04193837.1| RNA methyltransferase, TrmH [Bacillus cereus AH676]
gi|229112026|ref|ZP_04241569.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15]
gi|229129845|ref|ZP_04258811.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4]
gi|229147120|ref|ZP_04275479.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24]
gi|423584911|ref|ZP_17560998.1| hypothetical protein IIE_00323 [Bacillus cereus VD045]
gi|423631277|ref|ZP_17607024.1| hypothetical protein IK5_04127 [Bacillus cereus VD154]
gi|423650459|ref|ZP_17626029.1| hypothetical protein IKA_04246 [Bacillus cereus VD169]
gi|423657504|ref|ZP_17632803.1| hypothetical protein IKG_04492 [Bacillus cereus VD200]
gi|228636369|gb|EEK92840.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST24]
gi|228653536|gb|EEL09408.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-Cer4]
gi|228671349|gb|EEL26650.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-15]
gi|228722994|gb|EEL74371.1| RNA methyltransferase, TrmH [Bacillus cereus AH676]
gi|228798852|gb|EEM45831.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401235103|gb|EJR41576.1| hypothetical protein IIE_00323 [Bacillus cereus VD045]
gi|401263850|gb|EJR69966.1| hypothetical protein IK5_04127 [Bacillus cereus VD154]
gi|401281618|gb|EJR87524.1| hypothetical protein IKA_04246 [Bacillus cereus VD169]
gi|401289060|gb|EJR94781.1| hypothetical protein IKG_04492 [Bacillus cereus VD200]
Length = 265
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +T + L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEEAL--------KTGIVTELI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|225024569|ref|ZP_03713761.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC
23834]
gi|224942720|gb|EEG23929.1| hypothetical protein EIKCOROL_01444 [Eikenella corrodens ATCC
23834]
Length = 258
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 26/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+ I S NP +KH KL +S+ R G A++ G ++ + LQ + +
Sbjct: 1 MNTIESAQNPTLKHLAKLLRSARARRESGQAVLEG------VHLLSAYLQAGGQVLQVYV 54
Query: 139 LLDKVEVPEGLDNIST----HTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
K++ PE +S V+ + ++K++ + +E I A+ + PT F
Sbjct: 55 PASKMQQPETARLLSQLSPERVVQTAGAALQKITSLSDAEEITALIALP-PTEPFD---- 109
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
EADC +VL+ IQDPGN+GT+LR+A A G V L C D +S K LRA
Sbjct: 110 -AEADC----------VVLERIQDPGNIGTILRSAAAAGVGQVVLSADCADAWSPKVLRA 158
Query: 255 SRGACFQL 262
GA F L
Sbjct: 159 GMGAHFAL 166
>gi|49478690|ref|YP_038610.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49330246|gb|AAT60892.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 254
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 1 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V V++K L ++++ + A+ K + V D
Sbjct: 52 VSDQTDLPKDWTVNDVEMYIVPEVIVKVLRETETTQGVFAVC-EKHESEVALTD------ 104
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 105 ---------GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGS 155
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 156 IFHLPIVKGN 165
>gi|27467748|ref|NP_764385.1| rRNA methylase [Staphylococcus epidermidis ATCC 12228]
gi|418609900|ref|ZP_13173034.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU065]
gi|418629003|ref|ZP_13191519.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU127]
gi|420169701|ref|ZP_14676279.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM070]
gi|420210600|ref|ZP_14716023.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM003]
gi|27315292|gb|AAO04427.1|AE016746_217 rRNA methylase [Staphylococcus epidermidis ATCC 12228]
gi|374406236|gb|EHQ77139.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU065]
gi|374834997|gb|EHR98628.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU127]
gi|394243001|gb|EJD88375.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM070]
gi|394276051|gb|EJE20407.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM003]
Length = 246
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ KL++ R G ALV G I E Y + + + L
Sbjct: 1 MEQITSAQNSKIKNANKLKKKRE-RDKTGLALVEGIHLIEEAY-------QSQIEVIQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++D + + + + +++ V + LSG + + A++K PT ++
Sbjct: 53 IVDTDRMSSSIIDYAKEVYQINLKVAEALSGTVTPQGF--FAIIKKPTYDKTL------- 103
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++L++D IQDPGNLGTL+RTA A + + G DPF +K +RAS+G+
Sbjct: 104 --------AKQVLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGS 155
Query: 259 CFQLPIV 265
F +P++
Sbjct: 156 IFHIPVI 162
>gi|408356325|ref|YP_006844856.1| RNA methyltransferase [Amphibacillus xylanus NBRC 15112]
gi|407727096|dbj|BAM47094.1| putative RNA methyltransferase [Amphibacillus xylanus NBRC 15112]
Length = 246
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 89/187 (47%), Gaps = 27/187 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N +K+ KL+Q YR G +V G + E + ++ +++
Sbjct: 2 ITSVKNQQIKNWAKLKQKK-YRKEQGCFIVEGEHLVEEAL-------KSEWEVETIVVES 53
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
E L NI TV S V L+ +S + I AI +K S + N
Sbjct: 54 TFEASIDLTNIQVETV--SDHVFAHLAQTKSPQGILAIVKIK---STHDYEKN------- 101
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
R+L+LD +QDPGNLGT++RTA A + + L G D +++K +RAS+G+ F
Sbjct: 102 -------RLLLLDAVQDPGNLGTMIRTADAAGFDAIILGDGTVDLYNDKVIRASQGSIFH 154
Query: 262 LPIVSGS 268
+PI+ S
Sbjct: 155 IPIIESS 161
>gi|393724800|ref|ZP_10344727.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas sp. PAMC 26605]
Length = 267
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 90/193 (46%), Gaps = 19/193 (9%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL-- 137
+ IT+ SNP +K LR+ +R G L G + E R D
Sbjct: 3 REITAYSNPLIKRIRSLREKR-HRREEGLFLAEGLRILTEAREAGRIPDYLFFARDSAAH 61
Query: 138 -LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
L+L VE E + TV ++ KLSG + +++ + + ++ S+D
Sbjct: 62 PLVLALVEAVEAAGGEAIETV---PDILSKLSGKDNPQAVVGV-FAEFARALDSLD---- 113
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ W LV + ++DPGNLGT+LRT A GG+ L+ C DPFS +A+RAS
Sbjct: 114 RSSAAIW-------LVAERMRDPGNLGTILRTGDAVGAGGLILIGECVDPFSVEAVRASM 166
Query: 257 GACFQLPIVSGSW 269
GA F +P+V W
Sbjct: 167 GALFTVPVVQCEW 179
>gi|373487990|ref|ZP_09578656.1| tRNA/rRNA methyltransferase (SpoU) [Holophaga foetida DSM 6591]
gi|372007764|gb|EHP08393.1| tRNA/rRNA methyltransferase (SpoU) [Holophaga foetida DSM 6591]
Length = 255
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 88/201 (43%), Gaps = 28/201 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS +NP KH + +S R +H L++G I S +R + LD
Sbjct: 5 ITSKANPRFKHLRSILAASGGRRTH--TLLLGAKLIEAWEGVRNSPAGTRIRPLQWIRLD 62
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIA-LMKIPTSVFSIDVNQKEADC 200
T+ ++ +M++L+ S + +A L PT
Sbjct: 63 GAGEHPLERRHPLDTLTLAEPLMRELADAGSPPDLALLAELGPEPTG------------- 109
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
P R++ GIQDPGNLG +LR+A AF + L PGC DPF+ KALR S GA F
Sbjct: 110 ----PLADRVIGAWGIQDPGNLGAILRSAAAFGFQEALLGPGCTDPFAPKALRGSMGAAF 165
Query: 261 QLPIV--------SGSWYHLE 273
+P+ SG W+ L+
Sbjct: 166 LMPLRRMEALSLDSGKWFALD 186
>gi|239827986|ref|YP_002950610.1| tRNA/rRNA methyltransferase SpoU [Geobacillus sp. WCH70]
gi|239808279|gb|ACS25344.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. WCH70]
Length = 254
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 25/191 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I ST NP VK KL + G L+ G + E + L E L+
Sbjct: 1 MKRIQSTKNPQVKEWKKLLTKKG-QEKMGLFLIEGFHLVEEALKSHAPLVE-------LI 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI-DVNQKE 197
+ +K E+P + V+ VMK +S ++ + I A+ FS D++ +
Sbjct: 53 VDEKKEIPPSWNAGHLPVTIVTEEVMKAISDTETPQGIAAVC------EQFSYGDIDWTQ 106
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
A+ +L++D +QDPGN+GT++RTA A V L GC D ++ K +RA++G
Sbjct: 107 AN----------VLLIDAVQDPGNIGTMIRTADAAGIDAVILGEGCADLYNPKVIRATQG 156
Query: 258 ACFQLPIVSGS 268
+ F LPI+ G+
Sbjct: 157 SLFHLPIIRGN 167
>gi|30022637|ref|NP_834268.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
gi|296505037|ref|YP_003666737.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
gi|29898195|gb|AAP11469.1| 23S rRNA methyltransferase [Bacillus cereus ATCC 14579]
gi|296326089|gb|ADH09017.1| 23S rRNA methyltransferase [Bacillus thuringiensis BMB171]
Length = 254
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +T + L+
Sbjct: 1 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEEAL--------KTGIVTELI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 52 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 101 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 155
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 156 IFHLPIVKGN 165
>gi|251810585|ref|ZP_04825058.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876415|ref|ZP_06285282.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
SK135]
gi|293366881|ref|ZP_06613557.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417645965|ref|ZP_12295850.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU144]
gi|417656577|ref|ZP_12306260.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU028]
gi|417660132|ref|ZP_12309723.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU045]
gi|417909857|ref|ZP_12553590.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU037]
gi|417913373|ref|ZP_12557040.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU109]
gi|418603457|ref|ZP_13166842.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU041]
gi|418624900|ref|ZP_13187560.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU125]
gi|418663786|ref|ZP_13225294.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU081]
gi|419768607|ref|ZP_14294723.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-250]
gi|419772632|ref|ZP_14298663.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-K]
gi|420172844|ref|ZP_14679342.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM067]
gi|420202131|ref|ZP_14707726.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM018]
gi|420206526|ref|ZP_14712036.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM008]
gi|420219534|ref|ZP_14724550.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH04008]
gi|420222055|ref|ZP_14726980.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH08001]
gi|420224917|ref|ZP_14729755.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH06004]
gi|420226946|ref|ZP_14731719.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH05003]
gi|420229266|ref|ZP_14733972.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH04003]
gi|420231630|ref|ZP_14736275.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH051668]
gi|421607345|ref|ZP_16048591.1| rRNA methylase [Staphylococcus epidermidis AU12-03]
gi|251805745|gb|EES58402.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295440|gb|EFA87967.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
SK135]
gi|291319182|gb|EFE59552.1| TrmH family RNA methyltransferase [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329729977|gb|EGG66368.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU144]
gi|329734456|gb|EGG70769.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU045]
gi|329736238|gb|EGG72510.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU028]
gi|341652466|gb|EGS76254.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU037]
gi|341655655|gb|EGS79379.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU109]
gi|374407626|gb|EHQ78479.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU041]
gi|374411205|gb|EHQ81923.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU081]
gi|374826165|gb|EHR90073.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU125]
gi|383359259|gb|EID36689.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-K]
gi|383359433|gb|EID36856.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-250]
gi|394241521|gb|EJD86935.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM067]
gi|394270104|gb|EJE14627.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM018]
gi|394278365|gb|EJE22682.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM008]
gi|394288959|gb|EJE32856.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH04008]
gi|394290086|gb|EJE33956.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH08001]
gi|394294320|gb|EJE38006.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH06004]
gi|394297447|gb|EJE41044.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH05003]
gi|394299032|gb|EJE42583.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH04003]
gi|394302172|gb|EJE45620.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH051668]
gi|406657137|gb|EKC83530.1| rRNA methylase [Staphylococcus epidermidis AU12-03]
Length = 246
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ KL++ R G ALV G I E Y + + + L
Sbjct: 1 MEQITSAQNSKIKNANKLKKKRE-RDKTGLALVEGIHLIEEAY-------QSQIEVIQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++D + + + + +++ V + LSG + + A++K PT ++
Sbjct: 53 IVDTDRMSSSIIDYAKEVYQINLKVAEALSGTVTPQGF--FAIIKKPTYDKTL------- 103
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++L++D IQDPGNLGTL+RTA A + + G DPF +K +RAS+G+
Sbjct: 104 --------AKQVLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGS 155
Query: 259 CFQLPIV 265
F +P++
Sbjct: 156 IFHIPVI 162
>gi|385324158|ref|YP_005878597.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA
Gm2251 2'-O-methyltransferase) [Neisseria meningitidis
8013]
gi|261392545|emb|CAX50100.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA
Gm2251 2'-O-methyltransferase) [Neisseria meningitidis
8013]
Length = 261
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVR 133
+K+I+ST+N ++H +L +R + ++ G ++ R + E +
Sbjct: 1 MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEGKMP 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ + L V VPEG VS ++KK+S + ++ + +AL+ IP +
Sbjct: 61 SEEVRRLRAV-VPEG------KVFSVSDGILKKISSLTCADDV--LALIDIPDA------ 105
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
P+ +VLDG+QDPGN+GT+LR+A A G V L GC D +S K LR
Sbjct: 106 --------GALPAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAWSPKVLR 157
Query: 254 ASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGV 311
A GA F L I S + LE+ ++ ++ A E +QV+ ++L + A V
Sbjct: 158 AGMGAHFLLDIYSQA--DLEIWLASYKGRVFATAL---REEKQVVLYGEDLCEPTAWV 210
>gi|52140943|ref|YP_085884.1| 23S rRNA methyltransferase [Bacillus cereus E33L]
gi|51974412|gb|AAU15962.1| 23S rRNA methyltransferase [Bacillus cereus E33L]
Length = 254
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 1 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 52 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 101 ALAD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGS 155
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 156 IFHLPIVKGN 165
>gi|229152759|ref|ZP_04280942.1| RNA methyltransferase, TrmH [Bacillus cereus m1550]
gi|228630579|gb|EEK87225.1| RNA methyltransferase, TrmH [Bacillus cereus m1550]
Length = 265
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +T + L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEEAL--------KTGIVTELI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + +KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKREKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|374320279|ref|YP_005073408.1| tRNA/rRNA methyltransferase (spou) [Paenibacillus terrae HPL-003]
gi|357199288|gb|AET57185.1| tRNA/rRNA methyltransferase (spou) [Paenibacillus terrae HPL-003]
Length = 262
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 9/95 (9%)
Query: 183 KIPTSVFSIDVNQKEADCRSWFPSIHR-----ILVLDGIQDPGNLGTLLRTAMAFKWGGV 237
K P SVF+I V ++E R FP++ ++VLDG+QDPGN+GT++R+A A GV
Sbjct: 89 KTPQSVFAI-VRKEE---RGAFPALLEQPDALVMVLDGVQDPGNVGTIIRSADAAGAAGV 144
Query: 238 FLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHL 272
L GC D ++ K +R++ G+ F LP++ GS L
Sbjct: 145 ILGHGCADLYNPKTIRSTMGSLFHLPVIEGSLEEL 179
>gi|196044916|ref|ZP_03112150.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108]
gi|229186815|ref|ZP_04313970.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1]
gi|376268486|ref|YP_005121198.1| TrmH family RNA methyltransferase [Bacillus cereus F837/76]
gi|196024404|gb|EDX63077.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB108]
gi|228596552|gb|EEK54217.1| RNA methyltransferase, TrmH [Bacillus cereus BGSC 6E1]
gi|364514286|gb|AEW57685.1| RNA methyltransferase, TrmH family [Bacillus cereus F837/76]
Length = 265
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSIQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|423615052|ref|ZP_17590886.1| hypothetical protein IIO_00378 [Bacillus cereus VD115]
gi|401261908|gb|EJR68059.1| hypothetical protein IIO_00378 [Bacillus cereus VD115]
Length = 265
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKQGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|423521554|ref|ZP_17498027.1| hypothetical protein IGC_00937 [Bacillus cereus HuA4-10]
gi|401177756|gb|EJQ84943.1| hypothetical protein IGC_00937 [Bacillus cereus HuA4-10]
Length = 265
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R + G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDTKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|423452157|ref|ZP_17429010.1| hypothetical protein IEE_00901 [Bacillus cereus BAG5X1-1]
gi|423470763|ref|ZP_17447507.1| hypothetical protein IEM_02069 [Bacillus cereus BAG6O-2]
gi|401142228|gb|EJQ49777.1| hypothetical protein IEE_00901 [Bacillus cereus BAG5X1-1]
gi|402434501|gb|EJV66539.1| hypothetical protein IEM_02069 [Bacillus cereus BAG6O-2]
Length = 265
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R + G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDNKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|218234920|ref|YP_002369360.1| TrmH family RNA methyltransferase [Bacillus cereus B4264]
gi|218162877|gb|ACK62869.1| RNA methyltransferase, TrmH family [Bacillus cereus B4264]
Length = 265
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 90/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +T + L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEEAL--------KTGIVTELI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + +KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKREKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|420210963|ref|ZP_14716352.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM001]
gi|394282900|gb|EJE27082.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM001]
Length = 246
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 92/187 (49%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ KL++ R G ALV G I E Y + + + L
Sbjct: 1 MEQITSAQNSKIKNANKLKKKRE-RDKTGLALVEGIHLIEEAY-------QSQIEVIQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++D + + + + +++ V + LSG + + A++K PT ++
Sbjct: 53 IVDPDRMSSSIIDYAKEVYQINLKVAEALSGTVTPQGF--FAIIKKPTYDKTL------- 103
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++L++D IQDPGNLGTL+RTA A + + G DPF +K +RAS+G+
Sbjct: 104 --------AKQVLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGS 155
Query: 259 CFQLPIV 265
F +P++
Sbjct: 156 IFHIPVI 162
>gi|227501361|ref|ZP_03931410.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
gi|227216460|gb|EEI81870.1| possible rRNA methyltransferase [Anaerococcus tetradius ATCC 35098]
Length = 246
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 206 SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
S +R+L+LD I DPGN+GT++R+A AF + + L GC D ++EK+LRAS G+ F+L +V
Sbjct: 97 SSNRVLLLDHINDPGNMGTMIRSAEAFGFNDIILTEGCVDIYNEKSLRASMGSVFRLKLV 156
Query: 266 SGSWYHLEVLKDEFQMKLLAGHAGG 290
S + LK + K LA H G
Sbjct: 157 KLSNDEIVNLKSRY--KFLASHMEG 179
>gi|225866536|ref|YP_002751914.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102]
gi|225786909|gb|ACO27126.1| RNA methyltransferase, TrmH family [Bacillus cereus 03BB102]
Length = 254
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 1 MKNIDSIQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 52 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 101 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGS 155
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 156 IFHLPIVKGN 165
>gi|385781364|ref|YP_005757535.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus 11819-97]
gi|418316579|ref|ZP_12928016.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21340]
gi|418574574|ref|ZP_13138741.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21333]
gi|421150709|ref|ZP_15610363.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443640484|ref|ZP_21124473.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21196]
gi|364522353|gb|AEW65103.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus 11819-97]
gi|365240858|gb|EHM81617.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21340]
gi|371978705|gb|EHO95946.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21333]
gi|394329197|gb|EJE55312.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443405165|gb|ELS63775.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21196]
Length = 246
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ V + + + + ++ V + LSG + P F+I + +
Sbjct: 53 AIEPVRLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPHY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|229062245|ref|ZP_04199567.1| RNA methyltransferase, TrmH [Bacillus cereus AH603]
gi|228717073|gb|EEL68752.1| RNA methyltransferase, TrmH [Bacillus cereus AH603]
Length = 265
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R + G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDTKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|418644672|ref|ZP_13206812.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-55]
gi|375025075|gb|EHS18485.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-55]
Length = 246
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ V + + + + ++ V + LSG + P F+I + +
Sbjct: 53 AIEPVRLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPHY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|416839774|ref|ZP_11903132.1| rRNA methyltransferase [Staphylococcus aureus O11]
gi|416847329|ref|ZP_11907063.1| rRNA methyltransferase [Staphylococcus aureus O46]
gi|417904123|ref|ZP_12547953.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21269]
gi|323440686|gb|EGA98396.1| rRNA methyltransferase [Staphylococcus aureus O11]
gi|323442371|gb|EGB00001.1| rRNA methyltransferase [Staphylococcus aureus O46]
gi|341847946|gb|EGS89115.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21269]
Length = 246
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LPI++
Sbjct: 156 VFHLPIMT 163
>gi|229019786|ref|ZP_04176589.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273]
gi|229026013|ref|ZP_04182397.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272]
gi|228735294|gb|EEL85905.1| RNA methyltransferase, TrmH [Bacillus cereus AH1272]
gi|228741511|gb|EEL91708.1| RNA methyltransferase, TrmH [Bacillus cereus AH1273]
Length = 265
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F+LPIV G+
Sbjct: 167 IFRLPIVKGN 176
>gi|206977720|ref|ZP_03238611.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97]
gi|229141289|ref|ZP_04269827.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26]
gi|229198712|ref|ZP_04325410.1| RNA methyltransferase, TrmH [Bacillus cereus m1293]
gi|423355045|ref|ZP_17332670.1| hypothetical protein IAU_03119 [Bacillus cereus IS075]
gi|423373487|ref|ZP_17350826.1| hypothetical protein IC5_02542 [Bacillus cereus AND1407]
gi|423570791|ref|ZP_17547036.1| hypothetical protein II7_04012 [Bacillus cereus MSX-A12]
gi|423573760|ref|ZP_17549879.1| hypothetical protein II9_00981 [Bacillus cereus MSX-D12]
gi|423603759|ref|ZP_17579652.1| hypothetical protein IIK_00340 [Bacillus cereus VD102]
gi|206744021|gb|EDZ55437.1| RNA methyltransferase, TrmH family [Bacillus cereus H3081.97]
gi|228584734|gb|EEK42854.1| RNA methyltransferase, TrmH [Bacillus cereus m1293]
gi|228642070|gb|EEK98363.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST26]
gi|401085222|gb|EJP93465.1| hypothetical protein IAU_03119 [Bacillus cereus IS075]
gi|401096451|gb|EJQ04498.1| hypothetical protein IC5_02542 [Bacillus cereus AND1407]
gi|401203418|gb|EJR10257.1| hypothetical protein II7_04012 [Bacillus cereus MSX-A12]
gi|401213859|gb|EJR20596.1| hypothetical protein II9_00981 [Bacillus cereus MSX-D12]
gi|401246523|gb|EJR52870.1| hypothetical protein IIK_00340 [Bacillus cereus VD102]
Length = 265
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALAD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|159901149|ref|YP_001547396.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus DSM
785]
gi|159894188|gb|ABX07268.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus DSM
785]
Length = 262
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 91/198 (45%), Gaps = 42/198 (21%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITST+N VK+ L +S RHS +V G + E NF LLL
Sbjct: 6 ITSTANHHVKYLRSLLRSRKDRHSERRFVVEGVRLVGEALNFATP---------SLLLY- 55
Query: 142 KVEVPEGL----------DNIST--HTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVF 189
VPE L D I+ + + ++ LS V++ + I A+ IP F
Sbjct: 56 ---VPEQLASTERGQQLLDLIAQLPNAFATTPAILAGLSDVETPQGIIAV----IPMPQF 108
Query: 190 SIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
+ S IL+LDG+QDPGN+GTLLR+A A G V LPG D +S
Sbjct: 109 TSQ-------------SASLILMLDGVQDPGNVGTLLRSAEAAGVGQVLCLPGTADVWSP 155
Query: 250 KALRASRGACFQLPIVSG 267
K +R+ G F+LPIV G
Sbjct: 156 KVVRSGMGVHFRLPIVDG 173
>gi|75761064|ref|ZP_00741063.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74491448|gb|EAO54665.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 202
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGIVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F+LPIV G+
Sbjct: 167 IFRLPIVKGN 176
>gi|258423820|ref|ZP_05686706.1| SpoU rRNA methylase [Staphylococcus aureus A9635]
gi|417891935|ref|ZP_12535992.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21200]
gi|418308171|ref|ZP_12919822.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21194]
gi|257846052|gb|EEV70080.1| SpoU rRNA methylase [Staphylococcus aureus A9635]
gi|341851221|gb|EGS92150.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21200]
gi|365241261|gb|EHM82009.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21194]
Length = 246
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSEIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|229076064|ref|ZP_04209032.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18]
gi|228706927|gb|EEL59132.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-18]
Length = 265
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|118479709|ref|YP_896860.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
gi|118418934|gb|ABK87353.1| 23S rRNA methyltransferase [Bacillus thuringiensis str. Al Hakam]
Length = 265
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALAD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|418888928|ref|ZP_13443064.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1524]
gi|377754438|gb|EHT78347.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1524]
Length = 246
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSEIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|418616528|ref|ZP_13179452.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU120]
gi|420182824|ref|ZP_14688957.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM049]
gi|420194107|ref|ZP_14699936.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM021]
gi|420214365|ref|ZP_14719644.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH05005]
gi|420217157|ref|ZP_14722341.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH05001]
gi|374820606|gb|EHR84682.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU120]
gi|394249287|gb|EJD94500.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM049]
gi|394266805|gb|EJE11430.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM021]
gi|394283730|gb|EJE27895.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH05005]
gi|394290513|gb|EJE34368.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIH05001]
Length = 246
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNSKIKNANKLKKKRE-RDKTGLALIEGIHLIEEAY-------QSQIEVIQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++D + + + + +++ V + LSG + + A++K PT ++
Sbjct: 53 IVDSDRMSSSIIDYAKEVYQINLKVAEALSGTVTPQGF--FAIIKKPTYDKTL------- 103
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++L++D IQDPGNLGTL+RTA A + + G DPF +K +RAS+G+
Sbjct: 104 --------AKQVLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGS 155
Query: 259 CFQLPIV 265
F +P++
Sbjct: 156 IFHIPVI 162
>gi|228967659|ref|ZP_04128680.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228792035|gb|EEM39616.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar sotto
str. T04001]
Length = 265
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGIVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F+LPIV G+
Sbjct: 167 IFRLPIVKGN 176
>gi|83319453|ref|YP_424436.1| RNA methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC
27343]
gi|83283339|gb|ABC01271.1| RNA methyltransferase, TrmH family [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
Length = 255
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 28/187 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYN--FNRSLQERTVRMDCLLL 139
I+S SNP +K LKL+ +R+ +V G I E YN ++L + ++ L
Sbjct: 4 ISSVSNPKIKEILKLK-DRKHRNKQKLFIVEGFHMIMEAYNDQIIKTLLGTSKALEVL-- 60
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
K E+P NI + +S V KK+S +S+ I AI M T + D
Sbjct: 61 --KDEIP----NIE-QVIEISENVAKKISDTVTSQQIFAICSMPENTKI----------D 103
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
+ IL+LD IQDPGNLGTL+R+A +F + V P + ++K LR+++G
Sbjct: 104 FE------NNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGNL 157
Query: 260 FQLPIVS 266
FQ+ +V+
Sbjct: 158 FQVNLVN 164
>gi|42561043|ref|NP_975494.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|42492540|emb|CAE77136.1| rRNA methylase [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|301320852|gb|ADK69495.1| RNA methyltransferase, TrmH family [Mycoplasma mycoides subsp.
mycoides SC str. Gladysdale]
Length = 255
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 28/187 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYN--FNRSLQERTVRMDCLLL 139
I+S SNP +K LKL+ +R+ +V G I E YN ++L + ++ L
Sbjct: 4 ISSVSNPKIKEILKLK-DRKHRNKQKLFIVEGFHMIMEAYNDQIIKTLLGTSKTLEVL-- 60
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
K E+P NI + +S V KK+S +S+ I AI M T + D
Sbjct: 61 --KDEIP----NIE-QVIEISENVAKKISDTVTSQQIFAICSMPENTKI----------D 103
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
+ IL+LD IQDPGNLGTL+R+A +F + V P + ++K LR+++G
Sbjct: 104 FE------NNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGNL 157
Query: 260 FQLPIVS 266
FQ+ +V+
Sbjct: 158 FQVNLVN 164
>gi|384547375|ref|YP_005736628.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ED133]
gi|298694424|gb|ADI97646.1| rRNA methyltransferase [Staphylococcus aureus subsp. aureus ED133]
Length = 246
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LPI++
Sbjct: 156 VFHLPIMT 163
>gi|417895757|ref|ZP_12539735.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21235]
gi|341841434|gb|EGS82895.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21235]
Length = 246
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPARLNQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LPI++
Sbjct: 156 VFHLPIMT 163
>gi|229105189|ref|ZP_04235838.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28]
gi|228678115|gb|EEL32343.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-28]
Length = 265
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKQGLFFVEGFHLVEE------ALKAGIVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|218899716|ref|YP_002448127.1| TrmH family RNA methyltransferase [Bacillus cereus G9842]
gi|228903079|ref|ZP_04067216.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222]
gi|218543852|gb|ACK96246.1| RNA methyltransferase, TrmH family [Bacillus cereus G9842]
gi|228856565|gb|EEN01088.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 4222]
Length = 265
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGIVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F+LPIV G+
Sbjct: 167 IFRLPIVKGN 176
>gi|167040674|ref|YP_001663659.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X514]
gi|289578709|ref|YP_003477336.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter italicus Ab9]
gi|297544943|ref|YP_003677245.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|300914715|ref|ZP_07132031.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
gi|307724051|ref|YP_003903802.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter sp. X513]
gi|166854914|gb|ABY93323.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X514]
gi|289528422|gb|ADD02774.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter italicus
Ab9]
gi|296842718|gb|ADH61234.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|300889650|gb|EFK84796.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X561]
gi|307581112|gb|ADN54511.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter sp. X513]
Length = 254
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 23/185 (12%)
Query: 103 RHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSV 162
R+ G V GTT + E N + E V + + K+++P G I T RV
Sbjct: 23 RYEEGLFFVEGTTSVLEALKSNFEI-EYIVMGEGV----KIDIPTGNFKIVHTTERV--- 74
Query: 163 VMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNL 222
KK+S + + + +A++KIP + E D I+ ++ D IQDPGNL
Sbjct: 75 -FKKISDTVTPQMV--MAIIKIP---------KYEEDTYIKDKGIY--IIADNIQDPGNL 120
Query: 223 GTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMK 282
GT++RTA AF +F + C D F+ K LRAS G+ F +P++ + L LK +K
Sbjct: 121 GTIIRTADAFGASAIFTINNCVDVFNPKVLRASMGSIFHIPVIVTASQILLKLKQR-GIK 179
Query: 283 LLAGH 287
+ A H
Sbjct: 180 VFATH 184
>gi|301056070|ref|YP_003794281.1| 23S rRNA methyltransferase [Bacillus cereus biovar anthracis str.
CI]
gi|300378239|gb|ADK07143.1| 23S rRNA methyltransferase [Bacillus cereus biovar anthracis str.
CI]
Length = 254
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E+ + L+
Sbjct: 1 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEEVLKAGVVTE--------LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ K + V D
Sbjct: 52 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-EKHESEVALTD------ 104
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 105 ---------GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGS 155
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 156 IFHLPIVKGN 165
>gi|435854748|ref|YP_007316067.1| rRNA methylase [Halobacteroides halobius DSM 5150]
gi|433671159|gb|AGB41974.1| rRNA methylase [Halobacteroides halobius DSM 5150]
Length = 265
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 20/214 (9%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N +K+ L + YR + ++ G I E N + R + LL +
Sbjct: 3 ITSFKNEKIKYLRSLYKKK-YRRQNQQFVLEGIRIIEEALNEQADI--RQIFYSDYLLRN 59
Query: 142 K--VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+ E+ EGL ++++ +++K++ S + I AI V Q D
Sbjct: 60 QRGQELLEGLKQADNKVIKITDDLLQKVADTTSPQGILAI-------------VQQVNHD 106
Query: 200 CRSWFPSIHRILVL-DGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++ + ++ D IQDPGNLGT++RTA A GV G +++K LRA+ G+
Sbjct: 107 LNNFLAGNKELFIIADRIQDPGNLGTIIRTADAAGASGVITTKGTVSLYNQKVLRATMGS 166
Query: 259 CFQLPIV-SGSWYHLEVLKDEFQMKLLAGHAGGN 291
F+LP+ +G+ L E ++KL+ G GN
Sbjct: 167 LFRLPVYRAGNLKELRANLKENKIKLVVGDIKGN 200
>gi|418325057|ref|ZP_12936267.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU071]
gi|365228963|gb|EHM70135.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU071]
Length = 246
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNSKIKNANKLKKKRE-RDKTGLALIEGIHLIEEAY-------QSQIEVIQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++D + + + + +++ V + LSG + + A++K PT ++
Sbjct: 53 IVDPDRMSSSIIDYAKEVYQINLKVAEALSGTVTPQGF--FAIIKKPTYDKTL------- 103
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++L++D IQDPGNLGTL+RTA A + + G DPF +K +RAS+G+
Sbjct: 104 --------AKQVLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGS 155
Query: 259 CFQLPIV 265
F +P++
Sbjct: 156 IFHIPVI 162
>gi|404328580|ref|ZP_10969028.1| 23S rRNA methyltransferase [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 255
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 76/134 (56%), Gaps = 20/134 (14%)
Query: 134 MDCLLLLDKVEVPEG--LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI 191
+ +L+ + +PE LD++ + +V+ + +LS ++ + I A+ M P ++
Sbjct: 46 LSAVLIDEAFRLPEDWPLDDVEVY--QVTHKIFTELSQTETPQGIIAVCRMVQP----AV 99
Query: 192 DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
V+Q R L++DG+QDPGNLGTL+RTA AF VFL GC D ++ K
Sbjct: 100 TVHQG------------RYLLIDGVQDPGNLGTLIRTADAFGLDAVFLGEGCVDGYNGKT 147
Query: 252 LRASRGACFQLPIV 265
LR+++G+ F LP+V
Sbjct: 148 LRSAQGSHFHLPVV 161
>gi|423484127|ref|ZP_17460817.1| hypothetical protein IEQ_03905 [Bacillus cereus BAG6X1-2]
gi|401139153|gb|EJQ46716.1| hypothetical protein IEQ_03905 [Bacillus cereus BAG6X1-2]
Length = 265
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|423358351|ref|ZP_17335854.1| hypothetical protein IC1_00331 [Bacillus cereus VD022]
gi|401086038|gb|EJP94270.1| hypothetical protein IC1_00331 [Bacillus cereus VD022]
Length = 265
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGIVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F+LPIV G+
Sbjct: 167 IFRLPIVKGN 176
>gi|417901470|ref|ZP_12545346.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21266]
gi|341845309|gb|EGS86511.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21266]
Length = 246
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ V + + + + ++ V + LSG + P F+I + +
Sbjct: 53 AIELVRLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPHY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|331703507|ref|YP_004400194.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010]
gi|328802062|emb|CBW54216.1| rRNA methylase [Mycoplasma mycoides subsp. capri LC str. 95010]
Length = 255
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 28/187 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYN--FNRSLQERTVRMDCLLL 139
I+S SNP +K LKL+ +R+ +V G I E YN ++L + ++ L
Sbjct: 4 ISSVSNPKIKEILKLK-DRKHRNKQKLFIVEGFHMIMEAYNDQIIKTLLGTSKALEVL-- 60
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
K E+P NI + +S V KK+S +S+ I AI M T + D
Sbjct: 61 --KDEIP----NIE-QVIEISENVAKKISDTVTSQQIFAICSMPENTKI----------D 103
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
+ IL+LD IQDPGNLGTL+R+A +F + V P + ++K LR+++G
Sbjct: 104 FE------NNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGNL 157
Query: 260 FQLPIVS 266
FQ+ +V+
Sbjct: 158 FQVNLVN 164
>gi|313665349|ref|YP_004047220.1| TrmH family RNA methyltransferase [Mycoplasma leachii PG50]
gi|392388784|ref|YP_005907193.1| trmH family RNA methyltransferase [Mycoplasma leachii 99/014/6]
gi|312949359|gb|ADR23955.1| RNA methyltransferase, TrmH family [Mycoplasma leachii PG50]
gi|339276429|emb|CBV67008.1| RNA methyltransferase, TrmH family [Mycoplasma leachii 99/014/6]
Length = 255
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 28/187 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYN--FNRSLQERTVRMDCLLL 139
I+S SNP +K LKL+ +R+ +V G I E YN ++L + ++ L
Sbjct: 4 ISSVSNPKIKEILKLK-DRKHRNKQKLFIVEGFHMIMEAYNDQIIKTLLGTSKALEVL-- 60
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
K E+P NI + +S V KK+S +S+ I AI M T + D
Sbjct: 61 --KDEIP----NIE-QVIEISENVAKKISDTVTSQQIFAICSMPENTKI----------D 103
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
+ IL+LD IQDPGNLGTL+R+A +F + V P + ++K LR+++G
Sbjct: 104 FE------NNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGNL 157
Query: 260 FQLPIVS 266
FQ+ +V+
Sbjct: 158 FQVNLVN 164
>gi|423547849|ref|ZP_17524207.1| hypothetical protein IGO_04284 [Bacillus cereus HuB5-5]
gi|423622362|ref|ZP_17598140.1| hypothetical protein IK3_00960 [Bacillus cereus VD148]
gi|401178286|gb|EJQ85466.1| hypothetical protein IGO_04284 [Bacillus cereus HuB5-5]
gi|401261502|gb|EJR67662.1| hypothetical protein IK3_00960 [Bacillus cereus VD148]
Length = 265
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G
Sbjct: 167 IFHLPIVKGD 176
>gi|384182370|ref|YP_005568132.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324328454|gb|ADY23714.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 254
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 1 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 52 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 101 ALAD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 155
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 156 IFHLPIVKGN 165
>gi|256384063|gb|ACU78633.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
gi|256384895|gb|ACU79464.1| rRNA methylase [Mycoplasma mycoides subsp. capri str. GM12]
gi|296455884|gb|ADH22119.1| rRNA methylase [synthetic Mycoplasma mycoides JCVI-syn1.0]
Length = 255
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 94/187 (50%), Gaps = 28/187 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYN--FNRSLQERTVRMDCLLL 139
I+S SNP +K LKL+ +R+ +V G I E YN ++L + ++ L
Sbjct: 4 ISSVSNPKIKEILKLK-DRKHRNKQKLFIVEGFHMIMEAYNDQIIKTLLGTSKALEIL-- 60
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
K E+P NI + +S V KK+S +S+ I AI M T + D
Sbjct: 61 --KDEIP----NIE-QVIEISENVAKKISDTVTSQQIFAICSMPENTKI----------D 103
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
+ IL+LD IQDPGNLGTL+R+A +F + V P + ++K LR+++G
Sbjct: 104 FE------NNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSVNFHNQKVLRSTQGNL 157
Query: 260 FQLPIVS 266
FQ+ +V+
Sbjct: 158 FQVNLVN 164
>gi|217962043|ref|YP_002340613.1| TrmH family RNA methyltransferase [Bacillus cereus AH187]
gi|222098026|ref|YP_002532083.1| 23S rRNA methyltransferase [Bacillus cereus Q1]
gi|375286558|ref|YP_005106997.1| 23S rRNA methyltransferase [Bacillus cereus NC7401]
gi|217063206|gb|ACJ77456.1| RNA methyltransferase, TrmH family [Bacillus cereus AH187]
gi|221242084|gb|ACM14794.1| 23S rRNA methyltransferase [Bacillus cereus Q1]
gi|358355085|dbj|BAL20257.1| 23S rRNA methyltransferase [Bacillus cereus NC7401]
Length = 254
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 1 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 52 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 101 ALAD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 155
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 156 IFHLPIVKGN 165
>gi|320106654|ref|YP_004182244.1| tRNA/rRNA methyltransferase SpoU [Terriglobus saanensis SP1PR4]
gi|319925175|gb|ADV82250.1| tRNA/rRNA methyltransferase (SpoU) [Terriglobus saanensis SP1PR4]
Length = 264
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 25/214 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS +NP VK L+ + + G + G + E L+ VR D LL
Sbjct: 12 VTSKTNPRVKQ-LRAAFEGRRKLAEGQIAMEGPHLMAEALRSGMELKAIFVREDARELLS 70
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++++ E + + V S+V ++ES + IA + P + R
Sbjct: 71 QLDLAEENAVVLSREVFASAV---------ATESSQGIAALAYPP------------EAR 109
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
S LVL+ +QDPGNLGTL+R+A AF V LPG D +++KALRAS G+ F+
Sbjct: 110 MPKRSDGLFLVLERLQDPGNLGTLVRSAEAFGAAAVLCLPGTADVWNQKALRASAGSAFR 169
Query: 262 LPIVSGSWYHLEVLKDEFQMKLLAGHA--GGNEE 293
+P+++ L L++ M+ +A A GG E
Sbjct: 170 IPVIAVEIERLFALQNA-GMRFIAAVAREGGTPE 202
>gi|313893388|ref|ZP_07826960.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158
str. F0412]
gi|313442029|gb|EFR60449.1| RNA methyltransferase, TrmH family [Veillonella sp. oral taxon 158
str. F0412]
Length = 264
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 29/190 (15%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFN-------RSLQERTVRM 134
I S N +KH + L Q + R G +V G IR+I R + + +
Sbjct: 4 IQSKDNKTIKHIIALGQRKN-RQKSGEYIVEGIRSIRDIAAMGAVKTVVIRESKAQDKNV 62
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
LL LD + S HT V V K+ + + + AI V+
Sbjct: 63 LDLLTLDSAQ--------SAHTYIVQDPVFDKIDNTVNGQGVVAI-------------VS 101
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ + + S + LDG+QDPGNLGT++RTA+A G+FL+ G DPF++K +R+
Sbjct: 102 KPKHNIESVSIEDGLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVRS 161
Query: 255 SRGACFQLPI 264
+ A ++P+
Sbjct: 162 TMSALHKIPL 171
>gi|268686558|ref|ZP_06153420.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
gi|268626842|gb|EEZ59242.1| RNA methyltransferase [Neisseria gonorrhoeae SK-93-1035]
Length = 261
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 96/193 (49%), Gaps = 28/193 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVR 133
+K+I+ST+N ++H +L +R + ++ G ++ R + E +
Sbjct: 1 MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEAKMP 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ +L L V +PE D I + VS ++KK+S + ++ I + L+ IP +D
Sbjct: 61 SEEVLKLTAV-LPE--DGIFS----VSDGILKKISSLSCADDI--LTLIDIPLGGTLLD- 110
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
+ DC VLDG+QDPGN+GT+LR+A A G V L GC D +S K LR
Sbjct: 111 ---KGDCA----------VLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR 157
Query: 254 ASRGACFQLPIVS 266
A GA F L I S
Sbjct: 158 AGMGAHFLLDIYS 170
>gi|418576551|ref|ZP_13140685.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
KACC 16562]
gi|379324972|gb|EHY92116.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
KACC 16562]
Length = 246
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 25/185 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N +K+ KL++ R G AL+ G I E Y N +Q+ L ++D
Sbjct: 4 ITSAQNNKIKNANKLKKKRE-RDKTGLALIEGYHLIEEAYKSNIKIQQ-------LYVVD 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ + + + + ++ V + LSG + + A+ I ++ N K+
Sbjct: 56 ADRIQDDMISYAEEVFEINLKVAEVLSGTVTPQGFFAV----IEKPIYET-TNAKQ---- 106
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+L++D IQDPGNLGTL+RTA A + L G DP+ +K +RAS+G+ F
Sbjct: 107 --------VLLIDCIQDPGNLGTLIRTADAVGLDLIVLEKGTADPYQDKVMRASQGSVFH 158
Query: 262 LPIVS 266
+PI++
Sbjct: 159 IPILT 163
>gi|434377716|ref|YP_006612360.1| 23S rRNA methyltransferase [Bacillus thuringiensis HD-789]
gi|401876273|gb|AFQ28440.1| 23S rRNA methyltransferase [Bacillus thuringiensis HD-789]
Length = 254
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 1 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGIVTE--LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 52 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 101 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 155
Query: 259 CFQLPIVSGS 268
F+LPIV G+
Sbjct: 156 IFRLPIVKGN 165
>gi|402563924|ref|YP_006606648.1| 23S rRNA methyltransferase [Bacillus thuringiensis HD-771]
gi|401792576|gb|AFQ18615.1| 23S rRNA methyltransferase [Bacillus thuringiensis HD-771]
Length = 254
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 1 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGIVTE--LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 52 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 101 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 155
Query: 259 CFQLPIVSGS 268
F+LPIV G+
Sbjct: 156 IFRLPIVKGN 165
>gi|417910870|ref|ZP_12554586.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU105]
gi|418622122|ref|ZP_13184878.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU123]
gi|420165304|ref|ZP_14672008.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM088]
gi|420187640|ref|ZP_14693660.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM039]
gi|341655058|gb|EGS78794.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU105]
gi|374827497|gb|EHR91359.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU123]
gi|394236471|gb|EJD82005.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM088]
gi|394256082|gb|EJE01018.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM039]
Length = 246
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNSKIKNANKLKKKRE-RDKTGLALIEGIHLIEEAY-------QSQIEVIQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++D + + + + +++ V + LSG + + A++K PT ++
Sbjct: 53 IVDPDRMSSSIIDYAKEVYQINLKVAEALSGTVTPQGF--FAIIKKPTYDKTL------- 103
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++L++D IQDPGNLGTL+RTA A + + G DPF +K +RAS+G+
Sbjct: 104 --------AKQVLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGS 155
Query: 259 CFQLPIV 265
F +P++
Sbjct: 156 IFHIPVI 162
>gi|229099022|ref|ZP_04229956.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29]
gi|229118053|ref|ZP_04247412.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3]
gi|407707078|ref|YP_006830663.1| hypothetical protein MC28_3842 [Bacillus thuringiensis MC28]
gi|423377594|ref|ZP_17354878.1| hypothetical protein IC9_00947 [Bacillus cereus BAG1O-2]
gi|423440701|ref|ZP_17417607.1| hypothetical protein IEA_01031 [Bacillus cereus BAG4X2-1]
gi|423449129|ref|ZP_17426008.1| hypothetical protein IEC_03737 [Bacillus cereus BAG5O-1]
gi|423463766|ref|ZP_17440534.1| hypothetical protein IEK_00953 [Bacillus cereus BAG6O-1]
gi|423533118|ref|ZP_17509536.1| hypothetical protein IGI_00950 [Bacillus cereus HuB2-9]
gi|423541618|ref|ZP_17518009.1| hypothetical protein IGK_03710 [Bacillus cereus HuB4-10]
gi|228665276|gb|EEL20759.1| RNA methyltransferase, TrmH [Bacillus cereus Rock1-3]
gi|228684250|gb|EEL38194.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-29]
gi|401128578|gb|EJQ36267.1| hypothetical protein IEC_03737 [Bacillus cereus BAG5O-1]
gi|401171151|gb|EJQ78384.1| hypothetical protein IGK_03710 [Bacillus cereus HuB4-10]
gi|401638443|gb|EJS56193.1| hypothetical protein IC9_00947 [Bacillus cereus BAG1O-2]
gi|402418832|gb|EJV51121.1| hypothetical protein IEA_01031 [Bacillus cereus BAG4X2-1]
gi|402421310|gb|EJV53570.1| hypothetical protein IEK_00953 [Bacillus cereus BAG6O-1]
gi|402464351|gb|EJV96047.1| hypothetical protein IGI_00950 [Bacillus cereus HuB2-9]
gi|407384763|gb|AFU15264.1| RNA methyltransferase, TrmH [Bacillus thuringiensis MC28]
Length = 265
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|152976947|ref|YP_001376464.1| tRNA/rRNA methyltransferase SpoU [Bacillus cytotoxicus NVH 391-98]
gi|152025699|gb|ABS23469.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cytotoxicus NVH
391-98]
Length = 254
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 31/193 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDC-- 136
+KNI S NP VK KL Q+ R G V G L E ++ D
Sbjct: 1 MKNIDSVKNPRVKQWKKL-QTKKERDKKGLFFVEGF-----------HLVEEALKADIVT 48
Query: 137 -LLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
L++ D+ ++P+ V ++K L ++++ + A+ + +
Sbjct: 49 ELIVSDQTDLPKDWIVSDVEMYIVPEPIVKVLRETETTQGVFAVC-----------EKQE 97
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
KE + S + L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR++
Sbjct: 98 KEVEL-----SNGKFLLLDGLQDPGNLGTIIRTADAAGVHAVVLGEGCVDAYNSKVLRST 152
Query: 256 RGACFQLPIVSGS 268
+G+ F LP+V G+
Sbjct: 153 QGSIFHLPVVKGN 165
>gi|261418277|ref|YP_003251959.1| tRNA/rRNA methyltransferase SpoU [Geobacillus sp. Y412MC61]
gi|319767763|ref|YP_004133264.1| tRNA/rRNA methyltransferase SpoU [Geobacillus sp. Y412MC52]
gi|261374734|gb|ACX77477.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC61]
gi|317112629|gb|ADU95121.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y412MC52]
Length = 251
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 31/192 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VK KL R G L+ G + E N L E L+
Sbjct: 1 MKRIESPKNARVKQWKKLLTKKG-RDETGLFLLEGFHLVEEAIKSNAPLVE-------LI 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ ++ VP G + V+ VMK +S ++ + I A+
Sbjct: 53 VDERTAVPPGWNVTGVPVTIVTEAVMKAISSTETPQGIAAV------------------- 93
Query: 199 DCR---SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
CR + + L++D +QDPGNLGT++RTA A V L GC D ++ K +RA+
Sbjct: 94 -CRQLSTELEGVKTALLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRAT 152
Query: 256 RGACFQLPIVSG 267
+G+ F LP+V G
Sbjct: 153 QGSLFHLPVVKG 164
>gi|228923305|ref|ZP_04086593.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228836259|gb|EEM81612.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 265
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGIVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|206969532|ref|ZP_03230486.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134]
gi|228910385|ref|ZP_04074200.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200]
gi|228941740|ref|ZP_04104287.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228954830|ref|ZP_04116850.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228974664|ref|ZP_04135230.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981258|ref|ZP_04141558.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
gi|229072063|ref|ZP_04205272.1| RNA methyltransferase, TrmH [Bacillus cereus F65185]
gi|229081814|ref|ZP_04214306.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2]
gi|229180880|ref|ZP_04308215.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W]
gi|229192762|ref|ZP_04319720.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876]
gi|365158656|ref|ZP_09354848.1| hypothetical protein HMPREF1014_00311 [Bacillus sp. 7_6_55CFAA_CT2]
gi|410676958|ref|YP_006929329.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
gi|423386056|ref|ZP_17363312.1| hypothetical protein ICE_03802 [Bacillus cereus BAG1X1-2]
gi|423411653|ref|ZP_17388773.1| hypothetical protein IE1_00957 [Bacillus cereus BAG3O-2]
gi|423426687|ref|ZP_17403718.1| hypothetical protein IE5_04376 [Bacillus cereus BAG3X2-2]
gi|423432560|ref|ZP_17409564.1| hypothetical protein IE7_04376 [Bacillus cereus BAG4O-1]
gi|423502763|ref|ZP_17479355.1| hypothetical protein IG1_00329 [Bacillus cereus HD73]
gi|423527588|ref|ZP_17504033.1| hypothetical protein IGE_01140 [Bacillus cereus HuB1-1]
gi|423582774|ref|ZP_17558885.1| hypothetical protein IIA_04289 [Bacillus cereus VD014]
gi|423634558|ref|ZP_17610211.1| hypothetical protein IK7_00967 [Bacillus cereus VD156]
gi|449091514|ref|YP_007423955.1| RNA methyltransferase, TrmH family [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|452201031|ref|YP_007481112.1| rRNA methylase [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
gi|206735220|gb|EDZ52388.1| RNA methyltransferase, TrmH family [Bacillus cereus AH1134]
gi|228590601|gb|EEK48462.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 10876]
gi|228602437|gb|EEK59923.1| RNA methyltransferase, TrmH [Bacillus cereus 172560W]
gi|228701402|gb|EEL53896.1| RNA methyltransferase, TrmH [Bacillus cereus Rock4-2]
gi|228710997|gb|EEL62963.1| RNA methyltransferase, TrmH [Bacillus cereus F65185]
gi|228778458|gb|EEM26725.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
gi|228785067|gb|EEM33080.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228804819|gb|EEM51418.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228817952|gb|EEM64030.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228849151|gb|EEM93990.1| RNA methyltransferase, TrmH [Bacillus thuringiensis IBL 200]
gi|363626529|gb|EHL77512.1| hypothetical protein HMPREF1014_00311 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401104978|gb|EJQ12946.1| hypothetical protein IE1_00957 [Bacillus cereus BAG3O-2]
gi|401110253|gb|EJQ18162.1| hypothetical protein IE5_04376 [Bacillus cereus BAG3X2-2]
gi|401115693|gb|EJQ23540.1| hypothetical protein IE7_04376 [Bacillus cereus BAG4O-1]
gi|401211589|gb|EJR18336.1| hypothetical protein IIA_04289 [Bacillus cereus VD014]
gi|401280537|gb|EJR86457.1| hypothetical protein IK7_00967 [Bacillus cereus VD156]
gi|401634707|gb|EJS52470.1| hypothetical protein ICE_03802 [Bacillus cereus BAG1X1-2]
gi|402452957|gb|EJV84767.1| hypothetical protein IGE_01140 [Bacillus cereus HuB1-1]
gi|402460002|gb|EJV91730.1| hypothetical protein IG1_00329 [Bacillus cereus HD73]
gi|409176087|gb|AFV20392.1| RNA methyltransferase, TrmH [Bacillus thuringiensis Bt407]
gi|449025271|gb|AGE80434.1| RNA methyltransferase, TrmH family [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|452106424|gb|AGG03364.1| rRNA methylase [Bacillus thuringiensis serovar thuringiensis str.
IS5056]
Length = 265
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGIVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|402555316|ref|YP_006596587.1| 23S rRNA methyltransferase [Bacillus cereus FRI-35]
gi|401796526|gb|AFQ10385.1| 23S rRNA methyltransferase [Bacillus cereus FRI-35]
Length = 254
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E + L+
Sbjct: 1 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEEALKVGVVTE--------LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 52 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 101 ALAD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 155
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 156 IFHLPIVKGN 165
>gi|423612737|ref|ZP_17588598.1| hypothetical protein IIM_03452 [Bacillus cereus VD107]
gi|401244725|gb|EJR51084.1| hypothetical protein IIM_03452 [Bacillus cereus VD107]
Length = 265
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + +KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKQEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|319938132|ref|ZP_08012530.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
gi|319806653|gb|EFW03302.1| tRNA/rRNA methyltransferase [Coprobacillus sp. 29_1]
Length = 240
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 85/188 (45%), Gaps = 41/188 (21%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N +K +KL+Q YR L+ G I E + LQ T D
Sbjct: 2 ITSLQNETIKEIVKLKQKK-YRDEKKMFLIEGFHLIEEARKKHSILQIITTLSD------ 54
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ T+ VS VM KL+ +S + I AI CR
Sbjct: 55 ---------DFEEETLHVSQNVMNKLAFTRSPQPIMAI--------------------CR 85
Query: 202 SWFPSI-----HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
S+ R L+LD +QDPGN+GT++RTA+AF + + + C D +++K +RA++
Sbjct: 86 QNNHSLIVEDGQRYLLLDRVQDPGNVGTMMRTALAFGYDQMIMSEDCVDLYNDKVIRATQ 145
Query: 257 GACFQLPI 264
GA FQ+ +
Sbjct: 146 GALFQMNV 153
>gi|423557858|ref|ZP_17534160.1| hypothetical protein II3_03062 [Bacillus cereus MC67]
gi|401192395|gb|EJQ99411.1| hypothetical protein II3_03062 [Bacillus cereus MC67]
Length = 265
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 93/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R + G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDNKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LP+V G+
Sbjct: 167 IFHLPVVKGN 176
>gi|418283093|ref|ZP_12895850.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21202]
gi|365168690|gb|EHM60028.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21202]
Length = 246
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|169348435|ref|ZP_02866373.1| hypothetical protein CLOSPI_00150 [Clostridium spiroforme DSM 1552]
gi|169293904|gb|EDS76037.1| RNA methyltransferase, TrmH family [Clostridium spiroforme DSM
1552]
Length = 238
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 37/226 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN +K +KL+Q YR G LV G + E + +++CL+
Sbjct: 2 ITSTSNNTIKTLIKLKQKK-YRDETGYYLVEGEHLVEEAM--------KAKQVECLISTK 52
Query: 142 KV--EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+ ++P V VS+ VM KLS +S + I +A KI ID
Sbjct: 53 DITSDLP---------IVIVSNEVMSKLSFTKSPQFI--MAKCKIKKENKLIDG------ 95
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
R L+LD +QDPGN+GTL+RTA+AF V L C D +++K LR+ +GA
Sbjct: 96 --------KRYLILDDLQDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGAN 147
Query: 260 FQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELA 305
F + + + + +K++ ++ +Q+ ++S+++A
Sbjct: 148 FHINCIYDDLKTVISTLKKNNVKIIGSALENGQDIKQI-KISEKMA 192
>gi|423406020|ref|ZP_17383169.1| hypothetical protein ICY_00705 [Bacillus cereus BAG2X1-3]
gi|401660689|gb|EJS78167.1| hypothetical protein ICY_00705 [Bacillus cereus BAG2X1-3]
Length = 265
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ + ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIIPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|335429690|ref|ZP_08556588.1| 23S rRNA methyltransferase [Haloplasma contractile SSD-17B]
gi|334889700|gb|EGM27985.1| 23S rRNA methyltransferase [Haloplasma contractile SSD-17B]
Length = 252
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 35/192 (18%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S +N VK KL + R S +V G + E +LQ V L++
Sbjct: 10 ISSVNNSKVKQWSKLIRQKKMRDEMNSYIVEGYHLVEE------ALQAGLVEQ---LIVS 60
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ E + D + +TV S VMKK+S + S + + A+ CR
Sbjct: 61 EDEHHQ-FDFETVYTV--SDAVMKKISDMVSPQGVLAV--------------------CR 97
Query: 202 ---SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
S S +R+L+LDGIQDPGNLGT++RTA AFK+ G+ + D ++ K +R+++G+
Sbjct: 98 QNNSVPSSSNRLLLLDGIQDPGNLGTIIRTADAFKFDGIVMSEDTVDLYNPKVIRSTQGS 157
Query: 259 CFQLPIVSGSWY 270
F++P++ + +
Sbjct: 158 LFRVPVLKANLF 169
>gi|49483300|ref|YP_040524.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus MRSA252]
gi|257425188|ref|ZP_05601614.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257427851|ref|ZP_05604249.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430486|ref|ZP_05606868.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433248|ref|ZP_05609606.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
gi|257436087|ref|ZP_05612134.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876]
gi|282903685|ref|ZP_06311573.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus C160]
gi|282905454|ref|ZP_06313309.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908427|ref|ZP_06316258.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282910712|ref|ZP_06318515.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
gi|282913912|ref|ZP_06321699.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus M899]
gi|282918835|ref|ZP_06326570.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282923957|ref|ZP_06331633.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus C101]
gi|283957880|ref|ZP_06375331.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293500947|ref|ZP_06666798.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509904|ref|ZP_06668613.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M809]
gi|293526491|ref|ZP_06671176.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus M1015]
gi|295427624|ref|ZP_06820256.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297591422|ref|ZP_06950060.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus MN8]
gi|384867982|ref|YP_005748178.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH60]
gi|386830672|ref|YP_006237326.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|415684418|ref|ZP_11449547.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CGS00]
gi|417799019|ref|ZP_12446171.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21310]
gi|418559322|ref|ZP_13123868.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21252]
gi|418566436|ref|ZP_13130817.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21264]
gi|418581967|ref|ZP_13146045.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1605]
gi|418595239|ref|ZP_13158860.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21342]
gi|418602374|ref|ZP_13165780.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21345]
gi|418655602|ref|ZP_13217453.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-105]
gi|418891767|ref|ZP_13445882.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1176]
gi|418897674|ref|ZP_13451744.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC341D]
gi|418900544|ref|ZP_13454601.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1214]
gi|418908846|ref|ZP_13462851.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG149]
gi|418916929|ref|ZP_13470888.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1267]
gi|418922716|ref|ZP_13476633.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1233]
gi|418982047|ref|ZP_13529755.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1242]
gi|418985715|ref|ZP_13533401.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1500]
gi|418993755|ref|ZP_13541392.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG290]
gi|49241429|emb|CAG40113.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus MRSA252]
gi|257272164|gb|EEV04296.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257274692|gb|EEV06179.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257278614|gb|EEV09233.1| rRNA methylase [Staphylococcus aureus subsp. aureus 68-397]
gi|257281341|gb|EEV11478.1| rRNA methylase [Staphylococcus aureus subsp. aureus E1410]
gi|257284369|gb|EEV14489.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus M876]
gi|282313929|gb|EFB44321.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus C101]
gi|282316645|gb|EFB47019.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
subsp. aureus C427]
gi|282321980|gb|EFB52304.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus M899]
gi|282325317|gb|EFB55626.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WBG10049]
gi|282328092|gb|EFB58374.1| SpoU rRNA methylase [Staphylococcus aureus subsp. aureus WW2703/97]
gi|282330746|gb|EFB60260.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595303|gb|EFC00267.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus C160]
gi|283790029|gb|EFC28846.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus A017934/97]
gi|290920563|gb|EFD97626.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus M1015]
gi|291095952|gb|EFE26213.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467354|gb|EFF09871.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus M809]
gi|295127982|gb|EFG57616.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297576308|gb|EFH95024.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus MN8]
gi|312438487|gb|ADQ77558.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH60]
gi|315193807|gb|EFU24202.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus CGS00]
gi|334274911|gb|EGL93217.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21310]
gi|371970649|gb|EHO88066.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21264]
gi|371975613|gb|EHO92907.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21252]
gi|374396074|gb|EHQ67325.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21345]
gi|374402106|gb|EHQ73149.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21342]
gi|375036353|gb|EHS29428.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-105]
gi|377703012|gb|EHT27328.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1214]
gi|377704328|gb|EHT28637.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1242]
gi|377705533|gb|EHT29837.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1500]
gi|377710377|gb|EHT34615.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1605]
gi|377731099|gb|EHT55156.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1176]
gi|377736039|gb|EHT60069.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1233]
gi|377746914|gb|EHT70884.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG290]
gi|377750103|gb|EHT74041.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1267]
gi|377754842|gb|EHT78748.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG149]
gi|377760709|gb|EHT84585.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC341D]
gi|385196064|emb|CCG15682.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus HO 5096 0412]
Length = 246
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|423395160|ref|ZP_17372361.1| hypothetical protein ICU_00854 [Bacillus cereus BAG2X1-1]
gi|401655931|gb|EJS73459.1| hypothetical protein ICU_00854 [Bacillus cereus BAG2X1-1]
Length = 265
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ + ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIIPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|384188636|ref|YP_005574532.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|326942345|gb|AEA18241.1| 23S rRNA methyltransferase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 254
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 1 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGIVTE--LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 52 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 101 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 155
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 156 IFHLPIVKGN 165
>gi|219128759|ref|XP_002184573.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404023|gb|EEC43972.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 343
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 43/54 (79%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
LVLDG+ DPGNLGTLLR+++A GV LLPG CDP++ KA+R++ G FQ+P+
Sbjct: 181 LVLDGVSDPGNLGTLLRSSVATGVAGVLLLPGSCDPWAPKAIRSAMGTTFQIPV 234
>gi|384549896|ref|YP_005739148.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus JKD6159]
gi|418563160|ref|ZP_13127602.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21262]
gi|302332745|gb|ADL22938.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus JKD6159]
gi|371971704|gb|EHO89100.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21262]
Length = 246
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|423389134|ref|ZP_17366360.1| hypothetical protein ICG_00982 [Bacillus cereus BAG1X1-3]
gi|401642409|gb|EJS60120.1| hypothetical protein ICG_00982 [Bacillus cereus BAG1X1-3]
Length = 265
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVDE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F+LPIV G+
Sbjct: 167 IFRLPIVKGN 176
>gi|387780249|ref|YP_005755047.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus LGA251]
gi|344177351|emb|CCC87817.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus LGA251]
Length = 246
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSGQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LPI++
Sbjct: 156 VFHLPIMT 163
>gi|381211893|ref|ZP_09918964.1| rRNA methylase [Lentibacillus sp. Grbi]
Length = 245
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 27/184 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS + VK KL++ R S G+ L G + E YN N + E +++ D
Sbjct: 2 ITSLQSEKVKEWAKLQRRKGRRQS-GTFLAEGFHLVEEAYNSNWEIAE-------IIVED 53
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++ D+ S V VS V++ ++ ++ + I A+ MK P F+ D
Sbjct: 54 GLDYSGWRDHFSA--VTVSRKVLQHITRTETPQGIAAVVKMKEPKE-FAGDT-------- 102
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+L++D +QDPGNLGT++RTA A + V L G D +++K +RA++G+ F
Sbjct: 103 --------VLLIDSLQDPGNLGTIIRTADAAGFDMVLLGKGTVDLYNDKVIRATQGSLFH 154
Query: 262 LPIV 265
LPI+
Sbjct: 155 LPIL 158
>gi|218905788|ref|YP_002453622.1| TrmH family RNA methyltransferase [Bacillus cereus AH820]
gi|228929608|ref|ZP_04092626.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935871|ref|ZP_04098681.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228948286|ref|ZP_04110569.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229093656|ref|ZP_04224756.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42]
gi|229124127|ref|ZP_04253319.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201]
gi|423549699|ref|ZP_17526026.1| hypothetical protein IGW_00330 [Bacillus cereus ISP3191]
gi|218537643|gb|ACK90041.1| RNA methyltransferase, TrmH family [Bacillus cereus AH820]
gi|228659429|gb|EEL15077.1| RNA methyltransferase, TrmH [Bacillus cereus 95/8201]
gi|228689743|gb|EEL43550.1| RNA methyltransferase, TrmH [Bacillus cereus Rock3-42]
gi|228811273|gb|EEM57611.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228823639|gb|EEM69461.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228829995|gb|EEM75614.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|401190495|gb|EJQ97537.1| hypothetical protein IGW_00330 [Bacillus cereus ISP3191]
Length = 265
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ K + V D
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-EKHESEVALTD------ 115
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 116 ---------GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|338707009|ref|YP_004661210.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336293813|gb|AEI36920.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
Length = 268
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 25/196 (12%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
++IT+ SNP +K LR +R G L G + E + + + +
Sbjct: 3 RSITAFSNPLIKRIRALR-DKKHRREEGLFLAEGLRILTE------AREAGYIPVYIFFA 55
Query: 140 LDKVEVP------EGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
D P E ++ + S ++ KLSG + +++ I + + T S D+
Sbjct: 56 ADSAPHPLVKTLIEAVEETGGEAIETSRDILHKLSGKDNPQTV--IGVFEAFTQSLS-DI 112
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
++ +A W LV ++DPGNLGTLLRT A GG+ L+ C DPFS +A+R
Sbjct: 113 DRHQAPI--W-------LVAQSLRDPGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAVR 163
Query: 254 ASRGACFQLPIVSGSW 269
A+ GA F IV+ W
Sbjct: 164 ATMGALFTQKIVTARW 179
>gi|165871509|ref|ZP_02216156.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488]
gi|167635640|ref|ZP_02393952.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442]
gi|167641566|ref|ZP_02399813.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193]
gi|170688235|ref|ZP_02879445.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465]
gi|170708732|ref|ZP_02899170.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389]
gi|177653114|ref|ZP_02935401.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174]
gi|190566871|ref|ZP_03019787.1| RNA methyltransferase, TrmH family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227817345|ref|YP_002817354.1| TrmH family RNA methyltransferase [Bacillus anthracis str. CDC 684]
gi|229604592|ref|YP_002868840.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248]
gi|386738457|ref|YP_006211638.1| TrmH family RNA methyltransferase [Bacillus anthracis str. H9401]
gi|164712806|gb|EDR18336.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0488]
gi|167510451|gb|EDR85850.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0193]
gi|167529060|gb|EDR91815.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0442]
gi|170126412|gb|EDS95301.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0389]
gi|170667741|gb|EDT18494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0465]
gi|172081638|gb|EDT66709.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0174]
gi|190561862|gb|EDV15831.1| RNA methyltransferase, TrmH family [Bacillus anthracis str.
Tsiankovskii-I]
gi|227005701|gb|ACP15444.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. CDC
684]
gi|229269000|gb|ACQ50637.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. A0248]
gi|384388309|gb|AFH85970.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. H9401]
Length = 265
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ K + V D
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-EKHESEVALTD------ 115
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 116 ---------GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|282916386|ref|ZP_06324148.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
subsp. aureus D139]
gi|283770197|ref|ZP_06343089.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
subsp. aureus H19]
gi|282319826|gb|EFB50174.1| RNA methyltransferase, TrmH family protein [Staphylococcus aureus
subsp. aureus D139]
gi|283460344|gb|EFC07434.1| RNA methyltransferase TrmH family protein [Staphylococcus aureus
subsp. aureus H19]
Length = 246
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIIITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|379020844|ref|YP_005297506.1| hypothetical protein M013TW_1070 [Staphylococcus aureus subsp.
aureus M013]
gi|418952065|ref|ZP_13504115.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-160]
gi|359830153|gb|AEV78131.1| hypothetical protein M013TW_1070 [Staphylococcus aureus subsp.
aureus M013]
gi|375370102|gb|EHS73938.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-160]
Length = 246
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|49474842|ref|YP_032883.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1]
gi|49237647|emb|CAF26827.1| tRNA/rRNA methyltransferase [Bartonella henselae str. Houston-1]
Length = 287
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 15/187 (8%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SNP +K L Q + R+ G + G + + N +Q L
Sbjct: 14 VKEITSLSNPIIKDLKALSQKKN-RNREGLFMAEGLKLVIDALNLGWKIQT--------L 64
Query: 139 LLDKVEVPE-GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ K ++ ++N + HTV +V+K S + +E+IA P +V I Q +
Sbjct: 65 IFSKSKISNTAIENTAAHTVANGGLVIK-----ASQKVMESIARRDNPQTVIGIFKQQWQ 119
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
+ + + LD ++DPGNLGT++RTA A GV L+ DPFS + +RA+ G
Sbjct: 120 SLEMITGQAEDVYVALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPETVRATMG 179
Query: 258 ACFQLPI 264
+ F +P+
Sbjct: 180 SIFSVPL 186
>gi|297529131|ref|YP_003670406.1| tRNA/rRNA methyltransferase SpoU [Geobacillus sp. C56-T3]
gi|297252383|gb|ADI25829.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. C56-T3]
Length = 251
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 25/189 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VK KL R G L+ G + E N L E L+
Sbjct: 1 MKRIESPKNARVKQWKKLLTKKG-RDETGLFLLEGFHLVEEAIKSNAPLVE-------LI 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ ++ VP G + V+ VM+ +S ++ + I A+ K+P
Sbjct: 53 VDERTAVPPGWNVTGVPVTIVTEAVMRAISSTETPQGIAAVC-RKLPAE----------- 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L++D +QDPGNLGT++RTA A V L GC D ++ K +RA++G+
Sbjct: 101 -----LEGVKTALLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADLYNPKVVRATQGS 155
Query: 259 CFQLPIVSG 267
F LP+V G
Sbjct: 156 LFHLPVVKG 164
>gi|196042135|ref|ZP_03109419.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99]
gi|196027071|gb|EDX65694.1| RNA methyltransferase, TrmH family [Bacillus cereus NVH0597-99]
Length = 265
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSIQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ K + V D
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-EKHESEVALTD------ 115
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 116 ---------GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|196034467|ref|ZP_03101876.1| RNA methyltransferase, TrmH family [Bacillus cereus W]
gi|254724510|ref|ZP_05186293.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
A1055]
gi|195993009|gb|EDX56968.1| RNA methyltransferase, TrmH family [Bacillus cereus W]
Length = 254
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 1 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ K + V D
Sbjct: 52 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-EKHESEVALTD------ 104
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 105 ---------GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGS 155
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 156 IFHLPIVKGN 165
>gi|30264631|ref|NP_847008.1| RNA methyltransferase [Bacillus anthracis str. Ames]
gi|47530101|ref|YP_021450.1| RNA methyltransferase [Bacillus anthracis str. 'Ames Ancestor']
gi|49187452|ref|YP_030704.1| RNA methyltransferase [Bacillus anthracis str. Sterne]
gi|65321929|ref|ZP_00394888.1| COG0566: rRNA methylases [Bacillus anthracis str. A2012]
gi|254686946|ref|ZP_05150804.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
CNEVA-9066]
gi|254736669|ref|ZP_05194375.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
Western North America USA6153]
gi|254741707|ref|ZP_05199394.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
Kruger B]
gi|254754696|ref|ZP_05206731.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
Vollum]
gi|254757528|ref|ZP_05209555.1| RNA methyltransferase, TrmH family protein [Bacillus anthracis str.
Australia 94]
gi|421509310|ref|ZP_15956217.1| 23S rRNA methyltransferase [Bacillus anthracis str. UR-1]
gi|421639173|ref|ZP_16079766.1| 23S rRNA methyltransferase [Bacillus anthracis str. BF1]
gi|30259289|gb|AAP28494.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Ames]
gi|47505249|gb|AAT33925.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. 'Ames
Ancestor']
gi|49181379|gb|AAT56755.1| RNA methyltransferase, TrmH family [Bacillus anthracis str. Sterne]
gi|401820762|gb|EJT19925.1| 23S rRNA methyltransferase [Bacillus anthracis str. UR-1]
gi|403393592|gb|EJY90835.1| 23S rRNA methyltransferase [Bacillus anthracis str. BF1]
Length = 254
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 1 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ K + V D
Sbjct: 52 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-EKHESEVALTD------ 104
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 105 ---------GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGS 155
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 156 IFHLPIVKGN 165
>gi|167037187|ref|YP_001664765.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256751285|ref|ZP_05492165.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
CCSD1]
gi|320115605|ref|YP_004185764.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856021|gb|ABY94429.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256749840|gb|EEU62864.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
CCSD1]
gi|319928696|gb|ADV79381.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 254
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 22/174 (12%)
Query: 103 RHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSV 162
R+ G V GTT + E + + E V + + K+++P+G I T R+
Sbjct: 23 RYEEGMFFVEGTTNVLEALKSDFEI-EYIVMGEGV----KIDIPKGDFEIVHTTERI--- 74
Query: 163 VMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNL 222
KK+S + + + +A++KIP V + + +K ++ D IQDPGNL
Sbjct: 75 -FKKISDTVTPQMV--MAIIKIPKYVENTYIKEKGV-----------YVIADNIQDPGNL 120
Query: 223 GTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLK 276
GT++RTA AF +F + C D F+ K LRAS G+ F +P+++ + L LK
Sbjct: 121 GTIIRTADAFGVSAIFTINNCVDVFNPKVLRASMGSIFHIPVIAATSQILLKLK 174
>gi|418324574|ref|ZP_12935808.1| RNA methyltransferase, TrmH family [Staphylococcus pettenkoferi
VCU012]
gi|365225261|gb|EHM66506.1| RNA methyltransferase, TrmH family [Staphylococcus pettenkoferi
VCU012]
Length = 246
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITST N VK KL++ R G AL+ G Y+ +++ L
Sbjct: 1 MEQITSTQNSKVKAANKLKKKRE-RDKTGHALIEG-------YHLIEEAMASDIQIVSLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + ++ V + LSG + P +F++ + Q +
Sbjct: 53 CVEAEREDAAMLDYADAVYEINLKVAELLSGTVT------------PQGIFAV-IQQPKV 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
R PS ++L++D IQDPGNLGTL+RTA A V L G DP+ +K LRAS+G+
Sbjct: 100 QDRQ--PS--QVLLIDRIQDPGNLGTLIRTADAAGLDMVVLEKGSADPYQDKVLRASQGS 155
Query: 259 CFQLPIV 265
F LPI+
Sbjct: 156 VFHLPII 162
>gi|418411576|ref|ZP_12984843.1| hypothetical protein HMPREF9281_00447 [Staphylococcus epidermidis
BVS058A4]
gi|420163502|ref|ZP_14670249.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM095]
gi|420167528|ref|ZP_14674181.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM087]
gi|394235191|gb|EJD80765.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM095]
gi|394238154|gb|EJD83637.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM087]
gi|410892302|gb|EKS40096.1| hypothetical protein HMPREF9281_00447 [Staphylococcus epidermidis
BVS058A4]
Length = 246
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNSKIKNANKLKKKRE-RDKTGLALIEGIHLIEEAY-------QSQIEVIQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++D + + + + +++ V + LSG + + A++K PT ++
Sbjct: 53 IVDPDRMSSSIIDYAKEVYQINLKVAEVLSGTVTPQGF--FAIIKKPTYDKTL------- 103
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++L++D IQDPGNLGTL+RTA A + + G DPF +K +RAS+G+
Sbjct: 104 --------AKQVLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGS 155
Query: 259 CFQLPIV 265
F +P++
Sbjct: 156 IFHIPVI 162
>gi|326391472|ref|ZP_08213007.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
JW 200]
gi|325992498|gb|EGD50955.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacter ethanolicus
JW 200]
Length = 254
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Query: 103 RHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSV 162
R+ G V GTT + E + + E V + + K+++P+G I+ T R+
Sbjct: 23 RYEEGLFFVEGTTSVLEALKSDFEI-EYIVMGEGV----KIDIPKGDFEIAHTTERI--- 74
Query: 163 VMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNL 222
KKLS + + + +A++KIP + + ++ ++ D IQDPGNL
Sbjct: 75 -FKKLSDTVTPQMV--MAIIKIP-----------KYEENTYIKEKGVYVIADNIQDPGNL 120
Query: 223 GTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMK 282
GT++RTA AF +F + C D F+ K LRAS G+ F +P+++ + L LK +K
Sbjct: 121 GTIIRTADAFGVSAIFTINNCVDIFNPKVLRASMGSIFHIPVIATTSQILLKLKRR-GIK 179
Query: 283 LLAGH 287
+ A H
Sbjct: 180 VFATH 184
>gi|423417528|ref|ZP_17394617.1| hypothetical protein IE3_01000 [Bacillus cereus BAG3X2-1]
gi|401107807|gb|EJQ15752.1| hypothetical protein IE3_01000 [Bacillus cereus BAG3X2-1]
Length = 265
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LP+V G+
Sbjct: 167 IFHLPVVKGN 176
>gi|310643902|ref|YP_003948660.1| tRNA/rRNA methyltransferase (spou) [Paenibacillus polymyxa SC2]
gi|309248852|gb|ADO58419.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus polymyxa SC2]
gi|392304626|emb|CCI70989.1| RNA methyltransferase, TrmH family [Paenibacillus polymyxa M1]
Length = 262
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 9/95 (9%)
Query: 183 KIPTSVFSIDVNQKEADCRSWFPSIHR-----ILVLDGIQDPGNLGTLLRTAMAFKWGGV 237
K P SVF+I V ++E RS F ++ ++VLDG+QDPGN+GT++R+A A GV
Sbjct: 89 KTPQSVFAI-VRKEE---RSAFAALLEQPDALVMVLDGVQDPGNVGTIIRSADAAGAAGV 144
Query: 238 FLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHL 272
L GC D ++ K +R++ G+ F LP++ GS L
Sbjct: 145 ILGHGCADLYNPKTIRSTMGSLFHLPVIEGSLEEL 179
>gi|308070687|ref|YP_003872292.1| rRNA methylase [Paenibacillus polymyxa E681]
gi|305859966|gb|ADM71754.1| rRNA methylase [Paenibacillus polymyxa E681]
Length = 262
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 24/192 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S +N VK +L + +R +V G ++E + +++ TV D LD
Sbjct: 3 IISPNNARVKEWAQLLEKK-HRARQHKYIVEGIHLVQEALRSDVAVE--TVAYD----LD 55
Query: 142 KVEVPEGLDNIS-----THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
K +P L+ ++ V VS+ V+ K + ++ +S+ AI + K SVFS + Q
Sbjct: 56 K-GIPAELNGLNPVDQPVEWVPVSAAVIAKCTDTKTPQSVFAI-VRKEERSVFSALLEQP 113
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+A ++VLDG+QDPGN+GT++R+A A GV L GC D ++ K +R++
Sbjct: 114 DA----------LVMVLDGVQDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKTIRSTM 163
Query: 257 GACFQLPIVSGS 268
G+ F LP++ GS
Sbjct: 164 GSLFHLPVIEGS 175
>gi|257867720|ref|ZP_05647373.1| RNA methyltransferase [Enterococcus casseliflavus EC30]
gi|257874047|ref|ZP_05653700.1| RNA methyltransferase [Enterococcus casseliflavus EC10]
gi|257876625|ref|ZP_05656278.1| RNA methyltransferase [Enterococcus casseliflavus EC20]
gi|257801803|gb|EEV30706.1| RNA methyltransferase [Enterococcus casseliflavus EC30]
gi|257808211|gb|EEV37033.1| RNA methyltransferase [Enterococcus casseliflavus EC10]
gi|257810791|gb|EEV39611.1| RNA methyltransferase [Enterococcus casseliflavus EC20]
Length = 259
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 26/192 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N F+K KL Q +R S L+ G ++E + V + LL
Sbjct: 7 MKEIQSKKNTFIKEIKKLTQKK-HRTQTNSYLIDGWHLVQEALH-------AQVPIKALL 58
Query: 139 LLDK--VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
+ + E LD+ + ++ + LS + + P +F++ V ++
Sbjct: 59 VTPRGLSEANGQLDDYQEESYLITEEIAAMLSDLPT------------PQGIFAV-VEKQ 105
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
E D ++ L+LD +QDPGN+GT++RTA A + GVFL G D +S K LR+ +
Sbjct: 106 EQDLQTL---TGNWLILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSMQ 162
Query: 257 GACFQLPIVSGS 268
G+ + LPIV G+
Sbjct: 163 GSNYHLPIVEGA 174
>gi|82750744|ref|YP_416485.1| rRNA methyltransferase [Staphylococcus aureus RF122]
gi|82656275|emb|CAI80689.1| rRNA methyltransferase [Staphylococcus aureus RF122]
Length = 246
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKIGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|395493030|ref|ZP_10424609.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas sp. PAMC 26617]
Length = 267
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 88/196 (44%), Gaps = 25/196 (12%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL-- 137
+ IT+ SNP +K LR+ +R G L G + E R D
Sbjct: 3 REITAYSNPLIKRVRSLREKR-HRREEGLFLAEGLRILTEAREAGRIPHYLFFARDSAAH 61
Query: 138 ----LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+L++ VE G + ++ KLSG + +++ VF+
Sbjct: 62 PLVQVLVEAVEAAGG------EAIETVPDILSKLSGKDNPQAV---------VGVFAEFT 106
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
+A RS P LV + ++DPGNLGT+LRT A GG+ L+ C DPFS +A+R
Sbjct: 107 RTLDALDRSTSPIW---LVAERLRDPGNLGTILRTGDAVGAGGLILIGECVDPFSVEAVR 163
Query: 254 ASRGACFQLPIVSGSW 269
AS GA F +P+V W
Sbjct: 164 ASMGALFTVPVVQCEW 179
>gi|240014154|ref|ZP_04721067.1| putative RNA methyltransferase [Neisseria gonorrhoeae DGI18]
gi|240121716|ref|ZP_04734678.1| putative RNA methyltransferase [Neisseria gonorrhoeae PID24-1]
Length = 261
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 96/193 (49%), Gaps = 28/193 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVR 133
+K+I+ST+N ++H +L +R + ++ G ++ R + E +
Sbjct: 1 MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEAKMP 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ +L L V +PE D I + VS ++KK+S + ++ I + L+ IP D
Sbjct: 61 SEEVLKLTAV-LPE--DGIFS----VSDGILKKISSLSCADDI--LTLIDIPLGGTLPD- 110
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
+ DC VLDG+QDPGN+GT+LR+A A + G V L GC D +S K LR
Sbjct: 111 ---KGDCA----------VLDGVQDPGNVGTVLRSAAAARVGTVVLGRGCADAWSPKVLR 157
Query: 254 ASRGACFQLPIVS 266
A GA F L I S
Sbjct: 158 AGMGAHFLLDIYS 170
>gi|42783734|ref|NP_980981.1| RNA methyltransferase [Bacillus cereus ATCC 10987]
gi|42739664|gb|AAS43589.1| RNA methyltransferase, TrmH family [Bacillus cereus ATCC 10987]
Length = 254
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E + L+
Sbjct: 1 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEEALKVGVVTE--------LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 52 VSDQTDLPKDWTVNDVEMYIVPESIVKVLRETETTQGVFAVC-----------EKHEKEV 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 101 ALAD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 155
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 156 IFHLPIVKGN 165
>gi|229032207|ref|ZP_04188180.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271]
gi|228728987|gb|EEL79990.1| RNA methyltransferase, TrmH [Bacillus cereus AH1271]
Length = 265
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 29/192 (15%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEG--LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
+ D+ ++P+ +D++ + V ++K L ++++ + A+ K + V D
Sbjct: 63 VSDQTDLPKDWTVDDVEMYIV--PEAIVKILRETETTQGVFAVC-EKHESEVALAD---- 115
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++
Sbjct: 116 -----------GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQ 164
Query: 257 GACFQLPIVSGS 268
G+ F LP+V G+
Sbjct: 165 GSIFHLPVVKGN 176
>gi|228917200|ref|ZP_04080757.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228842401|gb|EEM87492.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 265
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ K + V D
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-EKHESEVALTD------ 115
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 116 ---------GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|229158167|ref|ZP_04286235.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342]
gi|228625329|gb|EEK82088.1| RNA methyltransferase, TrmH [Bacillus cereus ATCC 4342]
Length = 265
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ K + V D
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-EKHESEVALTD------ 115
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 116 ---------GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|407972973|ref|ZP_11153886.1| tRNA/rRNA methyltransferase SpoU [Nitratireductor indicus C115]
gi|407431744|gb|EKF44415.1| tRNA/rRNA methyltransferase SpoU [Nitratireductor indicus C115]
Length = 286
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 25/226 (11%)
Query: 78 HVKNITSTSNPFVK--HCLKLRQSSSYRH---SHGSALVVGTTPIREIYNFNRSLQERTV 132
VK +TS +NP +K L +++ H + G LV I F RT
Sbjct: 13 QVKEVTSLTNPIIKDIRALSMKKFRDREHVFMAEGLKLV--------IDAFEAGWTVRT- 63
Query: 133 RMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID 192
LL E ++ ++ TV +V+ V S + + AI P V +
Sbjct: 64 ----LLYAKAGRGNEAVEKLAARTVASGGLVL-----VVSEKVLSAITRRDNPQMVVGV- 113
Query: 193 VNQKEADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
QK + P+ + + LD ++DPGNLGT+LRTA A GV L+ C DPFS +
Sbjct: 114 FEQKTLPLDAVEPAAGDVWIALDRVRDPGNLGTILRTADAVGAKGVILIGDCTDPFSIET 173
Query: 252 LRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
+RA+ G+ F +PIV + F +++ H G+ + R V
Sbjct: 174 VRATMGSVFAVPIVRAGVEAFLAWRKGFSGRVVGTHLEGSVDYRTV 219
>gi|385328432|ref|YP_005882735.1| putative RNA methyltransferase [Neisseria meningitidis alpha710]
gi|308389284|gb|ADO31604.1| putative RNA methyltransferase [Neisseria meningitidis alpha710]
Length = 261
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 45/242 (18%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT-----------TPIREIYNFNRSL 127
+K+I+ST+N ++H +L +R + ++ G P+ +
Sbjct: 1 MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGKPVGVYIPEGKMP 60
Query: 128 QERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTS 187
E R+ + VPEG VS ++KK+S + ++ + +AL+ IP +
Sbjct: 61 SEEIRRL-------RAVVPEG------RIFSVSDGILKKISSLTCADDV--LALIDIPDA 105
Query: 188 VFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPF 247
P+ +VLDG+QDPGN+GT+LR+A A G V L GC D +
Sbjct: 106 --------------GALPAGGDCVVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAW 151
Query: 248 SEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADS 307
S K LRA GA F L I S + LE+ ++ ++ A E +QV+ ++L +
Sbjct: 152 SPKVLRAGMGAHFLLDIYSQA--DLEIWLASYKGRVFATAL---REEKQVVLYGEDLCEP 206
Query: 308 FA 309
A
Sbjct: 207 TA 208
>gi|315649427|ref|ZP_07902515.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453]
gi|315275203|gb|EFU38573.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus vortex V453]
Length = 267
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 91/191 (47%), Gaps = 23/191 (12%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
I S N VK +L Q +R +V G ++E + ++ MD + L
Sbjct: 2 EILSPQNARVKGWAQL-QEKKHRDKQNKYVVEGIHLVQEALSSGADIECIAYDMDKGIPL 60
Query: 141 DKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
+ ++P+ + VS V+ K+S S P VF+ V +KEA
Sbjct: 61 ELRQIPD--RGQGAEWIGVSHAVISKVSDTPS------------PQPVFA--VVRKEA-- 102
Query: 201 RSWFPSIHR----ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
R W I R ++VLDG+QDPGN+GT++R A A GV L GC D ++ K LR++
Sbjct: 103 RQWQDLIMRENGLVIVLDGLQDPGNVGTIIRGADAVGAAGVILGRGCADLYNPKTLRSTM 162
Query: 257 GACFQLPIVSG 267
G+ F LP++ G
Sbjct: 163 GSLFHLPVLEG 173
>gi|418312506|ref|ZP_12924015.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21334]
gi|365238151|gb|EHM78988.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21334]
Length = 246
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPHY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|375009820|ref|YP_004983453.1| RNA methyltransferase TrmH [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359288669|gb|AEV20353.1| RNA methyltransferase, TrmH [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 251
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 85/192 (44%), Gaps = 31/192 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VK KL R G L+ G + E N L E L+
Sbjct: 1 MKRIESPKNARVKQWKKLLTKKG-RDETGLFLLEGFHLVEEAIKSNAPLVE-------LI 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ ++ VP G + V+ VM+ +S ++ + I A+
Sbjct: 53 VDERTAVPPGWNVTGVPVTIVTEAVMRAISSTETPQGIAAV------------------- 93
Query: 199 DCR---SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
CR + + L++D +QDPGNLGT++RTA A V L GC D ++ K +RA+
Sbjct: 94 -CRQLSTELEGVKTALLIDAVQDPGNLGTMIRTADAAGIDAVILGEGCADVYNPKVVRAT 152
Query: 256 RGACFQLPIVSG 267
+G+ F LP+V G
Sbjct: 153 QGSLFHLPVVKG 164
>gi|420185537|ref|ZP_14691629.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM040]
gi|394254523|gb|EJD99492.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
NIHLM040]
Length = 246
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 92/187 (49%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNSKIKNANKLKKKRE-RDKTGLALIEGIHLIEEAY-------QSQIEVIQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++D + + + + +++ V + LSG + + A++K PT ++
Sbjct: 53 IVDPDRMSSSIIDYAKEVYQINLKVAEVLSGTVTPQGF--FAIIKKPTYDKTL------- 103
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++L++D IQDPGNLGTL+RTA A + + G DPF +K +RAS+G+
Sbjct: 104 --------AKQVLLIDRIQDPGNLGTLIRTADAAGLELIVMEKGTADPFQDKVIRASQGS 155
Query: 259 CFQLPIV 265
F +P++
Sbjct: 156 IFHIPVI 162
>gi|253731748|ref|ZP_04865913.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253724562|gb|EES93291.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
Length = 246
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPHY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|402835347|ref|ZP_10883916.1| RNA methyltransferase, TrmH family [Mogibacterium sp. CM50]
gi|402274844|gb|EJU24015.1| RNA methyltransferase, TrmH family [Mogibacterium sp. CM50]
Length = 274
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 21/195 (10%)
Query: 76 PYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMD 135
PY + I+S N ++ +L YR G L+ G N R+ + + M+
Sbjct: 5 PY--RFISSPDNDKIRFIKRLGHKK-YRDQQGKFLIEGI-------NLVRAALSKALTME 54
Query: 136 CLLLLDKV---EVPEGLD-NISTHTVR-VSSVVMKKLSGVQSSESIEAIALMKIPTSVFS 190
+L+ D E+ E L N+ H + V + +K+S ++ I A+ + S +S
Sbjct: 55 MVLIADDFDYSEIAETLSGNVDYHRIYLVPRYLYEKISDAENGSGIIAV----VNKSSYS 110
Query: 191 IDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
+D E+ RS + ILVLD +QDPGN+GT++RTA+A + V + G D +S K
Sbjct: 111 LDT--LESMLRSHHGCVGNILVLDRLQDPGNIGTMIRTAVAAGYSIVATIKGTADIYSPK 168
Query: 251 ALRASRGACFQLPIV 265
LRAS G F + +V
Sbjct: 169 VLRASAGMIFDIAVV 183
>gi|319407885|emb|CBI81537.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
schoenbuchensis R1]
Length = 279
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 92/196 (46%), Gaps = 31/196 (15%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK ITS SNP +K L Q + R+ G + G + + N ++Q
Sbjct: 8 QVKEITSLSNPIIKSLKALNQKKN-RNRDGVFMAEGLKLVIDALNLGWAIQT-------- 58
Query: 138 LLLDKVEVPEG-LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
L+L K +V ++NI+ TV V+K S + +E+I P +V I Q
Sbjct: 59 LILSKNKVGNTVIENIAARTVARGGFVIKA-----SQKVMESITRRDNPQTVVGIFKQQ- 112
Query: 197 EADCRSWFPSIHRI--------LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFS 248
W P I I + LD ++DPGNLGT++RTA A GV L+ DPFS
Sbjct: 113 ------WHP-IEMIKGLTQDVYIALDRVRDPGNLGTIIRTADAVGAKGVMLIGETTDPFS 165
Query: 249 EKALRASRGACFQLPI 264
+ +RA+ G+ F +P+
Sbjct: 166 PETVRATMGSIFSVPL 181
>gi|423719007|ref|ZP_17693189.1| tRNA/rRNA methyltransferase spoU [Geobacillus thermoglucosidans
TNO-09.020]
gi|383367910|gb|EID45185.1| tRNA/rRNA methyltransferase spoU [Geobacillus thermoglucosidans
TNO-09.020]
Length = 256
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 23/190 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S NP VK KL R G L+ G + E N S+ + V+
Sbjct: 1 MKRIESVKNPQVKQWKKLLMKKE-RDKTGLFLIEGFHLVEEALKSNISIIQLIVK----- 54
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ +P D V+ VMK +S ++ + I A+ D++ A
Sbjct: 55 --ENKAIPATWDISGIPVAIVTEDVMKAISDTETPQGIAAVC-----EQFLYGDIDWTRA 107
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ +L++D +QDPGN+GT++RTA A V L GC D ++ K +RA++G+
Sbjct: 108 N----------VLLIDAVQDPGNIGTMIRTADAAGIDAVILGKGCADLYNPKVIRATQGS 157
Query: 259 CFQLPIVSGS 268
F LPI+ G+
Sbjct: 158 LFHLPIIRGN 167
>gi|312109966|ref|YP_003988282.1| tRNA/rRNA methyltransferase SpoU [Geobacillus sp. Y4.1MC1]
gi|336234390|ref|YP_004587006.1| tRNA/rRNA methyltransferase SpoU [Geobacillus thermoglucosidasius
C56-YS93]
gi|311215067|gb|ADP73671.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus sp. Y4.1MC1]
gi|335361245|gb|AEH46925.1| tRNA/rRNA methyltransferase (SpoU) [Geobacillus thermoglucosidasius
C56-YS93]
Length = 256
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 23/190 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S NP VK KL R G L+ G + E N S+ + V+
Sbjct: 1 MKRIESVKNPQVKQWKKLLMKKE-RDKTGLFLIEGFHLVEEALKSNISIIQLIVK----- 54
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ +P D V+ VMK +S ++ + I A+ D++ A
Sbjct: 55 --ENKAIPATWDISGIPVAIVTEDVMKAISDTETPQGIAAVC-----EQFLYGDIDWTRA 107
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ +L++D +QDPGN+GT++RTA A V L GC D ++ K +RA++G+
Sbjct: 108 N----------VLLIDAVQDPGNIGTMIRTADAAGIDAVILGKGCADLYNPKVIRATQGS 157
Query: 259 CFQLPIVSGS 268
F LPI+ G+
Sbjct: 158 LFHLPIIRGN 167
>gi|295706828|ref|YP_003599903.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
gi|294804487|gb|ADF41553.1| 23S rRNA methyltransferase [Bacillus megaterium DSM 319]
Length = 252
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 23/194 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S NP VK KL R G +V G + E ++E +R
Sbjct: 1 MKQIDSVKNPQVKAWKKLHNKKD-RDKQGLFMVEGFHLVEEAIKNKDCVKELIIR----- 54
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ +EVP + V+ ++K LS ++ P + ++ K A
Sbjct: 55 --ESIEVPAQWNIDGIEITVVNEAIIKLLSDTET------------PQGIIAVCFQTKHA 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ + ++L+LD +QDPGNLGT++RTA A + + G D ++ K +R+++GA
Sbjct: 101 EI---IHTAQKVLLLDAVQDPGNLGTIIRTADAAGVDAIIVGEGSVDVYNPKVVRSTQGA 157
Query: 259 CFQLPIVSGSWYHL 272
F LPIV G +
Sbjct: 158 IFHLPIVKGDLLEM 171
>gi|206890340|ref|YP_002248180.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742278|gb|ACI21335.1| RNA methyltransferase, TrmH family [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 261
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 105/210 (50%), Gaps = 28/210 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSL--QERTV--RM 134
+K I S NP +K K++++ + +V T+ + + Y F + E+ + +
Sbjct: 1 MKLIQSPENPLIKEIKKIKETQRRKIFFEGVHLVETSLVSD-YVFTEKVFVTEKFIEKQK 59
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
+ L +L + ++P + +S V K +S + + + AIA KI ++N
Sbjct: 60 NFLEILQEKKIP---------VIIISEKVAKTISDTVTPQGVFAIADFKIK------NIN 104
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
D + P+ I++ D IQDPGN+GT++R A AF V + G C+PFS KALRA
Sbjct: 105 ----DLSN--PTF--IVIADRIQDPGNIGTIIRAAEAFGAEAVLVTHGTCNPFSNKALRA 156
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLL 284
S G+ F LP++ + +E ++ + L+
Sbjct: 157 SAGSIFFLPVIKVTVKEIEEFVSKYGLNLV 186
>gi|168335308|ref|ZP_02693406.1| tRNA/rRNA methyltransferase (SpoU) [Epulopiscium sp. 'N.t.
morphotype B']
Length = 262
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 24/187 (12%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
KNITS +NP +K+ +L+ S R +V GT + ++ N M+ L
Sbjct: 4 KNITSITNPIIKNVKELQSKKSTRQKESLFVVXGTRAVHDLAN----------TMEILYF 53
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPT-SVFSIDVNQKEA 198
+ + N T + VS V +S ++ + + AI + + + F+I N
Sbjct: 54 IATQNIDXSDYNPKTQWITVSDNVYTHISDTKTPQGLMAIVKQRNKSLNDFTIKQN---- 109
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
L+L+GI+DPGNLGT++RTA +FL C + +S K +RA+ GA
Sbjct: 110 ---------GTYLILEGIKDPGNLGTIVRTAYGLFVDAIFLTKDCVELYSPKVVRATMGA 160
Query: 259 CFQLPIV 265
++ I+
Sbjct: 161 ISKIDII 167
>gi|334341008|ref|YP_004545988.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum ruminis DSM
2154]
gi|334092362|gb|AEG60702.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum ruminis DSM
2154]
Length = 265
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 16/188 (8%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
IT+ NP +K+ +L Q +R LV G + E + L+ + L L
Sbjct: 3 ITAAQNPKIKYIRRLAQRG-FRQKEKKFLVEGVRLVEEAFASGWRLESFVYTPEALQLDR 61
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++ +N ++V+ +M ++S ++ + I A+ + Q E
Sbjct: 62 SAQLLREAENRCQQVLQVTPGIMAEISDTETPQGILAV-------------LWQPEYALA 108
Query: 202 SWFP--SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
P I ++V+D +QDPGNLGT++R+A A GV LL G D ++ K LR++ G+
Sbjct: 109 DVLPPGQIPLVVVVDRVQDPGNLGTIIRSADAAGATGVILLKGTVDLYNPKTLRSTMGSL 168
Query: 260 FQLPIVSG 267
F LP+V G
Sbjct: 169 FHLPVVPG 176
>gi|15924127|ref|NP_371661.1| rRNA methylase [Staphylococcus aureus subsp. aureus Mu50]
gi|15926721|ref|NP_374254.1| hypothetical protein SA0984 [Staphylococcus aureus subsp. aureus
N315]
gi|21282749|ref|NP_645837.1| hypothetical protein MW1020 [Staphylococcus aureus subsp. aureus
MW2]
gi|49485975|ref|YP_043196.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57651746|ref|YP_186010.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus COL]
gi|87160549|ref|YP_493734.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194838|ref|YP_499636.1| hypothetical protein SAOUHSC_01091 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148267629|ref|YP_001246572.1| tRNA/rRNA methyltransferase SpoU [Staphylococcus aureus subsp.
aureus JH9]
gi|150393684|ref|YP_001316359.1| tRNA/rRNA methyltransferase SpoU [Staphylococcus aureus subsp.
aureus JH1]
gi|151221260|ref|YP_001332082.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979459|ref|YP_001441718.1| hypothetical protein SAHV_1128 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509311|ref|YP_001574970.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221140465|ref|ZP_03564958.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253317080|ref|ZP_04840293.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255005923|ref|ZP_05144524.2| RNA methyltransferase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257795133|ref|ZP_05644112.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781]
gi|258407159|ref|ZP_05680308.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763]
gi|258421750|ref|ZP_05684671.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719]
gi|258432906|ref|ZP_05688595.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299]
gi|258443396|ref|ZP_05691739.1| rRNA methylase [Staphylococcus aureus A8115]
gi|258446069|ref|ZP_05694231.1| rRNA methylase [Staphylococcus aureus A6300]
gi|258449818|ref|ZP_05697916.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224]
gi|258451834|ref|ZP_05699855.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948]
gi|258454917|ref|ZP_05702880.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937]
gi|262048719|ref|ZP_06021601.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30]
gi|262051661|ref|ZP_06023880.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3]
gi|269202749|ref|YP_003282018.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
gi|282894164|ref|ZP_06302395.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117]
gi|282919914|ref|ZP_06327643.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765]
gi|282928659|ref|ZP_06336256.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102]
gi|284024062|ref|ZP_06378460.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus 132]
gi|294848127|ref|ZP_06788874.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754]
gi|295405941|ref|ZP_06815750.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819]
gi|296275624|ref|ZP_06858131.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus MR1]
gi|297208226|ref|ZP_06924656.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297246501|ref|ZP_06930339.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796]
gi|300912303|ref|ZP_07129746.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH70]
gi|304381306|ref|ZP_07363959.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|379014330|ref|YP_005290566.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus VC40]
gi|384861731|ref|YP_005744451.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|384864363|ref|YP_005749722.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|384869670|ref|YP_005752384.1| tRNA/rRNA methyltransferase SpoU [Staphylococcus aureus subsp.
aureus T0131]
gi|387142748|ref|YP_005731141.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus TW20]
gi|387150278|ref|YP_005741842.1| SpoU rRNA Methylase family protein [Staphylococcus aureus 04-02981]
gi|415688456|ref|ZP_11452146.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|415694447|ref|ZP_11455898.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus CGS03]
gi|417648500|ref|ZP_12298324.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21189]
gi|417652170|ref|ZP_12301923.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21172]
gi|417655662|ref|ZP_12305372.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21193]
gi|417796260|ref|ZP_12443475.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21305]
gi|417801433|ref|ZP_12448523.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21318]
gi|417894593|ref|ZP_12538607.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21201]
gi|418280949|ref|ZP_12893771.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21178]
gi|418286360|ref|ZP_12899006.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21209]
gi|418318063|ref|ZP_12929478.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21232]
gi|418321821|ref|ZP_12933160.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus VCU006]
gi|418424277|ref|ZP_12997401.1| hypothetical protein MQA_02068 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418427267|ref|ZP_13000281.1| hypothetical protein MQC_01646 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418430112|ref|ZP_13003029.1| hypothetical protein MQE_01568 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418433071|ref|ZP_13005853.1| hypothetical protein MQG_01480 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418436746|ref|ZP_13008550.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS5]
gi|418439618|ref|ZP_13011327.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS6]
gi|418442669|ref|ZP_13014272.1| hypothetical protein MQM_02276 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418445728|ref|ZP_13017207.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS8]
gi|418448673|ref|ZP_13020067.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS9]
gi|418451497|ref|ZP_13022832.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS10]
gi|418454554|ref|ZP_13025817.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418457428|ref|ZP_13028633.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS11b]
gi|418568112|ref|ZP_13132466.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21272]
gi|418570968|ref|ZP_13135222.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21283]
gi|418578967|ref|ZP_13143062.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1114]
gi|418598361|ref|ZP_13161871.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21343]
gi|418638931|ref|ZP_13201204.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-3]
gi|418643042|ref|ZP_13205228.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-24]
gi|418647595|ref|ZP_13209658.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-88]
gi|418649225|ref|ZP_13211253.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-91]
gi|418653767|ref|ZP_13215696.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-99]
gi|418657853|ref|ZP_13219607.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-111]
gi|418663436|ref|ZP_13224954.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-122]
gi|418873286|ref|ZP_13427593.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-125]
gi|418875070|ref|ZP_13429332.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC93]
gi|418877985|ref|ZP_13432220.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1165]
gi|418880811|ref|ZP_13435030.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1213]
gi|418883738|ref|ZP_13437935.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1769]
gi|418886396|ref|ZP_13440545.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1150]
gi|418894754|ref|ZP_13448851.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1057]
gi|418903346|ref|ZP_13457387.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1770]
gi|418906073|ref|ZP_13460100.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC345D]
gi|418911743|ref|ZP_13465726.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG547]
gi|418914232|ref|ZP_13468204.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC340D]
gi|418920211|ref|ZP_13474144.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC348]
gi|418925369|ref|ZP_13479271.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG2018]
gi|418928393|ref|ZP_13482279.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1612]
gi|418931199|ref|ZP_13485041.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1750]
gi|418934038|ref|ZP_13487862.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC128]
gi|418949129|ref|ZP_13501389.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-157]
gi|418953447|ref|ZP_13505440.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-189]
gi|418987958|ref|ZP_13535631.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1835]
gi|418990997|ref|ZP_13538658.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1096]
gi|419775274|ref|ZP_14301216.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus CO-23]
gi|419785785|ref|ZP_14311532.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-M]
gi|422743474|ref|ZP_16797458.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
aureus subsp. aureus MRSA177]
gi|422745633|ref|ZP_16799572.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
aureus subsp. aureus MRSA131]
gi|424777703|ref|ZP_18204662.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus CM05]
gi|424784964|ref|ZP_18211767.1| rRNA methylase [Staphylococcus aureus CN79]
gi|440708161|ref|ZP_20888836.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21282]
gi|440734584|ref|ZP_20914196.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|443635779|ref|ZP_21119901.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21236]
gi|448742608|ref|ZP_21724547.1| rRNA methylase [Staphylococcus aureus KT/314250]
gi|13700937|dbj|BAB42233.1| SA0984 [Staphylococcus aureus subsp. aureus N315]
gi|14246907|dbj|BAB57299.1| similar to rRNA methylase [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204187|dbj|BAB94885.1| MW1020 [Staphylococcus aureus subsp. aureus MW2]
gi|49244418|emb|CAG42846.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57285932|gb|AAW38026.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus COL]
gi|87126523|gb|ABD21037.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87202396|gb|ABD30206.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147740698|gb|ABQ48996.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
aureus JH9]
gi|149946136|gb|ABR52072.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
aureus JH1]
gi|150374060|dbj|BAF67320.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156721594|dbj|BAF78011.1| hypothetical protein SAHV_1128 [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368120|gb|ABX29091.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|257789105|gb|EEV27445.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9781]
gi|257841314|gb|EEV65759.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9763]
gi|257842083|gb|EEV66511.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A9719]
gi|257849346|gb|EEV73323.1| TrmH family rRNA methyltransferase [Staphylococcus aureus A9299]
gi|257851486|gb|EEV75425.1| rRNA methylase [Staphylococcus aureus A8115]
gi|257855127|gb|EEV78068.1| rRNA methylase [Staphylococcus aureus A6300]
gi|257856738|gb|EEV79641.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A6224]
gi|257860442|gb|EEV83269.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5948]
gi|257862797|gb|EEV85562.1| tRNA/rRNA methyltransferase [Staphylococcus aureus A5937]
gi|259160396|gb|EEW45421.1| hypothetical protein SA930_1488 [Staphylococcus aureus 930918-3]
gi|259163175|gb|EEW47735.1| hypothetical protein SAD30_1549 [Staphylococcus aureus D30]
gi|262075039|gb|ACY11012.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus ED98]
gi|269940631|emb|CBI49010.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus TW20]
gi|282589698|gb|EFB94784.1| TrmH family RNA methyltransferase [Staphylococcus aureus A10102]
gi|282594630|gb|EFB99614.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9765]
gi|282763650|gb|EFC03779.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8117]
gi|285816817|gb|ADC37304.1| SpoU rRNA Methylase family protein [Staphylococcus aureus 04-02981]
gi|294824927|gb|EFG41349.1| TrmH family RNA methyltransferase [Staphylococcus aureus A9754]
gi|294969376|gb|EFG45396.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8819]
gi|296886965|gb|EFH25868.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297176607|gb|EFH35870.1| TrmH family RNA methyltransferase [Staphylococcus aureus A8796]
gi|300886549|gb|EFK81751.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH70]
gi|302750960|gb|ADL65137.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304340289|gb|EFM06230.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312829530|emb|CBX34372.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315128534|gb|EFT84539.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus CGS03]
gi|315196860|gb|EFU27203.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|320141048|gb|EFW32895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
aureus subsp. aureus MRSA131]
gi|320143105|gb|EFW34895.1| RNA 2'-O ribose methyltransferase substrate binding [Staphylococcus
aureus subsp. aureus MRSA177]
gi|329313805|gb|AEB88218.1| tRNA/rRNA methyltransferase (SpoU) [Staphylococcus aureus subsp.
aureus T0131]
gi|329725190|gb|EGG61679.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21172]
gi|329728880|gb|EGG65301.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21193]
gi|329730768|gb|EGG67147.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21189]
gi|334269759|gb|EGL88172.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21305]
gi|334276791|gb|EGL95041.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21318]
gi|341851777|gb|EGS92686.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21201]
gi|365167050|gb|EHM58527.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21178]
gi|365167068|gb|EHM58544.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21209]
gi|365224436|gb|EHM65701.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus VCU006]
gi|365244755|gb|EHM85412.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21232]
gi|371980794|gb|EHO97995.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21272]
gi|371981848|gb|EHO99009.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21283]
gi|374363027|gb|AEZ37132.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus VC40]
gi|374399718|gb|EHQ70854.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21343]
gi|375016155|gb|EHS09799.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-24]
gi|375017978|gb|EHS11573.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-99]
gi|375019980|gb|EHS13523.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-3]
gi|375029305|gb|EHS22633.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-88]
gi|375029598|gb|EHS22923.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-91]
gi|375034084|gb|EHS27259.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-122]
gi|375039962|gb|EHS32874.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-111]
gi|375366340|gb|EHS70340.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-125]
gi|375369694|gb|EHS73563.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-157]
gi|375375047|gb|EHS78656.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-189]
gi|377694107|gb|EHT18472.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1165]
gi|377695618|gb|EHT19978.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1057]
gi|377696994|gb|EHT21349.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1114]
gi|377715032|gb|EHT39229.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1750]
gi|377715472|gb|EHT39662.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1769]
gi|377719746|gb|EHT43916.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1835]
gi|377723119|gb|EHT47244.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1096]
gi|377725121|gb|EHT49236.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG547]
gi|377726578|gb|EHT50689.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1150]
gi|377731704|gb|EHT55757.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1213]
gi|377738305|gb|EHT62314.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1612]
gi|377742361|gb|EHT66346.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG1770]
gi|377744438|gb|EHT68415.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIG2018]
gi|377757734|gb|EHT81622.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC340D]
gi|377765373|gb|EHT89223.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC345D]
gi|377765570|gb|EHT89419.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC348]
gi|377771115|gb|EHT94873.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC93]
gi|377771818|gb|EHT95572.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Staphylococcus aureus subsp. aureus CIGC128]
gi|383361992|gb|EID39351.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus IS-M]
gi|383970958|gb|EID87048.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus CO-23]
gi|387719177|gb|EIK07129.1| hypothetical protein MQE_01568 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387719337|gb|EIK07286.1| hypothetical protein MQC_01646 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387720687|gb|EIK08590.1| hypothetical protein MQA_02068 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387725937|gb|EIK13528.1| hypothetical protein MQG_01480 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387728276|gb|EIK15769.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS5]
gi|387730839|gb|EIK18192.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS6]
gi|387736262|gb|EIK23359.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS8]
gi|387737616|gb|EIK24678.1| hypothetical protein MQM_02276 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387738349|gb|EIK25393.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS9]
gi|387745322|gb|EIK32081.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS10]
gi|387746015|gb|EIK32760.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387747986|gb|EIK34685.1| TrmH family RNA methyltransferase [Staphylococcus aureus subsp.
aureus VRS11b]
gi|402346383|gb|EJU81473.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus CM05]
gi|408423358|emb|CCJ10769.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|408425348|emb|CCJ12735.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|408427336|emb|CCJ14699.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|408429323|emb|CCJ26488.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|408431311|emb|CCJ18626.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|408433305|emb|CCJ20590.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|408435296|emb|CCJ22556.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|408437281|emb|CCJ24524.1| Similar to rRNA methylase [Staphylococcus aureus subsp. aureus
ST228]
gi|421956374|gb|EKU08703.1| rRNA methylase [Staphylococcus aureus CN79]
gi|436431612|gb|ELP28965.1| RNA methyltransferase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|436505259|gb|ELP41187.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21282]
gi|443408838|gb|ELS67349.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21236]
gi|445546646|gb|ELY14933.1| rRNA methylase [Staphylococcus aureus KT/314250]
Length = 246
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPHY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVMT 163
>gi|294501480|ref|YP_003565180.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
gi|294351417|gb|ADE71746.1| 23S rRNA methyltransferase [Bacillus megaterium QM B1551]
Length = 252
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 23/205 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S NP VK KL R G +V G + E ++E +R
Sbjct: 1 MKQIDSVKNPQVKAWKKLHNKKD-RDKQGLFMVEGFHLVEEAIKNKDCVKELIIR----- 54
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ +EVP + V+ ++K LS ++ P + ++ K A
Sbjct: 55 --ESIEVPAQWNIDGIEITVVNEAIIKLLSDTET------------PQGIIAVCFQTKHA 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ + ++L+LD +QDPGNLGT++RTA A + + G D ++ K +R+++GA
Sbjct: 101 EI---IHTAQKVLLLDAVQDPGNLGTIIRTADAAGVEAIIVGEGSVDVYNPKVVRSTQGA 157
Query: 259 CFQLPIVSGSWYHLEVLKDEFQMKL 283
F LPIV G + L E ++ +
Sbjct: 158 IFHLPIVKGDLLEMISLLKEREIAV 182
>gi|291614086|ref|YP_003524243.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
ES-1]
gi|291584198|gb|ADE11856.1| tRNA/rRNA methyltransferase (SpoU) [Sideroxydans lithotrophicus
ES-1]
Length = 261
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 91/197 (46%), Gaps = 37/197 (18%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYN---------FNRSLQE 129
+K ITS NPF K ++ S+ R G L+ G+ +R + N Q+
Sbjct: 4 IKRITSRDNPFYKSLHRISSSARERREAGQTLLDGSHLLRAFLDNGGKPKHLLLNEQAQQ 63
Query: 130 RTVRMDCLLLLDK-VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSV 188
+ + LLD V+VP+ + + +LS +++ + +AL+ IP +
Sbjct: 64 DA---EIVALLDACVDVPQ---------TQFEDALFAQLSELKTPNGL--LALIDIPAAQ 109
Query: 189 FSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFS 248
+ S F L+L+ IQDPGNLG++LR+A A VF+ PGC D +S
Sbjct: 110 VEV--------AHSQFA-----LLLEDIQDPGNLGSILRSAAAAGCDAVFMSPGCADAWS 156
Query: 249 EKALRASRGACFQLPIV 265
K LRA G F L I+
Sbjct: 157 PKVLRAGMGGHFALSIL 173
>gi|150389425|ref|YP_001319474.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
gi|149949287|gb|ABR47815.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
metalliredigens QYMF]
Length = 272
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 61/103 (59%), Gaps = 10/103 (9%)
Query: 166 KLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTL 225
K++ ++ + I A+ MK + S+D+ +KE I+VLD IQDPGNLGT+
Sbjct: 89 KIADTETPQGIIAVVEMK-NHQLESLDLEKKENPF---------IVVLDEIQDPGNLGTI 138
Query: 226 LRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
+RTA K + L GC DP++ K++RA+ GA F LPI+ +
Sbjct: 139 IRTAEGAKTDAIILTKGCVDPYNSKSIRATMGAIFHLPIIQSN 181
>gi|451344338|ref|ZP_21913398.1| hypothetical protein HMPREF9943_01623 [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449337052|gb|EMD16220.1| hypothetical protein HMPREF9943_01623 [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 238
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 94/192 (48%), Gaps = 42/192 (21%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS SNP +K + L+ + +H LV G + E +L V D ++ D
Sbjct: 3 ITSLSNPLIKKIMGLKTKKNRIINH-QYLVEGKHMVEE------ALLSGVV--DVVITTD 53
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC- 200
K N+ T+ V+ +MKK IA K P +I C
Sbjct: 54 K--------NVKDATI-VNENIMKK------------IAFTKNPQPYMAI--------CH 84
Query: 201 --RSWFPSIH-RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
+S+ + + R L+LD IQDPGNLGTL+RTA+AF + + L D +++K LRA++G
Sbjct: 85 KRKSYLDTENKRTLILDDIQDPGNLGTLIRTALAFGFNQIVLSEDTVDVYNDKVLRATQG 144
Query: 258 ACFQLPIVSGSW 269
A +++ IV+G+
Sbjct: 145 AIYRVNIVNGAL 156
>gi|433454625|ref|ZP_20413192.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Mycoplasma sp. G5847]
gi|431933292|gb|ELK19886.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Mycoplasma sp. G5847]
Length = 255
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 93/185 (50%), Gaps = 24/185 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S SNP +K LKL+ +R+ +V G I E YN + + + + L +
Sbjct: 4 ISSVSNPRIKEILKLK-DRRHRNKQKLFIVEGFHMIMEAYN--DKIIKTLLGTNKALQVL 60
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
K E+P NI + +S V KK+S +S+ I AI M T + D
Sbjct: 61 KDEIP----NIE-EVIEISDNVAKKISETVTSQQIFAICSMPENTKI----------DFE 105
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+ IL+LD IQDPGNLGTL+R+A +F + V P + ++K LR+++G FQ
Sbjct: 106 ------NNILLLDQIQDPGNLGTLIRSAASFNFKTVIASPNSANFHNQKVLRSTQGNLFQ 159
Query: 262 LPIVS 266
+ +++
Sbjct: 160 VNLIN 164
>gi|85707839|ref|ZP_01038905.1| rRNA methylase [Erythrobacter sp. NAP1]
gi|85689373|gb|EAQ29376.1| rRNA methylase [Erythrobacter sp. NAP1]
Length = 266
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 95/205 (46%), Gaps = 30/205 (14%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIY---NFNRSL--QERTVRM 134
K+IT SNP VK+ LR +R G LV G + + + R L E R
Sbjct: 3 KHITGFSNPTVKYLRSLRDKK-HRKRAGQFLVEGLRLLEDARVSGHVPRQLVMAENRDRH 61
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
D L+D++E G + + ++ K++G +S+S+ + ++ TS+ +D
Sbjct: 62 D---LVDRLEGEVG--AAGGEVITTTPDILSKITGKSNSQSVVGV-FDELDTSLARLD-- 113
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
W LV ++DPGNLGT+LRT A GG+ L+ C DPFS +A+RA
Sbjct: 114 --RGSANIW-------LVAQDLRDPGNLGTMLRTGDAVGAGGLILIDDCADPFSAEAVRA 164
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEF 279
S GA F + W DEF
Sbjct: 165 SMGAVFTQGMAQARW-------DEF 182
>gi|387819398|ref|YP_005679745.1| TrmH family RNA methyltransferase [Clostridium botulinum H04402
065]
gi|322807442|emb|CBZ05016.1| RNA methyltransferase, TrmH family [Clostridium botulinum H04402
065]
Length = 259
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 23/197 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S N +K KLR+ YR + S +V G E N S+ + + L L+
Sbjct: 2 ISSKDNQLIKEVRKLREKK-YRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLE 60
Query: 142 KVEVPEGLDN-ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA-D 199
++ ++N I T+ V S V+K + ++ + I ++ I+ +KE D
Sbjct: 61 ELYKKYNINNDIETYVVNYS--VLKSIGNTENPQGIVSV-----------INYFKKEKLD 107
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
++ F +++D +QDPGN+GT++RTA A GV G D ++EK LR++ G+
Sbjct: 108 LQNGF-----YILVDKVQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSI 162
Query: 260 FQLPIVSGSWYHLEVLK 276
F +PI+ +LEV+K
Sbjct: 163 FYIPIIEDE--NLEVVK 177
>gi|302389955|ref|YP_003825776.1| TrmH family RNA methyltransferase [Thermosediminibacter oceani DSM
16646]
gi|302200583|gb|ADL08153.1| RNA methyltransferase, TrmH family, group 3 [Thermosediminibacter
oceani DSM 16646]
Length = 265
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 17/178 (9%)
Query: 90 VKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGL 149
+K L Q +YR HG LV G E N + L E V D L + ++ E
Sbjct: 11 IKMIRALAQLKNYRKRHGLFLVEGLRATEEALNSD-YLVEFLVVSDDFLERHREKIKE-Y 68
Query: 150 DNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHR 209
+NI + V V LS ++ + I A+ V K + S +
Sbjct: 69 ENIKVY--EVPRKVYDTLSDTEAPQGIMAV-------------VRMKNHELTSIYEDNFL 113
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
I+ LDGI+DPGN+GT++RTA A G+ GC D ++ K +R++ G+ F LP++ G
Sbjct: 114 IVALDGIKDPGNIGTIIRTADAAGASGILAGKGCVDIYNPKVVRSTMGSIFHLPVIEG 171
>gi|229175269|ref|ZP_04302784.1| RNA methyltransferase, TrmH [Bacillus cereus MM3]
gi|228608101|gb|EEK65408.1| RNA methyltransferase, TrmH [Bacillus cereus MM3]
Length = 265
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ K + V D
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-EKHESEVALAD------ 115
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 116 ---------GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LP+V G+
Sbjct: 167 IFHLPVVKGN 176
>gi|452990450|emb|CCQ98350.1| Uncharacterized tRNA/rRNA methyltransferase YsgA [Clostridium
ultunense Esp]
Length = 260
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 22/189 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVR--MDCLLL 139
ITS NP VK KL + R L+ G + E ++ + D LL
Sbjct: 2 ITSDRNPRVKEWAKLLRKKG-REEEKRFLIEGVRLVEEALRSGAPVEVLLFQSGRDYSLL 60
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKI--PTSVFSIDVNQKE 197
D +P G++ T VS V++KL+ + ++ I A+ M++ P S F +K
Sbjct: 61 RD---LPPGIE-----TWEVSEAVIRKLAATEETQGIMAVVRMEVEGPFSSFLAGEREKH 112
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
+ +L +DG+QDPGNLGT++RTA A GV L G D ++ K +R++ G
Sbjct: 113 SSL---------LLFVDGVQDPGNLGTIIRTADAAGADGVLLGEGTVDLYNPKTVRSTMG 163
Query: 258 ACFQLPIVS 266
+ F LPI S
Sbjct: 164 SLFHLPIRS 172
>gi|423400592|ref|ZP_17377765.1| hypothetical protein ICW_00990 [Bacillus cereus BAG2X1-2]
gi|423478699|ref|ZP_17455414.1| hypothetical protein IEO_04157 [Bacillus cereus BAG6X1-1]
gi|401655316|gb|EJS72850.1| hypothetical protein ICW_00990 [Bacillus cereus BAG2X1-2]
gi|402426730|gb|EJV58845.1| hypothetical protein IEO_04157 [Bacillus cereus BAG6X1-1]
Length = 265
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ K + V D
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-EKHESEVALAD------ 115
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 116 ---------GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LP+V G+
Sbjct: 167 IFHLPVVKGN 176
>gi|423457203|ref|ZP_17434000.1| hypothetical protein IEI_00343 [Bacillus cereus BAG5X2-1]
gi|401148980|gb|EJQ56463.1| hypothetical protein IEI_00343 [Bacillus cereus BAG5X2-1]
Length = 265
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ K + V D
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-EKHESEVALAD------ 115
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 116 ---------GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDAYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LP+V G+
Sbjct: 167 IFHLPVVKGN 176
>gi|345017983|ref|YP_004820336.1| hypothetical protein Thewi_1652 [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033326|gb|AEM79052.1| LOW QUALITY PROTEIN: hypothetical protein Thewi_1652
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 254
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Query: 103 RHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSV 162
R+ G V GTT + E + + E V + + K+++P+G I+ T R+
Sbjct: 23 RYEEGLFFVEGTTSVLEALKSDFEI-EYIVMGEGV----KIDIPKGDFEIAHTTERI--- 74
Query: 163 VMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNL 222
KK+S + + + +A++KIP + + ++ ++ D IQDPGNL
Sbjct: 75 -FKKISDTVTPQMV--MAIIKIP-----------KYEENTYIKEKGVYVIADNIQDPGNL 120
Query: 223 GTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMK 282
GT++RTA AF +F + C D F+ K LRAS G+ F +P+++ + L LK +K
Sbjct: 121 GTIIRTADAFGVSAIFTINNCVDIFNPKVLRASMGSIFHIPVIATTSQILLKLKRR-GIK 179
Query: 283 LLAGH 287
+ A H
Sbjct: 180 VFATH 184
>gi|358056270|ref|ZP_09147550.1| SpoU rRNA methylase family protein [Staphylococcus simiae CCM 7213]
gi|357256678|gb|EHJ07016.1| SpoU rRNA methylase family protein [Staphylococcus simiae CCM 7213]
Length = 246
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G + E + + + L
Sbjct: 1 MEQITSAQNSKIKQANKLKKKRE-RDKTGLALIEGIHLVEEAVKSD-------INIKQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + + T ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPSRLDQQMIDYAQETYEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D IQDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DVTQA----KQVLLIDRIQDPGNLGTLIRTADAAGIDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIV 265
F +P++
Sbjct: 156 VFHVPVI 162
>gi|392940294|ref|ZP_10305938.1| rRNA methylase [Thermoanaerobacter siderophilus SR4]
gi|392292044|gb|EIW00488.1| rRNA methylase [Thermoanaerobacter siderophilus SR4]
Length = 241
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 23/185 (12%)
Query: 103 RHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSV 162
R+ G V GTT + E + + E V + + K+++P+G I+ T R+
Sbjct: 10 RYEEGLFFVEGTTSVLEALKSDFEI-EYIVMGEGV----KIDIPKGDFEIAHTTERI--- 61
Query: 163 VMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNL 222
KK+S + + + +A++KIP + + ++ ++ D IQDPGNL
Sbjct: 62 -FKKISDTVTPQMV--MAIIKIP-----------KYEENTYIKEKGVYVIADNIQDPGNL 107
Query: 223 GTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMK 282
GT++RTA AF +F + C D F+ K LRAS G+ F +P+++ + L LK +K
Sbjct: 108 GTIIRTADAFGVSAIFTINNCVDIFNPKVLRASMGSIFHIPVIATTSQILLKLKRR-GIK 166
Query: 283 LLAGH 287
+ A H
Sbjct: 167 VFATH 171
>gi|153815882|ref|ZP_01968550.1| hypothetical protein RUMTOR_02127 [Ruminococcus torques ATCC 27756]
gi|317500638|ref|ZP_07958857.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089882|ref|ZP_08338775.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438573|ref|ZP_08618205.1| hypothetical protein HMPREF0990_00599 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145846701|gb|EDK23619.1| RNA methyltransferase, TrmH family [Ruminococcus torques ATCC
27756]
gi|316897956|gb|EFV20008.1| RNA methyltransferase [Lachnospiraceae bacterium 8_1_57FAA]
gi|330403579|gb|EGG83137.1| hypothetical protein HMPREF1025_02358 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336018964|gb|EGN48698.1| hypothetical protein HMPREF0990_00599 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 261
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 19/184 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN VK L+L++ S R G +V G EI +ER V++
Sbjct: 2 ITSTSNIQVKELLRLQKKSREREKEGVFIVEGPRMAEEIP------RERIVKLYVSESFQ 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
V E D +S V +S ++ + I A+ V + E
Sbjct: 56 AKCVKEKNDRFIQEAEVMSDTVFAHVSDTKTPQGILAV-------------VRRMEYTAE 102
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+LVL+ IQDPGNLGT+ RTA A G+ L C D ++ K +R++ GA F+
Sbjct: 103 DILGETPHVLVLENIQDPGNLGTIFRTAEAAGATGIVLSKDCVDLYNPKVIRSTMGAIFR 162
Query: 262 LPIV 265
+P +
Sbjct: 163 IPFI 166
>gi|433536758|ref|ZP_20493263.1| spoU rRNA Methylase family protein [Neisseria meningitidis 77221]
gi|432273694|gb|ELL28791.1| spoU rRNA Methylase family protein [Neisseria meningitidis 77221]
Length = 261
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 111/244 (45%), Gaps = 45/244 (18%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT-----------TPIREIYNFNRSL 127
+++I+ST+N ++H +L +R + ++ G P+ +
Sbjct: 1 MRHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGMPVGVYIPEGKMP 60
Query: 128 QERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTS 187
E R+ + VPEG VS ++KK+S + ++ I +AL+ IP
Sbjct: 61 SEEIRRL-------RAVVPEG------RIFSVSDGILKKISSLSCADDI--LALIDIPLG 105
Query: 188 VFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPF 247
D + DC +VLDG+QDPGN+GT+LR+A A G V L GC D +
Sbjct: 106 GTLPD----KGDC----------VVLDGVQDPGNVGTVLRSAAAAGIGVVVLGKGCADAW 151
Query: 248 SEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADS 307
S K LRA GA F L I S + LE+ ++ ++ A E +QV+ ++L +
Sbjct: 152 SPKVLRAGMGAHFLLDIYSQA--DLEIWLASYKGRVFATAL---REEKQVVLYGEDLCEP 206
Query: 308 FAGV 311
A V
Sbjct: 207 TAWV 210
>gi|254294115|ref|YP_003060138.1| tRNA/rRNA methyltransferase SpoU [Hirschia baltica ATCC 49814]
gi|254042646|gb|ACT59441.1| tRNA/rRNA methyltransferase (SpoU) [Hirschia baltica ATCC 49814]
Length = 275
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 15/215 (6%)
Query: 76 PYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMD 135
PY ++ITSTSNP +K L+ R+ G L G I + F + V +
Sbjct: 5 PY--EHITSTSNPTIK-LLRGLDRKKVRNDTGLFLAEGARLIVDALKFGWKPKYVLVGSE 61
Query: 136 CLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
+ D V I T+ SS ++ +S + ++I A A + T++ +++ +
Sbjct: 62 TIDRPDIQHVISQCAEIGARTLTTSSRILSAVSRKDNPQTIIA-AFEQQTTTLEALETSG 120
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
K+ R + L +DPGNLGT+LRTA A GV L+ CCDPFS + +RA+
Sbjct: 121 KK-----------RFIALYEARDPGNLGTILRTADAAGIDGVILVEQCCDPFSVECVRAT 169
Query: 256 RGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGG 290
GA F IV S+ + + + +K+ A G
Sbjct: 170 MGALFSNNIVLASFTEFDNWRRKANIKMAAASVNG 204
>gi|253733629|ref|ZP_04867794.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|417899571|ref|ZP_12543473.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21259]
gi|253728329|gb|EES97058.1| TrmH family rRNA methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|341844499|gb|EGS85711.1| RNA methyltransferase, TrmH family [Staphylococcus aureus subsp.
aureus 21259]
Length = 246
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPHY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIV 265
F LP++
Sbjct: 156 VFHLPVM 162
>gi|328956925|ref|YP_004374311.1| putative RNA methylase [Carnobacterium sp. 17-4]
gi|328673249|gb|AEB29295.1| putative RNA methylase [Carnobacterium sp. 17-4]
Length = 261
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 30/196 (15%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I ST N VK+ KL QS R G+ L+ G I E +L+ + ++ ++ +
Sbjct: 10 ILSTKNERVKNWKKL-QSRRGRQKAGAYLIEGFHLIEE------ALKNHAIILEIMISEE 62
Query: 142 KV--EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
V ++PE D V +S+ + K LS ++S+ I A+ V ID K
Sbjct: 63 VVVGDIPE-FD--EAKQVEISTEIAKLLSETETSQGIFAV--------VKKIDQLDKPIL 111
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
+ + L LD +QDPGN+GT++RTA A +GGV L G D ++ K LR+ +G+
Sbjct: 112 TKPF-------LFLDNVQDPGNVGTMVRTADAAGFGGVVLGKGSVDLYNSKVLRSMQGSH 164
Query: 260 FQLPIVSG---SWYHL 272
F LP+ G W+ L
Sbjct: 165 FHLPVYQGDLNEWFDL 180
>gi|313901164|ref|ZP_07834652.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
gi|422327524|ref|ZP_16408551.1| hypothetical protein HMPREF0981_01871 [Erysipelotrichaceae
bacterium 6_1_45]
gi|312954122|gb|EFR35802.1| RNA methyltransferase, TrmH family [Clostridium sp. HGF2]
gi|371663364|gb|EHO28554.1| hypothetical protein HMPREF0981_01871 [Erysipelotrichaceae
bacterium 6_1_45]
Length = 243
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 41/193 (21%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
ITS +N VK KL++ YR LV G I E R ++ +L
Sbjct: 2 EITSLTNAKVKQWAKLKEKK-YREKDQRFLVEGEHLIEE--------AARAGLVEAVL-- 50
Query: 141 DKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
VE+ + + V+ +++KL S I A+ C
Sbjct: 51 --VEIGKAHTFVEYPVYEVTKDILRKLESSVSGTWIMAV--------------------C 88
Query: 201 RSWFPSIH------RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
R P H R++VLD +QDPGN+GT++RTA++F + V L CD ++EK +R+
Sbjct: 89 R--MPQYHDAEFGKRVIVLDDVQDPGNVGTIIRTAVSFGYDAVLLSAHSCDVYNEKVIRS 146
Query: 255 SRGACFQLPIVSG 267
++GA F +P++ G
Sbjct: 147 TQGALFHIPVIRG 159
>gi|257066829|ref|YP_003153085.1| tRNA/rRNA methyltransferase SpoU [Anaerococcus prevotii DSM 20548]
gi|256798709|gb|ACV29364.1| tRNA/rRNA methyltransferase (SpoU) [Anaerococcus prevotii DSM
20548]
Length = 241
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 34/210 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S +NP K KLR + YR G ++ I E N + D L L +
Sbjct: 3 IKSQANPKFKLIKKLR-NKKYRDKEGLFVIESRKLIEEAIKSNADI-------DFLFLRE 54
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA-DC 200
+ EG + + + KLS ++S + A+ + +KEA D
Sbjct: 55 GISF-EG----NIPYLVFDENLFAKLSELKSPDGYAAV-------------IRKKEACDL 96
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
+S RIL+LD I DPGN+GT++R+A AF + + L GC D ++EK LRAS G+ F
Sbjct: 97 KS-----DRILLLDHISDPGNMGTIIRSAEAFGFSDIILTKGCVDIYNEKCLRASMGSVF 151
Query: 261 QLPIVSGSWYHLEVLKDEFQMKLLAGHAGG 290
+ IV S + LK + + L+ H G
Sbjct: 152 RENIVELSLEEIRKLKKNY--RFLSSHMEG 179
>gi|448744697|ref|ZP_21726581.1| TrmH family rRNA methyltransferase [Staphylococcus aureus KT/Y21]
gi|445562003|gb|ELY18188.1| TrmH family rRNA methyltransferase [Staphylococcus aureus KT/Y21]
Length = 246
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAY-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + +
Sbjct: 53 AIEPARLDQQIIAYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPHY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISKA----QQVLLIDRVQDPGNLGTLIRTADAAGMDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIV 265
F LP++
Sbjct: 156 VFHLPVM 162
>gi|170754304|ref|YP_001782766.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra]
gi|429246451|ref|ZP_19209771.1| RNA methyltransferase [Clostridium botulinum CFSAN001628]
gi|169119516|gb|ACA43352.1| RNA methyltransferase, TrmH family [Clostridium botulinum B1 str.
Okra]
gi|428756541|gb|EKX79093.1| RNA methyltransferase [Clostridium botulinum CFSAN001628]
Length = 259
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 23/197 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S N +K KLR+ YR + S ++ G E N S+ + + L L+
Sbjct: 2 ISSKDNQLIKEVRKLREKK-YRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLE 60
Query: 142 KVEVPEGLDN-ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA-D 199
++ ++N I T+ V S V+K + ++ + I ++ I+ +KE D
Sbjct: 61 ELYKKYNINNDIETYVVNYS--VLKSIGNTENPQGIVSV-----------INYFKKEKLD 107
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
++ F +++D +QDPGN+GT++RTA A GV G D ++EK LR++ G+
Sbjct: 108 LQNGF-----YILVDKVQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSI 162
Query: 260 FQLPIVSGSWYHLEVLK 276
F +PI+ +LEV+K
Sbjct: 163 FYIPIIEDE--NLEVVK 177
>gi|256545522|ref|ZP_05472882.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170]
gi|256398733|gb|EEU12350.1| SpoU class tRNA/rRNA methylase [Anaerococcus vaginalis ATCC 51170]
Length = 243
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 19/149 (12%)
Query: 143 VEVPEGLDNISTHTVRV--SSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
V V E + + T+ ++ S+ + KLS +++ E + A +K NQKE
Sbjct: 49 VFVNEDMKDYETNFKKIVFSNKLFDKLSLLENPEGVSACLKIK----------NQKEI-- 96
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
S +IL+LD IQDPGNLGT++R+A AF + + LL C D ++EK +RAS G+ F
Sbjct: 97 -----SSDKILLLDHIQDPGNLGTIIRSAEAFSFKDIILLNSCVDIYNEKTIRASMGSIF 151
Query: 261 QLPIVSGSWYHLEVLKDEFQMKLLAGHAG 289
+L + L+ L D+ +LA G
Sbjct: 152 RLNFIEVEINDLKDLLDKNYKLVLADMNG 180
>gi|228987811|ref|ZP_04147920.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228771859|gb|EEM20316.1| RNA methyltransferase, TrmH [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 265
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 91/190 (47%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ K + V D
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-EKHESEVALTD------ 115
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K +R+++G+
Sbjct: 116 ---------GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVIRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LPIV G+
Sbjct: 167 IFHLPIVKGN 176
>gi|153939007|ref|YP_001392409.1| RNA methyltransferase [Clostridium botulinum F str. Langeland]
gi|384463381|ref|YP_005675976.1| TrmH family RNA methyltransferase [Clostridium botulinum F str.
230613]
gi|152934903|gb|ABS40401.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str.
Langeland]
gi|295320398|gb|ADG00776.1| RNA methyltransferase, TrmH family [Clostridium botulinum F str.
230613]
Length = 259
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 23/197 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S N +K KLR+ YR + S ++ G E N S+ + + L L+
Sbjct: 2 ISSKDNQLIKEVRKLREKK-YRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLE 60
Query: 142 KVEVPEGLDN-ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA-D 199
++ ++N I T+ V S V+K + ++ + I ++ I+ +KE D
Sbjct: 61 ELYKKYNINNDIETYVVNYS--VLKSIGNTENPQGIVSV-----------INYFKKEKLD 107
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
++ F +++D +QDPGN+GT++RTA A GV G D ++EK LR++ G+
Sbjct: 108 LQNGF-----YILVDKVQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSI 162
Query: 260 FQLPIVSGSWYHLEVLK 276
F +PI+ +LEV+K
Sbjct: 163 FYIPIIEDE--NLEVVK 177
>gi|390454411|ref|ZP_10239939.1| tRNA/rRNA methyltransferase (spou) [Paenibacillus peoriae KCTC
3763]
Length = 264
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 11/116 (9%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGI 216
+ VS+ V+ K + ++ +S+ AI + P S F+ + Q +A ++VLDG+
Sbjct: 75 IPVSAAVIAKCTDTKTPQSVFAIVRKEEP-SAFAALLEQPDA----------LVMVLDGV 123
Query: 217 QDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHL 272
QDPGN+GT++R+A A GV L GC D ++ K +R++ G+ F LP++ GS L
Sbjct: 124 QDPGNVGTIIRSADAAGAAGVILGHGCADLYNPKTIRSTMGSLFHLPVIEGSLEEL 179
>gi|254493723|ref|ZP_05106894.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
gi|268594782|ref|ZP_06128949.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|268596894|ref|ZP_06131061.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|268598935|ref|ZP_06133102.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
gi|268603614|ref|ZP_06137781.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
gi|268682090|ref|ZP_06148952.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|268684300|ref|ZP_06151162.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
gi|385335684|ref|YP_005889631.1| putative RNA methyltransferase [Neisseria gonorrhoeae TCDC-NG08107]
gi|226512763|gb|EEH62108.1| RNA methyltransferase [Neisseria gonorrhoeae 1291]
gi|268548171|gb|EEZ43589.1| RNA methyltransferase [Neisseria gonorrhoeae 35/02]
gi|268550682|gb|EEZ45701.1| RNA methyltransferase [Neisseria gonorrhoeae FA19]
gi|268583066|gb|EEZ47742.1| RNA methyltransferase [Neisseria gonorrhoeae MS11]
gi|268587745|gb|EEZ52421.1| RNA methyltransferase [Neisseria gonorrhoeae PID1]
gi|268622374|gb|EEZ54774.1| RNA methyltransferase [Neisseria gonorrhoeae PID332]
gi|268624584|gb|EEZ56984.1| RNA methyltransferase [Neisseria gonorrhoeae SK-92-679]
gi|317164227|gb|ADV07768.1| putative RNA methyltransferase [Neisseria gonorrhoeae TCDC-NG08107]
Length = 261
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 28/193 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVR 133
+K+I+ST+N ++H +L +R + ++ G ++ R + E +
Sbjct: 1 MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEAKMP 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ +L L V +PE D I + VS ++KK+S + ++ I + L+ IP D
Sbjct: 61 SEEVLKLTAV-LPE--DGIFS----VSDGILKKISSLSCADEI--LTLIDIPLGGTLPD- 110
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
+ DC VLDG+QDPGN+GT+LR+A A G V L GC D +S K LR
Sbjct: 111 ---KGDCA----------VLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR 157
Query: 254 ASRGACFQLPIVS 266
A GA F L I S
Sbjct: 158 AGMGAHFLLDIYS 170
>gi|59801230|ref|YP_207942.1| RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
gi|194098554|ref|YP_002001616.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945]
gi|268601289|ref|ZP_06135456.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|291043881|ref|ZP_06569597.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|293399091|ref|ZP_06643256.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62]
gi|59718125|gb|AAW89530.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA 1090]
gi|193933844|gb|ACF29668.1| putative RNA methyltransferase [Neisseria gonorrhoeae NCCP11945]
gi|268585420|gb|EEZ50096.1| RNA methyltransferase [Neisseria gonorrhoeae PID18]
gi|291012344|gb|EFE04333.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291610505|gb|EFF39615.1| TrmH family RNA methyltransferase [Neisseria gonorrhoeae F62]
Length = 261
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 95/193 (49%), Gaps = 28/193 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVR 133
+K+I+ST+N ++H +L +R + ++ G ++ R + E +
Sbjct: 1 MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEAKMP 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ +L L V +PE D I + VS ++KK+S + ++ I + L+ IP D
Sbjct: 61 SEEVLKLTAV-LPE--DGIFS----VSDGILKKISSLSCADDI--LTLIDIPLGGTLPD- 110
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
+ DC VLDG+QDPGN+GT+LR+A A G V L GC D +S K LR
Sbjct: 111 ---KGDCA----------VLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR 157
Query: 254 ASRGACFQLPIVS 266
A GA F L I S
Sbjct: 158 AGMGAHFLLDIYS 170
>gi|317129877|ref|YP_004096159.1| tRNA/rRNA methyltransferase SpoU [Bacillus cellulosilyticus DSM
2522]
gi|315474825|gb|ADU31428.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus cellulosilyticus DSM
2522]
Length = 250
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 88/183 (48%), Gaps = 23/183 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I STSNP VK KL S R G LV G I E ++E + +D
Sbjct: 4 IESTSNPRVKTWKKL-HSRKGREKTGLFLVEGVHLIEEALKAFIHMKELVIDVDK----- 57
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
E+P + V V++ VMK++ ++ + +A+ ++P D +
Sbjct: 58 --EIPVEWKVSNVPQVFVTNKVMKEICETETPQGF--VAICELP-------------DNK 100
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+ + L LDG+QDPGN+G ++RTA A GV L G DPF+ K +RA++G+ F
Sbjct: 101 NVPLERGKFLFLDGLQDPGNVGAIIRTADAAGINGVVLGEGTVDPFNGKVIRATQGSIFH 160
Query: 262 LPI 264
LP+
Sbjct: 161 LPV 163
>gi|148381081|ref|YP_001255622.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
ATCC 3502]
gi|153930840|ref|YP_001385454.1| RNA methyltransferase [Clostridium botulinum A str. ATCC 19397]
gi|153936028|ref|YP_001388861.1| RNA methyltransferase [Clostridium botulinum A str. Hall]
gi|168179627|ref|ZP_02614291.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC
2916]
gi|148290565|emb|CAL84694.1| putative RNA methylase [Clostridium botulinum A str. ATCC 3502]
gi|152926884|gb|ABS32384.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
ATCC 19397]
gi|152931942|gb|ABS37441.1| RNA methyltransferase, TrmH family [Clostridium botulinum A str.
Hall]
gi|182669725|gb|EDT81701.1| RNA methyltransferase, TrmH family [Clostridium botulinum NCTC
2916]
Length = 259
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 23/197 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S N +K KLR+ YR + S +V G E N S+ + + L L+
Sbjct: 2 ISSKDNQLIKEVRKLREKK-YRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLE 60
Query: 142 KVEVPEGLDN-ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA-D 199
++ ++N I T+ V S V+K + ++ + I ++ I+ +KE D
Sbjct: 61 ELYKKYNINNDIETYVVSYS--VLKSIGNTENPQGIVSV-----------INYFKKEKLD 107
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
++ F +++D +QDPGN+GT++RTA A G+ G D ++EK LR++ G+
Sbjct: 108 LQNGF-----YILVDKVQDPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMGSI 162
Query: 260 FQLPIVSGSWYHLEVLK 276
F +PI+ +LEV+K
Sbjct: 163 FYIPIIEDE--NLEVVK 177
>gi|284048831|ref|YP_003399170.1| tRNA/rRNA methyltransferase SpoU [Acidaminococcus fermentans DSM
20731]
gi|283953052|gb|ADB47855.1| tRNA/rRNA methyltransferase (SpoU) [Acidaminococcus fermentans DSM
20731]
Length = 260
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 28/193 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+ +TS N VK L+ YR G L+ G R+++E +
Sbjct: 2 ITTLTSLKNDLVKRAASLKMKK-YRQKEGLFLLEG----------KRAVEEALASGWTIR 50
Query: 139 LLDKVEVPEG----LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
L +PEG +N S V V++K++ + +S+ A+ V
Sbjct: 51 ALFFTRLPEGWEQQAENSSLPWYEVPLPVLQKITATEDPQSVAAL-------------VE 97
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ + ++ P +LVLD I+DPGNLGTL+RTA A GV LL D ++ K +R+
Sbjct: 98 LRREELAAFAPERGMVLVLDRIRDPGNLGTLIRTADALGAAGVVLLENTADLYNPKVVRS 157
Query: 255 SRGACFQLPIVSG 267
+ G+ F LP+ +G
Sbjct: 158 TMGSLFHLPVFTG 170
>gi|242373369|ref|ZP_04818943.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
gi|242348732|gb|EES40334.1| TrmH family rRNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
Length = 270
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ + R G AL+ G I E Q+ + + L
Sbjct: 25 MEQITSAQNNKIKNA-NKLKKKRDRDKTGQALIEGIHLIEE-------AQQSGITIQQLF 76
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+++ E L N + T ++ V + LSG + P F++ +++ +
Sbjct: 77 VIEPDRTDEALLNYANETYEINMKVAEALSGTVT------------PQGFFAV-IDKPQY 123
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D IQDPGNLGTL+RTA A + + G DP+ +K +RAS+G+
Sbjct: 124 DVSKA----QQVLLIDRIQDPGNLGTLIRTADAAGLDLIVMEKGTADPYQDKVMRASQGS 179
Query: 259 CFQLPIVS 266
F +P+V+
Sbjct: 180 IFHIPVVT 187
>gi|168181825|ref|ZP_02616489.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf]
gi|237796588|ref|YP_002864140.1| TrmH family RNA methyltransferase [Clostridium botulinum Ba4 str.
657]
gi|182675129|gb|EDT87090.1| RNA methyltransferase, TrmH family [Clostridium botulinum Bf]
gi|229263217|gb|ACQ54250.1| RNA methyltransferase, TrmH family [Clostridium botulinum Ba4 str.
657]
Length = 259
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 23/197 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S N +K KLR+ YR + S ++ G E N S+ + + L L+
Sbjct: 2 ISSKDNQLIKEVRKLREKK-YRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLE 60
Query: 142 KVEVPEGLDN-ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA-D 199
++ ++N I T+ V S V+K + ++ + I ++ I+ +KE D
Sbjct: 61 ELYKKYNINNDIETYVVSYS--VLKSIGNTENPQGIVSV-----------INYFKKEKLD 107
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
++ F +++D +QDPGN+GT++RTA A GV G D ++EK LR++ G+
Sbjct: 108 LQNGF-----YILVDKVQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSI 162
Query: 260 FQLPIVSGSWYHLEVLK 276
F +PI+ +LEV+K
Sbjct: 163 FYIPIIEDE--NLEVVK 177
>gi|379795507|ref|YP_005325505.1| SpoU rRNA methylase family protein [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356872497|emb|CCE58836.1| SpoU rRNA Methylase family protein [Staphylococcus aureus subsp.
aureus MSHR1132]
Length = 246
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K KL++ R G AL+ G I E + + + + L
Sbjct: 1 MEQITSAQNNRIKQANKLKKKRE-RDKTGLALIEGVHLIEEAH-------QSGIVITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + + + + ++ V + LSG + P F+I + + +
Sbjct: 53 AIEPARLDQQIIEYAQEVFEINMKVAESLSGTVT------------PQGFFAI-IEKPQY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++L++D +QDPGNLGTL+RTA A V + G DP+ +K LRAS+G+
Sbjct: 100 DISQA----QQVLLIDRVQDPGNLGTLIRTADAAGIDAVIMEKGTTDPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F LP+++
Sbjct: 156 VFHLPVLT 163
>gi|187776946|ref|ZP_02993419.1| hypothetical protein CLOSPO_00490 [Clostridium sporogenes ATCC
15579]
gi|187775605|gb|EDU39407.1| RNA methyltransferase, TrmH family [Clostridium sporogenes ATCC
15579]
Length = 259
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 97/196 (49%), Gaps = 21/196 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S N +K KLR+ YR + S +V G E N S+ + + L L+
Sbjct: 2 ISSKDNQLIKEVRKLREKK-YRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLE 60
Query: 142 KVEVPEGLDN-ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
K+ ++N I T+ V S V+K +S ++ + I ++ + F + + D
Sbjct: 61 KLYKKYNINNDIETYVVNYS--VLKSISNTENPQGIVSV------INYFKTE----KLDL 108
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
+ F +++D +QDPGN+GT++RTA A G+ G D ++EK LR++ G+ F
Sbjct: 109 ENGF-----YILVDKVQDPGNMGTIIRTAHAAGALGIITTKGTVDVYNEKTLRSTMGSIF 163
Query: 261 QLPIVSGSWYHLEVLK 276
+PI+ +LE +K
Sbjct: 164 YIPIIEDE--NLETVK 177
>gi|158334661|ref|YP_001515833.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
gi|158304902|gb|ABW26519.1| RNA methyltransferase, TrmH family [Acaryochloris marina MBIC11017]
Length = 261
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 86/185 (46%), Gaps = 25/185 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS NP +K KL+Q +R G L+ GT ++ + N S + + C
Sbjct: 2 ITSLQNPLIKQMRKLQQVK-HRRQQGKLLLEGTHLLQSAWEQNWSFE-----IVCYTDRW 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ + P+ I T R+ V S E ++A A P V ++ R
Sbjct: 56 QAKYPQIWQQIQDRTTRLERV---------SPEVLQATATTVHPDGVVAVI-------SR 99
Query: 202 SWFPS--IHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
PS I + L L+ IQDPGNLGTL+RT++A + G+ L C D S K LRAS GA
Sbjct: 100 PATPSLPIQTLGLALETIQDPGNLGTLIRTSVATQVEGLLLNQQCADLESPKVLRASAGA 159
Query: 259 CFQLP 263
F LP
Sbjct: 160 WFHLP 164
>gi|403529943|ref|YP_006664472.1| tRNA/rRNA methyltransferase [Bartonella quintana RM-11]
gi|403232015|gb|AFR25758.1| tRNA/rRNA methyltransferase [Bartonella quintana RM-11]
Length = 273
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 29/194 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SNP +K L Q + R+ G + G + + N ++Q L
Sbjct: 9 VKEITSLSNPIIKDLKALSQKKN-RNREGLFMAEGLKLVIDALNLEWTIQT--------L 59
Query: 139 LLDKVEVPE-GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ K ++ + ++NI+ HT+ +V+K S + +E+I P + I Q
Sbjct: 60 IFSKSKIGDTAIENIAAHTIANGGLVIK-----ASKKVMESITRRDNPQTAIGIFKQQ-- 112
Query: 198 ADCRSWFP--SIHR-----ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
W P I R + LD ++DPGNLGT++RT A GV L+ DPFS +
Sbjct: 113 -----WQPLEMIKRRNEDVYVALDRVRDPGNLGTIIRTVDAVGAKGVILIGETTDPFSLE 167
Query: 251 ALRASRGACFQLPI 264
+RA+ G+ F +P+
Sbjct: 168 TVRATMGSIFSIPL 181
>gi|238019331|ref|ZP_04599757.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748]
gi|237864030|gb|EEP65320.1| hypothetical protein VEIDISOL_01195 [Veillonella dispar ATCC 17748]
Length = 264
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 33/192 (17%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVR-------- 133
I S N +K + L Q + R+ HG +V G IR+I + N ++ +R
Sbjct: 4 IQSKDNKTIKRIVSLGQRKN-RNKHGEYIVEGIRSIRDISS-NGVIKTIVIRESKFKDNN 61
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPT-SVFSID 192
++ LL LD ++ S T + K+ + + I IA++ P S+ SI
Sbjct: 62 IEALLALDSMQ--------SIPTYIAQDPIFDKIDNTVNGQGI--IAIVAKPNHSIESIS 111
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
+ + LDG+QDPGNLGT++RTA+A G+FL+ G DPF++K +
Sbjct: 112 IEDG------------VYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTV 159
Query: 253 RASRGACFQLPI 264
R++ A ++P+
Sbjct: 160 RSTMSALHKIPV 171
>gi|229135394|ref|ZP_04264183.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196]
gi|228648090|gb|EEL04136.1| RNA methyltransferase, TrmH [Bacillus cereus BDRD-ST196]
Length = 265
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R + V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDNKALFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LP+V G+
Sbjct: 167 IFHLPVVKGN 176
>gi|229013763|ref|ZP_04170891.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048]
gi|229169288|ref|ZP_04296999.1| RNA methyltransferase, TrmH [Bacillus cereus AH621]
gi|423368589|ref|ZP_17346021.1| hypothetical protein IC3_03690 [Bacillus cereus VD142]
gi|423489724|ref|ZP_17466406.1| hypothetical protein IEU_04347 [Bacillus cereus BtB2-4]
gi|423495447|ref|ZP_17472091.1| hypothetical protein IEW_04345 [Bacillus cereus CER057]
gi|423497758|ref|ZP_17474375.1| hypothetical protein IEY_00985 [Bacillus cereus CER074]
gi|423512662|ref|ZP_17489193.1| hypothetical protein IG3_04159 [Bacillus cereus HuA2-1]
gi|423519244|ref|ZP_17495725.1| hypothetical protein IG7_04314 [Bacillus cereus HuA2-4]
gi|423591464|ref|ZP_17567495.1| hypothetical protein IIG_00332 [Bacillus cereus VD048]
gi|423598146|ref|ZP_17574146.1| hypothetical protein III_00948 [Bacillus cereus VD078]
gi|423660596|ref|ZP_17635765.1| hypothetical protein IKM_00993 [Bacillus cereus VDM022]
gi|423670125|ref|ZP_17645154.1| hypothetical protein IKO_03822 [Bacillus cereus VDM034]
gi|423673668|ref|ZP_17648607.1| hypothetical protein IKS_01211 [Bacillus cereus VDM062]
gi|228614183|gb|EEK71297.1| RNA methyltransferase, TrmH [Bacillus cereus AH621]
gi|228747432|gb|EEL97307.1| RNA methyltransferase, TrmH [Bacillus mycoides DSM 2048]
gi|401080115|gb|EJP88405.1| hypothetical protein IC3_03690 [Bacillus cereus VD142]
gi|401150354|gb|EJQ57813.1| hypothetical protein IEW_04345 [Bacillus cereus CER057]
gi|401159601|gb|EJQ66984.1| hypothetical protein IG7_04314 [Bacillus cereus HuA2-4]
gi|401162238|gb|EJQ69596.1| hypothetical protein IEY_00985 [Bacillus cereus CER074]
gi|401232832|gb|EJR39330.1| hypothetical protein IIG_00332 [Bacillus cereus VD048]
gi|401237607|gb|EJR44058.1| hypothetical protein III_00948 [Bacillus cereus VD078]
gi|401297485|gb|EJS03094.1| hypothetical protein IKO_03822 [Bacillus cereus VDM034]
gi|401302504|gb|EJS08083.1| hypothetical protein IKM_00993 [Bacillus cereus VDM022]
gi|401310533|gb|EJS15849.1| hypothetical protein IKS_01211 [Bacillus cereus VDM062]
gi|402431015|gb|EJV63087.1| hypothetical protein IEU_04347 [Bacillus cereus BtB2-4]
gi|402447586|gb|EJV79436.1| hypothetical protein IG3_04159 [Bacillus cereus HuA2-1]
Length = 265
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R + V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDNKALFFVEGFHLVEE------ALKAGVVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F LP+V G+
Sbjct: 167 IFHLPVVKGN 176
>gi|427408374|ref|ZP_18898576.1| hypothetical protein HMPREF9718_01050 [Sphingobium yanoikuyae ATCC
51230]
gi|425712684|gb|EKU75698.1| hypothetical protein HMPREF9718_01050 [Sphingobium yanoikuyae ATCC
51230]
Length = 265
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 23/195 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT---TPIREIYNFNRSL-QERTVRM 134
+ IT SNP VK LR+ YR + G L G T RE L +
Sbjct: 2 AREITGFSNPLVKRVRSLREKK-YRKAEGLFLAEGLRILTEAREEGVLPEMLFHAGSTHP 60
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
L L+D +E +G D I T + ++ K+SG +++++ + ++ T + +D N
Sbjct: 61 LALDLIDAIEA-DGGDVIET-----TPDILSKISGKDNAQAVVGVYRDRL-TPLEKLDRN 113
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ W +V ++DPGNLGT+LRT A GG+ L+ C DPFS +++RA
Sbjct: 114 TADI----W-------IVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRA 162
Query: 255 SRGACFQLPIVSGSW 269
S GA F I W
Sbjct: 163 SMGALFTQSITQARW 177
>gi|49473698|ref|YP_031740.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse]
gi|49239201|emb|CAF25517.1| tRNA/rRNA methyltransferase [Bartonella quintana str. Toulouse]
Length = 278
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 92/194 (47%), Gaps = 29/194 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SNP +K L Q + R+ G + G + + N ++Q L
Sbjct: 14 VKEITSLSNPIIKDLKALSQKKN-RNREGLFMAEGLKLVIDALNLEWTIQT--------L 64
Query: 139 LLDKVEVPE-GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ K ++ + ++NI+ HT+ +V+K S + +E+I P + I Q
Sbjct: 65 IFSKSKIGDTAIENIAAHTIANGGLVIK-----ASKKVMESITRRDNPQTAIGIFKQQ-- 117
Query: 198 ADCRSWFP--SIHR-----ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
W P I R + LD ++DPGNLGT++RT A GV L+ DPFS +
Sbjct: 118 -----WQPLEMIKRRNEDVYVALDRVRDPGNLGTIIRTVDAVGAKGVILIGETTDPFSLE 172
Query: 251 ALRASRGACFQLPI 264
+RA+ G+ F +P+
Sbjct: 173 TVRATMGSIFSIPL 186
>gi|406667448|ref|ZP_11075205.1| Putative TrmH family tRNA/rRNA methyltransferase [Bacillus
isronensis B3W22]
gi|405384652|gb|EKB44094.1| Putative TrmH family tRNA/rRNA methyltransferase [Bacillus
isronensis B3W22]
Length = 253
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 25/191 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I ST N VKH KL R G +V G + E + + VR
Sbjct: 1 MKRIESTQNALVKHWKKLVTQRKEREKTGEYIVEGFHLVEEALKHKDQIVQIIVR----- 55
Query: 139 LLDKVEVPE--GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
D V++P +D + V V+ V K+++ ++S+ + A +
Sbjct: 56 --DGVDLPLLWAIDEVVL--VHVNEAVSKEIAETENSQGVFAHCKQR----------QIS 101
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
E + W ++L++D +QDPGN+GT++RTA A V L G D F+ K+LR+++
Sbjct: 102 EDEQFDW----KKVLLVDAVQDPGNIGTMIRTADAAGIDAVVLGKGSVDAFNPKSLRSAQ 157
Query: 257 GACFQLPIVSG 267
G+ F +P+V G
Sbjct: 158 GSHFHIPVVRG 168
>gi|393199951|ref|YP_006461793.1| rRNA methylase [Solibacillus silvestris StLB046]
gi|327439282|dbj|BAK15647.1| rRNA methylase [Solibacillus silvestris StLB046]
Length = 253
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 25/191 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I ST N VKH KL R G +V G + E + + VR
Sbjct: 1 MKRIESTQNALVKHWKKLVTQRKEREKTGEYIVEGFHLVEEALKHKDQIVQIIVR----- 55
Query: 139 LLDKVEVPE--GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
D V++P +D + V V+ V K+++ ++S+ + A +
Sbjct: 56 --DGVDLPLLWAIDEVVL--VHVNEAVSKEIAETENSQGVFAHCKQR----------QIS 101
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
E + W ++L++D +QDPGN+GT++RTA A V L G D F+ K+LR+++
Sbjct: 102 EDEQFDW----KKVLLVDAVQDPGNIGTMIRTADAAGIDAVVLGKGSVDAFNPKSLRSAQ 157
Query: 257 GACFQLPIVSG 267
G+ F +P+V G
Sbjct: 158 GSHFHIPVVRG 168
>gi|85373248|ref|YP_457310.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
gi|84786331|gb|ABC62513.1| rRNA methylase [Erythrobacter litoralis HTCC2594]
Length = 270
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 24/211 (11%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNR--SLQERTVRMDCL 137
+ IT SNP VK+ LR+ +R L G + + +R + R D
Sbjct: 4 RQITGFSNPTVKYLRSLREKK-HRKRERKFLAEGLRLLTDARECDRVPEMLVMAERRDPH 62
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
LL +E E + + S ++ K++G + +++ + + TS+ ++D
Sbjct: 63 PLLTALE--EAVTGAGGEVIETSDEILAKITGKSNPQAVAGV-FAEWNTSLSALDRQSAP 119
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
W LV ++DPGNLGT+LRT A GG+ LL C DPFS +A+RAS G
Sbjct: 120 I----W-------LVAQALRDPGNLGTMLRTGDAVGAGGLILLDDCVDPFSVEAVRASMG 168
Query: 258 ACFQLPIVSGSWYHLEVLKDEFQMKLLAGHA 288
A F I W D+F + L +G
Sbjct: 169 AVFTQQIAQARW-------DDFLLWLRSGDG 192
>gi|189485276|ref|YP_001956217.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite
group 1 bacterium phylotype Rs-D17]
gi|170287235|dbj|BAG13756.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [uncultured Termite
group 1 bacterium phylotype Rs-D17]
Length = 255
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 31/187 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S N K L L Q+ R +G V G I EI + RT++
Sbjct: 3 IKSVQNQIFKDALSL-QNKKLRDKNGLFFVEGKKQIYEI------PKNRTIK-------- 47
Query: 142 KVEVPEGLDNISTH---TVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ + E N T+ + +S+ + KLS +S + I AI V +K
Sbjct: 48 QIFISEKYKNDVTNLKNVIMLSNHLFSKLSATKSPQGIMAI-------------VEKKYY 94
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ ++L+ IQDPGNLGT++R+A AF VF+ G D +S+K +RA+ G+
Sbjct: 95 AVEDIIKNSGLFILLENIQDPGNLGTIIRSADAFGAKAVFVSKGSADIYSDKTIRATMGS 154
Query: 259 CFQLPIV 265
F LPI+
Sbjct: 155 IFHLPII 161
>gi|90420557|ref|ZP_01228464.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
gi|90335285|gb|EAS49038.1| RNA methyltransferase [Aurantimonas manganoxydans SI85-9A1]
Length = 291
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 101/233 (43%), Gaps = 19/233 (8%)
Query: 69 DGRKFA---LPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNR 125
DGR FA P VK ++S SNP VK L Q +R G L G + + +
Sbjct: 12 DGRHFAPTRAPGRVKEVSSVSNPIVKDIRALAQKR-HRDETGLFLAEGLKLVGDALDAGW 70
Query: 126 SLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIP 185
+Q L++ E L+ + TV + V++ +++ +EAI P
Sbjct: 71 EIQ-------TLVIARAAAGHEFLEKTAARTVSLGGDVLEA-----NAKVLEAITRRDNP 118
Query: 186 TSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCD 245
+ + + + + I+ LD ++DPGNLGT+LRTA A GV L+ D
Sbjct: 119 QNAVGVFRRRLTPLAKLDVSGRNVIVALDRVRDPGNLGTVLRTADAAGATGVVLIGETVD 178
Query: 246 PFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGN---EEPR 295
PFS + +RA+ G+ F +P+ S + F + H G EPR
Sbjct: 179 PFSLETVRATMGSIFAVPLAKASEAEFLEWRKGFSGLVAGTHMEGAVDYREPR 231
>gi|381199038|ref|ZP_09906190.1| tRNA/rRNA methyltransferase [Sphingobium yanoikuyae XLDN2-5]
Length = 265
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 23/195 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT---TPIREIYNFNRSL-QERTVRM 134
+ IT SNP VK LR+ YR + G L G T RE L +
Sbjct: 2 AREITGFSNPLVKRVRSLREKK-YRKAEGLFLAEGLRILTEAREEGVLPEMLFHAGSTHP 60
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
L L+D +E +G D I T + ++ K+SG +++++ + ++ T + +D N
Sbjct: 61 LALDLIDAIEA-DGGDVIET-----TPDILSKISGKDNAQAVVGVYRDRL-TPLEKLDRN 113
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ W +V ++DPGNLGT+LRT A GG+ L+ C DPFS +++RA
Sbjct: 114 TADI----W-------IVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRA 162
Query: 255 SRGACFQLPIVSGSW 269
S GA F I W
Sbjct: 163 SMGALFTQSITQARW 177
>gi|403237736|ref|ZP_10916322.1| 23S rRNA methyltransferase [Bacillus sp. 10403023]
Length = 249
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 36/200 (18%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S+ NP +K +L + R G+ ++ G + E + ++E L+
Sbjct: 1 MKRIESSKNPQIKQWKRL-HTKKERDKTGTFMIEGFHLVEEALTSDVIIRE-------LI 52
Query: 139 LLDKVEVPE--GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
+ + +++P +DN+S V + VMK++S +S+ + AI
Sbjct: 53 ISETIDIPSSWNVDNLSITIV--TEKVMKEISDTDTSQGVAAI----------------- 93
Query: 197 EADCRSWF----PSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
C + R+L++D +QDPGNLGT++RTA A V + G D ++ K +
Sbjct: 94 ---CEQYTFKEGGHFTRLLLVDAVQDPGNLGTMIRTADAAGIDAVMIGEGTVDVYNSKVV 150
Query: 253 RASRGACFQLPIVSGSWYHL 272
R+++GA F +PIV + + +
Sbjct: 151 RSTQGAIFHIPIVKTNLHEM 170
>gi|218281262|ref|ZP_03487766.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989]
gi|218217546|gb|EEC91084.1| hypothetical protein EUBIFOR_00330 [Eubacterium biforme DSM 3989]
Length = 244
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 31/184 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S +N +K KL Q R LV G ++E YN N +LQE L +L+
Sbjct: 2 IQSINNKKIKEYAKLIQKKE-RDKTNLFLVEGEHMVKEAYNAN-ALQE-------LFILE 52
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+E P I + V+ V+ KLS S+ + + K+ + +
Sbjct: 53 GIECP-----IQFNYETVTQQVLNKLSNQNSNSKMIGVC---------------KKLNLK 92
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
IL+LD +QDPGN+GT+LRTA +F +++ GC D ++ K +++S+GA F
Sbjct: 93 PVKEE--NILLLDNVQDPGNVGTILRTAHSFGIDCIYMSKGCADIYNPKTIQSSQGALFY 150
Query: 262 LPIV 265
+P++
Sbjct: 151 IPVI 154
>gi|170759752|ref|YP_001788451.1| RNA methyltransferase [Clostridium botulinum A3 str. Loch Maree]
gi|169406741|gb|ACA55152.1| RNA methyltransferase, TrmH family [Clostridium botulinum A3 str.
Loch Maree]
Length = 259
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 99/197 (50%), Gaps = 23/197 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S N +K KLR+ YR + S +V G E N S+ + + L L+
Sbjct: 2 ISSKDNQLIKEVRKLREKK-YRTQNKSFIVEGFRFFEEALKSNSSVNKVFIEEKSLNKLE 60
Query: 142 KVEVPEGLDN-ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA-D 199
++ ++N I T+ V S V+K + ++ + I ++ I+ ++E D
Sbjct: 61 ELYKKYNINNDIETYVVNYS--VLKSIGNTENPQGIVSV-----------INYFKREKLD 107
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
++ F +++D +QDPGN+GT++RTA A GV G D ++EK LR++ G+
Sbjct: 108 LQNGF-----YILVDKVQDPGNMGTIIRTAHAAGALGVITTKGTVDIYNEKTLRSTMGSI 162
Query: 260 FQLPIVSGSWYHLEVLK 276
F +PI+ +LEV+K
Sbjct: 163 FYIPIIEDE--NLEVVK 177
>gi|163942296|ref|YP_001647180.1| tRNA/rRNA methyltransferase SpoU [Bacillus weihenstephanensis
KBAB4]
gi|163864493|gb|ABY45552.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus weihenstephanensis
KBAB4]
Length = 254
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R + V G + E +L+ V L+
Sbjct: 1 MKNIDSVQNPRVKQWKKL-QTKKERDNKALFFVEGFHLVEE------ALKAGVVTE--LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 52 VSDQTDLPKDWTVNDVEMYIVPEAIVKVLRETETTQGVFAVC-----------EKHEKEV 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LDG+QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 101 ALTD-----GKFLLLDGLQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 155
Query: 259 CFQLPIVSGS 268
F LP+V G+
Sbjct: 156 IFHLPVVKGN 165
>gi|258645251|ref|ZP_05732720.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470]
gi|260402601|gb|EEW96148.1| RNA methyltransferase, TrmH family [Dialister invisus DSM 15470]
Length = 269
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 34/209 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+++ITS +N +++ ++L+Q YR + L+ G ++ N + + CL+
Sbjct: 1 MEHITSKNNRWIRLAIRLKQKK-YRDKNKMFLMEGLRNAEDVQN------QEISDIVCLV 53
Query: 139 LLDKVE------VPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID 192
++ E + E +N+ V +M+ +SG ++ + I I L+K P +
Sbjct: 54 QSERAENGSVQHIFERGENLHWLFCEVEEPLMRLISGTENGQGI--ILLVKQPYVM---- 107
Query: 193 VNQKEADCRSWFPSIH-RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
D +H + ++LD +QDPGN+G ++RTA A GV L G DP+SEK
Sbjct: 108 ------DYPQLLNGLHGKYVLLDTVQDPGNVGAIIRTAAAAGCSGVLLTKGSADPYSEKV 161
Query: 252 LRASRGACFQLPIVSGSWYH---LEVLKD 277
+R+S G+ +LPI YH +E LK+
Sbjct: 162 VRSSMGSILRLPI-----YHDLDIEFLKE 185
>gi|56421244|ref|YP_148562.1| rRNA methylase [Geobacillus kaustophilus HTA426]
gi|56381086|dbj|BAD76994.1| rRNA methylase [Geobacillus kaustophilus HTA426]
Length = 251
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 31/192 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VK KL R G L+ G + E N L E L+
Sbjct: 1 MKRIESPKNARVKQWKKLLTKKG-RDETGLFLLEGFHLVEEAIKSNAPLVE-------LI 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ ++ VP G + V+ VM+ +S ++ + I A+
Sbjct: 53 VDERTAVPPGWNVTGVPVTIVTEAVMRAISSTETPQGIAAV------------------- 93
Query: 199 DCR---SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
CR + + L++D +QDPGNLGT++RTA + V L GC D ++ K +RA+
Sbjct: 94 -CRQLSTELEGVKTALLIDAVQDPGNLGTMIRTADSAGIDAVILGEGCADLYNPKVVRAT 152
Query: 256 RGACFQLPIVSG 267
+G+ F LP+V G
Sbjct: 153 QGSLFHLPVVKG 164
>gi|342732159|ref|YP_004770998.1| TrmH family RNA methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|417959268|ref|ZP_12602111.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-1]
gi|417964248|ref|ZP_12606005.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-4]
gi|417969134|ref|ZP_12610093.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-co]
gi|418016440|ref|ZP_12656005.1| putative rRNA (adenosine-2'-O-)-methyltransferase [Candidatus
Arthromitus sp. SFB-mouse-NYU]
gi|418372412|ref|ZP_12964504.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|342329614|dbj|BAK56256.1| TrmH family RNA methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|345506775|gb|EGX29069.1| putative rRNA (adenosine-2'-O-)-methyltransferase [Candidatus
Arthromitus sp. SFB-mouse-NYU]
gi|380333783|gb|EIA24299.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-1]
gi|380338382|gb|EIA27281.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-co]
gi|380342081|gb|EIA30526.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|380343125|gb|EIA31537.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-4]
Length = 260
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 26/215 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTV---RMDCLL 138
I+S N F K + L+ + R L+ G + E N ++ V + D
Sbjct: 4 ISSLDNKFFKEIMGLKNKKN-RCKSRLYLIEGIRFVEEAIKNNCEIKYIVVSESKKD--Y 60
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++DK E + L N+ S + K+ ++++ I IA ++I ++ + N+
Sbjct: 61 IIDKFEFQDKLFNVMVF----SDELFGKIKQTENTQGI--IACLRIKDTIIKFNFNE--- 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
I+ ++D IQDPGNLGT++RTA+A GV L+ G D +++K LRA+ G+
Sbjct: 112 -------GIY--FLIDKIQDPGNLGTIIRTAVAVNALGVILMKGSVDLYNDKVLRATMGS 162
Query: 259 CFQLPI-VSGSWYHL-EVLKDEFQMKLLAGHAGGN 291
F++ I S+ L E +K++F++ + H N
Sbjct: 163 IFKININFIESYLELNEFIKNDFKLVIADAHGDNN 197
>gi|323702099|ref|ZP_08113767.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans
DSM 574]
gi|323532981|gb|EGB22852.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum nigrificans
DSM 574]
Length = 264
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 35/195 (17%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIRE-----------IYNFNRSLQER 130
IT+ NP +K+ +L Q + +R +V G + E +Y + ER
Sbjct: 3 ITAAQNPKIKYIRRLAQRN-FREKERKLVVEGVRLVEEALQSGWRTESFVYTYEAVQNER 61
Query: 131 TVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS 190
R LL L + + T +V++ +M +LS ++ + + +A++ P V
Sbjct: 62 GSR---LLELAQRK--------CAQTYQVTAHIMSQLSDTETPQGV--LAVLWQPDYVL- 107
Query: 191 IDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
AD P + ++V+DG+QDPGNLGT++R+A A GV LL G D ++ K
Sbjct: 108 -------ADVLPGQPPL--VVVVDGVQDPGNLGTIVRSADAAGASGVLLLKGTVDIYNPK 158
Query: 251 ALRASRGACFQLPIV 265
+RA+ G+ F LP+V
Sbjct: 159 TIRATMGSLFHLPVV 173
>gi|288553667|ref|YP_003425602.1| RNA methyltransferase [Bacillus pseudofirmus OF4]
gi|288544827|gb|ADC48710.1| RNA methyltransferase, TrmH family [Bacillus pseudofirmus OF4]
Length = 281
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 96/201 (47%), Gaps = 24/201 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VK KL R G L+ G ++ + ++ +L
Sbjct: 31 MKRIDSVKNEQVKGWKKLHTKKG-RDKAGRFLIEG-------FHLVEEALKAKFHIEVIL 82
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ ++ +P + + VS V+K++S ++ + I A+ + P S+ ++
Sbjct: 83 MTEQTVLPLTWEVYENDIIIVSPQVLKEISETETPQGIAAVCAIPAPPSMTTLS------ 136
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L++D +QDPGN+GT++RTA A GV L G D F+ K +RAS+G+
Sbjct: 137 ---------GQFLLIDRVQDPGNIGTMIRTADAAGMTGVVLGEGSVDLFNSKVIRASQGS 187
Query: 259 CFQLPIVSGSWYH-LEVLKDE 278
F +P++ GS +E LK++
Sbjct: 188 IFHMPVIRGSLIEWVEKLKEK 208
>gi|158321000|ref|YP_001513507.1| tRNA/rRNA methyltransferase SpoU [Alkaliphilus oremlandii OhILAs]
gi|158141199|gb|ABW19511.1| tRNA/rRNA methyltransferase (SpoU) [Alkaliphilus oremlandii OhILAs]
Length = 278
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 100/215 (46%), Gaps = 31/215 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSL------QERTVRMD 135
ITS +N +K+ L Q R H V G + E N + +E
Sbjct: 6 ITSETNSIIKYVKSL-QLKKNRMKHMQFTVEGLRIVEECVKHNGDIAYIIYSEEIYSTQG 64
Query: 136 CLLLLDKVEVPEGLDNISTHTV-RVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
LLDK+ ++ +T+ VSS + K+S ++ + I A+ MK N
Sbjct: 65 AEKLLDKIA-------LAGYTLYEVSSQLFSKISTTENPQGIMAVVHMK----------N 107
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ + +S ++LD IQDPGN+GT++RTA + V + G DP++ K LRA
Sbjct: 108 RSLEEIKSQKGKELFFVILDRIQDPGNMGTIIRTAESANADAVIITKGSVDPYNSKTLRA 167
Query: 255 SRGACFQLPIV---SGSWYHLEVLKDEFQMKLLAG 286
+ GA F +PI+ W L+ LK E ++KL+A
Sbjct: 168 TMGAIFHMPIIQCDDDRW--LDDLK-ENEVKLIAA 199
>gi|333923395|ref|YP_004496975.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333748956|gb|AEF94063.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 264
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 35/197 (17%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIRE-----------IYNFNRSLQER 130
IT+ NP +K+ +L Q + +R +V G + E +Y + ER
Sbjct: 3 ITAAQNPKIKYIRRLAQRN-FREKERKLVVEGVRLVEEALQSGWRTESFVYTYEAVQNER 61
Query: 131 TVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS 190
R LL L + + T +V++ +M +LS ++ + + +A++ P V
Sbjct: 62 GSR---LLELAQRK--------CAQTYQVTAHIMSQLSDTETPQGV--LAVLWQPDYVL- 107
Query: 191 IDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
AD P + ++V+DG+QDPGNLGT++R+A A GV LL G D ++ K
Sbjct: 108 -------ADVLPGQPPL--VVVVDGVQDPGNLGTIVRSADAAGASGVVLLKGTVDIYNPK 158
Query: 251 ALRASRGACFQLPIVSG 267
+RA+ G+ F LP+V+
Sbjct: 159 TIRATMGSLFHLPVVTA 175
>gi|418296837|ref|ZP_12908680.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens CCNWGS0286]
gi|355539012|gb|EHH08254.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens CCNWGS0286]
Length = 285
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 103/239 (43%), Gaps = 24/239 (10%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L Q R G+ + G + + +++ L
Sbjct: 14 QVKEVTSLANPIIKDIKALTQKKG-REETGTFMAEGLKLVIDALELGWTIK-------TL 65
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ + TV +V++ S + I +I P V I QK
Sbjct: 66 VYAKAAKGKPLVEQAAVKTVATGGLVLE-----VSEKVIASITRRDNPQMVVGI-FEQKW 119
Query: 198 ADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ P + LD ++DPGNLGT++RTA A GV L+ C DPFS + +RA+
Sbjct: 120 KPLKDIRPEKGETYIALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATM 179
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLCL 315
G+ F P+ S K Q+ ++A H G+ + R++ +AG P+ +
Sbjct: 180 GSVFATPVARASVEEFLSWKKSAQVSVVATHLAGSVDYRKI---------DYAGKPVVI 229
>gi|241889512|ref|ZP_04776811.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC
10379]
gi|241863819|gb|EER68202.1| putative tRNA/rRNA methyltransferase [Gemella haemolysans ATCC
10379]
Length = 251
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 95/182 (52%), Gaps = 24/182 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS SN +K KL+++ + + +G L+ G + E +L + V +++ +
Sbjct: 2 ITSASNKRIKDIQKLKENKNIKK-YGRYLIEGKHLVEE------ALDAKVVEE--IIVSE 52
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
E +D+ ++V+ V+K +S +S+ I IA+ +I +KE D
Sbjct: 53 SFEEYNIVDSFEGDLIKVTDSVLKSISDTITSQGI--IAVCRIV---------KKELDIN 101
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
++ ++L+LD IQDPGNLGT++RTA AF + + L G + +K +R+++G+ F
Sbjct: 102 NY----SKVLILDKIQDPGNLGTIIRTADAFNFDCIILGKGTTSLYGQKVIRSTQGSNFH 157
Query: 262 LP 263
+
Sbjct: 158 ID 159
>gi|240016589|ref|ZP_04723129.1| putative RNA methyltransferase [Neisseria gonorrhoeae FA6140]
Length = 261
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 28/191 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVR 133
+K+I+ST+N ++H +L +R + ++ G ++ R + E +
Sbjct: 1 MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEAKMP 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ +L L V +PE D I + VS ++KK+S + ++ I + L+ IP D
Sbjct: 61 SEEVLKLTAV-LPE--DGIFS----VSDGILKKISSLSCADDI--LTLIDIPLGGTLPD- 110
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
+ DC VLDG+QDPGN+GT+LR+A A G V L GC D +S K LR
Sbjct: 111 ---KGDCA----------VLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR 157
Query: 254 ASRGACFQLPI 264
A GA F L I
Sbjct: 158 AGMGAHFLLDI 168
>gi|423560929|ref|ZP_17537205.1| hypothetical protein II5_00333 [Bacillus cereus MSX-A1]
gi|401202774|gb|EJR09624.1| hypothetical protein II5_00333 [Bacillus cereus MSX-A1]
Length = 265
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+KNI S NP VK KL Q+ R G V G + E +L+ V L+
Sbjct: 12 MKNIDSVQNPRVKQWKKL-QTKKERDKKGLFFVEGFHLVEE------ALKAGIVTE--LI 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P+ V ++K L ++++ + A+ + ++KE
Sbjct: 63 VSDQTDLPKDWTVNDVEMYIVPEAIVKILRETETTQGVFAVC-----------EKHEKEV 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ L+LD +QDPGNLGT++RTA A V L GC D ++ K LR+++G+
Sbjct: 112 ALTD-----GKFLLLDELQDPGNLGTIIRTADAAGIHAVVLGEGCVDVYNSKVLRSTQGS 166
Query: 259 CFQLPIVSGS 268
F+LPIV G+
Sbjct: 167 IFRLPIVKGN 176
>gi|220931406|ref|YP_002508314.1| tRNA/rRNA methyltransferase SpoU [Halothermothrix orenii H 168]
gi|219992716|gb|ACL69319.1| tRNA/rRNA methyltransferase (SpoU) [Halothermothrix orenii H 168]
Length = 270
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG-S 268
IL+LD IQDPGN+GT++RTA+A G+ L G D ++ K +RAS GA F +PI++G S
Sbjct: 119 ILILDRIQDPGNMGTIIRTAVAAGIEGIICLKGSVDIYNLKVIRASMGAIFSIPILTGVS 178
Query: 269 WYHLEVLKDEF 279
+ L+ ++DE+
Sbjct: 179 FKRLQKIRDEY 189
>gi|260892439|ref|YP_003238536.1| tRNA/rRNA methyltransferase SpoU [Ammonifex degensii KC4]
gi|260864580|gb|ACX51686.1| tRNA/rRNA methyltransferase (SpoU) [Ammonifex degensii KC4]
Length = 266
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 88/188 (46%), Gaps = 16/188 (8%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
+ NP VK L+L Q R G LV G + E +L+ VR L
Sbjct: 3 TVLGKHNPRVKALLRLAQKKG-REKAGEFLVEGPHLVAE------ALRHGKVRA-LYLTP 54
Query: 141 DKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
+ PEG + I R V G+ + + + A P V ++ V A
Sbjct: 55 EFASSPEGEELIRKAEARKVEVF-----GL-APQLLARAADTATPQGVLAV-VEMPSASL 107
Query: 201 RSWFP-SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
S + ++++DG+QDPGNLGT++RTA A GV +L G DPF +A+RA+ GA
Sbjct: 108 PSLLQVELPLLVIVDGLQDPGNLGTIVRTAQAVAATGVVVLKGSVDPFHPRAVRATAGAI 167
Query: 260 FQLPIVSG 267
F+LP+V G
Sbjct: 168 FRLPVVKG 175
>gi|420264027|ref|ZP_14766662.1| TrmH family RNA methyltransferase [Enterococcus sp. C1]
gi|394768926|gb|EJF48803.1| TrmH family RNA methyltransferase [Enterococcus sp. C1]
Length = 253
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 26/192 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N F+K KL Q +R + L+ G ++E +LQ + V + LL
Sbjct: 1 MKEIQSKKNTFIKEIKKLTQKK-HRTQTNTYLIDGWHLVQE------ALQAK-VPIKALL 52
Query: 139 LLDK--VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
+ + E LD+ + ++ + LS + + P +F++ V ++
Sbjct: 53 VTPRGLSEANGQLDDYQEESYLITEEIAAMLSDLPT------------PQGIFAV-VEKQ 99
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
E + ++ L+LD +QDPGN+GT++RTA A + GVFL G D +S K LR+ +
Sbjct: 100 EQNLQTL---TGNWLILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSMQ 156
Query: 257 GACFQLPIVSGS 268
G+ + LPI+ G+
Sbjct: 157 GSNYHLPILEGA 168
>gi|325571078|ref|ZP_08146650.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
12755]
gi|325156163|gb|EGC68349.1| TrmH family RNA methyltransferase [Enterococcus casseliflavus ATCC
12755]
Length = 253
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 26/192 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N F+K KL Q +R + L+ G ++E +LQ + V + LL
Sbjct: 1 MKEIQSKKNTFIKEIKKLTQKK-HRTQTNTYLIDGWHLVQE------ALQAK-VPIKALL 52
Query: 139 LLDK--VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
+ + E LD+ + ++ + LS + + P +F++ V ++
Sbjct: 53 VTPRGLSEANGQLDDYQEESYLITEEIAAMLSDLPT------------PQGIFAV-VEKQ 99
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
E + ++ L+LD +QDPGN+GT++RTA A + GVFL G D +S K LR+ +
Sbjct: 100 EQNLQTL---TGNWLILDNVQDPGNVGTMIRTADAAGFSGVFLGEGTADLYSTKVLRSMQ 156
Query: 257 GACFQLPIVSGS 268
G+ + LPI+ G+
Sbjct: 157 GSNYHLPILEGA 168
>gi|404418388|ref|ZP_11000155.1| rRNA methyltransferase [Staphylococcus arlettae CVD059]
gi|403488981|gb|EJY94559.1| rRNA methyltransferase [Staphylococcus arlettae CVD059]
Length = 246
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 94/192 (48%), Gaps = 25/192 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++NITS N +K KL++ R G AL+ G I E + + +++ L
Sbjct: 1 MENITSAQNSKIKQATKLKKKRE-RDKTGLALIEGHHLIEEAF-------KSDIKILQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++++ + + + + ++ V + LS + + A+++ PT D +
Sbjct: 53 MVEQGRLDSQIVDYAETCFEINIKVAEALSDTVTPQGF--FAVIEKPT----YDTTKAT- 105
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++L++D IQDPGNLGTL+RTA A + L G DP+ +K LRAS+G+
Sbjct: 106 ----------QVLLIDRIQDPGNLGTLIRTADAAGLDLIVLEKGTADPYQDKVLRASQGS 155
Query: 259 CFQLPIVSGSWY 270
F LPIV+ +
Sbjct: 156 VFHLPIVTDDLH 167
>gi|395764879|ref|ZP_10445499.1| hypothetical protein MCO_00375 [Bartonella sp. DB5-6]
gi|395413696|gb|EJF80158.1| hypothetical protein MCO_00375 [Bartonella sp. DB5-6]
Length = 284
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 38/245 (15%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SNP +K+ L Q + R+ G + G + + N ++Q L
Sbjct: 9 VKEITSLSNPIIKNLRALNQKKN-RNREGLFMAEGLKLVIDALNLGWTIQT--------L 59
Query: 139 LLDKVEVPE-GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ K ++ ++N + TV V+K S + +E+I P +V I Q
Sbjct: 60 IFSKSKIENTAIENTAARTVANGGFVIKA-----SQKVMESITRRDNPQTVIGIFKQQ-- 112
Query: 198 ADCRSWFP------SIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
W P + + V LD ++DPGNLGT++RTA A GV L+ DPFS +
Sbjct: 113 -----WQPLEMIKEQVGNVYVALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPE 167
Query: 251 ALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAG 310
+RA+ G+ F +P+ F+ ++ H G+ + R + F G
Sbjct: 168 TVRATMGSIFSIPLYRFDESTFLNWSAYFKGMIIGTHLKGSTDYRTI---------DFKG 218
Query: 311 VPLCL 315
P+ L
Sbjct: 219 GPIIL 223
>gi|352517858|ref|YP_004887175.1| putative RNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
gi|348601965|dbj|BAK95011.1| putative RNA methyltransferase [Tetragenococcus halophilus NBRC
12172]
Length = 252
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 22/190 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I + N +K KL+Q YR+ + L+ G + E ++E +
Sbjct: 1 MKEIQAAKNNKIKELKKLQQRK-YRNQSETYLLEGYHLVEEAVKAGVEIKE--------V 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
LD+ + D + H + + S+E++ A++ ++PT I + +KE
Sbjct: 52 YLDERGLQLWQDWVKQHELDYYLL---------SNEAMNALS--ELPTPQGMIALVKKEE 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ + F + L+LD +QDPGN+GT++RTA A + G+FL G D +S K LR+ +G+
Sbjct: 101 NIPADFSG--KWLLLDNVQDPGNVGTIVRTADAAGFDGIFLGKGTADRYSGKVLRSMQGS 158
Query: 259 CFQLPIVSGS 268
F LPI SG+
Sbjct: 159 QFHLPIFSGA 168
>gi|73662967|ref|YP_301748.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
gi|72495482|dbj|BAE18803.1| rRNA methylase [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
Length = 246
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 89/185 (48%), Gaps = 25/185 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N +K+ KL++ R G AL+ G I E Y + +++ L ++D
Sbjct: 4 ITSAQNNKIKNANKLKKKRE-RDKTGLALIEGYHLIEEAY-------KSKIKIQQLYVVD 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ + + + + ++ V + LSG + + A+ I S
Sbjct: 56 ADRIHDDMISYAEEVFEINLKVAEVLSGTVTPQGFFAVIEKPIYES-------------- 101
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+ ++L++D IQDPGNLGTL+RTA A + L G DP+ +K +RAS+G+ F
Sbjct: 102 ---NNAKQVLLIDCIQDPGNLGTLIRTADAAGLDLIVLEKGTADPYQDKVMRASQGSVFH 158
Query: 262 LPIVS 266
+PI++
Sbjct: 159 IPILT 163
>gi|395780487|ref|ZP_10460949.1| hypothetical protein MCW_01036 [Bartonella washoensis 085-0475]
gi|395418833|gb|EJF85150.1| hypothetical protein MCW_01036 [Bartonella washoensis 085-0475]
Length = 275
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 101/227 (44%), Gaps = 29/227 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SNP +K L Q + R+ G + G + + N +Q L
Sbjct: 9 VKEITSLSNPIIKELKALSQKKN-RNREGIFMAEGLKLVIDALNLGWKIQT--------L 59
Query: 139 LLDKVEVPEG-LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ K ++ ++N + HTV +V+K S + +E++ P +V I Q
Sbjct: 60 IFSKSKLGNTVIENTAAHTVASGGIVIK-----ASQKIMESLTRRDNPQAVVGIFKQQ-- 112
Query: 198 ADCRSWFP-------SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
W P S + LD ++DPGNLGT++RTA A G+ L+ DPFS +
Sbjct: 113 -----WQPLEMIKQLSEDVYVALDRVRDPGNLGTIIRTADAVGAKGIILIGETTDPFSPE 167
Query: 251 ALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
+RA+ G+ F +P+ F+ ++ H G+ + R+V
Sbjct: 168 TVRATMGSIFSVPLYRSDEGAFLNWSKGFKGMIVGTHLKGDVDYRRV 214
>gi|385341909|ref|YP_005895780.1| TrmH family RNA methyltransferase [Neisseria meningitidis
M01-240149]
gi|325202115|gb|ADY97569.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
M01-240149]
Length = 261
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 28/187 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVR 133
+K+I+ST+N ++H +L +R + ++ G ++ R + E +
Sbjct: 1 MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEGKMP 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ + L V VPEG VS ++KK+S + ++ + +AL+ IP +
Sbjct: 61 SEEVRRLRAV-VPEG------KVFSVSDGILKKISSLTCADDV--LALIDIPDA------ 105
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
P+ +VLDG+QDPGN+GT+LR+A A G V L GC D +S K LR
Sbjct: 106 --------GALPAGGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR 157
Query: 254 ASRGACF 260
A GA F
Sbjct: 158 AGMGAHF 164
>gi|149183054|ref|ZP_01861507.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1]
gi|148849235|gb|EDL63432.1| RNA methyltransferase, TrmH family protein [Bacillus sp. SG-1]
Length = 253
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 93/194 (47%), Gaps = 26/194 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K + S NP VK KL Q+ R + G+ +V G + E + +QE +L
Sbjct: 1 MKYVQSAKNPQVKQWKKL-QTKKERENSGTYIVEGFHLVEEALKYKGVVQE-------IL 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ + V++P + + +S K +S ++S+ + A+ + E
Sbjct: 53 VKEGVDLPSSWNMDEVSVIALSEDAAKAVSATETSQGVFAVCQQN--------QIGDLEL 104
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+++ L+LD +QDPGNLGT++RTA A + L G D ++ K LR+++G+
Sbjct: 105 QGKTF-------LMLDEVQDPGNLGTIIRTADAAGIDVIVLGEGTADLYNPKVLRSAQGS 157
Query: 259 CFQLPIVSG---SW 269
F LPI+ G SW
Sbjct: 158 HFHLPIIKGNLSSW 171
>gi|373121508|ref|ZP_09535376.1| hypothetical protein HMPREF0982_00305 [Erysipelotrichaceae
bacterium 21_3]
gi|371665526|gb|EHO30691.1| hypothetical protein HMPREF0982_00305 [Erysipelotrichaceae
bacterium 21_3]
Length = 243
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 8/76 (10%)
Query: 198 ADCRSWFPSIH------RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
A CR P H R++VLD +QDPGN+GT++RTA++F + V L CD ++EK
Sbjct: 86 AVCR--MPQYHDAEFGKRVIVLDDVQDPGNVGTIIRTAVSFGYDAVLLSAHSCDVYNEKV 143
Query: 252 LRASRGACFQLPIVSG 267
+R+++GA F +P++ G
Sbjct: 144 IRSTQGALFHIPVIRG 159
>gi|56964446|ref|YP_176177.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16]
gi|56910689|dbj|BAD65216.1| 23S rRNA methyltransferase [Bacillus clausii KSM-K16]
Length = 246
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 92/205 (44%), Gaps = 39/205 (19%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N +K KL S R G L+ G + E + + ++ D
Sbjct: 1 MKRIESVKNERIKAWKKL-HSKKGRDQTGRFLIEGEHLVEEAWKSDWKVETVLTTAD--- 56
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
D P + VS VMK+LS +S + I A+ QK
Sbjct: 57 --DASLFP-------GECIGVSEAVMKELSETKSPQGIVAVC--------------QK-- 91
Query: 199 DCRSWFPSIH---RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
+ W R ++LD +QDPGN+GT++RTA+A GV L GC D F+ K +RA+
Sbjct: 92 --KQWHTPERLKGRFVLLDRVQDPGNVGTIIRTALAADAAGVVLGSGCADLFNAKVIRAT 149
Query: 256 RGACFQLPIVSG---SWYHLEVLKD 277
+GA F LP+ G +W +E LK+
Sbjct: 150 QGALFHLPVYMGDLVTW--IEALKE 172
>gi|303232156|ref|ZP_07318859.1| RNA methyltransferase, TrmH family [Veillonella atypica
ACS-049-V-Sch6]
gi|429759414|ref|ZP_19291913.1| RNA methyltransferase, TrmH family [Veillonella atypica KON]
gi|302513262|gb|EFL55301.1| RNA methyltransferase, TrmH family [Veillonella atypica
ACS-049-V-Sch6]
gi|429179690|gb|EKY20929.1| RNA methyltransferase, TrmH family [Veillonella atypica KON]
Length = 264
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 88/186 (47%), Gaps = 24/186 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL--LL 139
I S N +KH + L+Q YR G V G + +I + DCL +L
Sbjct: 9 IQSKDNKTIKHIISLQQRK-YRQKFGEYTVEGIRAVTDIG-----------KKDCLRSIL 56
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSE-SIEAIALMKIPTSVFSIDVNQKEA 198
+ + + E L+ + VSSV + + S E S+ ++ I +
Sbjct: 57 IRESKRSE-LEPLVQKGFTVSSVYVVQDSIFDKIEHSVNGQGILGIAKKCVN-------- 107
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D S+ + LDG+QDPGNLGT++RTA+A G+FLL G DP++EK +R++ A
Sbjct: 108 DLHSFIVEDGLYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSA 167
Query: 259 CFQLPI 264
+PI
Sbjct: 168 LCNIPI 173
>gi|291542636|emb|CBL15746.1| rRNA methylases [Ruminococcus bromii L2-63]
Length = 260
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 18/186 (9%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
++S N +K+ +KLR+S+ YR G + G +R + S +D +
Sbjct: 4 LSSKDNSNIKNAVKLRKSAKYRRESGLFIAEG---VRICMDAMLS----KAHIDTFFASE 56
Query: 142 KV--EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
K + + N+ ++ + V K + + +ES P + +
Sbjct: 57 KASEKYADDFSNLQKYSDKTFIVSDKIFNQMCDTES---------PQGFLCVIKALDKTA 107
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
C + + L LD +QDPGNLGT+LRTA A G+ L CCD +S K +R S GA
Sbjct: 108 CFDKIKTGDKFLALDNLQDPGNLGTILRTAEALNVTGIVLSADCCDIYSPKVVRGSMGAV 167
Query: 260 FQLPIV 265
F+LP V
Sbjct: 168 FRLPFV 173
>gi|237733780|ref|ZP_04564261.1| tRNA/rRNA methyltransferase [Mollicutes bacterium D7]
gi|365830751|ref|ZP_09372314.1| hypothetical protein HMPREF1021_01078 [Coprobacillus sp. 3_3_56FAA]
gi|229383118|gb|EEO33209.1| tRNA/rRNA methyltransferase [Coprobacillus sp. D7]
gi|365262761|gb|EHM92633.1| hypothetical protein HMPREF1021_01078 [Coprobacillus sp. 3_3_56FAA]
Length = 238
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 91/191 (47%), Gaps = 32/191 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITST+N +K +KL+Q YR + LV G + E +L+ V LL+
Sbjct: 2 ITSTTNSTIKTLMKLKQKK-YRDEMKAYLVEGDHLVTE------ALKANQVE----LLIS 50
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ + + VS VM KL+ +S +SI A M QKE +
Sbjct: 51 TKHI-----DSELEVLEVSEEVMAKLAFTKSPQSIMAKCRM------------QKEIQLK 93
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
R L+LD +QDPGN+GTL+RTA+AF V L C D +++K LR+ +GA F
Sbjct: 94 EG----RRYLLLDDLQDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFH 149
Query: 262 LPIVSGSWYHL 272
L + G+ L
Sbjct: 150 LSCIYGNLTQL 160
>gi|354584792|ref|ZP_09003684.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus lactis 154]
gi|353191343|gb|EHB56850.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus lactis 154]
Length = 269
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 95/206 (46%), Gaps = 35/206 (16%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
I S N VK +L Q +R +V G ++E + ++ C+
Sbjct: 2 EILSPQNARVKSWAQL-QEKKHRDKQNKYVVEGIHLVQEALSSGADVE-------CVAFD 53
Query: 141 DKVEVPEGLDNI-----STHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
+ +P L I + VS V+ K+S S P VF+ V +
Sbjct: 54 IERGIPRELTGIPDTEQGVEWIGVSHAVIAKVSDTPS------------PQPVFA--VVR 99
Query: 196 KEADCRSWFPSIHR----ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
KEA W I R ++VLDG+QDPGN+GT++RTA A GGV L GC D ++ K
Sbjct: 100 KEAG--QWQDLIMREGGLVMVLDGLQDPGNVGTIIRTADAVGAGGVVLGRGCADVYNPKT 157
Query: 252 LRASRGACFQLPIVSGSWYHLEVLKD 277
LR++ G+ F LP++ G LE+L +
Sbjct: 158 LRSTMGSLFHLPVLEGDL--LEILPE 181
>gi|401679903|ref|ZP_10811827.1| RNA methyltransferase, TrmH family [Veillonella sp. ACP1]
gi|400219030|gb|EJO49901.1| RNA methyltransferase, TrmH family [Veillonella sp. ACP1]
Length = 264
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 48/198 (24%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL--LL 139
I S N +KH + L+Q YR G +V G IR + + + DCL +L
Sbjct: 9 IQSKDNKTIKHIISLQQRK-YRQKFGEYMVEG---IRAVTDIGKK--------DCLRSIL 56
Query: 140 LDKVEVPEGLDNISTHTVRVSSV------VMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ + + E L+ + + VSSV + K+ + + I IA
Sbjct: 57 IRESKRSE-LEPLVEKGLTVSSVYVVQDPIFDKIEHSVNGQGILGIA------------- 102
Query: 194 NQKEADCRSWFPSIHRILV-------LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDP 246
+ + +H ++V LDG+QDPGNLGT++RTA+A G+FLL G DP
Sbjct: 103 -------KKYVNDLHSLIVEDGLYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDP 155
Query: 247 FSEKALRASRGACFQLPI 264
++EK +R++ A +PI
Sbjct: 156 YNEKCVRSTMSALCNIPI 173
>gi|423711917|ref|ZP_17686222.1| hypothetical protein MCQ_00786 [Bartonella washoensis Sb944nv]
gi|395412765|gb|EJF79245.1| hypothetical protein MCQ_00786 [Bartonella washoensis Sb944nv]
Length = 277
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 29/227 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SNP +K L Q + R+ G + G I + N +Q L
Sbjct: 9 VKEITSLSNPIIKELKALSQKKN-RNREGIFMAEGLKLIIDALNLGWKIQT--------L 59
Query: 139 LLDKVEVPE-GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ K ++ ++N + HTV V+K S + +E++ P +V I Q
Sbjct: 60 IFSKSKLGNTAVENTAAHTVASGGFVIK-----ASQKIMESLTRRDNPQAVVGIFKQQ-- 112
Query: 198 ADCRSWFP-------SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
W P S + LD ++DPGNLGT++RTA A G+ L+ DPFS +
Sbjct: 113 -----WQPLEMIKQLSEDVYVALDRVRDPGNLGTIIRTADAVGAKGIILIGETTDPFSPE 167
Query: 251 ALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
+RA+ G+ F +P+ F+ ++ H G+ + R+V
Sbjct: 168 TVRATMGSIFSVPLYRSDEGAFLNWSKGFKGMIVGTHLKGDVDYRRV 214
>gi|393718455|ref|ZP_10338382.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas echinoides ATCC
14820]
Length = 267
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 87/196 (44%), Gaps = 25/196 (12%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL- 138
+ IT+ SNP +K LR+ +R G L G + E R Q D
Sbjct: 3 REITAYSNPLIKRVRLLREKR-HRREEGLFLAEGLRILTEAREAGRIPQYLFFARDSAAH 61
Query: 139 -----LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
L+ VE G + ++ KLSG + +++ + + + S+D
Sbjct: 62 PLVQALVADVETAGG------EAIETVPDILSKLSGKDNPQAVVGV-FPEFARDLASLD- 113
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
+ W LV + ++DPGNLGT+LRT A GG+ L+ C DPFS +A+R
Sbjct: 114 ---RSSAAIW-------LVAERLRDPGNLGTILRTGDAVGAGGLILIGECVDPFSVEAVR 163
Query: 254 ASRGACFQLPIVSGSW 269
AS GA F +P+V W
Sbjct: 164 ASMGALFTVPVVQCEW 179
>gi|70726825|ref|YP_253739.1| hypothetical protein SH1824 [Staphylococcus haemolyticus JCSC1435]
gi|68447549|dbj|BAE05133.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 246
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ + R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNSKIKNA-NKLKKKRDRDKTGQALIEGIHLIEEAY-------QSGIAIKQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+++ E L + + T ++ V + LSG + P F++ + + +
Sbjct: 53 VIEPNRTDEALKDYAEETFEINMKVAESLSGTIT------------PQGFFAV-IEKPKY 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D + ++L++D IQDPGNLGTL+RT+ A + + G DP+ +K LRAS+G+
Sbjct: 100 DVKQA----KQVLLIDRIQDPGNLGTLIRTSDAAGIDLIVMEKGTADPYQDKVLRASQGS 155
Query: 259 CFQLPIVS 266
F +P+++
Sbjct: 156 VFHIPVIT 163
>gi|226950562|ref|YP_002805653.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str.
Kyoto]
gi|226840837|gb|ACO83503.1| RNA methyltransferase, TrmH family [Clostridium botulinum A2 str.
Kyoto]
Length = 259
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 97/196 (49%), Gaps = 21/196 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S N +K KLR+ YR + S ++ G E N S+ + + L L+
Sbjct: 2 ISSKDNQLIKEVRKLREKK-YRTQNKSFIIEGFRFFEEALKSNSSVNKVFIEEKSLNKLE 60
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA-DC 200
++ ++N T V+ V+K + ++ + I ++ I+ +KE D
Sbjct: 61 ELYKKYNINN-DIETYVVNYFVLKSIGNTENPQGIVSV-----------INYFKKEKLDL 108
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
++ F +++D +QDPGN+GT++RTA A G+ G D ++EK LR++ G+ F
Sbjct: 109 QNGF-----YILVDKVQDPGNMGTIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMGSIF 163
Query: 261 QLPIVSGSWYHLEVLK 276
+PI+ +LEV+K
Sbjct: 164 YIPIIEDE--NLEVVK 177
>gi|94495543|ref|ZP_01302123.1| rRNA methylase [Sphingomonas sp. SKA58]
gi|94424931|gb|EAT09952.1| rRNA methylase [Sphingomonas sp. SKA58]
Length = 266
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 23/195 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT---TPIREIYNFNRSL-QERTVRM 134
+ IT SNP VK LR+ YR + G L G T RE L T
Sbjct: 2 AREITGFSNPLVKRVRSLREKK-YRKAEGLFLAEGLRILTEAREEGVLPEMLFHAGTAHP 60
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
L L+D +E G D I T + ++ K+SG +++++ + ++ T + ++D
Sbjct: 61 LGLELIDDIEAAGG-DVIVT-----TPDILSKISGKDNAQALVGVYRDRL-TPLAALD-- 111
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ AD W +V ++DPGNLGT+LRT A GG+ L+ C DPFS +++RA
Sbjct: 112 RSSADI--W-------IVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRA 162
Query: 255 SRGACFQLPIVSGSW 269
S GA F I W
Sbjct: 163 SMGALFTQSITQARW 177
>gi|167754583|ref|ZP_02426710.1| hypothetical protein CLORAM_00085 [Clostridium ramosum DSM 1402]
gi|167705415|gb|EDS19994.1| RNA methyltransferase, TrmH family [Clostridium ramosum DSM 1402]
Length = 238
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 91/191 (47%), Gaps = 32/191 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITST+N +K +KL+Q YR + LV G + E +L+ V LL+
Sbjct: 2 ITSTTNSTIKTLMKLKQKK-YRDEMKAYLVEGDHLVTE------ALKANQVE----LLIS 50
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ + + VS VM KL+ +S +SI A M QKE +
Sbjct: 51 TKHI-----DSELEVLEVSEEVMAKLAFTKSPQSIMAKCRM------------QKEIQLK 93
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
R L+LD +QDPGN+GTL+RTA+AF V L C D +++K LR+ +GA F
Sbjct: 94 EG----RRYLLLDDLQDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFH 149
Query: 262 LPIVSGSWYHL 272
L + G+ L
Sbjct: 150 LSCIYGNLTQL 160
>gi|188586434|ref|YP_001917979.1| tRNA/rRNA methyltransferase SpoU [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179351121|gb|ACB85391.1| tRNA/rRNA methyltransferase (SpoU) [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 269
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 180 ALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFL 239
A + P + ++ E D S IL+L +QDPGN+GTL+R+A AF + GV
Sbjct: 87 AFTETPQGILAV-CTFNEGDLESLTSEKKDILILYQVQDPGNMGTLIRSADAFGFQGVVC 145
Query: 240 LPGCCDPFSEKALRASRGACFQLPIVSGSWYH--LEVLKDEFQMKLLAGHAGGNEEPRQV 297
GC DP ++K +R+S G+ F +P+V S +VL+ E Q +L G G+ +P
Sbjct: 146 SKGCVDPTNDKVVRSSMGSLFHIPVVMNSEIDQLFQVLQRE-QYFILFGDKSGS-KPIMT 203
Query: 298 LQLSQELADSFAG 310
+ LS F G
Sbjct: 204 IDLSNTAVALFVG 216
>gi|452995733|emb|CCQ92602.1| RNA methyltransferase, TrmH family, group 3 [Clostridium ultunense
Esp]
Length = 265
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 20/186 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS+SNP +K L + R + S LV G + E + N L + L
Sbjct: 4 ITSSSNPTIKEVKSLYRKKE-RWAKKSFLVEGIKIVEECIDNNYPLSNIIFSHE----LR 58
Query: 142 KVEVPEGL-DNISTHT--VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ EGL I T+ ++V + +++S +++ + + AIA+ K S+ I
Sbjct: 59 SISGGEGLWQKIRTYDQLIKVPDRLYREISDMENPQGVMAIAIFK-QNSIEEI------Y 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D + F +L+LD +QDPGN+GT++RTA AF G+ + GC D ++ K +R++ G+
Sbjct: 112 DKGNPF-----LLLLDQVQDPGNMGTIIRTADAFGIDGIIVTEGCVDIYNPKVVRSTMGS 166
Query: 259 CFQLPI 264
F++PI
Sbjct: 167 IFRVPI 172
>gi|414160423|ref|ZP_11416691.1| hypothetical protein HMPREF9310_01065 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878321|gb|EKS26206.1| hypothetical protein HMPREF9310_01065 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 248
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 87/192 (45%), Gaps = 31/192 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTV----RM 134
++ ITS N VK + R G LV GT I E S+++ V R
Sbjct: 1 MEQITSPQNTKVKQA-NKLKKKKERDKTGLLLVEGTHLIEEAVQSQLSVKQLFVVEPERF 59
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
D L +E E ++ V + LSG + P +F++
Sbjct: 60 DAQL----IEAAE-------EAFHINFKVAESLSGTVT------------PQGIFAV--- 93
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
++ + S ++L+LD IQDPGNLGTL+RTA A + L PG D + +K LR+
Sbjct: 94 IEKPEVASRIAEAKQVLLLDRIQDPGNLGTLIRTADAAALDLIVLAPGTADAYQDKVLRS 153
Query: 255 SRGACFQLPIVS 266
S+G+ F LPIV+
Sbjct: 154 SQGSVFHLPIVT 165
>gi|257440569|ref|ZP_05616324.1| tRNA/rRNA methyltransferase [Faecalibacterium prausnitzii A2-165]
gi|257196892|gb|EEU95176.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
A2-165]
Length = 259
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 25/189 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ +L S ++R S G L G E+ R ++ L
Sbjct: 1 MEKITSRENAKIKYACRLASSGAFRRSEGKFLAEGRKLCPELC--------RGAALETLF 52
Query: 139 LLDKV--EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
+ + PE L + V V KL+ V + + + I T V ++D +
Sbjct: 53 CTEAALEKCPE-LAGLPGEHYLVEDHVADKLADVGTHQGVFGI----FRTPVHTLDEAKT 107
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
R L L+ +QDPGN+GTLLR+A AF + GV L GC F+ K LRAS
Sbjct: 108 GG----------RYLALERVQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASM 157
Query: 257 GACFQLPIV 265
GA ++P++
Sbjct: 158 GAAVRVPVM 166
>gi|374627327|ref|ZP_09699734.1| hypothetical protein HMPREF0978_03054 [Coprobacillus sp.
8_2_54BFAA]
gi|373913350|gb|EHQ45188.1| hypothetical protein HMPREF0978_03054 [Coprobacillus sp.
8_2_54BFAA]
Length = 238
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 89/191 (46%), Gaps = 32/191 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITST+N +K +KL+Q YR + LV G + E N+
Sbjct: 2 ITSTTNSTIKTLMKLKQKK-YRDEMKAYLVEGDHLVTEALKANQ---------------- 44
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
VE+ IST + V++ S E + +A K P S+ + QKE +
Sbjct: 45 -VELL-----ISTKHIDSELEVLE-----VSEEVMAKLAFTKSPQSIIAKCRMQKEIQLK 93
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
R L+LD +QDPGN+GTL+RTA+AF V L C D +++K LR+ +GA F
Sbjct: 94 EG----RRYLLLDDLQDPGNIGTLIRTALAFSIDQVILSNNCVDLYNDKLLRSMQGANFH 149
Query: 262 LPIVSGSWYHL 272
L + G+ L
Sbjct: 150 LSCIYGNLTQL 160
>gi|374709113|ref|ZP_09713547.1| 23S rRNA methyltransferase [Sporolactobacillus inulinus CASD]
Length = 255
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
R L++DG+QDPGNLGTL+RTA AF ++L GC D ++ K LR+++G+ F LP++ +
Sbjct: 108 RFLLVDGVQDPGNLGTLIRTADAFGLNAIYLGDGCVDGYNAKTLRSAQGSHFHLPVIHKN 167
Query: 269 WYHLEVLKDEFQMKLLAGHAGGNE 292
+ L + + L G+E
Sbjct: 168 LFTLADEMKQLNIPLYGSSLQGDE 191
>gi|346314201|ref|ZP_08855722.1| hypothetical protein HMPREF9022_01379 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345906559|gb|EGX76283.1| hypothetical protein HMPREF9022_01379 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 243
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 45/59 (76%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
R++VLD +QDPGN+GT++RTA++F + V L CD ++EK +R+++GA F +P++ G
Sbjct: 101 RVIVLDDVQDPGNVGTIIRTAVSFGYDAVLLSAHSCDVYNEKVIRSTQGALFHIPVIRG 159
>gi|357974852|ref|ZP_09138823.1| tRNA/rRNA methyltransferase [Sphingomonas sp. KC8]
Length = 268
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 86/193 (44%), Gaps = 19/193 (9%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT---TPIREIYNFNRSLQERTVRMDC 136
+ IT+ SNP +K LR+ +R G L G T RE R +
Sbjct: 3 RQITAFSNPLIKRIRSLREKR-HRREEGMFLAEGLRILTEAREAGRIPRYIFFAADSAGH 61
Query: 137 LLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
L+ D + E + T R ++ KLSG + +++ + + T + +ID N
Sbjct: 62 RLVQDLIHAVESTGGEAIETGRD---ILHKLSGKDNPQTVIGV-YDEFATGLDAIDRNTA 117
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
W +V ++DPGNLGT+LRT A GG+ L+ C DPFS +A+RAS
Sbjct: 118 SI----W-------IVAQSMRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVEAVRASM 166
Query: 257 GACFQLPIVSGSW 269
GA F I W
Sbjct: 167 GALFTQHIAQARW 179
>gi|253998852|ref|YP_003050915.1| tRNA/rRNA methyltransferase SpoU [Methylovorus glucosetrophus
SIP3-4]
gi|253985531|gb|ACT50388.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus glucosetrophus
SIP3-4]
Length = 260
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 95/195 (48%), Gaps = 31/195 (15%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIRE---IYNFNRSL---QERTVR 133
K+ITS NP K KL +SS R G L+ G +R+ ++ R L + ++
Sbjct: 4 KHITSRDNPVFKQLKKLAESSRERRRLGQTLLDGPHLLRDYMAVFGTPRQLIIAEGQSTN 63
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
L+ + ++P T+ V++++ +LS V + I +AL+ P
Sbjct: 64 EVNGLIQELADIP---------TLMVTTLMFAELSPVTTPTGI--LALVDTPQLPLP--- 109
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
++ +L+L+ IQDPGNLG++LR+A A V+L GC + +S KALR
Sbjct: 110 -----------ETLEFVLMLEDIQDPGNLGSMLRSAAAAGVQAVYLSEGCAEAWSPKALR 158
Query: 254 ASRGACFQLPIVSGS 268
+GA F LP+V S
Sbjct: 159 GGQGAQFVLPVVERS 173
>gi|254468840|ref|ZP_05082246.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13]
gi|207087650|gb|EDZ64933.1| tRNA/rRNA methyltransferase [beta proteobacterium KB13]
Length = 257
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 179 IALMKIPTSVFS-IDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGV 237
I+ +K P + + I++ Q ++ + ++ L LD +QDPGNLGT+LRT+ A G+
Sbjct: 85 ISELKTPIGILALIEIPQNDSYPNHFHDGMY--LFLDKVQDPGNLGTILRTSQALGHKGI 142
Query: 238 FLLPGCCDPFSEKALRASRGACFQLPI 264
FL C DP+S K LRAS+G FQLPI
Sbjct: 143 FLSEQCADPWSPKTLRASQGFQFQLPI 169
>gi|309778073|ref|ZP_07673012.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
3_1_53]
gi|308914167|gb|EFP59968.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
3_1_53]
Length = 244
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 31/188 (16%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
ITS +N VK K ++ +R LV G I E R ++ +L
Sbjct: 2 EITSLTNAKVKQWAKYKEKK-HREKDQKFLVEGEHLIEE--------AARAGLVEAIL-- 50
Query: 141 DKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALM-KIPTSVFSIDVNQKEAD 199
VE G D + V+ ++KKL S I A+ M + T+ +
Sbjct: 51 --VEAGRGHDFLQYPVYEVTPEILKKLQSSISGTWIMAVCRMPQYNTADYG--------- 99
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
R++VLD +QDPGN+GT++R+A++F + V L CD ++EK +R+++GA
Sbjct: 100 --------ERVIVLDDVQDPGNVGTIIRSALSFGYDAVLLSSHSCDIYNEKVIRSTQGAL 151
Query: 260 FQLPIVSG 267
F +P++ G
Sbjct: 152 FHVPVIRG 159
>gi|313115003|ref|ZP_07800496.1| RNA 2'-O ribose methyltransferase substrate binding
[Faecalibacterium cf. prausnitzii KLE1255]
gi|310622694|gb|EFQ06156.1| RNA 2'-O ribose methyltransferase substrate binding
[Faecalibacterium cf. prausnitzii KLE1255]
Length = 260
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
+ ITS N +K+ +L S+++R S G L G E+ R +++ L
Sbjct: 3 EKITSRENAKIKYACRLSSSAAFRRSEGRFLAEGRKLCPEL--------ARGAQLETLFY 54
Query: 140 LDKV--EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + PE L + V V KL+ V + + + + T V ++D +
Sbjct: 55 TESAMAKCPE-LAGLPGEHYLVEDHVADKLADVGTHQGVFGV----FRTPVHTLDEVKAG 109
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
R L L+ +QDPGN+GTLLR+A AF + GV L GC ++ K LRAS G
Sbjct: 110 G----------RYLALERVQDPGNVGTLLRSAAAFGFDGVILSDGCASVYAPKTLRASMG 159
Query: 258 ACFQLPIV 265
A ++P++
Sbjct: 160 ATVRIPVI 167
>gi|304317237|ref|YP_003852382.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778739|gb|ADL69298.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 256
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 86/185 (46%), Gaps = 23/185 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N +K KL + YR+ V G + E + ++ V DC + LD
Sbjct: 3 ITSEKNDLIKDIKKLSEKK-YRYEKKLFFVEGKNSVFEALKSSFEIKYVLVSEDCDIDLD 61
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
VE + V + KK+S + + I +A++K+P + +
Sbjct: 62 -VE--------KDRLIFVDKGIFKKISDTVTPQMI--MAVVKMP-----------DYNVN 99
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
++LD +QDPGNLGT++R+A AF VF + D ++ KALR++ G+ F
Sbjct: 100 DLIKEDGLYIILDEVQDPGNLGTIIRSADAFNVDAVFTINNTVDVYNPKALRSTMGSIFH 159
Query: 262 LPIVS 266
LP+V+
Sbjct: 160 LPVVN 164
>gi|149185879|ref|ZP_01864194.1| rRNA methylase [Erythrobacter sp. SD-21]
gi|148830440|gb|EDL48876.1| rRNA methylase [Erythrobacter sp. SD-21]
Length = 268
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 91/195 (46%), Gaps = 19/195 (9%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT---TPIREIYNFNRSLQERTVRMDCLL 138
IT SNP VK LR+ +R L G T RE + +L R D
Sbjct: 8 ITGFSNPTVKALRALREKK-HRKRERKFLAEGLRLLTDARECGHVPETLV-LADRRDPHP 65
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
LL +E E ++ + + ++ K++G + +++ + + TS+ ++D + A
Sbjct: 66 LLSALE--ESVEASGGEVIETTPDILAKITGKDNPQAVAGV-FAEFDTSLAALD--RSCA 120
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D W LV ++DPGNLGT+LRT A GG+ L+ C DPFS +A+RAS GA
Sbjct: 121 DI--W-------LVAQALRDPGNLGTMLRTGDAIGAGGLILIDDCADPFSVEAVRASMGA 171
Query: 259 CFQLPIVSGSWYHLE 273
F I W E
Sbjct: 172 VFTQGIAQAEWSEFE 186
>gi|398386285|ref|ZP_10544288.1| rRNA methylase [Sphingobium sp. AP49]
gi|397718653|gb|EJK79239.1| rRNA methylase [Sphingobium sp. AP49]
Length = 266
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 23/195 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT---TPIREIYNFNRSL-QERTVRM 134
+ IT SNP VK LR+ YR + G L G T RE L +
Sbjct: 2 AREITGFSNPLVKRVRSLREKK-YRKAEGLFLAEGLRILTEAREEGVLPEMLFHAGSTHP 60
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
L L+D +E +G D I T + ++ K+SG +++++ + ++ T + +D
Sbjct: 61 LALDLIDAIEA-DGGDVIET-----TPDILSKISGKDNAQAVVGVYRDRL-TPLEKLD-- 111
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ AD W +V ++DPGNLGT+LRT A GG+ L+ C DPFS +++RA
Sbjct: 112 RSTADI--W-------IVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVRA 162
Query: 255 SRGACFQLPIVSGSW 269
S GA F I W
Sbjct: 163 SMGALFTQSITQARW 177
>gi|295100358|emb|CBK97903.1| rRNA methylases [Faecalibacterium prausnitzii L2-6]
Length = 259
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 25/189 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N VK+ +L S ++R + G L G E+ R ++ L
Sbjct: 1 MEKITSRENAKVKYACRLASSGAFRRAEGRFLAEGRKLCPELC--------RGAELETLF 52
Query: 139 LLDKV--EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
+ + PE L + V V KL+ V + + + VF V+
Sbjct: 53 CTESALEKCPE-LSELPGEHYLVEDHVADKLADVGTHQGV---------FGVFRTPVHTL 102
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
E + R L L+ +QDPGN+GTLLR+A AF + GV L GC F+ K LRAS
Sbjct: 103 E-----EVKTGGRYLALERVQDPGNVGTLLRSAAAFGFDGVLLSDGCASVFAPKTLRASM 157
Query: 257 GACFQLPIV 265
GA ++P++
Sbjct: 158 GAAVRIPVI 166
>gi|260583736|ref|ZP_05851484.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC
700633]
gi|260158362|gb|EEW93430.1| RNA methyltransferase, TrmH family [Granulicatella elegans ATCC
700633]
Length = 252
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 25/184 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S N VK+ KL Q+S R + ++ G + E N S+Q V D + +
Sbjct: 4 IRSHQNAMVKNYQKL-QTSKGRKKSEAYMIEGEHLVEEAIQSNISIQRLVVSEDTIQFYE 62
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIA-LMKIPTSVFSIDVNQKEADC 200
K S T+ VS V +KLS Q+++ I AI L K P ++V Q
Sbjct: 63 KW-------TKSYPTMFVSKEVFEKLSMTQTNQGILAIVPLEKKPL----VEVPQG---- 107
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
R L+ D +QDPGNLGT++RTA A + V L GC D +++K +R+ +G+ F
Sbjct: 108 --------RYLLADAVQDPGNLGTIIRTADAAGFDAVVLGEGCVDLYNDKVVRSMQGSQF 159
Query: 261 QLPI 264
+ I
Sbjct: 160 HVAI 163
>gi|397904504|ref|ZP_10505414.1| FIG011178: rRNA methylase [Caloramator australicus RC3]
gi|397162459|emb|CCJ32748.1| FIG011178: rRNA methylase [Caloramator australicus RC3]
Length = 253
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 93/187 (49%), Gaps = 38/187 (20%)
Query: 86 SNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEV 145
+NP +K LKL+Q YR L+ G + E +++E V + + +K+
Sbjct: 5 NNPLIKESLKLKQKK-YRDELNKFLIEGVRFVEE------AIKENFV--EYIFYSNKI-- 53
Query: 146 PEGLDNISTHTV-------RVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
LD+ ++ + V+ V+K+LS ++ + + A+ + + A
Sbjct: 54 ---LDSKYSYILDWDVKKYEVNEDVIKELSDTENPQGVAAVCRKR-----------ENRA 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D + + +++ DG+QDPGNLGT++RT A + ++ G DP++ K LR++ G+
Sbjct: 100 DLKDF------VVIADGVQDPGNLGTIIRTLDAAGADALIIIKGTVDPYNSKTLRSTMGS 153
Query: 259 CFQLPIV 265
F++PIV
Sbjct: 154 IFRVPIV 160
>gi|407408137|gb|EKF31687.1| hypothetical protein MOQ_004484 [Trypanosoma cruzi marinkellei]
Length = 559
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 26/191 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I N ++H ++LRQ+ YR S ++ G +RE++ + + LL+
Sbjct: 109 IDDERNELIQHFVRLRQNPKYRSSKQMMILGGREVLRELFEEGHTPRH-------LLIRG 161
Query: 142 KVEVPE--GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPT--SVFSIDVNQKE 197
EVP + T VRV + ++ V + + I IP + ++ N++
Sbjct: 162 SEEVPSWAKKKGVETEIVRVD----RHIAEVCAPGNDGYIGDFDIPPPPAKENLIANKQR 217
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
D R+LVLD + DPG LGTLLRTA F + + C D + + +RA+RG
Sbjct: 218 FD---------RVLVLDNVDDPGLLGTLLRTAAGFHYDAIITTNHCADIYDHRVVRAARG 268
Query: 258 ACFQ--LPIVS 266
A FQ +PI +
Sbjct: 269 AHFQKAVPIYT 279
>gi|402817996|ref|ZP_10867582.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus alvei DSM 29]
gi|402504508|gb|EJW15037.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus alvei DSM 29]
Length = 277
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 99/207 (47%), Gaps = 36/207 (17%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
+ITS N VK ++L++ +R+ G +V G ++E LQ V D L
Sbjct: 6 SITSIQNNKVKSWVQLKERK-HRNREGLFIVEGIHLVQEA--LRSGLQVDVVAYD----L 58
Query: 141 DKVEVPEGLDNISTHT--------------VRVSSVVMKKLSGVQSSESIEAIALMKIPT 186
+K +P+ L++ H + VS +++K S ++ + + AIA
Sbjct: 59 EK-GIPQELESFHNHAENASPLGRGNNTEWIAVSDAIIRKCSDTETPQPVIAIA------ 111
Query: 187 SVFSIDVNQKEADCRSWFPSIHR-ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCD 245
++ A S S + ++V+DG+QDPGNLGT++RTA A GV + G D
Sbjct: 112 -------HKPSASVDSLLASPNSLVVVVDGVQDPGNLGTIIRTADAVGADGVVIGKGTVD 164
Query: 246 PFSEKALRASRGACFQLPIVSGSWYHL 272
++ K +R++ G+ F LP+V G L
Sbjct: 165 LYNAKTIRSTMGSLFHLPVVEGDLTEL 191
>gi|423713322|ref|ZP_17687582.1| hypothetical protein ME1_00328 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395423363|gb|EJF89558.1| hypothetical protein ME1_00328 [Bartonella vinsonii subsp.
arupensis OK-94-513]
Length = 284
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 24/198 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SNP +K+ L Q + R+ G + G + + N ++Q L
Sbjct: 9 VKEITSLSNPIIKNLRALSQKKN-RNREGLFMAEGLKLVIDALNLGWTIQT--------L 59
Query: 139 LLDKVEVPEG-LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ K ++ ++N + TV V+K S + +E+I P +V I Q +
Sbjct: 60 IFSKSKIGNAAIENTAARTVANGGFVIK-----ASEKVMESITHRDNPQTVVGIFKQQWQ 114
Query: 198 A--DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
+ + ++ + L+ ++DPGNLGT++RTA A GV L+ DPFS + +RA+
Sbjct: 115 SLETIKGRVTDVY--VALERVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPETVRAT 172
Query: 256 RGACFQLPIVSGSWYHLE 273
G+ F +P+ YHL+
Sbjct: 173 MGSIFSIPL-----YHLD 185
>gi|210610310|ref|ZP_03288339.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787]
gi|210152540|gb|EEA83546.1| hypothetical protein CLONEX_00529 [Clostridium nexile DSM 1787]
Length = 257
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 100/209 (47%), Gaps = 23/209 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TSTSNP VK+ L+L++ S R+ +V G E+ Q++ +
Sbjct: 2 VTSTSNPQVKNLLQLQKKSKVRNEEQVFIVEGLRMFMEV------PQDQ---------VK 46
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
KV V E L N + + ++ L+ + + ++ K P + + V Q++ +
Sbjct: 47 KVYVSESLYNKKKEELHLERFPVEVLA----DKVFQHVSDTKTPQGILCV-VKQRKYEIE 101
Query: 202 SWFPSIH-RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
+ +VLD +QDPGNLGT++RTA VF+ C D ++ K +R++ G+ +
Sbjct: 102 DLISKENPHFIVLDNLQDPGNLGTIVRTAEGAGVTAVFMSNDCVDIYNPKTIRSTMGSIY 161
Query: 261 QLPIVSGSWYHLEVLKDEFQMKLLAGHAG 289
++P V L L D+FQ K + +A
Sbjct: 162 RVPFVYVD--DLLALLDKFQKKKVTTYAA 188
>gi|297538778|ref|YP_003674547.1| tRNA/rRNA methyltransferase SpoU [Methylotenera versatilis 301]
gi|297258125|gb|ADI29970.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera versatilis 301]
Length = 261
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 91/196 (46%), Gaps = 39/196 (19%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K+I S N K KL +S R S G L+ G + I + + E +
Sbjct: 4 KHIISRDNSVFKQLKKLADNSRERRSEGQTLLDG---VHLIEAYMATFGEPVM------- 53
Query: 140 LDKVEVPEGLDNISTH----------TVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVF 189
+ +PEG +I T+ + +++ +L+ V S+ I +AL+KIP
Sbjct: 54 ---IIIPEGKSSIEATGLIQTLTEIPTIMLPTLMFAELTPVASATGI--LALVKIP---- 104
Query: 190 SIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
Q A + F L+L+ IQDPGNLG++LRTA A V+L C D +S
Sbjct: 105 -----QLTAPEQPKFA-----LMLEDIQDPGNLGSMLRTAAAAGVEAVYLSTSCTDAWSP 154
Query: 250 KALRASRGACFQLPIV 265
KALR +GA F LPIV
Sbjct: 155 KALRGGQGAQFVLPIV 170
>gi|363899336|ref|ZP_09325845.1| hypothetical protein HMPREF9625_00505 [Oribacterium sp. ACB1]
gi|395208468|ref|ZP_10397709.1| RNA methyltransferase, TrmH family [Oribacterium sp. ACB8]
gi|361958376|gb|EHL11675.1| hypothetical protein HMPREF9625_00505 [Oribacterium sp. ACB1]
gi|394706049|gb|EJF13573.1| RNA methyltransferase, TrmH family [Oribacterium sp. ACB8]
Length = 265
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 28/216 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ I S +N +K +L + + R G + G +R++ + + L
Sbjct: 1 MRRIDSPANALLKEIRELGKKAKKRREEGYFVGEGERLLRDL--------PLSSLVQIFL 52
Query: 139 LLD-KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
D + E+P GL + +S M+ +S +S + I +A +KIPT + E
Sbjct: 53 GEDYRGELPHGLSKEDERIILLSKRAMESISNTESQQGI--VAKLKIPTE------KKAE 104
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
D L+L+ IQDPGNLGT+ RTA A +FL C D FS K LR++ G
Sbjct: 105 GDF---------FLLLEDIQDPGNLGTIFRTAEAAGVSHIFLSRNCTDLFSPKVLRSTMG 155
Query: 258 ACFQLPIVSGSWYH-LEVLKDEFQMKLLAGHAGGNE 292
+ F++P G+ +E LK + + A H G E
Sbjct: 156 SLFRVPFSIGNLLSTVEELKKK-GVTFYAMHLAGRE 190
>gi|283769024|ref|ZP_06341930.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
gi|283104381|gb|EFC05758.1| RNA methyltransferase, TrmH family [Bulleidia extructa W1219]
Length = 235
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 63/108 (58%), Gaps = 17/108 (15%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGI 216
+ V+ ++KKL QS+ I I L ++P +KE + ++++LD I
Sbjct: 59 ILVTEAILKKLKISQST--IHRIGLCQMP------HFEKKE---------VKKVILLDEI 101
Query: 217 QDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
QDPGNLGT++RTA +F + V+ CCD F+ K ++AS+GA F +P+
Sbjct: 102 QDPGNLGTIIRTAKSFGYEAVYCSENCCDAFNPKCVQASQGAIFSIPV 149
>gi|384455569|ref|YP_005668164.1| TrmH family RNA methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-Yit]
gi|346983912|dbj|BAK79588.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-mouse-Yit]
Length = 245
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 83/155 (53%), Gaps = 20/155 (12%)
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++DK E + L N+ S + K+ ++++ I IA ++I ++ + N+
Sbjct: 46 IIDKFEFQDKLFNVMVF----SDELFGKIKQTENTQGI--IACLRIKDTIIKFNFNE--- 96
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
I+ ++D IQDPGNLGT++RTA+A GV L+ G D +++K LRA+ G+
Sbjct: 97 -------GIY--FLIDKIQDPGNLGTIIRTAVAVNALGVILMKGSVDLYNDKVLRATMGS 147
Query: 259 CFQLPI-VSGSWYHL-EVLKDEFQMKLLAGHAGGN 291
F++ I S+ L E +K++F++ + H N
Sbjct: 148 IFKININFIESYLELNEFIKNDFKLVIADAHGDNN 182
>gi|260752268|ref|YP_003225161.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|397675913|ref|YP_006517451.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
ATCC 29191]
gi|258551631|gb|ACV74577.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|395396602|gb|AFN55929.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 268
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 27/197 (13%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
+ IT+ SNP +K LR +R G L G + E + + + +
Sbjct: 3 RAITAFSNPLIKRVRSLR-DKKHRREEGLFLAEGLRILTE------AREAGFIPVYIFFA 55
Query: 140 LDKVEVP------EGLDNISTHTVRVSSVVMKKLSGVQSSESIEAI-ALMKIPTSVFSID 192
D P E +++ + S ++ KLSG + +++ + +P S SID
Sbjct: 56 ADSAAHPLVQQLIEAVEDKGGEAIETSRDILHKLSGKDNPQTVIGVFESFTLPLS--SID 113
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
Q W LV ++DPGNLGTLLRT A GG+ L+ C DPFS +A+
Sbjct: 114 RRQAPI----W-------LVAQSLRDPGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAV 162
Query: 253 RASRGACFQLPIVSGSW 269
RA+ GA F I + W
Sbjct: 163 RATMGALFTQKIATARW 179
>gi|349573768|ref|ZP_08885741.1| TrmH family RNA methyltransferase [Neisseria shayeganii 871]
gi|348014724|gb|EGY53595.1| TrmH family RNA methyltransferase [Neisseria shayeganii 871]
Length = 261
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 88/201 (43%), Gaps = 42/201 (20%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSA-----------LVVGTTPIREIYNFNRSL 127
+ ++S NP +KH KL QS R HG A L G P++ +R
Sbjct: 1 MNTLSSAQNPALKHLAKLLQSGRARRQHGQAVFEGVHLLSACLDSGIRPLKVYVPAHRFS 60
Query: 128 QERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEA-IALMKIPT 186
Q T + L + V V+V ++K++ + +E I A IAL +P
Sbjct: 61 QPETSALLARLAANDV-------------VQVGGEALQKITSLTDAEEITALIALPPVPA 107
Query: 187 SVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDP 246
ADC +VL+ IQDPGN+GT+LR+A A V L GC D
Sbjct: 108 F-------DGGADC----------VVLERIQDPGNIGTILRSAAAAGVKQVVLDKGCADI 150
Query: 247 FSEKALRASRGACFQLPIVSG 267
+S K LRA GA F L + SG
Sbjct: 151 WSPKVLRAGMGAHFLLQLHSG 171
>gi|303228816|ref|ZP_07315630.1| RNA methyltransferase, TrmH family [Veillonella atypica
ACS-134-V-Col7a]
gi|302516528|gb|EFL58456.1| RNA methyltransferase, TrmH family [Veillonella atypica
ACS-134-V-Col7a]
Length = 264
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 22/185 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREI--YNFNRSLQERTVRMDCLLL 139
I S N +KH + L+Q YR G V G + +I +F RS+ R + L
Sbjct: 9 IQSKDNKTIKHIISLQQRK-YRQKFGEYTVEGIRAVTDIGKKDFLRSILIRESKRSELEP 67
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
L V +G S + V+ + K+ + + I IA + D
Sbjct: 68 L----VQKGFTVSSVYVVQ--DPIFDKIEHSVNGQGILGIA-------------KKCVND 108
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
S + LDG+QDPGNLGT++RTA+A G+FLL G DP++EK +R++ A
Sbjct: 109 LHSLIVEDGLYVALDGVQDPGNLGTIIRTAVAAGAKGIFLLKGTVDPYNEKCVRSTMSAL 168
Query: 260 FQLPI 264
+PI
Sbjct: 169 CNIPI 173
>gi|257869609|ref|ZP_05649262.1| RNA methyltransferase [Enterococcus gallinarum EG2]
gi|257803773|gb|EEV32595.1| RNA methyltransferase [Enterococcus gallinarum EG2]
Length = 255
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 31/193 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N +K KL Q YR+ + ++ G ++E + ++ L
Sbjct: 4 MKEILSKKNILIKEVKKLAQKK-YRNQTNTYIIDGWHLVQEAI-------AASAPINYLF 55
Query: 139 LLDK--VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ- 195
+ DK E L + R+S V LS + + P +F++ +
Sbjct: 56 VTDKGIQETGNQLKDYQDKVFRISDEVAAFLSDLPT------------PQGIFAVIEKET 103
Query: 196 -KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+E +W L+LD +QDPGN+GT++RTA A + GVFL G D +S K LR+
Sbjct: 104 VQETIHGNW-------LILDNVQDPGNVGTMIRTADAAGFAGVFLGTGTADRYSTKVLRS 156
Query: 255 SRGACFQLPIVSG 267
+G+ F LPI+ G
Sbjct: 157 MQGSNFHLPILEG 169
>gi|357050805|ref|ZP_09112001.1| hypothetical protein HMPREF9478_01984 [Enterococcus saccharolyticus
30_1]
gi|355380430|gb|EHG27566.1| hypothetical protein HMPREF9478_01984 [Enterococcus saccharolyticus
30_1]
Length = 252
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 31/193 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N +K KL Q YR+ + ++ G ++E + ++ L
Sbjct: 1 MKEILSKKNILIKEVKKLAQKK-YRNQTNTYIIDGWHLVQEAI-------AASAPINYLF 52
Query: 139 LLDK--VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ- 195
+ DK E L + R+S V LS + + P +F++ +
Sbjct: 53 VTDKGIQETGNQLKDYQDKVFRISDEVAAFLSDLPT------------PQGIFAVIEKET 100
Query: 196 -KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+E +W L+LD +QDPGN+GT++RTA A + GVFL G D +S K LR+
Sbjct: 101 VQETIHGNW-------LILDNVQDPGNVGTMIRTADAAGFAGVFLGTGTADRYSTKVLRS 153
Query: 255 SRGACFQLPIVSG 267
+G+ F LPI+ G
Sbjct: 154 MQGSNFHLPILEG 166
>gi|121634880|ref|YP_975125.1| RNA methyltransferase [Neisseria meningitidis FAM18]
gi|385340079|ref|YP_005893951.1| TrmH family RNA methyltransferase [Neisseria meningitidis G2136]
gi|416204460|ref|ZP_11620290.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
961-5945]
gi|433467286|ref|ZP_20424741.1| spoU rRNA Methylase family protein [Neisseria meningitidis 87255]
gi|433494696|ref|ZP_20451764.1| spoU rRNA Methylase family protein [Neisseria meningitidis NM762]
gi|433496861|ref|ZP_20453900.1| spoU rRNA Methylase family protein [Neisseria meningitidis M7089]
gi|433498926|ref|ZP_20455935.1| spoU rRNA Methylase family protein [Neisseria meningitidis M7124]
gi|433500891|ref|ZP_20457877.1| spoU rRNA Methylase family protein [Neisseria meningitidis NM174]
gi|120866586|emb|CAM10337.1| putative RNA methyltransferase [Neisseria meningitidis FAM18]
gi|325142380|gb|EGC64789.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
961-5945]
gi|325198323|gb|ADY93779.1| RNA methyltransferase, TrmH family [Neisseria meningitidis G2136]
gi|432202728|gb|ELK58786.1| spoU rRNA Methylase family protein [Neisseria meningitidis 87255]
gi|432229899|gb|ELK85578.1| spoU rRNA Methylase family protein [Neisseria meningitidis NM762]
gi|432233973|gb|ELK89596.1| spoU rRNA Methylase family protein [Neisseria meningitidis M7089]
gi|432234760|gb|ELK90380.1| spoU rRNA Methylase family protein [Neisseria meningitidis M7124]
gi|432236182|gb|ELK91791.1| spoU rRNA Methylase family protein [Neisseria meningitidis NM174]
Length = 261
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 40/193 (20%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT-----------TPIREIYNFNRSL 127
+K+I+ST+N ++H +L +R + ++ G P+ +
Sbjct: 1 MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGMPVGVYIPEGKMP 60
Query: 128 QERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTS 187
E R+ + VPEG VS ++KK+S + ++ I +AL+ IP
Sbjct: 61 SEEIRRL-------RAVVPEG------RIFSVSDGILKKISSLSCADDI--LALIDIPLG 105
Query: 188 VFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPF 247
D + DC +VLDG+QDPGN+GT+LR+A A G V L GC D +
Sbjct: 106 GTLPD----KGDC----------VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAW 151
Query: 248 SEKALRASRGACF 260
S K LRA GA F
Sbjct: 152 SPKVLRAGMGAHF 164
>gi|256005539|ref|ZP_05430500.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum DSM 2360]
gi|385778389|ref|YP_005687554.1| TrmH family RNA methyltransferase [Clostridium thermocellum DSM
1313]
gi|419721303|ref|ZP_14248468.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum AD2]
gi|419724385|ref|ZP_14251451.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum YS]
gi|255990519|gb|EEU00640.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum DSM 2360]
gi|316940069|gb|ADU74103.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum DSM 1313]
gi|380772207|gb|EIC06061.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum YS]
gi|380782683|gb|EIC12316.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum AD2]
Length = 267
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 28/190 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS NP +K L+Q YR + G + E +L+E V+++ +L+ D
Sbjct: 4 ITSAQNPIIKEVKSLKQKK-YREEKKLFFIEGIRFVEE------ALKE-GVQIERILVSD 55
Query: 142 KV-------EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
K+ E+ + + N ++ + ++S Q+ + I A+ MK
Sbjct: 56 KLAETNSGYEILKKVSNGGYPVFQLPHKLFMEISDTQNPQGILAVLSMK----------- 104
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
D + + ++LD +QDPGN+GT++RTA A GV + GC D ++ K LR+
Sbjct: 105 --NCDIEDVWDEKNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKVLRS 162
Query: 255 SRGACFQLPI 264
+ G+ F +PI
Sbjct: 163 TMGSIFHIPI 172
>gi|56552224|ref|YP_163063.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
ZM4]
gi|384410965|ref|YP_005620330.1| tRNA/rRNA methyltransferase SpoU [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|56543798|gb|AAV89952.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis ZM4]
gi|335931339|gb|AEH61879.1| tRNA/rRNA methyltransferase (SpoU) [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 268
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 87/197 (44%), Gaps = 27/197 (13%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
+ IT+ SNP +K LR +R G L G + E + + + +
Sbjct: 3 RAITAFSNPLIKRVRSLR-DKKHRREEGLFLAEGLRILTE------AREAGFIPVYIFFA 55
Query: 140 LDKVEVP------EGLDNISTHTVRVSSVVMKKLSGVQSSESIEAI-ALMKIPTSVFSID 192
D P E +++ + S ++ KLSG + +++ + +P S SID
Sbjct: 56 ADSAAHPLVQQLIEAVEDNGGEAIETSRDILHKLSGKDNPQTVIGVFESFTLPLS--SID 113
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
Q W LV ++DPGNLGTLLRT A GG+ L+ C DPFS +A+
Sbjct: 114 RRQAPI----W-------LVAQSLRDPGNLGTLLRTGDAVGAGGLILIDDCVDPFSVEAV 162
Query: 253 RASRGACFQLPIVSGSW 269
RA+ GA F I + W
Sbjct: 163 RATMGALFTQKIATARW 179
>gi|284045070|ref|YP_003395410.1| tRNA/rRNA methyltransferase SpoU [Conexibacter woesei DSM 14684]
gi|283949291|gb|ADB52035.1| tRNA/rRNA methyltransferase (SpoU) [Conexibacter woesei DSM 14684]
Length = 245
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 40/56 (71%)
Query: 213 LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
L GI DPGN+GT+LR+A+AF V L PGC DPF KA+RAS GA FQ+P+ S
Sbjct: 101 LHGIADPGNVGTVLRSALAFGAASVALGPGCADPFGPKAVRASMGAVFQVPLARAS 156
>gi|125973737|ref|YP_001037647.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
gi|281417893|ref|ZP_06248913.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum JW20]
gi|125713962|gb|ABN52454.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum ATCC 27405]
gi|281409295|gb|EFB39553.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum JW20]
Length = 267
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 28/190 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS NP +K L+Q YR + G + E +L+E V+++ +L+ D
Sbjct: 4 ITSAQNPIIKEVKSLKQKK-YREEKKLFFIEGIRFVEE------ALKE-GVQIERILVSD 55
Query: 142 KV-------EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
K+ E+ + + N ++ + ++S Q+ + I A+ MK
Sbjct: 56 KLAETNSGYEILKKVSNGGYPVFQLPHKLFMEISDTQNPQGILAVLSMK----------- 104
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
D + + ++LD +QDPGN+GT++RTA A GV + GC D ++ K LR+
Sbjct: 105 --NCDIEDVWDEKNFFVILDSVQDPGNMGTIIRTADAAGMTGVIVSKGCVDVYNPKVLRS 162
Query: 255 SRGACFQLPI 264
+ G+ F +PI
Sbjct: 163 TMGSIFHIPI 172
>gi|269797956|ref|YP_003311856.1| tRNA/rRNA methyltransferase SpoU [Veillonella parvula DSM 2008]
gi|269094585|gb|ACZ24576.1| tRNA/rRNA methyltransferase (SpoU) [Veillonella parvula DSM 2008]
Length = 264
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 31/191 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFN-------RSLQERTVRM 134
I S N +K + LRQ + R +G +V G IR+I R + + +
Sbjct: 4 IQSKDNKTIKRIISLRQRKN-RQKNGEYIVEGIRSIRDIAAMGAVKTIVIRESKAQDKNI 62
Query: 135 DCLLLLDKVE-VPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
LL LD V+ VP+ + V K+ + + + AI V
Sbjct: 63 LDLLDLDTVQSVPKYI---------AQDPVFDKVDNTVNGQGVVAI-------------V 100
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
++ D S + LDG+QDPGNLGT++RTA+A G+FL+ G DPF++K +R
Sbjct: 101 SKPTYDIESISIVDGLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVR 160
Query: 254 ASRGACFQLPI 264
++ A ++P+
Sbjct: 161 STMSALHKIPL 171
>gi|296284434|ref|ZP_06862432.1| tRNA/rRNA methyltransferase [Citromicrobium bathyomarinum JL354]
Length = 267
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 89/193 (46%), Gaps = 19/193 (9%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT---TPIREIYNFNRSLQERTVRMDC 136
+ ITS SNP +K LR+ +R L G T RE L + R D
Sbjct: 4 REITSYSNPTIKALRSLREKK-HRQRERRFLAEGLRLLTDARESGRVPEVLVMASKR-DP 61
Query: 137 LLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
L+D +E ++ + + ++ K++G + +++ A A + TS+ ID N
Sbjct: 62 HPLIDALE--HAVEAAGGDVIETTPDILSKITGKDNPQAV-AGAFAEWDTSLDRIDRNAA 118
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
W LV ++DPGNLGT+LRTA A GG+ L+ C DPF +A+RAS
Sbjct: 119 PI----W-------LVAQALRDPGNLGTMLRTADAVGAGGLILIDDCADPFGVEAVRASM 167
Query: 257 GACFQLPIVSGSW 269
GA F + W
Sbjct: 168 GAIFTQNLARARW 180
>gi|350270976|ref|YP_004882284.1| RNA methyltransferase [Oscillibacter valericigenes Sjm18-20]
gi|348595818|dbj|BAK99778.1| RNA methyltransferase [Oscillibacter valericigenes Sjm18-20]
Length = 255
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 83/184 (45%), Gaps = 24/184 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S NP KL +R G L +P L E +R
Sbjct: 4 ISSRKNPLCLRLRKLAADGKFRRETGCFLC--DSP---------KLAEEALRW------- 45
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEA-IALMKIPTSVFSIDVNQKEADC 200
PE +D + T + + + V+ E + A +A K P V ++ +EA
Sbjct: 46 ---APETVDAVVTTPGQKLGELPYSVRVVEVPEDVMASVAPSKTPQGVLAV-CRMREAAL 101
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
R +VLDG+QDPGN+GT+LRTA AF G+FL+ GC D + + LRAS GA F
Sbjct: 102 PEGLDG-SRYVVLDGVQDPGNVGTILRTADAFWADGLFLVNGCADLYHPRTLRASMGAVF 160
Query: 261 QLPI 264
+ P+
Sbjct: 161 RCPV 164
>gi|56478867|ref|YP_160456.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1]
gi|56314910|emb|CAI09555.1| tRNA/rRNA methyltransferase [Aromatoleum aromaticum EbN1]
Length = 261
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 23/187 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K ITS NP VK L S+ R S G L+ G +R + L+E L
Sbjct: 1 MKTITSRDNPAVKRLHALAHSARDRRSEGRTLLDGAHLVRAALDAGWPLRELVASDQGL- 59
Query: 139 LLDKVEVPEGLDNIS-THTVRVSSVVMKKLSGVQSSESIEAIALMKIP--TSVFSIDVNQ 195
+ E+ + L+ + + ++ + +S V + + A+ + +P T F+
Sbjct: 60 --GRAEIADLLERCTGVPAIHLTDALFAHVSPVDTPSGLLAVIDLPVPPPTRAFA----- 112
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
+LVLDG+QD GNLGT+LRTA A V L PGC +S + LRA
Sbjct: 113 ------------ESLLVLDGVQDAGNLGTILRTAAAAGMRDVLLTPGCAQAWSPRVLRAG 160
Query: 256 RGACFQL 262
G F L
Sbjct: 161 MGGHFCL 167
>gi|312143805|ref|YP_003995251.1| tRNA/rRNA methyltransferase SpoU [Halanaerobium hydrogeniformans]
gi|311904456|gb|ADQ14897.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium hydrogeniformans]
Length = 267
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 7/99 (7%)
Query: 185 PTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCC 244
P + +I V + +F + +IL+LD IQDPGN+GT++RTA A + V L G
Sbjct: 94 PQGIIAI-VKEPNYSSEKFFKTADKILLLDRIQDPGNMGTMIRTAAAAGFEAVIALKGSV 152
Query: 245 DPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKL 283
D +++K +RAS G F +PI W +V K+EF+ L
Sbjct: 153 DIYNQKVIRASMGGIFAIPI----WQ--KVSKNEFKKDL 185
>gi|309782123|ref|ZP_07676853.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA]
gi|404377815|ref|ZP_10982915.1| hypothetical protein HMPREF0989_03588 [Ralstonia sp. 5_2_56FAA]
gi|308919189|gb|EFP64856.1| RNA methyltransferase, TrmH family [Ralstonia sp. 5_7_47FAA]
gi|348612884|gb|EGY62491.1| hypothetical protein HMPREF0989_03588 [Ralstonia sp. 5_2_56FAA]
Length = 260
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 31/213 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVR 133
+K+ITS N KH L S+ +R G +++ G + + + ER +R
Sbjct: 1 MKHITSRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVAAYLDAGHMPAQCLVSERHIR 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTV-RVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID 192
EV LD + TV ++ + +L+ V + ++ +AL++ P
Sbjct: 61 --------HPEVAAVLDRVDPDTVILLADNLFGQLTTVVNG--VDLMALVETPEGKLPQT 110
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
+ +ADC ++LDGIQD GN+G++LR A A VF+ PGC +S K L
Sbjct: 111 I---DADC----------VILDGIQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTL 157
Query: 253 RASRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
RA+ GA F L IV + E + Q+ LLA
Sbjct: 158 RAAMGAHFHLNIVEHCTF--ESVHSRLQVPLLA 188
>gi|385338028|ref|YP_005891901.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA
Gm2251 2'-O-methyltransferase) [Neisseria meningitidis
WUE 2594]
gi|416161614|ref|ZP_11606522.1| RNA methyltransferase, TrmH family [Neisseria meningitidis N1568]
gi|421559134|ref|ZP_16005009.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 92045]
gi|433473561|ref|ZP_20430922.1| spoU rRNA Methylase family protein [Neisseria meningitidis 97021]
gi|433475698|ref|ZP_20433036.1| spoU rRNA Methylase family protein [Neisseria meningitidis 88050]
gi|433482124|ref|ZP_20439384.1| spoU rRNA Methylase family protein [Neisseria meningitidis 2006087]
gi|433484106|ref|ZP_20441332.1| spoU rRNA Methylase family protein [Neisseria meningitidis 2002038]
gi|433486325|ref|ZP_20443521.1| spoU rRNA Methylase family protein [Neisseria meningitidis 97014]
gi|433513483|ref|ZP_20470274.1| spoU rRNA Methylase family protein [Neisseria meningitidis 63049]
gi|433515722|ref|ZP_20472491.1| spoU rRNA Methylase family protein [Neisseria meningitidis 2004090]
gi|433517549|ref|ZP_20474295.1| spoU rRNA Methylase family protein [Neisseria meningitidis 96023]
gi|433524205|ref|ZP_20480866.1| spoU rRNA Methylase family protein [Neisseria meningitidis 97020]
gi|433528231|ref|ZP_20484840.1| spoU rRNA Methylase family protein [Neisseria meningitidis NM3652]
gi|433530430|ref|ZP_20487019.1| spoU rRNA Methylase family protein [Neisseria meningitidis NM3642]
gi|433532658|ref|ZP_20489223.1| spoU rRNA Methylase family protein [Neisseria meningitidis 2007056]
gi|433534353|ref|ZP_20490895.1| spoU rRNA Methylase family protein [Neisseria meningitidis 2001212]
gi|254671869|emb|CBA04093.1| putative RNA methyltransferase [Neisseria meningitidis alpha275]
gi|319410442|emb|CBY90802.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase (23S rRNA
Gm2251 2'-O-methyltransferase) [Neisseria meningitidis
WUE 2594]
gi|325128267|gb|EGC51152.1| RNA methyltransferase, TrmH family [Neisseria meningitidis N1568]
gi|402336529|gb|EJU71789.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 92045]
gi|432209350|gb|ELK65318.1| spoU rRNA Methylase family protein [Neisseria meningitidis 88050]
gi|432209859|gb|ELK65825.1| spoU rRNA Methylase family protein [Neisseria meningitidis 97021]
gi|432215917|gb|ELK71800.1| spoU rRNA Methylase family protein [Neisseria meningitidis 2006087]
gi|432220792|gb|ELK76609.1| spoU rRNA Methylase family protein [Neisseria meningitidis 2002038]
gi|432222138|gb|ELK77937.1| spoU rRNA Methylase family protein [Neisseria meningitidis 97014]
gi|432248047|gb|ELL03481.1| spoU rRNA Methylase family protein [Neisseria meningitidis 63049]
gi|432253139|gb|ELL08484.1| spoU rRNA Methylase family protein [Neisseria meningitidis 2004090]
gi|432253285|gb|ELL08629.1| spoU rRNA Methylase family protein [Neisseria meningitidis 96023]
gi|432259449|gb|ELL14720.1| spoU rRNA Methylase family protein [Neisseria meningitidis 97020]
gi|432265032|gb|ELL20228.1| spoU rRNA Methylase family protein [Neisseria meningitidis NM3652]
gi|432266937|gb|ELL22118.1| spoU rRNA Methylase family protein [Neisseria meningitidis NM3642]
gi|432267765|gb|ELL22940.1| spoU rRNA Methylase family protein [Neisseria meningitidis 2007056]
gi|432271954|gb|ELL27071.1| spoU rRNA Methylase family protein [Neisseria meningitidis 2001212]
Length = 261
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 28/193 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVR 133
+K+I+ST+N ++H +L +R + ++ G ++ R + E +
Sbjct: 1 MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEGKMP 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ + L V VPEG VS ++KK+S + ++ + +AL+ IP +
Sbjct: 61 SEEVRRLRAV-VPEG------KVFSVSDGILKKISSLTCADDV--LALIDIPDA------ 105
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
P+ +VLDG+QDPGN+GT+LR+A A G V L G D +S K LR
Sbjct: 106 --------GALPAGGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLR 157
Query: 254 ASRGACFQLPIVS 266
A GA F L I S
Sbjct: 158 AGMGAHFLLDIYS 170
>gi|395778904|ref|ZP_10459415.1| hypothetical protein MCU_01116 [Bartonella elizabethae Re6043vi]
gi|423714752|ref|ZP_17688976.1| hypothetical protein MEE_00177 [Bartonella elizabethae F9251]
gi|395417079|gb|EJF83431.1| hypothetical protein MCU_01116 [Bartonella elizabethae Re6043vi]
gi|395430971|gb|EJF96999.1| hypothetical protein MEE_00177 [Bartonella elizabethae F9251]
Length = 282
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 29/195 (14%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK ITS SNP +K L Q + R+ G + G + + N ++Q
Sbjct: 8 RVKEITSLSNPIIKDLKALSQKKN-RNREGLFMAEGLKLVIDALNLGWTIQT-------- 58
Query: 138 LLLDKVEVPEG-LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
L+ K E+ ++N + V V+K S + +E++ P +V I QK
Sbjct: 59 LIFSKSEIGNATIENTAARAVANGGFVIK-----ASQKVMESLTRRDNPQTVIGI-FRQK 112
Query: 197 EADCRSWFP-------SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
W P + + LD ++DPGNLGT++RTA A GV L+ DPFS
Sbjct: 113 ------WQPLEMIKGQAKDVYIALDRVRDPGNLGTIIRTADAVGAKGVLLIGETTDPFSP 166
Query: 250 KALRASRGACFQLPI 264
+A+RA+ G+ F +P+
Sbjct: 167 EAVRATMGSIFSIPL 181
>gi|222151576|ref|YP_002560732.1| rRNA methyltransferase [Macrococcus caseolyticus JCSC5402]
gi|222120701|dbj|BAH18036.1| rRNA methyltransferase homolog [Macrococcus caseolyticus JCSC5402]
Length = 246
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S N +K KL R ++ G + E N N + ++ +L ++
Sbjct: 4 IESIQNQKIKQIAKLHNRKD-RKKMQQFIIEGEHLVEEAVNSN-------IDIEMILTVN 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ E + S ++ V +KLS ++ + I A+ MK + K+A+
Sbjct: 56 PDRLTEAMVAGSKQQYEITFKVAEKLSQTEAPQGIYAVCNMK----------DGKDAE-- 103
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
++R++ LD IQDPGN+GT++RTA A V + G D +++K LRAS+G+ F
Sbjct: 104 -----LNRVIYLDRIQDPGNVGTIIRTADAAGLDAVIIAKGTVDIYNDKVLRASQGSVFH 158
Query: 262 LPIVSGSW 269
+P++ +
Sbjct: 159 IPVIEMDF 166
>gi|417858722|ref|ZP_12503779.1| rRNA methylase [Agrobacterium tumefaciens F2]
gi|338824726|gb|EGP58693.1| rRNA methylase [Agrobacterium tumefaciens F2]
Length = 286
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 24/239 (10%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L Q R G+ + G + + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTQKKG-REETGTFMAEGLKLVIDALELGWTIK-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ + TV +V++ S + I +I P V I QK
Sbjct: 67 VYAKAAKGKPLVEQAAVKTVASGGLVLE-----VSEKVIASITRRDNPQMVVGI-FEQKW 120
Query: 198 ADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ P + LD ++DPGNLGT++RTA A GV L+ C DPFS + +RA+
Sbjct: 121 KPLKDIRPEKGETYIALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLCL 315
G+ F P+ S K + ++A H G+ + R++ +AG P+ L
Sbjct: 181 GSVFATPVARASVEEFLSWKKSANVSVVATHLAGSVDYRKI---------DYAGKPVVL 230
>gi|395767568|ref|ZP_10448101.1| hypothetical protein MCS_01034 [Bartonella doshiae NCTC 12862]
gi|395413931|gb|EJF80384.1| hypothetical protein MCS_01034 [Bartonella doshiae NCTC 12862]
Length = 275
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 29/227 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SNP +K L Q + R+ G + G + + + +LQ L
Sbjct: 9 VKEITSLSNPIIKDLKALSQKKN-RNREGLFIAEGLKLVIDALHLGWTLQT--------L 59
Query: 139 LLDKVEVPE-GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ K ++ +N + HT+ V+K S + +E+I P +V + Q
Sbjct: 60 IFSKSKIGNTATENAAAHTIAHGGFVIK-----TSQKVLESITRRDNPQTVIGVFKQQ-- 112
Query: 198 ADCRSWFP-------SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
W P + + LD ++DPGNLGT++RTA A GV L+ DPFS +
Sbjct: 113 -----WHPLETIKEQAKDVFVALDRVRDPGNLGTIIRTADAISAKGVILIGETTDPFSPE 167
Query: 251 ALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
+RA+ G+ F +P+ F+ ++ H G+ + R +
Sbjct: 168 TVRATMGSIFSIPLYRCDESIFLKWSKHFKGMIVGTHLKGSTDYRTI 214
>gi|395791664|ref|ZP_10471120.1| hypothetical protein MEC_01111 [Bartonella alsatica IBS 382]
gi|395407967|gb|EJF74587.1| hypothetical protein MEC_01111 [Bartonella alsatica IBS 382]
Length = 280
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 99/222 (44%), Gaps = 17/222 (7%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK ITS SNP +K L Q + R+ G + G + + +N ++Q
Sbjct: 8 KVKEITSLSNPIIKGLRALSQKKN-RNREGLFIAEGLKLVIDAFNLGWTIQT-------- 58
Query: 138 LLLDKVEVPEG-LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
L+ K ++ ++ + TV V+K S + +E+I P ++ I QK
Sbjct: 59 LIFSKSKIGNAAIEKTAARTVANGGFVIK-----ASQKVLESITRRDNPQTIIGI-FKQK 112
Query: 197 EADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
+ + V LD ++DPGNLGT++RT A GV L+ DPFS + +RA+
Sbjct: 113 WQPIEMIKGQVEDVYVALDRVRDPGNLGTIIRTVDAVGAKGVILIGETTDPFSPETVRAT 172
Query: 256 RGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
G+ F +P+ F+ ++ H GN + R+V
Sbjct: 173 MGSIFSVPLYCIDENAFLSWSKSFKGMIVGTHLKGNVDYRKV 214
>gi|254804971|ref|YP_003083192.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
gi|254668513|emb|CBA05886.1| putative RNA methyltransferase [Neisseria meningitidis alpha14]
Length = 261
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 93/187 (49%), Gaps = 28/187 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVR 133
+K+I+ST+N ++H +L +R + ++ G ++ R + E +
Sbjct: 1 MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEAKMP 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ + L V +PE D I + VS ++KK+S + ++ I +AL+ IP D
Sbjct: 61 SEEVRKLTAV-LPE--DRIFS----VSDGILKKISSLSCADDI--LALIDIPLGGTLPD- 110
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
+ DC +VLDG+QDPGN+GT+LR+A A G V L GC D +S K LR
Sbjct: 111 ---KGDC----------VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWSPKVLR 157
Query: 254 ASRGACF 260
A GA F
Sbjct: 158 AGMGAHF 164
>gi|15964143|ref|NP_384496.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti 1021]
gi|334314793|ref|YP_004547412.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium meliloti AK83]
gi|384528130|ref|YP_005712218.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium meliloti BL225C]
gi|384534487|ref|YP_005718572.1| probabable RNA methyltransferase, TrmH family [Sinorhizobium
meliloti SM11]
gi|407719232|ref|YP_006838894.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti Rm41]
gi|418400285|ref|ZP_12973827.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti CCNWSX0020]
gi|433612176|ref|YP_007188974.1| rRNA methylase [Sinorhizobium meliloti GR4]
gi|15073319|emb|CAC41827.1| Probable RNA methyltransferase, TrmH family [Sinorhizobium meliloti
1021]
gi|333810306|gb|AEG02975.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti BL225C]
gi|334093787|gb|AEG51798.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium meliloti AK83]
gi|336031379|gb|AEH77311.1| probabable RNA methyltransferase, TrmH family [Sinorhizobium
meliloti SM11]
gi|359505754|gb|EHK78274.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti CCNWSX0020]
gi|407317464|emb|CCM66068.1| tRNA/rRNA methyltransferase [Sinorhizobium meliloti Rm41]
gi|429550366|gb|AGA05375.1| rRNA methylase [Sinorhizobium meliloti GR4]
Length = 288
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 114/258 (44%), Gaps = 19/258 (7%)
Query: 63 INDDADDGRKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYN 122
IND +D G A VK +TS +NP VK L Q +R S + G + + +
Sbjct: 2 INDRSDHGTGTARVGQVKEVTSLTNPIVKDIRALTQKK-HRDETRSFMAEGLKLVIDALD 60
Query: 123 FNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALM 182
++ L+ + ++ ++ TV +V++ + + I I
Sbjct: 61 LGWKIK-------TLVYAKAAKGKPQVEQVAAKTVARGGLVLE-----VNEKVISTITRR 108
Query: 183 KIPTSVFSIDVNQKEADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLP 241
P V I Q+ + R P V LD ++DPGNLGT++RTA A G+ L+
Sbjct: 109 DNPQMVVGI-FEQRYSPLRDIHPQEGETYVALDRVRDPGNLGTIIRTADAAGASGIILVG 167
Query: 242 GCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLS 301
DPFS + +RA+ G+ F +PI + + ++++A H G+ + R + S
Sbjct: 168 ETTDPFSLETVRATMGSVFAIPIARANTEDFIRWQRAAGVQVVATHLAGSVDYRTIDYKS 227
Query: 302 QE----LADSFAGVPLCL 315
+ + + AG+P+ L
Sbjct: 228 KPVVLLMGNEQAGLPVEL 245
>gi|408787209|ref|ZP_11198940.1| tRNA/rRNA methyltransferase SpoU [Rhizobium lupini HPC(L)]
gi|408486840|gb|EKJ95163.1| tRNA/rRNA methyltransferase SpoU [Rhizobium lupini HPC(L)]
Length = 285
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 102/239 (42%), Gaps = 24/239 (10%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L Q R G+ + G + + +++ L
Sbjct: 14 QVKEVTSLANPIIKDIKALTQKKG-REETGTFMAEGLKLVIDALELGWTIK-------TL 65
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ + TV +V++ S + I +I P V I QK
Sbjct: 66 VYAKAAKGKPLVEQAAVKTVASGGLVLE-----VSEKVIASITRRDNPQMVVGI-FEQKW 119
Query: 198 ADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ P + LD ++DPGNLGT++RTA A GV L+ C DPFS + +RA+
Sbjct: 120 KPLKDIRPEKGETYIALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATM 179
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLCL 315
G+ F P+ S K + L+A H G+ + R++ +AG P+ +
Sbjct: 180 GSIFATPVARASVEEFLSWKKSAHVSLVATHLAGSVDYRKI---------DYAGKPVVI 229
>gi|385855235|ref|YP_005901748.1| TrmH family RNA methyltransferase [Neisseria meningitidis
M01-240355]
gi|421538110|ref|ZP_15984287.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 93003]
gi|325204176|gb|ADY99629.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
M01-240355]
gi|402316929|gb|EJU52468.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 93003]
Length = 261
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 28/187 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYN-----FNRSLQERTVR 133
+K+I+ST+N ++H +L +R + ++ G ++ + E +
Sbjct: 1 MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGKPLGVYIPEGKMP 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ + L V VPEG VS ++KK+S + ++ I +AL+ IP D
Sbjct: 61 SEEIRRLRAV-VPEG------RIFSVSDGILKKISSLSCADDI--LALIDIPLGGTLPD- 110
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
+ DC +VLDG+QDPGN+GT+LR+A A G V L GC D +S K LR
Sbjct: 111 ---KGDC----------VVLDGVQDPGNVGTVLRSAAAAGVGTVVLDRGCADAWSPKVLR 157
Query: 254 ASRGACF 260
A GA F
Sbjct: 158 AGMGAHF 164
>gi|261409276|ref|YP_003245517.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus sp. Y412MC10]
gi|261285739|gb|ACX67710.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. Y412MC10]
Length = 266
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 33/196 (16%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
I S N VK +L Q +R +V G ++E + ++ C+
Sbjct: 2 EILSPQNARVKGWAQL-QEKKHRDKQNKYVVEGIHLVQEALSSGADIE-------CVAYD 53
Query: 141 DKVEVPEGLDNIS-----THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
+P+ L +I+ + VS V+ K+S S P VF+ V +
Sbjct: 54 VDKGIPQELRHITDTGQGAEWIGVSHAVISKVSDTPS------------PQQVFA--VIR 99
Query: 196 KEADCRSWFPSIHR----ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
KEA R W I R ++VLDG+QDPGN+GT++R+A A GV L GC D ++ K
Sbjct: 100 KEA--RQWQDLILRENGMVVVLDGLQDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKT 157
Query: 252 LRASRGACFQLPIVSG 267
LR++ G+ F LP++ G
Sbjct: 158 LRSTMGSLFHLPVLEG 173
>gi|386319592|ref|YP_006015755.1| TrmH family RNA methyltransferase [Staphylococcus pseudintermedius
ED99]
gi|323464763|gb|ADX76916.1| RNA methyltransferase, TrmH family [Staphylococcus pseudintermedius
ED99]
Length = 248
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 25/186 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS NP +K+ KL++ R G A++ G I E E +++ L
Sbjct: 1 MEAITSIQNPKIKNYNKLKKKKE-RDKQGLAILEGFHLIEEAV-------ESQIKVTQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+++ VP L + ++ V + LSG + P +F+I + + +
Sbjct: 53 MIEPSRVPTELIEAAEEVYEITQKVAETLSGTVT------------PQGIFAI-IEKPQV 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D + ++L+LD IQDPGNLGT++RTA A + + G D + +K LRAS+G+
Sbjct: 100 DVTAA----KQVLILDRIQDPGNLGTMIRTADAAGLDLIVMTKGTADVYQDKVLRASQGS 155
Query: 259 CFQLPI 264
F +PI
Sbjct: 156 VFHIPI 161
>gi|395789052|ref|ZP_10468582.1| hypothetical protein ME9_00299 [Bartonella taylorii 8TBB]
gi|395431186|gb|EJF97213.1| hypothetical protein ME9_00299 [Bartonella taylorii 8TBB]
Length = 284
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 106/245 (43%), Gaps = 38/245 (15%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK I+S SNP +K L Q + R+ G + G + + N ++Q L
Sbjct: 9 VKEISSLSNPIIKDLRALSQKKN-RNREGLFMAEGLKLVIDALNLGWTIQT--------L 59
Query: 139 LLDKVEVPE-GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ K ++ ++N + TV V+K S + +E+I P +V I Q
Sbjct: 60 IFSKSKMENTAIENTAARTVANGGFVIK-----ASQKVMESITRRDNPQTVIGIFKQQ-- 112
Query: 198 ADCRSWFP------SIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
W P ++ + V LD ++DPGNLGT++RTA A GV L+ DPFS +
Sbjct: 113 -----WQPLEMIKGQVNDVYVALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPE 167
Query: 251 ALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAG 310
+RA+ G+ F +P+ F+ ++ H G+ + R + F G
Sbjct: 168 TVRATMGSIFSIPLYRFGESAFLNWSAHFKGMIIGTHLKGSTDYRTI---------DFKG 218
Query: 311 VPLCL 315
P+ L
Sbjct: 219 GPIIL 223
>gi|67925525|ref|ZP_00518860.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
gi|67852637|gb|EAM48061.1| tRNA/rRNA methyltransferase (SpoU) [Crocosphaera watsonii WH 8501]
Length = 261
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 17/187 (9%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS NP +K KL ++ R G L+ GT + Y N SL C
Sbjct: 2 ITSIRNPLIKQIRKLHRTKG-RREEGLLLLEGTHLVETAYEANCSLMTL-----CYTEQW 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ P+ +N+S R+ V ++ L+ + ++ + + + + T++F + D R
Sbjct: 56 RTRYPQLWENVSKKVQRLELVSLEVLTAMTTTINPDGV----VATALFEPFTEGEITDFR 111
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
LV++ +QDPGNLGT++RTA A G++L D K LRAS GA FQ
Sbjct: 112 LG-------LVIERLQDPGNLGTIIRTAAATGIDGIWLSDDSVDVDHPKVLRASAGAWFQ 164
Query: 262 LPIVSGS 268
+PI S
Sbjct: 165 VPIFISS 171
>gi|83590588|ref|YP_430597.1| tRNA/rRNA methyltransferase SpoU [Moorella thermoacetica ATCC
39073]
gi|83573502|gb|ABC20054.1| tRNA/rRNA methyltransferase (SpoU) [Moorella thermoacetica ATCC
39073]
Length = 272
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 86/187 (45%), Gaps = 10/187 (5%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS +N +VK L Q S+R G L+ G + E SL E + +
Sbjct: 4 ITSPNNRYVKLARSL-QDRSWREKKGLYLIEGIHLLEEALQAGTSL-EVVLHSPRIFTTS 61
Query: 142 KVE-VPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
+ E + GL + V+ +M +S + I A+A M+ + V
Sbjct: 62 RGEKLVAGLQRAGYQCLAVTEELMAGISTTMTPPGIVAVAPMQAKNLAELLAVT------ 115
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
S S ++ GIQDPGNLGT+ RTA+ G+ L GC DP++ K +R++ GA F
Sbjct: 116 -SPLHSPPLFIIAAGIQDPGNLGTIWRTALGAGATGLILTRGCVDPYNPKVVRSAMGATF 174
Query: 261 QLPIVSG 267
+LP+ G
Sbjct: 175 RLPVAGG 181
>gi|223043735|ref|ZP_03613778.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14]
gi|417907694|ref|ZP_12551465.1| RNA methyltransferase, TrmH family [Staphylococcus capitis VCU116]
gi|222442832|gb|EEE48934.1| RNA methyltransferase, TrmH family [Staphylococcus capitis SK14]
gi|341595723|gb|EGS38366.1| RNA methyltransferase, TrmH family [Staphylococcus capitis VCU116]
Length = 246
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ + R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNKIKNA-NKLKKKRDRDKTGLALIEGIHLIEEAY-------QSGIEIKQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+++ E L + + T ++ V + LSG + P F++
Sbjct: 53 VIEPDRTDEDLIDYANETYEINMKVAEALSGTVT------------PQGFFAVIEKPHYN 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D + ++L++D IQDPGNLGTL+RTA A + + G DP+ +K +RAS+G+
Sbjct: 101 DTEA-----QQVLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVMRASQGS 155
Query: 259 CFQLPIV 265
F +PIV
Sbjct: 156 IFHIPIV 162
>gi|241662958|ref|YP_002981318.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12D]
gi|240864985|gb|ACS62646.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12D]
Length = 260
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 31/213 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVR 133
+K+ITS N KH L S+ +R G +++ G + + + ER +R
Sbjct: 1 MKHITSRDNAVFKHLKALSGSTQHRRRAGQSVLDGVHLVVAYLDAGHMPAQCLVSERHIR 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTV-RVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID 192
EV LD + TV ++ + +L+ V + ++ +AL++ P
Sbjct: 61 HP--------EVAAVLDRVDPDTVILLADNLFGQLTTVVNG--VDLMALVETPEGKLPQT 110
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
+ +ADC ++LDGIQD GN+G++LR A A VF+ PGC +S K L
Sbjct: 111 I---DADC----------VILDGIQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTL 157
Query: 253 RASRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
RA+ GA F L IV + E + Q+ LLA
Sbjct: 158 RAAMGAHFHLNIVEHCTF--ESVHSRLQVPLLA 188
>gi|418938166|ref|ZP_13491728.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium sp. PDO1-076]
gi|375055167|gb|EHS51440.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium sp. PDO1-076]
Length = 286
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 15/221 (6%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP VK L Q S S + L G + + +++ L
Sbjct: 15 QVKEVTSLANPIVKDIKALSQKKSRDESR-TFLAEGLKLVIDALELGWTIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ ++ TV +V++ S + + AI P V ++ Q+
Sbjct: 67 VYAKAGKGKPLVEKVAARTVASGGLVLE-----VSEKVMSAITRRDNPQMVSAV-FEQRW 120
Query: 198 ADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
R PS + + LD ++DPGNLGT++RTA A GV L+ C DPFS + +RA+
Sbjct: 121 TSLRDVAPSDGQTWIALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
G+ F +P++ + K +L+A H G + R +
Sbjct: 181 GSMFAVPLIKATPVEFLKWKKGSGARLVATHLAGAVDYRTI 221
>gi|418407868|ref|ZP_12981185.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens 5A]
gi|358005854|gb|EHJ98179.1| tRNA/rRNA methyltransferase [Agrobacterium tumefaciens 5A]
Length = 286
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 103/239 (43%), Gaps = 24/239 (10%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L Q R G+ + G + + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTQKKG-REETGTFMAEGLKLVIDALELGWTIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ + TV +V++ S + I +I P V I +Q+
Sbjct: 67 VYAKAAKGKPLVEQAAVKTVASGGLVLE-----VSEKVIASITRRDNPQMVVGI-FDQRW 120
Query: 198 ADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ P + LD ++DPGNLGT++RTA A GV L+ C DPFS + +RA+
Sbjct: 121 KPLKDIRPEKGETYIALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLCL 315
G+ F P+ S K + ++A H G+ + R++ +AG P+ L
Sbjct: 181 GSVFATPVARASVEEFLSWKKSANVSVVATHLAGSVDYRKI---------DYAGKPVVL 230
>gi|298243921|ref|ZP_06967728.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
44963]
gi|297556975|gb|EFH90839.1| tRNA/rRNA methyltransferase (SpoU) [Ktedonobacter racemifer DSM
44963]
Length = 278
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 31/221 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALV-----------VGTTPIREIYNFNRSLQER 130
I+ST+NP V +L ++ R G L+ G P+ E+Y +Q +
Sbjct: 4 ISSTANPRVSKLQRL-HTTRGRKKSGQCLLEGPHLLLALLDAGMVPL-EVYYQPEVMQRQ 61
Query: 131 TVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS 190
+ LLL++V+ E + VS VM+ +S VQ+S+ I V
Sbjct: 62 A---ETRLLLERVKNAELGEQ---QLFEVSERVMEAISDVQTSQGI---------VCVMD 106
Query: 191 IDVNQKEADCRSWFPSIH-RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
+ + A R P+ +L+LD + DPGN+GT++RTA+A V L P C D F+
Sbjct: 107 LAAFEAAAVTRRRAPASRPALLILDDLADPGNMGTIMRTALAADVERVLLTPNCVDCFNS 166
Query: 250 KALRASRGACFQLPIVSG-SWYHL-EVLKDEFQMKLLAGHA 288
K +R++ GA LP+ S +W + E ++ Q ++L A
Sbjct: 167 KVIRSAAGAHLFLPVESNINWDEIQERVRAHCQERVLMAEA 207
>gi|163815365|ref|ZP_02206740.1| hypothetical protein COPEUT_01530 [Coprococcus eutactus ATCC 27759]
gi|158449339|gb|EDP26334.1| putative RNA methyltransferase, TrmH family, group 3 [Coprococcus
eutactus ATCC 27759]
Length = 272
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 96/221 (43%), Gaps = 33/221 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREI--------YNFNRSLQERTVR 133
IT+ SNP VK KL + S R +V G REI Y + E
Sbjct: 8 ITANSNPKVKMLNKLNKDSRLRRERDVFIVEGIRMFREIPVDSVDEIYMSESAYAEYCDE 67
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
D L + EV TV SV +GV +++ + + + + +
Sbjct: 68 DDLQELYNAAEV----------TVMSDSV----FAGVSQTKTPQG-CMAVVRCFHYEMTD 112
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
D ++ L+LD IQDPGN+GT+ R+A A GV + PG CDP++ K +R
Sbjct: 113 IAGSTDTATY-------LILDTIQDPGNMGTIFRSAEAAGITGVIIGPGSCDPYNPKVVR 165
Query: 254 ASRGACFQLPIVSGS--WYHLEVLKDEFQMKLLAGHAGGNE 292
++ GA F++P V Y ++ LK + + + H G E
Sbjct: 166 STMGAIFRVPFVQSDDLIYTIDALKRKGVL-IYGAHLDGEE 205
>gi|407477866|ref|YP_006791743.1| hypothetical protein Eab7_2032 [Exiguobacterium antarcticum B7]
gi|407061945|gb|AFS71135.1| Hypothetical protein Eab7_2032 [Exiguobacterium antarcticum B7]
Length = 251
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+I+S N VK KL S L+ G + E R + L+
Sbjct: 1 MKHISSAKNEIVKQWKKLLTKKGRLQSK-RFLIEGEHLVEEAV--------RAGIIKELI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D V+VP + + + V K LS ++++ I A+ MK Q E
Sbjct: 52 VRDDVQVPGSWKKNAADLITIDESVAKVLSETETTQGIFAVCEMK----------EQTER 101
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
R R L+LD +QDPGN+GT++RTA A + GV + G D ++ K LRA++G+
Sbjct: 102 LERG------RYLLLDRLQDPGNVGTMIRTADAAGFDGVIIGHGTVDVYNSKVLRATQGS 155
Query: 259 CFQLPIV 265
F LP++
Sbjct: 156 IFHLPVI 162
>gi|313200946|ref|YP_004039604.1| tRNA/rRNA methyltransferase SpoU [Methylovorus sp. MP688]
gi|312440262|gb|ADQ84368.1| tRNA/rRNA methyltransferase (SpoU) [Methylovorus sp. MP688]
Length = 260
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 95/195 (48%), Gaps = 31/195 (15%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIRE---IYNFNRSL---QERTVR 133
K+ITS NP K KL +SS R G L+ G +R+ ++ R L + ++
Sbjct: 4 KHITSRDNPVFKQLKKLAESSRERRRLGQTLLDGPHLLRDYMAVFGTPRQLIIAEGQSTN 63
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
L+ + ++P T+ V++++ +LS V + I +AL+ P
Sbjct: 64 EVNGLIQELADIP---------TLMVTTLMFAELSPVTTPTGI--LALVDTPQLPLP--- 109
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
++ +L+L+ IQDPGNLG++LR+A A V+L GC + +S KALR
Sbjct: 110 -----------ETLEFVLMLEDIQDPGNLGSMLRSAAAAGVQVVYLSEGCAEAWSPKALR 158
Query: 254 ASRGACFQLPIVSGS 268
+GA F LP+V S
Sbjct: 159 GGQGAQFVLPVVERS 173
>gi|398818396|ref|ZP_10576987.1| rRNA methylase [Brevibacillus sp. BC25]
gi|398027838|gb|EJL21368.1| rRNA methylase [Brevibacillus sp. BC25]
Length = 275
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 89/193 (46%), Gaps = 21/193 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSL------QERTVRMD 135
ITS NP VK +L S R LV G + E + Q+R +
Sbjct: 6 ITSVQNPLVKRLHQLL-SRKGREEQQRFLVEGAHLVEEALKSGAEVVTVIYDQQRDMDPA 64
Query: 136 CLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
C L PE S + S V+ KLS +S + I +A +K ++ V++
Sbjct: 65 CQRAL--ANHPE-----SVQVIAASEAVLAKLSETKSPQGI--VAEVKKTAVDWTKWVDK 115
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
K + S +L LD IQDPGNLGT+LRTA A GV L G D ++ K +RA+
Sbjct: 116 KREEQGSLL-----LLFLDEIQDPGNLGTILRTAEAAAVDGVVLGSGSVDIYNGKVVRAT 170
Query: 256 RGACFQLPIVSGS 268
GA F++P+ + S
Sbjct: 171 MGALFRIPVFTQS 183
>gi|373454585|ref|ZP_09546451.1| hypothetical protein HMPREF9453_00620 [Dialister succinatiphilus
YIT 11850]
gi|371935860|gb|EHO63603.1| hypothetical protein HMPREF9453_00620 [Dialister succinatiphilus
YIT 11850]
Length = 263
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 29/198 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+++ITS SN ++K L+L+Q +R G L+ G ++ N + VR DC+
Sbjct: 1 MEHITSRSNRWIKCALRLKQRK-WRDKEGLFLLEGLRGTTDVLN-------QQVR-DCIC 51
Query: 139 LLDKVEVPEGL-DNISTHTVR-------VSSVVMKKLSGVQSSESIEAIALMKIPTSVFS 190
++ + + + D + + R V +M LSG + + I + +
Sbjct: 52 FIEDGRLADDMVDELVSQGERLHWLFLSVDKEMMHLLSGTEHGQGILLLCRKQ------H 105
Query: 191 IDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
D+++ + ++ +VLD +QDPGN+GT+LRT A G+ L GC D ++EK
Sbjct: 106 HDLSELLHPLKGYY------VVLDSVQDPGNMGTILRTCAAAGVKGLILTEGCTDIYAEK 159
Query: 251 ALRASRGACFQLPIVSGS 268
+R+S G+ +LPI G+
Sbjct: 160 VVRSSMGSILRLPIYEGA 177
>gi|167629871|ref|YP_001680370.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
Ice1]
gi|167592611|gb|ABZ84359.1| RNA methyltransferase, trmh family [Heliobacterium modesticaldum
Ice1]
Length = 272
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 19/189 (10%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
ITS N VK L + R G L+ G E + SL CL
Sbjct: 2 KITSPDNRHVKEARSLSRKKE-RGVTGKYLIEGVRLAEEAAASSVSLAY------CLYTE 54
Query: 141 DKVEVPEG---LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
P G LD ++ V V + L+ + +E + I L V ++ E
Sbjct: 55 RVAAQPRGRRLLDRLAAAGVDCLEVDDRALATITETEQSQGIVL------VANLAPAHWE 108
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
A + P + L++DG+QDPGNLGT++RTA A GV L PG DP+ K +R + G
Sbjct: 109 AVIAAPEPFL---LIVDGVQDPGNLGTIIRTAEAAGVTGVLLTPGTVDPYGPKVIRGTMG 165
Query: 258 ACFQLPIVS 266
A F+LP+ +
Sbjct: 166 ALFRLPVAT 174
>gi|334345272|ref|YP_004553824.1| tRNA/rRNA methyltransferase SpoU [Sphingobium chlorophenolicum L-1]
gi|334101894|gb|AEG49318.1| tRNA/rRNA methyltransferase (SpoU) [Sphingobium chlorophenolicum
L-1]
Length = 265
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 25/196 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+ IT SNP VK LR+ +R + G L G + E +E V + L
Sbjct: 2 AREITGFSNPLVKRVRSLREKK-FRKAEGLFLAEGLRILTEA-------REEGVLPEMLF 53
Query: 139 LLDK-----VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+++ ++ + + ++ K+SG + +++ + ++ T + +D
Sbjct: 54 HAGSTHPLAIDLIAAMEAAGGDVIETTPDILSKISGKDNPQAVVGVYRDRL-TPLAKLD- 111
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
+ +AD W +V ++DPGNLGT+LRT A GG+ L+ C DPFS +++R
Sbjct: 112 -RTKADI--W-------IVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVR 161
Query: 254 ASRGACFQLPIVSGSW 269
AS GA F PI W
Sbjct: 162 ASMGALFTQPITQARW 177
>gi|226311224|ref|YP_002771118.1| RNA methyltransferase [Brevibacillus brevis NBRC 100599]
gi|226094172|dbj|BAH42614.1| putative RNA methyltransferase [Brevibacillus brevis NBRC 100599]
Length = 271
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 90/193 (46%), Gaps = 21/193 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSL------QERTVRMD 135
ITS NP VK +L S R LV G + E + Q+R +
Sbjct: 6 ITSVQNPLVKRLHQLL-SRKGREEQQRFLVEGAHLVEEALKSGAEVVTVIYDQQRDMDPA 64
Query: 136 CLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
C L PE + I+ V+ KLS +S + I +A +K + ++ V+Q
Sbjct: 65 CQRAL--ANHPEAVQVIAA-----PETVLAKLSETKSPQGI--VAEVKKTAADWAKWVDQ 115
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
K + S +L LD IQDPGNLGT+LRTA A GV L G D ++ K +RA+
Sbjct: 116 KREEQGSLL-----LLFLDEIQDPGNLGTILRTAEAAAIDGVVLGSGSVDIYNGKVVRAT 170
Query: 256 RGACFQLPIVSGS 268
GA F++P+ + S
Sbjct: 171 MGALFRIPVFTQS 183
>gi|329924982|ref|ZP_08279928.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5]
gi|328940271|gb|EGG36601.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF5]
Length = 266
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 91/196 (46%), Gaps = 33/196 (16%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
I S N K +L Q +R +V G ++E + ++ CL
Sbjct: 2 EILSPQNARAKGWAQL-QEKKHRDKQNKYVVEGIHLVQEALSSGADIE-------CLAYD 53
Query: 141 DKVEVPEGLDNIS-----THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
+P+ L +I+ + VS V+ K+S S P VF+ V +
Sbjct: 54 VDKGIPQELRHITDTGQGAEWIGVSHAVISKVSDTPS------------PQQVFA--VIR 99
Query: 196 KEADCRSWFPSIHR----ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
KEA R W I R ++VLDG+QDPGN+GT++R+A A GV L GC D ++ K
Sbjct: 100 KEA--RQWQDLILRENGLVVVLDGLQDPGNVGTIIRSADAVGAAGVVLGRGCADLYNPKT 157
Query: 252 LRASRGACFQLPIVSG 267
LR++ G+ F LP++ G
Sbjct: 158 LRSTMGSLFHLPVLEG 173
>gi|223985223|ref|ZP_03635307.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM
12042]
gi|223962801|gb|EEF67229.1| hypothetical protein HOLDEFILI_02613 [Holdemania filiformis DSM
12042]
Length = 244
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 47/64 (73%)
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
++ P+ R +VLDG+QDPGN+GT++RTA+AF + V L P C D ++EK +R+++GA F
Sbjct: 92 KTTAPAGLRTVVLDGVQDPGNVGTIIRTAVAFGFDQVLLSPDCADVYNEKCVRSTQGALF 151
Query: 261 QLPI 264
+ I
Sbjct: 152 HIAI 155
>gi|332184962|ref|ZP_08386711.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Sphingomonas sp. S17]
gi|332014686|gb|EGI56742.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Sphingomonas sp. S17]
Length = 270
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 29/198 (14%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
+ IT+ SNP +K LR +R L G + E + T R+ LL
Sbjct: 3 REITAYSNPLIKWVRDLR-DKRHRKQARQFLAEGLRILTE--------AKETGRLPTLLF 53
Query: 140 LDKV--------EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI 191
K ++ ++ + + ++ KLSG + +++ + ++ T++ +
Sbjct: 54 FAKPSADHPLVRQLVRAVELAGGEAIETTPDILSKLSGKDNPQAVVGV-FEELGTTLDML 112
Query: 192 DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
D + W LV + ++DPGNLGT+LRT A GG+ L+ C DPFS +A
Sbjct: 113 D----RSSSGIW-------LVAERLRDPGNLGTILRTGDAVGAGGLILVGECVDPFSVEA 161
Query: 252 LRASRGACFQLPIVSGSW 269
+RAS GA F +PIV W
Sbjct: 162 VRASMGALFTVPIVKTEW 179
>gi|390562011|ref|ZP_10244272.1| tRNA/rRNA methyltransferase (SpoU) [Nitrolancetus hollandicus Lb]
gi|390173413|emb|CCF83573.1| tRNA/rRNA methyltransferase (SpoU) [Nitrolancetus hollandicus Lb]
Length = 266
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSW 269
++V D I+DPGNLGTL+R+A+ +F+ PG DPF+ K +R+ A F+LPI S SW
Sbjct: 121 VVVADTIRDPGNLGTLIRSALGSGANALFVTPGTVDPFNPKVVRSGMSAHFRLPIRSYSW 180
Query: 270 YHLEVLKDEFQMKLLA 285
L + EF ++ A
Sbjct: 181 EELAGVIPEFGQRIAA 196
>gi|425738665|ref|ZP_18856923.1| RNA methyltransferase [Staphylococcus massiliensis S46]
gi|425479012|gb|EKU46193.1| RNA methyltransferase [Staphylococcus massiliensis S46]
Length = 246
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 96/186 (51%), Gaps = 25/186 (13%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
+ITS N +K+ KL++ R + G L+ G I E + + + ++ L ++
Sbjct: 3 SITSKQNVKIKNANKLKRKK-VRDAEGKVLLEGVHLIVEAF-------QNQIEIEQLFVV 54
Query: 141 DKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
+ + E + + + ++ + + LS + + + A+++ PT +V K
Sbjct: 55 REDLIHEDIIHKAQEVYEINLDIAEALSDTVTPQGV--FAVIQKPTY----EVADK---- 104
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
+R+L++D +QDPGNLGT++RTA A + + + G DP+ +K LRAS+G+ F
Sbjct: 105 -------NRVLLVDRVQDPGNLGTMIRTADAAGYDLIVISRGTVDPYQDKVLRASQGSVF 157
Query: 261 QLPIVS 266
+PIV+
Sbjct: 158 HIPIVN 163
>gi|254431824|ref|ZP_05045527.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001]
gi|197626277|gb|EDY38836.1| tRNA/rRNA methyltransferase [Cyanobium sp. PCC 7001]
Length = 285
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 90/190 (47%), Gaps = 26/190 (13%)
Query: 82 ITSTSNPFVKHCLKLRQ--SSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
I+S NP VK +LRQ ++ R G L+ GT ++E + +
Sbjct: 9 ISSRRNPLVK---RLRQLHTAKGRREQGLVLLEGTHLLQEALRLGL----EPAHLLATGM 61
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+ P L I V +++V + L+ V +++ + + + +PT
Sbjct: 62 WQRNHAPT-LGAIRA-GVAITTVTEEVLAAVATTDHPDGV-VAALPT------------P 106
Query: 200 CRSWFPSIHR-ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
W P+ R +L LDG+QDPGNLGTL+RTA+A ++L G DP KALRAS GA
Sbjct: 107 PAGWGPATARLVLALDGVQDPGNLGTLMRTALAAGVEALWLAEG-ADPLQPKALRASAGA 165
Query: 259 CFQLPIVSGS 268
LP+ GS
Sbjct: 166 ALALPLQRGS 175
>gi|253996869|ref|YP_003048933.1| tRNA/rRNA methyltransferase SpoU [Methylotenera mobilis JLW8]
gi|253983548|gb|ACT48406.1| tRNA/rRNA methyltransferase (SpoU) [Methylotenera mobilis JLW8]
Length = 263
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 91/196 (46%), Gaps = 39/196 (19%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
K+I S NP K K ++ R + G L+ G I E Y MD
Sbjct: 4 KHIISRDNPVFKQLKKFADNARERRAEGKTLLDGVHLI-ESY------------MDTFGE 50
Query: 140 LDKVEVPEGLDNIST----------HTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVF 189
D + +PEG ++ T+ + +++ +L+ V ++ I +AL+KIP
Sbjct: 51 PDLIIIPEGKSSVEATGLIQNLADISTIMLPTLMFAELTPVANATGI--LALVKIP---- 104
Query: 190 SIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
Q + F +L+L+ IQDPGN+G++LRTA A V+L C D +S
Sbjct: 105 -----QLPVPEQPEF-----VLMLEDIQDPGNIGSMLRTAAASGVDVVYLSTSCTDVWSP 154
Query: 250 KALRASRGACFQLPIV 265
KALR +GA F LPIV
Sbjct: 155 KALRGGQGAQFVLPIV 170
>gi|366089243|ref|ZP_09455716.1| 23S rRNA methyltransferase [Lactobacillus acidipiscis KCTC 13900]
Length = 256
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 19/189 (10%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I ST N VK+ KL Q+ R G L+ G + E N ++ E + L
Sbjct: 1 MKYIQSTGNQTVKNWKKL-QTKKGRSRQGKYLLEGWHLLDEALKANENISEIMITPAALE 59
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ E+PE +D +S V ++LS S + I A ++ + E
Sbjct: 60 HANPQEMPEEVD-----IYEISDEVAQQLSATPSPQGIFATVIIGQTKEIIP------EK 108
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+W L LD IQDPGN+GT++RTA A + GV L G D + K +R+ +G+
Sbjct: 109 MTGAW-------LFLDTIQDPGNVGTMVRTADAAGFKGVVLSEGSVDMYQPKLVRSMQGS 161
Query: 259 CFQLPIVSG 267
F + I+ G
Sbjct: 162 QFHVKIIEG 170
>gi|385857242|ref|YP_005903754.1| TrmH family RNA methyltransferase [Neisseria meningitidis NZ-05/33]
gi|416178139|ref|ZP_11610450.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M6190]
gi|416187814|ref|ZP_11614426.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M0579]
gi|416192196|ref|ZP_11616477.1| RNA methyltransferase, TrmH family [Neisseria meningitidis ES14902]
gi|421542463|ref|ZP_15988570.1| tRNA/rRNA methyltransferase [Neisseria meningitidis NM255]
gi|421550661|ref|ZP_15996662.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 69166]
gi|421554765|ref|ZP_16000704.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 98008]
gi|421567501|ref|ZP_16013235.1| tRNA/rRNA methyltransferase [Neisseria meningitidis NM3001]
gi|433469334|ref|ZP_20426756.1| spoU rRNA Methylase family protein [Neisseria meningitidis 98080]
gi|433471516|ref|ZP_20428902.1| spoU rRNA Methylase family protein [Neisseria meningitidis 68094]
gi|433477612|ref|ZP_20434932.1| spoU rRNA Methylase family protein [Neisseria meningitidis 70012]
gi|433492551|ref|ZP_20449644.1| spoU rRNA Methylase family protein [Neisseria meningitidis NM586]
gi|433503215|ref|ZP_20460176.1| spoU rRNA Methylase family protein [Neisseria meningitidis NM126]
gi|433526074|ref|ZP_20482704.1| spoU rRNA Methylase family protein [Neisseria meningitidis 69096]
gi|433538946|ref|ZP_20495422.1| spoU rRNA Methylase family protein [Neisseria meningitidis 70030]
gi|325132246|gb|EGC54940.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M6190]
gi|325136323|gb|EGC58931.1| RNA methyltransferase, TrmH family [Neisseria meningitidis M0579]
gi|325138170|gb|EGC60741.1| RNA methyltransferase, TrmH family [Neisseria meningitidis ES14902]
gi|325208131|gb|ADZ03583.1| RNA methyltransferase, TrmH family [Neisseria meningitidis
NZ-05/33]
gi|402317293|gb|EJU52831.1| tRNA/rRNA methyltransferase [Neisseria meningitidis NM255]
gi|402329198|gb|EJU64559.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 69166]
gi|402331918|gb|EJU67249.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 98008]
gi|402343534|gb|EJU78680.1| tRNA/rRNA methyltransferase [Neisseria meningitidis NM3001]
gi|432204017|gb|ELK60064.1| spoU rRNA Methylase family protein [Neisseria meningitidis 98080]
gi|432208368|gb|ELK64346.1| spoU rRNA Methylase family protein [Neisseria meningitidis 68094]
gi|432215277|gb|ELK71166.1| spoU rRNA Methylase family protein [Neisseria meningitidis 70012]
gi|432228337|gb|ELK84037.1| spoU rRNA Methylase family protein [Neisseria meningitidis NM586]
gi|432239980|gb|ELK95524.1| spoU rRNA Methylase family protein [Neisseria meningitidis NM126]
gi|432260838|gb|ELL16095.1| spoU rRNA Methylase family protein [Neisseria meningitidis 69096]
gi|432273308|gb|ELL28406.1| spoU rRNA Methylase family protein [Neisseria meningitidis 70030]
Length = 261
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 40/193 (20%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT-----------TPIREIYNFNRSL 127
+++I+ST+N ++H +L +R + ++ G P+ +
Sbjct: 1 MRHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGMPVGVYIPEGKMP 60
Query: 128 QERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTS 187
E R+ + VPEG VS ++KK+S + ++ I +AL+ IP
Sbjct: 61 SEEIRRL-------RAVVPEG------RIFSVSDGILKKISSLSCADDI--LALIDIPLG 105
Query: 188 VFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPF 247
D + DC +VLDG+QDPGN+GT+LR+A A G V L GC D +
Sbjct: 106 GTLPD----KGDC----------VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAW 151
Query: 248 SEKALRASRGACF 260
S K LRA GA F
Sbjct: 152 SPKVLRAGMGAHF 164
>gi|374992889|ref|YP_004968388.1| rRNA methylase [Desulfosporosinus orientis DSM 765]
gi|357211255|gb|AET65873.1| rRNA methylase [Desulfosporosinus orientis DSM 765]
Length = 264
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 64/111 (57%), Gaps = 14/111 (12%)
Query: 159 VSSVVMKKLSGVQSSESIEAIALMKIPTSVFS-IDVNQKEADCRSWFPSIHRILVLDGIQ 217
V + V +K+S + + + A+ + + FS D++ K+ +L+LDG+Q
Sbjct: 77 VDARVFRKMSATEEPQGVLAV----VRQTTFSWSDIHIKQGTV---------VLILDGLQ 123
Query: 218 DPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
DPGNLGT+LRTA+A VFL PG D ++ K LR++ GA F L +++G
Sbjct: 124 DPGNLGTILRTALAAGVRQVFLTPGTVDLYNPKVLRSTMGAVFSLVVLTGQ 174
>gi|415884138|ref|ZP_11546167.1| RNA methyltransferase, TrmH family [Bacillus methanolicus MGA3]
gi|387591933|gb|EIJ84250.1| RNA methyltransferase, TrmH family [Bacillus methanolicus MGA3]
Length = 250
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 25/201 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+I S NP VK KL + R G+ LV G + E L L+
Sbjct: 1 MKHIHSIQNPQVKQWKKLL-TKKERDKTGTFLVEGHHLVEEALKAGSVLH--------LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ +K E+P + S V+ ++K LS ++ + + A+ ID Q +
Sbjct: 52 INEKEELPPRWNYGSIPVTMVTDEIIKTLSETEAPQGVLAVCRQN------KIDPEQIKG 105
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
R L++D +QDPGN+GT++RTA A V + G D ++ K LR+++G+
Sbjct: 106 K---------RFLLIDAVQDPGNVGTMIRTADAAGVDAVIVGNGSVDIYNSKVLRSAQGS 156
Query: 259 CFQLPIVSGSWYH-LEVLKDE 278
F LP++ G + +E LK E
Sbjct: 157 HFHLPVIRGDLFKWMERLKQE 177
>gi|374297298|ref|YP_005047489.1| rRNA methylase, putative, group 3 [Clostridium clariflavum DSM
19732]
gi|359826792|gb|AEV69565.1| rRNA methylase, putative, group 3 [Clostridium clariflavum DSM
19732]
Length = 267
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 88/185 (47%), Gaps = 17/185 (9%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS NP +K L++ YR G + G I E +++E+ L+
Sbjct: 4 ITSGQNPIIKEIKALKEKK-YRDQKGLYFIEGIRFIEE------AIKEKE-------LIS 49
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQS--SESIEAIALMKIPTSVFSIDVNQKEAD 199
KV V E + + + + +K+ + + ++ + + P + ++ + +K
Sbjct: 50 KVLVSEKIKEVKGGKEILKLLEEEKIGNIYTVPNKLYLEVTDTENPQGILAV-MRKKSVS 108
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
S + + +VLD IQDPGN+GT++RTA A V + GC D ++ K LRA+ G+
Sbjct: 109 VESVYDDKNFFVVLDSIQDPGNMGTIIRTADAAGATAVIVSKGCVDVYNPKVLRATMGSI 168
Query: 260 FQLPI 264
F LPI
Sbjct: 169 FHLPI 173
>gi|451941319|ref|YP_007461956.1| tRNA/rRNA methyltransferase [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
gi|451900706|gb|AGF75168.1| tRNA/rRNA methyltransferase [Bartonella vinsonii subsp. berkhoffii
str. Winnie]
Length = 284
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 17/188 (9%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK I S SNP +K L Q + R+ G +V G + + N ++Q L
Sbjct: 9 VKEIISLSNPIIKDLRALSQKKN-RNREGLFMVEGLKLVIDALNLGWTIQT--------L 59
Query: 139 LLDKVEVPEG-LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ K ++ ++N + TV V+K S + +E+I P +V I Q+
Sbjct: 60 IFSKSKMGNAAIENTAARTVANGGFVIK-----ASEKVMESITRRDNPQTVIGI-FKQQW 113
Query: 198 ADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ I + V LD ++DPGNLGT++RTA A GV L+ DPFS + +RA+
Sbjct: 114 RSLETIKGRITDVYVALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPETVRATM 173
Query: 257 GACFQLPI 264
G+ F +P+
Sbjct: 174 GSIFSIPL 181
>gi|433655418|ref|YP_007299126.1| rRNA methylase [Thermoanaerobacterium thermosaccharolyticum M0795]
gi|433293607|gb|AGB19429.1| rRNA methylase [Thermoanaerobacterium thermosaccharolyticum M0795]
Length = 256
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 23/185 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N +K KL + YR+ V G + E ++ DC + LD
Sbjct: 3 ITSEKNDLIKDIKKLSEKK-YRYEKKLFFVEGKNSVFEALKSGFEIKYVLASEDCDIDLD 61
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
VE + V + KK+S + + I +A++K+P + +
Sbjct: 62 -VE--------KDRLIFVDKGIFKKISDTVTPQMI--MAVVKMP-----------DYNVN 99
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
++LD +QDPGNLGT++R+A AF VF + D ++ KALR++ G+ F
Sbjct: 100 DLIKEDGLYIILDEVQDPGNLGTIIRSADAFNVDAVFTINNTVDVYNPKALRSTMGSIFH 159
Query: 262 LPIVS 266
LP+V+
Sbjct: 160 LPVVN 164
>gi|160893095|ref|ZP_02073883.1| hypothetical protein CLOL250_00641 [Clostridium sp. L2-50]
gi|156865178|gb|EDO58609.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp. L2-50]
Length = 268
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 11/185 (5%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
IT+ SNP +K+ KL +++S+R +V G RE+ +R Q +
Sbjct: 4 ITANSNPKIKNINKLNKNASFRKEEQVFIVEGIRMFREL-PVDRVKQ--VFVSETAYQRY 60
Query: 142 KVEVPE-GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
E+PE G+ V VS V + +S ++ + + A+ T I V K +
Sbjct: 61 GTELPEKGITEQDRRLVVVSDSVFRSMSQTKTPQGLLAVVERYHYTMEDLISVMDKRENG 120
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
++ LVL+ IQDPGNLGT++RTA A G+ + CD ++ K +R++ G F
Sbjct: 121 NTF-------LVLESIQDPGNLGTIVRTAEAADVTGIIIGGDSCDIYNPKVVRSTMGTIF 173
Query: 261 QLPIV 265
++P V
Sbjct: 174 RVPFV 178
>gi|87200913|ref|YP_498170.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
12444]
gi|87136594|gb|ABD27336.1| tRNA/rRNA methyltransferase [Novosphingobium aromaticivorans DSM
12444]
Length = 267
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 21/150 (14%)
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
LLD++E + +D + + ++ K++G ++ +++ + + TS+ ID N
Sbjct: 64 LLDELE--QAVDAAGGEVIELPLDILSKVTGKENPQAVAGV-FAEWDTSIRLIDRNAAPI 120
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
W LV ++DPGNLGT+LRTA A GG+ L+ C DPFS +A+RAS GA
Sbjct: 121 ----W-------LVAHAMRDPGNLGTMLRTADAVGAGGLILIDDCVDPFSVEAVRASMGA 169
Query: 259 CFQLPIVSGSWYHLEVLKDEFQMKLLAGHA 288
F + W DEF L AG
Sbjct: 170 IFTEKLAQARW-------DEFIAWLRAGEG 192
>gi|414153036|ref|ZP_11409363.1| Uncharacterized tRNA/rRNA methyltransferase YsgA [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411455418|emb|CCO07265.1| Uncharacterized tRNA/rRNA methyltransferase YsgA [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 265
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 22/192 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS NP +K+ KL Q + +R +V G + E + + R +C +
Sbjct: 3 LTSAQNPKIKYIRKLSQRA-FRQKEKKFVVEGIRLVEEALHSDW-------RTECFVYTA 54
Query: 142 K-VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEA-IALMKIPTSVFSI--DVNQKE 197
+ V+ P G ++ + R + + + +ESI A +A + P V ++ + +
Sbjct: 55 QAVQSPRGAHLLAKASQRGAQLF-------EVTESIMADLAATETPQGVLAVLWQPDYRL 107
Query: 198 ADCRSWF-PSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
D + PS+ ++ +DG+QDPGNLGT++R+A A GV LL G D ++ K LRA+
Sbjct: 108 PDLLAAARPSL--VVTVDGVQDPGNLGTIIRSADAAGADGVVLLKGTVDLYNPKTLRATM 165
Query: 257 GACFQLPIVSGS 268
G+ F LP+V+ +
Sbjct: 166 GSLFHLPVVTAA 177
>gi|365851695|ref|ZP_09392118.1| RNA methyltransferase, TrmH family [Lactobacillus parafarraginis
F0439]
gi|363716208|gb|EHL99619.1| RNA methyltransferase, TrmH family [Lactobacillus parafarraginis
F0439]
Length = 255
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 22/190 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++NITS N VK K+ Q+ R G ++ G + E ++SL D ++
Sbjct: 1 MQNITSNQNNRVKEWRKM-QTKKGRIKAGKYVIEGWHIVDEAIRHDKSL-------DAVM 52
Query: 139 LLDKVEVPE-GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ D + E +D+ +T T ++ V K +S ++ + + A+ + T + + +K
Sbjct: 53 VTDANYLDELNIDSTTTETYLITPEVAKHISATETPQGVFAV----LKTDDYHESIPEKL 108
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
SW L+LD IQDPGN+GT++RTA A GV G D ++ K +R+ +G
Sbjct: 109 GG--SW-------LLLDNIQDPGNIGTMVRTADAAGMNGVIFGKGSADIYNPKVVRSMQG 159
Query: 258 ACFQLPIVSG 267
+ F L + SG
Sbjct: 160 SQFHLRLYSG 169
>gi|398830554|ref|ZP_10588740.1| rRNA methylase [Phyllobacterium sp. YR531]
gi|398213991|gb|EJN00575.1| rRNA methylase [Phyllobacterium sp. YR531]
Length = 289
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 102/235 (43%), Gaps = 17/235 (7%)
Query: 65 DDADDGRKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFN 124
DD G A P VK +TS +NP VK L +R G L G + + +
Sbjct: 5 DDHHRGTGIAKPGKVKEVTSLTNPIVKDLRSL-ALKKFRDQQGVFLAEGLKLVIDALDLG 63
Query: 125 RSLQERTVRMDCLLLLDKVEVPEGL-DNISTHTVRVSSVVMKKLSGVQSSESIEAIALMK 183
+++ L+ K L + ++ TV V++ + + I AI
Sbjct: 64 WTIKT--------LVYSKAGKGNSLVEQVAARTVAKGGDVLE-----VNEKIISAITRRD 110
Query: 184 IPTSVFSIDVNQKEADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPG 242
P V + Q + P + + V LD ++DPGNLGT++RTA A G+ L+
Sbjct: 111 NPQMVVGV-FQQNLHALSAVRPEGNDVFVALDRVRDPGNLGTIIRTADAAGAKGIILIGD 169
Query: 243 CCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
DPFS + +RA+ G+ F +P++ + ++ FQ ++ H G + R +
Sbjct: 170 TTDPFSLETVRATMGSVFAVPLIRATESEFLAWREGFQGLIIGTHLKGAVDYRTI 224
>gi|395238205|ref|ZP_10416143.1| rRNA methylase [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477909|emb|CCI86120.1| rRNA methylase [Lactobacillus gigeriorum CRBIP 24.85]
Length = 255
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 19/192 (9%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ I S +N F+K+ KL Q YR G+ L+ G + E R + L+
Sbjct: 1 MERIDSINNKFIKNISKLEQKK-YREKTGTYLIEGFHLVEEALKAKRKYTFILATENALM 59
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ GLD V +S + + LS +S + I + + P + FS + +
Sbjct: 60 ---QAVASLGLDPNDNRIVLISQKIAEHLSATKSPQGIFMVLKISQPKN-FSFNYGK--- 112
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
W ++LD + DPGN+GT++RTA A + G+ L P D ++ K RA +G+
Sbjct: 113 ----W-------VMLDHLADPGNVGTIIRTADAAGFTGIILSPRSVDLYNSKVQRAMQGS 161
Query: 259 CFQLPIVSGSWY 270
F L +V G Y
Sbjct: 162 QFHLDLVVGDLY 173
>gi|424909275|ref|ZP_18332652.1| rRNA methylase [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392845306|gb|EJA97828.1| rRNA methylase [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 285
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 24/239 (10%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L Q R G+ + G + + +++ L
Sbjct: 14 QVKEVTSLANPIIKDIKALTQKKG-REETGTFMAEGLKLVIDALELGWTIK-------TL 65
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ + TV +V++ S + I +I P V I QK
Sbjct: 66 VYAKAAKGKPLVEQAAVKTVASGGLVLE-----VSEKVIASITRRDNPQMVVGI-FEQKW 119
Query: 198 ADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ P + LD ++DPGNLGT++RTA A GV L+ C DPFS + +RA+
Sbjct: 120 KPLKDIRPEKGETYIALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATM 179
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLCL 315
G+ F P+ S K + ++A H G+ + R++ +AG P+ +
Sbjct: 180 GSVFATPVARASVEEFLSWKKSAHVSVVATHLAGSVDYRKI---------DYAGKPVVI 229
>gi|332295141|ref|YP_004437064.1| tRNA/rRNA methyltransferase SpoU [Thermodesulfobium narugense DSM
14796]
gi|332178244|gb|AEE13933.1| tRNA/rRNA methyltransferase (SpoU) [Thermodesulfobium narugense DSM
14796]
Length = 253
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 66/109 (60%), Gaps = 6/109 (5%)
Query: 157 VRVSSVVMKKLSG-VQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDG 215
V++ + +++L V ++I+ ++ PT + S+ KE D FP ++ LD
Sbjct: 60 VKIFEIFLERLKFLVVKEDAIKRLSSESTPTGIISVGNLPKEKDF-GPFPWVY----LDK 114
Query: 216 IQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
IQDPGNLGT+LR+++AF GG+FL C+ ++ K +R+S GA F++P
Sbjct: 115 IQDPGNLGTILRSSLAFGCGGIFLSEDSCNIYNPKVIRSSAGAFFKVPF 163
>gi|325291775|ref|YP_004277639.1| rRNA methylase [Agrobacterium sp. H13-3]
gi|325059628|gb|ADY63319.1| rRNA methylase [Agrobacterium sp. H13-3]
Length = 286
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 24/239 (10%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L Q R G+ + G + + ++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTQKKG-REETGTFMAEGLKLVIDALELGWTIS-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ + TV +V++ S + I +I P V I +Q+
Sbjct: 67 VYAKAAKGKPLVEQAAVKTVASGGLVLE-----VSEKVIASITRRDNPQMVVGI-FDQRW 120
Query: 198 ADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ P + LD ++DPGNLGT++RTA A GV L+ C DPFS + +RA+
Sbjct: 121 KPLKDIRPEKGETYIALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLCL 315
G+ F P+ S K + ++A H G+ + R++ +AG P+ L
Sbjct: 181 GSVFATPVARASVEEFLSWKKSANVSVVATHLAGSVDYRKI---------DYAGKPVVL 230
>gi|333978111|ref|YP_004516056.1| TrmH family RNA methyltransferase [Desulfotomaculum kuznetsovii DSM
6115]
gi|333821592|gb|AEG14255.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 297
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 44/62 (70%)
Query: 205 PSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
P +L++DG+QDPGNLGT++R+A A GGV L PG D ++ K +RA+ G+ F LP+
Sbjct: 110 PGPSLLLLVDGVQDPGNLGTMIRSADAAGAGGVILFPGTVDLYNPKTIRATMGSLFHLPV 169
Query: 265 VS 266
V+
Sbjct: 170 VT 171
>gi|395788142|ref|ZP_10467718.1| hypothetical protein ME7_01053 [Bartonella birtlesii LL-WM9]
gi|395409924|gb|EJF76509.1| hypothetical protein ME7_01053 [Bartonella birtlesii LL-WM9]
Length = 282
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 99/227 (43%), Gaps = 29/227 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SN +K L Q + R+ G + G + N ++Q L
Sbjct: 9 VKEITSLSNSIIKDLRALSQKKN-RNREGLFMAEGLKLVINALNLGWTIQT--------L 59
Query: 139 LLDKVEVPE-GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ K ++ ++N + +TV V+K S + +E++ P +V I Q
Sbjct: 60 IFSKSKIGNTAIENTAAYTVANGGFVIK-----ASQKVMESLTRRDNPQTVIGIFKQQ-- 112
Query: 198 ADCRSWFP------SIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
W P + + V LD ++DPGNLGT++RTA A GV L+ DPFS +
Sbjct: 113 -----WHPLEMIKEQVKDVYVALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPE 167
Query: 251 ALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
+RA+ G+ F +P+ D F+ ++ H G + R +
Sbjct: 168 TVRATMGSIFSIPLYRCDESDFLNWSDHFKAMIVGTHLKGPTDYRSI 214
>gi|440225337|ref|YP_007332428.1| integration host factor subunit beta [Rhizobium tropici CIAT 899]
gi|440036848|gb|AGB69882.1| integration host factor subunit beta [Rhizobium tropici CIAT 899]
Length = 286
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 15/221 (6%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP VK L S R G+ L G + + +++ L
Sbjct: 15 QVKEVTSLANPIVKDIKALTVKKS-REESGAFLAEGLKLVIDALELGWTIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ ++ TV +V++ S + I +I P V + Q+
Sbjct: 67 VYAKAAKGKPLVEQVAAKTVAAGGLVLE-----VSEKVIGSITRRDNPQMVVGV-FEQRW 120
Query: 198 ADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
R P V LD ++DPGNLGT++RTA A GV L+ DPFS + +RA+
Sbjct: 121 QQLRDVKPKTGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGETTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
G+ F +P+V + K + ++ + A H G + R +
Sbjct: 181 GSVFAVPVVKATPEEFLAWKKKAEVSVFATHLAGAVDYRTI 221
>gi|302878948|ref|YP_003847512.1| tRNA/rRNA methyltransferase SpoU [Gallionella capsiferriformans
ES-2]
gi|302581737|gb|ADL55748.1| tRNA/rRNA methyltransferase (SpoU) [Gallionella capsiferriformans
ES-2]
Length = 258
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 21/187 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+I S NPF K +KL S+ R+ G L+ G ++ + + R + ++
Sbjct: 1 MKHIQSRDNPFYKELVKLTASTRNRNKAGQTLLDGAHLLKAYLDAGYT--PRHILLNAAA 58
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS-IDVNQKE 197
L D I++ R++ + +L +E E +K PT + + ID+ +
Sbjct: 59 LQDA--------EITSLRQRITGAPVTQLDDKLFAELSE----LKTPTGILALIDLPPAK 106
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
+ L+L+ +QDPGNLG++LR+A A VFL P C D +S K LRA+ G
Sbjct: 107 ------IVTARFALLLEAVQDPGNLGSMLRSAAAAGCDAVFLSPACADAWSPKVLRAAMG 160
Query: 258 ACFQLPI 264
F L I
Sbjct: 161 GHFCLAI 167
>gi|159184265|ref|NP_353372.2| rRNA methylase [Agrobacterium fabrum str. C58]
gi|159139592|gb|AAK86157.2| rRNA methylase [Agrobacterium fabrum str. C58]
Length = 286
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 24/239 (10%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L Q R G+ + G + + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTQKKG-REETGTFMAEGLKLVIDALELGWTIK-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ + TV +V++ S + I +I P V I QK
Sbjct: 67 VYAKAAKGKPLVEQAAVKTVASGGLVLE-----VSEKVIASITRRDNPQMVVGI-FEQKW 120
Query: 198 ADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ P + LD ++DPGNLGT++RTA A GV L+ C DPFS + +RA+
Sbjct: 121 KPLKDIRPEKGETYIALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLCL 315
G+ F P+ S K + ++A H G+ + R++ +AG P+ +
Sbjct: 181 GSVFATPVARASVEEFLSWKKSAHVSVVATHLAGSVDYRKI---------DYAGKPVVI 230
>gi|407473375|ref|YP_006787775.1| tRNA/rRNA methyltransferase SpoU [Clostridium acidurici 9a]
gi|407049883|gb|AFS77928.1| tRNA/rRNA methyltransferase SpoU [Clostridium acidurici 9a]
Length = 271
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 42/56 (75%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
++VLD +QDPGN+GT++RTA AF G+ + GC D ++ K +R++ G+ FQ+PIV
Sbjct: 122 LIVLDRVQDPGNMGTIIRTADAFGANGIIVTSGCVDIYNPKTIRSTMGSIFQIPIV 177
>gi|326388507|ref|ZP_08210101.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
19370]
gi|326206972|gb|EGD57795.1| tRNA/rRNA methyltransferase [Novosphingobium nitrogenifigens DSM
19370]
Length = 279
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 100/213 (46%), Gaps = 27/213 (12%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRH-----SHGSALVVGTTPIREIYNFNRSLQERTVRM 134
K IT SNP +K LR R + G L+ T RE L + R
Sbjct: 16 KIITGYSNPTIKFVRSLRDKKHRRREERFLAEGLRLL---TDAREGGRLPEILLMASGRD 72
Query: 135 DCLLL--LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID 192
+ LL L++ V G D + V + ++ K++G + +++ + + T + +ID
Sbjct: 73 EHPLLSDLEQAVVESGGD-----VIEVPTDILAKVTGKDNPQAVAGV-YAEWDTGLSTID 126
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
+K A W LV+ ++DPGNLGT+LRTA A GG+ LL C DPFS +A+
Sbjct: 127 --RKAAPI--W-------LVVQAMRDPGNLGTMLRTADAVGAGGLILLDDCADPFSVEAV 175
Query: 253 RASRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
RAS GA F + W + + + +L+A
Sbjct: 176 RASMGAIFTQRLAQARWAEFQEWLRQGEGQLVA 208
>gi|121534244|ref|ZP_01666069.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans
Nor1]
gi|121307347|gb|EAX48264.1| tRNA/rRNA methyltransferase (SpoU) [Thermosinus carboxydivorans
Nor1]
Length = 270
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
I+VLD +QDPGN+GT++RTA A GV L GC D FS K +RA+ G+ F LP+++G
Sbjct: 120 IVVLDNVQDPGNVGTVVRTADAAGCCGVILTKGCADLFSGKTVRATMGSLFHLPVITG 177
>gi|420157142|ref|ZP_14663982.1| RNA methyltransferase, TrmH family [Clostridium sp. MSTE9]
gi|394757152|gb|EJF40211.1| RNA methyltransferase, TrmH family [Clostridium sp. MSTE9]
Length = 270
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 88/200 (44%), Gaps = 37/200 (18%)
Query: 75 LPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT----------TPIREIYNFN 124
+P V ITS N +K KLR S+S+R + L G I ++
Sbjct: 2 MPCQV--ITSRKNEIIKTAAKLRDSASFRREQNTFLAEGARLCADAADSGLLIHSVFYTE 59
Query: 125 RSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKI 184
R+ ++ ++ + K E +++ V + LS + + + A ++
Sbjct: 60 RAGEKYASYLE--RIFPKAE----------QMYQIADSVAELLSDTRQPQGVYCTA--EL 105
Query: 185 PTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCC 244
P + ++ Q + C L L+ IQDP NLG +LRTA A GV L CC
Sbjct: 106 PKRTAAAELGQ--SGC---------YLALEEIQDPSNLGAVLRTAEALGVSGVVLAGSCC 154
Query: 245 DPFSEKALRASRGACFQLPI 264
DP+ KALRA GA F+LP+
Sbjct: 155 DPYGAKALRAGMGAVFRLPL 174
>gi|293400857|ref|ZP_06645002.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|373451747|ref|ZP_09543666.1| hypothetical protein HMPREF0984_00708 [Eubacterium sp. 3_1_31]
gi|291305883|gb|EFE47127.1| RNA methyltransferase, TrmH family [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|371967968|gb|EHO85435.1| hypothetical protein HMPREF0984_00708 [Eubacterium sp. 3_1_31]
Length = 243
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 43/57 (75%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+I++LDG+QDPGNLGT+LRTA++F + + L D ++EK +R+++GA F L I+
Sbjct: 100 KIIILDGVQDPGNLGTILRTALSFSYQTILLSKNSVDVYNEKVIRSTQGALFHLNII 156
>gi|16330947|ref|NP_441675.1| rRNA methylase [Synechocystis sp. PCC 6803]
gi|383322689|ref|YP_005383542.1| rRNA methylase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325858|ref|YP_005386711.1| rRNA methylase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491742|ref|YP_005409418.1| rRNA methylase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384437009|ref|YP_005651733.1| rRNA methylase [Synechocystis sp. PCC 6803]
gi|451815105|ref|YP_007451557.1| rRNA methylase [Synechocystis sp. PCC 6803]
gi|3915481|sp|P74261.1|Y1673_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr1673
gi|1653441|dbj|BAA18355.1| rRNA methylase [Synechocystis sp. PCC 6803]
gi|339274041|dbj|BAK50528.1| rRNA methylase [Synechocystis sp. PCC 6803]
gi|359272008|dbj|BAL29527.1| rRNA methylase [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359275178|dbj|BAL32696.1| rRNA methylase [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359278348|dbj|BAL35865.1| rRNA methylase [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|451781074|gb|AGF52043.1| rRNA methylase [Synechocystis sp. PCC 6803]
Length = 274
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 73 FALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTV 132
+ L + +ITST NP VK +L Q+ R G L+ GT + Q +
Sbjct: 2 YPLTSDIASITSTQNPLVKQLRQLHQTKG-RKQQGQLLLEGTHLLEVALA-----QGKGF 55
Query: 133 RMDCLLLLDKVEVPEGLDNI---STHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVF 189
C + + + P D + S H+ VS V+ K++ + + + A M
Sbjct: 56 NHGCFTAMWQEKNPVLADRLMAQSVHSYLVSGEVLAKMASTVNPDGVVATLTM------- 108
Query: 190 SIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
+ RS P LVL+ +QDPGNLGT+LRTA A G++L C DP S
Sbjct: 109 -------DQFWRSPPPHARLGLVLERLQDPGNLGTILRTAAATGVEGIWLTADCVDPTSP 161
Query: 250 KALRASRG 257
K LR+S G
Sbjct: 162 KVLRSSAG 169
>gi|309792162|ref|ZP_07686634.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG-6]
gi|308225703|gb|EFO79459.1| tRNA/rRNA methyltransferase (SpoU) [Oscillochloris trichoides DG6]
Length = 284
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 39/54 (72%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
L+LD IQDPGNLGTLLR+A A G V PGC DPF+ K +RA+ GA F LP+
Sbjct: 138 LILDAIQDPGNLGTLLRSAEAAGVGWVVCAPGCADPFAPKVVRAAMGAHFNLPL 191
>gi|238927108|ref|ZP_04658868.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC
43531]
gi|238885088|gb|EEQ48726.1| TrmH family rRNA methyltransferase [Selenomonas flueggei ATCC
43531]
Length = 276
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 23/196 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSL-----QERTVR 133
++ ITS NP ++ L +S V G N ++ E ++
Sbjct: 4 IEIITSAENPLIRRLAMLIRSPRRAVKENVFFVEGLRLAEMAVQSNWAILHAVVTEHAMK 63
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALM--KIPTSVFSI 191
M+ + LL L +S + ++SV + S ++S + I L+ ++P +
Sbjct: 64 MERMQLL--------LTKLSARNIPIASVSERLFSACSETDSPQGIILLLQRLPCTPLEE 115
Query: 192 DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
V E + L LD +QDPGN+GT+LRTA A GV LL GC D + K
Sbjct: 116 MVQVTE--------GLPLYLALDRVQDPGNVGTILRTADAAGASGVILLRGCADVYGSKV 167
Query: 252 LRASRGACFQLPIVSG 267
+RA+ G+ F LP V+G
Sbjct: 168 VRAAMGSLFYLPFVTG 183
>gi|163867316|ref|YP_001608510.1| TrmH family tRNA methyltransferase [Bartonella tribocorum CIP
105476]
gi|161016957|emb|CAK00515.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
tribocorum CIP 105476]
Length = 284
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 17/189 (8%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK ITS SNP +K L Q + R+ G + G + + N ++Q
Sbjct: 8 RVKEITSLSNPIIKDLKALSQKKN-RNREGLFMAEGLKLVIDALNLGWTIQT-------- 58
Query: 138 LLLDKVEVPEG-LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
L+ K E+ ++N + V V+K S + +E++ P +V I QK
Sbjct: 59 LIFSKSEIGNATIENTAARAVANGGFVIK-----ASQKVMESLTRRDNPQTVIGI-FKQK 112
Query: 197 EADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
+ + LD ++DPGNLGT++RTA A GV L+ DPFS + +RA+
Sbjct: 113 WQSLEMITGQAKDVYIALDRVRDPGNLGTIIRTADAVSAKGVILIGETTDPFSPETVRAT 172
Query: 256 RGACFQLPI 264
G+ F +P+
Sbjct: 173 MGSIFSIPL 181
>gi|319892126|ref|YP_004149001.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03]
gi|317161822|gb|ADV05365.1| rRNA methylase [Staphylococcus pseudintermedius HKU10-03]
Length = 248
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 25/186 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS NP +K+ KL++ R G A++ G I E E + + L
Sbjct: 1 MEAITSIQNPKIKNYNKLKKKKE-RDKQGLAILEGFHLIEEAV-------ESQIMVTQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+++ VP L + ++ V + LSG + P +F+I + + +
Sbjct: 53 MIEPSRVPTELIEAAEEVYEITQKVAETLSGTVT------------PQGIFAI-IEKPQV 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D + ++L+LD IQDPGNLGT++RTA A + + G D + +K LRAS+G+
Sbjct: 100 DVTAA----KQVLILDRIQDPGNLGTMIRTADAAGLDLIVMTKGTADVYQDKVLRASQGS 155
Query: 259 CFQLPI 264
F +PI
Sbjct: 156 VFHIPI 161
>gi|421544414|ref|ZP_15990490.1| tRNA/rRNA methyltransferase [Neisseria meningitidis NM140]
gi|421546526|ref|ZP_15992571.1| tRNA/rRNA methyltransferase [Neisseria meningitidis NM183]
gi|421548777|ref|ZP_15994801.1| tRNA/rRNA methyltransferase [Neisseria meningitidis NM2781]
gi|421552730|ref|ZP_15998702.1| tRNA/rRNA methyltransferase [Neisseria meningitidis NM576]
gi|402322771|gb|EJU58221.1| tRNA/rRNA methyltransferase [Neisseria meningitidis NM183]
gi|402323605|gb|EJU59047.1| tRNA/rRNA methyltransferase [Neisseria meningitidis NM140]
gi|402325456|gb|EJU60865.1| tRNA/rRNA methyltransferase [Neisseria meningitidis NM2781]
gi|402329909|gb|EJU65258.1| tRNA/rRNA methyltransferase [Neisseria meningitidis NM576]
Length = 261
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 38/198 (19%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIR----------EIYNFNRSLQ 128
+K+I+S +N ++H +L +R + ++ G ++ E+Y +
Sbjct: 1 MKHISSINNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGMPTEVYIPEGKMP 60
Query: 129 ERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSV 188
+R + VPEG VS ++KK+S + ++ I +AL+ IP
Sbjct: 61 SEEIRRL------RAVVPEG------RIFSVSDGILKKISSLSCADDI--LALIDIPLGG 106
Query: 189 FSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFS 248
D + DC +VLDG+QDPGN+GT+LR+A A G V L G D +S
Sbjct: 107 TLPD----KGDC----------VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWS 152
Query: 249 EKALRASRGACFQLPIVS 266
K LRA GA F L I S
Sbjct: 153 PKVLRAGMGAHFLLDIYS 170
>gi|114706460|ref|ZP_01439362.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506]
gi|114538321|gb|EAU41443.1| rRNA methylase protein, TrmH family [Fulvimarina pelagi HTCC2506]
Length = 284
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 93/195 (47%), Gaps = 15/195 (7%)
Query: 71 RKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQER 130
R + P VK I+ST+NP VK L Q +R G L G + + + ++
Sbjct: 10 RSVSAPGRVKEISSTANPIVKDIRALVQKK-HRDETGLFLAEGLKLVIDALDAGWEIE-- 66
Query: 131 TVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS 190
L++ + L ++ TV + + +++ + + +EAI P +
Sbjct: 67 -----TLVVARAAQDSALLHKTASRTVALGADLIE-----ANHKVLEAITRRDNPQNAVG 116
Query: 191 IDVNQKEADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
+ +K P + +LV LD ++DPGNLGT+LRTA A GV L+ DPFS
Sbjct: 117 V-FRKKTVPLERLAPKPNEVLVALDRVRDPGNLGTVLRTADAVGAKGVVLVGETVDPFSL 175
Query: 250 KALRASRGACFQLPI 264
+A+RA+ G+ F +P+
Sbjct: 176 EAVRATMGSIFAVPV 190
>gi|416998822|ref|ZP_11939491.1| RNA methyltransferase, TrmH family [Veillonella parvula
ACS-068-V-Sch12]
gi|333976975|gb|EGL77834.1| RNA methyltransferase, TrmH family [Veillonella parvula
ACS-068-V-Sch12]
Length = 264
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 31/191 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFN-------RSLQERTVRM 134
I S N +K + L Q + R +G +V G IR+I R + + +
Sbjct: 4 IQSKDNKTIKRIISLGQRKN-RQKYGEYIVEGIRSIRDIAAMGAVKTIVIRESKAQDQNI 62
Query: 135 DCLLLLDKVE-VPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
LL LD V+ VP+ + + K+ + + + AI V
Sbjct: 63 LDLLDLDTVQFVPKFI---------AQDPIFDKVDNTVNGQGVVAI-------------V 100
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
++ + D S + LDG+QDPGNLGT++RTA+A G+FL+ G DPF++K +R
Sbjct: 101 SKPKYDMESIHIDDGLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVR 160
Query: 254 ASRGACFQLPI 264
++ A ++P+
Sbjct: 161 STMSALHKIPL 171
>gi|393771421|ref|ZP_10359893.1| rRNA methylase [Novosphingobium sp. Rr 2-17]
gi|392723185|gb|EIZ80578.1| rRNA methylase [Novosphingobium sp. Rr 2-17]
Length = 267
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 92/210 (43%), Gaps = 26/210 (12%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT---TPIREIYNFNRSLQERTVRMDC 136
++IT SNP VK LR YR L G T RE L T R +
Sbjct: 5 RHITGFSNPLVKFLRSLRDKK-YRKRERRFLAEGLRLLTDARESGIVPEILVMATGR-EA 62
Query: 137 LLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
LLD +E + V + ++ K++G + +++ + + TS+ ++D
Sbjct: 63 HPLLDSLE--RAVIAAGGDVVEMDLEILAKVTGKDNPQAVAGV-FTEFDTSLSALDRQAA 119
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
W LV ++DPGNLGT+LRT A GG+ LL C DPFS +A+RAS
Sbjct: 120 PI----W-------LVAQALRDPGNLGTMLRTGDAVGAGGLILLDDCADPFSVEAVRASM 168
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAG 286
GA F + W DEF L AG
Sbjct: 169 GAIFTQKLALARW-------DEFIGWLRAG 191
>gi|325847687|ref|ZP_08170010.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325480899|gb|EGC83951.1| RNA methyltransferase, TrmH family [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 243
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 74/137 (54%), Gaps = 22/137 (16%)
Query: 143 VEVPEGLDNISTHTVRV--SSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
V V E + + T ++ S+ + KLS +++ E + A+ MK ++KE
Sbjct: 49 VFVNEDMKDYKTDFKKIVFSNNLFDKLSLLENPEGVSAVIKMK----------DKKEISS 98
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
+ ++L+LD +QDPGNLGT++R+A AF + + L C D ++EK +RAS G+ F
Sbjct: 99 K-------KVLLLDHMQDPGNLGTIIRSAEAFSFKDIIFLNNCVDLYNEKTIRASMGSIF 151
Query: 261 QLPIVSGSWYHLEVLKD 277
+L + LE +KD
Sbjct: 152 RLNFID---LELEDVKD 165
>gi|154484294|ref|ZP_02026742.1| hypothetical protein EUBVEN_02007 [Eubacterium ventriosum ATCC
27560]
gi|149734771|gb|EDM50688.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium ventriosum
ATCC 27560]
Length = 255
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 93/204 (45%), Gaps = 32/204 (15%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN +K ++L++ S R + G+ V G EI + L
Sbjct: 3 ITSTSNEQIKKLIQLKEKSKVRKTTGTFTVEGKKMFVEIPAED---------------LV 47
Query: 142 KVEVPEGLDNISTHTVR------VSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
V V E + V+ VS V KK+S + + I A+ K + + I+
Sbjct: 48 SVYVSETFLKENGELVKEKKYQIVSDQVFKKISDTVTPQGIVAVVKQKSYSIDYIIEKRN 107
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
KE C I+VLD +QDPGN+GT++RT A G+ + D ++ K +R++
Sbjct: 108 KEKSC---------IVVLDRLQDPGNMGTIVRTGEAAGISGIIMSKDSADIYNPKVIRST 158
Query: 256 RGACFQLP--IVSGSWYHLEVLKD 277
G+ F++P IV ++ LKD
Sbjct: 159 MGSIFRVPFAIVDDLAAAVDTLKD 182
>gi|319898202|ref|YP_004158295.1| tRNA/rRNA methyltransferase [Bartonella clarridgeiae 73]
gi|319402166|emb|CBI75692.1| tRNA/rRNA methyltransferase protein; TrmH family [Bartonella
clarridgeiae 73]
Length = 282
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 15/220 (6%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SNP +K LK R+ G G + + N ++Q V + L
Sbjct: 9 VKEITSLSNPIIKD-LKALNKKKNRNREGIFTAEGLKLVIDALNLGWTIQTLIVSKNSL- 66
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++N + +T+ V+K S + +E+I P V I Q+
Sbjct: 67 ------NNTIIENAAANTIANGGSVIK-----ASQKVLESITHRDNPQKVVGI-FKQQWH 114
Query: 199 DCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
++ + + + LD ++DPGNLGT++RTA A G+FL+ DPFS + +RA+ G
Sbjct: 115 SIKTIIRRVDDVYIALDRVRDPGNLGTIIRTADAVGAKGIFLIGETTDPFSLETVRATMG 174
Query: 258 ACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
+ F +P+ + F+ ++ H G+ + R +
Sbjct: 175 SIFSIPLYRCNESAFLNWSTNFKGMIVGTHLKGSVDYRAI 214
>gi|395792660|ref|ZP_10472084.1| hypothetical protein MEI_00705 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|395432217|gb|EJF98206.1| hypothetical protein MEI_00705 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 284
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 19/189 (10%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SNP +K+ L Q + R+ G + G + + N ++Q L
Sbjct: 9 VKEITSLSNPIIKNLRALSQKKN-RNREGLFMAEGLKLVIDALNLGWTIQT--------L 59
Query: 139 LLDKVEVPEG-LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ K ++ ++N + TV V+K S + +E+I P +V I Q +
Sbjct: 60 IFSKSKIGNAAIENTAARTVANGGFVIK-----ASEKVMESITHRDNPQTVVGIFKQQWQ 114
Query: 198 A--DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
+ + ++ + L+ ++DPGNLGT++RTA A GV L+ DPFS + +RA+
Sbjct: 115 SLETIKGRVTDVY--VALERVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPETVRAT 172
Query: 256 RGACFQLPI 264
G+ F +P+
Sbjct: 173 MGSIFSIPL 181
>gi|417644138|ref|ZP_12294155.1| RNA methyltransferase, TrmH family [Staphylococcus warneri VCU121]
gi|445059994|ref|YP_007385398.1| RNA methyltransferase [Staphylococcus warneri SG1]
gi|330685097|gb|EGG96763.1| RNA methyltransferase, TrmH family [Staphylococcus epidermidis
VCU121]
gi|443426051|gb|AGC90954.1| RNA methyltransferase [Staphylococcus warneri SG1]
Length = 246
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 24/163 (14%)
Query: 107 GSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKK 166
G AL+ G I E Y + + ++ L ++D L + T ++ V +
Sbjct: 28 GLALIEGVHLIEEAY-------QSGLVIEQLFVVDPSRTDSSLIEYANETFEINLKVAES 80
Query: 167 LSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLL 226
LSG + P F++ + + + D + ++L++D IQDPGNLGTL+
Sbjct: 81 LSGTVT------------PQGFFAV-IKKPDYDITTA----KQVLLIDRIQDPGNLGTLI 123
Query: 227 RTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSW 269
RTA A + + G DP+ +K LRAS+G+ F +P++S S
Sbjct: 124 RTADAAGIDLIVMEKGTADPYQDKVLRASQGSVFHIPVISESL 166
>gi|340056474|emb|CCC50807.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 576
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 85/183 (46%), Gaps = 22/183 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I + ++H KLRQ+ YR S +V G +RE+++ Q T R LLL +
Sbjct: 115 INDQRHHLIEHFTKLRQNPKYRCSKQMMIVGGKEILRELFD-----QGYTPRH--LLLRE 167
Query: 142 KVEVPE--GLDNISTHTVRVSSVVMKKLSGVQSSES-IEAIALMKIPTSVFSIDVNQKEA 198
+ PE + T VRV + + + V ++ I + + P I Q+
Sbjct: 168 GHDAPEWSKRKGVKTEVVRVDRRIAE--ACVPGNDGFIGDFNIPEPPPKEHLISNKQR-- 223
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
R+LVLD + DPG LGT+LRTA AF + V C D + + +RA+RGA
Sbjct: 224 --------FERVLVLDNVDDPGLLGTMLRTAAAFHYDVVITTNHCADLYDHRVVRAARGA 275
Query: 259 CFQ 261
FQ
Sbjct: 276 HFQ 278
>gi|222084674|ref|YP_002543203.1| rRNA methylase [Agrobacterium radiobacter K84]
gi|398379612|ref|ZP_10537732.1| rRNA methylase [Rhizobium sp. AP16]
gi|221722122|gb|ACM25278.1| rRNA methylase protein [Agrobacterium radiobacter K84]
gi|397722244|gb|EJK82788.1| rRNA methylase [Rhizobium sp. AP16]
Length = 286
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 97/221 (43%), Gaps = 15/221 (6%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L S R G+ L G + + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTNKKS-REESGAFLAEGLKLVIDALELGWTIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ ++ TV +V++ S + I +I P V I +Q+
Sbjct: 67 VYAKAAKGKPLVEQVAAKTVAAGGLVLE-----VSEKVIASITRRDNPQMVVGI-FDQRW 120
Query: 198 ADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
R P V LD ++DPGNLGT++RTA A GV L+ DPFS + +RA+
Sbjct: 121 RPLRDVRPKAGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGETTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
G+ F +P+V + K + ++A H G + R +
Sbjct: 181 GSVFAVPVVKATPEEFLAWKKTAGVSVVATHLAGAVDYRTI 221
>gi|452975425|gb|EME75244.1| tRNA/rRNA methyltransferase YsgA [Bacillus sonorensis L12]
Length = 248
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 99/201 (49%), Gaps = 27/201 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VK KL + R + L+ G + E +++E ++
Sbjct: 1 MKRIESAKNQKVKDWKKL-HTKKERTKTNTFLIEGEHLVEEALKTPGNVKE-------IM 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++++ ++P GLD V VS ++ S+E+ AI + P +V ++ ++
Sbjct: 53 VMEEADLPAGLD------VSVSCYIL-------SAEAFSAITETETPQAVAAVCQMPEQG 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ ++L+ D +QDPGNLGT++RTA A V + G DP++ K LR+++G+
Sbjct: 100 PFQ-----YEKLLLADAVQDPGNLGTIIRTADAAGIDAVVVGHGTVDPYNAKTLRSAQGS 154
Query: 259 CFQLPIVSGSWYHL-EVLKDE 278
F +PI+ L E LK++
Sbjct: 155 HFHIPIIKAELSGLIEELKEK 175
>gi|169824566|ref|YP_001692177.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328]
gi|167831371|dbj|BAG08287.1| 23S rRNA methyltransferase [Finegoldia magna ATCC 29328]
Length = 256
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 35/202 (17%)
Query: 75 LPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRM 134
L +K ITSTSN KH L + YR + ++ G +E N ++++ +R
Sbjct: 8 LKQAIKMITSTSNKIYKHVKSLYKKK-YRQKYNEFVIEGYKLYQEAIKSNLNIKQVIIR- 65
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
EG +N V S LS + + E I + +
Sbjct: 66 ------------EG-ENFLDECVYFDSKTFNSLSEMNNPEGIICVVSF----------IE 102
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
QK D +S +IL L+ I DPGNLGT++R+A AF + + L CD ++ K +R+
Sbjct: 103 QK--DVKS-----DQILFLENINDPGNLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRS 155
Query: 255 SRGACFQLPIVSGSWYHLEVLK 276
+ G+ F++ I S+ ++ VL+
Sbjct: 156 AMGSLFRMNI---SYENINVLE 174
>gi|323141055|ref|ZP_08075960.1| putative RNA methyltransferase, TrmH family, group 3
[Phascolarctobacterium succinatutens YIT 12067]
gi|322414431|gb|EFY05245.1| RNA methyltransferase, TrmH family, group 3 [Phascolarctobacterium
succinatutens YIT 12067]
Length = 261
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 91/201 (45%), Gaps = 31/201 (15%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYN-------FNRSLQERTVR 133
+T NP VK +L+Q YR G L G + E F ++++ R
Sbjct: 2 ELTGLQNPMVKAAAELKQKK-YRQQQGLFLAEGLRTVEEAVRYGAVQSIFYTAIEDDRTR 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
V E V VS V+KK++ ++ + I A+ M+
Sbjct: 61 ----------AVLEEAAAKQIKLVCVSDKVLKKIADTETPQGIIAVCEMR---------- 100
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
K D + S +LVLD + DPGN+GT+LRTA A GG+ LL GC D ++ K +R
Sbjct: 101 -SKRLD--EFLASGKMLLVLDRVTDPGNIGTMLRTADAAGVGGLLLLQGCADIYAPKTVR 157
Query: 254 ASRGACFQLPIVSGSWYHLEV 274
AS G+ F LP++SG L V
Sbjct: 158 ASMGSLFHLPVLSGLSEELLV 178
>gi|395782174|ref|ZP_10462578.1| hypothetical protein MCY_00975 [Bartonella rattimassiliensis 15908]
gi|395419113|gb|EJF85414.1| hypothetical protein MCY_00975 [Bartonella rattimassiliensis 15908]
Length = 282
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK ITS SNP +K L Q + R+ G + G + + N ++Q
Sbjct: 8 RVKEITSLSNPIIKKLKALSQKKN-RNKEGLFMAEGLKLVIDALNLGWTIQT-------- 58
Query: 138 LLLDKVEVPEG-LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
L+ K ++ ++N + V + V+K S + +E++ P +V I QK
Sbjct: 59 LIFSKSKIGNAAIENTAARAVANGAFVIK-----ASQKVMESLTRRDNPQTVIGI-FKQK 112
Query: 197 EADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
+ + + LD ++DPGNLGT++RTA A GV L+ DPFS + +RA+
Sbjct: 113 WQPFEIITEQVKDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSPETVRAT 172
Query: 256 RGACFQLPI 264
G+ F +P+
Sbjct: 173 MGSIFSIPL 181
>gi|259046651|ref|ZP_05737052.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC
49175]
gi|259036816|gb|EEW38071.1| TrmH family RNA methyltransferase [Granulicatella adiacens ATCC
49175]
Length = 256
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 108/212 (50%), Gaps = 26/212 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+++I+S N +K +KL Q++ R G L+ G + E +++ER ++
Sbjct: 1 MESISSPKNEKIKELVKL-QTAKGRKKAGMYLLEGEHLVEE------AIKERAQIKLIVV 53
Query: 139 LLDKVEVPEGL-DNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+++E + L + VS V KLS ++++ I A+ +++ ++E
Sbjct: 54 TSNRLEDYKNLLAQTDVQVLVVSQDVFHKLSMTETAQGILAV-----------VEIVKQE 102
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
P R +VLD +QDPGNLGT++RTA A + V L G D +++K LR+ +G
Sbjct: 103 -----ILPHKGRFIVLDAVQDPGNLGTIVRTADAAGFDAVVLGTGTVDLYNDKVLRSMQG 157
Query: 258 ACFQLPIVSGSWY-HLEVLKDE-FQMKLLAGH 287
+ F +P+ + +L +LK++ Q+ + A H
Sbjct: 158 SHFHIPVFQANLQEYLPILKEKGVQVAVTALH 189
>gi|357039267|ref|ZP_09101061.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum gibsoniae DSM
7213]
gi|355358166|gb|EHG05934.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum gibsoniae DSM
7213]
Length = 267
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 71/126 (56%), Gaps = 16/126 (12%)
Query: 159 VSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQD 218
V + +L+ +S + + A+A ++P +D++ + R W +L++DGI+D
Sbjct: 78 VEDALFHELADTESPQGVMAVA--RVPVG---MDMDPQVWTDRGW----DLLLLVDGIRD 128
Query: 219 PGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDE 278
PGNLGT++R+A A GGV ++ G DP++ K LR++ G+ F +PI L VLK E
Sbjct: 129 PGNLGTIIRSADAAGAGGVLVMHGSVDPYNAKTLRSTMGSIFHVPI-------LPVLKPE 181
Query: 279 FQMKLL 284
+ L
Sbjct: 182 VLLSQL 187
>gi|212697338|ref|ZP_03305466.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM
7454]
gi|212675787|gb|EEB35394.1| hypothetical protein ANHYDRO_01907 [Anaerococcus hydrogenalis DSM
7454]
Length = 243
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 67/121 (55%), Gaps = 20/121 (16%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGI 216
+ S+ + KLS +++ E + A+ MK ++KE + ++L+LD +
Sbjct: 65 IVFSNNLFDKLSLLENPEGVSAVLKMK----------DKKEISSK-------KVLLLDHM 107
Query: 217 QDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLK 276
QDPGNLGT++R+A AF + + L C D ++EK +RAS G+ F+L + LE +K
Sbjct: 108 QDPGNLGTIIRSAEAFSFKDIIFLNNCVDLYNEKTIRASMGSIFRLNFID---LELEDVK 164
Query: 277 D 277
D
Sbjct: 165 D 165
>gi|239636367|ref|ZP_04677369.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603]
gi|239597722|gb|EEQ80217.1| RNA methyltransferase, TrmH family [Staphylococcus warneri L37603]
Length = 246
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 24/163 (14%)
Query: 107 GSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKK 166
G AL+ G I E Y + + ++ L ++D L + T ++ V +
Sbjct: 28 GLALIEGVHLIEEAY-------QSGLVIEQLFVVDPSRTDSDLIEYANETFEINLKVAES 80
Query: 167 LSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLL 226
LSG + P F++ + + + D + ++L++D IQDPGNLGTL+
Sbjct: 81 LSGTVT------------PQGFFAV-IKKPDYDVTTA----KQVLLIDRIQDPGNLGTLI 123
Query: 227 RTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSW 269
RTA A + + G DP+ +K LRAS+G+ F +P++S S
Sbjct: 124 RTADAAGIDLIVMEKGTADPYQDKVLRASQGSVFHIPVISESL 166
>gi|421540402|ref|ZP_15986548.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 93004]
gi|433507190|ref|ZP_20464098.1| spoU rRNA Methylase family protein [Neisseria meningitidis 9757]
gi|402319039|gb|EJU54551.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 93004]
gi|432241555|gb|ELK97084.1| spoU rRNA Methylase family protein [Neisseria meningitidis 9757]
Length = 261
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 30/212 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVR 133
+K+I+ST+N ++H +L +R + ++ G ++ R + E +
Sbjct: 1 MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEGKMP 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ + L V VPE VS ++KK+S + ++ + +AL+ IP +
Sbjct: 61 SEEVRRLRAV-VPE------DRVFSVSDGILKKISSLTCADDV--LALIDIPDA------ 105
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
P+ +VLDG+QDPGN+GT+LR+A A G V L G D +S K LR
Sbjct: 106 --------GALPAGGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLR 157
Query: 254 ASRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
A GA F L I S + LE+ ++ ++ A
Sbjct: 158 AGMGAHFLLDIYSQA--DLEIWLASYKGRVFA 187
>gi|282850185|ref|ZP_06259564.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745]
gi|294791837|ref|ZP_06756985.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27]
gi|294793698|ref|ZP_06758835.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44]
gi|282579678|gb|EFB85082.1| RNA methyltransferase, TrmH family [Veillonella parvula ATCC 17745]
gi|294455268|gb|EFG23640.1| RNA methyltransferase, TrmH family [Veillonella sp. 3_1_44]
gi|294457067|gb|EFG25429.1| RNA methyltransferase, TrmH family [Veillonella sp. 6_1_27]
Length = 264
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 31/191 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFN-------RSLQERTVRM 134
I S N +K + L Q + R +G +V G IR+I R + + +
Sbjct: 4 IQSKDNKTIKRIISLGQRKN-RQKYGEYIVEGIRSIRDIAAMGAVKTIVIRESKAQDKHV 62
Query: 135 DCLLLLDKVE-VPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
LL LD V+ VP+ + + K+ + + + AI V
Sbjct: 63 LDLLDLDTVQFVPKFI---------AQDPIFDKVDNTVNGQGVVAI-------------V 100
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
++ + D S + LDG+QDPGNLGT++RTA+A G+FL+ G DPF++K +R
Sbjct: 101 SKPKYDMESIHIDDGLYITLDGVQDPGNLGTIIRTAVAAGVKGIFLMKGTVDPFNDKTVR 160
Query: 254 ASRGACFQLPI 264
++ A ++P+
Sbjct: 161 STMSALHKIPL 171
>gi|336436170|ref|ZP_08615883.1| hypothetical protein HMPREF0988_01468 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336008210|gb|EGN38229.1| hypothetical protein HMPREF0988_01468 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 211
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 92/187 (49%), Gaps = 21/187 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITST N VK ++L++ S R+ G LV G I+E+ ++R L+
Sbjct: 2 ITSTGNQKVKEIIQLQKKSRARNQAGIFLVEGLRMIQEVP------KDR---------LE 46
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQ--SSESIEAIALMKIPTSVFSIDVNQKEAD 199
K+ V EG + + + + +G++ S A++ K P V I V + E
Sbjct: 47 KLYVSEGF--YQKYRAELEAEGFTERTGIELVSDHVFAAMSDTKTPQGVLGI-VRRAEYT 103
Query: 200 CRSWF-PSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ + ++VLD +QDPGNLGT+ RTA A G+ + C D ++ K +R++ GA
Sbjct: 104 AETLMGQAAPFLMVLDNLQDPGNLGTIFRTAEAAGVTGIVMSRDCVDIYNPKTIRSTMGA 163
Query: 259 CFQLPIV 265
+++P +
Sbjct: 164 IYRMPFL 170
>gi|205374405|ref|ZP_03227202.1| rRNA methylase [Bacillus coahuilensis m4-4]
Length = 247
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 12/86 (13%)
Query: 185 PTSVFSIDVNQKEADCRSWFPSIH----RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLL 240
P VF+I CR ++ L+LDG+QDPGN+GT++RTA A + GV +
Sbjct: 72 PQGVFAI--------CRQLNQNVELEGTAYLLLDGVQDPGNIGTMIRTADAAGFDGVIMG 123
Query: 241 PGCCDPFSEKALRASRGACFQLPIVS 266
G DP++ K LR+++G+ F LPIV+
Sbjct: 124 EGTVDPYNPKVLRSAQGSHFHLPIVN 149
>gi|407961688|dbj|BAM54928.1| rRNA methylase [Bacillus subtilis BEST7613]
Length = 271
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 83/186 (44%), Gaps = 31/186 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT----TPIREIYNFNRSLQERTVRM 134
+ +ITST NP VK +L Q+ R G L+ GT + + FN
Sbjct: 5 IASITSTQNPLVKQLRQLHQTKG-RKQQGQLLLEGTHLLEVALAQGKGFNHG-------- 55
Query: 135 DCLLLLDKVEVPEGLDNI---STHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI 191
C + + + P D + S H+ VS V+ K++ + + + A M
Sbjct: 56 -CFTAMWQEKNPVLADRLMAQSVHSYLVSGEVLAKMASTVNPDGVVATLTM--------- 105
Query: 192 DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
+ RS P LVL+ +QDPGNLGT+LRTA A G++L C DP S K
Sbjct: 106 -----DQFWRSPPPHARLGLVLERLQDPGNLGTILRTAAATGVEGIWLTADCVDPTSPKV 160
Query: 252 LRASRG 257
LR+S G
Sbjct: 161 LRSSAG 166
>gi|317121670|ref|YP_004101673.1| tRNA/rRNA methyltransferase SpoU [Thermaerobacter marianensis DSM
12885]
gi|315591650|gb|ADU50946.1| tRNA/rRNA methyltransferase (SpoU) [Thermaerobacter marianensis DSM
12885]
Length = 273
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 85/190 (44%), Gaps = 19/190 (10%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
ITS NP +K KL Q +R G+ LV G + E R +++
Sbjct: 2 RITSPQNPRIKRLRKL-QERRHRRQLGATLVEGRRFVEEALAAGRPVRQAIYTAAFAAAP 60
Query: 141 DKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS-IDVNQKEAD 199
+ L T V+ ++ EA+A+ + P + + + V++
Sbjct: 61 AGAALLRALAAAGTELAEVTDRLL------------EAVAMTETPQGIVAEVAVDEPAPV 108
Query: 200 CRSWFPSIHR-----ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+W+ + L+ DG+QDPGNLGTL+R A G L+PG DPF +A+RA
Sbjct: 109 GPAWWRQVAEGRLPLALLPDGVQDPGNLGTLVRAAAGLGAAGAVLVPGTVDPFHPRAVRA 168
Query: 255 SRGACFQLPI 264
S GAC +LP+
Sbjct: 169 SAGACLRLPM 178
>gi|295103248|emb|CBL00792.1| rRNA methylases [Faecalibacterium prausnitzii SL3/3]
Length = 260
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 103/236 (43%), Gaps = 36/236 (15%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
+ ITS N +K+ +L +++R + G L G E+ R ++ L
Sbjct: 3 EKITSRENAKIKYACRLASGAAFRRTEGRFLAEGRKLCPEL--------ARGAELETLFY 54
Query: 140 LDKV--EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + PE L + V V KL+ V + + + VF V+ E
Sbjct: 55 TENALEKCPE-LAALPGEHYLVEDHVADKLADVGTHQGV---------FGVFRTPVHTLE 104
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
+ R R L L+ +QDPGN+GTLLR+A AF + GV L GC ++ K LRAS G
Sbjct: 105 -EVRPG----GRYLALERVQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMG 159
Query: 258 ACFQLPIV-SGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVP 312
A ++P++ +G+ L E + LA L SQ L+ + AG P
Sbjct: 160 AAVRIPVIETGAMPQAIALLREKGITCLA----------AALYQSQPLSAAKAGYP 205
>gi|160945996|ref|ZP_02093222.1| hypothetical protein FAEPRAM212_03529 [Faecalibacterium prausnitzii
M21/2]
gi|158443727|gb|EDP20732.1| RNA methyltransferase, TrmH family [Faecalibacterium prausnitzii
M21/2]
Length = 260
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 103/236 (43%), Gaps = 36/236 (15%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
+ ITS N +K+ +L +++R + G L G E+ R ++ L
Sbjct: 3 EKITSRENAKIKYACRLASGAAFRRTEGRFLAEGRKLCPEL--------ARGAELETLFY 54
Query: 140 LDKV--EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + PE L + V V KL+ V + + + VF V+ E
Sbjct: 55 TENALEKCPE-LAALPGEHYLVEDHVADKLADVGTHQGV---------FGVFRTPVHTLE 104
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
+ R R L L+ +QDPGN+GTLLR+A AF + GV L GC ++ K LRAS G
Sbjct: 105 -EVRPG----GRYLALERVQDPGNVGTLLRSAAAFGFDGVILSEGCASVYAPKTLRASMG 159
Query: 258 ACFQLPIV-SGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVP 312
A ++P++ +G+ L E + LA L SQ L+ + AG P
Sbjct: 160 AAVRIPVIETGAMPQAITLLREKGITCLAA----------ALYQSQPLSAAKAGYP 205
>gi|403070314|ref|ZP_10911646.1| rRNA methylase [Oceanobacillus sp. Ndiop]
Length = 245
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 96/200 (48%), Gaps = 33/200 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N +K KL + R + G+ +V G + E + ++ E + D
Sbjct: 2 ITSVKNEKIKALKKLHKRKE-RTNSGTFIVEGFHLLEEASKSDWTIVEIIAQED------ 54
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+++P+ + + RVS VM +S S + + AI +K P + D
Sbjct: 55 -IKLPDWTE--AYRVERVSGNVMAYISQTPSPQGVLAIMEIKEP--------KDRNGD-- 101
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
L++D IQDPGNLGT++RTA A G+ + G D +++K +R+++G+ F
Sbjct: 102 -------HFLIIDSIQDPGNLGTIIRTADAAGMDGIIIGEGTVDLYNDKVIRSTQGSLFH 154
Query: 262 LPIVSGSWYHLEVLKDEFQM 281
+PI YH E LK+E ++
Sbjct: 155 IPI-----YHAE-LKEEVEV 168
>gi|302391187|ref|YP_003827007.1| tRNA/rRNA methyltransferase SpoU [Acetohalobium arabaticum DSM
5501]
gi|302203264|gb|ADL11942.1| tRNA/rRNA methyltransferase (SpoU) [Acetohalobium arabaticum DSM
5501]
Length = 268
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 14/112 (12%)
Query: 154 THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRI-LV 212
T + ++ ++ K++ + + I AI VNQ E + + + + L+
Sbjct: 75 TEIIEITDSLLNKIADTATPQGIIAI-------------VNQPEFELEDFLIEDNDLFLI 121
Query: 213 LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
+D IQDPGNLGT+LRTA GVFLL G D ++ K +RA+ G+ F++P+
Sbjct: 122 IDRIQDPGNLGTILRTADGAGVDGVFLLKGTVDIYNLKTIRATMGSLFRVPV 173
>gi|194289777|ref|YP_002005684.1| tRNA/rRNA methyltransferase [Cupriavidus taiwanensis LMG 19424]
gi|193223612|emb|CAQ69619.1| putative TRNA/RRNA METHYLTRANSFERASE PROTEIN [Cupriavidus
taiwanensis LMG 19424]
Length = 260
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 95/211 (45%), Gaps = 27/211 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+ITS N KH L S+ R G +L+ G ++ + R + CL+
Sbjct: 1 MKHITSRDNALFKHLKALAGSTHQRRKAGQSLLDG------VHLAQAYVAARGQPVTCLV 54
Query: 139 L---LDKVEVPEGLDNISTHTVRV-SSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
D EV L + + V V + + ++SGV + I+ + +++ P +
Sbjct: 55 SERHYDHAEVAPLLAEVDSERVVVLADALFTQISGVVNG--IDLMLVIETPAGHLPARIE 112
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
Q DC ++LDG+QD GN+G++LR+A A FL GC +S K LRA
Sbjct: 113 Q---DC----------IILDGVQDAGNVGSILRSAAAAGIRDAFLATGCAFAWSVKTLRA 159
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
GA F L IV LE L + LLA
Sbjct: 160 GMGANFHLNIV--EHCTLEALAPRLAIPLLA 188
>gi|334135267|ref|ZP_08508759.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF7]
gi|333607089|gb|EGL18411.1| RNA methyltransferase, TrmH family [Paenibacillus sp. HGF7]
Length = 273
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 88/203 (43%), Gaps = 21/203 (10%)
Query: 73 FALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTV 132
A Y+ +ITS N VK L R G+ L+ G + E ++
Sbjct: 1 MAQAYNQPDITSVQNNRVKEWAGLLDRKG-RQKAGAFLIEGIHLVEEAVRAGAPVRTLVY 59
Query: 133 RMDCLL---LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVF 189
D L L D E TV V+ +M++ + ++ + I A+
Sbjct: 60 EADKGLPGTLADHAEAA------GIETVSVTRPIMERCTDTETPQGIFAV---------- 103
Query: 190 SIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
+D + A+ P ++V+DG+QDPGNLGT++R+A A V L G D ++
Sbjct: 104 -VDKPAEPAETLLADPGSDLVVVVDGVQDPGNLGTIIRSADAVGASAVVLGRGTVDLYNP 162
Query: 250 KALRASRGACFQLPIVSGSWYHL 272
KA+R++ G+ F LPIV L
Sbjct: 163 KAIRSTMGSLFHLPIVEADLQEL 185
>gi|373857563|ref|ZP_09600304.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus sp. 1NLA3E]
gi|372452695|gb|EHP26165.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus sp. 1NLA3E]
Length = 253
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 95/189 (50%), Gaps = 23/189 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+I S NP +K KL + R G+ L+ G + E +L++ V ++ L+
Sbjct: 1 MKHIHSVKNPQIKEWKKLL-TKKERDKTGTFLIEGFHLVEE------ALKKEDVVLE-LI 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ ++VE+P + S V+ V+K LS ++ + + AI + +K
Sbjct: 53 VDEQVELPAKWNYGSIPLTLVTVEVIKSLSDTETPQGVIAICRQE----------QEKNT 102
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D L++D +QDPGN+GT++RTA A V + G D ++ K LR+++G+
Sbjct: 103 DIIK-----KTYLLIDSVQDPGNMGTMIRTADAAGIDAVIVGNGSVDIYNPKVLRSAQGS 157
Query: 259 CFQLPIVSG 267
F LPIV+G
Sbjct: 158 HFHLPIVTG 166
>gi|338814189|ref|ZP_08626223.1| RNA methyltransferase, TrmH family, group 3 [Acetonema longum DSM
6540]
gi|337273794|gb|EGO62397.1| RNA methyltransferase, TrmH family, group 3 [Acetonema longum DSM
6540]
Length = 268
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 84/191 (43%), Gaps = 24/191 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS NP +K L Q YR G + G E+ ++ C+L
Sbjct: 5 ITSPHNPLIKMVSCLTQKK-YRQQTGLFVAEGIRLAEELAAAGWPVEA------CILSAS 57
Query: 142 KVEVPEGLDNIS-----THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
+ P D + T V+VS + +K++ + + I +A + +
Sbjct: 58 AEQNPRAQDLVRSVSSRTRVVKVSDDIFQKMADTEQPQGILLVARSR----------QYQ 107
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
D + + +LVLD +QDPGN+G L+RT A GV L GC D +S K +RAS
Sbjct: 108 LTDLITRTKAF--LLVLDNVQDPGNIGALIRTGDAAGCSGVILTVGCADIYSTKVVRASM 165
Query: 257 GACFQLPIVSG 267
G+ F LP++ G
Sbjct: 166 GSIFHLPVLQG 176
>gi|187928382|ref|YP_001898869.1| tRNA/rRNA methyltransferase SpoU [Ralstonia pickettii 12J]
gi|187725272|gb|ACD26437.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia pickettii 12J]
Length = 260
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 88/190 (46%), Gaps = 23/190 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+ITS N KH L S+ +R G +++ G ++ L + + CL+
Sbjct: 1 MKHITSRDNAVFKHLKALSGSTQHRRRAGQSVLDG------VHLVVAYLDAGHMPVQCLV 54
Query: 139 LLDKVEVPEG---LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
V PE LD + TV ++ L G Q + + + LM + +
Sbjct: 55 SERHVRHPEVAAVLDRVDPDTV---ILLADNLFG-QLTTVVNGVDLMALVETAEGKLPQT 110
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
+ADC ++LDGIQD GN+G++LR A A VF+ PGC +S K LRA+
Sbjct: 111 IDADC----------VILDGIQDAGNVGSILRCAAAAGVRDVFMTPGCAFAWSAKTLRAA 160
Query: 256 RGACFQLPIV 265
GA F L IV
Sbjct: 161 MGAHFHLNIV 170
>gi|420241270|ref|ZP_14745418.1| rRNA methylase [Rhizobium sp. CF080]
gi|398072011|gb|EJL63247.1| rRNA methylase [Rhizobium sp. CF080]
Length = 286
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 15/221 (6%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS SNP +K +K + R G+ + G + + +++ L
Sbjct: 15 QVKEVTSLSNPIIKD-IKALTNKKDREESGTFMAEGLKLVIDALELGWTIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ ++ TV +V++ S + + ++ P V I Q+
Sbjct: 67 VYAKAAKGKTLVEQVAAKTVAHGGLVLE-----VSEKVLSSVTRRDNPQMVVGI-FEQRW 120
Query: 198 ADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
P LV LD ++DPGNLGT++RTA A GV L+ C DPFS + +RA+
Sbjct: 121 KRLDDLRPGRDETLVALDRVRDPGNLGTIIRTADAAGASGVILVGECTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
G+ F +P+V S + +++A H G + R V
Sbjct: 181 GSVFAMPVVKCSAEEFLTWQKRSGTQVVATHLAGAVDYRTV 221
>gi|347527858|ref|YP_004834605.1| RNA methyltransferase [Sphingobium sp. SYK-6]
gi|345136539|dbj|BAK66148.1| RNA methyltransferase [Sphingobium sp. SYK-6]
Length = 278
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 90/214 (42%), Gaps = 34/214 (15%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMD---- 135
+ IT SNP VK LR+ R G L G + E L E
Sbjct: 3 REITGFSNPLVKRVRSLREKK-LRKREGLFLAEGLRILTEARELG-VLPEMIFLASGADP 60
Query: 136 ---CLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID 192
L+D VE G + + ++ K+SG +++++ + ++ T + ++D
Sbjct: 61 HPLASALIDAVEAAGG------DVIFTTPDILGKMSGKDNAQTLIGVYRDRL-TPLPALD 113
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
A WF V ++DPGNLGTL+R A GGV L+ C DPFS +A+
Sbjct: 114 ----RARAPIWF-------VAQAMRDPGNLGTLMRIGDAVGAGGVILVDDCVDPFSVEAV 162
Query: 253 RASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAG 286
RAS GA F I W DEF L AG
Sbjct: 163 RASMGAIFTQTIAHAGW-------DEFLAWLRAG 189
>gi|253575250|ref|ZP_04852588.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845247|gb|EES73257.1| tRNA/rRNA methyltransferase [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 263
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 25/190 (13%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
I S NP VK L + + R G L+ G ++E +LQ R ++C+
Sbjct: 2 EILSAQNPRVKEWAGLLEKKN-RDKQGKYLIEGIHLVQE------ALQSRA-DVECVCYD 53
Query: 141 DKVEVPEGLD-----NISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
+ +P L + + VS+ V+ K S +S P VF++
Sbjct: 54 LEHGIPVELQAAASAGLDVDWIGVSAAVIAKCSDTKS------------PQPVFAVVRKD 101
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
+ ++VLDG+QDPGN+GT++R+A A GV + GC D + K LRA+
Sbjct: 102 RGTVAPLLAKERSLVVVLDGVQDPGNVGTIIRSADAVAADGVIVGAGCADIYGPKVLRAT 161
Query: 256 RGACFQLPIV 265
G+ F LP+V
Sbjct: 162 MGSLFHLPVV 171
>gi|144575178|gb|AAZ43977.2| putative tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
Length = 239
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 39/197 (19%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S NP +K KL Q+ YR L+ G I E + + + +
Sbjct: 3 IKSKQNPLIKEYKKL-QNKKYRKEKQQFLLEGFNLISEAKKYTNVITLESSK-------- 53
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
D I ++RV ++K LS +S +SI +A PT+
Sbjct: 54 --------DLIYKDSIRVDYEIIKHLSETKSPQSIIGVASFLKPTN-------------- 91
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF- 260
I++ ++L+ + DPGN+GT+LR+A+AF++ V + D ++ K +R+S GA F
Sbjct: 92 ----KINKTVILNNVSDPGNIGTILRSALAFEFDTVII--ENIDIYNPKIIRSSLGAIFS 145
Query: 261 QLPIVSGSWYHLEVLKD 277
L I+S S E+LKD
Sbjct: 146 NLNIISTSNLE-EILKD 161
>gi|383753784|ref|YP_005432687.1| putative RNA methyltransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381365836|dbj|BAL82664.1| putative RNA methyltransferase [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 267
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG-SW 269
+V+DG+QDPGN GT++RTA A GV +L G D F++K +R++ G+ F +P+ +G S
Sbjct: 121 VVMDGVQDPGNAGTIIRTADAVGADGVIMLKGSVDAFADKVVRSTMGSIFHVPVYAGISA 180
Query: 270 YHLEVLKDEFQMKLLAGHAGGNEEP 294
L+ ++LLA N +P
Sbjct: 181 AELQAFVQAQDLQLLATALDENAKP 205
>gi|172058194|ref|YP_001814654.1| tRNA/rRNA methyltransferase SpoU [Exiguobacterium sibiricum 255-15]
gi|171990715|gb|ACB61637.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sibiricum
255-15]
Length = 251
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+I+S N VK KL + R L+ G + E ++E VR D
Sbjct: 1 MKHISSPKNEIVKQWKKLL-TKKGRLQTKRFLIEGEHLVEEAVRAG-IIKELIVRED--- 55
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
V+VP + + + V K LS ++++ I A+ MK Q E
Sbjct: 56 ----VQVPGSWKKNAADLITIDESVAKVLSETETTQGIFAVCEMK----------QQTER 101
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
R R L+LD +QDPGN+GT++RTA A + GV + G D ++ K LRA++G+
Sbjct: 102 LERG------RYLLLDRLQDPGNVGTMIRTADAAGFDGVIIGHGTVDVYNSKVLRATQGS 155
Query: 259 CFQLPIV 265
F LP++
Sbjct: 156 IFHLPVI 162
>gi|387824693|ref|YP_005824164.1| rRNA methyltransferase [Francisella cf. novicida 3523]
gi|332184159|gb|AEE26413.1| rRNA methyltransferase [Francisella cf. novicida 3523]
Length = 250
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSW 269
ILVLD IQDPGN+GT+LRTA+A + L+ G DPF+ KA+RA GA F L +
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEIILINGTVDPFNPKAIRAGMGAQFSL-----KF 159
Query: 270 YHLEVLKD 277
+LE L D
Sbjct: 160 SYLETLAD 167
>gi|261331720|emb|CBH14714.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 586
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 24/184 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+ + ++H +KLRQ+ YR S +V G + E++ +R LL+ +
Sbjct: 127 ISDERHHLIQHFVKLRQNPKYRSSKQMMVVGGRHLLHELH-------KRGYTPRHLLVRE 179
Query: 142 KVEVPEGLDN--ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTS--VFSIDVNQKE 197
+ P+ N + T +RV + ++ V S + I IP S+ N++
Sbjct: 180 GQQKPKWATNTGVKTEIIRVD----RHVADVCSPGNDGFIGDFDIPKPPPKESLIANKQR 235
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
D R+LVLD + DPG LGT+LRTA F + V C D + + +RA+RG
Sbjct: 236 FD---------RVLVLDNVDDPGLLGTVLRTAAGFHYDAVIATNHCADLYDHRVIRAARG 286
Query: 258 ACFQ 261
A FQ
Sbjct: 287 AHFQ 290
>gi|15674507|ref|NP_268681.1| 23S rRNA methyltransferase [Streptococcus pyogenes SF370]
gi|71910113|ref|YP_281663.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
gi|94987928|ref|YP_596029.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
gi|94991812|ref|YP_599911.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
gi|410679985|ref|YP_006932387.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pyogenes A20]
gi|417857476|ref|ZP_12502535.1| 23S rRNA methyltransferase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|13621609|gb|AAK33402.1| putative rRNA methylase [Streptococcus pyogenes M1 GAS]
gi|71852895|gb|AAZ50918.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS5005]
gi|94541436|gb|ABF31485.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS9429]
gi|94545320|gb|ABF35367.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS2096]
gi|387934431|gb|EIK42544.1| 23S rRNA methyltransferase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|395453359|dbj|BAM29698.1| 23S rRNA methyltransferase [Streptococcus pyogenes M1 476]
gi|409692574|gb|AFV37434.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pyogenes A20]
Length = 245
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 15/129 (11%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGI 216
V VS V+K+L+ S + I +A ++IP F D K LVL+ +
Sbjct: 65 VIVSPQVLKELTDSPSPQGI--VAEVEIPKLAFPSDYKGK-------------YLVLEDV 109
Query: 217 QDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLK 276
QDPGNLGT++RTA A ++ GVFL D +++K LR+ +G+ F LPI Y L
Sbjct: 110 QDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCREL 169
Query: 277 DEFQMKLLA 285
E++ +LA
Sbjct: 170 QEYETPILA 178
>gi|329850767|ref|ZP_08265612.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
gi|328841082|gb|EGF90653.1| spoU rRNA Methylase family protein [Asticcacaulis biprosthecum C19]
Length = 263
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 43/202 (21%)
Query: 79 VKNITSTSNPFVK-----HCLKLRQSSSYRHSHGSALVV-----GTTPIREIYNFNRS-- 126
+K++TS +N VK H K R+ + + G +++ G P+ I F +S
Sbjct: 2 IKSVTSLTNQTVKDIRALHMRKEREETGRFLAEGLKIIIDALDQGFAPL--ILVFGKSDD 59
Query: 127 ---LQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMK 183
+ ER +R E L + + V+ +++K+S + + + A+ +
Sbjct: 60 RHPMLERAIR-------------ETL-AVEGEVLEVTREILEKISRKDNPQMVVAVFAQQ 105
Query: 184 IPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGC 243
+ S+ ID N W + L+ I+DPGNLGT++RTA A GGV L+ C
Sbjct: 106 VK-SLADIDPNSNAV----W-------VALEQIRDPGNLGTIIRTADAAGIGGVILIGDC 153
Query: 244 CDPFSEKALRASRGACFQLPIV 265
DPFS + +RA+ G+ F LP+V
Sbjct: 154 VDPFSVETVRATMGSVFALPVV 175
>gi|163845980|ref|YP_001634024.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
gi|222523706|ref|YP_002568176.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
gi|163667269|gb|ABY33635.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
J-10-fl]
gi|222447585|gb|ACM51851.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
Length = 260
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWY 270
LVLD IQDPGN+GTLLR+A A G V PG DPF+ K RA+ GA F +P+ W
Sbjct: 115 LVLDAIQDPGNVGTLLRSAAAAGVGLVMCAPGTVDPFNPKVARAAMGAHFLVPLRVSPW- 173
Query: 271 HLEVLKDEFQ 280
E ++ E Q
Sbjct: 174 --ETIRAELQ 181
>gi|402823203|ref|ZP_10872640.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas sp. LH128]
gi|402263266|gb|EJU13192.1| tRNA/rRNA methyltransferase SpoU [Sphingomonas sp. LH128]
Length = 277
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 90/210 (42%), Gaps = 26/210 (12%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT---TPIREIYNFNRSLQERTVRMDC 136
+ IT SNP VK LR +R L G T RE L R D
Sbjct: 13 RTITGFSNPLVKFLRSLRDKK-HRKREKRFLAEGLRLLTDARECGVLPEMLVMAIGR-DP 70
Query: 137 LLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
LLD +E + V + ++ K++G + +++ + + T + ++D
Sbjct: 71 HPLLDALET--AVAAAGGEIVEMDVEILAKVTGKDNPQAVAGV-FAEFDTRLANLD---- 123
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
A W LV ++DPGNLGT+LRT A GG+ L+ C DPFS +A+RAS
Sbjct: 124 RASSPIW-------LVAQALRDPGNLGTMLRTGDAVGAGGLILIDDCADPFSVEAVRASM 176
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAG 286
GA F I W +EFQ L G
Sbjct: 177 GAIFTQKIAIAPW-------EEFQDWLRGG 199
>gi|71405533|ref|XP_805376.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70868764|gb|EAN83525.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 559
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 26/191 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I + ++H ++LRQ+ YR S ++ G +RE++ + + LL+
Sbjct: 109 IDDERHDLIQHFVRLRQNPKYRSSKQMMILGGREVLRELFEEGHTPRH-------LLIRG 161
Query: 142 KVEVPE--GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPT--SVFSIDVNQKE 197
EVP + T VRV + ++ V + + I IP + ++ N++
Sbjct: 162 SQEVPSWAKKKGLETEIVRVD----RHVAEVCAPGNDGYIGDFDIPPPPAKENLIANKQR 217
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
D RILVLD + DPG LGTLLRTA F + + C D + + +R++RG
Sbjct: 218 FD---------RILVLDNVDDPGLLGTLLRTAAGFHYDAIITTNHCADIYDHRVVRSARG 268
Query: 258 ACFQ--LPIVS 266
A FQ +PI +
Sbjct: 269 AHFQKAVPIYT 279
>gi|71745782|ref|XP_827521.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831686|gb|EAN77191.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 586
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 24/184 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+ + ++H +KLRQ+ YR S +V G + E++ +R LL+ +
Sbjct: 127 ISDERHHLIQHFVKLRQNPKYRSSKQMMVVGGRHLLHELH-------KRGYTPRHLLVRE 179
Query: 142 KVEVPEGLDN--ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTS--VFSIDVNQKE 197
+ P+ N + T +RV + ++ V S + I IP S+ N++
Sbjct: 180 GQQKPKWATNTGVKTEIIRVD----RHVADVCSPGNDGFIGDFDIPKPPPKESLIANKQR 235
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
D R+LVLD + DPG LGT+LRTA F + V C D + + +RA+RG
Sbjct: 236 FD---------RVLVLDNVDDPGLLGTVLRTAAGFHYDAVIATNHCADLYDHRVIRAARG 286
Query: 258 ACFQ 261
A FQ
Sbjct: 287 AHFQ 290
>gi|407847381|gb|EKG03106.1| hypothetical protein TCSYLVIO_005857 [Trypanosoma cruzi]
Length = 559
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 89/191 (46%), Gaps = 26/191 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I + ++H ++LRQ+ YR S ++ G +RE++ + + LL+
Sbjct: 109 IDDERHELIQHFVRLRQNPKYRSSKQMMILGGREVLRELFEEGHTPRH-------LLIRG 161
Query: 142 KVEVPE--GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPT--SVFSIDVNQKE 197
EVP + T VRV + ++ V + + I IP + ++ N++
Sbjct: 162 SQEVPSWAKKKGVETEIVRVD----RHVAEVCAPGNDGYIGDFDIPPPPAKENLIANKQR 217
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
D R+LVLD + DPG LGTLLRTA F + + C D + + +R++RG
Sbjct: 218 FD---------RVLVLDNVDDPGLLGTLLRTAAGFHYDAIITTNHCADIYDHRVVRSARG 268
Query: 258 ACFQ--LPIVS 266
A FQ +PI +
Sbjct: 269 AHFQKAVPIYT 279
>gi|21909794|ref|NP_664062.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS315]
gi|28896513|ref|NP_802863.1| 23S rRNA methyltransferase [Streptococcus pyogenes SSI-1]
gi|306827961|ref|ZP_07461228.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC
10782]
gi|21903979|gb|AAM78865.1| putative spoU rRNA Methylase family protein [Streptococcus pyogenes
MGAS315]
gi|28811767|dbj|BAC64696.1| putative rRNA methylase [Streptococcus pyogenes SSI-1]
gi|304429880|gb|EFM32922.1| TrmH family RNA methyltransferase [Streptococcus pyogenes ATCC
10782]
Length = 245
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 15/129 (11%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGI 216
V VS V+K+L+ S + I +A ++IP F D K LVL+ +
Sbjct: 65 VIVSPQVLKELTDSPSPQGI--VAEVEIPKLAFPSDYKGK-------------YLVLEDV 109
Query: 217 QDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLK 276
QDPGNLGT++RTA A ++ GVFL D +++K LR+ +G+ F LPI Y L
Sbjct: 110 QDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCREL 169
Query: 277 DEFQMKLLA 285
E++ +LA
Sbjct: 170 QEYKTPILA 178
>gi|221632836|ref|YP_002522058.1| putative 23S rRNA methyltransferase tsnR [Thermomicrobium roseum
DSM 5159]
gi|221156608|gb|ACM05735.1| possible 23S rRNA methyltransferase tsnR [Thermomicrobium roseum
DSM 5159]
Length = 271
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 63/115 (54%), Gaps = 13/115 (11%)
Query: 152 ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRIL 211
+ T + V+ V+ +++ + +++ +A+ IP+ F + + F L
Sbjct: 73 VGTRIIAVTERVLHEIAETMTPQAV--VAVFPIPSIPFRLPTAEP------LF-----AL 119
Query: 212 VLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
++D +QDPGNLGTLLR+A+ V L PG DPF+ K +RA+ GA F LPI +
Sbjct: 120 IVDRLQDPGNLGTLLRSALGAGVHAVLLTPGTVDPFNPKVVRAAAGAHFHLPIAT 174
>gi|372325406|ref|ZP_09519995.1| rRNA methylase [Oenococcus kitaharae DSM 17330]
gi|366984214|gb|EHN59613.1| rRNA methylase [Oenococcus kitaharae DSM 17330]
Length = 255
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 92/199 (46%), Gaps = 36/199 (18%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQE---RTVRMDCLL 138
ITS N VK L Q++ R GS L+ G ++E N +Q +MD L
Sbjct: 4 ITSNQNSRVKLWTSL-QTAKGRQQSGSYLLDGWHLVQEALNQAAPIQAVIATEAQMDEHL 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+VP+G+ +V+ V + ++ + + I A +P + F + K
Sbjct: 63 ----ADVPQGVP-----AFQVTDEVARHIAKTNNPQGI--FAQTSLPNNSF----DSKYV 107
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
W L+LD IQDPGN+GTL+RTA A + GV L G DPF K +RA +G+
Sbjct: 108 HAGQW-------LLLDRIQDPGNVGTLVRTADAAGFTGVALSVGSADPFGPKVVRAMQGS 160
Query: 259 CFQLPIVSGSWYHLEVLKD 277
F HL+V+KD
Sbjct: 161 QF----------HLKVIKD 169
>gi|134299475|ref|YP_001112971.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum reducens MI-1]
gi|134052175|gb|ABO50146.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum reducens MI-1]
Length = 267
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 74/143 (51%), Gaps = 18/143 (12%)
Query: 153 STHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS--IDVNQKEADCRSWFPSIHRI 210
+ VS +MK+LS ++ + + +A+++ P I +QK +
Sbjct: 72 GVEVLAVSDAIMKELSDTETPQGM--LAVLRQPDYTLEDIIRPDQKPL-----------V 118
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWY 270
+++DG+QDPGNLGT++R+A A GV LL G D ++ K LRA+ G+ F LP++ S
Sbjct: 119 VIVDGVQDPGNLGTIIRSADAAGASGVILLKGTVDIYNPKTLRATMGSLFHLPVIQVSDV 178
Query: 271 H--LEVLKDEFQMKLLAGHAGGN 291
+ LE L + LL G G
Sbjct: 179 NEALEYLAS-IGVTLLVGEPAGG 200
>gi|50913671|ref|YP_059643.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
gi|50902745|gb|AAT86460.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10394]
Length = 245
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 15/129 (11%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGI 216
V VS V+K+L+ S + I +A ++IP F D K LVL+ +
Sbjct: 65 VIVSPQVLKELTDSPSPQGI--VAEVEIPKLAFPSDYKGK-------------YLVLEDV 109
Query: 217 QDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLK 276
QDPGNLGT++RTA A ++ GVFL D +++K LR+ +G+ F LPI Y L
Sbjct: 110 QDPGNLGTIIRTADAARFNGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCREL 169
Query: 277 DEFQMKLLA 285
E++ +LA
Sbjct: 170 QEYKTPILA 178
>gi|402298427|ref|ZP_10818122.1| RNA methyltransferase [Bacillus alcalophilus ATCC 27647]
gi|401726400|gb|EJS99632.1| RNA methyltransferase [Bacillus alcalophilus ATCC 27647]
Length = 254
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VK+ KL + R G L+ G I E +L+ + ++ + +L
Sbjct: 1 MKRIESVKNEQVKNWKKLL-TKKGRDKSGQFLLEGFHLIEE------ALKAK-LKFEAIL 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ ++ ++ + V+ V+K+LS + + + + +A++++PT I A
Sbjct: 53 VTNEDKIESQWQIERKKFIIVTEQVLKELSEMDTPQGV--VAIVQMPTWPEQI------A 104
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
W L++D +QDPGN+GT++RTA A G+ L G D ++ K +RA++GA
Sbjct: 105 TTGQW-------LLIDRVQDPGNIGTMIRTAEAAGLTGIVLGEGSVDLYNGKVVRATQGA 157
Query: 259 CFQLPIVSGSWYHL 272
F +PI+ G+ L
Sbjct: 158 LFHIPIIKGNILEL 171
>gi|331091980|ref|ZP_08340812.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402879|gb|EGG82446.1| hypothetical protein HMPREF9477_01455 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 257
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 98/216 (45%), Gaps = 32/216 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITST N VK L+L++ S R+ LV G I+ + R+ E+ + L
Sbjct: 2 ITSTGNAQVKELLQLQKKSKVRNERNIFLVEG---IKMFFEAPRNRIEKVFISETLFDRK 58
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
K E+ LD + + S + ++ K P + I + QK+
Sbjct: 59 KQEL--NLDGLKVEIL--------------SDKVFSHVSDTKTPQGILCI-MRQKKTKLE 101
Query: 202 SWFPSI-HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
F +++LD +QDPGNLGT++RTA G+ L C D ++ K +R++ G+ +
Sbjct: 102 EIFAQKPEHLMILDNLQDPGNLGTIVRTAEGAGVSGIILSKDCVDIYNPKTIRSTMGSIY 161
Query: 261 QLPIVSGSWYHLEVLKDEFQ------MKLLAGHAGG 290
++P + ++E L++ + +K+ A H G
Sbjct: 162 RMP-----FLYVEDLENTIEEVKKQDIKVYAAHLQG 192
>gi|71902954|ref|YP_279757.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
gi|421893476|ref|ZP_16323978.1| FIG011178: rRNA methylase [Streptococcus pyogenes NS88.2]
gi|71802049|gb|AAX71402.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS6180]
gi|379980751|emb|CCG27700.1| FIG011178: rRNA methylase [Streptococcus pyogenes NS88.2]
Length = 245
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 15/129 (11%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGI 216
V VS V+K+L+ S + I +A ++IP F D K LVL+ +
Sbjct: 65 VIVSPQVLKELTDSPSPQGI--VAEVEIPKLAFPSDYKGK-------------YLVLEDV 109
Query: 217 QDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLK 276
QDPGNLGT++RTA A ++ GVFL D +++K LR+ +G+ F LPI Y L
Sbjct: 110 QDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCREL 169
Query: 277 DEFQMKLLA 285
E++ +LA
Sbjct: 170 QEYKTPILA 178
>gi|359403651|ref|ZP_09196555.1| rRNA methylase [Spiroplasma melliferum KC3]
gi|438119647|ref|ZP_20871767.1| rRNA methylase [Spiroplasma melliferum IPMB4A]
gi|358832882|gb|EHK51986.1| rRNA methylase [Spiroplasma melliferum KC3]
gi|434155395|gb|ELL44348.1| rRNA methylase [Spiroplasma melliferum IPMB4A]
Length = 260
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 13/106 (12%)
Query: 159 VSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQD 218
VS ++ KLS ++S++I + ID+ + + F IL+L+ IQD
Sbjct: 73 VSESILTKLSQSKNSQNIIGV-----------IDLTKVKEQNNFQFN--QNILLLENIQD 119
Query: 219 PGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
PGN+GTL+RT + F + + L D F++K LRAS+GA F++ I
Sbjct: 120 PGNVGTLIRTGLGFGFTNIILYNHTVDLFNDKVLRASQGAIFKVAI 165
>gi|335033073|ref|ZP_08526445.1| rRNA methylase [Agrobacterium sp. ATCC 31749]
gi|333795749|gb|EGL67074.1| rRNA methylase [Agrobacterium sp. ATCC 31749]
Length = 286
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 102/239 (42%), Gaps = 24/239 (10%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L Q R G+ + G + + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTQKKG-REETGTFMAEGLKLVIDALELGWTIK-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ + TV +V++ S + I +I P V I QK
Sbjct: 67 VYAKAAKGKPLVEQAAVKTVASGGLVLE-----VSEKVIASITRRDNPQMVVGI-FEQKW 120
Query: 198 ADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ P + LD ++DPGNLG+++RTA A GV L+ C DPFS + +RA+
Sbjct: 121 KPLKDIRPEKGETYIALDRVRDPGNLGSIIRTADAAGASGVILVGDCTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLCL 315
G+ F P+ S K + ++A H G+ + R++ +AG P+ +
Sbjct: 181 GSVFATPVARTSVEEFLSWKKSAHVSVVATHLAGSVDYRKI---------DYAGKPVVI 230
>gi|121602580|ref|YP_989621.1| RNA methyltransferase [Bartonella bacilliformis KC583]
gi|421761420|ref|ZP_16198222.1| tRNA/rRNA methyltransferase SpoU [Bartonella bacilliformis INS]
gi|120614757|gb|ABM45358.1| RNA methyltransferase, TrmH family [Bartonella bacilliformis KC583]
gi|411172885|gb|EKS42935.1| tRNA/rRNA methyltransferase SpoU [Bartonella bacilliformis INS]
Length = 274
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 29/195 (14%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK ITS SNP +K LK R+ G + G + + N ++Q L
Sbjct: 4 QVKEITSLSNPIIKD-LKALNKKKKRNQEGLFMAEGLKLVIDALNLGWTIQ-------TL 55
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++N + H + V++ S + +E+I P +V I Q
Sbjct: 56 IFSKSTQGNTTIENTAAHILANGGYVIRA-----SQKIMESITHRDNPQTVVGIFKQQ-- 108
Query: 198 ADCRSWFPSIHRI--------LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
W P I I + LD ++DPGNLGT++RTA A GV L+ DPFS
Sbjct: 109 -----WHP-IETITESAKDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSP 162
Query: 250 KALRASRGACFQLPI 264
+ +R++ G+ F +P+
Sbjct: 163 ETVRSTMGSIFSIPL 177
>gi|345023422|ref|ZP_08787035.1| rRNA methylase [Ornithinibacillus scapharcae TW25]
Length = 245
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 27/184 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS N VK KL R + L+ G I E N ++E +++ +
Sbjct: 2 LTSVKNDKVKGWKKLHNRRD-RMKSNTFLIEGFHLIEEAIASNWQIEE-------IIIKE 53
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
V VPE + S V VS V + +S ++ + I A+ K N D
Sbjct: 54 NVTVPEWV--TSLPVVEVSENVFQHISQTKTPQGIAAVVHFK--------QFNDITGDY- 102
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+L+LD IQDPGNLGT++RTA A + V L G D +++K +R+++G+ F
Sbjct: 103 --------VLLLDRIQDPGNLGTIIRTADAAGFDAVILGEGTVDVYNDKVIRSTQGSIFH 154
Query: 262 LPIV 265
+P++
Sbjct: 155 IPVI 158
>gi|19745515|ref|NP_606651.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS8232]
gi|94993688|ref|YP_601786.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
gi|139474366|ref|YP_001129082.1| 23S rRNA methyltransferase [Streptococcus pyogenes str. Manfredo]
gi|383479483|ref|YP_005388377.1| TrmH family RNA methyltransferase [Streptococcus pyogenes
MGAS15252]
gi|383493406|ref|YP_005411082.1| TrmH family RNA methyltransferase [Streptococcus pyogenes MGAS1882]
gi|386362160|ref|YP_006071491.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pyogenes Alab49]
gi|19747633|gb|AAL97150.1| putative rRNA methylase [Streptococcus pyogenes MGAS8232]
gi|94543310|gb|ABF33358.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10270]
gi|94547196|gb|ABF37242.1| 23S rRNA methyltransferase [Streptococcus pyogenes MGAS10750]
gi|134272613|emb|CAM30880.1| SpoU rRNA Methylase family protein [Streptococcus pyogenes str.
Manfredo]
gi|350276569|gb|AEQ23937.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Streptococcus pyogenes Alab49]
gi|378927473|gb|AFC65679.1| TrmH family RNA methyltransferase [Streptococcus pyogenes
MGAS15252]
gi|378929134|gb|AFC67551.1| TrmH family RNA methyltransferase [Streptococcus pyogenes MGAS1882]
Length = 245
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 15/129 (11%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGI 216
V VS V+K+L+ S + I +A ++IP F D K LVL+ +
Sbjct: 65 VIVSPQVLKELTDSPSPQGI--VAEVEIPKLAFPSDYKGK-------------YLVLEDV 109
Query: 217 QDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLK 276
QDPGNLGT++RTA A ++ GVFL D +++K LR+ +G+ F LPI Y L
Sbjct: 110 QDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCREL 169
Query: 277 DEFQMKLLA 285
E++ +LA
Sbjct: 170 QEYKTPILA 178
>gi|397620593|gb|EJK65797.1| hypothetical protein THAOC_13309 [Thalassiosira oceanica]
Length = 387
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 60/97 (61%), Gaps = 10/97 (10%)
Query: 169 GVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRT 228
G +S+ I A L++IPT +++D E + ++ L+LDG+ DPGN+GT+ R+
Sbjct: 189 GTVTSQGIAA--LVEIPT--YNLDELSSEGEEEGFY------LILDGLADPGNVGTICRS 238
Query: 229 AMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
A+A V LL CDP+S K +RAS GA F+LP++
Sbjct: 239 AVASGVRAVLLLESSCDPWSPKVVRASMGASFRLPVI 275
>gi|255659702|ref|ZP_05405111.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
20544]
gi|260848276|gb|EEX68283.1| RNA methyltransferase, TrmH family [Mitsuokella multacida DSM
20544]
Length = 271
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
++VLDG+QDPGN GT++RTA A GV L G D FS+K +RA+ G+ F LP+V+
Sbjct: 123 LVVLDGVQDPGNAGTIIRTADAVGADGVILTKGSVDVFSDKTVRATMGSLFHLPVVT 179
>gi|410456538|ref|ZP_11310398.1| 23S rRNA methyltransferase [Bacillus bataviensis LMG 21833]
gi|409927922|gb|EKN65047.1| 23S rRNA methyltransferase [Bacillus bataviensis LMG 21833]
Length = 249
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 31/196 (15%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S +NP VK KL + R G+ L+ G + E + E ++
Sbjct: 1 MKYIESVNNPKVKQWKKLL-TKKERDKSGTFLIEGFHLVEEALKQGEQILE-------VI 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ +KV++P D T V+ + LS ++ + I A+
Sbjct: 53 VSEKVDLPPRWDPAGTPVTLVTEEISNSLSETEAPQGIYAV------------------- 93
Query: 199 DCRSWFPSIHR---ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
CR + L +D +QDPGN GT++RTA A V + G D F+ K LR++
Sbjct: 94 -CRQTVSEVGEAKTFLFIDAVQDPGNFGTMIRTADAAGIDAVVVGRGSVDIFNSKVLRSA 152
Query: 256 RGACFQLPIVSGSWYH 271
+G+ F LPI+ G +
Sbjct: 153 QGSHFHLPIIKGDLHE 168
>gi|167973464|ref|ZP_02555741.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
gi|167974681|ref|ZP_02556958.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
gi|167976160|ref|ZP_02558437.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
gi|167988658|ref|ZP_02570329.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
gi|168363160|ref|ZP_02696330.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
gi|195867662|ref|ZP_03079664.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
gi|198273649|ref|ZP_03206184.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
gi|209554556|ref|YP_002284727.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
gi|225550441|ref|ZP_03771390.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
gi|225551107|ref|ZP_03772053.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
gi|171903015|gb|EDT49304.1| rRNA methylase [Ureaplasma urealyticum serovar 13 str. ATCC 33698]
gi|184208931|gb|EDU05974.1| rRNA methylase [Ureaplasma urealyticum serovar 5 str. ATCC 27817]
gi|188018840|gb|EDU56880.1| rRNA methylase [Ureaplasma urealyticum serovar 7 str. ATCC 27819]
gi|188997857|gb|EDU66954.1| rRNA methylase [Ureaplasma urealyticum serovar 11 str. ATCC 33695]
gi|195659595|gb|EDX52975.1| rRNA methylase [Ureaplasma urealyticum serovar 12 str. ATCC 33696]
gi|195660719|gb|EDX53974.1| rRNA methylase [Ureaplasma urealyticum serovar 9 str. ATCC 33175]
gi|198249677|gb|EDY74458.1| rRNA methylase [Ureaplasma urealyticum serovar 4 str. ATCC 27816]
gi|209542057|gb|ACI60286.1| rRNA methylase [Ureaplasma urealyticum serovar 10 str. ATCC 33699]
gi|225378922|gb|EEH01287.1| rRNA methylase [Ureaplasma urealyticum serovar 8 str. ATCC 27618]
gi|225379595|gb|EEH01957.1| rRNA methylase [Ureaplasma urealyticum serovar 2 str. ATCC 27814]
Length = 257
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 99/214 (46%), Gaps = 38/214 (17%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K ITS N + H L YR ++ ++ G + E +LQ + + ++
Sbjct: 2 LKVITSNKNEDIIHFYNLIHDKKYREANQLFIIEGFKLLDE------ALQNQQTIV-AII 54
Query: 139 LLDKVEVPEG--------LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS 190
+ ++V E DN+ + +VS V+KKLS I AI MK T
Sbjct: 55 INERVYDKEFETIFKYTLYDNVQIY--KVSENVIKKLSVNIDPSPILAIVKMKEETC--- 109
Query: 191 IDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
DVN +L+LD IQDPGNLGT+LRT AF V + C D ++ K
Sbjct: 110 -DVND-------------NVLLLDNIQDPGNLGTILRTCFAFNVKQV-IFNNCVDLYNAK 154
Query: 251 ALRASRGACFQLPIV--SGSWYHLE-VLKDEFQM 281
++AS GA F++ + + S LE +LK+ F +
Sbjct: 155 TIKASMGAIFKINFLRFNSSKLTLEFLLKNNFYL 188
>gi|339448434|ref|ZP_08651990.1| rRNA methylase [Lactobacillus fructivorans KCTC 3543]
Length = 255
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S N +K KL R G L+ ++E N+ Q T+ L +
Sbjct: 4 INSKQNQTIKEIKKLHTHKG-RQKSGEYLIESWHLVQEAINYLNLNQVVTI-----LATE 57
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ G D + + +S + +LS +++ I A+ KI F++ + D
Sbjct: 58 DQYLAHGDDLSGENIIVISDEIAAELSDTSTTQGI--FAVCKIEEQSFNV-----QKDSG 110
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+W L+LD +QDPGN+GT++RTA A + GV G ++ K LRA +G+ F
Sbjct: 111 AW-------LLLDNVQDPGNIGTMVRTADAAGFAGVIFGDGTSSEYNGKVLRAMQGSQFH 163
Query: 262 LPIV 265
LP++
Sbjct: 164 LPVI 167
>gi|197105361|ref|YP_002130738.1| rRNA methylase [Phenylobacterium zucineum HLK1]
gi|196478781|gb|ACG78309.1| rRNA methylase protein [Phenylobacterium zucineum HLK1]
Length = 261
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 50/73 (68%), Gaps = 9/73 (12%)
Query: 192 DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
+++ K ADC W ++HR+ +DPGNLGT++RTA A GGV L+ CCDP+S +A
Sbjct: 110 EIDPKAADC--WV-ALHRV------RDPGNLGTIVRTADAAGCGGVILVGECCDPYSVEA 160
Query: 252 LRASRGACFQLPI 264
+RA+ G+ F +P+
Sbjct: 161 VRATMGSVFAVPL 173
>gi|392330722|ref|ZP_10275337.1| 23S rRNA methyltransferase [Streptococcus canis FSL Z3-227]
gi|391418401|gb|EIQ81213.1| 23S rRNA methyltransferase [Streptococcus canis FSL Z3-227]
Length = 245
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 69/129 (53%), Gaps = 15/129 (11%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGI 216
V VSS V+K+L+ S + I +A +++P D K L+L+ +
Sbjct: 65 VMVSSEVLKELTDSPSPQGI--VAEVEMPELTLPTDYRGK-------------YLILEDV 109
Query: 217 QDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLK 276
QDPGNLGT++RTA A ++ GVFL D +++K LR+ +G+ F LPI Y L
Sbjct: 110 QDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTDVYQLCREL 169
Query: 277 DEFQMKLLA 285
E++ +LA
Sbjct: 170 QEYKTPILA 178
>gi|408376887|ref|ZP_11174490.1| tRNA/rRNA methyltransferase SpoU [Agrobacterium albertimagni AOL15]
gi|407748846|gb|EKF60359.1| tRNA/rRNA methyltransferase SpoU [Agrobacterium albertimagni AOL15]
Length = 286
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWY 270
+ LD ++DPGNLGT++RTA A GV L+ C DPFS + +RA+ G+ F LP+V +
Sbjct: 135 IALDRVRDPGNLGTIIRTADAAGASGVILVGDCTDPFSMETVRATMGSMFALPLVKTTPA 194
Query: 271 HLEVLKDEFQMKLLAGHAGGNEEPRQV 297
K +L+A H G + R +
Sbjct: 195 DFLKWKKSVDARLVATHLAGAVDYRTI 221
>gi|335357246|ref|ZP_08549116.1| 23S rRNA methyltransferase [Lactobacillus animalis KCTC 3501]
Length = 254
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 84/189 (44%), Gaps = 21/189 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K ITS SNP VK KL + S + L+ G ++E N + +Q+ V
Sbjct: 1 MKEITSVSNPQVKAWKKLVTKKGRQQSQ-TYLLDGWHLVKEALNSDEPIQKILVTPSFKY 59
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
L D +PE +S + K LS +S + I A F
Sbjct: 60 LADLEILPE------IQYFSISESIAKHLSETKSPQGIFA-------EVAFDQTTISPTT 106
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+W L+LDG+QDPGN+GT++RTA A + GV P D + K +R+ +G+
Sbjct: 107 ASGAW-------LLLDGVQDPGNIGTMVRTADAAGFSGVVFGPKTADMYQPKVVRSMQGS 159
Query: 259 CFQLPIVSG 267
F L +V+
Sbjct: 160 QFHLQLVTA 168
>gi|334142219|ref|YP_004535426.1| rRNA methylase [Novosphingobium sp. PP1Y]
gi|333940250|emb|CCA93608.1| rRNA methylase [Novosphingobium sp. PP1Y]
Length = 269
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT---TPIREIYNFNRSLQERTVRMDC 136
+ I+ SNP VK LR+ +R L G T RE L T R D
Sbjct: 5 RTISGFSNPLVKFLRSLREKK-HRKREKRFLAEGLRLLTDARECGIVPEMLVMATGR-DP 62
Query: 137 LLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
LLD +E + + V + ++ K++G + +++ + + T + ++D
Sbjct: 63 HPLLDALE--DAVAAAGGEIVEMDVDILAKVTGKDNPQAVAGV-FAEFDTRIANVDRRAA 119
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
W LV ++DPGNLGT+LRT A GG+ L+ C DPFS +A+RAS
Sbjct: 120 PI----W-------LVAQALRDPGNLGTMLRTGDAVGAGGLILIDDCADPFSVEAVRASM 168
Query: 257 GACFQLPIVSGSWYHLEVLKDEF 279
GA F + W DEF
Sbjct: 169 GAIFTQKLAIARW-------DEF 184
>gi|417963163|ref|ZP_12605186.1| rRNA methylase [Candidatus Arthromitus sp. SFB-3]
gi|380334095|gb|EIA24567.1| rRNA methylase [Candidatus Arthromitus sp. SFB-3]
Length = 186
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI-VSGSW 269
++D IQDPGNLGT++RTA+A GV L+ G D +++K LRA+ G+ F++ I S+
Sbjct: 41 FLIDKIQDPGNLGTIIRTAVAVNALGVILMKGSVDLYNDKVLRATMGSIFKININFIESY 100
Query: 270 YHL-EVLKDEFQMKLLAGHAGGN 291
L E +K++F++ + H N
Sbjct: 101 LELNEFIKNDFKLVIADAHGDNN 123
>gi|399057192|ref|ZP_10743819.1| rRNA methylase [Novosphingobium sp. AP12]
gi|398042226|gb|EJL35260.1| rRNA methylase [Novosphingobium sp. AP12]
Length = 277
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 90/212 (42%), Gaps = 26/212 (12%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT---TPIREIYNFNRSLQERTVRMDC 136
+ IT SNP VK LR +R L G T RE L R D
Sbjct: 13 RTITGFSNPLVKFLRSLRDKK-HRKRERRFLAEGLRLLTDARECGIVPEMLVMAIGR-DP 70
Query: 137 LLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
L+D +E + + V + ++ K++G + +++ + + T + ID N
Sbjct: 71 HPLVDALE--DSVIAAGGEIVEMDVDILAKVTGKDNPQAVAGV-FTEFDTGLAKIDRNSA 127
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
W LV ++DPGNLGT+LRT A GG+ L+ C DPFS +A+RAS
Sbjct: 128 PI----W-------LVAQALRDPGNLGTMLRTGDAVGAGGLILIDDCADPFSVEAVRASM 176
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHA 288
GA F + W DEF L AG
Sbjct: 177 GAIFTQQLAIARW-------DEFIFWLRAGDG 201
>gi|384135999|ref|YP_005518713.1| tRNA/rRNA methyltransferase SpoU [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290084|gb|AEJ44194.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 271
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 59/96 (61%), Gaps = 5/96 (5%)
Query: 172 SSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMA 231
S ++ A+A + P V ++ +A+ R + P R+LVLD IQDPGN+GTL+R+A A
Sbjct: 87 SPQAFAAVADTETPQGVMAV-AAIPQAEPR-YGP---RVLVLDAIQDPGNVGTLVRSAEA 141
Query: 232 FKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
F +G + G DP++ K +RAS G F++ V+G
Sbjct: 142 FGFGEIVFGTGTVDPYAPKVVRASMGGLFRVNAVAG 177
>gi|359401434|ref|ZP_09194402.1| rRNA methylase [Novosphingobium pentaromativorans US6-1]
gi|357597109|gb|EHJ58859.1| rRNA methylase [Novosphingobium pentaromativorans US6-1]
Length = 269
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT---TPIREIYNFNRSLQERTVRMDC 136
+ I+ SNP VK LR+ +R L G T RE L T R D
Sbjct: 5 RTISGFSNPLVKFLRSLREKK-HRKREKRFLAEGLRLLTDARECGIVPEMLVMATGR-DP 62
Query: 137 LLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
LLD +E + + V + ++ K++G + +++ + + T + ++D
Sbjct: 63 HPLLDALE--DAVAAAGGEIVEMDVDILAKVTGKDNPQAVAGV-FAEFDTRIANVDRRAA 119
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
W LV ++DPGNLGT+LRT A GG+ L+ C DPFS +A+RAS
Sbjct: 120 PI----W-------LVAQALRDPGNLGTMLRTGDAVGAGGLILIDDCADPFSVEAVRASM 168
Query: 257 GACFQLPIVSGSWYHLEVLKDEF 279
GA F + W DEF
Sbjct: 169 GAIFTQKLAIARW-------DEF 184
>gi|226227758|ref|YP_002761864.1| putative RNA methyltransferase [Gemmatimonas aurantiaca T-27]
gi|226090949|dbj|BAH39394.1| putative RNA methyltransferase [Gemmatimonas aurantiaca T-27]
Length = 265
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%)
Query: 204 FPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
P RILVLD +QDPGN+GT++RTA A LPG D ++ K +R S GA F P
Sbjct: 104 MPPCARILVLDALQDPGNVGTVIRTAAALGVSATIALPGTVDLWNAKVVRGSMGALFHHP 163
Query: 264 IVSGSW 269
+++ SW
Sbjct: 164 VLAMSW 169
>gi|56808573|ref|ZP_00366304.1| COG0566: rRNA methylases [Streptococcus pyogenes M49 591]
Length = 245
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 15/116 (12%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGI 216
V VS V+K+L+ S + I +A ++IP F D K LVL+ +
Sbjct: 65 VIVSPQVLKELTDSPSPQGI--VAEVEIPKLAFPSDYKGK-------------YLVLEDV 109
Query: 217 QDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHL 272
QDPGNLGT++RTA A ++ GVFL D +++K LR+ +G+ F LPI + Y L
Sbjct: 110 QDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTNVYQL 165
>gi|317131314|ref|YP_004090628.1| tRNA/rRNA methyltransferase SpoU [Ethanoligenens harbinense YUAN-3]
gi|315469293|gb|ADU25897.1| tRNA/rRNA methyltransferase (SpoU) [Ethanoligenens harbinense
YUAN-3]
Length = 263
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 29/219 (13%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
ITS NP V+ ++LR++ ++R G ++ G + + E VRM+ +
Sbjct: 3 EITSRDNPLVRDYVRLRENRAFRRETGRFVLEGARLLGDAL-------ESGVRMETVFFT 55
Query: 141 DKV--EVPEGLDNISTHTVRVSSV---VMKKLSGVQSSESIEAIALMKIPTSVFSID-VN 194
+ + P L + RV V V KL+ + + + A A M F++D +N
Sbjct: 56 GEACEKHPALLASARDGGARVCLVGDAVAAKLADTAAPQGVFAAAFML--DKAFALDKIN 113
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
A L+ I+DPGNLG +LRTA A GV L GC D ++ K +RA
Sbjct: 114 LGGA-----------YAALENIRDPGNLGAVLRTAEALGLSGVLLSAGCADIYAPKVVRA 162
Query: 255 SRGACFQLPIVSGSWY--HLEVLKDEFQMKLLAGHAGGN 291
S GA F+ L +L+++ ++ LA AGG
Sbjct: 163 SMGAVFRTAFFQTEDLPAALSLLREK-GLQTLAALAGGT 200
>gi|320160779|ref|YP_004174003.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
gi|319994632|dbj|BAJ63403.1| RNA methyltransferase [Anaerolinea thermophila UNI-1]
Length = 271
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 15/189 (7%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS +N VK +L Q R G + G + E + + V D L
Sbjct: 2 ITSPANEQVKRIRRL-QERKERERTGLFFLEGIRIVAEAAERGEAFETLIVSPDRLQSDF 60
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMK-IPTSVFSIDVNQKEADC 200
++ E L T + VSS+V ++LS + + I A+ + +P S++ +
Sbjct: 61 AWKLVENLRRNGTPILEVSSLVFERLSQKEGPQGIAAVVHQRWMPLGAVSVE------NG 114
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
+ W + LD + DPGNLGT+LRT A GV LL DP+ +RAS GA F
Sbjct: 115 KPW-------VALDSVADPGNLGTILRTLDAVGGAGVILLDQSTDPYDPSCVRASMGALF 167
Query: 261 QLPIVSGSW 269
L +V S+
Sbjct: 168 DLHLVRTSF 176
>gi|389594921|ref|XP_003722683.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|323363911|emb|CBZ12917.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 569
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 27/199 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I ++ V+H LKL + YR + ++ G I E+ + R + ++C
Sbjct: 79 IDDVNHALVQHFLKLSTNDKYRQARQMLVIGGRAMIEELCRAGH--RPRHLMVEC----- 131
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+PE L H R + VV+ V S S+ F+I +
Sbjct: 132 GKPIPEFL-----HDRRKTDVVL-----VDRSVSVAVTPGSDGYVGDFAIPTPPMKEKLI 181
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+ ++R+LVLD I+DPG LGTLLRTA +++ + C D + + +RA+RGA FQ
Sbjct: 182 ANHQRLNRVLVLDNIEDPGVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARGAHFQ 241
Query: 262 --LPIVSGSWYHLEVLKDE 278
+PI + LKDE
Sbjct: 242 TSVPIYT--------LKDE 252
>gi|339634381|ref|YP_004726022.1| rRNA methylase [Weissella koreensis KACC 15510]
gi|420162010|ref|ZP_14668770.1| RNA methyltransferase [Weissella koreensis KCTC 3621]
gi|338854177|gb|AEJ23343.1| rRNA methylase [Weissella koreensis KACC 15510]
gi|394744444|gb|EJF33386.1| RNA methyltransferase [Weissella koreensis KCTC 3621]
Length = 255
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWY 270
L LD IQDPGN+GT++RTA A + GV G DP+S KA+RA +G+ F L + +G +
Sbjct: 113 LFLDAIQDPGNVGTMVRTADAAGFAGVVFGQGSVDPYSPKAVRAMQGSQFHLQLANGDLH 172
Query: 271 HL--EVLKDEFQM 281
E +++EFQ+
Sbjct: 173 EWIPEFVRNEFQV 185
>gi|221505261|gb|EEE30915.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 562
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 41/241 (17%)
Query: 89 FVKHCLKLRQSSSYRHSHGSALVVGTTPIREI---YNFNR---SLQERTVRMDCLLLLDK 142
V H L + + SYR S S LV G++ + E+ + R S Q + V +D L +
Sbjct: 183 LVTHLLSVAGNPSYRTSRQSVLVSGSSLVHELRKSFQCKRLIISRQSKGVNLDACAHLAE 242
Query: 143 VEVP----------------EGLDNISTHTVR---VSSVVMKKLSGVQSSESIEAIALMK 183
+ P E + + H V V+ +++K++G+ S + +A M+
Sbjct: 243 GDTPVSPTVSNVCNSLSAANESVHGPAGHGVETHFVTDRILRKIAGLHSYDG-GCVAEMR 301
Query: 184 IPTSVFSIDVNQKEADC-----RSWFPSIHRILVLDGIQDP---------GNLGTLLRTA 229
P S + K C S+ + G+++ G LGT+LR+A
Sbjct: 302 HPPPAASFG-DMKLLLCLGRPPNSFCETDTACSSFKGLEEDRDNFERLMLGILGTILRSA 360
Query: 230 MAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAG 289
A +W GV+LLP C D F+ A+RAS+GA F LP GSW E + + H
Sbjct: 361 AALQWQGVWLLPQCPDVFNPLAIRASQGALFWLPYRRGSWDDFVKFTSEQDLLICIPHEA 420
Query: 290 G 290
G
Sbjct: 421 G 421
>gi|311031388|ref|ZP_07709478.1| RNA methyltransferase, TrmH family [Bacillus sp. m3-13]
Length = 252
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 16/106 (15%)
Query: 163 VMKKLSGVQSSESIEAIALMKIPTS-VFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGN 221
V+K++S ++ + + AI +IP ++ NQK IL+LD +QDPGN
Sbjct: 77 VLKEISETETPQGVAAIC--RIPVQHDLTLQPNQK-------------ILLLDNVQDPGN 121
Query: 222 LGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+GT++RTA A V L GC D +S K +R+++G+ F LPI G
Sbjct: 122 VGTMIRTADAAGMDMVILGEGCADLYSSKVIRSTQGSIFHLPIARG 167
>gi|390168487|ref|ZP_10220446.1| tRNA/rRNA methyltransferase SpoU [Sphingobium indicum B90A]
gi|389588906|gb|EIM66942.1| tRNA/rRNA methyltransferase SpoU [Sphingobium indicum B90A]
Length = 265
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 25/196 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+ IT SNP VK LR+ +R + G L G + E +E V + L
Sbjct: 2 AREITGFSNPLVKRVRSLREKK-FRKAEGLFLAEGLRILTEA-------REEGVLPEMLF 53
Query: 139 LLDK-----VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
E+ ++ + + ++ K+SG + +++ + ++ T + +D
Sbjct: 54 HAGSTHPLAAELIAAMEAAGGDVIETTPDILSKISGKDNPQAVVGVYRDRL-TPLAKLD- 111
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
+ +AD W +V ++DPGNLGT+LRT A GG+ L+ C DPFS +++R
Sbjct: 112 -RGKADI--W-------IVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVR 161
Query: 254 ASRGACFQLPIVSGSW 269
AS GA F I W
Sbjct: 162 ASMGALFTQSITQARW 177
>gi|304387556|ref|ZP_07369745.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC
13091]
gi|304338443|gb|EFM04564.1| TrmH family RNA methyltransferase [Neisseria meningitidis ATCC
13091]
Length = 261
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 92/201 (45%), Gaps = 44/201 (21%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+I+ST+N ++H +L +R + ++ G ++ LQ +
Sbjct: 1 MKHISSTNNEHIRHLHRLLSQGKFRRQYAQTVLEG------VHLLQVFLQSGGKPL---- 50
Query: 139 LLDKVEVPEGLDNISTHTVR-------------VSSVVMKKLSGVQSSESIEAIALMKIP 185
V +PEG + + VR VS ++KK+S + ++ + +AL+ IP
Sbjct: 51 ---GVYIPEG--KMPSEEVRRLRAVVPEDRVFSVSDGILKKISSLTCADDV--LALIDIP 103
Query: 186 TSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCD 245
+ P+ +VLDG+QDPGN+GT+LR+A A G V L G D
Sbjct: 104 DA--------------GALPAGGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSAD 149
Query: 246 PFSEKALRASRGACFQLPIVS 266
+S K LRA GA F L I S
Sbjct: 150 VWSPKVLRAGMGAHFLLDIYS 170
>gi|167758621|ref|ZP_02430748.1| hypothetical protein CLOSCI_00961 [Clostridium scindens ATCC 35704]
gi|336421296|ref|ZP_08601455.1| hypothetical protein HMPREF0993_00832 [Lachnospiraceae bacterium
5_1_57FAA]
gi|167663817|gb|EDS07947.1| putative RNA methyltransferase, TrmH family, group 3 [Clostridium
scindens ATCC 35704]
gi|336001482|gb|EGN31619.1| hypothetical protein HMPREF0993_00832 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 263
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 40/225 (17%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT-----TP---IREIYNFNRSLQERTVR 133
ITST+N VKH L++ R G LV G TP ++E+Y + S ++ R
Sbjct: 2 ITSTANAKVKHLANLKRKRKLRDEEGVFLVEGIRMFRETPKMLLKEVYA-SESFYKKERR 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
M E L + +S V +S ++ + I + V +D
Sbjct: 61 M----------TDEALKGSGAYLEILSDTVFGYVSDTKTPQGILCV--------VKQLDY 102
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
+EA + + H ++VL+ +QDPGNLGT+LRTA G+ L C D ++ K +R
Sbjct: 103 RLEEA---AAGRAAH-LIVLNRLQDPGNLGTILRTAEGAGVTGILLDQECVDIYNPKTIR 158
Query: 254 ASRGACFQLPIVSGSWYHLEVLKDEFQMK-----LLAGHAGGNEE 293
++ G+ +++P +Y ++ KD ++K + A H G ++
Sbjct: 159 STMGSIYRMPF----YYSQDLKKDIGRLKDKGICIYAAHLNGRQD 199
>gi|160913562|ref|ZP_02076253.1| hypothetical protein EUBDOL_00038 [Eubacterium dolichum DSM 3991]
gi|158434114|gb|EDP12403.1| RNA methyltransferase, TrmH family [Eubacterium dolichum DSM 3991]
Length = 244
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 18/129 (13%)
Query: 139 LLDKVEVPEG--LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
LLD + V EG D + VSS++M+KLS S + + M P
Sbjct: 46 LLDCILVEEGHTYDTGAYPCYEVSSMIMRKLSDSVSGTWLIGVCHMPCPMD--------- 96
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
F ++++LD +QDPGN+GT+LR+A +F + V L C D +S+K +R+++
Sbjct: 97 -------FVMGEKVILLDDVQDPGNVGTILRSAYSFGFDTVVLSKHCADVYSDKVIRSTQ 149
Query: 257 GACFQLPIV 265
GA F + ++
Sbjct: 150 GALFHMQVI 158
>gi|398306006|ref|ZP_10509592.1| RNA methylase [Bacillus vallismortis DV1-F-3]
Length = 248
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 27/201 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VK KL + R + L+ G + E +++E +L
Sbjct: 1 MKQIESAKNQKVKDWKKL-HTKKERTKTNTFLIEGEHLVEEALKSEGTVKE-------IL 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P LD +S +S ++ ++ + I A+ M
Sbjct: 53 VKDETKIPSALD-VSIQCYVLSEDAFSAVTETETPQQIAAVCHMP--------------- 96
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
S R+L++D +QDPGNLGT++RTA A V L G D ++ K LR+++G+
Sbjct: 97 --EEKLASPRRVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTTDAYNGKTLRSAQGS 154
Query: 259 CFQLPIVSGSWY-HLEVLKDE 278
F +P+V + + +++ LK E
Sbjct: 155 HFHIPVVRKNLHTYVDELKAE 175
>gi|34396174|gb|AAP55640.1| rRNA methylase [Spiroplasma citri]
gi|110004355|emb|CAK98693.1| putative rrna methyl transferase protein [Spiroplasma citri]
Length = 262
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 13/106 (12%)
Query: 159 VSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQD 218
VS ++ KLS ++S++I + ID+ + + F IL+L+ IQD
Sbjct: 73 VSESILTKLSQSKNSQNIIGV-----------IDLTKVKEQNNFQFN--QNILLLENIQD 119
Query: 219 PGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
PGN+GTL+RT + F + + L D F++K LRAS+GA F++ I
Sbjct: 120 PGNVGTLIRTGLGFGFTNIILYNHTVDLFNDKVLRASQGAIFKVAI 165
>gi|347542239|ref|YP_004856875.1| TrmH family RNA methyltransferase [Candidatus Arthromitus sp.
SFB-rat-Yit]
gi|346985274|dbj|BAK80949.1| RNA methyltransferase, TrmH family [Candidatus Arthromitus sp.
SFB-rat-Yit]
Length = 260
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 84/155 (54%), Gaps = 20/155 (12%)
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++D+ +GL N+ + S + +K+ + ++ I IA +KI + D N+
Sbjct: 61 IIDRFNFKDGLFNV----IVFSDELFEKVKQTEKTQGI--IACLKIRDTFKKFDFNE--- 111
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
I+ ++D IQDPGNLGT++RTA+A G+ L+ G D +++K LR++ G+
Sbjct: 112 -------GIY--FLIDKIQDPGNLGTIIRTAVAVNALGIILIKGSVDIYNDKVLRSTMGS 162
Query: 259 CFQLPI-VSGSWYHL-EVLKDEFQMKLLAGHAGGN 291
F++ I S+ L E ++++F++ + ++ N
Sbjct: 163 IFKININFIESYLELNEFIENDFKLVIADAYSDNN 197
>gi|443632195|ref|ZP_21116375.1| putative RNA methylase [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443348310|gb|ELS62367.1| putative RNA methylase [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 248
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 26/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VK KL + R + L+ G + E +++E +L
Sbjct: 1 MKQIESAKNQKVKDWKKL-HTKKERTKTNTFLIEGEHLVEEALKSPGTVKE-------IL 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P LD +S +S ++ ++ + I A+ M
Sbjct: 53 VKDETKIPSELD-VSIQCYVLSEDAFSAVTETETPQQIAAVCHMP--------------- 96
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
S R+L++D +QDPGNLGT++RTA A V L G D F+ K LR+++G+
Sbjct: 97 --EEKLASPQRVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGS 154
Query: 259 CFQLPIV 265
F +P+V
Sbjct: 155 HFHIPVV 161
>gi|269837199|ref|YP_003319427.1| tRNA/rRNA methyltransferase SpoU [Sphaerobacter thermophilus DSM
20745]
gi|269786462|gb|ACZ38605.1| tRNA/rRNA methyltransferase (SpoU) [Sphaerobacter thermophilus DSM
20745]
Length = 293
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSW 269
L+ DGI+DPGNLGTLLR A+ GV++ G DPF+ K +RA GA F+LPI W
Sbjct: 131 LIADGIRDPGNLGTLLRAALGAGAHGVYVTAGTTDPFAPKVVRAGMGAHFRLPIAYLDW 189
>gi|221483983|gb|EEE22287.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 554
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 41/241 (17%)
Query: 89 FVKHCLKLRQSSSYRHSHGSALVVGTTPIREI---YNFNR---SLQERTVRMDCLLLLDK 142
V H L + + SYR S S LV G++ + E+ + R S Q + V +D L +
Sbjct: 183 LVTHLLSVAGNPSYRTSRQSVLVSGSSLVHELRKSFQCKRLIISRQSKGVNLDACAHLAE 242
Query: 143 VEVP----------------EGLDNISTHTVR---VSSVVMKKLSGVQSSESIEAIALMK 183
+ P E + + H V V+ +++K++G+ S + +A M+
Sbjct: 243 GDTPVSPTVSNVCNSLSAANESVHGPAGHGVETHFVTDRILRKIAGLHSYDG-GCVAEMR 301
Query: 184 IPTSVFSIDVNQKEADC-----RSWFPSIHRILVLDGIQDP---------GNLGTLLRTA 229
P S + K C S+ + G+++ G LGT+LR+A
Sbjct: 302 HPPPAASFG-DMKLLLCLGRPPNSFCETDTACSSFKGLEEDRDNFERLMLGILGTILRSA 360
Query: 230 MAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAG 289
A +W GV+LLP C D F+ A+RAS+GA F LP GSW E + + H
Sbjct: 361 AALQWQGVWLLPQCPDVFNPLAIRASQGALFWLPYRRGSWDDFVKFTSEQDLLICIPHEA 420
Query: 290 G 290
G
Sbjct: 421 G 421
>gi|452752602|ref|ZP_21952343.1| rRNA methylase [alpha proteobacterium JLT2015]
gi|451959993|gb|EMD82408.1| rRNA methylase [alpha proteobacterium JLT2015]
Length = 266
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 40/54 (74%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
+V + ++DPGNLGT+LRTA A GGV LL CDPFS +A+RAS GA F +PI
Sbjct: 120 IVCESLKDPGNLGTILRTADAVGAGGVILLDQSCDPFSVEAVRASMGALFTIPI 173
>gi|407777248|ref|ZP_11124518.1| tRNA/rRNA methyltransferase SpoU [Nitratireductor pacificus pht-3B]
gi|407300948|gb|EKF20070.1| tRNA/rRNA methyltransferase SpoU [Nitratireductor pacificus pht-3B]
Length = 273
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 25/225 (11%)
Query: 79 VKNITSTSNPFVK--HCLKLRQSSSYRH---SHGSALVVGTTPIREIYNFNRSLQERTVR 133
+K +TS +NP +K L L++ H + G LV I F RT
Sbjct: 1 MKEVTSLTNPIIKDIRALALKKFRDREHLFMTEGLKLV--------IDAFEAGWTIRT-- 50
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
LL + ++ ++ TV +V+ V S + + A+ P V +
Sbjct: 51 ---LLYAKAGRGNDAVERLAARTVAAGGLVL-----VVSEKVLSAVTRRDNPQMVVGV-F 101
Query: 194 NQKEADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
QK + P+ + V LD ++DPGNLGT+LRTA A GV L+ C D FS + +
Sbjct: 102 EQKTLPLDAVRPADADVWVALDRVRDPGNLGTILRTADAVGAKGVILVGDCTDSFSIETV 161
Query: 253 RASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
RA+ G+ F +PIV S + + +++ H G+ + R V
Sbjct: 162 RATMGSIFAVPIVRASPEAFLAWRRGYAGRMVGTHLEGSVDYRTV 206
>gi|294671329|ref|ZP_06736180.1| hypothetical protein NEIELOOT_03038 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291306961|gb|EFE48204.1| hypothetical protein NEIELOOT_03038 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 262
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 97/191 (50%), Gaps = 28/191 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+++I S N +KH KL S++ R + G L+ GT + N R +C+
Sbjct: 1 MEHIASAQNSRIKHLAKLAASAAKRRAFGQTLLEGTHLLEAFLNAGG-------RPECVY 53
Query: 139 L----LDKVEVPEGLDNI-STHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ L+ E+ L + S TV V++ ++ +L+G+ +I +AL+K+P S +
Sbjct: 54 VAENRLEDAEISALLQRMPSEKTVSVAAPILGRLTGLGEGGNI--VALIKLP----SAEK 107
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
++ DC +VL+ +QDPGN+GT+LR+A A + L C D +S K LR
Sbjct: 108 LPEDGDC----------VVLERVQDPGNIGTILRSAAASGVRDIVLGADCADVWSPKVLR 157
Query: 254 ASRGACFQLPI 264
A+ GA F L +
Sbjct: 158 AAMGAHFLLTL 168
>gi|358637403|dbj|BAL24700.1| tRNA/rRNA methyltransferase protein [Azoarcus sp. KH32C]
Length = 264
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 18/190 (9%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+ITS NP VK L SS R SHG L+ G ++ + L+E V L
Sbjct: 1 MKHITSRDNPTVKRLHGLAHSSRDRRSHGQTLLDGPHLVQAALDARFPLRELVVSDQGL- 59
Query: 139 LLDKVEVPEGLDNIS-THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
++ E+ L+ T + ++ + +S V + + A+ +D+
Sbjct: 60 --ERDEISGLLEQCGGTPVLHLTDSLFAHVSPVDAPSGLMAV-----------VDLPDAA 106
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
++ S+ L+LD IQD GNLGT+LRTA A V + PGC +S + LRA G
Sbjct: 107 GHGAAFDASL---LLLDTIQDAGNLGTILRTAAAAGIPDVLMTPGCAHAWSPRVLRAGMG 163
Query: 258 ACFQLPIVSG 267
F L I G
Sbjct: 164 GHFCLRIHEG 173
>gi|237836581|ref|XP_002367588.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
gi|211965252|gb|EEB00448.1| hypothetical protein, conserved [Toxoplasma gondii ME49]
Length = 554
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 41/241 (17%)
Query: 89 FVKHCLKLRQSSSYRHSHGSALVVGTTPIREI---YNFNR---SLQERTVRMDCLLLLDK 142
V H L + + SYR S S LV G++ + E+ + R S Q + V +D L +
Sbjct: 183 LVTHLLSVAGNPSYRTSRQSVLVSGSSLVHELRKSFQCKRLIISRQSKGVNLDACAHLAE 242
Query: 143 VEVP----------------EGLDNISTHTVR---VSSVVMKKLSGVQSSESIEAIALMK 183
+ P E + + H V V+ +++K++G+ S + +A M+
Sbjct: 243 GDTPVSPTVSNVCNSLSAANESVHGPAGHGVETHFVTDRILRKIAGLHSYDG-GCVAEMR 301
Query: 184 IPTSVFSIDVNQKEADC-----RSWFPSIHRILVLDGIQDP---------GNLGTLLRTA 229
P S + K C S+ + G+++ G LGT+LR+A
Sbjct: 302 HPPPAASFG-DMKLLLCLGRPPNSFCETDTACSSFKGLEEDTDNFERLMLGILGTILRSA 360
Query: 230 MAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAG 289
A +W GV+LLP C D F+ A+RAS+GA F LP GSW E + + H
Sbjct: 361 AALQWQGVWLLPQCPDVFNPLAIRASQGALFWLPYRRGSWDDFVKFTSEQDLLICIPHEA 420
Query: 290 G 290
G
Sbjct: 421 G 421
>gi|314933335|ref|ZP_07840700.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87]
gi|313653485|gb|EFS17242.1| RNA methyltransferase, TrmH family [Staphylococcus caprae C87]
Length = 246
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 25/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K+ + R G AL+ G I E Y + + + L
Sbjct: 1 MEQITSAQNNKIKNA-NKLKKKRDRDKTGLALIEGIHLIEEAY-------QSGIEITQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+++ E L + + ++ V + LSG + + A+++ P N+ EA
Sbjct: 53 VIEPDRTDEALLDYANEAYEINMKVAEALSGTVTPQGF--FAVIEKP------QYNEIEA 104
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++L++D IQDPGNLGTL+RTA A + + G DP+ +K +RAS+G+
Sbjct: 105 ---------LQVLLIDRIQDPGNLGTLIRTADAAGIDLIVMEKGTADPYQDKVMRASQGS 155
Query: 259 CFQLPIV 265
F +P+V
Sbjct: 156 IFHIPVV 162
>gi|406669619|ref|ZP_11076887.1| hypothetical protein HMPREF9707_00790 [Facklamia ignava CCUG 37419]
gi|405582961|gb|EKB56935.1| hypothetical protein HMPREF9707_00790 [Facklamia ignava CCUG 37419]
Length = 261
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 92/190 (48%), Gaps = 18/190 (9%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ I S +N ++ KL +S R LV GT + E + V MDCL+
Sbjct: 3 IEVIRSANNAKLRSWRKLA-TSKERRKQQKYLVEGTHLVEEAL-------KHQVAMDCLI 54
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ + E D++ TH + V++ Q +A P +F+ V +
Sbjct: 55 MTESY-YAEQWDHLQTHDQCFTPVLIADSLASQ-------LAQTPSPQGIFA--VIEVAN 104
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
D ++ L++D IQDPGNLGT++RTA A + L GC D +++K +R+++G+
Sbjct: 105 DQNLPLNDGNKYLLVDRIQDPGNLGTMIRTADAAGIDAIILGEGCVDLYNDKVIRSTQGS 164
Query: 259 CFQLPIVSGS 268
+ LPIV+ S
Sbjct: 165 LWHLPIVTLS 174
>gi|302380365|ref|ZP_07268835.1| RNA methyltransferase, TrmH family [Finegoldia magna
ACS-171-V-Col3]
gi|302311855|gb|EFK93866.1| RNA methyltransferase, TrmH family [Finegoldia magna
ACS-171-V-Col3]
Length = 243
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 89/195 (45%), Gaps = 35/195 (17%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN KH L + YR + ++ G +E N ++++ +R
Sbjct: 2 ITSTSNKIYKHVKSLYKKK-YRQKYNEFVIEGYKLYQEAIKSNINIKQVIIR-------- 52
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
EG +N V S LS + + E I + + QK D +
Sbjct: 53 -----EG-ENFIDECVYFDSKTFNSLSEMNNPEGIICVVSF----------IEQK--DVK 94
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
S +IL L+ I DPGNLGT++R+A AF + + L CD ++ K +R++ G+ F+
Sbjct: 95 S-----DQILFLENINDPGNLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFR 149
Query: 262 LPIVSGSWYHLEVLK 276
+ I S+ ++ VL+
Sbjct: 150 MNI---SYENINVLE 161
>gi|89098882|ref|ZP_01171762.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911]
gi|89086286|gb|EAR65407.1| 23S rRNA methyltransferase [Bacillus sp. NRRL B-14911]
Length = 249
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 27/191 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+I S +NP +K KL + R G L G E ++++ L+
Sbjct: 1 MKHIQSANNPQIKQWRKLL-AKKERDKTGMFLAEGYHLAEEALKGEKAIE--------LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALM-KIPTSVFSIDVNQKE 197
+ + E+P D V+ ++K LS ++ + + A+ K P SV
Sbjct: 52 ISENAELPVRWDYGELPVTMVTDEIIKSLSDTETPQGVIAVCKEEKTPASVKG------- 104
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
S F L++D +QDPGNLGT++RTA A V + G D ++ K LR+++G
Sbjct: 105 ----STF------LLIDAVQDPGNLGTMIRTADAAGIDAVIVGKGSADIYNPKVLRSAQG 154
Query: 258 ACFQLPIVSGS 268
+ F LPI+ GS
Sbjct: 155 SHFHLPIIRGS 165
>gi|86133430|ref|ZP_01052012.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
gi|85820293|gb|EAQ41440.1| SpoU rRNA methylase family protein [Polaribacter sp. MED152]
Length = 264
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K ITS+ N ++K LKL++ S R G ++ G I N + RTV + C+
Sbjct: 1 MKQITSSQNTYIKGLLKLQEKSRERKKLGLFIIEGLREINLALKANYTF--RTV-LFCID 57
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
L+ K V +D+ ST + +S V +KL+ S+E I A+A K S+ I + K
Sbjct: 58 LIQKTAVDTLIDS-STEVIEISKEVYEKLAYRNSTEGIIAVANAK-SFSLGEISFSNKNP 115
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
IL+ + ++ PGN+G LLRTA A V + D ++ +R+S G
Sbjct: 116 ----------LILIAESLEKPGNVGALLRTADAANVDAVIIANPKSDLYNSNIIRSSVGC 165
Query: 259 CFQLPIVSGSWYHLEVLKDEFQMKLLAG 286
F I G+ + E ++ + A
Sbjct: 166 VFTNQIAVGTSEEIITFLKENKISIYAA 193
>gi|82702991|ref|YP_412557.1| tRNA/rRNA methyltransferase SpoU [Nitrosospira multiformis ATCC
25196]
gi|82411056|gb|ABB75165.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosospira multiformis ATCC
25196]
Length = 279
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 24/198 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMD--- 135
+K ITS NP K +KLR+SS R G L+ G + + + E+ V +
Sbjct: 1 MKFITSRDNPTFKELVKLRESSRQRRIAGLTLLDGIHLVEAYFALGKP--EKLVASESGR 58
Query: 136 ----CLLLLDKV-EVPEGLDNISTH----TVRVSSVVMKKLSGVQSSESIEAIALMKIPT 186
LL+KV +V + +H + + ++ +++S V+++ + AI + P
Sbjct: 59 ENPEIRFLLEKVTKVTQVTKGGGSHREAAAIVLPDLLFREVSTVKTATGLMAIVPIPSPE 118
Query: 187 SVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDP 246
++ Q E+ C ++L+ IQDPGN+G++LR+A A V+L C D
Sbjct: 119 AIPLKKRGQAESFC----------VLLEAIQDPGNVGSILRSAAAAGASDVYLSNDCADA 168
Query: 247 FSEKALRASRGACFQLPI 264
+S K LRA+ GA F + I
Sbjct: 169 WSPKTLRAAMGAHFLVRI 186
>gi|225871153|ref|YP_002747100.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi
4047]
gi|225700557|emb|CAW95049.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp. equi
4047]
Length = 245
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 200 CRSWFPSIH--RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
C+ P+ + + L+L+ IQDPGNLGT++RTA A K+ GVFL D +++K LR+ +G
Sbjct: 91 CQQALPTSYAGKYLILEDIQDPGNLGTIIRTADAAKFDGVFLSEKSADVYNQKTLRSMQG 150
Query: 258 ACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
+ F LPI Y + + + ++ +LA
Sbjct: 151 SHFHLPIWRTDIYQVSQVMQQQKIPVLA 178
>gi|71894580|ref|YP_278688.1| tRNA/rRNA methyltransferase [Mycoplasma synoviae 53]
Length = 237
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 39/195 (20%)
Query: 84 STSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKV 143
S NP +K KL Q+ YR L+ G I E + + + +
Sbjct: 3 SKQNPLIKEYKKL-QNKKYRKEKQQFLLEGFNLISEAKKYTNVITLESSK---------- 51
Query: 144 EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSW 203
D I ++RV ++K LS +S +SI +A PT+
Sbjct: 52 ------DLIYKDSIRVDYEIIKHLSETKSPQSIIGVASFLKPTN---------------- 89
Query: 204 FPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF-QL 262
I++ ++L+ + DPGN+GT+LR+A+AF++ V + D ++ K +R+S GA F L
Sbjct: 90 --KINKTVILNNVSDPGNIGTILRSALAFEFDTVII--ENIDIYNPKIIRSSLGAIFSNL 145
Query: 263 PIVSGSWYHLEVLKD 277
I+S S E+LKD
Sbjct: 146 NIISTSNLE-EILKD 159
>gi|325288439|ref|YP_004264620.1| tRNA/rRNA methyltransferase SpoU [Syntrophobotulus glycolicus DSM
8271]
gi|324963840|gb|ADY54619.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophobotulus glycolicus DSM
8271]
Length = 273
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 90/196 (45%), Gaps = 34/196 (17%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSH----------GSALVVGTTPIREIYN--FNRSLQE 129
ITS N VKH + L Q+ + S G AL+ + I +I+ S E
Sbjct: 2 ITSVRNEQVKHIVSLHQTKGRKTSQQFFAEGRRFVGEALM-RSKRIEKIFYCPAKGSTWE 60
Query: 130 RTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVF 189
R + +L K+ +P VS VMK++S + + I A+ I +
Sbjct: 61 REKLEELILEAGKLRIP---------AEEVSEDVMKRISATEEPQGILAL----INQEEY 107
Query: 190 SIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
S D Q E D +L+LDGI+DPGNLGT+LR ++A V L G D ++
Sbjct: 108 SWDDIQIEPDTI--------LLILDGIRDPGNLGTILRASLAAGVKNVVLTRGTVDYYNP 159
Query: 250 KALRASRGACFQLPIV 265
K LR+S GA F + I+
Sbjct: 160 KVLRSSMGAVFSMCIL 175
>gi|399035059|ref|ZP_10732583.1| rRNA methylase [Rhizobium sp. CF122]
gi|398067157|gb|EJL58700.1| rRNA methylase [Rhizobium sp. CF122]
Length = 286
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 15/221 (6%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
HVK +TS +NP +K L + R G+ + G + + + +++ L
Sbjct: 15 HVKEVTSLANPIIKDIKALSDKKT-REQSGTFMAEGLKLVIDAIDLGWTIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ ++ TV +V++ S + I +I P V I ++ +
Sbjct: 67 VYAKAAKGKPLVEQMAAKTVASGGLVLE-----VSEKVISSITRRDNPQMVVGIFESRWK 121
Query: 198 ADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
A R P + LD ++DPGNLGT++RTA A GV L+ DPFS + +RA+
Sbjct: 122 A-LREIHPKRDETWIALDRVRDPGNLGTIIRTADAAGASGVILVGETTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
G+ F +P+ + V K + ++A H G+ + R +
Sbjct: 181 GSVFAVPVARATPEEFIVWKKHAGVSVVATHLAGSVDYRTI 221
>gi|390935295|ref|YP_006392800.1| tRNA/rRNA methyltransferase SpoU [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570796|gb|AFK87201.1| tRNA/rRNA methyltransferase (SpoU) [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 256
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 23/185 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N F+K+ KL YR+ V G + E + + LLL +
Sbjct: 3 ITSEKNEFIKNIKKL-SDKKYRYEKKLFFVEGKNSVFEAL-------KSGFEIVHLLLAE 54
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
V ++ V V V KK+S + + I +A++K+P +VN +
Sbjct: 55 DFNVDFQIE--RDKIVFVDEKVFKKISDTVAPQMI--MAVIKMPKW----EVNDIVKEGG 106
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+ ++LD +QDPGN+GT++R+A AF G+F + D ++ K LR++ G+ F
Sbjct: 107 FY-------VILDEVQDPGNVGTIIRSADAFNVDGIFTINNTVDIYNPKVLRSTMGSIFH 159
Query: 262 LPIVS 266
LP+V+
Sbjct: 160 LPVVN 164
>gi|294011050|ref|YP_003544510.1| RNA methyltransferase [Sphingobium japonicum UT26S]
gi|292674380|dbj|BAI95898.1| RNA methyltransferase [Sphingobium japonicum UT26S]
Length = 265
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 87/196 (44%), Gaps = 25/196 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+ IT SNP VK LR+ +R + G L G + E +E V + L
Sbjct: 2 AREITGFSNPLVKRVRSLREKK-FRKAEGLFLAEGLRILTEA-------REEGVLPEMLF 53
Query: 139 LLDK-----VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
E+ ++ + + ++ K+SG + +++ + ++ T + +D
Sbjct: 54 HAGSTHPLAAELIAAMEAAGGDVIETTPDILAKISGKDNPQAVVGVYRDRL-TPLAKLDR 112
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
+ + W +V ++DPGNLGT+LRT A GG+ L+ C DPFS +++R
Sbjct: 113 GKSDI----W-------IVAQSLRDPGNLGTILRTGDAVGAGGLILIDDCVDPFSVESVR 161
Query: 254 ASRGACFQLPIVSGSW 269
AS GA F I W
Sbjct: 162 ASMGALFTQSITQARW 177
>gi|407796056|ref|ZP_11143012.1| RNA methyltransferase [Salimicrobium sp. MJ3]
gi|407019410|gb|EKE32126.1| RNA methyltransferase [Salimicrobium sp. MJ3]
Length = 245
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 33/162 (20%)
Query: 102 YRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVP---EGLDNISTHTVR 158
YR +G LV G + E+ N + ++E L++ ++ VP EG +
Sbjct: 21 YRDQYGLFLVEGYHLVEEVVNSDWEVKE-------LIVQEESRVPFSYEGNKEL------ 67
Query: 159 VSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQD 218
VS VMK+++ ++ + I A+ V +KE + R L+LD IQD
Sbjct: 68 VSEAVMKEITETETPQGIMAV-------------VYKKEEGVETG----SRFLLLDTIQD 110
Query: 219 PGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
PGNLGTL+RTA A + V + G D F++K +RA++G+ F
Sbjct: 111 PGNLGTLIRTADAAGFDAVLIGRGSADRFNDKVVRATQGSMF 152
>gi|160878575|ref|YP_001557543.1| tRNA/rRNA methyltransferase SpoU [Clostridium phytofermentans ISDg]
gi|160427241|gb|ABX40804.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium phytofermentans
ISDg]
Length = 264
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 17/211 (8%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS+SN +K+ +KL++ S R+ + G E+ + R+ ++ +
Sbjct: 2 ITSSSNSQIKNLIKLQKQSKVRNELKVFVCEGKKMFEEVASQQRNQIKKVYLAESYYHQY 61
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ PE L + + S VMK+ S + + I +A++K P D
Sbjct: 62 TKQNPEYLKGLDFEVL--SDQVMKEASETITPQGI--LAIVKQPIYTLK--------DMT 109
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
S SI R+L+L+ I+DPGNLGT++RTA G+ L D F+ K +R++ GA F+
Sbjct: 110 SG-DSI-RLLLLEDIRDPGNLGTMVRTAEGVGMTGIVLSKDSVDMFNPKVIRSTMGAIFR 167
Query: 262 LPIVSGSWYH--LEVLKDEFQMKLLAGHAGG 290
+P ++ L +K+E ++ + A H G
Sbjct: 168 VPFFYAEDFYACLNQIKNE-EIAIYAAHLQG 197
>gi|71907387|ref|YP_284974.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
gi|71847008|gb|AAZ46504.1| tRNA/rRNA methyltransferase (SpoU) [Dechloromonas aromatica RCB]
Length = 255
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 79/186 (42%), Gaps = 20/186 (10%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N F K +L +S R G L+ G + L+ V
Sbjct: 1 MKLIQSRDNAFFKQLKRLAESGRERRKTGQTLLDGVHLVEAYEKAFGPLENLIVAESAAA 60
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ EG V ++ +M+ L V + + A+A M P +D+ +
Sbjct: 61 GGEIAAYLEG-----RQAVVLADALMRDLGLVDTPSGLLAVAPM--PQRTALVDLGKDA- 112
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++LDG+QDPGN+GTLLRTA A V + PGC +S K LRA +GA
Sbjct: 113 ------------VLLDGVQDPGNVGTLLRTAAASGVKQVLMAPGCASAWSPKVLRAGQGA 160
Query: 259 CFQLPI 264
F L I
Sbjct: 161 HFVLAI 166
>gi|91775460|ref|YP_545216.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT]
gi|91709447|gb|ABE49375.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacillus flagellatus KT]
Length = 260
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 89/192 (46%), Gaps = 31/192 (16%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVG---TTPIREIYNFNRSL---QERTVR 133
K+ITS N K KL ++ R H L+ G T E + + L + +
Sbjct: 4 KHITSRDNSLFKQLKKLADNARERRKHNETLLDGPHLLTAYIERFGMPKLLVTAEGESTN 63
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
LL +VP TV ++++ +LS V + I A+ +D+
Sbjct: 64 EVVGLLQVLADVP---------TVMFTTLMFAELSPVATPTGILAL-----------VDI 103
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
Q+ + F +L+L+ IQDPGNLG++LR+A A V+L GC D +S KALR
Sbjct: 104 PQQPVPEQPDF-----LLMLEDIQDPGNLGSMLRSAAAAGVEVVYLSLGCADAWSPKALR 158
Query: 254 ASRGACFQLPIV 265
+GA F LPIV
Sbjct: 159 GGQGAQFILPIV 170
>gi|296133375|ref|YP_003640622.1| TrmH family RNA methyltransferase [Thermincola potens JR]
gi|296031953|gb|ADG82721.1| RNA methyltransferase, TrmH family, group 3 [Thermincola potens JR]
Length = 268
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 18/188 (9%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
+ ITS N + + L Q YR G LV G ++E ++E +L
Sbjct: 3 ETITSAKNMRIMYLQSLLQKK-YRDREGKFLVEGLRFVQEALQSGADIEE------LILA 55
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+E +I + ++ + + + +E+ + IA + V +KE
Sbjct: 56 AGVLEKNPSFQSIIPDKIPITIIADQLFKKITDTETPQGIAAL----------VRKKEFR 105
Query: 200 CRSWFPSIH-RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
F + +L++D +QDPGNLGT++RTA A GV L+ G D ++ K LRA+ G+
Sbjct: 106 AEDLFVVANPFLLIIDKVQDPGNLGTIIRTADAAGVTGVALVKGTADLYNPKTLRATMGS 165
Query: 259 CFQLPIVS 266
F +PI++
Sbjct: 166 VFHVPIIN 173
>gi|251795157|ref|YP_003009888.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus sp. JDR-2]
gi|247542783|gb|ACS99801.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus sp. JDR-2]
Length = 264
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 25/195 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS N VK L YR G ++ G ++E + + ++Q C++
Sbjct: 6 LTSIQNERVKQWASLL-DKKYRDRTGLFIIEGVHLVQEAFKSSAAVQ-------CVVYNS 57
Query: 142 KVEVPEGLDNISTHT----VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ +P L+ ++ V+ ++ VM K +G + P VF++ + + +
Sbjct: 58 ERGIPHELEQLAREGGAEWVQATTQVMAKCTGTDT------------PPPVFAV-LEKLK 104
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
D + F + ++VLDG++DPGN+GT++R+A A V L G D ++ K +R++ G
Sbjct: 105 RDDTALFRNNSLVVVLDGVRDPGNVGTIIRSADAVGADAVVLGKGSVDLYNPKTVRSTMG 164
Query: 258 ACFQLPIVSGSWYHL 272
+ F LPI+ L
Sbjct: 165 SLFHLPIIEADLAEL 179
>gi|254372726|ref|ZP_04988215.1| rRNA methyltransferase [Francisella tularensis subsp. novicida
GA99-3549]
gi|385792701|ref|YP_005825677.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|151570453|gb|EDN36107.1| rRNA methyltransferase [Francisella novicida GA99-3549]
gi|328676847|gb|AEB27717.1| rRNA methyltransferase [Francisella cf. novicida Fx1]
Length = 250
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 38/53 (71%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
ILVLD IQDPGN+GT+LRTA+A V L+ G DPF+ KA+RA GA F L
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSL 157
>gi|254374182|ref|ZP_04989664.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548]
gi|151571902|gb|EDN37556.1| hypothetical protein FTDG_00345 [Francisella novicida GA99-3548]
Length = 250
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 38/53 (71%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
ILVLD IQDPGN+GT+LRTA+A V L+ G DPF+ KA+RA GA F L
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSL 157
>gi|347755892|ref|YP_004863456.1| rRNA methylase [Candidatus Chloracidobacterium thermophilum B]
gi|347588410|gb|AEP12940.1| rRNA methylase [Candidatus Chloracidobacterium thermophilum B]
Length = 289
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 88/195 (45%), Gaps = 28/195 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+ ITS SNPFVK + R+ RH V+ +R + +L V
Sbjct: 3 IDTITSRSNPFVKRFVTAREGRD-RH------VIFIEGVRLV---EEALHSHIVFEAIAY 52
Query: 139 LLDKVEVPEG---LDNISTHTVR---VSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID 192
+ P G L N+ + R ++ VM +S V++ I +AL + P S D
Sbjct: 53 SPRLCDTPRGAQLLANLQSQPCRGALLTEAVMAHISDVETPPGI--VALGRRPVSTIP-D 109
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
+ A L+ DGIQ PGNLG L+RTA A + G DPF KAL
Sbjct: 110 ITNCPAPL---------FLLADGIQSPGNLGALIRTAEAAGATAALVTVGTVDPFQPKAL 160
Query: 253 RASRGACFQLPIVSG 267
RAS G+ F+LPI++G
Sbjct: 161 RASAGSAFRLPIIAG 175
>gi|421557264|ref|ZP_16003169.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 80179]
gi|402334902|gb|EJU70177.1| tRNA/rRNA methyltransferase [Neisseria meningitidis 80179]
Length = 261
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 38/192 (19%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIR----------EIYNFNRSLQ 128
+K+I+S +N ++H +L +R + ++ G ++ +Y +
Sbjct: 1 MKHISSANNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGGRPVGVYIPEAKMP 60
Query: 129 ERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSV 188
VR +L PE D + + VS ++KK+S + ++ + +AL+ IP +
Sbjct: 61 SEEVRKLTAVL------PE--DGVFS----VSDGILKKISSLTCADDV--LALIDIPDA- 105
Query: 189 FSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFS 248
P+ +VLDG+QDPGN+GT+LR+A A G V L GC D +S
Sbjct: 106 -------------GALPAGGDCVVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGCADAWS 152
Query: 249 EKALRASRGACF 260
K LRA GA F
Sbjct: 153 PKVLRAGMGAHF 164
>gi|208779154|ref|ZP_03246500.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
gi|208744954|gb|EDZ91252.1| RNA methyltransferase, TrmH family [Francisella novicida FTG]
Length = 250
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 38/53 (71%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
ILVLD IQDPGN+GT+LRTA+A V L+ G DPF+ KA+RA GA F L
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSL 157
>gi|240849692|ref|YP_002971080.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
gi|240266815|gb|ACS50403.1| tRNA/rRNA methyltransferase [Bartonella grahamii as4aup]
Length = 289
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 29/195 (14%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK ITS SNP +K L Q + R+ G + G + + + ++Q
Sbjct: 13 RVKEITSLSNPIIKDLKALSQKKN-RNREGLFMAEGLKLVIDALDLGWTIQT-------- 63
Query: 138 LLLDKVEVPEG-LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
L+ K ++ ++N + V V+K S + +E++ P +V I QK
Sbjct: 64 LIFSKSKIGNAAIENTAARAVANGGFVIK-----ASQKVMESLTRRDNPQTVIGI-FKQK 117
Query: 197 EADCRSWFP------SIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
W P I + + LD ++DPGNLGT++RTA A GV L+ DPFS
Sbjct: 118 ------WHPFEMIKGQIKDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGETTDPFST 171
Query: 250 KALRASRGACFQLPI 264
+ +RA+ G+ F +P+
Sbjct: 172 ETVRATMGSIFSVPL 186
>gi|71662893|ref|XP_818446.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70883699|gb|EAN96595.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 559
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 26/191 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I + ++H ++LRQ+ YR S ++ G +RE++ + + LL+
Sbjct: 109 IDDERHELIQHFVRLRQNPKYRSSKQMMILGGREVLRELFEEGHTPRH-------LLIRG 161
Query: 142 KVEVPE--GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPT--SVFSIDVNQKE 197
EVP + T VRV + ++ V + + I IP + ++ N++
Sbjct: 162 SQEVPSWAKKKGVETEIVRVD----RHVAEVCAPGNDGYIGDFDIPPPPAKENLIANKQR 217
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
D RILVLD + DPG LGTLLR A F + + C D + + +R++RG
Sbjct: 218 FD---------RILVLDNVDDPGLLGTLLRAAAGFHYDAIITTNHCADIYDHRVVRSARG 268
Query: 258 ACFQ--LPIVS 266
A FQ +PI +
Sbjct: 269 AHFQKAVPIYT 279
>gi|315499963|ref|YP_004088766.1| tRNA/rRNA methyltransferase (spou) [Asticcacaulis excentricus CB
48]
gi|315417975|gb|ADU14615.1| tRNA/rRNA methyltransferase (SpoU) [Asticcacaulis excentricus CB
48]
Length = 264
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 205 PSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
P H + V L+ ++DPGNLGT++RTA A GGV L+ C DPFS + +RA+ G+ F LP
Sbjct: 115 PDSHEVWVALEQVRDPGNLGTIIRTADAAAIGGVILIGDCVDPFSVETVRATMGSIFALP 174
Query: 264 IV 265
IV
Sbjct: 175 IV 176
>gi|296331587|ref|ZP_06874056.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305675454|ref|YP_003867126.1| RNA methylase [Bacillus subtilis subsp. spizizenii str. W23]
gi|296151182|gb|EFG92062.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305413698|gb|ADM38817.1| putative RNA methylase [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 248
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 26/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VK KL + R + L+ G + E +++E +L
Sbjct: 1 MKQIESAKNQKVKDWKKL-HTKKERTKTNTFLIEGEHLVEEALKSPGTVKE-------IL 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P LD +S +S ++ ++ + I A+ M
Sbjct: 53 IKDETKIPSDLD-VSIQCYVLSEDAFSAVTETETPQQIAAVCHMP--------------- 96
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
S R+L++D +QDPGNLGT++RTA A V L G D ++ K LR+++G+
Sbjct: 97 --EEKLASPQRVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAYNGKTLRSAQGS 154
Query: 259 CFQLPIV 265
F +P+V
Sbjct: 155 HFHIPVV 161
>gi|187931908|ref|YP_001891893.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica
FSC147]
gi|254369390|ref|ZP_04985402.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
FSC022]
gi|157122340|gb|EDO66480.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
FSC022]
gi|187712817|gb|ACD31114.1| rRNA methyltransferase [Francisella tularensis subsp. mediasiatica
FSC147]
Length = 250
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 38/53 (71%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
ILVLD IQDPGN+GT+LRTA+A V L+ G DPF+ KA+RA GA F L
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSL 157
>gi|118497361|ref|YP_898411.1| rRNA methyltransferase [Francisella novicida U112]
gi|195536050|ref|ZP_03079057.1| RNA methyltransferase, TrmH family [Francisella novicida FTE]
gi|118423267|gb|ABK89657.1| rRNA methyltransferase [Francisella novicida U112]
gi|194372527|gb|EDX27238.1| RNA methyltransferase, TrmH family [Francisella tularensis subsp.
novicida FTE]
Length = 250
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 38/53 (71%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
ILVLD IQDPGN+GT+LRTA+A V L+ G DPF+ KA+RA GA F L
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSL 157
>gi|433448891|ref|ZP_20411756.1| rRNA methylase [Weissella ceti NC36]
gi|429539280|gb|ELA07317.1| rRNA methylase [Weissella ceti NC36]
Length = 256
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 92/189 (48%), Gaps = 20/189 (10%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ I S N VK KL Q+ R + + L+ G ++E N L+ + L
Sbjct: 1 METIKSAQNSRVKTWQKL-QTKKGRQTTQTYLLDGWHLVQEAIENNGRLRA-LIGTAEQL 58
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++P G+ +++ + KKLS + + + I A + +PTS + +
Sbjct: 59 SAHADDIPHGVP-----VFEITADIAKKLSDLVTPQGI--FAEVSLPTS----NREPQYI 107
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+W L LDGIQDPGN+GT++RTA A + GV G DP+S KA+RA +G+
Sbjct: 108 HEGAW-------LFLDGIQDPGNVGTMVRTADAAGFTGVVFGEGSVDPYSPKAVRAMQGS 160
Query: 259 CFQLPIVSG 267
F L + SG
Sbjct: 161 QFHLELASG 169
>gi|358064332|ref|ZP_09150908.1| hypothetical protein HMPREF9473_02971 [Clostridium hathewayi
WAL-18680]
gi|356697457|gb|EHI59040.1| hypothetical protein HMPREF9473_02971 [Clostridium hathewayi
WAL-18680]
Length = 262
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 37/194 (19%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIRE--------IYNFNRSLQERTVR 133
ITSTSN VK L + + YR G +V G E +Y + L + R
Sbjct: 2 ITSTSNAQVKQVAALTKKAKYRKETGLFVVEGGKMFSELPKERIHAVYATEKFLADSAHR 61
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
E+ +G+ + T VS V+K +S Q+ + I A+ V
Sbjct: 62 ----------EMMKGVRKVET----VSEDVLKAMSDTQTPQGILAL-------------V 94
Query: 194 NQKEADCRSWF--PSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
Q E P I++L+ IQDPGNLGT+LR G+ + G D ++ K
Sbjct: 95 KQYEYRVEDILKSPGPAHIMILETIQDPGNLGTILRAGEGAGVTGIIMNNGTADIYNPKV 154
Query: 252 LRASRGACFQLPIV 265
+R++ G+ +++P V
Sbjct: 155 IRSTMGSIYRVPFV 168
>gi|339007650|ref|ZP_08640224.1| putative RNA methyltransferase [Brevibacillus laterosporus LMG
15441]
gi|338774853|gb|EGP34382.1| putative RNA methyltransferase [Brevibacillus laterosporus LMG
15441]
Length = 275
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 25/195 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
V++I S NPFVK LK Q+ R + G L+ G + E N + L
Sbjct: 3 VEHIQSLQNPFVKR-LKELQTKKGREAAGRFLIEGEHLVEEALLSNMEV--------VTL 53
Query: 139 LLDK-----VEVPEGLDNIS--THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI 191
L D+ V L+ S + + VV+ KLS ++ + I A M+
Sbjct: 54 LFDEGKGLPATVMRALEAFSDPVKCISTTDVVLSKLSETKTPQGIVAEVKMR-------- 105
Query: 192 DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
N + + + IL+LD +QDPGN+GT++RTA A V + G D ++ K
Sbjct: 106 -SNDWDTEWKKVVKYDFLILILDELQDPGNVGTIMRTAEAAGVDAVLMGRGSVDLYNGKV 164
Query: 252 LRASRGACFQLPIVS 266
LR++ G+ F++P+ +
Sbjct: 165 LRSTMGSFFRMPVFT 179
>gi|354559947|ref|ZP_08979187.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium
metallireducens DSM 15288]
gi|353539461|gb|EHC08947.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium
metallireducens DSM 15288]
Length = 273
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 34/204 (16%)
Query: 73 FALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVG----------TTPIREIYN 122
F L ++ +TS N VKH + L + + R +G L+ G IR+IY
Sbjct: 4 FCLIGVIEMLTSLQNEHVKHVVALHKRKT-RKDYGEFLIEGWRFIEEAIRREAEIRQIYV 62
Query: 123 FNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALM 182
+E+ +L + ++P + V V++K+S + + I A+ +
Sbjct: 63 CPE--KEKGYWSSLYSVLRERKIP---------ILEVDERVLRKMSETEEPQGILAVVGL 111
Query: 183 KIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPG 242
K S+ E D ++ +L++DGIQDPGNLGT+LRTA+A V L G
Sbjct: 112 K------SLSWKDLEVDSKTV------LLIVDGIQDPGNLGTILRTALAAGVQQVCLTTG 159
Query: 243 CCDPFSEKALRASRGACFQLPIVS 266
D ++ K LR++ G F L +++
Sbjct: 160 TVDLYNPKVLRSTMGTVFSLQVLT 183
>gi|304405070|ref|ZP_07386730.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus
YK9]
gi|304345949|gb|EFM11783.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus curdlanolyticus
YK9]
Length = 264
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQ------ERTVRM 134
+TS N K L +R G LV G ++E ++ ER + +
Sbjct: 5 EVTSVQNARAKGWASLLDKK-HRDRSGQFLVEGIHLVKEALECGAQVETIVYDGERGLPL 63
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
+ L + PE L V S+VVM K +G S P VF++ V
Sbjct: 64 ELQQLPALIAFPELL-------VSASTVVMAKCTGTDS------------PPPVFAV-VA 103
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ + + F ++VLDG++DPGN+GT++R+A A V L GC D ++ K +R+
Sbjct: 104 KPVVEETALFREQSLVVVLDGVRDPGNVGTIIRSADAVGADAVVLGRGCVDLYNPKTVRS 163
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
+ G+ F LP++ L E ++L A
Sbjct: 164 TMGSLFHLPVIEADLLELLPKAQERGIRLAA 194
>gi|395783692|ref|ZP_10463541.1| hypothetical protein ME3_00197 [Bartonella melophagi K-2C]
gi|395425814|gb|EJF91974.1| hypothetical protein ME3_00197 [Bartonella melophagi K-2C]
Length = 278
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 89/196 (45%), Gaps = 31/196 (15%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK ITS SNP +K L Q + R+ + G + + N +Q
Sbjct: 8 QVKEITSLSNPIIKSLKALNQKKN-RNRDRVFMAEGLKLVIDALNLGWIIQT-------- 58
Query: 138 LLLDKVEVPEG-LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
L+L K +V ++NI+ TV V+K S + +E+I +V I Q
Sbjct: 59 LILSKNKVGNTVIENIAARTVAHGGFVIKA-----SQKVMESITRRDNSQTVVGIFKQQ- 112
Query: 197 EADCRSWFPSIHRI--------LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFS 248
W P I I + LD ++DPGNLGT++RTA A GV L+ DPFS
Sbjct: 113 ------WHP-IEMIKGLTQDVYIALDRVRDPGNLGTIIRTADAVGAKGVMLIGKTTDPFS 165
Query: 249 EKALRASRGACFQLPI 264
+ +RA+ G+ F +P+
Sbjct: 166 PETVRATMGSIFSVPL 181
>gi|387930067|ref|ZP_10132744.1| 23S rRNA methyltransferase [Bacillus methanolicus PB1]
gi|387586885|gb|EIJ79209.1| 23S rRNA methyltransferase [Bacillus methanolicus PB1]
Length = 250
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 25/201 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+I S NP VK KL + R G+ LV G + E L L+
Sbjct: 1 MKHIHSVQNPQVKQWKKLL-TKKERDKTGTFLVEGFHLVEEALKAGSVLN--------LI 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ +K E P + S V+ + LS ++ + + A+ + Q +
Sbjct: 52 INEKPEWPSRFNYGSIPVTMVTDEIFNTLSETETPQGVLAVCRQA--------KIGQDQI 103
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ R L++D +QDPGNLGT++RTA A V + G D ++ K LR+++G+
Sbjct: 104 KGK-------RFLLIDAVQDPGNLGTMIRTADAAGVDTVIVGNGSVDIYNSKVLRSAQGS 156
Query: 259 CFQLPIVSGSWYH-LEVLKDE 278
F LP+V G + +E L+ E
Sbjct: 157 HFHLPVVRGDLFEWMERLQQE 177
>gi|163846264|ref|YP_001634308.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aurantiacus J-10-fl]
gi|222524019|ref|YP_002568489.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus sp. Y-400-fl]
gi|163667553|gb|ABY33919.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aurantiacus
J-10-fl]
gi|222447898|gb|ACM52164.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus sp. Y-400-fl]
Length = 261
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 92/217 (42%), Gaps = 20/217 (9%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS +NP +K LRQ + R G L+ G P+ E L V + LL+
Sbjct: 3 ITSLANPTIKALRALRQRKA-RDEQGRYLIEGIRPVAEAIQCGAPLDMLVVAPE---LLN 58
Query: 142 KVEVPEGLDNIST---HTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
E +D + + VS+ V L+ + + + A+ + ++ N A
Sbjct: 59 SSFAHELIDTYAAGGGKILTVSAAVFSSLADKDNPQGLAAVGRIH-----YTPLPNLSPA 113
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
W +VL + DPGNLGT+LRTA + GV L+ DPF A+RAS GA
Sbjct: 114 PV-GW-------VVLVEVADPGNLGTILRTADGAGFSGVILVGATTDPFDPAAVRASMGA 165
Query: 259 CFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPR 295
F I SW L + ++ L+ G + R
Sbjct: 166 LFSQQIARTSWPDLLTWARQHRIALVGSSDRGASDYR 202
>gi|218288919|ref|ZP_03493170.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
LAA1]
gi|218241008|gb|EED08185.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
LAA1]
Length = 467
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
R+LVLD IQDPGN+GTL+R+A AF +G + G DP++ K +RAS G F++ ++G
Sbjct: 110 RVLVLDAIQDPGNVGTLVRSAEAFGFGEIVFGTGTADPYAPKVVRASMGGLFRVNAIAG 168
>gi|311069356|ref|YP_003974279.1| RNA methylase [Bacillus atrophaeus 1942]
gi|419819987|ref|ZP_14343604.1| putative RNA methylase [Bacillus atrophaeus C89]
gi|310869873|gb|ADP33348.1| putative RNA methylase [Bacillus atrophaeus 1942]
gi|388475840|gb|EIM12546.1| putative RNA methylase [Bacillus atrophaeus C89]
Length = 248
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 26/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VK KL + R + L+ G + E +++E +L
Sbjct: 1 MKRIDSAKNQKVKDWKKL-HTKKERTKTNTFLIEGEHLVEEALKTEGAVKE-------IL 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P LD +S H +S ++ ++ + I A+ M
Sbjct: 53 VKDEGKIPPDLD-MSIHCYILSEDAFSAVTETETPQQIAAVCRMP--------------- 96
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
S R+L++D +QDPGNLGT++RTA A V + G D ++ K LR+++G+
Sbjct: 97 --EDSLTSYKRLLLIDAVQDPGNLGTMIRTADAAGMDAVVIGDGTVDAYNGKTLRSAQGS 154
Query: 259 CFQLPIV 265
F +PIV
Sbjct: 155 HFHIPIV 161
>gi|341615611|ref|ZP_08702480.1| tRNA/rRNA methyltransferase [Citromicrobium sp. JLT1363]
Length = 270
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 17/192 (8%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTV--RMDCL 137
+ ITS SNP +K LR+ +R L G + + R + + R D
Sbjct: 4 REITSFSNPTIKALRSLREKK-HRQRERRFLAEGLRLLTDARESGRVPEVLVMAQRRDPH 62
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
L+D +E ++ + + ++ K++G + +++ A A + T + I+ +
Sbjct: 63 PLIDALE--SAVEQAGGDVIETTPDILSKITGKDNPQAV-AGAFAEWDTGLERIERDTAP 119
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
W LV ++DPGNLGT+LRT A GG+ L+ C DPF +A+RAS G
Sbjct: 120 I----W-------LVAQALRDPGNLGTMLRTGDAVGAGGLILIDDCADPFGVEAVRASMG 168
Query: 258 ACFQLPIVSGSW 269
A F + W
Sbjct: 169 AIFTQQLARARW 180
>gi|339483399|ref|YP_004695185.1| tRNA/rRNA methyltransferase SpoU [Nitrosomonas sp. Is79A3]
gi|338805544|gb|AEJ01786.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas sp. Is79A3]
Length = 274
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 89/185 (48%), Gaps = 16/185 (8%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL--L 139
ITS +P +K +KL SS YR G L+ G I +IY + V +
Sbjct: 4 ITSRDHPLIKQLIKLEGSSQYRKRAGLTLLDGAHLI-QIYCSVLGTPKNLVVGQSYFEDI 62
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+K + N VS+ +++ +S V++ I +AL+ IP +KE+D
Sbjct: 63 ENKGFLNRLFGNTRPKITIVSNALLRGISPVKTPTGI--LALIAIPEL-------KKESD 113
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
S+ +L+ IQDPGNLG++LR+A A V+L C D +S K LRAS GA
Sbjct: 114 HGKEIFSV----LLEAIQDPGNLGSILRSAAAANVRDVYLSKQCADAWSPKTLRASMGAH 169
Query: 260 FQLPI 264
F L I
Sbjct: 170 FFLRI 174
>gi|392958155|ref|ZP_10323671.1| 23S rRNA methyltransferase [Bacillus macauensis ZFHKF-1]
gi|391875813|gb|EIT84417.1| 23S rRNA methyltransferase [Bacillus macauensis ZFHKF-1]
Length = 254
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+ L+LDG+QDPGNLG+++RTA AF GV L G D ++ K LR+++G+ F L +V G
Sbjct: 108 KYLMLDGVQDPGNLGSIIRTADAFGLDGVILGQGTADLYNSKVLRSTQGSLFHLHVVKG 166
>gi|33861855|ref|NP_893416.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33640223|emb|CAE19758.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 246
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 66/131 (50%), Gaps = 28/131 (21%)
Query: 140 LDKVE-----VPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
LDK E + + L N+ + V S+V K GV AL++I +S+ + D N
Sbjct: 22 LDKNEDLYQKIDQSLINVVSEEVLASAVSTKNPDGVA--------ALVEI-SSIPNFDFN 72
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGV--FLLPGCCDPFSEKAL 252
E D ILVLD IQDPGN+G L RTA+A GV LL G P +K L
Sbjct: 73 NIEDDF---------ILVLDRIQDPGNMGNLFRTALA---AGVSKILLAGGAHPLGQKVL 120
Query: 253 RASRGACFQLP 263
RAS G+ F LP
Sbjct: 121 RASSGSVFHLP 131
>gi|424835783|ref|ZP_18260442.1| RNA methyltransferase, TrmH family [Clostridium sporogenes PA 3679]
gi|365977653|gb|EHN13751.1| RNA methyltransferase, TrmH family [Clostridium sporogenes PA 3679]
Length = 259
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 96/196 (48%), Gaps = 21/196 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S N +K KL++ YR + S +V G E N S+ + + L L+
Sbjct: 2 ISSKDNQLIKEVRKLKEKK-YRTQNKSFIVEGFRFFEEALKSNSSINKVFIEEKSLNKLE 60
Query: 142 KVEVPEGLDN-ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
++ ++N I T+ V S V+K +S ++ + I A+ + F + + +
Sbjct: 61 ELYKKYNINNDIETYVVNYS--VLKSISNTENPQGIVAV------INYFRTE----KLNL 108
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
++ F +++D +QDPGN+G ++RTA A G+ G D ++EK LR++ G+ F
Sbjct: 109 QNGF-----YILVDKVQDPGNMGNIIRTAHAAGALGIITTKGTVDIYNEKTLRSTMGSIF 163
Query: 261 QLPIVSGSWYHLEVLK 276
+ IV +LE +K
Sbjct: 164 YISIVEDE--NLEAVK 177
>gi|414564712|ref|YP_006043673.1| RNA methyltransferase TrmH family [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338847777|gb|AEJ25989.1| RNA methyltransferase TrmH family [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 245
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 200 CRSWFPSIH--RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
C+ P+ + + L+L+ IQDPGNLGT++RTA A K+ GVFL D +++K LR+ +G
Sbjct: 91 CQQALPTSYAGKYLILEDIQDPGNLGTIIRTADAAKFDGVFLSEKTADIYNQKTLRSMQG 150
Query: 258 ACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
+ F LPI Y + + ++ +LA
Sbjct: 151 SHFHLPIWRTDIYQISQAMQQQKIPVLA 178
>gi|414156053|ref|ZP_11412362.1| hypothetical protein HMPREF9186_00782 [Streptococcus sp. F0442]
gi|410872262|gb|EKS20206.1| hypothetical protein HMPREF9186_00782 [Streptococcus sp. F0442]
Length = 248
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 38/188 (20%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL-- 139
ITS SN +K+ KL Q ++ S L+ G + F +L+ + + +L
Sbjct: 4 ITSKSNNVIKNAKKLHQK---KYRTDSYLIEGW------HLFEEALENQAIIRQVFVLEA 54
Query: 140 -LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
LD+VE NI TV V+S ++ L+ ++ + I A L++ P
Sbjct: 55 YLDRVE------NIQNVTV-VTSEILSLLADSKTPQGIVAEILLEQPV------------ 95
Query: 199 DCRSWFPS-IH-RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
P +H R L L+ +QDPGN+GT++RTA A + GV + D FS K LR+ +
Sbjct: 96 -----LPDQLHGRYLYLEDVQDPGNVGTMIRTADAAGFDGVMISKASADLFSLKTLRSMQ 150
Query: 257 GACFQLPI 264
G+ F LPI
Sbjct: 151 GSHFHLPI 158
>gi|226941122|ref|YP_002796196.1| tRNA methyltransferase [Laribacter hongkongensis HLHK9]
gi|226716049|gb|ACO75187.1| Probable tRNA methyltransferase [Laribacter hongkongensis HLHK9]
Length = 257
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 82/186 (44%), Gaps = 22/186 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K +TS N +K ++L + R G ++ G + L + VR D L
Sbjct: 1 MKYLTSAQNDTLKSLVRLASRPAERRKSGLLVLEGLHLVDAWLARQPRLDQLFVREDAL- 59
Query: 139 LLDKVEVPEGLDNISTHT--VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
EV L +S T V + ++ K S + S + A+A + +P
Sbjct: 60 --AHPEVTALLARLSADTPVAVVPAALLGKASELASPAEVIALAPIPVPAPYHG------ 111
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+L+LD +QDPGNLGTLLRTA A V+L GC D +S KALRA
Sbjct: 112 -----------GSVLLLDDVQDPGNLGTLLRTAAAADVRRVYLSAGCADVWSGKALRAGM 160
Query: 257 GACFQL 262
GA F L
Sbjct: 161 GAQFAL 166
>gi|258512133|ref|YP_003185567.1| tRNA/rRNA methyltransferase SpoU [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478859|gb|ACV59178.1| tRNA/rRNA methyltransferase (SpoU) [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 261
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
R+LVLD IQDPGN GTL+R+A AF +G + G DP++ K +RAS G F++ ++G
Sbjct: 109 RVLVLDAIQDPGNAGTLVRSAEAFGFGEILFGTGTADPYAPKVVRASMGGLFRVHAIAG 167
>gi|256820057|ref|YP_003141336.1| tRNA/rRNA methyltransferase SpoU [Capnocytophaga ochracea DSM 7271]
gi|256581640|gb|ACU92775.1| tRNA/rRNA methyltransferase (SpoU) [Capnocytophaga ochracea DSM
7271]
Length = 267
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 24/194 (12%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
NITST NP +K + L + S R G +V G REI R E ++ LL
Sbjct: 2 NITSTQNPLIKKIVLLSEKSRERKKEGICVVEGA---REI----RLALEGGYTLETLLYQ 54
Query: 141 DKVEVPEGLDNISTHT------VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
++ E L + +HT + +S V +K+S S+E + A+ I
Sbjct: 55 PEIFAEEHLLKLLSHTAQRVNPIAISKEVYQKISYRSSTEGVIAL-----------IQTK 103
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ D ++ +LV + + PGN+G LLRTA A V + D ++ +R+
Sbjct: 104 KHSLDTLAFVTDSPLLLVAEAPEKPGNIGALLRTADAANIDAVIIANPKTDLYNPNIIRS 163
Query: 255 SRGACFQLPIVSGS 268
S G F +PI +GS
Sbjct: 164 SVGCVFTVPIATGS 177
>gi|20808116|ref|NP_623287.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
gi|20516703|gb|AAM24891.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
Length = 266
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGI 216
+R+++ + KK+S + + I AI M + +E D + ++ D +
Sbjct: 67 IRIANKLFKKISDTVTPQKIMAIVRMPV----------YREED---FIKEEGVYVIADNV 113
Query: 217 QDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLK 276
QDPGNLGT++RTA AF VF + D ++ K LRAS G+ F +P+++ + L LK
Sbjct: 114 QDPGNLGTIIRTADAFGADAVFTINNSVDIYNPKVLRASMGSIFHIPVIATANEVLYKLK 173
Query: 277 DEFQMKLLAGHAGGNEEPRQV 297
+ +K+ A H G + +V
Sbjct: 174 GK-GVKVFATHLKGEKFVHEV 193
>gi|401429606|ref|XP_003879285.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495535|emb|CBZ30840.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 607
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 27/188 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I ++ V+H +KL + YR + ++ G I E+ R L++
Sbjct: 117 IDDVNHALVQHFVKLSTNEKYRQARQMLVIGGRAMIEELCRAGH-------RPRHLMVER 169
Query: 142 KVEVPEGLDNISTHTVRVSSVVM--KKLSGVQSSESIEAIALMKIPTSVFS---IDVNQK 196
+PE L H R + VV+ + +S + S + +IPT I +Q+
Sbjct: 170 GKAIPELL-----HDRRKTDVVLVDRSVSAAVNPGSDGYVGDFEIPTPPMKEQLIANHQR 224
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
++R+LVLD ++DPG LGTLLRTA +++ + C D + + +RA+R
Sbjct: 225 ----------LNRVLVLDNVEDPGVLGTLLRTASGYQYDAIIATNHCADLYDHRVIRAAR 274
Query: 257 GACFQLPI 264
GA FQ +
Sbjct: 275 GAHFQTSV 282
>gi|334127680|ref|ZP_08501584.1| rRNA methylase [Centipeda periodontii DSM 2778]
gi|333388917|gb|EGK60085.1| rRNA methylase [Centipeda periodontii DSM 2778]
Length = 275
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 43/69 (62%), Gaps = 6/69 (8%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWY 270
+ LD +QDPGN+GT+LRT+ A GV LL GC D +S K +RA+ G+ F +P +
Sbjct: 128 IALDRVQDPGNVGTILRTSDAVGASGVILLRGCADVYSSKVVRATMGSLFHVP------F 181
Query: 271 HLEVLKDEF 279
LEV +E
Sbjct: 182 ALEVTAEEL 190
>gi|417926079|ref|ZP_12569490.1| RNA methyltransferase, TrmH family [Finegoldia magna
SY403409CC001050417]
gi|341590300|gb|EGS33544.1| RNA methyltransferase, TrmH family [Finegoldia magna
SY403409CC001050417]
Length = 243
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 35/195 (17%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN KH L + YR + ++ G +E N ++++ VR
Sbjct: 2 ITSTSNKIYKHVKSLYKKK-YRQKYNEFVIEGYKLYQEAIKSNLNIKQVIVR-------- 52
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
EG D + V S LS + + E I + + QK D +
Sbjct: 53 -----EGEDFLD-ECVYFDSKTFNSLSEMNNPEGIICVVSF----------IEQK--DVK 94
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
S +IL L+ I DPGNLGT++R+A AF + + L CD ++ K +R++ G+ F+
Sbjct: 95 S-----DQILFLENINDPGNLGTIIRSAEAFCYNKIVLSNNSCDIYNSKTIRSAMGSLFR 149
Query: 262 LPIVSGSWYHLEVLK 276
+ I S+ ++ VL+
Sbjct: 150 MNI---SYENINVLE 161
>gi|339326106|ref|YP_004685799.1| 23S rRNA methyltransferase [Cupriavidus necator N-1]
gi|338166263|gb|AEI77318.1| 23S rRNA methyltransferase [Cupriavidus necator N-1]
Length = 260
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K++TS N KH L S+ R G +L+ G ++ + R + CL+
Sbjct: 1 MKHVTSRDNALFKHLKALATSTHQRRKAGQSLLDG------VHLAQAYVAARGQPVTCLV 54
Query: 139 L---LDKVEVPEGLDNISTHTVRV-SSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
D EV L I V V + + ++SGV + I+ + +++ P +
Sbjct: 55 SERHYDHAEVAPVLALIEAERVVVLADALFTQISGVVNG--IDLMLVIETPVGHLPARIE 112
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
Q DC ++LDG+QD GN+G++LR+A A FL GC +S K LRA
Sbjct: 113 Q---DC----------IILDGVQDAGNVGSILRSAAAAGIQHAFLATGCAFAWSVKTLRA 159
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
GA F L IV LE L + LLA
Sbjct: 160 GMGANFHLNIVEHCT--LESLAPRLAVPLLA 188
>gi|333395919|ref|ZP_08477736.1| putative tRNA/rRNA methyltransferase [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
Length = 251
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 24/186 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS+ N +K KL + + R L+ G +RE N + ++ +L +
Sbjct: 4 ITSSKNDLIKTLRKLTRKKN-REEQQRYLLEGVHLVREALNAQQ-------QITMILATE 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ L N T + V LS +++ I A++ +P + +
Sbjct: 56 DFQAAAWLPN-DVPTYWLKPEVAHTLSATVTTQGI--FAVLPLP------EAKLPQTFTG 106
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
SW L+LDG+QDPGN+GT++RTA A GV L G D FS K LR+ +G+ F
Sbjct: 107 SW-------LLLDGVQDPGNIGTMVRTADAAGLTGVVLGEGSADLFSAKVLRSMQGSHFH 159
Query: 262 LPIVSG 267
+PI G
Sbjct: 160 IPIYQG 165
>gi|402570741|ref|YP_006620084.1| rRNA methylase [Desulfosporosinus meridiei DSM 13257]
gi|402251938|gb|AFQ42213.1| rRNA methylase [Desulfosporosinus meridiei DSM 13257]
Length = 264
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 89/195 (45%), Gaps = 32/195 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S N VK+ L Q R + ++ G + E N L + V +DC
Sbjct: 2 IESLQNEQVKYVASL-QRRKAREESKAYVIEGWRFVEEGVRRNAPLIKVYVCLDC----- 55
Query: 142 KVEVPEGLD--NISTHTVR-------VSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID 192
EGL+ I T V V V++K+S + + I A+ + + S +
Sbjct: 56 -----EGLEWRYIRTKLVERGIPYEEVDPRVLRKMSATEEPQGILAL-VRQTAYSWSDLH 109
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
++ K +LV+DGIQDPGNLGT+LRTA+A V L PG D ++ K L
Sbjct: 110 IDSKTV-----------VLVVDGIQDPGNLGTILRTALAAGVSNVCLTPGTVDLYNPKVL 158
Query: 253 RASRGACFQLPIVSG 267
R++ GA F L ++ G
Sbjct: 159 RSTMGAIFSLVLLPG 173
>gi|297617661|ref|YP_003702820.1| tRNA/rRNA methyltransferase SpoU [Syntrophothermus lipocalidus DSM
12680]
gi|297145498|gb|ADI02255.1| tRNA/rRNA methyltransferase (SpoU) [Syntrophothermus lipocalidus
DSM 12680]
Length = 265
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 84/183 (45%), Gaps = 19/183 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N +K+ +L + + R G LV G +RE ++ V D
Sbjct: 2 ITSRRNALIKYASRLLERKA-RDREGKFLVEGVRMVREAMKRPELVEYVLVACDV----- 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
E+ E + R+ ++K+++ ++ I +A+ + P D
Sbjct: 56 TGEMEEEFWRDAASVYRIRPELVKEITDTENPSGI--VAVCRKPVW-----------DWE 102
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
S S IL++D ++DPGNLGT+LRTA A VFLL G D ++ K +R+S GA F
Sbjct: 103 SIPESDGLILIVDNLRDPGNLGTILRTAWAAGVDAVFLLKGTVDMYNPKVIRSSMGAVFH 162
Query: 262 LPI 264
P+
Sbjct: 163 FPV 165
>gi|294945306|ref|XP_002784614.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
gi|239897799|gb|EER16410.1| RNA methyltransferase, putative [Perkinsus marinus ATCC 50983]
Length = 288
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGC-CDPFSEKALRASRGACFQLPIVSGS 268
+L+LDG+ D G LGT+LR+A A KW ++ LP DPF KA+R+S+GA + +P G
Sbjct: 79 LLILDGVIDAGQLGTILRSAFALKWHSIWFLPRTNADPFDHKAIRSSQGALWHMPFSYGK 138
Query: 269 WYHLEVLKDE 278
LE +E
Sbjct: 139 LDRLERFIEE 148
>gi|254479084|ref|ZP_05092437.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
12653]
gi|214034966|gb|EEB75687.1| RNA methyltransferase, TrmH family [Carboxydibrachium pacificum DSM
12653]
Length = 253
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGI 216
+R+++ + KK+S + + I AI M + +E D + ++ D +
Sbjct: 67 IRIANKLFKKISDTVTPQKIMAIVRMPV----------YREED---FIKEEGVYVIADNV 113
Query: 217 QDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLK 276
QDPGNLGT++RTA AF VF + D ++ K LRAS G+ F +P+++ + L LK
Sbjct: 114 QDPGNLGTIIRTADAFGVDAVFTINNSVDIYNPKVLRASMGSIFHIPVIATANEVLYKLK 173
Query: 277 DEFQMKLLAGHAGGNEEPRQV 297
+ +K+ A H G + +V
Sbjct: 174 GK-GVKVFATHLKGEKFVHEV 193
>gi|209558854|ref|YP_002285326.1| rRNA methylase [Streptococcus pyogenes NZ131]
gi|209540055|gb|ACI60631.1| Putative rRNA methylase [Streptococcus pyogenes NZ131]
Length = 245
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 15/116 (12%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGI 216
V VS V+K+L S + I +A ++IP F D K LVL+ +
Sbjct: 65 VIVSPQVLKELIDSPSPQGI--VAEVEIPKLAFPSDYKGK-------------YLVLEDV 109
Query: 217 QDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHL 272
QDPGNLGT++RTA A ++ GVFL D +++K LR+ +G+ F LPI + Y L
Sbjct: 110 QDPGNLGTIIRTADAARFDGVFLSEKSADIYNQKTLRSMQGSHFHLPIWRTNVYQL 165
>gi|261377823|ref|ZP_05982396.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685]
gi|269146125|gb|EEZ72543.1| RNA methyltransferase, TrmH family [Neisseria cinerea ATCC 14685]
Length = 261
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 93/193 (48%), Gaps = 28/193 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVR 133
+K I+S +N ++H +L +R + ++ G ++ R + E +
Sbjct: 1 MKQISSPNNEQIRHLQRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEAKMP 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ + L V +PE D I + VS ++KK+S + ++ I +AL+ IP D
Sbjct: 61 SEEVRKLTAV-LPE--DRIFS----VSDGILKKISSLSCADDI--LALIDIPLGRTLPD- 110
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
+ DC +VLDG+QDPGN+GT+LR+A A G V L G D +S K LR
Sbjct: 111 ---KGDC----------VVLDGVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLR 157
Query: 254 ASRGACFQLPIVS 266
A GA F L I S
Sbjct: 158 AGMGAHFLLDIYS 170
>gi|15895625|ref|NP_348974.1| rRNA methylase [Clostridium acetobutylicum ATCC 824]
gi|337737574|ref|YP_004637021.1| rRNA methylase [Clostridium acetobutylicum DSM 1731]
gi|384459084|ref|YP_005671504.1| RRNA methylase [Clostridium acetobutylicum EA 2018]
gi|15025369|gb|AAK80314.1|AE007736_4 RRNA methylase, YSGA B.subtilis ortholog [Clostridium
acetobutylicum ATCC 824]
gi|325509773|gb|ADZ21409.1| RRNA methylase [Clostridium acetobutylicum EA 2018]
gi|336292011|gb|AEI33145.1| rRNA methylase [Clostridium acetobutylicum DSM 1731]
Length = 261
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 24/187 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTV---RMDCLL 138
I S N +K KL + +R S +V G +RE + +Q V D +
Sbjct: 5 IKSKENSIIKEVKKLNEKK-HRDLKKSFIVEGLRFVREALESDFKIQYLFVSEKNYDKFI 63
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
L + E+ + ++V+ ++K + Q+ + I A+ V KE
Sbjct: 64 LKELKELIKK----EFQVIKVTESILKDICNTQTPQGIVAV-------------VQYKEV 106
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+W + +++D +QDPGN+GT++RTA A GV + G D ++ K LRA+ G+
Sbjct: 107 ---AWKLTKGFYMLVDKVQDPGNMGTIIRTANAAGALGVIITKGTVDIYNNKTLRATMGS 163
Query: 259 CFQLPIV 265
F++PI+
Sbjct: 164 IFKIPII 170
>gi|331002509|ref|ZP_08326027.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330410325|gb|EGG89759.1| hypothetical protein HMPREF0491_00889 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 261
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 28/190 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS+ N +K + L + SS R + ++ G RE+ + D +L
Sbjct: 2 ITSSGNKKIKELMALIKKSSARKKQNAYIIEGIRMFREL------------KKDEIL--- 46
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE---- 197
V V E D ++ + S + V S + E+++ K P V + V +KE
Sbjct: 47 DVFVSESFDALNKKLI---SEIYPGYE-VVSDKIFESVSDTKTPQGVMVV-VKRKEYTLE 101
Query: 198 --ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
R FP H +L+LD +QDPGNLGTL+R G+ + D ++ K +R++
Sbjct: 102 NILTVRGEFP--HNLLILDSLQDPGNLGTLVRAGEGAGITGIIMNESTVDIYNPKVIRST 159
Query: 256 RGACFQLPIV 265
G+ F++P +
Sbjct: 160 MGSVFRVPFI 169
>gi|347752960|ref|YP_004860525.1| tRNA/rRNA methyltransferase SpoU [Bacillus coagulans 36D1]
gi|347585478|gb|AEP01745.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 36D1]
Length = 251
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 27/190 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S NP VKH KL + R + L+ G + E +L+E V ++
Sbjct: 1 MKYIQSLQNPQVKHWKKL-TAKKEREKTFTYLLEGFHLVEE------ALKEEVVTE--II 51
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKI-PTSVFSIDVNQKE 197
+ + V++P + V+ + K L+ ++++ I A+ MK P+ +
Sbjct: 52 VEEGVDLPNRWNTEGVPVTTVTHEISKTLADTETTQGIFAVCRMKKQPSKIIG------- 104
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
R L++D +QDPGN GT++RTA A + V G DP+S K LRA++G
Sbjct: 105 ----------RRYLLIDAVQDPGNTGTMIRTADAAGFDAVIFGKGTADPYSPKVLRAAQG 154
Query: 258 ACFQLPIVSG 267
+ + ++ G
Sbjct: 155 SHLHVGLLKG 164
>gi|326803177|ref|YP_004320995.1| RNA methyltransferase, TrmH family [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651120|gb|AEA01303.1| RNA methyltransferase, TrmH family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 259
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 3/75 (4%)
Query: 188 VFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPF 247
VF++ ++A + P++ L+LDG+QDPGNLGTL+R+A AF + ++L G DP+
Sbjct: 84 VFAVVNRDQKASLKPASPAV---LLLDGVQDPGNLGTLIRSADAFNYQDIYLGKGTVDPY 140
Query: 248 SEKALRASRGACFQL 262
S K +R+ +G+ F +
Sbjct: 141 SPKVVRSMQGSQFHV 155
>gi|406908126|gb|EKD48732.1| RNA methyltransferase [uncultured bacterium]
Length = 251
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 101/220 (45%), Gaps = 29/220 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+ITS +N +KH L+Q R +H L G ++L E V + L
Sbjct: 1 MKSITSRTNETIKHLFSLQQKKQ-RTTHNQFLAEG-------LRACKTLIESKVTLIQLF 52
Query: 139 LLDKVEVPEGLDNISTHTVR-VSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ ++ E IS + VS +M+K+S S I I IP ++
Sbjct: 53 VTEQYSA-ESQKIISDEYITIVSESIMEKISSASSPSGI--IGQFTIP--------DEPS 101
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
AD S LVL I DPGN+GTL+RTA A + ++ G DP+S K +++S G
Sbjct: 102 ADLLS------SGLVLAQISDPGNMGTLIRTAAALNQKSIVIIDG-TDPYSPKVVQSSAG 154
Query: 258 ACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
+ I SW+ E+L+ + KL+A G + P ++
Sbjct: 155 TIGMVRIFQWSWH--ELLEYKGAQKLIALVVSGGKNPSEI 192
>gi|398311727|ref|ZP_10515201.1| RNA methylase [Bacillus mojavensis RO-H-1]
Length = 205
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 26/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VK KL + R + L+ G + E +++E +L
Sbjct: 1 MKQIESAKNQKVKDWKKL-HTKKERTKTNTYLIEGEHLVEEALKSPGAVKE-------IL 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ +P LD I +S ++ ++ + I A+ M
Sbjct: 53 VKDEANIPPNLD-IGIQCYVLSEDAFSAVTETETPQRIAAVCHMP--------------- 96
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
S R+L++D +QDPGNLGT++RTA A V L G D F+ K LR+++G+
Sbjct: 97 --EEKLASPKRVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGS 154
Query: 259 CFQLPIV 265
F +P+V
Sbjct: 155 HFHIPVV 161
>gi|254876975|ref|ZP_05249685.1| rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254842996|gb|EET21410.1| rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 252
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
ILVLD IQDPGN+GT+LRTA+A + L+ G DPF+ KA+RA GA F L
Sbjct: 106 ILVLDRIQDPGNIGTILRTAIAVGLTEIVLINGTVDPFNPKAIRAGMGAQFSL 158
>gi|167627889|ref|YP_001678389.1| rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167597890|gb|ABZ87888.1| rRNA methyltransferase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 250
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
ILVLD IQDPGN+GT+LRTA+A + L+ G DPF+ KA+RA GA F L
Sbjct: 104 ILVLDRIQDPGNIGTILRTAIAVGLTEIVLIDGTVDPFNPKAIRAGMGAQFSL 156
>gi|303233677|ref|ZP_07320331.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
gi|302495111|gb|EFL54863.1| RNA methyltransferase, TrmH family [Finegoldia magna BVS033A4]
Length = 243
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 35/195 (17%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN KH L + YR + ++ G +E N ++++ +R
Sbjct: 2 ITSTSNKIYKHVKSLYKKK-YRQKYNEFVIEGYKLYQEAIKSNINIKQVIIR-------- 52
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
EG +N V S LS + + E I + ++ D +
Sbjct: 53 -----EG-ENFLDECVYFDSKTFNSLSEMNNPEGIICVVSF------------IEKKDVK 94
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
S +IL L+ I DPGNLGT++R+A AF + + L CD ++ K +R++ G+ F+
Sbjct: 95 S-----DQILFLENINDPGNLGTIIRSAEAFGYNKIVLSNNSCDIYNSKTIRSAMGSLFR 149
Query: 262 LPIVSGSWYHLEVLK 276
+ I S+ ++ VL+
Sbjct: 150 MNI---SYENINVLE 161
>gi|86356050|ref|YP_467942.1| rRNA methylase [Rhizobium etli CFN 42]
gi|86280152|gb|ABC89215.1| rRNA methylase protein, TrmH family [Rhizobium etli CFN 42]
Length = 286
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 15/221 (6%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L S R G+ L G + + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTNKKS-REESGTFLAEGLKLVIDAIELGWTIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ ++ TV +V++ S + I AI P V I Q+
Sbjct: 67 VYAKAAKGKPLVEQMAARTVASGGLVLE-----VSEKVIAAITRRDNPQMVVGI-FEQRW 120
Query: 198 ADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
A + P V LD ++DPGNLGT++RTA A G+ L+ DPFS + +RA+
Sbjct: 121 APLKGIRPQEGETWVALDRVRDPGNLGTIIRTADAAGASGIILIGETTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
G+ F +P+ + + + ++A H G + R +
Sbjct: 181 GSVFAVPVARATPEEFLAWRKSAGVSIVATHLAGAVDYRTI 221
>gi|159900340|ref|YP_001546587.1| tRNA/rRNA methyltransferase SpoU [Herpetosiphon aurantiacus DSM
785]
gi|159893379|gb|ABX06459.1| tRNA/rRNA methyltransferase (SpoU) [Herpetosiphon aurantiacus DSM
785]
Length = 261
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 77/191 (40%), Gaps = 13/191 (6%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS NP +K LRQ R + G + G + E +++ V D L
Sbjct: 2 LTSKHNPAIKQIRALRQRRE-REATGLFFIEGIRNVTEAVQAQAPIEQLIVAPDLLRSQF 60
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++ E + + VS V LS + + A+ + + DV + C
Sbjct: 61 AQDLVEQQRQQAIPILEVSGEVFASLSSKDGPQGLAAVVRQQWASLA---DVRPDQGLC- 116
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
W + L+ I DPGNLGT+LRT A GV LL C DP+ RAS G F
Sbjct: 117 -W-------IALNAISDPGNLGTILRTGDAVGAAGVILLGDCTDPYDPATGRASMGTLFS 168
Query: 262 LPIVSGSWYHL 272
+V +W
Sbjct: 169 QRLVKATWAEF 179
>gi|402490582|ref|ZP_10837371.1| tRNA/rRNA methyltransferase SpoU [Rhizobium sp. CCGE 510]
gi|401810608|gb|EJT02981.1| tRNA/rRNA methyltransferase SpoU [Rhizobium sp. CCGE 510]
Length = 286
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 15/221 (6%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L S R G+ L G + + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTNKKS-REESGTFLAEGLKLVIDAIELGWTIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ ++ TV +V++ S + I +I P V I Q+
Sbjct: 67 VYAKAAKSKPLVEQMAARTVASGGLVLE-----VSEKVIASITRRDNPQMVVGI-FEQRW 120
Query: 198 ADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
R P V LD ++DPGNLGT++RTA A G+ L+ DPFS + +RA+
Sbjct: 121 KPLRDIRPRDGETWVALDRVRDPGNLGTIIRTADAAGASGIILIGETTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
G+ F +P+ + V + + ++A H G + R +
Sbjct: 181 GSVFAVPVARATPEEFVVWRKSAGVSVVATHLAGAVDYRTI 221
>gi|421871069|ref|ZP_16302691.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Brevibacillus laterosporus GI-9]
gi|372459696|emb|CCF12240.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Brevibacillus laterosporus GI-9]
Length = 275
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 25/195 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
V++I S NPFVK LK Q+ R + G L+ G + E N + L
Sbjct: 3 VEHIQSLQNPFVKR-LKELQTKKGREAAGRFLIEGEHLVEEALLSNMEV--------VTL 53
Query: 139 LLDK-----VEVPEGLDNIS--THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI 191
L D+ V L+ S + + VV+ KLS ++ + I A M+
Sbjct: 54 LFDEGKGLPATVMRALEAFSDPVKCISTTDVVLSKLSETKTPQGIVAEVKMR-------- 105
Query: 192 DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
N + + + IL+LD +QDPGN+GT++RTA A + + G D ++ K
Sbjct: 106 -SNDWDTEWKKMRKYDFLILILDELQDPGNVGTIMRTAEAAGVDAILMGRGSVDLYNGKV 164
Query: 252 LRASRGACFQLPIVS 266
LR++ G+ F++P+ +
Sbjct: 165 LRSTMGSFFRMPVFT 179
>gi|419704212|ref|ZP_14231762.1| tRNA/rRNA methyltransferase [Mycoplasma canis PG 14]
gi|384393000|gb|EIE39452.1| tRNA/rRNA methyltransferase [Mycoplasma canis PG 14]
Length = 241
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 99/200 (49%), Gaps = 39/200 (19%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS N VK+ KL Q YR+ LV G + E +L+ V
Sbjct: 3 LTSKQNSKVKYLKKL-QEKKYRNQENKFLVSGFHLVEE------ALKNNLVE-------- 47
Query: 142 KVEVPEGLDN-ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
E+ E D+ + ++ +VS ++K LS ++S + IAL K P + NQ
Sbjct: 48 --EIFESADSSVFLNSTKVSYDIIKWLS--ETSTPQKVIALCKKPKLI-----NQ----- 93
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
I+ ++ L+ +QDPGN+GT++R A +F + V + DPF++K +R+S+GA F
Sbjct: 94 -----DINHVIALNNLQDPGNVGTIIRLAKSFNFDTVIV--ENIDPFNDKVVRSSQGALF 146
Query: 261 QLPIVSGS--WYHLEVLKDE 278
+ I+ +L++LK++
Sbjct: 147 NINIIETKDITENLKILKEK 166
>gi|390957498|ref|YP_006421255.1| rRNA methylase [Terriglobus roseus DSM 18391]
gi|390412416|gb|AFL87920.1| rRNA methylase [Terriglobus roseus DSM 18391]
Length = 258
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
+L+ DGIQDPGNLGTL+R+A AF V L G DP++ K LRA+ GA F++P+
Sbjct: 110 LLMADGIQDPGNLGTLIRSAEAFGASAVALGDGTVDPWNGKCLRAAAGAAFRMPL 164
>gi|116624472|ref|YP_826628.1| tRNA/rRNA methyltransferase SpoU [Candidatus Solibacter usitatus
Ellin6076]
gi|116227634|gb|ABJ86343.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Solibacter usitatus
Ellin6076]
Length = 276
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 96/217 (44%), Gaps = 30/217 (13%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
+ ITS +NP +K +R++ S+ V TP + + +TV
Sbjct: 18 ETITSAANPLLK---DVRRAISHGALTEQGWCVAETPHLLEEALHSQCEVKTV------- 67
Query: 140 LDKVEVPEGLDNISTHT----VRVSSVVMKKLSGVQSSESIEA-IALMKIPTSVFSIDVN 194
+ LD S H +++ S+ +G+ +E+ + IAL++ P
Sbjct: 68 ---LASESALDGASAHLRSLPLKLVSLPDALFAGIAGTETTQGVIALVQPPAW------- 117
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
F ++VLDG+QDPGN GT++R A AF GV L G P++ K LRA
Sbjct: 118 ----KLEQLFQRPALVVVLDGLQDPGNAGTIVRAAEAFGATGVVFLKGAVSPYNPKTLRA 173
Query: 255 SRGACFQLPIVSGSWYHLEVLK-DEFQMKLLAGHAGG 290
S G+ F++P + G + + Q++L AG G
Sbjct: 174 SAGSLFRVPFLHGVDAAVACTALAQHQVELFAGVPAG 210
>gi|254974313|ref|ZP_05270785.1| putative RNA methylase [Clostridium difficile QCD-66c26]
gi|255091709|ref|ZP_05321187.1| putative RNA methylase [Clostridium difficile CIP 107932]
gi|255313437|ref|ZP_05355020.1| putative RNA methylase [Clostridium difficile QCD-76w55]
gi|255516125|ref|ZP_05383801.1| putative RNA methylase [Clostridium difficile QCD-97b34]
gi|255649221|ref|ZP_05396123.1| putative RNA methylase [Clostridium difficile QCD-37x79]
gi|260682395|ref|YP_003213680.1| RNA methylase [Clostridium difficile CD196]
gi|260685994|ref|YP_003217127.1| RNA methylase [Clostridium difficile R20291]
gi|384359975|ref|YP_006197827.1| RNA methylase [Clostridium difficile BI1]
gi|423090074|ref|ZP_17078414.1| RNA methyltransferase, TrmH family, group 3 [Clostridium difficile
70-100-2010]
gi|260208558|emb|CBA61230.1| putative RNA methylase [Clostridium difficile CD196]
gi|260212010|emb|CBE02553.1| putative RNA methylase [Clostridium difficile R20291]
gi|357557171|gb|EHJ38728.1| RNA methyltransferase, TrmH family, group 3 [Clostridium difficile
70-100-2010]
Length = 265
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 67/126 (53%), Gaps = 12/126 (9%)
Query: 143 VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRS 202
V++ E LD +T + ++ K+L ++++ I I ++ S +N+K+
Sbjct: 65 VKLLEDLDKKNTKIYKTTNKNFKELVDTENTQGI--IGVVSFKKKKLSESINKKD----- 117
Query: 203 WFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
+L+LD IQDPGN+GT++RTA + + L GC D ++ K +R++ G+ F +
Sbjct: 118 -----KFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDM 172
Query: 263 PIVSGS 268
I+ S
Sbjct: 173 NIIDAS 178
>gi|314936683|ref|ZP_07844030.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp.
hominis C80]
gi|313655302|gb|EFS19047.1| RNA methyltransferase, TrmH family [Staphylococcus hominis subsp.
hominis C80]
Length = 246
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
++L+LD IQDPGNLGTL+RTA A V + G D + +K +RAS+G+ F +PIV+
Sbjct: 106 QVLLLDRIQDPGNLGTLIRTADAAGIDMVVMEKGTADAYQDKVMRASQGSVFHIPIVT 163
>gi|421888302|ref|ZP_16319402.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
solanacearum K60-1]
gi|378966341|emb|CCF96150.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
solanacearum K60-1]
Length = 263
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 27/211 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+ITS N KH L S+ R G +++ G + + R+ + CL+
Sbjct: 1 MKHITSRDNAVFKHLKALSGSTQQRRRAGQSVLDGIHLVAAYLDAGRTPAQ------CLV 54
Query: 139 LLDKVEVPEGLDNIS----THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
+ PE ++ H + ++ + +L+ V + I+ +AL+ P +
Sbjct: 55 SERHLAHPEVAPLLARVDPQHVILLADSLFAQLTTVVNG--IDLMALIDTPEGHLP---H 109
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ E DC ++LDGIQD GN+G++LR A A VF+ GC +S K LRA
Sbjct: 110 RIEHDC----------VILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRA 159
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
+ GA F L IV + E + + LLA
Sbjct: 160 AMGAHFHLNIVEHCTF--ESMHARLHVPLLA 188
>gi|407978341|ref|ZP_11159173.1| SpoU rRNA methylase family protein [Bacillus sp. HYC-10]
gi|407415109|gb|EKF36722.1| SpoU rRNA methylase family protein [Bacillus sp. HYC-10]
Length = 247
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
RIL+LD +QDPGNLGTL+RTA A V L G D F+ K LR+++G+ F LPI+
Sbjct: 104 RILLLDAVQDPGNLGTLIRTADAAGLDAVILGDGTVDAFNGKTLRSAQGSHFHLPIL 160
>gi|319404923|emb|CBI78523.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp. AR
15-3]
Length = 282
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 29/194 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SNP +K LK R+ G + G + + +N ++ V + L
Sbjct: 9 VKEITSLSNPIIKD-LKALNKKKNRNREGIFMAEGLKLVIDAFNLGWTIHTLIVSRNSLR 67
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++N + +T+ V+K S + +E+I P +V I Q
Sbjct: 68 -------NSIIENTAANTIANGGSVIK-----VSQKVLESITHRDNPQTVVGIFKQQ--- 112
Query: 199 DCRSWFPSIHRIL--------VLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
W SI +I+ LD ++DPGNLGT++RTA A G+ L+ DPFS +
Sbjct: 113 ----WH-SIEKIIRRVDDVYIALDRVRDPGNLGTIIRTADAAGVKGIVLIGETTDPFSPE 167
Query: 251 ALRASRGACFQLPI 264
+RA+ G+ F +P+
Sbjct: 168 TVRATMGSIFSIPL 181
>gi|228476265|ref|ZP_04060967.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119]
gi|228269668|gb|EEK11170.1| SpoU rRNA Methylase family protein [Staphylococcus hominis SK119]
Length = 246
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
++L+LD IQDPGNLGTL+RTA A V + G D + +K +RAS+G+ F +PIV+
Sbjct: 106 QVLLLDRIQDPGNLGTLIRTADAAGIDMVVMEKGTADAYQDKVMRASQGSVFHIPIVT 163
>gi|110636002|ref|YP_676210.1| tRNA/rRNA methyltransferase SpoU [Chelativorans sp. BNC1]
gi|110286986|gb|ABG65045.1| tRNA/rRNA methyltransferase (SpoU) [Chelativorans sp. BNC1]
Length = 286
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 94/223 (42%), Gaps = 15/223 (6%)
Query: 76 PYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMD 135
P VK +TS SNP VK +K +R + + G + + + ++ RT+
Sbjct: 11 PGQVKEVTSLSNPLVKD-IKALTLKKFRDRERAFMAEGLKLVLDALDSGWAI--RTL--- 64
Query: 136 CLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
+ G N + +V L S + + AI P V + Q
Sbjct: 65 -------IYAKAGRGNAAVEKAAARTVAAGGLVLEVSEKVLSAITRRDNPQMVVGV-FEQ 116
Query: 196 KEADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ + P + V LD ++DPGNLGT++RT A GV L+ C DPFS + +RA
Sbjct: 117 RWLPLKEVTPKGEDLWVALDRVRDPGNLGTIIRTVDAVGARGVILVGECTDPFSVETVRA 176
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
+ G+ F +P+ ++ F ++ H G+ + R V
Sbjct: 177 TMGSVFSVPLARADEAAFLAWREHFAGLMVGTHLKGSVDYRNV 219
>gi|418620576|ref|ZP_13183380.1| RNA methyltransferase, TrmH family [Staphylococcus hominis VCU122]
gi|374822706|gb|EHR86726.1| RNA methyltransferase, TrmH family [Staphylococcus hominis VCU122]
Length = 246
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
++L+LD IQDPGNLGTL+RTA A V + G D + +K +RAS+G+ F +PIV+
Sbjct: 106 QVLLLDRIQDPGNLGTLIRTADAAGIDMVVMEKGTADAYQDKVMRASQGSVFHIPIVT 163
>gi|333370255|ref|ZP_08462269.1| TrmH family RNA methyltransferase [Desmospora sp. 8437]
gi|332978195|gb|EGK14927.1| TrmH family RNA methyltransferase [Desmospora sp. 8437]
Length = 263
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 19/187 (10%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
+ ITS N VK KL + R GS L+ G ++E ++ V + +
Sbjct: 2 EIHQITSARNEKVKRWRKL-STRKGREEFGSILIEGEKLLKEAARAGWQVRSVIVSDEGI 60
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
L+ + LD +S + + S+ +L Q+ + I A + +P N++
Sbjct: 61 RGLEDLSY---LDGVSVYALYPST--FAQLVDTQTPQGIAAEVV--VPE-------NKEG 106
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
R P +L+LD I+DPGNLGT+LRTA A G V+L G DPF+ K +R++ G
Sbjct: 107 YRIRGEEP----VLLLDAIRDPGNLGTILRTAEAAGVGDVWLGAGTVDPFNPKVVRSAMG 162
Query: 258 ACFQLPI 264
+ F+ I
Sbjct: 163 SLFRTRI 169
>gi|182416811|ref|ZP_02948201.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
gi|237668961|ref|ZP_04528945.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379273|gb|EDT76772.1| RNA methyltransferase, TrmH family [Clostridium butyricum 5521]
gi|237657309|gb|EEP54865.1| tRNA/rRNA methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 261
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 88/190 (46%), Gaps = 33/190 (17%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S N K KL++ + R ++ G ++E + + + ++CL++
Sbjct: 4 IESKDNNLFKETKKLKERKN-RTKSNKYIIEGFRLVQEAF-------KAGLNIECLIV-- 53
Query: 142 KVEVPEGLDNISTH-------TVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
+G D I ++ +++ +V + S+E + I + + +N
Sbjct: 54 ---TCDGKDKIDSYLREYINKDIKIYEMVNSLFKEIISTEKPQGIVAI--------VHMN 102
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+K D F L+ D +QDPGNLGT++RTA A K G+ L G D ++EK +R+
Sbjct: 103 EKTLDLNGSF-----YLLCDKVQDPGNLGTIIRTAHAVKADGIILTKGTVDIYNEKTIRS 157
Query: 255 SRGACFQLPI 264
+ G+ F +P+
Sbjct: 158 TMGSLFYVPV 167
>gi|386715026|ref|YP_006181349.1| RNA methyltransferase [Halobacillus halophilus DSM 2266]
gi|384074582|emb|CCG46075.1| RNA methyltransferase [Halobacillus halophilus DSM 2266]
Length = 244
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 30/187 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N VK KL + YR+ L+ G + E + + E + D
Sbjct: 2 ITSIQNAQVKEWKKLHKRK-YRNREQRFLIEGYHLVEEAMKSDWPVIEFIISEDA----- 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
VPE T VS V +S ++ + I A+ +K
Sbjct: 56 SFSVPE-----QTKCTTVSRQVFSAISETETPQGIAAVVGLK------------------ 92
Query: 202 SW-FPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
W + L++D +QDPGNLGTL+RTA A + + L G DP+++K +RA++G+ F
Sbjct: 93 EWEYSPAPLTLLVDAVQDPGNLGTLIRTADAAGFDHIVLGTGTVDPYNDKVIRATQGSIF 152
Query: 261 QLPIVSG 267
+P G
Sbjct: 153 HIPHFKG 159
>gi|308174562|ref|YP_003921267.1| RNA methylase [Bacillus amyloliquefaciens DSM 7]
gi|384165335|ref|YP_005546714.1| RNA methylase [Bacillus amyloliquefaciens LL3]
gi|384169478|ref|YP_005550856.1| RNA methylase [Bacillus amyloliquefaciens XH7]
gi|307607426|emb|CBI43797.1| putative RNA methylase [Bacillus amyloliquefaciens DSM 7]
gi|328912890|gb|AEB64486.1| putative RNA methylase [Bacillus amyloliquefaciens LL3]
gi|341828757|gb|AEK90008.1| putative RNA methylase [Bacillus amyloliquefaciens XH7]
Length = 257
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 42/59 (71%)
Query: 207 IHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+ R+L++D +QDPGNLGT++RTA A V L G DP+S K LR+++G+ F +PI+
Sbjct: 112 LKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQGSHFHIPIL 170
>gi|337755478|ref|YP_004647989.1| TrmH family RNA methyltransferase [Francisella sp. TX077308]
gi|336447083|gb|AEI36389.1| RNA methyltransferase, TrmH family [Francisella sp. TX077308]
Length = 252
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
ILVLD IQDPGN+GT+LRTA+A + L+ G DPF+ KA+RA GA F L
Sbjct: 106 ILVLDRIQDPGNIGTILRTAIAVGLTEIVLINGTVDPFNPKAIRAGMGAQFSL 158
>gi|390630619|ref|ZP_10258598.1| TrmH family RNA methyltransferase [Weissella confusa LBAE C39-2]
gi|390484176|emb|CCF30946.1| TrmH family RNA methyltransferase [Weissella confusa LBAE C39-2]
Length = 256
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 24/192 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N VK KL Q+ R + + L+ G ++E + L +
Sbjct: 1 METITSVQNGRVKSWQKL-QTKKGRQASKTYLLDGWHLVQEAIQHDGKLHA--------I 51
Query: 139 LLDKVEVPEGLDNI--STHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
+ ++ E D++ +++ + KKLS + + + I A + +PT+
Sbjct: 52 MATPEQLAEHQDDLPLGVPVFEITADIAKKLSDLVTPQGI--FAEVSLPTATREPQFIHD 109
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
A W L LD IQDPGN+GT++RTA A + GV G DP+S KALRA +
Sbjct: 110 GA----W-------LFLDAIQDPGNVGTMIRTADAAGFAGVVFGDGSVDPYSPKALRAMQ 158
Query: 257 GACFQLPIVSGS 268
G+ F + + +G+
Sbjct: 159 GSQFHMTLTTGN 170
>gi|298706974|emb|CBJ29793.1| tRNA/rRNA methyltransferase (SpoU) [Ectocarpus siliculosus]
Length = 354
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 205 PSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
P++ +L+ DGIQDPGNLGTL+RTA V L C D ++ K +RAS GA F+LP
Sbjct: 173 PTLQTVLICDGIQDPGNLGTLVRTAAGLGADAVVLTGSCVDYWAPKTVRASMGASFRLPS 232
Query: 265 VS-GSWYHLEVLKDEFQMKLLAGHAG 289
+ SW + L +++ A G
Sbjct: 233 LRLESWQEVVELMRARGIRMYAADGG 258
>gi|424775319|ref|ZP_18202313.1| RNA methyltransferase [Alcaligenes sp. HPC1271]
gi|422889337|gb|EKU31716.1| RNA methyltransferase [Alcaligenes sp. HPC1271]
Length = 260
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
++W R ++LD +QDPGN+GT+LRTA+A V+L PGC +S+K LR+++GA F
Sbjct: 106 QTWTAPTKRAILLDQVQDPGNVGTVLRTAVAVGLEAVYLTPGCASVWSQKVLRSAQGAHF 165
Query: 261 QLPI 264
+ I
Sbjct: 166 SIQI 169
>gi|420149492|ref|ZP_14656668.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
335 str. F0486]
gi|394753715|gb|EJF37222.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
335 str. F0486]
Length = 267
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 87/194 (44%), Gaps = 24/194 (12%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
NITST NP +K + L + S R G +V G REI R E ++ LL
Sbjct: 2 NITSTQNPLIKKIVLLSEKSRERKKEGICVVEGG---REI----RLALEGGYTLETLLYQ 54
Query: 141 DKVEVPEGLDNISTHT------VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
++ E L + +HT + +S V +K+S S+E + A+ I
Sbjct: 55 PEIFAEEHLLKLLSHTAQRVNPIAISKEVYQKISYRSSTEGVIAL-----------IQTK 103
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ D ++ +LV + + PGN+G LLRTA A V + D ++ +R+
Sbjct: 104 KHSLDTLAFVTDSPLLLVAEAPEKPGNIGALLRTADAANIDAVIIANPKTDLYNPNIIRS 163
Query: 255 SRGACFQLPIVSGS 268
S G F +PI +GS
Sbjct: 164 SVGCVFTVPIATGS 177
>gi|330719322|ref|ZP_08313922.1| rRNA methylase [Leuconostoc fallax KCTC 3537]
Length = 257
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 86/190 (45%), Gaps = 28/190 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYN----FNRSLQERTVRMDCL 137
I S NP VK KL R + + L+ G + E F+ + T + L
Sbjct: 4 ILSNQNPRVKAWAKLATKKG-RQENRTYLLDGWHLVEEAIKVKAKFHAVMATETQMAEHL 62
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+VP G+ +S V K ++G S + I A + +P F + K
Sbjct: 63 -----PDVPHGVP-----AFEISEEVAKHIAGTNSPQGI--FAEISLPEKTF----DPKY 106
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
+W L+LD IQDPGN+GTL+RTA A + GV L G D +S K +RA +G
Sbjct: 107 VHDGAW-------LLLDNIQDPGNVGTLVRTADAAGFKGVVLGAGTADAYSPKVVRAMQG 159
Query: 258 ACFQLPIVSG 267
+ F L +++G
Sbjct: 160 SQFHLEVLNG 169
>gi|255654742|ref|ZP_05400151.1| putative RNA methylase [Clostridium difficile QCD-23m63]
gi|296449487|ref|ZP_06891265.1| 23S rRNA methyltransferase [Clostridium difficile NAP08]
gi|296878190|ref|ZP_06902204.1| 23S rRNA methyltransferase [Clostridium difficile NAP07]
gi|296261678|gb|EFH08495.1| 23S rRNA methyltransferase [Clostridium difficile NAP08]
gi|296430806|gb|EFH16639.1| 23S rRNA methyltransferase [Clostridium difficile NAP07]
Length = 265
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 68/126 (53%), Gaps = 12/126 (9%)
Query: 143 VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRS 202
V++ E LD +T + ++ K+L ++++ I I ++ S +N+K+
Sbjct: 65 VKLLEDLDKKNTKIYKTTNKNFKELVDTENTQGI--IGVVSFKKKKLSESINKKD----- 117
Query: 203 WFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
+L+LD IQDPGN+GT++RTA + + L GC D ++ K +R++ G+ F +
Sbjct: 118 -----KFVLILDRIQDPGNMGTIIRTADSAGVEAIIALKGCVDIYNPKVIRSTMGSIFDM 172
Query: 263 PIVSGS 268
I++ S
Sbjct: 173 NIINAS 178
>gi|163757828|ref|ZP_02164917.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
DFL-43]
gi|162285330|gb|EDQ35612.1| putative trna/rrna methyltransferase protein [Hoeflea phototrophica
DFL-43]
Length = 287
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 92/194 (47%), Gaps = 19/194 (9%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK ITS SNP +K L +R GS L G + I ++ RT
Sbjct: 15 QVKEITSLSNPVIKDIRALSMKK-HRDETGSFLAEGLKLV--IDAIDQGWNIRT------ 65
Query: 138 LLLDKVE--VPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
L+ K + P+ ++ I+ TV +V++ S + + AI P +V ++ Q
Sbjct: 66 LIYAKAQRGKPQ-VEKIAALTVARGGLVLE-----VSEKVLTAITRRDNPQAVIAV-FEQ 118
Query: 196 KEADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
K + P + LD ++DPGNLGT++RTA A GV L+ DPFS + +RA
Sbjct: 119 KLTPLDAVAPKPDETWIALDRVRDPGNLGTIIRTADAAGASGVILIGDTVDPFSTETVRA 178
Query: 255 SRGACFQLPIVSGS 268
+ G+ F +P++ S
Sbjct: 179 TMGSIFAMPLLRAS 192
>gi|116490953|ref|YP_810497.1| rRNA methylase [Oenococcus oeni PSU-1]
gi|290890427|ref|ZP_06553502.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429]
gi|419758898|ref|ZP_14285210.1| rRNA methylase [Oenococcus oeni AWRIB304]
gi|419857804|ref|ZP_14380507.1| rRNA methylase [Oenococcus oeni AWRIB202]
gi|419859596|ref|ZP_14382250.1| rRNA methylase [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421185353|ref|ZP_15642764.1| rRNA methylase [Oenococcus oeni AWRIB318]
gi|421186403|ref|ZP_15643796.1| rRNA methylase [Oenococcus oeni AWRIB418]
gi|421188830|ref|ZP_15646162.1| rRNA methylase [Oenococcus oeni AWRIB419]
gi|421189619|ref|ZP_15646933.1| rRNA methylase [Oenococcus oeni AWRIB422]
gi|421190923|ref|ZP_15648207.1| rRNA methylase [Oenococcus oeni AWRIB548]
gi|421193556|ref|ZP_15650802.1| rRNA methylase [Oenococcus oeni AWRIB553]
gi|421195401|ref|ZP_15652609.1| rRNA methylase [Oenococcus oeni AWRIB568]
gi|421197514|ref|ZP_15654689.1| rRNA methylase [Oenococcus oeni AWRIB576]
gi|116091678|gb|ABJ56832.1| rRNA methylase [Oenococcus oeni PSU-1]
gi|290479823|gb|EFD88472.1| hypothetical protein AWRIB429_0892 [Oenococcus oeni AWRIB429]
gi|399904353|gb|EJN91809.1| rRNA methylase [Oenococcus oeni AWRIB304]
gi|399964163|gb|EJN98817.1| rRNA methylase [Oenococcus oeni AWRIB419]
gi|399964534|gb|EJN99175.1| rRNA methylase [Oenococcus oeni AWRIB318]
gi|399967356|gb|EJO01838.1| rRNA methylase [Oenococcus oeni AWRIB418]
gi|399971715|gb|EJO05954.1| rRNA methylase [Oenococcus oeni AWRIB553]
gi|399972709|gb|EJO06908.1| rRNA methylase [Oenococcus oeni AWRIB422]
gi|399973619|gb|EJO07784.1| rRNA methylase [Oenococcus oeni AWRIB548]
gi|399975123|gb|EJO09191.1| rRNA methylase [Oenococcus oeni AWRIB576]
gi|399975826|gb|EJO09861.1| rRNA methylase [Oenococcus oeni AWRIB568]
gi|410496613|gb|EKP88096.1| rRNA methylase [Oenococcus oeni DSM 20252 = AWRIB129]
gi|410497275|gb|EKP88750.1| rRNA methylase [Oenococcus oeni AWRIB202]
Length = 255
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 89/187 (47%), Gaps = 26/187 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTV---RMDCLL 138
ITS N VK L Q+ R G+ ++ G ++E N +Q +MD L
Sbjct: 4 ITSNQNSRVKIWTSL-QTLKGREKSGTYMLDGWHLVQEALNQAAPIQAVIATEEQMDQHL 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++VP+G+ +VS V + ++ + + I A +P + F + K
Sbjct: 63 ----IDVPQGVP-----AFQVSEEVARHIAKTNTPQGI--FAQTSLPNNSF----DPKYV 107
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
SW L+LD IQDPGN+GTL+RTA A + GV L DPF+ K +RA +G+
Sbjct: 108 HNGSW-------LLLDRIQDPGNVGTLIRTADAAGFSGVALSKESADPFNPKVVRAMQGS 160
Query: 259 CFQLPIV 265
F L +V
Sbjct: 161 QFHLKLV 167
>gi|34497485|ref|NP_901700.1| tRNA methyltransferase [Chromobacterium violaceum ATCC 12472]
gi|34103340|gb|AAQ59702.1| probable tRNA methyltransferase [Chromobacterium violaceum ATCC
12472]
Length = 266
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 83/192 (43%), Gaps = 21/192 (10%)
Query: 75 LPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRM 134
+PY K I+S N VK +L Q S R G ++ G L +
Sbjct: 1 MPYISKTISSPHNDEVKALARLVQHSRDRRKEGVMVLEGIHLAESCLQAGGELSRIYLNE 60
Query: 135 DCLLLLDKVEVPEGLDNI--STHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID 192
K EV LD++ + V + VM K++ + S+ + A++ P +
Sbjct: 61 AAA---GKPEVRRLLDSLPPGSTVVSLPEAVMSKVTALASAGELLALSPRPSPEAP---- 113
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
P+ ++L+ IQDPGNLGT+LRTA A VFL GC D FS K L
Sbjct: 114 ------------PAQAARVMLEDIQDPGNLGTILRTAAAAGVYDVFLSKGCVDVFSPKVL 161
Query: 253 RASRGACFQLPI 264
RA GA F L I
Sbjct: 162 RAGMGAHFALRI 173
>gi|304436951|ref|ZP_07396914.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304369902|gb|EFM23564.1| rRNA methylase [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 276
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
L LD +QDPGN+G +LRTA A GV LL GC D +S K +RA+ G+ F +P +SG
Sbjct: 127 LALDRVQDPGNVGMILRTADAAGAAGVILLRGCADVYSSKVVRATMGSLFYVPFISG 183
>gi|374602503|ref|ZP_09675495.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus dendritiformis
C454]
gi|374391928|gb|EHQ63258.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus dendritiformis
C454]
Length = 285
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQE------RTVR 133
+ ITS NP VK LR+ R G LV G ++E ++ R +
Sbjct: 6 ETITSVHNPRVKRWASLRERKG-RKQEGCFLVEGIHLVQEALASGAPVEAVLCDEARDIP 64
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKI--PTSVFSI 191
+ + D P + V+ +++KLS ++ + + A+ P ++F
Sbjct: 65 TELMPYADAPR-PAAAGGGQPEWIGVTDAIIRKLSETETPQPVIAVVRKPALEPGTLFGA 123
Query: 192 DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
D + ++ +DG+QDPGNLGT++R+A A GV L G D ++ K
Sbjct: 124 D--------------MPLVVAVDGVQDPGNLGTIIRSADAVGATGVVLGRGTVDVYNAKT 169
Query: 252 LRASRGACFQLPIVSGSWYHL 272
+R++ G+ F LP+V L
Sbjct: 170 VRSTMGSIFHLPVVEADLLSL 190
>gi|134302313|ref|YP_001122282.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|421752162|ref|ZP_16189196.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
AS_713]
gi|421754025|ref|ZP_16191010.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
831]
gi|421757745|ref|ZP_16194619.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
80700103]
gi|421759595|ref|ZP_16196425.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
70102010]
gi|424674915|ref|ZP_18111829.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
70001275]
gi|134050090|gb|ABO47161.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
WY96-3418]
gi|409085766|gb|EKM85897.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
831]
gi|409085950|gb|EKM86075.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
AS_713]
gi|409090580|gb|EKM90594.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
70102010]
gi|409092034|gb|EKM92017.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
80700103]
gi|417434589|gb|EKT89539.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
70001275]
Length = 250
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
ILV D IQDPGN+GT+LRTA+A V L+ G DPF+ KA+RA GA F L
Sbjct: 105 ILVFDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSL 157
>gi|319651786|ref|ZP_08005912.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
gi|317396605|gb|EFV77317.1| 23S rRNA methyltransferase [Bacillus sp. 2_A_57_CT2]
Length = 250
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 92/190 (48%), Gaps = 25/190 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+I S NP +K KL + R + LV G + E N+ + ++
Sbjct: 2 LKHIQSAKNPKIKEWKKLL-TKKERDKTETFLVEGFHLVEEALKANQIAE--------II 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ + ++P G D V+ ++ +L+ ++ + I A+ + P+S +E
Sbjct: 53 ISENKDMPPGWDYGDIPVTMVTEEIIGQLADTETPQGIFAVCSQE-PSS--------EEV 103
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ R L++D +QDPGNLGT++RTA A V + G D ++ K LR+++G+
Sbjct: 104 KGK-------RFLLIDAVQDPGNLGTMIRTADAAGIDAVIVGEGSVDAYNPKVLRSAQGS 156
Query: 259 CFQLPIVSGS 268
F LP++ G+
Sbjct: 157 HFHLPVLRGN 166
>gi|384160397|ref|YP_005542470.1| RNA methylase [Bacillus amyloliquefaciens TA208]
gi|328554485|gb|AEB24977.1| RNA methylase [Bacillus amyloliquefaciens TA208]
Length = 248
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 42/59 (71%)
Query: 207 IHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+ R+L++D +QDPGNLGT++RTA A V L G DP+S K LR+++G+ F +PI+
Sbjct: 103 LKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGDGTADPYSGKTLRSAQGSHFHIPIL 161
>gi|194246610|ref|YP_002004249.1| rRNA methylase [Candidatus Phytoplasma mali]
gi|193806967|emb|CAP18399.1| tRNA/rRNA methyltransferase [Candidatus Phytoplasma mali]
Length = 238
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 208 HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+++LVLD IQDP NLG LLR+A+AF + V L ++EK +RAS+GA F L G
Sbjct: 91 NKVLVLDDIQDPSNLGVLLRSALAFGFNQVLLSENSASFYNEKTIRASQGAIFYLYFQRG 150
Query: 268 SW-YHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQ 302
+ Y L+ K++ K+ + N++ + QL++
Sbjct: 151 NLEYLLQNFKNK-NYKIFSSLVRKNKKTLSIDQLNK 185
>gi|420146657|ref|ZP_14654049.1| Putative tRNA/rRNA methyltransferase [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398401034|gb|EJN54543.1| Putative tRNA/rRNA methyltransferase [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 251
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 24/186 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS+ N +K KL + + R L+ G +RE N + + +L +
Sbjct: 4 ITSSKNDLIKTLRKLTRKKN-REEQQRYLLEGVHLVREALNAQQPI-------TMILATE 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ L N T + V LS +++ I A++ +P + +
Sbjct: 56 DFQAAAWLPN-DVPTYWLKPEVAHTLSATVTTQGI--FAVLPLP------EAKLPQTFTG 106
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
SW L+LDG+QDPGN+GT++RTA A GV L G D FS K LR+ +G+ F
Sbjct: 107 SW-------LLLDGVQDPGNIGTMVRTADAAGLTGVVLGEGSADLFSAKVLRSMQGSHFH 159
Query: 262 LPIVSG 267
+PI G
Sbjct: 160 IPIYQG 165
>gi|384266417|ref|YP_005422124.1| TrmH family RNA methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387899455|ref|YP_006329751.1| RNA methyltransferase [Bacillus amyloliquefaciens Y2]
gi|380499770|emb|CCG50808.1| RNA methyltransferase, TrmH family [Bacillus amyloliquefaciens
subsp. plantarum YAU B9601-Y2]
gi|387173565|gb|AFJ63026.1| RNA methyltransferase [Bacillus amyloliquefaciens Y2]
Length = 257
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 28/190 (14%)
Query: 77 YHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDC 136
+ VK I S N VK KL + R + L+ G E +++E
Sbjct: 8 HKVKRIDSAKNQKVKDWKKL-HTKKERLKTNTFLIEGEHLAEEALKSKGTVKE------- 59
Query: 137 LLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI-DVNQ 195
+L+ D+ +P LD M V S ++ A+ + P + ++ +
Sbjct: 60 ILVNDESAIPADLD-------------MSIPCYVLSEDAFSAVTETETPQRIAAVCHMPD 106
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
K+ D + R+L++D +QDPGNLGT++RTA A V L G DP++ K LR++
Sbjct: 107 KQPD------QLKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSA 160
Query: 256 RGACFQLPIV 265
+G+ F +PI+
Sbjct: 161 QGSHFHIPIL 170
>gi|383763043|ref|YP_005442025.1| putative RNA methyltransferase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381383311|dbj|BAM00128.1| putative RNA methyltransferase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 265
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 91/203 (44%), Gaps = 34/203 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGT--------TPIREIYNFNRSLQERTVR 133
ITST+N VK KLR R++ LV G + R +Y F E
Sbjct: 6 ITSTANLRVKEARKLRTRKG-RYAASKVLVEGVRLVGDAWRSGTRPLYVFY--APELLTS 62
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ LL +++ EG + ++ S+ V LS + + I A+ + +P
Sbjct: 63 EEGQALLAQLK-EEGCECLAC-----STAVFMALSETTTPQGIAAV--LPLPR------- 107
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
W +L+LDG+ DPGN G LLR+A A GV PG DPF++K LR
Sbjct: 108 -------LEWPRHPSLLLILDGVGDPGNAGALLRSAEAAGCEGVIFAPGAVDPFNDKVLR 160
Query: 254 ASRGACFQLPI-VSGSWYHLEVL 275
A A F+LP+ V +W ++ L
Sbjct: 161 AGMSAHFRLPVRVCTAWDAVDAL 183
>gi|427780749|gb|JAA55826.1| Putative spou rrna methylase family protein [Rhipicephalus
pulchellus]
Length = 421
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG-SW 269
++LD ++DPGN+GTL+RTA A + L GC DP+ K LRA G+ F++PI SG +W
Sbjct: 181 VILDNVRDPGNMGTLIRTAAAAGCSQLLLSKGCVDPWELKVLRAGAGSHFRIPIYSGIAW 240
Query: 270 YHL 272
++
Sbjct: 241 EYM 243
>gi|194017287|ref|ZP_03055899.1| YsgA [Bacillus pumilus ATCC 7061]
gi|194011155|gb|EDW20725.1| YsgA [Bacillus pumilus ATCC 7061]
Length = 247
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 40/57 (70%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
R+L+LD +QDPGNLGTL+RTA A V L G D F+ K LR+++G+ F LPI+
Sbjct: 104 RLLLLDAVQDPGNLGTLIRTADAAGLDAVILGDGTVDAFNGKTLRSAQGSHFHLPIL 160
>gi|255305697|ref|ZP_05349869.1| putative RNA methylase [Clostridium difficile ATCC 43255]
Length = 265
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 67/126 (53%), Gaps = 12/126 (9%)
Query: 143 VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRS 202
V++ E LD +T + ++ K+L ++++ I I ++ S +N+K+
Sbjct: 65 VKLLEDLDKKNTKIYKTTNKNFKELVDTENTQGI--IGVVSFKKKKLSESINKKD----- 117
Query: 203 WFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
+L+LD IQDPGN+GT++RTA + + L GC D ++ K +R++ G+ F +
Sbjct: 118 -----KFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDV 172
Query: 263 PIVSGS 268
I+ S
Sbjct: 173 NIIDAS 178
>gi|149196456|ref|ZP_01873511.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
gi|149140717|gb|EDM29115.1| putative rRNA methylase [Lentisphaera araneosa HTCC2155]
Length = 265
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 14/189 (7%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
+I+S SNP +KH +KLR+ YR + ++ G I + +E + D L
Sbjct: 2 HISSLSNPRIKHIVKLRERR-YRDKEQTMIIEGFRSIYRAADNGVYPKELYICRDFFLGK 60
Query: 141 DKVEVPEGL-DNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
++ E+ + L D T V KK+S E + A+ T F V+ D
Sbjct: 61 NEDELIQKLQDEGGTQIFETEQNVFKKISYRDRPEGLLAL------TGYFRKQVD----D 110
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
P + ++V I+ PGNLGT++R+A G+ L C D F+ + AS G C
Sbjct: 111 LELSDPPL--LVVAQSIEKPGNLGTIIRSADGTGADGLILCDKCTDLFNPNVITASTGMC 168
Query: 260 FQLPIVSGS 268
F LPI +
Sbjct: 169 FSLPIAEAA 177
>gi|114566620|ref|YP_753774.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337555|gb|ABI68403.1| 23S rRNA methyltransferase [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 264
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 18/184 (9%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S N +K+ +L+Q S +R L+ G + E + L R + ++ L +
Sbjct: 4 ICSKDNKKIKYAARLKQKS-FRKQEACFLIEGKKMLEEALKHPKLL--RQIFIEAELASE 60
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
E+ + + V +MK +S ++ I +AL +IP+ +++E +
Sbjct: 61 YTELYQQHPEWECYVV--DKRLMKHISDTETPPGI--VALCQIPSW------SREEFLSQ 110
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+ F +L LD I DPGNLGT++R+ A G+ L P DPFS K +RAS G F
Sbjct: 111 NAF-----LLYLDRIADPGNLGTIIRSGWALGVDGILLSPESVDPFSPKVVRASMGGIFN 165
Query: 262 LPIV 265
+P++
Sbjct: 166 IPLL 169
>gi|423082178|ref|ZP_17070773.1| RNA methyltransferase, TrmH family [Clostridium difficile
002-P50-2011]
gi|423085801|ref|ZP_17074240.1| RNA methyltransferase, TrmH family [Clostridium difficile
050-P50-2011]
gi|357548923|gb|EHJ30777.1| RNA methyltransferase, TrmH family [Clostridium difficile
050-P50-2011]
gi|357549428|gb|EHJ31275.1| RNA methyltransferase, TrmH family [Clostridium difficile
002-P50-2011]
Length = 265
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 67/126 (53%), Gaps = 12/126 (9%)
Query: 143 VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRS 202
V++ E LD +T + ++ K+L ++++ I I ++ S +N+K+
Sbjct: 65 VKLLEDLDKKNTKIYKTTNKNFKELVDTENTQGI--IGVVSFKKKKLSESINKKD----- 117
Query: 203 WFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
+L+LD IQDPGN+GT++RTA + + L GC D ++ K +R++ G+ F +
Sbjct: 118 -----KFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDM 172
Query: 263 PIVSGS 268
++ S
Sbjct: 173 NVIDAS 178
>gi|295110727|emb|CBL24680.1| rRNA methylases [Ruminococcus obeum A2-162]
Length = 258
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 102/215 (47%), Gaps = 30/215 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N VK+ +KL Q + R G + G E + E+ + LL D
Sbjct: 2 ITSAQNTQVKNVIKLNQKAKARREQGLFIAEGRKMFLEAPD---DWIEKVYVAESLL--D 56
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
E+ + S V S V +++S Q+ + + + +++ P+ D+ ++EA
Sbjct: 57 DEEIMQKAGRFSWDAVENS--VFRQMSDTQTPQGV--LTVLRQPSYQLE-DLLKQEAPL- 110
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
++VL+ +QDPGN GT++RT GGVFL C D + K +RA+ G+ ++
Sbjct: 111 --------LMVLEDLQDPGNAGTIIRTGEGAGIGGVFLTKTCVDITNPKVIRATMGSIYR 162
Query: 262 LPIVSGSWYHLE---VLKDEFQ---MKLLAGHAGG 290
+P ++++E +LK + Q ++ A H G
Sbjct: 163 IP-----FFYVEDVVLLKQKLQNCGIRFFAAHLQG 192
>gi|219849653|ref|YP_002464086.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
gi|219543912|gb|ACL25650.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
9485]
Length = 261
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 78/192 (40%), Gaps = 16/192 (8%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS +NP +K LRQ + R G L+ G + E L+ V D L
Sbjct: 3 ITSLTNPTIKMLRALRQRKA-RDEQGRYLIEGIRLVGEAIQCGAPLEMIIVAPDLLTSSF 61
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMK-IPTSVFSIDVNQKEADC 200
E+ E + VS+ V+ L+ + + I + + P + VN
Sbjct: 62 AHELVEHYIAGGGRVLTVSAEVLGSLASKEHPQGIIGVGRARYTPLADLVAGVN------ 115
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
W + + DPGNLGT+LRTA + GV L+ DPF A+RAS GA F
Sbjct: 116 -GWVALVD-------VADPGNLGTILRTADGAGFSGVILIGSTVDPFDPAAVRASMGALF 167
Query: 261 QLPIVSGSWYHL 272
I W L
Sbjct: 168 SQQIARAGWDEL 179
>gi|144227486|gb|AAZ44231.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
Length = 251
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 32/203 (15%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K ITS +NP +K KL+ YR+ +V G I N L+ T + +
Sbjct: 3 IKKITSYNNPIIKEIGKLKLKK-YRNLWNKFVVEGEKDIESAINAGLVLRILTTKNNV-- 59
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
E ++ V VS +++KLS +S P+ V ++ ++K+
Sbjct: 60 --------EKYQKVNVDVVIVSQKILEKLSQHKS------------PSEVIAVCKSKKQR 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ + S R+++L+ IQ+PGNLGT++R +F G L+ D ++ K + AS+GA
Sbjct: 100 KIKDFLDS-KRLVILENIQNPGNLGTIIRNCYSF---GFDLVYSGVDLYNVKTISASKGA 155
Query: 259 CFQLPIVSGSWYHLEVLKDEFQM 281
F I Y L+ + D F+
Sbjct: 156 IFMANI-----YFLKNISDFFKF 173
>gi|54020405|ref|YP_115751.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 232]
gi|53987578|gb|AAV27779.1| rRNA methylase [Mycoplasma hyopneumoniae 232]
Length = 252
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 32/204 (15%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
+K ITS +NP +K KL+ YR+ +V G I N L+ T + +
Sbjct: 3 RIKEITSYNNPIIKEIGKLKLKK-YRNLWNKFVVEGEKDIESAINAGLVLRILTTKNNV- 60
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
E ++ V VS +++KLS +S P+ V ++ ++K+
Sbjct: 61 ---------EKYQKVNVDVVIVSQKILEKLSQHKS------------PSEVIAVCKSKKQ 99
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
+ + S R+++L+ IQ+PGNLGT++R +F G L+ D ++ K + AS+G
Sbjct: 100 RKIKDFLDS-KRLVILENIQNPGNLGTIIRNCYSF---GFDLVYSGVDLYNVKTISASKG 155
Query: 258 ACFQLPIVSGSWYHLEVLKDEFQM 281
A F I Y L+ + D F+
Sbjct: 156 AIFMANI-----YFLKNISDFFKF 174
>gi|406983589|gb|EKE04759.1| hypothetical protein ACD_20C00007G0020 [uncultured bacterium]
Length = 266
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N +K L+Q R+ G L+ G + E + N ++ + D
Sbjct: 1 MQEITSVQNEIIKEVYSLQQKKK-RNELGLFLIEGYKGVSEALSSNLQIESIFISQD--- 56
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
DK D I +V V+KK+S Q+ I A+A +Q +
Sbjct: 57 -FDKSLAGFAEDKI----YKVPEQVLKKISTTQTPPEIVAVA-------------HQLKF 98
Query: 199 DCRSWFPSIH-RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
+ F S + IL+L+ I+DPGNLGT++RTA A G+ L D ++ K +R+S
Sbjct: 99 SIKDLFISDNPLILLLENIKDPGNLGTIIRTAKAGNVSGIILTEETVDIYNPKTVRSSAA 158
Query: 258 ACFQLPIV 265
+++PI+
Sbjct: 159 NLWKIPII 166
>gi|392391867|ref|YP_006428469.1| rRNA methylase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390522945|gb|AFL98675.1| rRNA methylase [Desulfitobacterium dehalogenans ATCC 51507]
Length = 270
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 10/125 (8%)
Query: 144 EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS--IDVNQKEADCR 201
++ + L + + V V++K+S +S + I +A++K P + + +N D
Sbjct: 62 QLAKALKDNEVPIIEVDERVLRKMSDTESPQGI--LAVVKRPQWTWDDLLGMNHGPGD-- 117
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
I +L+LDG+QDPGN GT+LRTA+A V L G D ++ KALR++ GA F
Sbjct: 118 ----KIPMLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDVYNLKALRSTMGAIFS 173
Query: 262 LPIVS 266
L I++
Sbjct: 174 LKILT 178
>gi|113868019|ref|YP_726508.1| 23S rRNA methyltransferase [Ralstonia eutropha H16]
gi|113526795|emb|CAJ93140.1| 23S rRNA methyltransferase [Ralstonia eutropha H16]
Length = 260
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K++TS N KH L S+ R G +L+ G ++ + R + C++
Sbjct: 1 MKHVTSRDNALFKHLKTLATSTHQRRKAGQSLLDG------VHLAQAYVAARGQPVTCVV 54
Query: 139 L---LDKVEVPEGLDNISTHTVRV-SSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
D EV L I V V + + ++SGV + I+ + +++ P +
Sbjct: 55 SERHYDHAEVAPVLALIEAERVVVLADALFTQISGVVNG--IDLMLVIETPVGHLPARIE 112
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
Q DC ++LDG+QD GN+G++LR+A A FL GC +S K LRA
Sbjct: 113 Q---DC----------IILDGVQDAGNVGSILRSAAAAGIQHAFLATGCAFAWSVKTLRA 159
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
GA F L IV LE L + LLA
Sbjct: 160 GMGANFHLNIVEHCT--LESLAPRLAVPLLA 188
>gi|291551180|emb|CBL27442.1| rRNA methylase, putative, group 3 [Ruminococcus torques L2-14]
Length = 262
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 20/186 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREI--YNFNRSLQERTVRMDCLLL 139
ITSTSN +K KL++ S R G LV G EI + +
Sbjct: 2 ITSTSNAQIKELAKLQKKSRLRDEKGIFLVEGPRMTEEIPAERIEKVYASESFAKKNKEF 61
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+K++ P L ++ V +S ++ + I AI T + V ++A
Sbjct: 62 SEKLQAPVEL---------LTDTVFAYVSDTKTPQGILAIVKRLNYTMNDLMQVKNQKA- 111
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
++VLD +QDPGNLGT+ RTA A G+ L C D ++ K +R++ GA
Sbjct: 112 --------PHLVVLDNLQDPGNLGTIFRTAEAAGVTGILLSKDCVDVYNPKVIRSTMGAV 163
Query: 260 FQLPIV 265
F++P +
Sbjct: 164 FRMPFL 169
>gi|374578843|ref|ZP_09651937.1| rRNA methylase [Desulfosporosinus youngiae DSM 17734]
gi|374414925|gb|EHQ87360.1| rRNA methylase [Desulfosporosinus youngiae DSM 17734]
Length = 264
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 42/58 (72%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+L+LDGIQDPGNLGT+LRTA+A V L PG D ++ K LR++ GA F L ++SG
Sbjct: 116 MLILDGIQDPGNLGTILRTALASGVQYVCLTPGTVDLYNPKVLRSTMGAVFSLVLLSG 173
>gi|385334316|ref|YP_005888263.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
gi|348161059|gb|ADQ90375.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae 168]
Length = 252
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 32/203 (15%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K ITS +NP +K KL+ YR+ +V G I N L+ T + +
Sbjct: 4 IKEITSYNNPIIKEIGKLKLKK-YRNLWNKFVVEGEKDIESAINAGLVLRILTTKNNV-- 60
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
E ++ V VS +++KLS +S P+ V ++ ++K+
Sbjct: 61 --------EKYQKVNVDVVIVSQKILEKLSQHKS------------PSEVIAVCKSKKQR 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ + S R+++L+ IQ+PGNLGT++R +F G L+ D ++ K + AS+GA
Sbjct: 101 KIKDFLDS-KRLVILENIQNPGNLGTIIRNCYSF---GFDLVYSGVDLYNVKTISASKGA 156
Query: 259 CFQLPIVSGSWYHLEVLKDEFQM 281
F I Y L+ + D F+
Sbjct: 157 IFMANI-----YFLKNISDFFKF 174
>gi|144575297|gb|AAZ53518.2| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae
7448]
Length = 251
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 32/203 (15%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K ITS +NP +K KL+ YR+ +V G I N L+ T + +
Sbjct: 3 IKEITSYNNPIIKEIGKLKLKK-YRNLWNKFVVEGEKDIESAINAGLVLRILTTKNNV-- 59
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
E ++ V VS +++KLS +S P+ V ++ ++K+
Sbjct: 60 --------EKYQKVNVDVVIVSQKILEKLSQHKS------------PSEVIAVCKSKKQR 99
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ + S R+++L+ IQ+PGNLGT++R +F G L+ D ++ K + AS+GA
Sbjct: 100 KIKDFLDS-KRLVILENIQNPGNLGTIIRNCYSF---GFDLVYSGVDLYNVKTISASKGA 155
Query: 259 CFQLPIVSGSWYHLEVLKDEFQM 281
F I Y L+ + D F+
Sbjct: 156 IFMANI-----YFLKNISDFFKF 173
>gi|385799727|ref|YP_005836131.1| tRNA/rRNA methyltransferase SpoU [Halanaerobium praevalens DSM
2228]
gi|309389091|gb|ADO76971.1| tRNA/rRNA methyltransferase (SpoU) [Halanaerobium praevalens DSM
2228]
Length = 269
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 185 PTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCC 244
P + ++ V + + ++ +IL+LD IQDPGN+GT++RTA+A + G+ L G
Sbjct: 93 PQGILAV-VEESVFKGQDFYNKADKILLLDRIQDPGNMGTIIRTAVAAGFDGIIALKGSV 151
Query: 245 DPFSEKALRASRGACFQLPI---VSGSWYHLEVLKDEFQMKLLAGHAGGNE 292
D +++K +R++ G F + I +S + +E+ + +LLA E
Sbjct: 152 DIYNQKVIRSTMGGIFSIAIRQKLSQQEFLVELKEKALDHELLAADIEAEE 202
>gi|405377538|ref|ZP_11031479.1| rRNA methylase [Rhizobium sp. CF142]
gi|397325975|gb|EJJ30299.1| rRNA methylase [Rhizobium sp. CF142]
Length = 285
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 98/229 (42%), Gaps = 31/229 (13%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L S R G+ + G + + +++ L
Sbjct: 14 QVKEVTSLANPIIKDIKALTNKKS-REESGTFMAEGLKLVIDAIELGWTIR-------TL 65
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI------ 191
+ + ++ ++ TV +V++ + + I +I P V I
Sbjct: 66 VYAKAAKGKPLVEQMAAKTVASGGLVLE-----VNEKVISSITRRDNPQMVVGIFETRWT 120
Query: 192 ---DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFS 248
D+ K D +W + LD ++DPGNLGT++RTA A GV L+ DPFS
Sbjct: 121 KLRDIRPK--DGETW-------VALDRVRDPGNLGTIIRTADAAGASGVILIGETTDPFS 171
Query: 249 EKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
+ +RA+ G+ F +P+ + K + ++A H G+ + R +
Sbjct: 172 LETVRATMGSVFAVPVAHATAEEFTAWKKHAGVSVVATHLAGSVDYRTI 220
>gi|251781823|ref|YP_002996125.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|408401091|ref|YP_006859054.1| 23S rRNA methyl transferase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|410494137|ref|YP_006903983.1| RNA methyltransferase, TrmH family [Streptococcus dysgalactiae
subsp. equisimilis AC-2713]
gi|417927235|ref|ZP_12570623.1| RNA methyltransferase, TrmH family [Streptococcus dysgalactiae
subsp. equisimilis SK1250]
gi|242390452|dbj|BAH80911.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|340765109|gb|EGR87635.1| RNA methyltransferase, TrmH family [Streptococcus dysgalactiae
subsp. equisimilis SK1250]
gi|407967319|dbj|BAM60557.1| 23S rRNA methyl transferase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|410439297|emb|CCI61925.1| K03437 RNA methyltransferase, TrmH family [Streptococcus
dysgalactiae subsp. equisimilis AC-2713]
Length = 245
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 59/108 (54%), Gaps = 15/108 (13%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGI 216
V VS+ V+K+L+ S + I IA + +P F D K L+L+ +
Sbjct: 65 VLVSADVLKELTDSPSPQGI--IAEVDMPQLAFPTDYQGK-------------YLILEDV 109
Query: 217 QDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
QDPGNLGT++RTA A + GVFL D ++ K LR+ +G+ F LPI
Sbjct: 110 QDPGNLGTIIRTADAAGFDGVFLSEKSADVYNSKTLRSMQGSHFHLPI 157
>gi|126698277|ref|YP_001087174.1| tRNA/rRNA methyltransferase SpoU [Clostridium difficile 630]
gi|115249714|emb|CAJ67531.1| putative tRNA/rRNA methyltransferase, SpoU [Clostridium difficile
630]
Length = 226
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 67/126 (53%), Gaps = 12/126 (9%)
Query: 143 VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRS 202
V++ E LD +T + ++ K+L ++++ I I ++ S +N+K+
Sbjct: 26 VKLLEDLDKKNTKIYKTTNKNFKELVDTENTQGI--IGVVSFKKKKLSESINKKD----- 78
Query: 203 WFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
+L+LD IQDPGN+GT++RTA + + L GC D ++ K +R++ G+ F +
Sbjct: 79 -----KFVLILDRIQDPGNMGTIIRTADSAGVDAIIALKGCVDIYNPKVIRSTMGSIFDM 133
Query: 263 PIVSGS 268
I+ S
Sbjct: 134 NIIDAS 139
>gi|333896858|ref|YP_004470732.1| TrmH family RNA methyltransferase [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333112123|gb|AEF17060.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 256
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 109/253 (43%), Gaps = 47/253 (18%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N F+K KL YR+ V G + E + + LL+ +
Sbjct: 3 ITSEKNEFIKDVKKL-ADKKYRYEKRLFFVEGKNSVFEAL-------KSGFEIVHLLVAE 54
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ ++ V V V KK+S + + I +A++K+P +VN +
Sbjct: 55 DFNIDFQIE--KEKIVFVDEKVFKKISDTVAPQMI--MAVVKMPKW----EVNDIVKEGG 106
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+ ++LD +QDPGN+GT++R+A AF GVF + D ++ K LR++ G+ F
Sbjct: 107 FY-------VILDEVQDPGNVGTIIRSADAFNVDGVFAINNTVDIYNPKVLRSTMGSIFH 159
Query: 262 LPIVS----GSWYHLEVLKD-----------------EFQMKLLAGHAGGNEEPRQVLQL 300
LP+V+ +H VLK +F + A GN E R V +L
Sbjct: 160 LPVVNDVEPSRLFH--VLKKHGIRILSTSLKAEKYIYDFDISKNAALIFGN-ESRGVNRL 216
Query: 301 SQELADSFAGVPL 313
E DS +P+
Sbjct: 217 LDEFIDSSFKIPM 229
>gi|452825810|gb|EME32805.1| RNA methyltransferase, TrmH family [Galdieria sulphuraria]
Length = 316
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS-GS 268
+L+ D IQDPGNLG+LLR+A A GV + P DP+S K LR GA F +PIV+
Sbjct: 164 VLICDKIQDPGNLGSLLRSAAAVGVDGVIVSPESTDPYSVKVLRGGMGAQFAIPIVTCED 223
Query: 269 WYH-LEVLKD 277
W L+V KD
Sbjct: 224 WKRFLQVAKD 233
>gi|430001958|emb|CCF17738.1| putative RRNA methylase protein, TrmH family [Rhizobium sp.]
Length = 286
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 21/224 (9%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS SNP VK +K + R G+ + G + + +++
Sbjct: 15 QVKEVTSLSNPIVKD-IKALSNKKDREQSGTFMAEGLKLVIDALELGWTIR--------- 64
Query: 138 LLLDKVEVPEG---LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
+L + +G ++ ++ T+ +V++ S + + +I P V I
Sbjct: 65 -ILAYAKAAKGKPLVEQVAARTIAKGGLVLE-----VSEKVLSSITRRDNPQMVVGI-FE 117
Query: 195 QKEADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
Q+ PS V LD ++DPGNLGT++RTA A GV L+ C DPFS + +R
Sbjct: 118 QRWTPLDDLRPSQGVTYVALDRVRDPGNLGTIIRTADAAGASGVILVGECTDPFSLETVR 177
Query: 254 ASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
A+ G+ F +P+ + + +++A H G + R V
Sbjct: 178 ATMGSVFAVPLARATTEEFFAWQKRSGAQVVATHLAGAVDYRTV 221
>gi|387886644|ref|YP_006316943.1| rRNA methyltransferase [Francisella noatunensis subsp. orientalis
str. Toba 04]
gi|386871460|gb|AFJ43467.1| rRNA methyltransferase [Francisella noatunensis subsp. orientalis
str. Toba 04]
Length = 252
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 37/52 (71%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
LVLD IQDPGN+GT+LRTA+A + L+ G DPF+ KA+RA GA F L
Sbjct: 107 LVLDRIQDPGNIGTILRTAIAVGLTEILLIDGTVDPFNPKAIRAGMGAQFSL 158
>gi|357013574|ref|ZP_09078573.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus elgii B69]
Length = 277
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 24/192 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL- 140
++S NP VK +L S R G L+ G ++E R+V + +L+
Sbjct: 15 LSSVQNPRVKQWTELL-SRKGRDKQGRFLIEGVHLVQEAL--------RSVDLVPEVLVY 65
Query: 141 --DKVEVPEGL-DNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI--DVNQ 195
DK + GL ++ +T V V L+ +E+ P VF++ +
Sbjct: 66 ASDKKQAIAGLLEDAATKGVECVPVTEAVLAKCTDTET---------PQPVFAVVPKLPW 116
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
+ +D + ++V+DGIQDPGNLGT++R+A A GV L G D ++ K +R++
Sbjct: 117 RGSDLLAASEPNGLVVVIDGIQDPGNLGTIIRSADAVGASGVLLGKGTVDLYNPKTVRST 176
Query: 256 RGACFQLPIVSG 267
G+ F LPIV G
Sbjct: 177 MGSLFHLPIVQG 188
>gi|339629794|ref|YP_004721437.1| tRNA/rRNA methyltransferase SpoU [Sulfobacillus acidophilus TPY]
gi|379007091|ref|YP_005256542.1| tRNA/rRNA methyltransferase SpoU [Sulfobacillus acidophilus DSM
10332]
gi|339287583|gb|AEJ41694.1| tRNA/rRNA methyltransferase (SpoU) [Sulfobacillus acidophilus TPY]
gi|361053353|gb|AEW04870.1| tRNA/rRNA methyltransferase (SpoU) [Sulfobacillus acidophilus DSM
10332]
Length = 280
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
++V D IQDPGNLGTL+R A+A V + PG +PF+ K +RAS GA F+LP+V
Sbjct: 124 LMVADAIQDPGNLGTLVRAALAAGARTVAVTPGTVEPFNPKTIRASAGAIFRLPLV 179
>gi|386316349|ref|YP_006012513.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|323126636|gb|ADX23933.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 245
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 15/109 (13%)
Query: 156 TVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDG 215
V VS+ V+K+L+ S + I IA + +P F D K L+L+
Sbjct: 64 VVLVSADVLKELTDSPSPQGI--IAEVDMPQLAFPTDYQGK-------------YLILED 108
Query: 216 IQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
+QDPGNLGT++RTA A + GVFL D ++ K LR+ +G+ F LPI
Sbjct: 109 VQDPGNLGTIIRTADAAGFDGVFLSEKSADVYNSKTLRSMQGSHFHLPI 157
>gi|375088398|ref|ZP_09734738.1| hypothetical protein HMPREF9703_00820 [Dolosigranulum pigrum ATCC
51524]
gi|374562436|gb|EHR33766.1| hypothetical protein HMPREF9703_00820 [Dolosigranulum pigrum ATCC
51524]
Length = 261
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+T SN +K KL + YRH L+ G + E ++ E + L +
Sbjct: 13 LTPASNKQMKEWRKLTRKK-YRHQFNRYLIEGDHLVEEAIRSGLAIHELIATEEAL---E 68
Query: 142 KVEVP-EGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
+ E +G D +S V + +S +++ I A + +P D
Sbjct: 69 RYEATLQGRD-----VYIISKQVAEDISDTVTNQGI--FATIDMP-------------DL 108
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
+ + +ILVLD +QDPGN+GTL+RTA A + V L G D ++ K LR+++G+ F
Sbjct: 109 QIELADMTQILVLDAVQDPGNVGTLIRTADAAGFQAVILGQGTVDLYNSKVLRSAQGSHF 168
Query: 261 QLPIVSG 267
+PI+
Sbjct: 169 HMPIIEA 175
>gi|342183648|emb|CCC93128.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 591
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 78/182 (42%), Gaps = 20/182 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+ + ++H +LRQ+ YR S +V G + E++ ER LL+ +
Sbjct: 128 ISDERHQLIQHFARLRQNPKYRSSKQMIVVSGKALLGELF-------ERGFTPKHLLVRN 180
Query: 142 KVEVPE--GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+VP + T +RV V S I + K P I QK
Sbjct: 181 GHDVPNWASKKGVKTEVIRVERNVADFCSPGNDG-FIGDFDIPKPPPKENLIANKQK--- 236
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
R+LVLD + DPG LGT+LR A+ F + V C D + + +RA+RGA
Sbjct: 237 -------FDRVLVLDNVDDPGILGTVLRAAVGFHYDVVITTNHCADLYDHRVIRAARGAH 289
Query: 260 FQ 261
FQ
Sbjct: 290 FQ 291
>gi|373457858|ref|ZP_09549625.1| tRNA/rRNA methyltransferase (SpoU) [Caldithrix abyssi DSM 13497]
gi|371719522|gb|EHO41293.1| tRNA/rRNA methyltransferase (SpoU) [Caldithrix abyssi DSM 13497]
Length = 269
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 94/216 (43%), Gaps = 23/216 (10%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I+ F + Q YR HG +V G ++E + E +V +D
Sbjct: 2 IKKISKNRLKFFRQL----QKKKYRQEHGLYVVSGLRAVQEALSAAEIAIE-SVLIDEAQ 56
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
L E+P +D V ++ + + ++ + IAL+ + FS+DV +
Sbjct: 57 LHLMNELPRTIDK------EVLTLSGDEFRQLVEEKTPQGIALV-VKKPHFSLDVRR--- 106
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
P +L L+ I DPGNLGTL+R+A F W + L DP++ K +RAS G
Sbjct: 107 -----LP--QALLYLEEINDPGNLGTLMRSAAWFGWQAILLSKNSVDPYAPKTVRASAGT 159
Query: 259 CFQLPIVSG-SWYHLEVLKDEFQMKLLAGHAGGNEE 293
L I LE LK + +L+A A +E
Sbjct: 160 IAHLQIYENVGAAELEQLKKAGRYRLIAASAHTGQE 195
>gi|307244300|ref|ZP_07526415.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM
17678]
gi|306492450|gb|EFM64488.1| RNA methyltransferase, TrmH family [Peptostreptococcus stomatis DSM
17678]
Length = 256
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 77/138 (55%), Gaps = 16/138 (11%)
Query: 129 ERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSV 188
E +D ++L + E L ++ HT+ S + ++S ++S+ I + M+
Sbjct: 43 EHGADIDMVILREGSEFDLDLKDLRVHTL--SKDLYDQVSDTENSQGIMVVVKMR----- 95
Query: 189 FSIDVNQKEADCRSWFPSIHR-ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPF 247
D+++++ D PS HR +LVLD +QDPGN+GT++RTA A + + + GC D +
Sbjct: 96 ---DLSKEDFD-----PSRHRKVLVLDRLQDPGNVGTIIRTADAMGFDLICMAKGCVDVY 147
Query: 248 SEKALRASRGACFQLPIV 265
+ K +R++ G+ F + I+
Sbjct: 148 NPKVVRSAMGSGFYMDIL 165
>gi|389573817|ref|ZP_10163888.1| ysgA [Bacillus sp. M 2-6]
gi|388426387|gb|EIL84201.1| ysgA [Bacillus sp. M 2-6]
Length = 247
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%)
Query: 208 HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
R+L+LD +QDPGNLGTL+RTA A V L G D F+ K LR+++G+ F LPI+
Sbjct: 103 ERMLLLDAVQDPGNLGTLIRTADAAGLDAVVLGDGTVDAFNGKTLRSAQGSHFHLPIL 160
>gi|157413860|ref|YP_001484726.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9215]
gi|157388435|gb|ABV51140.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9215]
Length = 276
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 88/189 (46%), Gaps = 29/189 (15%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVRMDC 136
ITS +N VK ++ SS +H + GT I E+ ++ + E+ +R +
Sbjct: 3 ITSKNNNLVKRFRTFKRGSSPKH-QDFFCIEGTHLIEELLKSGKNPSKILVTEKWLRKNQ 61
Query: 137 LLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
L + + L NI T V S++ G+ AL++I T +
Sbjct: 62 NL---SRKFHQSLINIVTEEVLASAISTINPDGIA--------ALVEIST------IPNY 104
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ D + F +LVLD IQDPGN+G+L RTA+A +F L G P +K LRAS
Sbjct: 105 KFDTKDDF-----VLVLDRIQDPGNMGSLFRTALAAGVDAIF-LAGGAHPLGQKVLRASS 158
Query: 257 GACFQLPIV 265
GA F LP +
Sbjct: 159 GAVFHLPFL 167
>gi|427702629|ref|YP_007045851.1| rRNA methylase [Cyanobium gracile PCC 6307]
gi|427345797|gb|AFY28510.1| rRNA methylase [Cyanobium gracile PCC 6307]
Length = 273
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 170 VQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTA 229
+ + E + A A P V + + AD + P+ +LVLD +QDPGNLGTLLRTA
Sbjct: 80 IATPEVLAAAATTGHPDGVL---LTLEAADLPAPLPAPDFLLVLDRLQDPGNLGTLLRTA 136
Query: 230 MAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
+A V+L G DP K LRAS GA LPI
Sbjct: 137 LAAGVEQVWLAEG-ADPLQPKVLRASSGAALALPI 170
>gi|238854475|ref|ZP_04644814.1| rRNA methylase [Lactobacillus jensenii 269-3]
gi|260665477|ref|ZP_05866324.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
gi|313471838|ref|ZP_07812330.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
gi|238832902|gb|EEQ25200.1| rRNA methylase [Lactobacillus jensenii 269-3]
gi|239529248|gb|EEQ68249.1| RNA methyltransferase, TrmH family [Lactobacillus jensenii 1153]
gi|260560745|gb|EEX26722.1| rRNA methylase [Lactobacillus jensenii SJ-7A-US]
Length = 255
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 87/193 (45%), Gaps = 27/193 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIY----NFNRSLQERTVRM 134
++ ITST+N +K+ K YR G L+ G + E + NF L
Sbjct: 1 MQKITSTTNQTIKNLAK-LNKKKYREQEGYYLIEGFHLVDEAFKSKLNFKYLLATPAA-- 57
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
+K+ + LD V+++ V K LS +S+ + + + P F+ +
Sbjct: 58 -----FEKLNIQYQLDLTDKRLVQINERVAKHLSATTNSQDVFMVLKINQPKH-FTFNFG 111
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ W ++LD + DPGN+GT++RTA A + GV L C D ++ K RA
Sbjct: 112 K-------W-------ILLDSLADPGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRA 157
Query: 255 SRGACFQLPIVSG 267
+G+ F LPI+
Sbjct: 158 MQGSQFHLPIIKA 170
>gi|229916372|ref|YP_002885018.1| tRNA/rRNA methyltransferase SpoU [Exiguobacterium sp. AT1b]
gi|229467801|gb|ACQ69573.1| tRNA/rRNA methyltransferase (SpoU) [Exiguobacterium sp. AT1b]
Length = 248
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 207 IHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
+ ++LVLD +QDPGNLGT++RTA A + V L G DPF+ K +RA++G+ F + + S
Sbjct: 102 MKKVLVLDRVQDPGNLGTMIRTADAAGFDTVLLGKGTVDPFNAKVVRATQGSLFHVNVTS 161
>gi|146101359|ref|XP_001469096.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134073465|emb|CAM72196.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 607
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I + V+H +KL + YR + ++ G I E+ + R + ++C
Sbjct: 117 IDDVHHALVQHFVKLSTNEKYRQARQMLVIGGRAMIEELCRAGH--RPRHLMVEC----- 169
Query: 142 KVEVPEGL-DNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS---IDVNQKE 197
+PE L D T V +V + +S + S + +IPT I +Q+
Sbjct: 170 GKRIPEFLRDRRKTDVV----LVDRSVSAAVTPGSDGYVGDFEIPTPPMKEQLIANHQR- 224
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
++R+LVLD ++DPG LGTLLRTA +++ + C D + + +RA+RG
Sbjct: 225 ---------LNRVLVLDNVEDPGVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARG 275
Query: 258 ACFQLPI 264
A FQ +
Sbjct: 276 AHFQTSV 282
>gi|194476573|ref|YP_002048752.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora]
gi|171191580|gb|ACB42542.1| tRNA/rRNA methyltransferase (SpoU) [Paulinella chromatophora]
Length = 268
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S NP V L ++ R + S L+ GT +EI E
Sbjct: 3 ISSRRNPLVNRIKSLHEAVG-RRATDSILLEGTHLFQEIVRLGLVPNE------------ 49
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
V P+ I T+ + ++ L + + E + AI+ K P V +I + + +
Sbjct: 50 IVATPQW---IQTNNNLIINLPKNNLLKLVTIEVLRAISTTKQPDGVIAI-LPKGQLPLG 105
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
P+ +LVLD +QDPGNLGTL+RTA+A V+LL G DP+ K LRAS GA
Sbjct: 106 PIIPNF--LLVLDHLQDPGNLGTLMRTALAAGVDYVWLLEG-ADPWQPKVLRASAGATLA 162
Query: 262 LPI 264
LP+
Sbjct: 163 LPL 165
>gi|399516609|ref|ZP_10758206.1| rRNA methylase [Leuconostoc pseudomesenteroides 4882]
gi|398648518|emb|CCJ66233.1| rRNA methylase [Leuconostoc pseudomesenteroides 4882]
Length = 258
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 20/189 (10%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ I S N VK KL +H + L+ G + E N + +
Sbjct: 1 MERIISNQNSRVKAWAKLSSKKGRLENH-TYLLDGWHLVEEAVKANAKFH-AVMATSSQM 58
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
L EVP G+ +S V K ++G + + I A + +P F +
Sbjct: 59 TLHLPEVPHGVP-----AFEISEEVAKHIAGTNTPQGI--FAEISLPEKTF----DPAYV 107
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+W L+LD IQDPGN+GTL+RTA A + GV L G D F+ K +RA +G+
Sbjct: 108 HDGAW-------LLLDQIQDPGNVGTLVRTADAAGFKGVVLGEGTADAFAPKVVRAMQGS 160
Query: 259 CFQLPIVSG 267
F L +++G
Sbjct: 161 QFHLEVLNG 169
>gi|339481014|ref|ZP_08656673.1| rRNA methylase [Leuconostoc pseudomesenteroides KCTC 3652]
Length = 258
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 20/189 (10%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ I S N VK KL +H + L+ G + E N + +
Sbjct: 1 MERIISNQNSRVKAWAKLSSKKGRLENH-TYLLDGWHLVEEAVKANAKFH-AVMATSSQM 58
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
L EVP G+ +S V K ++G + + I A + +P F +
Sbjct: 59 ALHLPEVPHGVP-----AFEISEEVAKHIAGTNTPQGI--FAEISLPEKTF----DPAYV 107
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+W L+LD IQDPGN+GTL+RTA A + GV L G D F+ K +RA +G+
Sbjct: 108 HDGAW-------LLLDQIQDPGNVGTLVRTADAAGFKGVVLGEGTADAFAPKVVRAMQGS 160
Query: 259 CFQLPIVSG 267
F L +++G
Sbjct: 161 QFHLEVLNG 169
>gi|398023423|ref|XP_003864873.1| hypothetical protein, conserved [Leishmania donovani]
gi|322503109|emb|CBZ38193.1| hypothetical protein, conserved [Leishmania donovani]
Length = 607
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 25/187 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I + V+H +KL + YR + ++ G I E+ + R + ++C
Sbjct: 117 IDDVHHALVQHFVKLSTNEKYRQARQMLVIGGRAMIEELCRAGH--RPRHLMVEC----- 169
Query: 142 KVEVPEGL-DNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS---IDVNQKE 197
+PE L D T V +V + +S + S + +IPT I +Q+
Sbjct: 170 GKRIPEFLRDRRKTDVV----LVDRSVSAAVTPGSDGYVGDFEIPTPPMKEQLIANHQR- 224
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
++R+LVLD ++DPG LGTLLRTA +++ + C D + + +RA+RG
Sbjct: 225 ---------LNRVLVLDNVEDPGVLGTLLRTASGYQYDAIIATNHCADLYDHRVVRAARG 275
Query: 258 ACFQLPI 264
A FQ +
Sbjct: 276 AHFQTSV 282
>gi|354806803|ref|ZP_09040283.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Lactobacillus curvatus CRL 705]
gi|354514778|gb|EHE86745.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Lactobacillus curvatus CRL 705]
Length = 253
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
R L+LD +QDPGN+GT++RTA A + GV L G D ++ K LR+ +G+ F LPI G+
Sbjct: 108 RYLLLDAVQDPGNIGTMIRTADAADFAGVVLGNGSVDLYNPKLLRSMQGSHFHLPIYQGN 167
>gi|227510511|ref|ZP_03940560.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227513520|ref|ZP_03943569.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577]
gi|227524663|ref|ZP_03954712.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
gi|227083393|gb|EEI18705.1| RNA methyltransferase [Lactobacillus buchneri ATCC 11577]
gi|227088147|gb|EEI23459.1| RNA methyltransferase [Lactobacillus hilgardii ATCC 8290]
gi|227190163|gb|EEI70230.1| RNA methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 255
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 20/189 (10%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+++ITS N VK K+ QS R S G ++ G + E ++ + V +
Sbjct: 1 MQSITSNQNNRVKEWRKM-QSKKGRLSSGQYIIEGWHIVDEAIKHDQQID--AVIVTDAN 57
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
LD++EV D T T ++ V K +S ++ + + A+ + T + + +K
Sbjct: 58 FLDQLEV----DPAVTDTYLITPEVAKHISATETPQGVFAV----LTTENYHESIPEKLG 109
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
SW L+LD IQDPGN+GT++RTA A GV G D ++ K +R+ +G+
Sbjct: 110 --GSW-------LMLDNIQDPGNIGTMVRTADAAGMNGVIFGKGTADIYNPKVVRSMQGS 160
Query: 259 CFQLPIVSG 267
F + + SG
Sbjct: 161 QFHVRLYSG 169
>gi|350267040|ref|YP_004878347.1| spoU rRNA methylase family protein [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349599927|gb|AEP87715.1| spoU rRNA Methylase family protein [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 248
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 26/187 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N VK KL + R + L+ G + E ++E +L
Sbjct: 1 MKQIESAKNQKVKDWKKL-HTKKERTKTNTFLIEGEHLVEEALKSPGMVKE-------IL 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ D+ ++P LD +S +S ++ ++ + I A+ M
Sbjct: 53 VKDETKMPSDLD-VSIQCYVLSEDAFSAVTETETPQQIAAVCHMP--------------- 96
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
S R+L++D +QDPGNLGT++RTA A V L G D ++ K LR+++G+
Sbjct: 97 --EEKLASPQRVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAYNGKTLRSAQGS 154
Query: 259 CFQLPIV 265
F +P+V
Sbjct: 155 HFHIPVV 161
>gi|419704859|ref|ZP_14232403.1| tRNA/rRNA methyltransferase [Mycoplasma canis UF33]
gi|384392847|gb|EIE39300.1| tRNA/rRNA methyltransferase [Mycoplasma canis UF33]
Length = 241
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 37/185 (20%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS N VK+ KL Q YR+ LV G + E +L+ V
Sbjct: 3 LTSKQNSKVKYLKKL-QEKKYRNQENKFLVSGFHLVEE------ALKNNLVE-------- 47
Query: 142 KVEVPEGLDN-ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
E+ E D+ + ++ +VS ++K LS ++S + IAL K P + NQ
Sbjct: 48 --EIFESEDSSVFLNSTKVSYDIIKWLS--ETSTPQKVIALCKKPKLI-----NQ----- 93
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
I+ ++ L+ +QDPGN+GT++R A +F + V + DPF++K +R+S+GA F
Sbjct: 94 -----DINHVIALNNLQDPGNVGTIIRLARSFNFDTVIV--ENIDPFNDKVVRSSQGALF 146
Query: 261 QLPIV 265
+ I+
Sbjct: 147 NINII 151
>gi|336391293|ref|ZP_08572692.1| putative tRNA/rRNA methyltransferase [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 251
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 84/186 (45%), Gaps = 24/186 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS+ N +K L + + R L+ G +RE N + + +L +
Sbjct: 4 ITSSKNDLIKTLRTLTRKKN-REEQQRYLLEGVHLVREALNAQQPI-------TMILATE 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+V L N T + V LS +++ I A++ +P + +
Sbjct: 56 DFQVAAWLPN-DVPTYWLKPEVAHTLSATVTTQGI--FAVLPLP------EAKLPQTFTG 106
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
SW L+LDG+QDPGN+GT++RTA A GV L G D FS K LR+ +G+ F
Sbjct: 107 SW-------LLLDGVQDPGNIGTMVRTADAAGLTGVVLGEGSADLFSAKVLRSMQGSHFH 159
Query: 262 LPIVSG 267
+PI G
Sbjct: 160 IPIYQG 165
>gi|398349924|ref|YP_006395388.1| tRNA/rRNA methyltransferase YsgA [Sinorhizobium fredii USDA 257]
gi|390125250|gb|AFL48631.1| putative tRNA/rRNA methyltransferase YsgA [Sinorhizobium fredii
USDA 257]
Length = 285
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 107/241 (44%), Gaps = 19/241 (7%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L Q +R S + G + + + ++ L
Sbjct: 15 QVKEVTSLTNPIIKDIRALAQKK-HRDETRSFMAEGLKLVIDALDLGWKIK-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ ++ TV +V++ + + I I P V I Q+
Sbjct: 67 VYAKGAKGKPQVEQVAAKTVAKGGLVLEV-----NEKVISTITRRDNPQMVVGI-FEQRY 120
Query: 198 ADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ P + V LD ++DPGNLGT++RTA A G+ L+ DPFS + +RA+
Sbjct: 121 QPLKDIRPGEDQTYVALDRVRDPGNLGTIIRTADAAGASGIILIGETTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQE----LADSFAGVP 312
G+ F +PIV S + ++++A H G+ + R + S+ + + AG+P
Sbjct: 181 GSVFAMPIVRTSVEDFIRWQSSAGVQVVATHLAGSVDYRTIDYRSKPVVLLMGNEQAGLP 240
Query: 313 L 313
+
Sbjct: 241 V 241
>gi|206895377|ref|YP_002246755.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
5265]
gi|206737994|gb|ACI17072.1| 23S rRNA methyltransferase [Coprothermobacter proteolyticus DSM
5265]
Length = 253
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 85/188 (45%), Gaps = 34/188 (18%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S NP +K KL S R G ++ G I E Y +Q ++ L D
Sbjct: 4 IESPKNPKIKEIKKLLSSKKARDEKGQFVLEGPKAI-EAY-----VQSGGKVLELLYSKD 57
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++P+ ++ + + VM+ +S V + + AIA QK R
Sbjct: 58 AKDLPK----VNAVVTQCAPGVMEAVSDVAGDQGVIAIA--------------QK----R 95
Query: 202 SWFPSI----HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
W P RI+VL+ +QDPGNLGT+LRTA AF + GV L G D ++ K +RA G
Sbjct: 96 DWTPQQVLKRKRIVVLEQLQDPGNLGTILRTAAAFDY-GVILTTGSADVYNPKVVRALAG 154
Query: 258 ACFQLPIV 265
F P V
Sbjct: 155 -NFLAPFV 161
>gi|440781727|ref|ZP_20959955.1| RNA methyltransferase [Clostridium pasteurianum DSM 525]
gi|440220445|gb|ELP59652.1| RNA methyltransferase [Clostridium pasteurianum DSM 525]
Length = 260
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 98/207 (47%), Gaps = 37/207 (17%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIY--NFN-------RSLQERTV 132
I S N +K KL Q YR+ + +V G + E NFN S++E+
Sbjct: 4 IKSKDNTIIKDIKKL-QEKKYRNIYNRFIVEGFRFVSEALESNFNVIYVIISESIEEK-- 60
Query: 133 RMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID 192
+K+ + + + ST ++VS ++K + + + I A+ S I+
Sbjct: 61 -------FEKIGLNQKIKG-STKIIKVSESILKSICSTDNPQGIAAVV------SNREIN 106
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
V+ E ++ ++ D +QDPGN+GT++RTA A G+ + G D ++ K L
Sbjct: 107 VDYDEG----FY------ILADRVQDPGNMGTIIRTANAAGAKGIIVTKGSVDIYNSKTL 156
Query: 253 RASRGACFQLP-IVSGSWYHLEVLKDE 278
R++ G+ F++P I+ H++ K++
Sbjct: 157 RSTMGSIFKIPIIIDEDLVHIKEFKEQ 183
>gi|306820001|ref|ZP_07453651.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304551949|gb|EFM39890.1| 23S rRNA methyltransferase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 251
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 85/189 (44%), Gaps = 24/189 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDC-- 136
+K I S N ++K L+Q YR + G I N + +R D
Sbjct: 1 MKYIQSIDNKYIKLVKSLQQGK-YRQKNSMFFDEGIKNIELSLKSNYKMNFVLIREDFKD 59
Query: 137 LLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
L+ +E G D I + ++ + +S +S+ I A+ MK K
Sbjct: 60 TSLIKSLEEKLGEDKI----LVLNEKIFTSISDTVNSQGIIAVYDMK------------K 103
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ D +S +IL+LD IQDPGN+GT++RTA +F +F G D FS K +RA+
Sbjct: 104 DEDIKS-----DKILILDRIQDPGNIGTIIRTAESFSINTIFYSKGTADVFSPKVVRATM 158
Query: 257 GACFQLPIV 265
G+ + + V
Sbjct: 159 GSIYFVNFV 167
>gi|376260544|ref|YP_005147264.1| rRNA methylase [Clostridium sp. BNL1100]
gi|373944538|gb|AEY65459.1| rRNA methylase [Clostridium sp. BNL1100]
Length = 265
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 10/138 (7%)
Query: 161 SVVMKKLSGVQSSESI------EAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLD 214
S +++K+ GV S S+ + ++ + P + ++ + + + D + +++LD
Sbjct: 64 SELIEKVKGVCSDISLVPEKLFKEVSDTQTPQGILAV-LEKNQFDFEQVIEEGNSVVILD 122
Query: 215 GIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG--SWYHL 272
+QDPGN GT++RTA A V + GC D +S K LR++ G+ F +PI G +
Sbjct: 123 CLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPKVLRSTMGSVFHVPIFEGLNITETI 182
Query: 273 EVLKDEFQMKLLAGHAGG 290
+VLK + K++A H G
Sbjct: 183 QVLKQK-GYKVIASHLSG 199
>gi|375363279|ref|YP_005131318.1| TrmH family RNA methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|371569273|emb|CCF06123.1| RNA methyltransferase, TrmH family [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
Length = 257
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 207 IHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+ R+L++D +QDPGNLGT++RTA A V L G DP++ K LR+++G+ F +PI+
Sbjct: 112 LKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHIPIL 170
>gi|337282526|ref|YP_004621997.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912]
gi|335370119|gb|AEH56069.1| SpoU rRNA methylase [Streptococcus parasanguinis ATCC 15912]
Length = 248
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 34/186 (18%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL-- 139
ITS SN +K+ KL Q ++ S L+ G + F +++ + +L
Sbjct: 4 ITSKSNNVIKNAKKLHQK---KYRTDSYLIEGW------HLFEEAVENQAEIRQVFVLEA 54
Query: 140 -LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
LD+VE NI TV V+S ++ L+ ++ + I A L++ P + +
Sbjct: 55 YLDRVE------NIQNVTV-VTSEILSLLADSKTPQGIVAEILLEQPVLPYQLQ------ 101
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
R L L+ +QDPGN+GT++RTA A + GV L D +S K LR+ +G+
Sbjct: 102 ---------GRYLYLEDVQDPGNVGTMIRTADAAGFDGVMLSKASADLYSLKTLRSMQGS 152
Query: 259 CFQLPI 264
F LPI
Sbjct: 153 HFHLPI 158
>gi|157693283|ref|YP_001487745.1| SpoU rRNA methylase family [Bacillus pumilus SAFR-032]
gi|157682041|gb|ABV63185.1| possible SpoU family rRNA methyltransferase [Bacillus pumilus
SAFR-032]
Length = 247
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
R+L+LD +QDPGNLGTL+RTA A V L G D ++ K LR+++G+ F LPI+ S
Sbjct: 104 RLLLLDAVQDPGNLGTLIRTADAAGLDAVILGDGTVDAYNGKTLRSAQGSHFHLPILKQS 163
>gi|451940054|ref|YP_007460692.1| tRNA/rRNA methyltransferase [Bartonella australis Aust/NH1]
gi|451899441|gb|AGF73904.1| tRNA/rRNA methyltransferase [Bartonella australis Aust/NH1]
Length = 275
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 29/195 (14%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK ITS SNP +K+ L Q R+ G + G + + N ++Q L
Sbjct: 8 RVKEITSLSNPIIKNLKALSQKKG-RNRGGIFMAEGLKLVIDALNLGWTIQ-------TL 59
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ ++N + TV V+K S + +E I P +V I Q+
Sbjct: 60 IFSKNKPGNAAIENAAARTVASGGFVIK-----ASQKVMECITHRDNPQTVIGI-FKQR- 112
Query: 198 ADCRSWFPSIHRI--------LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
W P I I + L+ ++DPGNLGT++RTA A GV L+ DPFS
Sbjct: 113 -----WQP-IETIKGLANDVYIALERVRDPGNLGTIIRTADAVGAKGVILIGETTDPFSP 166
Query: 250 KALRASRGACFQLPI 264
+ +RA+ G+ F +P+
Sbjct: 167 ETVRATMGSIFSVPL 181
>gi|325261201|ref|ZP_08127939.1| RNA methyltransferase, TrmH family [Clostridium sp. D5]
gi|324032655|gb|EGB93932.1| RNA methyltransferase, TrmH family [Clostridium sp. D5]
Length = 257
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 19/184 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITST N VK L+L++ S R+ G + G+ + E + +E VR+
Sbjct: 2 ITSTGNQKVKELLQLQKKSRIRNQEGVFIAEGSRMVGE------TPKESLVRLYVSETYY 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
K E L + ++ V +S ++ + I A+ V ++ +E +
Sbjct: 56 KKHEEE-LKKYNRQPEVLTDTVFAYVSDTKTPQGILAV--------VRQMEYTMEEITGK 106
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+ H ILVLD +QDPGNLGT+ RTA A G+ + C D ++ K +R++ GA ++
Sbjct: 107 G---NPH-ILVLDNLQDPGNLGTIFRTAEAAGVTGILMSGDCVDIYNPKTIRSTMGAVYR 162
Query: 262 LPIV 265
+P +
Sbjct: 163 MPFL 166
>gi|385265756|ref|ZP_10043843.1| SpoU rRNA Methylase family protein [Bacillus sp. 5B6]
gi|385150252|gb|EIF14189.1| SpoU rRNA Methylase family protein [Bacillus sp. 5B6]
Length = 257
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 207 IHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+ R+L++D +QDPGNLGT++RTA A V L G DP++ K LR+++G+ F +PI+
Sbjct: 112 LKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHIPIL 170
>gi|419706155|ref|ZP_14233686.1| tRNA/rRNA methyltransferase [Mycoplasma canis UFG4]
gi|384394960|gb|EIE41393.1| tRNA/rRNA methyltransferase [Mycoplasma canis UFG4]
Length = 241
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 37/185 (20%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS N VK+ KL Q YR+ LV G + E +L+ V
Sbjct: 3 LTSKQNSKVKYLKKL-QEKKYRNQENKFLVSGFHLVEE------ALKNNLVE-------- 47
Query: 142 KVEVPEGLDN-ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
E+ E D+ + ++ +VS ++K LS ++S + IAL K P + NQ
Sbjct: 48 --EIFESEDSSVFLNSTKVSYDIIKWLS--ETSTPQKVIALCKKPKLI-----NQ----- 93
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
I+ ++ L+ +QDPGN+GT++R A +F + V + DPF++K +R+S+GA F
Sbjct: 94 -----DINHVIALNNLQDPGNVGTIIRLARSFNFDTVIV--ENIDPFNDKVVRSSQGALF 146
Query: 261 QLPIV 265
+ I+
Sbjct: 147 NINII 151
>gi|429766779|ref|ZP_19299021.1| RNA methyltransferase, TrmH family [Clostridium celatum DSM 1785]
gi|429182925|gb|EKY24001.1| RNA methyltransferase, TrmH family [Clostridium celatum DSM 1785]
Length = 262
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 24/186 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S N K+ KL++ YR ++ G ++E + +++ V + D
Sbjct: 4 IESKENTLFKYTKKLKERK-YRTKENKYIIEGFRLVQEAFKAKCNIEYLIVNENGK---D 59
Query: 142 KVE--VPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
K+ + E +DNI + ++ + +L ++++ I A+ +++N D
Sbjct: 60 KLNDYLNEYMDNIKIYEMKNELFI--QLVATENTQGIIAV-----------VNINNSIDD 106
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
+ F L+ D +QDPGNLGT++RTA A G+ L G D +++K +R++ G+
Sbjct: 107 IKGDFY-----LLCDKVQDPGNLGTIIRTAHAAGVSGIILTKGTVDIYNDKTIRSTMGSI 161
Query: 260 FQLPIV 265
F PI+
Sbjct: 162 FYTPII 167
>gi|386333598|ref|YP_006029768.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
2'-o-methyltransferase) protein [Ralstonia solanacearum
Po82]
gi|334196047|gb|AEG69232.1| 23s rrna (guanosine-2'-o-)-methyltransferase rlmb (23srrna gm2251
2'-o-methyltransferase) protein [Ralstonia solanacearum
Po82]
Length = 259
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+ITS N KH L S+ R G +++ G I+ L CL+
Sbjct: 1 MKHITSRDNAVFKHLKALSGSTQQRRRAGQSVLDG------IHLVAAYLDAGHTPAQCLV 54
Query: 139 LLDKVEVPEGLDNIS----THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
+ PE ++ H + ++ + +L+ V + I+ +AL+ P +
Sbjct: 55 SERHLAHPEVAPLLARVDPQHVILLADSLFAQLTTVVNG--IDLMALIDTPEGHLP---H 109
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ E DC ++LDGIQD GN+G++LR A A VF+ GC +S K LRA
Sbjct: 110 RIEHDC----------VILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRA 159
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
+ GA F L IV + E + + LLA
Sbjct: 160 AMGAHFHLNIVEHCTF--ESMHARLHVPLLA 188
>gi|427414246|ref|ZP_18904436.1| hypothetical protein HMPREF9282_01843 [Veillonella ratti
ACS-216-V-Col6b]
gi|425714622|gb|EKU77625.1| hypothetical protein HMPREF9282_01843 [Veillonella ratti
ACS-216-V-Col6b]
Length = 259
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 19/183 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N +K+ L Q YR +G L G + ++ + VR D +D
Sbjct: 4 ITSKENKTLKYAQSLLQKK-YRKLNGEYLAEGLRTVTDMMATGL-VTTIFVRED----ID 57
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++ + + + +V +M + + + I AI V ++ D
Sbjct: 58 YQKIVKEAEQLHIKVWQVQRNLMSHIESTVTGQGIVAI-------------VKKEVQDIS 104
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+ S ++LD IQDPGNLGT++RTA+A G+FL G DP++EK +R++ A +
Sbjct: 105 TLKVSDGLYVLLDEIQDPGNLGTIIRTAVAAGVKGLFLTKGSADPYNEKTVRSTMSAITK 164
Query: 262 LPI 264
+PI
Sbjct: 165 IPI 167
>gi|384938193|ref|ZP_10029885.1| tRNA/rRNA methyltransferase [Mycoplasma canis UF31]
gi|384393154|gb|EIE39605.1| tRNA/rRNA methyltransferase [Mycoplasma canis UF31]
Length = 241
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 37/185 (20%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS N VK+ KL Q YR+ L+ G + E +L+ V
Sbjct: 3 LTSKQNSKVKYLKKL-QEKKYRNQENKFLISGFHLVEE------ALKNNLVE-------- 47
Query: 142 KVEVPEGLDN-ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
E+ E D+ + ++ +VS ++K LS ++S + IAL K P + NQ
Sbjct: 48 --EIFESEDSSVFLNSTKVSYDIIKWLS--ETSTPQKVIALCKKPKLI-----NQ----- 93
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
I+ ++ L+ +QDPGN+GT++R A +F + V + DPF++K +R+S+GA F
Sbjct: 94 -----DINHVIALNNLQDPGNVGTIIRLARSFNFDTVIV--ENIDPFNDKVVRSSQGALF 146
Query: 261 QLPIV 265
+ IV
Sbjct: 147 NINIV 151
>gi|300704216|ref|YP_003745819.1| tRNA/rRNA methyltransferase, spou like [Ralstonia solanacearum
CFBP2957]
gi|299071880|emb|CBJ43209.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
solanacearum CFBP2957]
Length = 263
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+ITS N KH L S+ R G +++ G I+ L CL+
Sbjct: 1 MKHITSRDNAVFKHLKALSGSTQQRRRAGQSVLDG------IHLVAAYLDAGHTPTQCLV 54
Query: 139 LLDKVEVPEGLDNIS----THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
+ PE ++ H + ++ + +L+ V + I+ +AL+ P +
Sbjct: 55 SERHLAHPEVAPLLARVDPQHVILLADSLFAQLTTVVNG--IDLMALIDTPEGHLP---H 109
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ E DC ++LDGIQD GN+G++LR A A VF+ GC +S K LRA
Sbjct: 110 RIEHDC----------VILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRA 159
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
+ GA F L IV + E + + LLA
Sbjct: 160 AMGAHFHLNIVEHCTF--ESMHARLHVPLLA 188
>gi|255526051|ref|ZP_05392974.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
gi|255510237|gb|EET86554.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium carboxidivorans P7]
Length = 260
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 61/113 (53%), Gaps = 16/113 (14%)
Query: 153 STHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILV 212
ST VS V+K LS ++ + I A+ K ++V KE ++
Sbjct: 73 STKIYWVSEQVLKLLSDTETPQGITAVVDNK------ELNVENKEG----------FYVL 116
Query: 213 LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+D +QDPGN+GT++RTA A K GV + G D ++EK LR++ G+ F +P++
Sbjct: 117 VDKVQDPGNMGTIIRTAHASKALGVIITKGTVDIYNEKTLRSTMGSIFHVPVI 169
>gi|452856517|ref|YP_007498200.1| putative RNA methylase [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
gi|452080777|emb|CCP22542.1| putative RNA methylase [Bacillus amyloliquefaciens subsp. plantarum
UCMB5036]
Length = 248
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 207 IHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+ R+L++D +QDPGNLGT++RTA A V L G DP++ K LR+++G+ F +PI+
Sbjct: 103 LKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHIPIL 161
>gi|407718703|ref|YP_006796108.1| rRNA methylase [Leuconostoc carnosum JB16]
gi|407242459|gb|AFT82109.1| rRNA methylase [Leuconostoc carnosum JB16]
Length = 257
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 18/124 (14%)
Query: 144 EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSW 203
+VP G+ +S+ V K ++G + + I A + +P F N +W
Sbjct: 64 DVPHGVP-----AFEISAEVAKHIAGTNTPQGI--FAEISLPDKTF----NPSYVHDGAW 112
Query: 204 FPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
L+LD IQDPGN+GTL+RTA A + GV L G D F+ K +RA +G+ F L
Sbjct: 113 -------LLLDNIQDPGNVGTLIRTADAAGFKGVVLGAGTADVFAPKVVRAMQGSQFHLE 165
Query: 264 IVSG 267
+++G
Sbjct: 166 VLNG 169
>gi|406837284|ref|ZP_11096878.1| 23S rRNA methyltransferase [Lactobacillus vini DSM 20605]
Length = 258
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 28/195 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N +VK+ KL+ R S L+ G ++E LQ V D
Sbjct: 1 MKKIESIQNRYVKNWTKLKTKKG-RKIQQSYLLEGWHLVKEALLAQIKLQVILVTAD--- 56
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIA-----LMKIPTSVFSIDV 193
++ E+ + L N + +S V+ +K+S + I AIA L +IP +
Sbjct: 57 FKEQAELTK-LINQEQQLILISPVIAEKISDTGHPQGIFAIAALEKSLAEIPAEL----- 110
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
W L+LD +QDPGN+GT++RTA A + GV G D F K +R
Sbjct: 111 ------AGKW-------LLLDNVQDPGNIGTMVRTADAAGFSGVVFGRGTADLFQPKVVR 157
Query: 254 ASRGACFQLPIVSGS 268
+ +G+ F + + +G+
Sbjct: 158 SMQGSQFHIRLFTGN 172
>gi|72080483|ref|YP_287541.1| putative tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae
7448]
Length = 249
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 32/203 (15%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K ITS +NP +K KL+ YR+ +V G I N L+ T + +
Sbjct: 1 MKEITSYNNPIIKEIGKLKLKK-YRNLWNKFVVEGEKDIESAINAGLVLRILTTKNNV-- 57
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
E ++ V VS +++KLS +S P+ V ++ ++K+
Sbjct: 58 --------EKYQKVNVDVVIVSQKILEKLSQHKS------------PSEVIAVCKSKKQR 97
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ + S R+++L+ IQ+PGNLGT++R +F G L+ D ++ K + AS+GA
Sbjct: 98 KIKDFLDS-KRLVILENIQNPGNLGTIIRNCYSF---GFDLVYSGVDLYNVKTISASKGA 153
Query: 259 CFQLPIVSGSWYHLEVLKDEFQM 281
F I Y L+ + D F+
Sbjct: 154 IFMANI-----YFLKNISDFFKF 171
>gi|419705504|ref|ZP_14233042.1| tRNA/rRNA methyltransferase [Mycoplasma canis UFG1]
gi|384394807|gb|EIE41241.1| tRNA/rRNA methyltransferase [Mycoplasma canis UFG1]
Length = 241
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 37/185 (20%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS N VK+ KL Q YR+ LV G + E +L+ V
Sbjct: 3 LTSKQNSKVKYLKKL-QEKKYRNQENKFLVSGFHLVEE------ALKNNLVE-------- 47
Query: 142 KVEVPEGLDN-ISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADC 200
E+ E D+ + ++ +VS ++K LS ++S + IAL K P + NQ
Sbjct: 48 --EIFESEDSSVFLNSTKVSYDIIKWLS--ETSTPQKVIALCKKPKLI-----NQ----- 93
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
I+ ++ L+ +QDPGN+GT++R A +F + V + DPF++K +R+S+GA F
Sbjct: 94 -----DINHVIALNNLQDPGNVGTIIRLARSFNFDTVIV--ENIDPFNDKVVRSSQGALF 146
Query: 261 QLPIV 265
+ I+
Sbjct: 147 NINII 151
>gi|94499455|ref|ZP_01305992.1| rRNA methyltransferase [Bermanella marisrubri]
gi|94428209|gb|EAT13182.1| rRNA methyltransferase [Oceanobacter sp. RED65]
Length = 249
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 86/174 (49%), Gaps = 21/174 (12%)
Query: 95 KLRQSSSYRHSHGSALVVGTTPIREIYN---FNRSLQERTVRM-DCLLLLDKVEVPEGLD 150
KL Q YR+ +G LV G I E+ N +LQ TV + + L++ L+
Sbjct: 8 KLHQKK-YRNEYGCFLVEGEHLILELAKAAKHNPALQASTVYLSESYGELEQ----SALN 62
Query: 151 NISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRI 210
+S VRV+ M+K++ ++ + I A+ +P F+ + Q+ + R
Sbjct: 63 GLSLKQVRVTDKQMQKMADTKTPQGIVAV----VP---FNDERTQQAIASDN-----ERT 110
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
+ L +QDPGNLGT+LRT F L P DP++ K +RAS GA F +PI
Sbjct: 111 VYLYEVQDPGNLGTILRTLAWFGGFRCVLSPNSVDPYNPKVVRASMGAIFHVPI 164
>gi|394991844|ref|ZP_10384642.1| YsgA [Bacillus sp. 916]
gi|393807389|gb|EJD68710.1| YsgA [Bacillus sp. 916]
Length = 248
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 207 IHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+ R+L++D +QDPGNLGT++RTA A V L G DP++ K LR+++G+ F +PI+
Sbjct: 103 LKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHIPIL 161
>gi|342218591|ref|ZP_08711201.1| RNA methyltransferase, TrmH family [Megasphaera sp. UPII 135-E]
gi|341589461|gb|EGS32736.1| RNA methyltransferase, TrmH family [Megasphaera sp. UPII 135-E]
Length = 272
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 31/197 (15%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N + L+Q R LV G I + +LQ+ + C +
Sbjct: 1 MQEITSRHNRLIMRACSLKQKKG-RQQEQHVLVEGWRLITD------ALQQGIRQGICFI 53
Query: 139 LLDKVEVPEGLDNISTHT---------VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVF 189
V+ + D+++ +T RVS+ V +KL SS+ I IA++
Sbjct: 54 ----VDTEKTTDHMALYTRGKELQWQFFRVSTSVYQKLQMTSSSQGI--IAMLPF----- 102
Query: 190 SIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
N A+ + + ++ L IQDPGN+GT++RTA A G + L P C D +++
Sbjct: 103 ---FNHTLAEAET-LQLLQPVVYLQDIQDPGNVGTIIRTAAACDVGAILLSPNCVDIYND 158
Query: 250 KALRASRGACFQLPIVS 266
K R++ GA F++ ++S
Sbjct: 159 KVWRSAMGAMFKILVIS 175
>gi|256850851|ref|ZP_05556240.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
gi|260661062|ref|ZP_05861976.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
gi|297205725|ref|ZP_06923120.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
gi|256615913|gb|EEU21101.1| rRNA methylase [Lactobacillus jensenii 27-2-CHN]
gi|260547999|gb|EEX23975.1| rRNA methylase [Lactobacillus jensenii 115-3-CHN]
gi|297148851|gb|EFH29149.1| TrmH family RNA methyltransferase [Lactobacillus jensenii JV-V16]
Length = 255
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 27/193 (13%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIY----NFNRSLQERTVRM 134
++ ITST+N +K+ K YR G L+ G + E + NF L +
Sbjct: 1 MQKITSTTNQTIKNLAK-LNKKKYREQEGFYLIEGFHLVDEAFKSKLNFKYLLATQAA-- 57
Query: 135 DCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
+K+ + LD ++++ V K LS +S+ + + + P F+ +
Sbjct: 58 -----FEKLSIQYHLDLTDKRLIQINERVAKHLSATTNSQDVFMVLKINQPKH-FTFNFG 111
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ W ++LD + DPGN+GT++RTA A + GV L C D ++ K RA
Sbjct: 112 K-------W-------ILLDSLADPGNIGTIIRTADAAGFNGVVLSENCADLYNPKTQRA 157
Query: 255 SRGACFQLPIVSG 267
+G+ F +PI+
Sbjct: 158 MQGSQFHIPIIKA 170
>gi|154687000|ref|YP_001422161.1| hypothetical protein RBAM_025720 [Bacillus amyloliquefaciens FZB42]
gi|421730729|ref|ZP_16169855.1| RNA methyltransferase, TrmH family protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|451345985|ref|YP_007444616.1| TrmH family RNA methyltransferase [Bacillus amyloliquefaciens
IT-45]
gi|154352851|gb|ABS74930.1| YsgA [Bacillus amyloliquefaciens FZB42]
gi|407074883|gb|EKE47870.1| RNA methyltransferase, TrmH family protein [Bacillus
amyloliquefaciens subsp. plantarum M27]
gi|449849743|gb|AGF26735.1| TrmH family RNA methyltransferase [Bacillus amyloliquefaciens
IT-45]
Length = 248
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 207 IHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+ R+L++D +QDPGNLGT++RTA A V L G DP++ K LR+++G+ F +PI+
Sbjct: 103 LKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHIPIL 161
>gi|33866165|ref|NP_897724.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102]
gi|33639140|emb|CAE08146.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. WH 8102]
Length = 278
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 208 HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
H +LVLD IQDPGNLGTLLRTA+A V+L G DP K+LRAS GA QLP
Sbjct: 109 HFLLVLDRIQDPGNLGTLLRTALAADVQNVWLGSG-VDPLGSKSLRASAGALLQLP 163
>gi|424898008|ref|ZP_18321582.1| rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM2297]
gi|393182235|gb|EJC82274.1| rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM2297]
Length = 286
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 108/255 (42%), Gaps = 35/255 (13%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L S R G+ L G + + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTNKKS-REESGTFLAEGLKLVIDAIELGWTIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ ++ TV +V++ S + I +I P V I Q+
Sbjct: 67 VYAKAAKGKPLVEQMAAKTVASGGLVLE-----VSEKVIASITRRDNPQMVVGI-FEQRW 120
Query: 198 ADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
R P V LD ++DPGNLGT++RTA A G+ L+ DPFS + +RA+
Sbjct: 121 KPLREIRPRDGETWVALDRVRDPGNLGTIIRTADAAGASGIILIGETTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGH-AG------------------GNEEPRQV 297
G+ F +P+ + + + ++A H AG GNE+
Sbjct: 181 GSVFAVPVARATAEEFVAWRKSAGVSVVATHLAGAVDYRTIDYRKKPTVLLMGNEQSGLP 240
Query: 298 LQLSQELADSFAGVP 312
QL++E AD+ A +P
Sbjct: 241 EQLARE-ADALARIP 254
>gi|195978751|ref|YP_002123995.1| RNA methyltransferase TrmH family [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225867931|ref|YP_002743879.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp.
zooepidemicus]
gi|195975456|gb|ACG62982.1| RNA methyltransferase TrmH family [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225701207|emb|CAW98137.1| SpoU rRNA Methylase family protein [Streptococcus equi subsp.
zooepidemicus]
Length = 245
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 200 CRSWFPSIH--RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
C+ P+ + + L+L+ IQDPGNLGT++RTA A + GVFL D +++K LR+ +G
Sbjct: 91 CQQALPTSYAGKYLILEDIQDPGNLGTIIRTADAANFDGVFLSEKSADIYNQKTLRSMQG 150
Query: 258 ACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
+ F LPI Y + + ++ +LA
Sbjct: 151 SHFHLPIWRTDIYQVSQAMQQQKIPVLA 178
>gi|220928862|ref|YP_002505771.1| TrmH family RNA methyltransferase [Clostridium cellulolyticum H10]
gi|219999190|gb|ACL75791.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
cellulolyticum H10]
Length = 269
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 17/211 (8%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S+ N +K L + R +HG V G + + + +S+ + + L
Sbjct: 4 IQSSQNSTIKDIKSLHLKKN-RDAHGLYFVEGIRFVSDAIDNGQSIAKIIISEKLEGLNG 62
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
E+ E + + V + +++S Q+ + I A+ I + +S D E
Sbjct: 63 GSELIEKVKGACSDISLVPEKIFREVSDTQTPQGILAV----IKKNKYSFDKVITEGSS- 117
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+++LD +QDPGN GT++RTA A V + GC D +S K LR++ G+ F
Sbjct: 118 --------VVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPKVLRSTMGSVFH 169
Query: 262 LPIVSGSWYH--LEVLKDEFQMKLLAGHAGG 290
+PI G + VLK + K++A H G
Sbjct: 170 IPIFEGLNITEIIRVLK-QNDYKVIASHLSG 199
>gi|50365074|ref|YP_053499.1| rRNA methylase [Mesoplasma florum L1]
gi|50363630|gb|AAT75615.1| rRNA methylase [Mesoplasma florum L1]
Length = 251
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 26/185 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN +K +KLR ++ ++ G ++ N +++ V+ + L+
Sbjct: 4 ITSTSNKKIKDLIKLRDDKKFQTVENLFVIEG------LHMVNEAIKRNIVKT---IFLE 54
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ + D + V +S V K+S ++S+ I A +++ +QK
Sbjct: 55 EKMFSKIYDINNFECVLISENVSNKISSTKTSQGIFATCILE----------DQK----- 99
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+ IL+LD IQDPGN+GTL+R+A +F++ V ++ K LR+++G F
Sbjct: 100 --INMLENILILDQIQDPGNMGTLIRSAASFEFQTVVASNNSVSFYNPKVLRSTQGNLFS 157
Query: 262 LPIVS 266
+ +++
Sbjct: 158 INLIN 162
>gi|118586223|ref|ZP_01543687.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163]
gi|118433339|gb|EAV40041.1| rRNA methylase [Oenococcus oeni ATCC BAA-1163]
Length = 255
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 89/187 (47%), Gaps = 26/187 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTV---RMDCLL 138
ITS N VK L Q+ R G+ ++ G +++ N +Q +MD L
Sbjct: 4 ITSNQNSRVKIWTSL-QTLKGREKSGTYMLDGWHLVQDALNQAAPIQAVIATEEQMDQHL 62
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++VP+G+ +VS V + ++ + + I A +P + F + K
Sbjct: 63 ----IDVPQGVP-----AFQVSEEVARHIAKTNTPQGI--FAQTSLPNNSF----DPKYV 107
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
SW L+LD IQDPGN+GTL+RTA A + GV L DPF+ K +RA +G+
Sbjct: 108 HNGSW-------LLLDRIQDPGNVGTLIRTADAAGFSGVALSKESADPFNPKVVRAMQGS 160
Query: 259 CFQLPIV 265
F L +V
Sbjct: 161 QFHLKLV 167
>gi|103487534|ref|YP_617095.1| tRNA/rRNA methyltransferase SpoU [Sphingopyxis alaskensis RB2256]
gi|98977611|gb|ABF53762.1| tRNA/rRNA methyltransferase (SpoU) [Sphingopyxis alaskensis RB2256]
Length = 270
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 86/196 (43%), Gaps = 27/196 (13%)
Query: 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVG---TTPIREIYNFNRSL----QERTVR 133
I S SNP VK LR+ +R + G L G T RE F L
Sbjct: 7 QIESLSNPLVKRMRLLREKR-HRRAEGLFLAEGLRIATEAREAGVFPAWLFLGPDGAAHP 65
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ L+ D + + ++ ++ KLSG + ++I I + T++ +ID
Sbjct: 66 LAQALVADTMAA-------GGEVIDTTAAILSKLSGKDNPQTIVGI-YAEPATTLAAIDR 117
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
N W LV + ++DPGNLGT+LRT A GG+ LL DP+ +A+R
Sbjct: 118 NAAPI----W-------LVAERLRDPGNLGTMLRTGDAVGAGGLILLGDSTDPYGVEAVR 166
Query: 254 ASRGACFQLPIVSGSW 269
AS GA F +V W
Sbjct: 167 ASMGAIFTQRLVQARW 182
>gi|71893496|ref|YP_278942.1| tRNA/rRNA methyltransferase [Mycoplasma hyopneumoniae J]
Length = 249
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 94/203 (46%), Gaps = 32/203 (15%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K ITS +NP +K KL+ YR+ +V G I N L+ T + +
Sbjct: 1 MKKITSYNNPIIKEIGKLKLKK-YRNLWNKFVVEGEKDIESAINAGLVLRILTTKNNV-- 57
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
E ++ V VS +++KLS +S P+ V ++ ++K+
Sbjct: 58 --------EKYQKVNVDVVIVSQKILEKLSQHKS------------PSEVIAVCKSKKQR 97
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+ + S R+++L+ IQ+PGNLGT++R +F G L+ D ++ K + AS+GA
Sbjct: 98 KIKDFLDS-KRLVILENIQNPGNLGTIIRNCYSF---GFDLVYSGVDLYNVKTISASKGA 153
Query: 259 CFQLPIVSGSWYHLEVLKDEFQM 281
F I Y L+ + D F+
Sbjct: 154 IFMANI-----YFLKNISDFFKF 171
>gi|13357887|ref|NP_078161.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|167971835|ref|ZP_02554112.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
gi|168282544|ref|ZP_02690211.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|168308698|ref|ZP_02691373.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|170762188|ref|YP_001752409.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
gi|11357051|pir||C82904 rRNA methylase UU327 [imported] - Ureaplasma urealyticum
gi|6899305|gb|AAF30736.1|AE002130_3 rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|168827765|gb|ACA33027.1| rRNA methylase [Ureaplasma parvum serovar 3 str. ATCC 27815]
gi|171902435|gb|EDT48724.1| rRNA methylase [Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|182675668|gb|EDT87573.1| rRNA methylase [Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|186701207|gb|EDU19489.1| rRNA methylase [Ureaplasma parvum serovar 6 str. ATCC 27818]
Length = 257
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 33/191 (17%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K ITS N + H +L YR ++ ++ G + E +LQ + + +
Sbjct: 2 LKIITSNKNEEIIHFYRLIHDKKYREANKLFIIEGFKLLDE------ALQNQQTIVS--I 53
Query: 139 LLDKVEVPEGLDNISTHTV-------RVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI 191
++++ + + I +T+ +VS ++KKLS + E +A++KI + I
Sbjct: 54 IINEHVYNKEFETIFKYTLYDNIQIYKVSGNIIKKLSV--NIEPSPILAVVKIKQEMCDI 111
Query: 192 DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
+ N IL+LD IQDPGNLGT+LRT AF V + C D ++ K
Sbjct: 112 NDN---------------ILLLDNIQDPGNLGTILRTCFAFNIKQV-IFNNCVDLYNPKT 155
Query: 252 LRASRGACFQL 262
++AS GA F++
Sbjct: 156 IKASMGAIFKI 166
>gi|89256424|ref|YP_513786.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
LVS]
gi|115314861|ref|YP_763584.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
OSU18]
gi|156502516|ref|YP_001428581.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254367761|ref|ZP_04983782.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
257]
gi|422938804|ref|YP_007011951.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
FSC200]
gi|423050774|ref|YP_007009208.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
F92]
gi|89144255|emb|CAJ79529.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
LVS]
gi|115129760|gb|ABI82947.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
OSU18]
gi|134253572|gb|EBA52666.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
257]
gi|156253119|gb|ABU61625.1| rRNA methyltransferase, TrmH family protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|407293955|gb|AFT92861.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
FSC200]
gi|421951496|gb|AFX70745.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
F92]
Length = 250
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
ILVLD IQDPGN+GT+LRTA+A V L+ G DPF+ KA+ A GA F L
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIMAGMGAQFSL 157
>gi|429204352|ref|ZP_19195641.1| 23S rRNA methyltransferase [Lactobacillus saerimneri 30a]
gi|428147293|gb|EKW99520.1| 23S rRNA methyltransferase [Lactobacillus saerimneri 30a]
Length = 256
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 20/187 (10%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS +N VK KL Q+ R G L+ G ++E L E +
Sbjct: 2 IQEITSATNQRVKDWAKL-QTKRGRCKQGKYLLDGWHLVKEAIAAQAPLLEIIFTAESK- 59
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++P+ LD +++ + KKLS S + I A + P ++ +V
Sbjct: 60 --HHTDLPDDLD---VPYFQITDSIAKKLSTTPSPQGIFATVALPEPNAINPDEVQ---- 110
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
+W L LD +QDPGN+GTL+RTA A + GV G D K LRA +G+
Sbjct: 111 --GAW-------LFLDQVQDPGNIGTLVRTADAAGFAGVVFGNGTADYHQPKVLRAMQGS 161
Query: 259 CFQLPIV 265
F L +V
Sbjct: 162 QFHLQLV 168
>gi|190890065|ref|YP_001976607.1| rRNA methylase [Rhizobium etli CIAT 652]
gi|190695344|gb|ACE89429.1| rRNA methylase protein [Rhizobium etli CIAT 652]
Length = 286
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 112/263 (42%), Gaps = 51/263 (19%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L S R G+ L G + + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTNKKS-REESGTFLAEGLKLVIDAIELGWTIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI------ 191
+ + ++ ++ TV +V++ S + I +I + P V I
Sbjct: 67 VYAKAAKGKPLVEQMAAKTVASGGLVLE-----VSEKVIGSITRRENPQMVVGIFDQRWK 121
Query: 192 ---DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFS 248
D+ +E + +W + LD ++DPGNLGT++RTA A GV L+ DPFS
Sbjct: 122 PLKDIRPREGE--TW-------VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFS 172
Query: 249 EKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGH-AG------------------ 289
+ +RA+ G+ F +P+ + + + ++A H AG
Sbjct: 173 LETVRATMGSVFAVPVARATPEEFLAWRKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLM 232
Query: 290 GNEEPRQVLQLSQELADSFAGVP 312
GNE+ QL++E AD+ A +P
Sbjct: 233 GNEQSGLPEQLAKE-ADALARIP 254
>gi|421588164|ref|ZP_16033483.1| tRNA/rRNA methyltransferase SpoU [Rhizobium sp. Pop5]
gi|403707198|gb|EJZ22263.1| tRNA/rRNA methyltransferase SpoU [Rhizobium sp. Pop5]
Length = 286
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 95/221 (42%), Gaps = 15/221 (6%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L S R G+ L G + + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTNKKS-REESGTFLAEGLKLVIDAIELGWTIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ ++ TV +V++ S + I +I P V I Q+
Sbjct: 67 VYAKAAKGKPLVEQMAAKTVAAGGLVLE-----VSEKVIGSITRRDNPQMVVGI-FEQRW 120
Query: 198 ADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
R P V LD ++DPGNLGT++RTA A GV L+ DPFS + +RA+
Sbjct: 121 KPLRDIRPRDGETWVALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
G+ F +P+ + + + ++A H G + R +
Sbjct: 181 GSVFAVPVARATPEEFIAWRKSAGVSVVATHLAGAVDYRTI 221
>gi|332638057|ref|ZP_08416920.1| rRNA methylase [Weissella cibaria KACC 11862]
Length = 256
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N VK KL Q+ R + + L+ G ++E L + L
Sbjct: 1 METITSVQNSRVKSWQKL-QTKKGRQASKTYLLDGWHLVQEAIQHEGKLHAIMATPEQL- 58
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
E E L + +++ + KKLS + + P VF+ +V+ A
Sbjct: 59 ----AEHQEALP-LGVPVFEITTDIAKKLSDLVT------------PQGVFA-EVSLPTA 100
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
F L LD IQDPGN+GT++RTA A + GV G DP+S KALRA +G+
Sbjct: 101 TREPRFIHDGAWLFLDAIQDPGNIGTMVRTADAAGFAGVVFGNGSVDPYSPKALRAMQGS 160
Query: 259 CFQLPIVSG 267
F + + +G
Sbjct: 161 QFHMTLTTG 169
>gi|296187098|ref|ZP_06855496.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7]
gi|296048292|gb|EFG87728.1| RNA methyltransferase, TrmH family [Clostridium carboxidivorans P7]
Length = 213
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 61/113 (53%), Gaps = 16/113 (14%)
Query: 153 STHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILV 212
ST VS V+K LS ++ + I A+ +D + + + F ++
Sbjct: 26 STKIYWVSEQVLKLLSDTETPQGITAV-----------VDNKELNVENKEGF-----YVL 69
Query: 213 LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+D +QDPGN+GT++RTA A K GV + G D ++EK LR++ G+ F +P++
Sbjct: 70 VDKVQDPGNMGTIIRTAHASKALGVIITKGTVDIYNEKTLRSTMGSIFHVPVI 122
>gi|254874998|ref|ZP_05247708.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254840997|gb|EET19433.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
MA00-2987]
Length = 213
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
ILVLD IQDPGN+GT+LRTA+A V L+ DPF+ KA+RA GA F L
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKAIRAGMGAQFSL 157
>gi|283777897|ref|YP_003368652.1| tRNA/rRNA methyltransferase SpoU [Pirellula staleyi DSM 6068]
gi|283436350|gb|ADB14792.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
Length = 272
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 100/220 (45%), Gaps = 40/220 (18%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+ ITS N VK +KLR+ + R ++ G REI R+L V ++ L
Sbjct: 2 IPTITSLQNLRVKQAVKLRERKA-RDEQQRIIIDGE---REI---TRALGAGVVALE-LF 53
Query: 139 LLDKVEVPEGLDNISTHTVR-----------VSSVVMKKLSGVQSSESIEAIALMKIPTS 187
+LD VE L S T+R VS VM+KL+ E E I + + P+
Sbjct: 54 VLDGVE----LSATSQQTMRHARESGATILPVSRQVMEKLAFGDRVE--EVILVAESPSP 107
Query: 188 VFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPF 247
+ K A R + V++G++ PGNLG +LR+A A GV + D +
Sbjct: 108 ALDTFLQDKLAAKRDLL-----VAVVEGVEKPGNLGAILRSADAAGIDGVIVCGARLDLY 162
Query: 248 SEKALRASRGACFQLPIV------SGSWYHLEVLKDEFQM 281
+ A+RAS GA F LP++ + +W + +FQM
Sbjct: 163 NPNAIRASLGALFTLPVIGMTVPQALAWLRMH----QFQM 198
>gi|56708186|ref|YP_170082.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110670657|ref|YP_667214.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
FSC198]
gi|254370673|ref|ZP_04986678.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
FSC033]
gi|379717424|ref|YP_005305760.1| RNA methyltransferase TrmH family [Francisella tularensis subsp.
tularensis TIGB03]
gi|379726028|ref|YP_005318214.1| RNA methyltransferase TrmH family [Francisella tularensis subsp.
tularensis TI0902]
gi|385794867|ref|YP_005831273.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
NE061598]
gi|421755753|ref|ZP_16192693.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
80700075]
gi|56604678|emb|CAG45741.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110320990|emb|CAL09124.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
FSC198]
gi|151568916|gb|EDN34570.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
FSC033]
gi|282159402|gb|ADA78793.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
NE061598]
gi|377827477|gb|AFB80725.1| RNA methyltransferase TrmH family [Francisella tularensis subsp.
tularensis TI0902]
gi|377829101|gb|AFB79180.1| RNA methyltransferase TrmH family [Francisella tularensis subsp.
tularensis TIGB03]
gi|409087553|gb|EKM87647.1| rRNA methyltransferase [Francisella tularensis subsp. tularensis
80700075]
Length = 250
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
ILVLD IQDPGN+GT+LRTA+A V L+ DPF+ KA+RA GA F L
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKAIRAGMGAQFSL 157
>gi|358012254|ref|ZP_09144064.1| tRNA/rRNA methyltransferase [Acinetobacter sp. P8-3-8]
Length = 258
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 88/185 (47%), Gaps = 26/185 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL-- 139
+ S NP +KH L + ++YR G ++ GT + + + E+ +++ +
Sbjct: 6 LESKDNPKIKHLRGLIEQNTYRKKQGQTVLEGT-------HLSLAWLEKGRKINSIFTTE 58
Query: 140 --LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
LD ++ E +D +S + K LS + ++ + +A++ +P+S +++ N+
Sbjct: 59 HALDHEDLGEIIDQYQGAVFVISESLYKDLSTLGTT--LACLAIVDLPSSTQALNFNED- 115
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
L+L+ +QDPGN+GTLLR+A A V G +S + LRA G
Sbjct: 116 ------------TLILENVQDPGNVGTLLRSAAAAGIEQVVCTKGSASLWSPRVLRAGMG 163
Query: 258 ACFQL 262
A F L
Sbjct: 164 AHFSL 168
>gi|54114167|gb|AAV29717.1| NT02FT1402 [synthetic construct]
Length = 250
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
ILVLD IQDPGN+GT+LRTA+A V L+ DPF+ KA+RA GA F L
Sbjct: 105 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINDTVDPFNPKAIRAGMGAQFSL 157
>gi|294620204|ref|ZP_06699538.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679]
gi|314940174|ref|ZP_07847352.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133a04]
gi|314942409|ref|ZP_07849252.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133C]
gi|314952315|ref|ZP_07855326.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133A]
gi|314994242|ref|ZP_07859545.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133B]
gi|314997157|ref|ZP_07862143.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133a01]
gi|424963509|ref|ZP_18377721.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1190]
gi|424972435|ref|ZP_18385774.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1139]
gi|424978996|ref|ZP_18391868.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1123]
gi|425037178|ref|ZP_18441863.1| RNA methyltransferase, TrmH family [Enterococcus faecium 514]
gi|425042262|ref|ZP_18446609.1| RNA methyltransferase, TrmH family [Enterococcus faecium 511]
gi|425048174|ref|ZP_18452096.1| RNA methyltransferase, TrmH family [Enterococcus faecium 509]
gi|431771085|ref|ZP_19559472.1| RNA methyltransferase [Enterococcus faecium E1644]
gi|431772528|ref|ZP_19560866.1| RNA methyltransferase [Enterococcus faecium E2369]
gi|291593557|gb|EFF25097.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1679]
gi|313588731|gb|EFR67576.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133a01]
gi|313591329|gb|EFR70174.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133B]
gi|313595574|gb|EFR74419.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133A]
gi|313598809|gb|EFR77654.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133C]
gi|313640613|gb|EFS05193.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0133a04]
gi|402949014|gb|EJX67107.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1190]
gi|402954240|gb|EJX71878.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1139]
gi|402959659|gb|EJX76897.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1123]
gi|403011992|gb|EJY25265.1| RNA methyltransferase, TrmH family [Enterococcus faecium 514]
gi|403023860|gb|EJY36076.1| RNA methyltransferase, TrmH family [Enterococcus faecium 511]
gi|403031450|gb|EJY43056.1| RNA methyltransferase, TrmH family [Enterococcus faecium 509]
gi|430633865|gb|ELB70015.1| RNA methyltransferase [Enterococcus faecium E1644]
gi|430637607|gb|ELB73606.1| RNA methyltransferase [Enterococcus faecium E2369]
Length = 254
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 85/192 (44%), Gaps = 31/192 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S NP +K K YR L+ G I E + N ++E L
Sbjct: 1 MKEIQSAKNPRIKELKK-LHKKKYREEKAEYLLEGFHLIEEAASSNAEIKE--------L 51
Query: 139 LLDKVEVPEGLD----NISTHTVRVSSVVMKKLSGVQSSESIEAI-ALMKIPTSVFSIDV 193
+ + + E D N T VS VM +S + + + I A+ L T FS
Sbjct: 52 FVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTLTSEDTPDFS--- 108
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
W L+LD +QDPGN+GT++RTA AF GV L G D +S K LR
Sbjct: 109 -------GGW-------LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLR 154
Query: 254 ASRGACFQLPIV 265
+ +G+ + LP++
Sbjct: 155 SMQGSNYHLPVL 166
>gi|304392320|ref|ZP_07374261.1| rRNA methylase [Ahrensia sp. R2A130]
gi|303295424|gb|EFL89783.1| rRNA methylase [Ahrensia sp. R2A130]
Length = 285
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 25/213 (11%)
Query: 76 PYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMD 135
P ++ ITST+NP VK L + R G + G R+ + +D
Sbjct: 7 PGRIEEITSTANPRVKSIRALAMKKN-RDREGLFIAEGEKLARDALDGGW-------HID 58
Query: 136 CLL----LLDKVEVPEGLDNISTHT-VRVSSVVM---KKLSGVQSSESIEAIALMKIPTS 187
LL D EGL+ ++ R V++ K L+ + ++ +A+ + +
Sbjct: 59 TLLYAKSATDDERRREGLETLAVKVRARGGDVLLTNAKVLTAITKRDNSQAVVSVLKSQT 118
Query: 188 VFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPF 247
+ + + C W LVLD ++DPGNLGT++RTA A GV L+ DPF
Sbjct: 119 TDAAKITPQGDTC--W-------LVLDRVRDPGNLGTIIRTADALGVAGVVLVGETTDPF 169
Query: 248 SEKALRASRGACFQLPIVSGSWYHLEVLKDEFQ 280
+A+RA+ G+ F P+V S VL + ++
Sbjct: 170 GLEAVRATMGSLFAKPLVRLSRADYLVLAESWK 202
>gi|169831538|ref|YP_001717520.1| tRNA/rRNA methyltransferase SpoU [Candidatus Desulforudis
audaxviator MP104C]
gi|169638382|gb|ACA59888.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Desulforudis
audaxviator MP104C]
Length = 272
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 38/54 (70%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
++VLDG+QDPGNLGT++RTA A + GV L G D F K +RAS GA F LP
Sbjct: 119 VVVLDGLQDPGNLGTIIRTADACELQGVITLEGTVDLFHPKVVRASAGALFHLP 172
>gi|126664480|ref|ZP_01735464.1| 23S rRNA methyltransferase [Marinobacter sp. ELB17]
gi|126630806|gb|EBA01420.1| 23S rRNA methyltransferase [Marinobacter sp. ELB17]
Length = 262
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 164 MKKLSGVQSSESIEAIALMKIPT---SVFSIDVNQKEADCRSWFPSIH---RILVLDGIQ 217
M +L+ Q+ + I AI +K+P V I ++ R + H + + L +Q
Sbjct: 70 MARLADTQTPQGILAIVPIKVPIIAPEVTPIVTPMAQSQERPAINTQHSPAKAIYLHEVQ 129
Query: 218 DPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
DPGNLGT+LRT F L PG DP++ K +RAS GA F LP+
Sbjct: 130 DPGNLGTILRTLAWFGGFRCLLSPGSVDPYNPKVVRASMGAIFHLPL 176
>gi|269126376|ref|YP_003299746.1| tRNA/rRNA methyltransferase SpoU [Thermomonospora curvata DSM
43183]
gi|268311334|gb|ACY97708.1| tRNA/rRNA methyltransferase (SpoU) [Thermomonospora curvata DSM
43183]
Length = 289
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 99/214 (46%), Gaps = 18/214 (8%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
+ +TS +P VK +L + + +RH L G +RE L E +
Sbjct: 4 RELTSIRSPRVKSARRLAKRT-FRHRERRFLAEGPQAVREALGLPGVLTELFTTAEAES- 61
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
E+ + +RVS VM +L+ +++ L+ + T V DV+ AD
Sbjct: 62 -RHAELVTAAERAGVPVLRVSGEVMAELA-----QTVTPQGLLGVCTFV---DVSL--AD 110
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
S P++ + VL ++DPGN GT+LRTA A V DP++ K +RAS G+
Sbjct: 111 ALSPPPTL--VTVLAHVRDPGNAGTVLRTADAAGCDAVVFTDASVDPYNGKCVRASAGSL 168
Query: 260 FQLPIVSGSWYH--LEVLKDEFQMKLLAGHAGGN 291
F +P+V+G+ + + L+ E + +LA G
Sbjct: 169 FHVPVVAGTRFETLIGALR-ECGLTVLAADGAGE 201
>gi|254502818|ref|ZP_05114969.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
gi|222438889|gb|EEE45568.1| RNA methyltransferase, TrmH family [Labrenzia alexandrii DFL-11]
Length = 280
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 14/218 (6%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SNP VK L R G + G + + ++ +
Sbjct: 13 VKQITSHSNPIVKEIKGLVAQRKLRTQSGLFVAEGLKLATDALSAGWGVRYLALG----- 67
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
PE DN + ++ L S+ + A+ P V + Q
Sbjct: 68 -------PEARDNPAAQKAAATAKARGALILEVSTAVMSAMTRKDNPQMVVGV-YEQNIL 119
Query: 199 DCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
R P + V LD ++DPGNLGT++RT A GV L+ C DPF+ +A+RA+ G
Sbjct: 120 SARDIDPQGTTVWVALDRVRDPGNLGTIIRTVDAVGGSGVMLVGDCTDPFAVEAVRATMG 179
Query: 258 ACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPR 295
+ F +P+ + + L ++ + A H G+ + R
Sbjct: 180 SLFHVPLAKMTKEEFKALAKDWPGTVAATHLKGSVDYR 217
>gi|114331617|ref|YP_747839.1| tRNA/rRNA methyltransferase SpoU [Nitrosomonas eutropha C91]
gi|114308631|gb|ABI59874.1| tRNA/rRNA methyltransferase (SpoU) [Nitrosomonas eutropha C91]
Length = 278
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 91/209 (43%), Gaps = 55/209 (26%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIR------------------- 118
+++ ITS +P K KL++SS R G AL+ G ++
Sbjct: 6 NMRRITSREHPVFKKLFKLQRSSRQRRDDGLALLDGIHLLQSYLASGRIPELLIVSESGG 65
Query: 119 ---EIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSES 175
EI S+ + R DCL+L D + ++S V++
Sbjct: 66 QHAEINQLLGSIGKDFGRADCLMLSD--------------------ALFNQISLVKTPVG 105
Query: 176 IEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWG 235
I + L++IP S+D + +++ C + L+ IQDPGNLG++LR+A+A
Sbjct: 106 I--MTLVRIPRHTRSVD-SYEDSFC----------IALEAIQDPGNLGSILRSAVAAGVK 152
Query: 236 GVFLLPGCCDPFSEKALRASRGACFQLPI 264
FL C D +S K LRA GA F L I
Sbjct: 153 DAFLSSDCADSWSPKTLRAGMGAHFSLRI 181
>gi|329116746|ref|ZP_08245463.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD
2020]
gi|326907151|gb|EGE54065.1| RNA methyltransferase, TrmH family [Streptococcus parauberis NCFD
2020]
gi|456370324|gb|EMF49220.1| rRNA methylase [Streptococcus parauberis KRS-02109]
gi|457096103|gb|EMG26574.1| rRNA methylase [Streptococcus parauberis KRS-02083]
Length = 247
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 93/183 (50%), Gaps = 28/183 (15%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS +NP +K + ++ + +H GS L+ G E ++ ++ D + D
Sbjct: 5 ITSKANPLIK---QTKKLLTKKHRKGSYLIEGWHLFDEAQKAHQEFVHIFLQED---MAD 58
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
K+ EG+ + V++ V+K+L+ + + I IA +K+P+ D+ K
Sbjct: 59 KLRSLEGV-------ILVTNEVLKELTDSPNPQGI--IAEIKMPSPTVLEDMQGK----- 104
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
L+L+ +QDPGNLGTL+RTA A + GVFL D ++ K LR+ +G+ F
Sbjct: 105 --------YLLLEDVQDPGNLGTLIRTADAAGFTGVFLSDKSADLYNPKTLRSMQGSHFH 156
Query: 262 LPI 264
LP+
Sbjct: 157 LPV 159
>gi|393779723|ref|ZP_10367958.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
412 str. F0487]
gi|392609680|gb|EIW92483.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. oral taxon
412 str. F0487]
Length = 283
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 95/213 (44%), Gaps = 28/213 (13%)
Query: 63 INDDADDGRKFALPYHVK-NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIY 121
I A + R+ Y +K NITST NP +K + L + S R G +V G REI
Sbjct: 2 ITKAAYESRQL---YFLKMNITSTQNPLIKKIVLLSEKSRERKKEGICVVEGA---REI- 54
Query: 122 NFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHT------VRVSSVVMKKLSGVQSSES 175
R E ++ LL ++ E L + ++T + +S V +K+S S+E
Sbjct: 55 ---RLALEGGYTLETLLYQPEIFAEEHLLKLLSYTAQRVNPIAISKEVYQKISYRSSTEG 111
Query: 176 IEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWG 235
+ A+ I + D ++ +LV + + PGN+G LLRTA A
Sbjct: 112 VIAL-----------IQTKKHSLDTLAFATDSPLLLVAEAPEKPGNIGALLRTADAANID 160
Query: 236 GVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
V + D ++ +R+S G F +PI +GS
Sbjct: 161 AVIIANPKTDLYNPNIIRSSVGCVFTVPIATGS 193
>gi|422844084|ref|ZP_16890794.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
gi|325685815|gb|EGD27887.1| TrmH family RNA methyltransferase [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 254
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Query: 83 TSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDK 142
TS +NP +K KL+Q YR G L+ G + E + +E L L +
Sbjct: 5 TSVNNPQIKAIGKLQQKK-YREESGYYLIEGFHLVEEALKASVKYREILATEAALSRLAQ 63
Query: 143 VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRS 202
+ GL +++S V LS ++S+ I ++ +NQ E
Sbjct: 64 L----GLAYDEGKLIKISQSVASHLSSTKNSQDI-----------FMTVKINQSE----H 104
Query: 203 WFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
+F S + ++LD + DPGN+GT++RTA A + GV L D ++ K R+ +G+ F L
Sbjct: 105 FFFSYGKWVLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHL 164
Query: 263 PIV 265
++
Sbjct: 165 NLI 167
>gi|81428990|ref|YP_395990.1| tRNA/rRNA methyltransferase [Lactobacillus sakei subsp. sakei 23K]
gi|78610632|emb|CAI55683.1| Putative tRNA/rRNA methyltransferase [Lactobacillus sakei subsp.
sakei 23K]
Length = 253
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
R L+LD +QDPGN+GT++RTA A + GV L G D ++ K LR+ +G+ F LPI G+
Sbjct: 108 RYLLLDAVQDPGNIGTMIRTADAAGFAGVVLGNGSVDLYNPKLLRSMQGSHFHLPIYQGN 167
>gi|424766335|ref|ZP_18193688.1| RNA methyltransferase, TrmH family [Enterococcus faecium TX1337RF]
gi|402411074|gb|EJV43454.1| RNA methyltransferase, TrmH family [Enterococcus faecium TX1337RF]
Length = 254
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 172 SSESIEAIALMKIPTSVFSIDVNQKEAD---CRSWFPSIHRILVLDGIQDPGNLGTLLRT 228
S E ++A++ + P + ++ E W L+LD +QDPGN+GT++RT
Sbjct: 77 SDEVMDAVSDLPTPQGILAVMALTAEGTPDFSGGW-------LLLDNVQDPGNVGTMIRT 129
Query: 229 AMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
A AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 130 ADAFDMAGVLLSKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|421860953|ref|ZP_16293025.1| rRNA methylase [Paenibacillus popilliae ATCC 14706]
gi|410829517|dbj|GAC43462.1| rRNA methylase [Paenibacillus popilliae ATCC 14706]
Length = 239
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 20/120 (16%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPT----SVFSIDVNQKEADCRSWFPSIHRILV 212
+ V+ +++KLS ++ + + IA+++ PT ++F+ D + ++
Sbjct: 46 IGVTDAIIRKLSETEAPQPV--IAVVRKPTLEPDALFNAD--------------LALVVA 89
Query: 213 LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHL 272
+DG+QDPGNLGT++R+A A GV L G D ++ K +R++ G+ F LP+V L
Sbjct: 90 VDGVQDPGNLGTIIRSADAVGATGVVLGKGTVDVYNAKTVRSTMGSLFHLPVVEADLLSL 149
>gi|425061762|ref|ZP_18464967.1| RNA methyltransferase, TrmH family, partial [Enterococcus faecium
503]
gi|403040582|gb|EJY51649.1| RNA methyltransferase, TrmH family, partial [Enterococcus faecium
503]
Length = 268
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 172 SSESIEAIALMKIPTSVFSIDVNQKEAD---CRSWFPSIHRILVLDGIQDPGNLGTLLRT 228
S E ++A++ + P + ++ E W L+LD +QDPGN+GT++RT
Sbjct: 91 SDEVMDAVSDLPTPQGILAVMALTAEGTPDFSGGW-------LLLDNVQDPGNVGTMIRT 143
Query: 229 AMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
A AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 144 ADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 180
>gi|378824147|ref|ZP_09846684.1| RNA methyltransferase, TrmH family [Sutterella parvirubra YIT
11816]
gi|378597034|gb|EHY30385.1| RNA methyltransferase, TrmH family [Sutterella parvirubra YIT
11816]
Length = 266
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 97/218 (44%), Gaps = 30/218 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S +NP +K KL + + G+ L+ G I+ +L+ + +D +LL +
Sbjct: 6 IESDANPRMKRWRKLAKEARAVKREGATLIEG------IHLAESALENPKIAVDAVLLSE 59
Query: 142 KVEVPEGLDN----ISTHTVRV---SSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
K E LD + RV + + +L+ V+ I + M +P + ++D
Sbjct: 60 KTATDEALDLAEALMREKNARVYVLADRLYDELAPVEHGVGI--MCEMPVPKT-DALDFG 116
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ +L LDGIQD GN GTL+RTA+A + + PG ++ K LRA
Sbjct: 117 SAD------------VLYLDGIQDAGNAGTLIRTAVAAGFRTIAASPGTAQLWAPKVLRA 164
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNE 292
GA F I G E + F+ ++LA A G E
Sbjct: 165 GMGAHFGARIFEG--VTPEAFRGAFKGQILAADARGGE 200
>gi|315225471|ref|ZP_07867284.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287]
gi|420159699|ref|ZP_14666497.1| RNA methyltransferase, TrmH family [Capnocytophaga ochracea str.
Holt 25]
gi|314944569|gb|EFS96605.1| 23S rRNA methyltransferase [Capnocytophaga ochracea F0287]
gi|394761750|gb|EJF44078.1| RNA methyltransferase, TrmH family [Capnocytophaga ochracea str.
Holt 25]
Length = 283
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 25/199 (12%)
Query: 77 YHVK-NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMD 135
Y +K NITST NP +K + L + S R G +V G REI R E ++
Sbjct: 13 YFLKMNITSTQNPLIKKIVLLSEKSRERKKVGICVVEGA---REI----RLALEGGYTLE 65
Query: 136 CLLLLDKVEVPEGLDNISTHT------VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVF 189
LL ++ E L + ++T + +S V +K+S S+E + A+
Sbjct: 66 TLLYQPEIFAEEHLQRLLSYTAQKANPIAISKEVYQKISYRSSTEGVIAL---------- 115
Query: 190 SIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
I + D ++ +LV + + PGN+G LLRTA A V + D ++
Sbjct: 116 -IQTKKHSLDTLAFATDSPLLLVAEAPEKPGNIGALLRTADAANIDAVIIANPKTDLYNP 174
Query: 250 KALRASRGACFQLPIVSGS 268
+R+S G F +PI +GS
Sbjct: 175 NIIRSSVGCVFTVPIATGS 193
>gi|290953872|ref|ZP_06558493.1| rRNA methyltransferase [Francisella tularensis subsp. holarctica
URFT1]
Length = 200
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
ILVLD IQDPGN+GT+LRTA+A V L+ G DPF+ KA+ A GA F L
Sbjct: 55 ILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIMAGMGAQFSL 107
>gi|241202807|ref|YP_002973903.1| tRNA/rRNA methyltransferase SpoU [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240856697|gb|ACS54364.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 286
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 110/261 (42%), Gaps = 47/261 (18%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L S R G+ L G I + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTNKKS-REESGTFLAEGLKLIIDAIELGWAIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ-- 195
+ + ++ ++ TV +V++ S + I +I P V I +
Sbjct: 67 VYAKAAKGKPLVEQMAAKTVASGGLVLE-----VSEKVIASITRRDNPQMVVGIFEQRWT 121
Query: 196 -----KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
+ +D +W + LD ++DPGNLGT++RTA A G+ LL DPFS +
Sbjct: 122 PLKGIRLSDGETW-------VALDRVRDPGNLGTIIRTADAAGASGIILLGETTDPFSLE 174
Query: 251 ALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGH-AG------------------GN 291
+RA+ G+ F +P+ + + + ++A H AG GN
Sbjct: 175 TVRATMGSVFAVPVARATPEEFIAWRKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGN 234
Query: 292 EEPRQVLQLSQELADSFAGVP 312
E+ QL++E AD+ A +P
Sbjct: 235 EQSGLPEQLARE-ADALARIP 254
>gi|52081372|ref|YP_080163.1| RNA methylase YsgA [Bacillus licheniformis DSM 13 = ATCC 14580]
gi|319647279|ref|ZP_08001501.1| YsgA protein [Bacillus sp. BT1B_CT2]
gi|404490248|ref|YP_006714354.1| tRNA/rRNA methyltransferase YsgA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|423683351|ref|ZP_17658190.1| RNA methylase YsgA [Bacillus licheniformis WX-02]
gi|52004583|gb|AAU24525.1| putative RNA methylase YsgA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52349249|gb|AAU41883.1| tRNA/rRNA methyltransferase YsgA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|317390626|gb|EFV71431.1| YsgA protein [Bacillus sp. BT1B_CT2]
gi|383440125|gb|EID47900.1| RNA methylase YsgA [Bacillus licheniformis WX-02]
Length = 248
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 11/99 (11%)
Query: 170 VQSSESIEAIALMKIPTSVFSIDVNQKEADCR---SWFPSIHRILVLDGIQDPGNLGTLL 226
V S+++ AIA + P +V ++ CR S ++L+ D +QDPGNLGT++
Sbjct: 71 VLSADAFSAIAETETPQAVAAV--------CRMPESGPFQYEKLLLADAVQDPGNLGTII 122
Query: 227 RTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
RTA A V + G DP++ K LR+++G+ F +PI+
Sbjct: 123 RTADAAGIDAVVIGQGTVDPYNAKTLRSAQGSHFHIPIL 161
>gi|374311623|ref|YP_005058053.1| tRNA/rRNA methyltransferase SpoU [Granulicella mallensis MP5ACTX8]
gi|358753633|gb|AEU37023.1| tRNA/rRNA methyltransferase (SpoU) [Granulicella mallensis
MP5ACTX8]
Length = 276
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
LVL+ IQDPGN GTL+R+A AF V++ PG + ++ KA+RAS G+ F++P+V G
Sbjct: 119 LVLEDIQDPGNFGTLIRSAEAFSVSRVYVTPGTVNQWNPKAMRASAGSVFRMPVVRG 175
>gi|329119707|ref|ZP_08248387.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464156|gb|EGF10461.1| TrmH family RNA methyltransferase [Neisseria bacilliformis ATCC
BAA-1200]
Length = 259
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 97/226 (42%), Gaps = 28/226 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S N +KH KL S+ YR + ++ G + + LQ +
Sbjct: 1 MKQIASPHNTQLKHLAKLGVSAKYRRQYRQTVLEGA------HLLDALLQSGAQPQQVFI 54
Query: 139 LLDKVEVPEGLDNI----STHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
++ PE + S +T V ++ K S + I ++L++IP +
Sbjct: 55 AQSRLHTPETQSLLARLPSENTAAVEDRLLAKASALSDGGGI--LSLVEIPETA----AP 108
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ DC +VL+ IQDPGN+GT+LR+A A + GC D +S K LRA
Sbjct: 109 PQNGDC----------VVLERIQDPGNIGTILRSAAAAGVRQIIAGEGCADLWSPKVLRA 158
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQL 300
+ GA F L + S +L V + ++ L A N P L L
Sbjct: 159 AMGAHFLLRLHPAS--NLAVWRQTYREPLFATALTANSTPLYRLNL 202
>gi|163792968|ref|ZP_02186944.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
gi|159181614|gb|EDP66126.1| tRNA/rRNA methyltransferase (SpoU) [alpha proteobacterium BAL199]
Length = 270
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L L+GI+DPGNLG+++R+A AF GV L+ DPFS +A+RAS G+ +P++
Sbjct: 125 LALEGIRDPGNLGSIIRSADAFAVAGVLLIGNTVDPFSTEAVRASMGSIVNVPLI 179
>gi|422344052|ref|ZP_16424979.1| hypothetical protein HMPREF9432_01039 [Selenomonas noxia F0398]
gi|355377800|gb|EHG25009.1| hypothetical protein HMPREF9432_01039 [Selenomonas noxia F0398]
Length = 279
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+VLD +QDPGN+GT+LRTA A GV LL G D +S K +RA+ GA F +P G
Sbjct: 129 IVLDRVQDPGNVGTILRTADAAGASGVILLRGSADVYSGKVVRATMGALFHVPFAEG 185
>gi|430822804|ref|ZP_19441379.1| RNA methyltransferase [Enterococcus faecium E0120]
gi|430865483|ref|ZP_19481118.1| RNA methyltransferase [Enterococcus faecium E1574]
gi|431739634|ref|ZP_19528554.1| RNA methyltransferase [Enterococcus faecium E2039]
gi|430442733|gb|ELA52754.1| RNA methyltransferase [Enterococcus faecium E0120]
gi|430552830|gb|ELA92547.1| RNA methyltransferase [Enterococcus faecium E1574]
gi|430604250|gb|ELB41741.1| RNA methyltransferase [Enterococcus faecium E2039]
Length = 254
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 172 SSESIEAIALMKIPTSVFSIDVNQKEAD---CRSWFPSIHRILVLDGIQDPGNLGTLLRT 228
S E ++A++ + P + ++ E W L+LD +QDPGN+GT++RT
Sbjct: 77 SDEVMDAVSDLPTPQGILAVMALTAEGTPDFSGGW-------LLLDNVQDPGNVGTMIRT 129
Query: 229 AMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
A AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 130 ADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|257455361|ref|ZP_05620596.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
gi|257447323|gb|EEV22331.1| RNA methyltransferase, TrmH family [Enhydrobacter aerosaccus SK60]
Length = 258
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 93/204 (45%), Gaps = 27/204 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRM-DCLLLL 140
ITS NP +K L S R G ++ GT + E Y N L TV + + L
Sbjct: 3 ITSKDNPTIKTTHALLTQSRQRKKLGKTVIEGT-HLLEAY-LNAGLTPETVIVSESGLHN 60
Query: 141 DKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK-EAD 199
D++ G N T+ VS + K++ + ES+ +A++ +P +D NQ +D
Sbjct: 61 DEINALLGRLN-QVKTLTVSDNLYKEIRTL--GESLPIMAMIDMP----HLDFNQPITSD 113
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
C L+++G+QD GNLGTL RTA A + G +S K LRA GA
Sbjct: 114 C----------LIINGVQDNGNLGTLFRTASAVGIKTIVCTMGTASAWSPKTLRAGMGAN 163
Query: 260 FQLPIVSGSWYHLEVLKDEFQMKL 283
F L I G + DE MK+
Sbjct: 164 FSLTIFEG------ISVDEILMKV 181
>gi|85057856|ref|YP_456772.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
phytoplasma AYWB]
gi|84789961|gb|ABC65693.1| 23S rRNA methyltransferase [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 234
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
+ILVLD IQDP NLG L+R+A AF + VF D + EK +R+S+GA F L + GS
Sbjct: 93 KILVLDDIQDPANLGVLMRSASAFGFNQVFASFHSADFYHEKTIRSSQGALFSLSLKRGS 152
>gi|345861091|ref|ZP_08813367.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Desulfosporosinus sp. OT]
gi|344325819|gb|EGW37321.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Desulfosporosinus sp. OT]
Length = 264
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+L+LDGIQDPGNLGT+LRTA+A V L PG D ++ K LR++ GA F L ++ G
Sbjct: 116 LLILDGIQDPGNLGTILRTALASGVRYVCLTPGTVDLYNPKVLRSTMGALFSLVLLPG 173
>gi|257886892|ref|ZP_05666545.1| RNA methyltransferase [Enterococcus faecium 1,141,733]
gi|257890478|ref|ZP_05670131.1| RNA methyltransferase [Enterococcus faecium 1,231,410]
gi|257893082|ref|ZP_05672735.1| RNA methyltransferase [Enterococcus faecium 1,231,408]
gi|260558938|ref|ZP_05831125.1| RNA methyltransferase [Enterococcus faecium C68]
gi|293559777|ref|ZP_06676297.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162]
gi|293568626|ref|ZP_06679941.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071]
gi|314950192|ref|ZP_07853477.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0082]
gi|383329257|ref|YP_005355141.1| RNA methyltransferase [Enterococcus faecium Aus0004]
gi|424791877|ref|ZP_18218178.1| RNA methyltransferase, TrmH family [Enterococcus faecium V689]
gi|424847654|ref|ZP_18272208.1| RNA methyltransferase, TrmH family [Enterococcus faecium R501]
gi|424954540|ref|ZP_18369435.1| RNA methyltransferase, TrmH family [Enterococcus faecium R494]
gi|424985305|ref|ZP_18397788.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV69]
gi|424987656|ref|ZP_18400023.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV38]
gi|424991501|ref|ZP_18403648.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV26]
gi|425008965|ref|ZP_18420011.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV1]
gi|425014831|ref|ZP_18425485.1| RNA methyltransferase, TrmH family [Enterococcus faecium E417]
gi|425040429|ref|ZP_18444902.1| RNA methyltransferase, TrmH family [Enterococcus faecium 513]
gi|431752242|ref|ZP_19540925.1| RNA methyltransferase [Enterococcus faecium E2620]
gi|431757086|ref|ZP_19545717.1| RNA methyltransferase [Enterococcus faecium E3083]
gi|431780946|ref|ZP_19569104.1| RNA methyltransferase [Enterococcus faecium E4389]
gi|257822946|gb|EEV49878.1| RNA methyltransferase [Enterococcus faecium 1,141,733]
gi|257826838|gb|EEV53464.1| RNA methyltransferase [Enterococcus faecium 1,231,410]
gi|257829461|gb|EEV56068.1| RNA methyltransferase [Enterococcus faecium 1,231,408]
gi|260075046|gb|EEW63361.1| RNA methyltransferase [Enterococcus faecium C68]
gi|291588586|gb|EFF20419.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1071]
gi|291606260|gb|EFF35674.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1162]
gi|313643502|gb|EFS08082.1| RNA 2'-O ribose methyltransferase substrate binding [Enterococcus
faecium TX0082]
gi|378938951|gb|AFC64023.1| RNA methyltransferase [Enterococcus faecium Aus0004]
gi|402918391|gb|EJX39088.1| RNA methyltransferase, TrmH family [Enterococcus faecium V689]
gi|402919002|gb|EJX39644.1| RNA methyltransferase, TrmH family [Enterococcus faecium R501]
gi|402936533|gb|EJX55704.1| RNA methyltransferase, TrmH family [Enterococcus faecium R494]
gi|402966221|gb|EJX82875.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV69]
gi|402973892|gb|EJX89977.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV38]
gi|402976653|gb|EJX92527.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV26]
gi|402991029|gb|EJY05861.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV1]
gi|402997598|gb|EJY11914.1| RNA methyltransferase, TrmH family [Enterococcus faecium E417]
gi|403012880|gb|EJY26047.1| RNA methyltransferase, TrmH family [Enterococcus faecium 513]
gi|430613733|gb|ELB50732.1| RNA methyltransferase [Enterococcus faecium E2620]
gi|430619375|gb|ELB56202.1| RNA methyltransferase [Enterococcus faecium E3083]
gi|430638468|gb|ELB74403.1| RNA methyltransferase [Enterococcus faecium E4389]
Length = 254
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 172 SSESIEAIALMKIPTSVFSIDVNQKEAD---CRSWFPSIHRILVLDGIQDPGNLGTLLRT 228
S E ++A++ + P + ++ E W L+LD +QDPGN+GT++RT
Sbjct: 77 SDEVMDAVSDLPTPQGILAVMALTAEGTPDFSGGW-------LLLDNVQDPGNVGTMIRT 129
Query: 229 AMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
A AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 130 ADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|431762344|ref|ZP_19550906.1| RNA methyltransferase [Enterococcus faecium E3548]
gi|430625036|gb|ELB61686.1| RNA methyltransferase [Enterococcus faecium E3548]
Length = 254
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 172 SSESIEAIALMKIPTSVFSIDVNQKEAD---CRSWFPSIHRILVLDGIQDPGNLGTLLRT 228
S E ++A++ + P + ++ E W L+LD +QDPGN+GT++RT
Sbjct: 77 SDEVMDAVSDLPTPQGILAVMALTAEGTPEFSGGW-------LLLDNVQDPGNVGTMIRT 129
Query: 229 AMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
A AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 130 ADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|265983327|ref|ZP_06096062.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
gi|306839597|ref|ZP_07472401.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653]
gi|264661919|gb|EEZ32180.1| tRNA/rRNA methyltransferase [Brucella sp. 83/13]
gi|306405295|gb|EFM61570.1| tRNA/rRNA methyltransferase [Brucella sp. NF 2653]
Length = 297
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 26/245 (10%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP VK L +R G L G + + E+ R+ L
Sbjct: 26 QVKEVTSLANPIVKDLRSL-ALKKFRDQQGVFLAEGLKLVIDAL-------EQDWRIKTL 77
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + + ++ ++ T +V++ V I AI P V + Q+
Sbjct: 78 VFAKSGKGNKTVEQVAARTFAKGGLVLEVTEKV-----ISAITRRDNPQMVAGV-FEQQY 131
Query: 198 ADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
S P + + V LD ++DPGNLGT++RTA A GV L+ DP+S + +RA+
Sbjct: 132 HQLASLKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQ--------VLQLSQE---LA 305
G+ F +P+ S + F ++ H G + R +L + E L
Sbjct: 192 GSVFSVPLYRASEADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLP 251
Query: 306 DSFAG 310
DS AG
Sbjct: 252 DSLAG 256
>gi|150395253|ref|YP_001325720.1| tRNA/rRNA methyltransferase SpoU [Sinorhizobium medicae WSM419]
gi|150026768|gb|ABR58885.1| tRNA/rRNA methyltransferase (SpoU) [Sinorhizobium medicae WSM419]
Length = 286
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 19/243 (7%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L Q +R S + G + + + R+ L
Sbjct: 15 QVKEVTSLTNPIIKDIRALAQKK-HRDETRSFIAEGLKLVIDALDLG-------WRIRTL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ ++ TV +V++ S + I AI P V I Q+
Sbjct: 67 VYAKAAKGKPQVEQVAAKTVARGGLVLEV-----SEKVISAITRRDNPQMVIGI-FEQRY 120
Query: 198 ADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ P V LD ++DPGNLGT++RTA A G+ L+ DPFS + +RA+
Sbjct: 121 QPLKDIHPREGETYVALDRVRDPGNLGTIIRTADAAGASGIVLVGETTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQE----LADSFAGVP 312
G+ F +P+ + + ++++A H G+ + R + S+ + + AG+P
Sbjct: 181 GSVFAMPLARANAEDFLRWQRAAGVQVVATHLAGSVDYRTIDYNSKPVVLLMGNEQAGLP 240
Query: 313 LCL 315
+ L
Sbjct: 241 VEL 243
>gi|17546138|ref|NP_519540.1| tRNA/rRNA methyltransferase [Ralstonia solanacearum GMI1000]
gi|17428434|emb|CAD15121.1| probable trna/rrna methyltransferase protein [Ralstonia
solanacearum GMI1000]
Length = 259
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 43/219 (19%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+ITS N KH L S+ R G +++ G I+ L V CL+
Sbjct: 1 MKHITSRDNAVFKHLKALSGSTQQRRRAGQSVLDG------IHLVAAYLDAGHVPAQCLV 54
Query: 139 ------------LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPT 186
LL +V+ P+G+ V ++ + +L+ V + I+ +AL++ P
Sbjct: 55 SERHLAHPEVAPLLARVD-PQGI-------VLLADSLFAQLTTVVNG--IDLMALIETPE 104
Query: 187 SVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDP 246
++ E DC ++LDGIQD GN+G++LR A A VF+ GC
Sbjct: 105 GHLP---HRIEHDC----------VILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFA 151
Query: 247 FSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
+S K LRA+ GA F L +V + E + + LLA
Sbjct: 152 WSAKTLRAAMGAHFHLNVVEHCTF--ESVHARLHVPLLA 188
>gi|386759427|ref|YP_006232643.1| putative RNA methylase [Bacillus sp. JS]
gi|384932709|gb|AFI29387.1| putative RNA methylase [Bacillus sp. JS]
Length = 248
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 40/194 (20%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+I S N VK KL + R + L+ G + E +++E +L
Sbjct: 1 MKHIESAKNQKVKDWKKL-HTKKERTKTNTFLIEGEHLVEEALKSPGTVKE-------IL 52
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQ----SSESIEAIALMKIPTSVFSIDVN 194
+ D+ ++P L+ +G+Q S ++ A+ + P + ++
Sbjct: 53 VKDETKIPSDLE-----------------AGIQCYVLSEDAFSAVTETETPQQIAAV--- 92
Query: 195 QKEADC---RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
C + ++L++D +QDPGNLGT++RTA A V L G D F+ K
Sbjct: 93 -----CHMPEEQLATARKMLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKT 147
Query: 252 LRASRGACFQLPIV 265
LR+++G+ F +P+V
Sbjct: 148 LRSAQGSHFHIPVV 161
>gi|336114611|ref|YP_004569378.1| tRNA/rRNA methyltransferase SpoU [Bacillus coagulans 2-6]
gi|335368041|gb|AEH53992.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus coagulans 2-6]
Length = 245
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 27/182 (14%)
Query: 87 NPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVP 146
NP VKH KL + R + L+ G + E +L+E V +++ + V++P
Sbjct: 3 NPQVKHWKKL-AAKKEREKTFTYLLEGFHLVEE------ALKEEVVAE--IIVEEGVDLP 53
Query: 147 EGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKI-PTSVFSIDVNQKEADCRSWFP 205
+ + V+ + K L+ ++++ I A+ MK P+ +
Sbjct: 54 NRWNTEGVPVITVTHEISKTLADTETTQGIFAVCRMKKQPSKIIG--------------- 98
Query: 206 SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
R L++D +QDPGN GT++RTA A + V G DP+S K LRA++G+ + ++
Sbjct: 99 --RRYLLIDAVQDPGNTGTMIRTADAAGFDAVIFGKGTADPYSPKVLRAAQGSHLHVGLL 156
Query: 266 SG 267
G
Sbjct: 157 KG 158
>gi|335040336|ref|ZP_08533467.1| RNA methyltransferase, TrmH family, group 3 [Caldalkalibacillus
thermarum TA2.A1]
gi|334179812|gb|EGL82446.1| RNA methyltransferase, TrmH family, group 3 [Caldalkalibacillus
thermarum TA2.A1]
Length = 271
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Query: 201 RSWFPSIHR-------ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
R+ FP + +L++D IQDPGNLGTL RTA+A V L G DP + K LR
Sbjct: 100 RAQFPMLEEYLDKGALLLLVDSIQDPGNLGTLFRTALAAGVDAVMLGKGTTDPLAGKVLR 159
Query: 254 ASRGACFQLP 263
+++GA F LP
Sbjct: 160 STQGAVFHLP 169
>gi|124023679|ref|YP_001017986.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str. MIT
9303]
gi|123963965|gb|ABM78721.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9303]
Length = 275
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
+L LD +QDPGNLGTLLRTA+A + V+L G DP S K LRAS GA QLP
Sbjct: 111 VLALDRLQDPGNLGTLLRTALAAEVEAVWLASG-ADPLSPKVLRASAGAILQLP 163
>gi|424888935|ref|ZP_18312538.1| rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM2012]
gi|393174484|gb|EJC74528.1| rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM2012]
Length = 286
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 111/263 (42%), Gaps = 51/263 (19%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L S R G+ L G + + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTNKKS-REESGTFLAEGLKLVIDAIELGWTIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI------ 191
+ + ++ ++ TV +V++ S + I +I P V I
Sbjct: 67 VYAKAAKGKPLVEQMAARTVASGGLVLE-----VSEKVIASITRRDNPQMVVGIFEQRWK 121
Query: 192 ---DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFS 248
D+ +E + +W + LD ++DPGNLGT++RTA A G+ L+ DPFS
Sbjct: 122 SLKDIRPREGE--TW-------VALDRVRDPGNLGTIIRTADAAGASGIILIGETTDPFS 172
Query: 249 EKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGH-AG------------------ 289
+ +RA+ G+ F +P+ + + + ++A H AG
Sbjct: 173 LETVRATMGSVFAVPVARATPEEFIAWRKSAGVSVVATHLAGAVDYRTIDYRNKPVVLLM 232
Query: 290 GNEEPRQVLQLSQELADSFAGVP 312
GNE+ QL++E AD+ A +P
Sbjct: 233 GNEQSGLPEQLARE-ADALARIP 254
>gi|417110212|ref|ZP_11963547.1| rRNA methylase protein [Rhizobium etli CNPAF512]
gi|327188566|gb|EGE55776.1| rRNA methylase protein [Rhizobium etli CNPAF512]
Length = 286
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 111/263 (42%), Gaps = 51/263 (19%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L S R G+ L G + + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTNKKS-REESGTFLAEGLKLVIDAIELGWTIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI------ 191
+ + ++ ++ TV +V++ S + I +I P V I
Sbjct: 67 VYAKAAKGKPLVEQMAAKTVASGGLVLE-----VSEKVIGSITRRDNPQMVVGIFDQRWK 121
Query: 192 ---DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFS 248
D+ +E + +W + LD ++DPGNLGT++RTA A GV L+ DPFS
Sbjct: 122 PLKDIRPREGE--TW-------VALDRVRDPGNLGTIIRTADAAGASGVILVGEATDPFS 172
Query: 249 EKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGH-AG------------------ 289
+ +RA+ G+ F +P+ + + + ++A H AG
Sbjct: 173 LETVRATMGSVFAVPVARATPEEFLAWRKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLM 232
Query: 290 GNEEPRQVLQLSQELADSFAGVP 312
GNE+ QL++E AD+ A +P
Sbjct: 233 GNEQSGLPEQLAKE-ADALARIP 254
>gi|88802844|ref|ZP_01118371.1| putative rRNA methylase [Polaribacter irgensii 23-P]
gi|88781702|gb|EAR12880.1| putative rRNA methylase [Polaribacter irgensii 23-P]
Length = 265
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 37/201 (18%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREI-------YNFNRSLQERT 131
+K I+S N ++K LKL++ S R G ++ G REI YNF
Sbjct: 1 MKEISSIHNSYIKELLKLQEKSRERKKKGLFIIEGK---REISLAVAANYNF-------- 49
Query: 132 VRMDCLLLLDKV----EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTS 187
D +L +D + EV L N + + +++S + +KL+ S+E + A+ K
Sbjct: 50 ---DTVLYVDDLICEKEVLH-LFNENVNRIQISKEIYQKLAYRASTEGVIAVTKAK---- 101
Query: 188 VFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPF 247
D + + + P ILV +GI+ PGN+G LLRTA A VF+ D +
Sbjct: 102 ----DFSLEHIKFVTKNP---LILVAEGIEKPGNIGALLRTADAANVAAVFIANPKSDLY 154
Query: 248 SEKALRASRGACFQLPIVSGS 268
+ +RAS G F I G+
Sbjct: 155 NPNIIRASIGCVFTTQIAVGT 175
>gi|319781460|ref|YP_004140936.1| tRNA/rRNA methyltransferase SpoU [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167348|gb|ADV10886.1| tRNA/rRNA methyltransferase (SpoU) [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 285
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 94/236 (39%), Gaps = 31/236 (13%)
Query: 71 RKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQER 130
R P VK +TS +NP VK L Q +R + + G + I + Q R
Sbjct: 4 RHAGAPGQVKEVTSLANPLVKDIKALAQKK-FRDQQNAFMAEGLKLV--IDALDLGWQIR 60
Query: 131 TVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS 190
T L+ ++ ++ TV +V++ S + + AI P V
Sbjct: 61 T-----LVFAKAGRGNAAVEKVAARTVAAGGMVLE-----VSEKVLVAITRRDNPQMVVG 110
Query: 191 I---------DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLP 241
+ DV D W + LD ++DPGNLGT++RT A GV L+
Sbjct: 111 VFSQKFLALKDVRADNGDV--W-------VALDRVRDPGNLGTVIRTVDAVGAKGVILVG 161
Query: 242 GCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
DPFS + +RA+ G+ F +P+ + + F + H G + R V
Sbjct: 162 DTTDPFSVETVRATMGSIFAVPVAKATTEAFLAWRGGFSGLVAGTHLKGAVDYRSV 217
>gi|303258070|ref|ZP_07344078.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium
1_1_47]
gi|330998717|ref|ZP_08322446.1| RNA methyltransferase, TrmH family [Parasutterella
excrementihominis YIT 11859]
gi|302859089|gb|EFL82172.1| RNA methyltransferase, TrmH family [Burkholderiales bacterium
1_1_47]
gi|329576456|gb|EGG57968.1| RNA methyltransferase, TrmH family [Parasutterella
excrementihominis YIT 11859]
Length = 268
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 88/185 (47%), Gaps = 16/185 (8%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS +NP +K L Q S G +L G RE+ + +++ +R +
Sbjct: 6 ITSAANPSIKLAKNLAQHSRAARKEGLSLAEGIHLARELLSHPELVRKVFLREGAEKNFE 65
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
E+ + ++ V++ S + +S V +S I + ++IP +K+ D
Sbjct: 66 ISEILQKYLSLKISVVQLPSQIYASISPVDTSAGI--VCEIRIPEE----GKIKKDED-- 117
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
W + LDG+QDPGN+GT+LR+A+A + L P C +S K LRA+ GA F
Sbjct: 118 -W-------IYLDGVQDPGNVGTILRSALASGVTNIALSPQCAYVWSPKVLRAAMGAHFF 169
Query: 262 LPIVS 266
I+S
Sbjct: 170 CNIIS 174
>gi|302672120|ref|YP_003832080.1| rRNA methylase SpoU family protein [Butyrivibrio proteoclasticus
B316]
gi|302396593|gb|ADL35498.1| rRNA methylase SpoU family [Butyrivibrio proteoclasticus B316]
Length = 268
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS +N VK + + S R ++ G +RE LQ R V + LD
Sbjct: 2 ITSVNNDRVKQVVNYIEKSKARREDDVFVIEGMKMLREA----PVLQVREVYV-TTRFLD 56
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID-----VNQK 196
K + VS VMKK++ Q+ + + A+ I ++++ NQ
Sbjct: 57 KASEEDKEILWRYGAEEVSDEVMKKMAATQTPQGVIAV----ISQYHYTMEEVLEGYNQD 112
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ + ILVL+ IQDPGN+GT+LR+ G+ L G D ++ K +R++
Sbjct: 113 DEGAKPL------ILVLENIQDPGNVGTMLRSGEGAGVTGIILSKGSADIYNPKVIRSTM 166
Query: 257 GACFQLPIV 265
G+ F++P +
Sbjct: 167 GSIFRMPFI 175
>gi|326201776|ref|ZP_08191647.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
papyrosolvens DSM 2782]
gi|325988376|gb|EGD49201.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
papyrosolvens DSM 2782]
Length = 265
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 85/160 (53%), Gaps = 15/160 (9%)
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESI------EAIALMKIPTSVFSID 192
++ KV V + L+ ++ S +++K+ GV S S+ + ++ + P + ++
Sbjct: 47 VISKVIVSDKLEGLNG-----GSELIEKVKGVCSDISLVPEKLFKEVSDTQTPQGILAV- 100
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
+ + + D + + +++LD +QDPGN GT++RTA A V + GC D +S K L
Sbjct: 101 LEKNQFDFQEVIEKGNSVVILDCLQDPGNAGTIIRTADAAGISAVLMSKGCVDLYSPKVL 160
Query: 253 RASRGACFQLPIVSG--SWYHLEVLKDEFQMKLLAGHAGG 290
R++ G+ F +PI G +++LK + K++A H G
Sbjct: 161 RSTMGSVFHVPIFEGLNITETIQLLKQK-GYKVIASHLSG 199
>gi|261209460|ref|ZP_05923823.1| RNA methyltransferase [Enterococcus faecium TC 6]
gi|289566871|ref|ZP_06447279.1| RNA methyltransferase [Enterococcus faecium D344SRF]
gi|260076588|gb|EEW64352.1| RNA methyltransferase [Enterococcus faecium TC 6]
gi|289161320|gb|EFD09212.1| RNA methyltransferase [Enterococcus faecium D344SRF]
Length = 254
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|219850021|ref|YP_002464454.1| tRNA/rRNA methyltransferase SpoU [Chloroflexus aggregans DSM 9485]
gi|219544280|gb|ACL26018.1| tRNA/rRNA methyltransferase (SpoU) [Chloroflexus aggregans DSM
9485]
Length = 257
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 38/59 (64%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSW 269
L+LD IQDPGN+GTLLR+A A G V PG DPFS K RA+ GA F +P+ W
Sbjct: 113 LILDEIQDPGNVGTLLRSAAAAGVGLVICAPGTADPFSPKVARAAMGAHFIVPLRLLPW 171
>gi|306842563|ref|ZP_07475214.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
gi|306287419|gb|EFM58899.1| tRNA/rRNA methyltransferase [Brucella sp. BO2]
Length = 297
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 103/245 (42%), Gaps = 26/245 (10%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP VK L +R G L G + + E+ R+ L
Sbjct: 26 QVKEVTSLANPIVKDLRSL-ALKKFRDQQGVFLAEGLKLVIDAL-------EQDWRIKTL 77
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + + ++ ++ T +V++ V I AI P V + Q+
Sbjct: 78 VFAKSGKGNKTVEQVAARTFAKGGLVLEVTEKV-----ISAITRRDNPQMVAGV-FEQQY 131
Query: 198 ADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
S P + + + LD ++DPGNLGT++RTA A GV L+ DP+S + +RA+
Sbjct: 132 HQLASLKPKGNDVYIALDRVRDPGNLGTIIRTADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQ--------VLQLSQE---LA 305
G+ F +P+ S + F ++ H G + R +L + E L
Sbjct: 192 GSVFSVPLYRASEADFLNWRKGFSGLVVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLP 251
Query: 306 DSFAG 310
DS AG
Sbjct: 252 DSLAG 256
>gi|306844418|ref|ZP_07477008.1| tRNA/rRNA methyltransferase [Brucella inopinata BO1]
gi|306275231|gb|EFM56981.1| tRNA/rRNA methyltransferase [Brucella inopinata BO1]
Length = 297
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 103/245 (42%), Gaps = 26/245 (10%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP VK L +R G L G + + E+ R+ L
Sbjct: 26 QVKEVTSLANPIVKDLRSL-ALKKFRDQQGVFLAEGLKLVIDAL-------EQDWRIKTL 77
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + + ++ ++ T +V++ V I AI P V + Q+
Sbjct: 78 VFAKSGKGNKTVEQVAARTFAKGGLVLEVTEKV-----ISAITRRDNPQMVAGV-FEQQY 131
Query: 198 ADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
S P + + + LD ++DPGNLGT++RTA A GV L+ DP+S + +RA+
Sbjct: 132 HQLASLKPKGNDVYIALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQ--------VLQLSQE---LA 305
G+ F +P+ S + F ++ H G + R +L + E L
Sbjct: 192 GSVFSVPLYRASEADFLNWRKGFSGLIVGTHLKGAVDYRTIPYANKPVILMMGNEQQGLP 251
Query: 306 DSFAG 310
DS AG
Sbjct: 252 DSLAG 256
>gi|257883080|ref|ZP_05662733.1| RNA methyltransferase [Enterococcus faecium 1,231,502]
gi|416135642|ref|ZP_11598539.1| Putative tRNA/rRNA methyltransferase [Enterococcus faecium E4452]
gi|424797252|ref|ZP_18222865.1| RNA methyltransferase, TrmH family [Enterococcus faecium S447]
gi|424858042|ref|ZP_18282096.1| RNA methyltransferase, TrmH family [Enterococcus faecium R499]
gi|424958254|ref|ZP_18372910.1| RNA methyltransferase, TrmH family [Enterococcus faecium R446]
gi|424961449|ref|ZP_18375892.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1986]
gi|424967876|ref|ZP_18381551.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1140]
gi|424995372|ref|ZP_18407255.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV168]
gi|424999412|ref|ZP_18411029.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV165]
gi|425001750|ref|ZP_18413238.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV161]
gi|425004443|ref|ZP_18415751.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV102]
gi|425011101|ref|ZP_18422018.1| RNA methyltransferase, TrmH family [Enterococcus faecium E422]
gi|425017206|ref|ZP_18427728.1| RNA methyltransferase, TrmH family [Enterococcus faecium C621]
gi|257818738|gb|EEV46066.1| RNA methyltransferase [Enterococcus faecium 1,231,502]
gi|364092114|gb|EHM34515.1| Putative tRNA/rRNA methyltransferase [Enterococcus faecium E4452]
gi|402921489|gb|EJX41933.1| RNA methyltransferase, TrmH family [Enterococcus faecium S447]
gi|402927428|gb|EJX47394.1| RNA methyltransferase, TrmH family [Enterococcus faecium R499]
gi|402941053|gb|EJX59812.1| RNA methyltransferase, TrmH family [Enterococcus faecium R446]
gi|402943686|gb|EJX62155.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1986]
gi|402953514|gb|EJX71228.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1140]
gi|402977476|gb|EJX93290.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV168]
gi|402978872|gb|EJX94582.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV165]
gi|402985447|gb|EJY00654.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV161]
gi|402989283|gb|EJY04218.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV102]
gi|402997956|gb|EJY12246.1| RNA methyltransferase, TrmH family [Enterococcus faecium E422]
gi|403004898|gb|EJY18657.1| RNA methyltransferase, TrmH family [Enterococcus faecium C621]
Length = 254
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|431033276|ref|ZP_19491122.1| RNA methyltransferase [Enterococcus faecium E1590]
gi|430564377|gb|ELB03561.1| RNA methyltransferase [Enterococcus faecium E1590]
Length = 254
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 172 SSESIEAIALMKIPTSVFSIDVNQKEAD---CRSWFPSIHRILVLDGIQDPGNLGTLLRT 228
S E ++A++ + P + ++ E W L+LD +QDPGN+GT++RT
Sbjct: 77 SDEVMDAVSDLPTPQGILAVMALTAEGTPDFSGGW-------LLLDNVQDPGNVGTMIRT 129
Query: 229 AMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
A AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 130 ADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|430877571|ref|ZP_19483940.1| RNA methyltransferase [Enterococcus faecium E1575]
gi|430557324|gb|ELA96790.1| RNA methyltransferase [Enterococcus faecium E1575]
Length = 254
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|410865591|ref|YP_006980202.1| RNA methyltransferase, TrmH family [Propionibacterium
acidipropionici ATCC 4875]
gi|410822232|gb|AFV88847.1| RNA methyltransferase, TrmH family [Propionibacterium
acidipropionici ATCC 4875]
Length = 277
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 34/208 (16%)
Query: 103 RHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSV 162
R G+ LV G+ +RE + RM L D + + VRV ++
Sbjct: 28 REEAGAFLVEGSQAVREALGWKG-------RMSLLATSDPLRDQSFVRAAQDRGVRVVTL 80
Query: 163 VMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNL 222
++S + SE++ + L + +SV ++ E P + +++ ++DPGN
Sbjct: 81 SEAEVSAL--SETVTSQGLFAVCSSVAGTELPALE------HPGL--VVICAQVRDPGNA 130
Query: 223 GTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG-------SWYHLEVL 275
GT++R A AF V L G DP + K +RAS G+ F LP++SG SW L
Sbjct: 131 GTVIRCADAFGAAAVVLTKGSVDPHNAKTVRASVGSVFHLPVISGVDLEDAVSWARAAGL 190
Query: 276 KDEFQMKLLAGHAGGNEEPRQVLQLSQE 303
++LA GG R + +L++E
Sbjct: 191 ------QILAADGGG----RSLDELARE 208
>gi|430851941|ref|ZP_19469676.1| RNA methyltransferase [Enterococcus faecium E1258]
gi|430542523|gb|ELA82631.1| RNA methyltransferase [Enterococcus faecium E1258]
Length = 254
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|373464463|ref|ZP_09556002.1| RNA methyltransferase, TrmH family [Lactobacillus kisonensis F0435]
gi|371762665|gb|EHO51194.1| RNA methyltransferase, TrmH family [Lactobacillus kisonensis F0435]
Length = 255
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 32/196 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS N VK KL QS R G ++ G + E N ++ L TV +
Sbjct: 1 METITSNQNSKVKEWKKL-QSKKGRTKAGEYVIEGWHIVGEAINHHKQL--LTVMVTNED 57
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI----DVN 194
LD+++ D+ +T ++ + +S ++ P VF++ D +
Sbjct: 58 FLDELD----FDSANTPVYLITPEIANHISSTET------------PQGVFAVLKTEDYH 101
Query: 195 QKEADC--RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
+K D SW L+LD IQDPGN+GT++RTA A G+ G D ++ K +
Sbjct: 102 EKLPDNLKGSW-------LLLDNIQDPGNIGTMVRTADAAGISGIVFGQGTADIYNPKVV 154
Query: 253 RASRGACFQLPIVSGS 268
RA +G+ F + + SG+
Sbjct: 155 RAMQGSQFHMQLFSGN 170
>gi|260435563|ref|ZP_05789533.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109]
gi|260413437|gb|EEX06733.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8109]
Length = 250
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 205 PSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
P + +LVLD IQDPGNLGTLLRTA+A V++ G DP K LRAS GA QLP
Sbjct: 78 PELDFLLVLDRIQDPGNLGTLLRTALAADVNAVWMGAG-VDPLGTKVLRASAGALLQLP 135
>gi|398337519|ref|ZP_10522224.1| rRNA methylase [Leptospira kmetyi serovar Malaysia str. Bejo-Iso9]
Length = 280
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 99/204 (48%), Gaps = 23/204 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRM----DCL 137
ITS SN +K+ L++ +R S G + G REI +S + R + +C
Sbjct: 12 ITSFSNEKLKNISNLKEKK-HRESSGLFFIEG---YREILRAQKSGKVRFQNLLYSPECF 67
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS--IDVNQ 195
L ++ + + +I +RV V +K+S + + A A FS +D Q
Sbjct: 68 LGENEFSL---IRSIGAKNIRVPKKVYEKISYRDRPDGLIATA------QFFSTGLDAFQ 118
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
KE+ + F + ILV++G++ PGNLGT+LRTA + V + D F+ +RAS
Sbjct: 119 KES---TAFKNSKPILVIEGVEKPGNLGTILRTAEGAGFHTVLVADPRLDLFNPNVIRAS 175
Query: 256 RGACFQLPIVSGSWYHL-EVLKDE 278
GA F L + G + E+LK++
Sbjct: 176 TGALFTLDVYLGETEAIYEILKNQ 199
>gi|257884108|ref|ZP_05663761.1| rRNA methyltransferase [Enterococcus faecium 1,231,501]
gi|431230091|ref|ZP_19502294.1| RNA methyltransferase [Enterococcus faecium E1622]
gi|431764406|ref|ZP_19552947.1| RNA methyltransferase [Enterococcus faecium E4215]
gi|257819946|gb|EEV47094.1| rRNA methyltransferase [Enterococcus faecium 1,231,501]
gi|430574077|gb|ELB12855.1| RNA methyltransferase [Enterococcus faecium E1622]
gi|430631057|gb|ELB67388.1| RNA methyltransferase [Enterococcus faecium E4215]
Length = 254
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|119898184|ref|YP_933397.1| RNA methyltransferase [Azoarcus sp. BH72]
gi|119670597|emb|CAL94510.1| RNA methyltransferase [Azoarcus sp. BH72]
Length = 263
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 84/192 (43%), Gaps = 28/192 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTV------ 132
+K+ITS NP VKH L ++ R G L G I + L+ V
Sbjct: 1 MKSITSRDNPAVKHLHGLAHNARDRRKAGETLFDGPHLIGAALDAGWPLKRLVVSESGYA 60
Query: 133 RMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID 192
R + LL++ + +++ ++ +S V + PT + ++
Sbjct: 61 RAEIRSLLERAPA-------TIPALKLDDSLVAHVSPVDT------------PTGILAVA 101
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
A + S+ +VLDG+QDPGNLGT+LRTA A V L GC P+S + L
Sbjct: 102 DIPPAAPAPAAGASL---VVLDGVQDPGNLGTILRTAAAAGVEDVVLTGGCAQPWSPRTL 158
Query: 253 RASRGACFQLPI 264
RA GA F L I
Sbjct: 159 RAGMGAHFHLRI 170
>gi|430947038|ref|ZP_19485818.1| RNA methyltransferase [Enterococcus faecium E1576]
gi|430558435|gb|ELA97854.1| RNA methyltransferase [Enterococcus faecium E1576]
Length = 254
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|430827851|ref|ZP_19445982.1| RNA methyltransferase [Enterococcus faecium E0269]
gi|431108362|ref|ZP_19497513.1| RNA methyltransferase [Enterococcus faecium E1613]
gi|430484197|gb|ELA61227.1| RNA methyltransferase [Enterococcus faecium E0269]
gi|430569486|gb|ELB08490.1| RNA methyltransferase [Enterococcus faecium E1613]
Length = 254
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|442805516|ref|YP_007373665.1| tRNA/rRNA methyltransferase SpoU [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442741366|gb|AGC69055.1| tRNA/rRNA methyltransferase SpoU [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 292
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 185 PTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCC 244
P V ++ V E + ++ F R LVLD IQDPGN GT++RTA A + V G
Sbjct: 119 PQGVLAV-VRMPETELKTIFKEGFRGLVLDSIQDPGNAGTMIRTAHALGFDAVVATEGTV 177
Query: 245 DPFSEKALRASRGACFQLPIV 265
D ++ K LR++ G+ F +P++
Sbjct: 178 DLYNGKVLRSTMGSIFYIPVL 198
>gi|430843778|ref|ZP_19461677.1| RNA methyltransferase [Enterococcus faecium E1050]
gi|430497637|gb|ELA73674.1| RNA methyltransferase [Enterococcus faecium E1050]
Length = 254
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|430825755|ref|ZP_19443956.1| RNA methyltransferase [Enterococcus faecium E0164]
gi|430445819|gb|ELA55536.1| RNA methyltransferase [Enterococcus faecium E0164]
Length = 254
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|293553832|ref|ZP_06674447.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039]
gi|406591097|ref|ZP_11065404.1| RNA methyltransferase [Enterococcus sp. GMD1E]
gi|410936861|ref|ZP_11368724.1| RNA methyltransferase [Enterococcus sp. GMD5E]
gi|415893540|ref|ZP_11550185.1| Uncharacterized tRNA/rRNA methyltransferase ysgA [Enterococcus
faecium E4453]
gi|431746482|ref|ZP_19535308.1| RNA methyltransferase [Enterococcus faecium E2134]
gi|291602038|gb|EFF32275.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1039]
gi|364092686|gb|EHM35033.1| Uncharacterized tRNA/rRNA methyltransferase ysgA [Enterococcus
faecium E4453]
gi|404468263|gb|EKA13266.1| RNA methyltransferase [Enterococcus sp. GMD1E]
gi|410734891|gb|EKQ76809.1| RNA methyltransferase [Enterococcus sp. GMD5E]
gi|430608716|gb|ELB45955.1| RNA methyltransferase [Enterococcus faecium E2134]
Length = 254
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|294616353|ref|ZP_06696146.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636]
gi|424898819|ref|ZP_18322373.1| RNA methyltransferase, TrmH family [Enterococcus faecium R497]
gi|430847722|ref|ZP_19465556.1| RNA methyltransferase [Enterococcus faecium E1133]
gi|430849350|ref|ZP_19467131.1| RNA methyltransferase [Enterococcus faecium E1185]
gi|431077000|ref|ZP_19495036.1| RNA methyltransferase [Enterococcus faecium E1604]
gi|431414381|ref|ZP_19512200.1| RNA methyltransferase [Enterococcus faecium E1630]
gi|431750242|ref|ZP_19538967.1| RNA methyltransferase [Enterococcus faecium E2297]
gi|431759593|ref|ZP_19548204.1| RNA methyltransferase [Enterococcus faecium E3346]
gi|291590867|gb|EFF22583.1| RNA methyltransferase, TrmH family [Enterococcus faecium E1636]
gi|402932039|gb|EJX51575.1| RNA methyltransferase, TrmH family [Enterococcus faecium R497]
gi|430536396|gb|ELA76764.1| RNA methyltransferase [Enterococcus faecium E1133]
gi|430538196|gb|ELA78495.1| RNA methyltransferase [Enterococcus faecium E1185]
gi|430566455|gb|ELB05568.1| RNA methyltransferase [Enterococcus faecium E1604]
gi|430589114|gb|ELB27259.1| RNA methyltransferase [Enterococcus faecium E1630]
gi|430610171|gb|ELB47325.1| RNA methyltransferase [Enterococcus faecium E2297]
gi|430625774|gb|ELB62377.1| RNA methyltransferase [Enterococcus faecium E3346]
Length = 254
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|424879755|ref|ZP_18303387.1| rRNA methylase [Rhizobium leguminosarum bv. trifolii WU95]
gi|392516118|gb|EIW40850.1| rRNA methylase [Rhizobium leguminosarum bv. trifolii WU95]
Length = 286
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 110/261 (42%), Gaps = 47/261 (18%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L S R G+ L G + + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTNKKS-REESGTFLAEGLKLVIDAIELGWAIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ-- 195
+ + ++ ++ TV +V++ S + I +I P V I +
Sbjct: 67 VYAKAAKGKPLVEQMAARTVASGGLVLE-----VSEKVIASITRRDNPQMVVGIFEQRWT 121
Query: 196 -----KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
+ +D +W + LD ++DPGNLGT++RTA A G+ LL DPFS +
Sbjct: 122 PLKGIRLSDGETW-------VALDRVRDPGNLGTIIRTADAAGASGIILLGETTDPFSLE 174
Query: 251 ALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGH-AG------------------GN 291
+RA+ G+ F +P+ + + + ++A H AG GN
Sbjct: 175 TVRATMGSVFAVPVARATPEEFIAWRKSAGVSVVATHLAGAVDYRTIDYRKKPVVLLMGN 234
Query: 292 EEPRQVLQLSQELADSFAGVP 312
E+ QL++E AD+ A +P
Sbjct: 235 EQSGLPEQLARE-ADALARIP 254
>gi|300691589|ref|YP_003752584.1| tRNA/rRNA methyltransferase, SpoU like [Ralstonia solanacearum
PSI07]
gi|299078649|emb|CBJ51307.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
solanacearum PSI07]
gi|344169899|emb|CCA82268.1| putative tRNA/rRNA methyltransferase, SpoU like [blood disease
bacterium R229]
Length = 259
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+ITS N KH L S+ R G +++ G I+ L CL+
Sbjct: 1 MKHITSRDNAVFKHLKALSGSTQQRRRAGQSVLDG------IHLVAAYLDAGHTPAQCLV 54
Query: 139 LLDKVEVPEGLDNIS----THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
+ PE + ++ H V ++ + +L+ V + I+ + L+ P +
Sbjct: 55 SERHLAHPEVVPLLARLDPQHIVLLADSLFAQLTTVVNG--IDLMVLIDTPEGHLP---H 109
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ E DC ++LDGIQD GN+G++LR A A VF+ GC +S K LRA
Sbjct: 110 RIEHDC----------VILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRA 159
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
+ GA F L IV + E + + LLA
Sbjct: 160 AMGAHFHLNIVEHCTF--ESVHARLHVPLLA 188
>gi|431301311|ref|ZP_19507630.1| RNA methyltransferase [Enterococcus faecium E1626]
gi|430580501|gb|ELB18968.1| RNA methyltransferase [Enterococcus faecium E1626]
Length = 254
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|149197587|ref|ZP_01874637.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
gi|149139157|gb|EDM27560.1| rRNA methyltransferase [Lentisphaera araneosa HTCC2155]
Length = 248
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 170 VQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTA 229
V S + + ++L + P + + + +C S +LVLDG+ +PGN+GT+LRTA
Sbjct: 67 VLSEKEMSELSLTENPQGILMLMKKPDKVECPSSLKPF--VLVLDGVAEPGNMGTILRTA 124
Query: 230 MAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+A V L G DP++ KA+RA GA F+L +
Sbjct: 125 LAVGLERVILTSGTVDPYNAKAVRAGMGAQFRLEFI 160
>gi|33862607|ref|NP_894167.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str. MIT
9313]
gi|33634523|emb|CAE20509.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9313]
Length = 275
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
+L LD +QDPGNLGTLLRTA+A + V+L G DP S K LRAS GA QLP
Sbjct: 111 VLALDRLQDPGNLGTLLRTALAAEVEAVWLASG-ADPLSPKVLRASAGAILQLP 163
>gi|387880079|ref|YP_006310382.1| SpoU rRNA methylase family protein [Streptococcus parasanguinis
FW213]
gi|386793529|gb|AFJ26564.1| SpoU rRNA methylase family protein [Streptococcus parasanguinis
FW213]
Length = 260
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 36/197 (18%)
Query: 73 FALPYH--VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQER 130
F+L Y+ + ITS SN +K+ KL Q ++ S L+ G + F +++ +
Sbjct: 5 FSLCYNRSMNIITSKSNNVIKNAKKLHQK---KYRTDSYLIEGW------HLFEEAVENQ 55
Query: 131 TVRMDCLLL---LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTS 187
+ +L LD+VE NI TV V+S ++ L+ ++ + I A L++ P
Sbjct: 56 AIIRQIFVLEAYLDRVE------NIQNITV-VTSEILSLLADSKTPQGIVAEILLEQP-- 106
Query: 188 VFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPF 247
+ D P R L L+ +QDPGN+GT++RTA A + GV L D +
Sbjct: 107 --------ELPD-----PLQGRYLYLEDVQDPGNVGTMIRTADAAGFDGVMLSKASADLY 153
Query: 248 SEKALRASRGACFQLPI 264
S K LR+ +G+ F +PI
Sbjct: 154 SLKTLRSMQGSHFHIPI 170
>gi|424951414|ref|ZP_18366512.1| RNA methyltransferase, TrmH family [Enterococcus faecium R496]
gi|424975284|ref|ZP_18388456.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1137]
gi|424982558|ref|ZP_18395207.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV99]
gi|425022009|ref|ZP_18432222.1| RNA methyltransferase, TrmH family [Enterococcus faecium C497]
gi|425026905|ref|ZP_18434975.1| RNA methyltransferase, TrmH family [Enterococcus faecium C1904]
gi|425046160|ref|ZP_18450200.1| RNA methyltransferase, TrmH family [Enterococcus faecium 510]
gi|425053490|ref|ZP_18457032.1| RNA methyltransferase, TrmH family [Enterococcus faecium 506]
gi|425059004|ref|ZP_18462356.1| RNA methyltransferase, TrmH family [Enterococcus faecium 504]
gi|427396436|ref|ZP_18889195.1| hypothetical protein HMPREF9307_01371 [Enterococcus durans
FB129-CNAB-4]
gi|430835566|ref|ZP_19453555.1| RNA methyltransferase [Enterococcus faecium E0680]
gi|430855160|ref|ZP_19472870.1| RNA methyltransferase [Enterococcus faecium E1392]
gi|430857875|ref|ZP_19475508.1| RNA methyltransferase [Enterococcus faecium E1552]
gi|431147907|ref|ZP_19499273.1| RNA methyltransferase [Enterococcus faecium E1620]
gi|431252064|ref|ZP_19504122.1| RNA methyltransferase [Enterococcus faecium E1623]
gi|431374439|ref|ZP_19510127.1| RNA methyltransferase [Enterococcus faecium E1627]
gi|431513932|ref|ZP_19515980.1| RNA methyltransferase [Enterococcus faecium E1634]
gi|431547501|ref|ZP_19519068.1| RNA methyltransferase [Enterococcus faecium E1731]
gi|431710426|ref|ZP_19525238.1| RNA methyltransferase [Enterococcus faecium E1904]
gi|431742852|ref|ZP_19531736.1| RNA methyltransferase [Enterococcus faecium E2071]
gi|431755095|ref|ZP_19543751.1| RNA methyltransferase [Enterococcus faecium E2883]
gi|431769221|ref|ZP_19557645.1| RNA methyltransferase [Enterococcus faecium E1321]
gi|431781649|ref|ZP_19569793.1| RNA methyltransferase [Enterococcus faecium E6012]
gi|431785969|ref|ZP_19573989.1| RNA methyltransferase [Enterococcus faecium E6045]
gi|447912326|ref|YP_007393738.1| rRNA methylase [Enterococcus faecium NRRL B-2354]
gi|402930113|gb|EJX49806.1| RNA methyltransferase, TrmH family [Enterococcus faecium R496]
gi|402954183|gb|EJX71826.1| RNA methyltransferase, TrmH family [Enterococcus faecium P1137]
gi|402960556|gb|EJX77687.1| RNA methyltransferase, TrmH family [Enterococcus faecium ERV99]
gi|403004639|gb|EJY18427.1| RNA methyltransferase, TrmH family [Enterococcus faecium C497]
gi|403005347|gb|EJY19066.1| RNA methyltransferase, TrmH family [Enterococcus faecium C1904]
gi|403025064|gb|EJY37171.1| RNA methyltransferase, TrmH family [Enterococcus faecium 510]
gi|403030274|gb|EJY41971.1| RNA methyltransferase, TrmH family [Enterococcus faecium 506]
gi|403036723|gb|EJY48064.1| RNA methyltransferase, TrmH family [Enterococcus faecium 504]
gi|425723106|gb|EKU85997.1| hypothetical protein HMPREF9307_01371 [Enterococcus durans
FB129-CNAB-4]
gi|430489257|gb|ELA65881.1| RNA methyltransferase [Enterococcus faecium E0680]
gi|430547085|gb|ELA87027.1| RNA methyltransferase [Enterococcus faecium E1552]
gi|430547446|gb|ELA87378.1| RNA methyltransferase [Enterococcus faecium E1392]
gi|430575559|gb|ELB14270.1| RNA methyltransferase [Enterococcus faecium E1620]
gi|430578490|gb|ELB17042.1| RNA methyltransferase [Enterococcus faecium E1623]
gi|430583063|gb|ELB21452.1| RNA methyltransferase [Enterococcus faecium E1627]
gi|430586188|gb|ELB24449.1| RNA methyltransferase [Enterococcus faecium E1634]
gi|430591170|gb|ELB29209.1| RNA methyltransferase [Enterococcus faecium E1731]
gi|430596349|gb|ELB34184.1| RNA methyltransferase [Enterococcus faecium E1904]
gi|430607821|gb|ELB45122.1| RNA methyltransferase [Enterococcus faecium E2071]
gi|430617664|gb|ELB54530.1| RNA methyltransferase [Enterococcus faecium E2883]
gi|430627759|gb|ELB64233.1| RNA methyltransferase [Enterococcus faecium E1321]
gi|430646584|gb|ELB82059.1| RNA methyltransferase [Enterococcus faecium E6045]
gi|430648867|gb|ELB84256.1| RNA methyltransferase [Enterococcus faecium E6012]
gi|445188035|gb|AGE29677.1| rRNA methylase [Enterococcus faecium NRRL B-2354]
Length = 254
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|430841708|ref|ZP_19459626.1| RNA methyltransferase [Enterococcus faecium E1007]
gi|430493766|gb|ELA70050.1| RNA methyltransferase [Enterococcus faecium E1007]
Length = 254
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|430830975|ref|ZP_19449030.1| RNA methyltransferase [Enterococcus faecium E0333]
gi|430482197|gb|ELA59328.1| RNA methyltransferase [Enterococcus faecium E0333]
Length = 254
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|430819656|ref|ZP_19438304.1| RNA methyltransferase [Enterococcus faecium E0045]
gi|430440344|gb|ELA50606.1| RNA methyltransferase [Enterococcus faecium E0045]
Length = 254
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|326931469|ref|XP_003211851.1| PREDICTED: RNA methyltransferase-like protein 1-like, partial
[Meleagris gallopavo]
Length = 375
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 21/175 (12%)
Query: 94 LKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLD-NI 152
+ + +S S+R HG L+ G IR+ L+ VP L +
Sbjct: 56 VTIAKSRSFRDRHGKVLLEGQRLIRDA-------------------LEAGAVPRALFFST 96
Query: 153 STHTVRVSSVVMKKLSGVQSS-ESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRIL 211
+ H + S +K V+ E I+ + + P + I A + +L
Sbjct: 97 ALHLRELPSAPLKGARLVRVRFEDIKCWSDVVAPQGMIGIFSKPDHAKMSYPAAQLPLVL 156
Query: 212 VLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
+ D I+DPGNLGT+LR+A V L GC DP+ K LRA GA F++PIV+
Sbjct: 157 ICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRAGMGAHFRVPIVA 211
>gi|294623039|ref|ZP_06701928.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317]
gi|425032784|ref|ZP_18437795.1| RNA methyltransferase, TrmH family [Enterococcus faecium 515]
gi|431003757|ref|ZP_19488855.1| RNA methyltransferase [Enterococcus faecium E1578]
gi|431775501|ref|ZP_19563773.1| RNA methyltransferase [Enterococcus faecium E2560]
gi|291597595|gb|EFF28757.1| RNA methyltransferase, TrmH family [Enterococcus faecium U0317]
gi|403011778|gb|EJY25061.1| RNA methyltransferase, TrmH family [Enterococcus faecium 515]
gi|430561846|gb|ELB01100.1| RNA methyltransferase [Enterococcus faecium E1578]
gi|430642770|gb|ELB78536.1| RNA methyltransferase [Enterococcus faecium E2560]
Length = 254
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|225872630|ref|YP_002754087.1| TrmH family RNA methyltransferase [Acidobacterium capsulatum ATCC
51196]
gi|225791883|gb|ACO31973.1| RNA methyltransferase, TrmH family protein [Acidobacterium
capsulatum ATCC 51196]
Length = 283
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 61/110 (55%), Gaps = 16/110 (14%)
Query: 172 SSESIEAIALMKIPTSVFSIDVNQKEA------------DCRSWFPSIHR---ILVLDGI 216
S +++ ++++P +FS V+ + D FP+ H +LV +
Sbjct: 80 SRAALDTAEILELPADIFSSAVDTESPQGIAALLAPPRFDWDDLFPA-HAPALLLVTASL 138
Query: 217 QDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
QDPGNLGTL+R+A AF G+ LPG + ++ K +RAS G+ F++P+V+
Sbjct: 139 QDPGNLGTLIRSAEAFGASGILTLPGTVNLWNAKVVRASAGSVFRMPVVA 188
>gi|78212412|ref|YP_381191.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605]
gi|78196871|gb|ABB34636.1| tRNA/rRNA methyltransferase (SpoU) [Synechococcus sp. CC9605]
Length = 249
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 205 PSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
P + +LVLD IQDPGNLGTLLRTA+A V++ G DP K LRAS GA QLP
Sbjct: 78 PELDFLLVLDRIQDPGNLGTLLRTALAADVNAVWMGAG-VDPLGTKVLRASAGALLQLP 135
>gi|389869093|ref|YP_006376516.1| RNA methyltransferase [Enterococcus faecium DO]
gi|388534342|gb|AFK59534.1| RNA methyltransferase [Enterococcus faecium DO]
Length = 190
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 85/192 (44%), Gaps = 31/192 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S NP +K K YR L+ G I E + + ++E L
Sbjct: 1 MKEIQSAKNPRIKELKK-LHKKKYREEKAEYLLEGFHLIEEAASSDAEIKE--------L 51
Query: 139 LLDKVEVPEGLD----NISTHTVRVSSVVMKKLSGVQSSESIEAI-ALMKIPTSVFSIDV 193
+ + + E D N T VS VM +S + + + I A+ L T FS
Sbjct: 52 FVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTLTSEDTPDFS--- 108
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
W L+LD +QDPGN+GT++RTA AF GV L G D +S K LR
Sbjct: 109 -------GGW-------LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLR 154
Query: 254 ASRGACFQLPIV 265
+ +G+ + LP++
Sbjct: 155 SMQGSNYHLPVL 166
>gi|126696822|ref|YP_001091708.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9301]
gi|126543865|gb|ABO18107.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9301]
Length = 237
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
ILVLD IQDPGN+G L RTA+A +F L G P ++K LRAS GA F LP
Sbjct: 74 ILVLDRIQDPGNMGNLFRTALAAGVDAIF-LAGGAHPLNQKVLRASTGAVFNLP 126
>gi|429735283|ref|ZP_19269252.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 138
str. F0429]
gi|429159395|gb|EKY01910.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 138
str. F0429]
Length = 285
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+ LD +QDPGN+GT+LRTA A GV LL G D +S K +RA+ G+ F +P V+G
Sbjct: 139 IALDRVQDPGNVGTILRTADAVGVTGVILLRGSADIYSGKVVRATMGSLFHVPFVTG 195
>gi|399888250|ref|ZP_10774127.1| RNA methyltransferase [Clostridium arbusti SL206]
Length = 261
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 93/193 (48%), Gaps = 36/193 (18%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYN--FN-------RSLQERTV 132
I S N +K KL Q YR+ + +V G + E + FN +++E+
Sbjct: 5 IKSKDNSTIKEIKKL-QEKKYRNLYNKFIVEGFRFVSEALDSKFNVCYVIISETIEEK-- 61
Query: 133 RMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID 192
+K+ + E + + T ++VS ++K + + + I A+ + +ID
Sbjct: 62 -------FEKLGLNEKIKD-GTKLIKVSEAILKIICSTDNPQGIVAV----VSNEQITID 109
Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
N+ ++ ++ D +QDPGN+GT++RTA A G+ + G D +++K L
Sbjct: 110 YNE------GFY------ILADKVQDPGNMGTIIRTANAAGAKGIIVTKGTVDIYNDKTL 157
Query: 253 RASRGACFQLPIV 265
R++ G+ F++P++
Sbjct: 158 RSTMGSIFKIPVI 170
>gi|431586278|ref|ZP_19520793.1| RNA methyltransferase [Enterococcus faecium E1861]
gi|431737145|ref|ZP_19526100.1| RNA methyltransferase [Enterococcus faecium E1972]
gi|430593456|gb|ELB31442.1| RNA methyltransferase [Enterococcus faecium E1861]
gi|430599229|gb|ELB36941.1| RNA methyltransferase [Enterococcus faecium E1972]
Length = 254
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 172 SSESIEAIALMKIPTSVFSIDVNQKEAD---CRSWFPSIHRILVLDGIQDPGNLGTLLRT 228
S E ++A++ + P + ++ E W L+LD +QDPGN+GT++RT
Sbjct: 77 SDEVMDAVSDLPTPQGILAVMALTAEGAPDFSGGW-------LLLDNVQDPGNVGTMIRT 129
Query: 229 AMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
A AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 130 ADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|430838369|ref|ZP_19456315.1| RNA methyltransferase [Enterococcus faecium E0688]
gi|430491611|gb|ELA68063.1| RNA methyltransferase [Enterococcus faecium E0688]
Length = 254
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 172 SSESIEAIALMKIPTSVFSIDVNQKEAD---CRSWFPSIHRILVLDGIQDPGNLGTLLRT 228
S E ++A++ + P + ++ E W L+LD +QDPGN+GT++RT
Sbjct: 77 SDEVMDAVSDLPTPQGILAVMALTAEGAPDFSGGW-------LLLDNVQDPGNVGTMIRT 129
Query: 229 AMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
A AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 130 ADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|425055729|ref|ZP_18459199.1| RNA methyltransferase, TrmH family [Enterococcus faecium 505]
gi|430834188|ref|ZP_19452195.1| RNA methyltransferase [Enterococcus faecium E0679]
gi|403033230|gb|EJY44746.1| RNA methyltransferase, TrmH family [Enterococcus faecium 505]
gi|430485419|gb|ELA62325.1| RNA methyltransferase [Enterococcus faecium E0679]
Length = 254
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|293571651|ref|ZP_06682672.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium
E980]
gi|291608321|gb|EFF37622.1| hypothetical tRNA/rRNA methyltransferase [Enterococcus faecium
E980]
Length = 254
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 172 SSESIEAIALMKIPTSVFSIDVNQKEAD---CRSWFPSIHRILVLDGIQDPGNLGTLLRT 228
S E ++A++ + P + ++ E W L+LD +QDPGN+GT++RT
Sbjct: 77 SDEVMDAVSDLPTPQGILAVMALTAEGAPDFSGGW-------LLLDNVQDPGNVGTMIRT 129
Query: 229 AMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
A AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 130 ADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|72393371|ref|XP_847486.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62359584|gb|AAX80017.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70803516|gb|AAZ13420.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 373
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 20/170 (11%)
Query: 96 LRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGL---DNI 152
LR++ + R SHG+ +V G + IR ++ ++ +R + + + D D +
Sbjct: 69 LRENGNVRRSHGACVVGGASAIRRVW------RDYKIRPNVVYVPDTEPTVASWCLEDEL 122
Query: 153 STHTVRVSSVVMKKLSGVQSSESIEA-IALMKIPTSVFSIDVNQKEADCRSWFPS-IHRI 210
T VR S V + + G+ S+E + A IP S S++ E PS + +
Sbjct: 123 PTCIVRCSPVEINR--GLLSAELADGHAAEFPIPASP-SVETFLGEGK-----PSRLASM 174
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
LVL G++ P N+GTL+R A+ + V L+ C DPF EKALRAS G F
Sbjct: 175 LVLVGLRIPSNVGTLIRAAVEMGFESVLLI-NCLDPFGEKALRASEGTVF 223
>gi|402302272|ref|ZP_10821390.1| RNA methyltransferase, TrmH family [Selenomonas sp. FOBRC9]
gi|400380913|gb|EJP33720.1| RNA methyltransferase, TrmH family [Selenomonas sp. FOBRC9]
Length = 277
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+VLD +QDPGN+GT+LRTA+A G+ LL GC D ++ K +RA+ G F L + G
Sbjct: 129 VVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVVRAAMGGLFYLNVAQG 185
>gi|257898078|ref|ZP_05677731.1| RNA methyltransferase [Enterococcus faecium Com15]
gi|257835990|gb|EEV61064.1| RNA methyltransferase [Enterococcus faecium Com15]
Length = 254
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 10/97 (10%)
Query: 172 SSESIEAIALMKIPTSVFSIDVNQKEAD---CRSWFPSIHRILVLDGIQDPGNLGTLLRT 228
S E ++A++ + P + ++ E W L+LD +QDPGN+GT++RT
Sbjct: 77 SDEVMDAVSDLPTPQGILAVMALTAEGAPDFSGGW-------LLLDNVQDPGNVGTMIRT 129
Query: 229 AMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
A AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 130 ADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|429506155|ref|YP_007187339.1| RNA methyltransferase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|429487745|gb|AFZ91669.1| RNA methyltransferase [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 184
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 207 IHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+ R+L++D +QDPGNLGT++RTA A V L G DP++ K LR+++G+ F +PI+
Sbjct: 39 LKRLLLIDAVQDPGNLGTMIRTADAAGIDAVVLGEGTADPYNGKTLRSAQGSHFHIPIL 97
>gi|227515640|ref|ZP_03945689.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931]
gi|227086070|gb|EEI21382.1| RNA methyltransferase [Lactobacillus fermentum ATCC 14931]
Length = 268
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 91/205 (44%), Gaps = 30/205 (14%)
Query: 73 FALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTV 132
F + V+ +TS N VK KL Q+ R G L+ G + E +R L E
Sbjct: 5 FEVKELVEELTSVKNARVKEWKKL-QTRKGRKQQGRYLLEGWHLVNEALQADRGLHE--- 60
Query: 133 RMDCLLLLDKVEVPEGLDNIS--THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS 190
L+ K E+ D ++ V+ +M ++ + + I +A +P
Sbjct: 61 -----LIGTKEELAAHPDIVARFKEVYSVTPAIMAAVTETVTPQGIMVVA--DLP----- 108
Query: 191 IDVNQKEADCR-SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
D++Q D +W L LD +QDPGN+GT++RTA A + GV G D FS
Sbjct: 109 -DLHQVATDLSGAW-------LFLDRVQDPGNVGTMVRTADAAGFAGVVAGDGSADLFSP 160
Query: 250 KALRASRGACFQLPIVSGS---WYH 271
K +R+ +G+ F L + G W+
Sbjct: 161 KVVRSMQGSQFHLALYEGDLKKWFE 185
>gi|430860478|ref|ZP_19478077.1| RNA methyltransferase [Enterococcus faecium E1573]
gi|430551876|gb|ELA91626.1| RNA methyltransferase [Enterococcus faecium E1573]
Length = 254
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|424915794|ref|ZP_18339158.1| rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM597]
gi|392851970|gb|EJB04491.1| rRNA methylase [Rhizobium leguminosarum bv. trifolii WSM597]
Length = 286
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 15/221 (6%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L S R G+ L G + + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTNKKS-REESGTFLAEGLKLVIDAIELGWTIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ ++ TV +V++ S + I +I P V I Q+
Sbjct: 67 VYAKAAKGKPLVEQMAAKTVASGGLVLE-----VSEKVIASITRRDNPQMVVGI-FEQRW 120
Query: 198 ADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
R P V LD ++DPGNLGT++RTA A G+ L+ DPFS + +RA+
Sbjct: 121 MPLRDIRPRDGETWVALDRVRDPGNLGTIIRTADAAGASGIILIGETTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
G+ F +P+ + + + ++A H G + R +
Sbjct: 181 GSVFAVPVARATPEEFIAWRKSAGVSVVATHLAGAVDYRTI 221
>gi|299067474|emb|CBJ38673.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia
solanacearum CMR15]
Length = 259
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 96/211 (45%), Gaps = 27/211 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+ITS N KH L S+ R G +++ G I+ L V CL+
Sbjct: 1 MKHITSRDNAVFKHLKALSGSTQQRRRAGQSVLDG------IHLVAAYLDAGHVPAQCLV 54
Query: 139 ---LLDKVEVPEGLDNISTHTV-RVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
L EV L I +V ++ + +L+ V + I+ +AL++ P +
Sbjct: 55 SERHLAHPEVAPLLARIDPQSVVLLADSLFAQLTTVVNG--IDLMALIETPEGHLP---H 109
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ E DC ++LDGIQD GN+G++LR A A VF+ GC +S K LRA
Sbjct: 110 RIEHDC----------VILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRA 159
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
+ GA F L +V + E + + LLA
Sbjct: 160 AMGAHFHLNVVEHCTF--ESVHARLHVPLLA 188
>gi|227551945|ref|ZP_03981994.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330]
gi|257895463|ref|ZP_05675116.1| RNA methyltransferase [Enterococcus faecium Com12]
gi|293378329|ref|ZP_06624498.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1]
gi|227178850|gb|EEI59822.1| TrmH family RNA methyltransferase [Enterococcus faecium TX1330]
gi|257832028|gb|EEV58449.1| RNA methyltransferase [Enterococcus faecium Com12]
gi|292643193|gb|EFF61334.1| RNA methyltransferase, TrmH family [Enterococcus faecium PC4.1]
Length = 254
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFDMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 166
>gi|69249394|ref|ZP_00604959.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO]
gi|68194181|gb|EAN08711.1| RNA methyltransferase, TrmH family [Enterococcus faecium DO]
Length = 190
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 85/192 (44%), Gaps = 31/192 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K I S NP +K K YR L+ G I E + + ++E L
Sbjct: 1 MKEIQSAKNPRIKELKK-LHKKKYREEKAEYLLEGFHLIEEAASSDAEIKE--------L 51
Query: 139 LLDKVEVPEGLD----NISTHTVRVSSVVMKKLSGVQSSESIEAI-ALMKIPTSVFSIDV 193
+ + + E D N T VS VM +S + + + I A+ L T FS
Sbjct: 52 FVTQRGMKEWGDWLAVNKEISTFLVSDEVMTAMSDLPTPQGILAVMTLTSEDTPDFS--- 108
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
W L+LD +QDPGN+GT++RTA AF GV L G D +S K LR
Sbjct: 109 -------GGW-------LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLR 154
Query: 254 ASRGACFQLPIV 265
+ +G+ + LP++
Sbjct: 155 SMQGSNYHLPVL 166
>gi|219666287|ref|YP_002456722.1| tRNA/rRNA methyltransferase SpoU [Desulfitobacterium hafniense
DCB-2]
gi|219536547|gb|ACL18286.1| tRNA/rRNA methyltransferase (SpoU) [Desulfitobacterium hafniense
DCB-2]
Length = 271
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 89/189 (47%), Gaps = 15/189 (7%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS N VK+ + L + +R +G L+ G + E L + +C
Sbjct: 2 LTSLQNEQVKYVVNLHKRK-FREENGEFLIEGWRFVEEGLARGAHLTKVFFCSEC----- 55
Query: 142 KVE----VPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
K E + E L + V V++K+S ++ + I +A++K + +
Sbjct: 56 KNESWPQLAEALKVKGVPVIEVDERVLRKMSDTENPQGI--LAVVKQSRWTWDDFIEIVN 113
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
RS P +L+LDG+QDPGN GT+LRTA+A V L G D ++ K LR++ G
Sbjct: 114 PAGRSAIP---MLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRSTMG 170
Query: 258 ACFQLPIVS 266
A F L IV+
Sbjct: 171 AIFSLNIVT 179
>gi|261330743|emb|CBH13728.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 373
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 86/170 (50%), Gaps = 20/170 (11%)
Query: 96 LRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGL---DNI 152
LR++ + R SHG+ +V G + IR ++ ++ +R + + + D D +
Sbjct: 69 LRENGNVRRSHGACVVGGASAIRRVW------RDYKIRPNVVYVPDTEPTVASWCLEDEL 122
Query: 153 STHTVRVSSVVMKKLSGVQSSESIEA-IALMKIPTSVFSIDVNQKEADCRSWFPS-IHRI 210
T VR S V + + G+ S+E + A IP S S++ E PS + +
Sbjct: 123 PTCIVRCSPVEINR--GLLSAELADGHAAEFPIPASP-SVETFLGEGK-----PSRLTSM 174
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
LVL G++ P N+GTL+R A+ + V L+ C DPF EKALRAS G F
Sbjct: 175 LVLVGLRIPSNVGTLIRAAVEMGFESVLLI-NCLDPFGEKALRASEGTVF 223
>gi|261324264|ref|ZP_05963461.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
gi|261300244|gb|EEY03741.1| tRNA/rRNA methyltransferase [Brucella neotomae 5K33]
Length = 297
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 15/221 (6%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP VK L +R G L G + + E+ R+ L
Sbjct: 26 QVKEVTSLANPIVKDLRSL-ALKKFRDQQGVFLAEGLKLVIDAL-------EQDWRIKTL 77
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + + ++ ++T T +V++ + + I AI P V + Q+
Sbjct: 78 VFAKSGKGNKTVEQVATRTFAKGGLVLE-----VTEKVISAITRRDNPQMVAGV-FEQQY 131
Query: 198 ADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
P + + V LD ++DPGNLGT++RTA A GV L+ DP+S + +RA+
Sbjct: 132 HQLAGLKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETVRATM 191
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
G+ F +P+ S + F ++ H G + R +
Sbjct: 192 GSVFSVPLYRASEADFLNWRKGFSGLVVGTHLKGAVDYRTI 232
>gi|341819933|emb|CCC56149.1| RNA methyltransferase [Weissella thailandensis fsh4-2]
Length = 259
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
+++ I ST N VK KL Q+ R + G+ L+ G ++E + L + L
Sbjct: 3 YMETIKSTKNSRVKTWQKL-QTKKGRLASGTYLLDGWHLVQEAITHDGKLHAVMGTAEQL 61
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ E+P G+ ++ + KKLS + + P +F+ +V+
Sbjct: 62 AEHQE-ELPLGVP-----VFEITEEIAKKLSDLVT------------PQGIFA-EVSLPN 102
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
A F L LD IQDPGN+GT++RTA A + GV G DP+S KALRA +G
Sbjct: 103 ATREPQFIHDGAWLFLDAIQDPGNVGTMVRTADAAGFAGVVFGHGSVDPYSPKALRAMQG 162
Query: 258 ACF 260
+ F
Sbjct: 163 SQF 165
>gi|299822562|ref|ZP_07054448.1| rRNA methyltransferase [Listeria grayi DSM 20601]
gi|299816091|gb|EFI83329.1| rRNA methyltransferase [Listeria grayi DSM 20601]
Length = 252
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 23/184 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS N VK KL Q+ R G LV G + E + ++E D +L
Sbjct: 4 ITSLQNVHVKTWKKL-QTRKGRQKSGQYLVEGFHLVEEALAQDGLVKEVIYTKDTIL--- 59
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
P L + V+ V +S ++ + + A+ M P+ +
Sbjct: 60 ----PFSLTETAFDVYEVTREVSHAISDTKTDQGVFAVVEMLEPSILMLFG--------- 106
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
R L++D +QDPGN+GTL+RTA A + V L G D ++ K +R+++G+ F
Sbjct: 107 ------KRFLLVDAVQDPGNVGTLIRTADAAGYDAVVLGRGSADLYNPKVIRSAQGSHFH 160
Query: 262 LPIV 265
+P++
Sbjct: 161 IPVI 164
>gi|294084964|ref|YP_003551724.1| tRNA/rRNA methyltransferase SpoU [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664539|gb|ADE39640.1| tRNA/rRNA methyltransferase (SpoU) [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 307
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 84/188 (44%), Gaps = 21/188 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITST+N VK L+ YR G L GT E +
Sbjct: 44 ITSTANAEVKF-LRALHERKYRRQSGWFLAEGTRICNEAVALGWDMH------------- 89
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGV---QSSESIEAIALMKIPTSVFSIDVNQKEA 198
++ G DN TH VR + + G S + ++ I+ P + QK
Sbjct: 90 RLAFLAGRDN-ETH-VRKLLDALDRADGRALPMSEKLLQRISRKDNPQMLLGA-FRQKWT 146
Query: 199 DCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
D + P + R V LD ++DPGNLGT++R+A A G+ L+ C DP+S +A+RAS G
Sbjct: 147 DLDAVTPDLSRPWVALDRVRDPGNLGTIMRSADAAGAKGIILIDDCTDPYSVEAVRASMG 206
Query: 258 ACFQLPIV 265
A F + IV
Sbjct: 207 AIFNVEIV 214
>gi|164687655|ref|ZP_02211683.1| hypothetical protein CLOBAR_01297 [Clostridium bartlettii DSM
16795]
gi|164603429|gb|EDQ96894.1| putative RNA methyltransferase, TrmH family, group 3 [Clostridium
bartlettii DSM 16795]
Length = 265
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 12/119 (10%)
Query: 147 EGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPS 206
E L+N + + S+ + ++ ++++ I A+ K V +I+ + K
Sbjct: 69 EELENKNIKIYKTSNKIFSEMVDTENTQGILAVLRYKERDLVNNINQDDK---------- 118
Query: 207 IHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+L+LD IQDPGN+GT++RTA + + LL GC D ++ K +R++ G+ F + I+
Sbjct: 119 --FVLILDRIQDPGNMGTIIRTADSAGVDAIILLKGCVDIYNPKVIRSTMGSIFDMNII 175
>gi|303254103|ref|ZP_07340218.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455]
gi|303262494|ref|ZP_07348436.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
SP14-BS292]
gi|303266013|ref|ZP_07351908.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457]
gi|303268055|ref|ZP_07353856.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458]
gi|421296802|ref|ZP_15747508.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae
GA58581]
gi|302598936|gb|EFL65967.1| SpoU rRNA Methylase family protein [Streptococcus pneumoniae BS455]
gi|302636394|gb|EFL66887.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae
SP14-BS292]
gi|302642415|gb|EFL72761.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS458]
gi|302644454|gb|EFL74706.1| spoU rRNA Methylase family protein [Streptococcus pneumoniae BS457]
gi|395893788|gb|EJH04771.1| RNA methyltransferase, TrmH family [Streptococcus pneumoniae
GA58581]
Length = 246
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 32/185 (17%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS +N VK+ KLRQ YR S + L+ G + F ++Q V ++ + L+
Sbjct: 4 ITSKANSVVKNAKKLRQKK-YRKS--AYLIEGW------HLFEEAVQ-AGVTIEKIFALE 53
Query: 142 KVEVPEGLDNIST--HTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
D ++T TV VS ++ L+ Q+ + I A+ + V D+NQ
Sbjct: 54 NYR-----DQLATFSQTVWVSEDILLDLADSQTPQGIVAVVQKE---EVGQADLNQG--- 102
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
+ L L+ +QDPGN+GT++RTA A + GV + D +S K LR+ +G+
Sbjct: 103 ---------KFLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSH 153
Query: 260 FQLPI 264
F LPI
Sbjct: 154 FHLPI 158
>gi|402830853|ref|ZP_10879548.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. CM59]
gi|402283803|gb|EJU32313.1| RNA methyltransferase, TrmH family [Capnocytophaga sp. CM59]
Length = 262
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 18/191 (9%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS NP VK+ L Q S R H L+ G I +++ + C
Sbjct: 1 MQQITSLQNPLVKYLFTLTQKSKQRKEHQQFLIEGKREITLALQAGYLIEQLFI---CPA 57
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+L + EV +S+ V +KLS S+E I A+A K A
Sbjct: 58 ILSEAEVERLFAGY--KCTAISAEVYEKLSYRSSTEGILALAQCK------------DHA 103
Query: 199 DCRSWFPSIH-RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
S F H +LV + + PGN+G LLRTA A V++ D ++ +R+S G
Sbjct: 104 LSGSVFQKAHPLVLVAEAPEKPGNIGALLRTADAAGIDAVYIANPKTDLYNPNVIRSSVG 163
Query: 258 ACFQLPIVSGS 268
F +PI GS
Sbjct: 164 TVFTVPIFMGS 174
>gi|296314260|ref|ZP_06864201.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC
43768]
gi|296839057|gb|EFH22995.1| RNA methyltransferase, TrmH family [Neisseria polysaccharea ATCC
43768]
Length = 261
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 91/191 (47%), Gaps = 28/191 (14%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS-----LQERTVR 133
+K I+S +N ++H +L +R + ++ G ++ R + E +
Sbjct: 1 MKQISSPNNEHIRHLHRLLSQGKFRRQYAQTVLEGVHLLQVFLQSGRKPVGVYIPEAKMP 60
Query: 134 MDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ + L V +PE D I + VS ++KK+S + ++ I +AL+ IP D
Sbjct: 61 SEEVRKLTAV-LPE--DRIFS----VSDGILKKISSLSCADDI--LALIDIPLGGTLPD- 110
Query: 194 NQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALR 253
+ DC +VLD +QDPGN+GT+LR+A A G V L G D +S K LR
Sbjct: 111 ---KGDC----------VVLDSVQDPGNVGTVLRSAAAAGVGTVVLGRGSADVWSPKVLR 157
Query: 254 ASRGACFQLPI 264
A GA F L I
Sbjct: 158 AGMGAHFLLDI 168
>gi|209547650|ref|YP_002279567.1| tRNA/rRNA methyltransferase SpoU [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209533406|gb|ACI53341.1| tRNA/rRNA methyltransferase (SpoU) [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 286
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 15/221 (6%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L S R G+ L G + + +++ L
Sbjct: 15 QVKEVTSLANPIIKDIKALTNKKS-REESGTFLAEGLKLVIDAIELGWTIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ ++ TV +V++ S + I +I P V I Q+
Sbjct: 67 VYAKAAKGKPLVEQMAARTVASGGLVLE-----VSEKVIASITRRDNPQMVVGI-FEQRW 120
Query: 198 ADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
R P V LD ++DPGNLGT++RTA A G+ L+ DPFS + +RA+
Sbjct: 121 MPLRDIRPRDGETWVALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
G+ F +P+ + + + ++A H G + R +
Sbjct: 181 GSVFAVPVARAAPEEFIAWRKSAGVSVVATHLAGAVDYRTI 221
>gi|421451636|ref|ZP_15900997.1| 23S rRNA methyltransferase [Streptococcus salivarius K12]
gi|400182067|gb|EJO16329.1| 23S rRNA methyltransferase [Streptococcus salivarius K12]
Length = 245
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+ L+LD +QDPGN+GT++RTA A + GVFL D +++K LR+ +G+ F LPI G
Sbjct: 103 KYLLLDDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRG 161
>gi|62289126|ref|YP_220919.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
gi|62195258|gb|AAX73558.1| RNA methyltransferase, TrmH family [Brucella abortus bv. 1 str.
9-941]
Length = 297
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 23/225 (10%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP VK L +R G L G + + E+ R+ L
Sbjct: 26 QVKEVTSLANPIVKDLRSL-ALKKFRDQQGVFLAEGLKLVIDAL-------EQDWRIKTL 77
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVM----KKLSGVQSSESIEAIALMKIPTSVFSIDV 193
+ + + ++ ++T T +V+ K +S + ++++ +A VF
Sbjct: 78 VFAKSGKGNKTVEQVATRTFAKGGLVLEVTEKVISAITRRDNLQMVA------GVF---- 127
Query: 194 NQKEADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
Q+ P + + V LD ++DPGNLGT++RTA A GV L+ DP+S + +
Sbjct: 128 EQQYHQLAGLKPKGNDVYVALDRVRDPGNLGTVIRTADAVGAKGVILIGDTTDPYSLETV 187
Query: 253 RASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
RA+ G+ F +P+ S + F ++ H G + R +
Sbjct: 188 RATMGSVFSVPLYRASEADFLNWRKGFSGLVVGTHLKGAVDYRTI 232
>gi|188588020|ref|YP_001921625.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str.
Alaska E43]
gi|188498301|gb|ACD51437.1| RNA methyltransferase, TrmH family [Clostridium botulinum E3 str.
Alaska E43]
Length = 262
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 24/123 (19%)
Query: 159 VSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQD 218
++ + K+L+ ++ + I AI M N K+ D + F L D +QD
Sbjct: 78 ITDTLFKELASTENPQGIIAIVKM-----------NNKKLDFQGDF-----YLFCDKVQD 121
Query: 219 PGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDE 278
PGNLGT++RTA A G+ L G D ++EK +R++ G+ F +PI +Y DE
Sbjct: 122 PGNLGTIIRTAHAAGVNGIVLSKGTVDIYNEKTIRSTMGSLFYMPI----YYD----DDE 173
Query: 279 FQM 281
F +
Sbjct: 174 FSL 176
>gi|257879970|ref|ZP_05659623.1| RNA methyltransferase [Enterococcus faecium 1,230,933]
gi|257814198|gb|EEV42956.1| RNA methyltransferase [Enterococcus faecium 1,230,933]
Length = 223
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LP++
Sbjct: 81 LLLDNVQDPGNVGTMIRTADAFGMAGVLLGKGTADIYSTKVLRSMQGSNYHLPVL 135
>gi|297583678|ref|YP_003699458.1| tRNA/rRNA methyltransferase SpoU [Bacillus selenitireducens MLS10]
gi|297142135|gb|ADH98892.1| tRNA/rRNA methyltransferase (SpoU) [Bacillus selenitireducens
MLS10]
Length = 251
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 82/183 (44%), Gaps = 23/183 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S NP +K KL + R G + G I E +++E L+L +
Sbjct: 4 IASVQNPRIKAWKKL-HTKKGRDKSGLFFIEGDHLIEEAIRSAITIKE-------LILEE 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+PE ++ V V+ V+ +L ++ + A+ K P +D
Sbjct: 56 NQSLPEAWEDPEVPVVWVTQPVLNELCETETPQGFAAVC-EKPPLVNLPLDDG------- 107
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
R L +DG+QDPGNLG ++RTA A GV + G D ++ K +R+++G+ F
Sbjct: 108 -------RFLFIDGVQDPGNLGAMIRTAEAAGITGVVIGDGTVDVYNGKVIRSTQGSLFH 160
Query: 262 LPI 264
+P+
Sbjct: 161 IPV 163
>gi|449095310|ref|YP_007427801.1| putative RNA methylase [Bacillus subtilis XF-1]
gi|449029225|gb|AGE64464.1| putative RNA methylase [Bacillus subtilis XF-1]
Length = 248
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 204 FPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
+ ++L++D +QDPGNLGT++RTA A V L G D F+ K LR+++G+ F +P
Sbjct: 100 LATARKVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIP 159
Query: 264 IV 265
+V
Sbjct: 160 VV 161
>gi|421276758|ref|ZP_15727578.1| RNA methyltransferase, TrmH family [Streptococcus mitis SPAR10]
gi|395876039|gb|EJG87115.1| RNA methyltransferase, TrmH family [Streptococcus mitis SPAR10]
Length = 246
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 86/183 (46%), Gaps = 28/183 (15%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS +N VK+ KL Q YR S S L+ G + F ++Q + L
Sbjct: 4 ITSKANSVVKNAKKLHQKK-YRKS--SYLIEGW------HLFEEAVQAGAIIEKIFAL-- 52
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
E E L + TV V+ ++ L+ Q+ + I AI QKE +
Sbjct: 53 -SEYGEKLTDYP-QTVFVAEEILLDLADSQTPQGIVAIV--------------QKEEEQL 96
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
F S + L L+ +QDPGN+GT++RTA A + GV + D +S K LR+ +G+ F
Sbjct: 97 PDFTS-GKYLFLEDVQDPGNVGTMIRTADAAGFSGVIVSSKSADIYSLKTLRSMQGSHFH 155
Query: 262 LPI 264
LPI
Sbjct: 156 LPI 158
>gi|392989008|ref|YP_006487601.1| RNA methyltransferase [Enterococcus hirae ATCC 9790]
gi|392336428|gb|AFM70710.1| RNA methyltransferase [Enterococcus hirae ATCC 9790]
Length = 254
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+LD +QDPGN+GT++RTA AF GV L G D +S K LR+ +G+ + LPI+
Sbjct: 112 LLLDNVQDPGNVGTMIRTADAFGLSGVVLGKGSADIYSTKVLRSMQGSNYHLPIL 166
>gi|126656411|ref|ZP_01727672.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110]
gi|126622097|gb|EAZ92804.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. CCY0110]
Length = 261
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS NP +K KL ++ R L+ GT + Y SL C
Sbjct: 2 ITSIRNPLIKQIRKLHRTKG-RREQNLLLLEGTHLVETAYQEGCSLMTL-----CYTEQW 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ P+ +N+S R V ++ LS + ++ + + + + T++F ++ D
Sbjct: 56 RDRYPQLWENVSKRVKRSELVSIEVLSNITTTVNPDGV----VATALFQPRTEEEITD-- 109
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
LV++ +QDPGNLGT++RTA A + ++L D + K LRAS G+ FQ
Sbjct: 110 -----FQLGLVIERLQDPGNLGTIIRTAAATEIDAIWLSDDSVDIDNPKVLRASAGSWFQ 164
Query: 262 LPI 264
+PI
Sbjct: 165 VPI 167
>gi|440683944|ref|YP_007158739.1| tRNA/rRNA methyltransferase (SpoU) [Anabaena cylindrica PCC 7122]
gi|428681063|gb|AFZ59829.1| tRNA/rRNA methyltransferase (SpoU) [Anabaena cylindrica PCC 7122]
Length = 260
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS N VK KL S+ RH L+ GT + E + N L+ + C
Sbjct: 2 LTSLQNSLVKQIRKLH-STKERHKQELFLLEGTHLLEEAWAVNYPLE-----VVCCTPQW 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
++ P+ D++ + R V S E + AIA P V +I K A +
Sbjct: 56 QMVHPQLWDDVCSRCHRYEIV---------SEEVLSAIATTVQPDGVVAI---AKRAQQQ 103
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+ P +L ++ +QDPGNLGT++RTA A G++L D + K LRAS G F+
Sbjct: 104 TQVPFSGVVLAVETLQDPGNLGTMIRTAAAAGASGLWLSDDSVDLDNPKVLRASAGQWFR 163
Query: 262 L 262
L
Sbjct: 164 L 164
>gi|384176454|ref|YP_005557839.1| YsgA [Bacillus subtilis subsp. subtilis str. RO-NN-1]
gi|349595678|gb|AEP91865.1| YsgA [Bacillus subtilis subsp. subtilis str. RO-NN-1]
Length = 248
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 204 FPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
+ ++L++D +QDPGNLGT++RTA A V L G D F+ K LR+++G+ F +P
Sbjct: 100 LATARKVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIP 159
Query: 264 IV 265
+V
Sbjct: 160 VV 161
>gi|409435809|ref|ZP_11263017.1| rRNA methylase protein [Rhizobium mesoamericanum STM3625]
gi|408752567|emb|CCM74164.1| rRNA methylase protein [Rhizobium mesoamericanum STM3625]
Length = 286
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 100/229 (43%), Gaps = 31/229 (13%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
HVK +TS +NP +K L + R G+ + G + + ++ L
Sbjct: 15 HVKEVTSLANPIIKDIKALSDKKT-REQSGTFMAEGLKLVIDAIELGWMIR-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI------ 191
+ + ++ ++ T+ +V++ S + + ++ P V I
Sbjct: 67 VYAKAAKGKPLVEQMAAKTIASGGLVLE-----VSEKVLSSVTRRDNPQMVVGIFESRWK 121
Query: 192 ---DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFS 248
D++ K + +W + LD ++DPGNLGT++RTA A GV L+ DPFS
Sbjct: 122 PLRDIHPKPGE--TW-------IALDRVRDPGNLGTIIRTADAAGASGVILVGETTDPFS 172
Query: 249 EKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
+ +RA+ G+ F +P+ + V K + ++A H G+ + R +
Sbjct: 173 LETVRATMGSVFAVPVARATPEEFIVWKKHAGVSVVATHLAGSVDYRTI 221
>gi|196011996|ref|XP_002115861.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens]
gi|190581637|gb|EDV21713.1| hypothetical protein TRIADDRAFT_59713 [Trichoplax adhaerens]
Length = 328
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 26/187 (13%)
Query: 110 LVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTV-RVSSVVMKKLS 168
L+ G I+E FN LQ T + D+ E + +IS + ++ + ++
Sbjct: 54 LIDGLNVIKEA--FNAGLQLHTFFYSNDNIFDE-HFSEYIFDISDECLCKIPKWYLNSMT 110
Query: 169 GVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRT 228
VQ++ + A+ K TS F D +D + P L+ D ++DPGNLG ++R+
Sbjct: 111 SVQTNRGVAAL-FFKPKTSSF--DEISMASD-KELLPVT---LICDNVRDPGNLGNIIRS 163
Query: 229 AMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV---------------SGSWYHLE 273
A A V L GC DP+ K +R++ G+ FQLPI S ++Y E
Sbjct: 164 AAAANCSSVILTHGCADPWQPKVMRSASGSQFQLPIYYDITWGQISCSKALKSMNFYLAE 223
Query: 274 VLKDEFQ 280
++D++Q
Sbjct: 224 CMRDQYQ 230
>gi|283795501|ref|ZP_06344654.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
gi|291077166|gb|EFE14530.1| RNA methyltransferase, TrmH family [Clostridium sp. M62/1]
Length = 278
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 34/255 (13%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN VK + + + R G +V G E+ + RT + L
Sbjct: 2 ITSTSNSQVKQVSAIAKKAKARRESGLFIVEGEKMFSEL---PKERLHRTYVTESFLRQQ 58
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
E L TV + VMK ++ Q+ + I A+ + + I +KE D
Sbjct: 59 GEEADRLLAGCRYETV--TGEVMKAMADTQTPQGILALC-RQFSYELSDILGERKEGDEH 115
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+ + ++++L+ +QDPGNLGT+LR GV + D ++ K +R++ G+ ++
Sbjct: 116 TQEKAPAQLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSVYR 175
Query: 262 LPIVSGSWYHLEVLKDEFQ------MKLLAGHAGGNE-----------------EPRQVL 298
+P V ++E L D + ++L A H G + E +
Sbjct: 176 VPFV-----YVEDLADAVRRVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGNEANGLS 230
Query: 299 QLSQELADSFAGVPL 313
+ ELAD++ +P+
Sbjct: 231 DETAELADAYIKIPM 245
>gi|114799377|ref|YP_761548.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
gi|114739551|gb|ABI77676.1| RNA methyltransferase, TrmH family [Hyphomonas neptunium ATCC
15444]
Length = 271
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 92/216 (42%), Gaps = 24/216 (11%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS SNP +K LK + R G L G + E R Q TV ++ D
Sbjct: 8 ITSPSNPLIK-ALKSLERKKERAETGLFLAEGARIVSE--GLARGWQPETV----IIAAD 60
Query: 142 KVEVPEGLDNISTHTVRVSSVVMK------KLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
E P+ D + VVM K++ +++S+ A A + V S+
Sbjct: 61 MAERPQISDLARAAAKAGARVVMAPERLMTKITQKDNAQSVVA-AFRQRHLGVESL---P 116
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
K A + + L ++DPGNLGT+LRTA GV L+ CCDP+S +A+RAS
Sbjct: 117 KPAGTPLY-------IALYEVRDPGNLGTILRTADCAGVSGVILIGTCCDPYSFEAVRAS 169
Query: 256 RGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGN 291
G+ F +P + + M L A G
Sbjct: 170 MGSVFDVPFAHTDFDAFNTWRKGEGMSLTAASVNGT 205
>gi|422418739|ref|ZP_16495694.1| RNA methyltransferase [Listeria seeligeri FSL N1-067]
gi|422421869|ref|ZP_16498822.1| RNA methyltransferase [Listeria seeligeri FSL S4-171]
gi|313633669|gb|EFS00423.1| RNA methyltransferase [Listeria seeligeri FSL N1-067]
gi|313638236|gb|EFS03476.1| RNA methyltransferase [Listeria seeligeri FSL S4-171]
Length = 252
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 31/196 (15%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL- 137
++ I S N VK KL Q+ R G+ LV G F+ L E +R D L
Sbjct: 1 MEQIQSVKNDRVKTWKKL-QTRKGRDKTGTYLVEG---------FH--LVEEAIRQDGLV 48
Query: 138 --LLLDK-VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
LL+ K V VPE + +S+ + +S + + + A+ V
Sbjct: 49 VELLVSKGVSVPEEWLKGNYDVFEISTEISHLISETMTEQGVFAV-------------VT 95
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
E D + ++L++D +QDPGN+GTL+RTA A + V L G D ++ K +R+
Sbjct: 96 TTEPDMMLLYGK--KLLLVDAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRS 153
Query: 255 SRGACFQLPIVSGSWY 270
++G+ F +P++ + +
Sbjct: 154 TQGSHFHIPVIQANLF 169
>gi|28211878|ref|NP_782822.1| 23S rRNA methyltransferase [Clostridium tetani E88]
gi|28204320|gb|AAO36759.1| 23S rRNA methyltransferase [Clostridium tetani E88]
Length = 260
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWY 270
++ D +QDPGN+GT++RTA A G+ + G D ++EK LR+S G+ F +P++ +
Sbjct: 114 ILADRVQDPGNMGTIIRTAHAANASGILITEGTVDVYNEKTLRSSMGSIFYIPVIED--F 171
Query: 271 HLEVLKD 277
L+ +KD
Sbjct: 172 KLDKIKD 178
>gi|258515609|ref|YP_003191831.1| tRNA/rRNA methyltransferase SpoU [Desulfotomaculum acetoxidans DSM
771]
gi|257779314|gb|ACV63208.1| tRNA/rRNA methyltransferase (SpoU) [Desulfotomaculum acetoxidans
DSM 771]
Length = 266
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 24/190 (12%)
Query: 82 ITSTSNP---FVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
ITS NP ++KH K R +R + G ++ G + E S++
Sbjct: 3 ITSMDNPRIRYLKHLAKRR----FRETEGKFIIEGVRFVEEALASAMSVEAVIYSAK--- 55
Query: 139 LLDKVEVPEGLDNISTHTV---RVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
L E L+ I V V+ +++ LS + + + A+ + +PT + I
Sbjct: 56 LFQNNRGKELLECIYKSNVPFWEVTEPILESLSDTATPQGVVAV-IKSVPTGLQEILTRV 114
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
K+ ++++DGIQDPGNLGT++RT+ A V L G D ++ K LRA+
Sbjct: 115 KK----------QLLVLVDGIQDPGNLGTIIRTSDAAGVDAVILSRGTVDLYNPKTLRAT 164
Query: 256 RGACFQLPIV 265
G+ F LP++
Sbjct: 165 MGSLFHLPVI 174
>gi|336433921|ref|ZP_08613729.1| hypothetical protein HMPREF0991_02848 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336015082|gb|EGN44910.1| hypothetical protein HMPREF0991_02848 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 235
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 23/188 (12%)
Query: 147 EGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFP- 205
E LD IS ++V + KK + + S ++ K P V ++ V+Q E
Sbjct: 26 EVLDVISGGDLKVREQIRKK-TEILSDAVFSYVSDTKTPQGVLAV-VHQMEYTLGQMTEG 83
Query: 206 SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI- 264
+I +++LD +QDPGNLGT+ RTA A G+ + C D ++ K +R++ GA +++P
Sbjct: 84 AIPHLMILDNLQDPGNLGTIFRTAEAAGVTGIIMSRDCVDIYNPKTIRSTMGALYRMPFL 143
Query: 265 -VSGSWYHLEVLKDEFQMKLLAGHAGG-----NEEPRQVLQ---------LSQEL---AD 306
V + LK++ +K A H G E+ RQ L +E+ AD
Sbjct: 144 YVDDLKETIHTLKEQ-NIKSYAAHLDGKNTYDKEDYRQGTAFLIGNEGNGLREEIAQCAD 202
Query: 307 SFAGVPLC 314
++ +P+C
Sbjct: 203 TWIRIPMC 210
>gi|321312399|ref|YP_004204686.1| putative RNA methylase [Bacillus subtilis BSn5]
gi|320018673|gb|ADV93659.1| putative RNA methylase [Bacillus subtilis BSn5]
Length = 248
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 204 FPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
+ ++L++D +QDPGNLGT++RTA A V L G D F+ K LR+++G+ F +P
Sbjct: 100 LATARKVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIP 159
Query: 264 IV 265
+V
Sbjct: 160 VV 161
>gi|16079917|ref|NP_390743.1| RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
gi|221310807|ref|ZP_03592654.1| hypothetical protein Bsubs1_15641 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315132|ref|ZP_03596937.1| hypothetical protein BsubsN3_15547 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320050|ref|ZP_03601344.1| hypothetical protein BsubsJ_15453 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324332|ref|ZP_03605626.1| hypothetical protein BsubsS_15612 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402777021|ref|YP_006630965.1| RNA methylase [Bacillus subtilis QB928]
gi|428280340|ref|YP_005562075.1| hypothetical protein BSNT_04181 [Bacillus subtilis subsp. natto
BEST195]
gi|452915074|ref|ZP_21963700.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Bacillus subtilis MB73/2]
gi|81637729|sp|P94538.2|YSGA_BACSU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase YsgA
gi|1770029|emb|CAA99602.1| hypothetical protein [Bacillus subtilis]
gi|2635330|emb|CAB14825.1| putative RNA methylase [Bacillus subtilis subsp. subtilis str. 168]
gi|291485297|dbj|BAI86372.1| hypothetical protein BSNT_04181 [Bacillus subtilis subsp. natto
BEST195]
gi|402482201|gb|AFQ58710.1| Putative RNA methylase [Bacillus subtilis QB928]
gi|407960873|dbj|BAM54113.1| RNA methylase [Bacillus subtilis BEST7613]
gi|407965703|dbj|BAM58942.1| RNA methylase [Bacillus subtilis BEST7003]
gi|452115422|gb|EME05818.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Bacillus subtilis MB73/2]
Length = 248
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 204 FPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
+ ++L++D +QDPGNLGT++RTA A V L G D F+ K LR+++G+ F +P
Sbjct: 100 LATARKVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIP 159
Query: 264 IV 265
+V
Sbjct: 160 VV 161
>gi|222147334|ref|YP_002548291.1| rRNA methylase [Agrobacterium vitis S4]
gi|221734324|gb|ACM35287.1| rRNA methylase [Agrobacterium vitis S4]
Length = 294
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 31/229 (13%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP VK L Q + R + L G + + SL+ L
Sbjct: 23 QVKEVTSLANPIVKDIKALSQKKT-RDETRTFLAEGLKLVIDAVELGWSLR-------YL 74
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI------ 191
+ + ++ I+ TV +V++ S + + +I P V +
Sbjct: 75 IYSKAAKGKPQVERIAARTVAHGGMVLE-----VSEKVMASITRKDNPQMVAGVFDQRWK 129
Query: 192 ---DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFS 248
DV+ E + +W + LD ++DPGNLGT++RTA A GV L+ DPF+
Sbjct: 130 ALKDVSLTEGE--TW-------VALDRVRDPGNLGTIIRTADAAGASGVMLIGDSTDPFA 180
Query: 249 EKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
+ +RA+ G+ F LP+V + K + + ++A H G + R V
Sbjct: 181 METVRATMGSIFALPLVKTTVADFLGWKTKAGVSVVATHLAGAVDYRTV 229
>gi|328545333|ref|YP_004305442.1| TrmH family RNA methyltransferase [Polymorphum gilvum SL003B-26A1]
gi|326415075|gb|ADZ72138.1| RNA methyltransferase, TrmH family [Polymorphum gilvum SL003B-26A1]
Length = 279
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 52/87 (59%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWY 270
+ LD ++DPGNLGT++RTA A GV L+ C DPF+ +A+RA+ G+ F +P+ S
Sbjct: 133 IALDRVRDPGNLGTIIRTADAVGASGVMLVGDCTDPFAVEAVRATMGSLFHVPLARLSTD 192
Query: 271 HLEVLKDEFQMKLLAGHAGGNEEPRQV 297
+ L ++ ++ H G+ + R +
Sbjct: 193 AFKALAAKWPGMVVGTHLEGSVDYRSL 219
>gi|300814789|ref|ZP_07095032.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
836 str. F0141]
gi|300511097|gb|EFK38354.1| RNA methyltransferase, TrmH family [Peptoniphilus sp. oral taxon
836 str. F0141]
Length = 223
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 17/109 (15%)
Query: 185 PTSVFS-IDVNQKEADCRSWFPSIHR--------ILVLDGIQDPGNLGTLLRTAMAFKWG 235
P+ +F+ I +Q S+FP +H+ L LD I D GN+GT++RTA AF
Sbjct: 51 PSHLFNKISDSQSPQGIISYFPMVHKKFQEKSGKFLYLDKISDAGNMGTIIRTADAFNLS 110
Query: 236 GVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHL---EVLKDEFQM 281
GV + CD ++ K +RA+ + F++PI Y L E++K+ F++
Sbjct: 111 GVIISEDSCDIYNPKTIRATMASIFRVPI-----YFLKEDELIKNNFKI 154
>gi|39938630|ref|NP_950396.1| rRNA methylase [Onion yellows phytoplasma OY-M]
gi|39721739|dbj|BAD04229.1| rRNA methylase [Onion yellows phytoplasma OY-M]
Length = 234
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 74/149 (49%), Gaps = 25/149 (16%)
Query: 163 VMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNL 222
+MK+LS Q+ E +AL K PTS E + S +ILVLD IQDP NL
Sbjct: 64 LMKELS--QTKTVFEQMALCK-PTS---------ENNLLS-----DKILVLDDIQDPANL 106
Query: 223 GTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG-SWYHLEVLKDE--- 278
G L+R+A AF + VF D + EK +R+S+GA F L + G + LE +K++
Sbjct: 107 GALMRSASAFGFNQVFASFHSADFYHEKTIRSSQGALFSLSLKRGNTKSFLEEIKEKNYS 166
Query: 279 ----FQMKLLAGHAGGNEEPRQVLQLSQE 303
F K + P++VL L E
Sbjct: 167 IFSAFPQKANITMEDAKKYPKKVLVLGNE 195
>gi|241895044|ref|ZP_04782340.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
gi|241871762|gb|EER75513.1| RNA methyltransferase [Weissella paramesenteroides ATCC 33313]
Length = 259
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 39/58 (67%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
L LD IQDPGN+GT++RTA A + GV G DP+S KALRA +G+ F L +G+
Sbjct: 116 LFLDAIQDPGNVGTMVRTADAAGFTGVVFGHGSVDPYSPKALRAMQGSQFHLTTTTGN 173
>gi|118589655|ref|ZP_01547060.1| rRNA methylase [Stappia aggregata IAM 12614]
gi|118437741|gb|EAV44377.1| rRNA methylase [Labrenzia aggregata IAM 12614]
Length = 275
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 86/203 (42%), Gaps = 21/203 (10%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SNP VK L +R G + G + ++ +
Sbjct: 9 VKQITSHSNPIVKEIKGLVAQRKHRSQSGLFVAEGLKLATDALEAGWGIRYLALG----- 63
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
P+ DN ++ L S+ + A+ P V + Q+
Sbjct: 64 -------PDARDNPVAQKAAAAAKARGALILEVSTAVMSAMTRKDNPQMVVGV-YEQQLL 115
Query: 199 DCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
R PS + V LD ++DPGNLGT++RT A GV L+ C DPF+ +A+RA+ G
Sbjct: 116 GPRDIEPSGTTLWVALDRVRDPGNLGTIIRTVDAVGGAGVMLVGDCTDPFAVEAVRATMG 175
Query: 258 ACFQLPIVSGSWYHLEVLKDEFQ 280
+ F +P+ ++ KDEF+
Sbjct: 176 SLFHVPLA-------KLGKDEFK 191
>gi|401564797|ref|ZP_10805664.1| RNA methyltransferase, TrmH family [Selenomonas sp. FOBRC6]
gi|400188491|gb|EJO22653.1| RNA methyltransferase, TrmH family [Selenomonas sp. FOBRC6]
Length = 285
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+ LD +QDPGN+GT+LRTA A GV LL G D +S K +RA+ G+ F +P V+G
Sbjct: 139 IALDRVQDPGNVGTILRTADAVGVTGVILLCGSADIYSGKVVRATMGSLFHVPFVTG 195
>gi|383419627|gb|AFH33027.1| RNA methyltransferase-like protein 1 [Macaca mulatta]
Length = 420
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
L+ D ++DPGNLGT+LR+A V L GC DP+ K LRA GA FQ+PI++
Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVLRAGMGAHFQVPIIN 267
>gi|384947970|gb|AFI37590.1| RNA methyltransferase-like protein 1 [Macaca mulatta]
gi|387541928|gb|AFJ71591.1| RNA methyltransferase-like protein 1 [Macaca mulatta]
Length = 420
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
L+ D ++DPGNLGT+LR+A V L GC DP+ K LRA GA FQ+PI++
Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVLRAGMGAHFQVPIIN 267
>gi|389857225|ref|YP_006359468.1| rRNA methylase [Streptococcus suis ST1]
gi|417092272|ref|ZP_11957006.1| rRNA methylase [Streptococcus suis R61]
gi|353532841|gb|EHC02510.1| rRNA methylase [Streptococcus suis R61]
gi|353740943|gb|AER21950.1| rRNA methylase [Streptococcus suis ST1]
Length = 246
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 19/117 (16%)
Query: 148 GLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSI 207
GL N++ VSS +M+ L+ ++ + + +A + +P NQ D +
Sbjct: 61 GLSNVTV----VSSDIMQDLADSRTPQGV--VAQLSLP--------NQTLPDVLTG---- 102
Query: 208 HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
+ LVL+ +QDPGN+GT++RTA A + GVFL D ++ K LR+ +G+ F LP+
Sbjct: 103 -KFLVLEDVQDPGNVGTMIRTADAAGFDGVFLSDKSADIYNMKVLRSMQGSHFHLPV 158
>gi|313124170|ref|YP_004034429.1| tRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280733|gb|ADQ61452.1| TRNA/rRNA methyltransferase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 254
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 20/183 (10%)
Query: 83 TSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDK 142
TS +NP +K KL+Q YR G L+ G + E + +E L L +
Sbjct: 5 TSVNNPQIKAIGKLQQKK-YREESGYYLIEGFHLVEEALKASVKYREILATEAALSRLAQ 63
Query: 143 VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRS 202
+ GL +++S V S ++S+ I ++ +NQ E
Sbjct: 64 L----GLAYDEGKLIKISQSVASHFSSTKNSQDI-----------FMTVKINQSE----H 104
Query: 203 WFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
+F S + ++LD + DPGN+GT++RTA A + GV L D ++ K R+ +G+ F L
Sbjct: 105 FFFSYGKWVLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHL 164
Query: 263 PIV 265
++
Sbjct: 165 NLI 167
>gi|428209830|ref|YP_007094183.1| tRNA/rRNA methyltransferase SpoU [Chroococcidiopsis thermalis PCC
7203]
gi|428011751|gb|AFY90314.1| tRNA/rRNA methyltransferase (SpoU) [Chroococcidiopsis thermalis PCC
7203]
Length = 264
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 81/186 (43%), Gaps = 23/186 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S NP VK KL S+ R G L+ GT + E Y L +C+
Sbjct: 2 IASLQNPLVKQMRKLH-SAKQRSQQGVFLLEGTHLLEEAYAAKYPL-------ECVCCTS 53
Query: 142 KVEV--PEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+ + + IS R+ V + E ++AIA P V + Q+ +
Sbjct: 54 QWQENHQQLWQQISQSGARIEIV---------TPEVLQAIATTINPDGVVATATRQQGRE 104
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
P L L+ +QDPGNLGT++RTA A G++L D + K LRAS G
Sbjct: 105 ----VPHTGISLALETLQDPGNLGTIIRTAAAAGASGLWLSRDSVDLDNPKVLRASAGQW 160
Query: 260 FQLPIV 265
F+LP+V
Sbjct: 161 FRLPMV 166
>gi|407005860|gb|EKE21881.1| RNA methyltransferase, TrmH family [uncultured bacterium]
Length = 266
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 19/164 (11%)
Query: 102 YRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSS 161
YR G +V I++ + + +E + D L +KV + + L + VS
Sbjct: 23 YRQLRGEFVVENWKIIKDAFASSIYFKELFLTRD-FLDKNKVALADMLSD-EKRVFLVSE 80
Query: 162 VVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGN 221
+ K LS + SS+ + A V +K+ W I + L+GI DPGN
Sbjct: 81 NIKKNLSSLDSSQGVVA--------------VYEKKEMALDWNKDI---IYLNGINDPGN 123
Query: 222 LGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
LGT+LR+A+AF + L C D ++ K ++A++ A F+L IV
Sbjct: 124 LGTILRSALAFGLKNIVLDEKCTDIYNLKTIQAAKDAIFKLNIV 167
>gi|355568040|gb|EHH24321.1| RNA methyltransferase-like protein 1 [Macaca mulatta]
gi|380814264|gb|AFE79006.1| RNA methyltransferase-like protein 1 [Macaca mulatta]
Length = 420
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
L+ D ++DPGNLGT+LR+A V L GC DP+ K LRA GA FQ+PI++
Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVLRAGMGAHFQVPIIN 267
>gi|109112660|ref|XP_001085109.1| PREDICTED: RNA methyltransferase like 1 isoform 2 [Macaca mulatta]
Length = 420
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
L+ D ++DPGNLGT+LR+A V L GC DP+ K LRA GA FQ+PI++
Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVLRAGMGAHFQVPIIN 267
>gi|298368797|ref|ZP_06980115.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014
str. F0314]
gi|298282800|gb|EFI24287.1| RNA methyltransferase, TrmH family [Neisseria sp. oral taxon 014
str. F0314]
Length = 262
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 42/198 (21%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALV-----------VGTTPIREIYNFNRSL 127
+K ITS N +K+ KL + R + G ++ G TP+ ++Y L
Sbjct: 1 MKLITSAQNDRLKYLSKLLSQAKARRASGQTVLEGVHLLQAYLQAGLTPV-QVYIPESKL 59
Query: 128 QERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQS-SESIEAIALMKIPT 186
Q+R + L L+ +PE V+SV LS + S SE+ + + L+ IP
Sbjct: 60 QQREI----LALI--AALPEQ---------AVTSVANAALSRITSLSEADDIMTLINIPA 104
Query: 187 SVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDP 246
D DC +VLD IQDPGN+GT++R+A A G + + G D
Sbjct: 105 Q----DAWPVNGDC----------VVLDRIQDPGNVGTVMRSAAAAGVGCLVVGIGSADV 150
Query: 247 FSEKALRASRGACFQLPI 264
+S K LRA+ GA F L I
Sbjct: 151 WSPKVLRAAMGAHFLLKI 168
>gi|282882505|ref|ZP_06291126.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B]
gi|281297647|gb|EFA90122.1| RNA methyltransferase, TrmH family [Peptoniphilus lacrimalis 315-B]
Length = 247
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 17/109 (15%)
Query: 185 PTSVFS-IDVNQKEADCRSWFPSIHR--------ILVLDGIQDPGNLGTLLRTAMAFKWG 235
P+ +F+ I +Q S+FP +H+ L LD I D GN+GT++RTA AF
Sbjct: 75 PSHLFNKISDSQSPQGIISYFPMVHKKFQEKSGKFLYLDKISDAGNMGTIIRTADAFNLS 134
Query: 236 GVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHL---EVLKDEFQM 281
GV + CD ++ K +RA+ + F++PI Y L E++K+ F++
Sbjct: 135 GVIISEYSCDIYNPKTIRATMASIFRVPI-----YFLKEDELIKNNFKI 178
>gi|332663063|ref|YP_004445851.1| tRNA/rRNA methyltransferase SpoU [Haliscomenobacter hydrossis DSM
1100]
gi|332331877|gb|AEE48978.1| tRNA/rRNA methyltransferase (SpoU) [Haliscomenobacter hydrossis DSM
1100]
Length = 253
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 25/169 (14%)
Query: 98 QSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDN----IS 153
Q +R L G +RE+ F + ++C+L VPE L+N +
Sbjct: 14 QKKKFRSELQCFLAEGDKIVRELVAFPQW------ELECIL-----AVPEWLENHRGLFA 62
Query: 154 THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVL 213
+ + S+ ++ +E I+ ++ P V +I E D + F S L L
Sbjct: 63 GRKIEIISI---------TTAELEKISTLQTPNQVMAIVKMPSEFDWNTHF-STDLALYL 112
Query: 214 DGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
DGIQDPGNLGT+LR A F VFL P C + ++ K ++A+ G+ ++
Sbjct: 113 DGIQDPGNLGTILRIADWFGILQVFLSPDCVELYNPKVIQATMGSFLRI 161
>gi|302871991|ref|YP_003840627.1| tRNA/rRNA methyltransferase SpoU [Caldicellulosiruptor obsidiansis
OB47]
gi|302574850|gb|ADL42641.1| tRNA/rRNA methyltransferase (SpoU) [Caldicellulosiruptor
obsidiansis OB47]
Length = 270
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 49/220 (22%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYN----------FNRSL 127
V+ I+S N +K KL YR S ++ G ++E N F++
Sbjct: 5 KVEFISSRENECIKRVKKL-NDKKYREEFRSFIIEGLKLVKEAINYQIECINLVIFSQQA 63
Query: 128 QERTVRM--DCLLLLDK------VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAI 179
++R +C LL+ +EVP+ L E I
Sbjct: 64 KDRYQEFYWECKRLLEDGKIKRVIEVPDKL--------------------------FEYI 97
Query: 180 ALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFL 239
A P + + + N + D ++ ++ R++V D +QDPGNLGTL+R A AF + V
Sbjct: 98 ATTSTPQGILA-ECNFVDKDI-NFIKNLKRVVVADKLQDPGNLGTLIRCADAFGFDAVVT 155
Query: 240 LPGCCDPFSEKALRASRGACFQLPIV--SGSWYHLEVLKD 277
G D ++ K +RA+ G+ F L I+ + +++LKD
Sbjct: 156 TKGTVDIYNPKTIRATMGSLFHLQIMREAEEGKLIKILKD 195
>gi|184155768|ref|YP_001844108.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
gi|183227112|dbj|BAG27628.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
Length = 259
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 89/199 (44%), Gaps = 30/199 (15%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
V+ +TS N VK KL Q+ R G L+ G + E +R L E L
Sbjct: 2 VEKLTSVKNARVKEWKKL-QTRKGRKQQGRYLLEGWHLVNEALQADRGLHE--------L 52
Query: 139 LLDKVEVPEGLDNIS--THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
+ K E+ D ++ V+ +M ++ + + I +A +P D++Q
Sbjct: 53 IGTKEELAAHPDIVARFKEVYSVTPAIMAAVTETVTPQGIMVVA--DLP------DLHQV 104
Query: 197 EADCR-SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
D +W L LD +QDPGN+GT++RTA A + GV G D FS K +R+
Sbjct: 105 ATDLSGAW-------LFLDRVQDPGNVGTMVRTADAAGFAGVVAGDGSADLFSPKVVRSM 157
Query: 256 RGACFQLPIVSGS---WYH 271
+G+ F L + G W+
Sbjct: 158 QGSQFHLALYEGDLKKWFE 176
>gi|320529196|ref|ZP_08030288.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas
artemidis F0399]
gi|320138826|gb|EFW30716.1| RNA 2'-O ribose methyltransferase substrate binding [Selenomonas
artemidis F0399]
Length = 277
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+VLD +QDPGN+GT+LRTA+A G+ LL GC D ++ K +RA+ G F + + G
Sbjct: 129 VVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVVRAAMGGLFYMNVAQG 185
>gi|313896326|ref|ZP_07829879.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137
str. F0430]
gi|312975125|gb|EFR40587.1| RNA methyltransferase, TrmH family [Selenomonas sp. oral taxon 137
str. F0430]
Length = 277
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+VLD +QDPGN+GT+LRTA+A G+ LL GC D ++ K +RA+ G F + + G
Sbjct: 129 VVLDRVQDPGNVGTILRTAVAAGASGIVLLRGCADIYNNKVVRAAMGGLFYMNVAQG 185
>gi|123969030|ref|YP_001009888.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
AS9601]
gi|123199140|gb|ABM70781.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
AS9601]
Length = 236
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+LVLD IQDPGN+G L RTA+A +F L G P +K LRAS GA F LP +
Sbjct: 74 VLVLDRIQDPGNMGNLFRTALAAGVNAIF-LAGGAHPLGQKVLRASSGAVFHLPFL 128
>gi|291300541|ref|YP_003511819.1| tRNA/rRNA methyltransferase SpoU [Stackebrandtia nassauensis DSM
44728]
gi|290569761|gb|ADD42726.1| tRNA/rRNA methyltransferase (SpoU) [Stackebrandtia nassauensis DSM
44728]
Length = 236
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Query: 206 SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
++ +VLDGI DPGN GT+LRTA A V G DP++ K +RAS G+ F LP+V
Sbjct: 78 TVRLAVVLDGIADPGNAGTILRTADAAGAQAVVFPHGSVDPYNGKCVRASVGSLFHLPVV 137
Query: 266 SG--SWYHLEVLKDEFQMKLLA 285
G + HL+ L+ + +++LA
Sbjct: 138 RGGDTDEHLDALRAK-GLRILA 158
>gi|430758674|ref|YP_007208630.1| hypothetical protein A7A1_3182 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|430023194|gb|AGA23800.1| Hypothetical protein YsgA [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 248
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 204 FPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
+ ++L++D +QDPGNLGT++RTA A V L G D F+ K LR+++G+ F +P
Sbjct: 100 LATARKVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIP 159
Query: 264 IV 265
+V
Sbjct: 160 VV 161
>gi|344171453|emb|CCA84065.1| putative tRNA/rRNA methyltransferase, SpoU like [Ralstonia syzygii
R24]
Length = 259
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+ITS N KH L S+ R G +++ G I+ L CL+
Sbjct: 1 MKHITSRDNAVFKHLKALSGSTQQRRRAGQSVLDG------IHLVAAYLDAGHTPAQCLV 54
Query: 139 LLDKVEVPEGLDNIS----THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
+ PE ++ H V ++ + +L+ V + I+ + L+ P +
Sbjct: 55 SERHLAHPEVAPLLARLDPQHIVLLADSLFAQLTTVVNG--IDLMVLIDTPEGHLP---H 109
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ E DC ++LDGIQD GN+G++LR A A VF+ GC +S K LRA
Sbjct: 110 RIEHDC----------VILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRA 159
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
+ GA F L IV + E + + LLA
Sbjct: 160 AMGAHFHLNIVEHCTF--ESVHARLHVPLLA 188
>gi|300813179|ref|ZP_07093553.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300495837|gb|EFK30985.1| RNA methyltransferase, TrmH family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 254
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Query: 83 TSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDK 142
TS +NP +K KL+Q YR G L+ G + E + +E L L +
Sbjct: 5 TSVNNPQIKAIGKLQQKK-YREESGYYLIEGFHLVEEALKASVKYREILATEAALSRLAQ 63
Query: 143 VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRS 202
+ GL + +++S V LS ++S+ I ++ +NQ E S
Sbjct: 64 L----GLAYDESKLIKISQSVASHLSSTKNSQDI-----------FMTVKINQSEHFAFS 108
Query: 203 WFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQL 262
+ + ++LD + DPGN+GT++RTA A + GV L D ++ K R+ +G+ F L
Sbjct: 109 Y----GKWVLLDDLADPGNVGTIIRTADAAGFDGVILSNKTVDLYNPKVQRSMQGSQFHL 164
Query: 263 PIV 265
++
Sbjct: 165 NLI 167
>gi|319406413|emb|CBI80053.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella sp.
1-1C]
Length = 280
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 15/220 (6%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SNP +K+ LK R+ + G + + N ++ V + L
Sbjct: 9 VKEITSLSNPIIKY-LKALNKKKNRNRESIFMAEGLKLVIDALNLGWTIHTLIVSKNSL- 66
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++N + + + V+K S + +E+I P +V I Q+
Sbjct: 67 ------SNSIIENTAANAIANGGSVIK-----ASQKVLESITHRDNPQTVIGI-FKQQWH 114
Query: 199 DCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
I + + LD ++DPGNLGT++RTA A G+ L+ DPFS + +RA+ G
Sbjct: 115 SIEKIIRQIDDVYIALDRVRDPGNLGTIIRTADAAGAKGIILIGETTDPFSPETVRATMG 174
Query: 258 ACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
+ F +P+ + F+ ++ H G+ + R +
Sbjct: 175 SIFSVPLYRCNESTFLNWSTHFKGMIVGTHLKGSVDYRTI 214
>gi|227872479|ref|ZP_03990819.1| possible RNA methyltransferase [Oribacterium sinus F0268]
gi|227841680|gb|EEJ51970.1| possible RNA methyltransferase [Oribacterium sinus F0268]
Length = 260
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
K +P G++ + +S M+ +S + + I + L++ P +KE
Sbjct: 57 KGALPRGIEKEDSRICILSKKAMESISTTEHGQGI--LGLLRFP---------KKEK--- 102
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
P L+L+ IQDPGNLGTL RTA A +FL DPFS K +R++ G+ F+
Sbjct: 103 ---PKGDLFLILENIQDPGNLGTLFRTAEAAGVNHIFLSRNTVDPFSPKVVRSTMGSLFR 159
Query: 262 LPI 264
LP
Sbjct: 160 LPF 162
>gi|357023988|ref|ZP_09086154.1| tRNA/rRNA methyltransferase [Mesorhizobium amorphae CCNWGS0123]
gi|355544079|gb|EHH13189.1| tRNA/rRNA methyltransferase [Mesorhizobium amorphae CCNWGS0123]
Length = 285
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 31/236 (13%)
Query: 71 RKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQER 130
R P VK +TS +NP VK +K +R + + G + + + S++
Sbjct: 4 RHAGAPGQVKEVTSLANPLVKD-IKALALKKFRDQQNAFMAEGLKLVIDALDLGWSIK-- 60
Query: 131 TVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS 190
L+ ++ ++ TV V++ S + + AI P V
Sbjct: 61 -----TLIFAKAGRGNAVVEKVAARTVAAGGTVLE-----VSEKVLTAITRRDNPQMVVG 110
Query: 191 I---------DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLP 241
+ D+ ++ D W + LD ++DPGNLGT++RT A GV L+
Sbjct: 111 VFAQKLLPLKDIRARDGDV--W-------VALDRVRDPGNLGTVIRTVDAVGAKGVILVG 161
Query: 242 GCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
DPFS + +RA+ G+ F +P+ + + F + H G + R V
Sbjct: 162 ETTDPFSVETVRATMGSIFAVPVAKATPEAFLAWRKSFSGLVAGTHLKGAVDYRSV 217
>gi|123966693|ref|YP_001011774.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9515]
gi|123201059|gb|ABM72667.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9515]
Length = 296
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 55/97 (56%), Gaps = 11/97 (11%)
Query: 167 LSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLL 226
L+ S+++ + +A + +S+ + ++N ++ +LVLD IQDPGN+G L
Sbjct: 96 LASAVSTKNPDGVAALVQSSSILNFEINNED----------DFMLVLDRIQDPGNMGNLF 145
Query: 227 RTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
RTA+A V LL G +P +K LRAS G+ F LP
Sbjct: 146 RTALAAGVNKV-LLAGGANPLGQKVLRASSGSVFHLP 181
>gi|402898150|ref|XP_003912090.1| PREDICTED: RNA methyltransferase-like protein 1 [Papio anubis]
Length = 420
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
L+ D ++DPGNLGT+LR+A V L GC DP+ K LRA GA FQ+PI++
Sbjct: 212 LICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVLRAGMGAHFQVPIIN 267
>gi|268316035|ref|YP_003289754.1| tRNA/rRNA methyltransferase SpoU [Rhodothermus marinus DSM 4252]
gi|345302340|ref|YP_004824242.1| tRNA/rRNA methyltransferase SpoU [Rhodothermus marinus
SG0.5JP17-172]
gi|262333569|gb|ACY47366.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus DSM 4252]
gi|345111573|gb|AEN72405.1| tRNA/rRNA methyltransferase (SpoU) [Rhodothermus marinus
SG0.5JP17-172]
Length = 257
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 24/127 (18%)
Query: 144 EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSW 203
EV L ++ VS M +LS V++S+ + A+A M+ W
Sbjct: 57 EVQALLARVAVPVAEVSEQEMARLSEVETSQGVLAVARMQ-------------------W 97
Query: 204 FPSIH-----RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
P H RIL LDG+QDPGN GT+LR A F V G D ++ K +RA+ G+
Sbjct: 98 QPEAHLLRCRRILALDGLQDPGNAGTILRAAAWFGIEAVVAGAGTVDLYNPKVVRAAMGS 157
Query: 259 CFQLPIV 265
+ L +V
Sbjct: 158 HWDLALV 164
>gi|427405588|ref|ZP_18895793.1| hypothetical protein HMPREF9161_00153 [Selenomonas sp. F0473]
gi|425708429|gb|EKU71468.1| hypothetical protein HMPREF9161_00153 [Selenomonas sp. F0473]
Length = 273
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 174 ESIEAIALMKIPTSVFSIDVNQKEADCR-SWFPSIHRIL--VLDGIQDPGNLGTLLRTAM 230
ES A+A P V + V ++ A R P + R L LD I+DPGN+G +LRTA
Sbjct: 87 ESFAALAETDTPQGV--LLVAERSAAARLEGLPHVPRPLYVALDRIRDPGNVGVILRTAD 144
Query: 231 AFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
A G LL GC D + K +RA+ GA F +P V+
Sbjct: 145 AAGASGAILLHGCADIYGNKLVRATMGALFHMPFVA 180
>gi|428202320|ref|YP_007080909.1| rRNA methylase [Pleurocapsa sp. PCC 7327]
gi|427979752|gb|AFY77352.1| rRNA methylase [Pleurocapsa sp. PCC 7327]
Length = 264
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS NP VK KL S R H L+ GT + N SL TV C
Sbjct: 2 ITSLQNPLVKQMRKLHSSKGRREQH-LFLLEGTHLLETACESNCSLA--TV---CCTEQW 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ P+ + S RV V + L + ++ + + + T++ ID K A +
Sbjct: 56 RDRYPQLWEKASKQAQRVEIVSPEVLGAITTTVHPDGV----VATALRIIDRPAKLAHLK 111
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
LVL+ +QDPGNLGT++RTA+A G++L D + K LR+S GA F+
Sbjct: 112 LG-------LVLERLQDPGNLGTIIRTAVAAGADGLWLSDDSVDVDNPKVLRSSAGAWFR 164
Query: 262 LPIVSGS 268
LPI+ S
Sbjct: 165 LPIIISS 171
>gi|339501359|ref|YP_004699394.1| tRNA/rRNA methyltransferase SpoU [Spirochaeta caldaria DSM 7334]
gi|338835708|gb|AEJ20886.1| tRNA/rRNA methyltransferase (SpoU) [Spirochaeta caldaria DSM 7334]
Length = 260
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 206 SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
S R++VL I DP NLG ++RTA A W G+ L P DP+S + LR S A F LPI
Sbjct: 104 SGQRLVVLPQITDPENLGAIIRTAAALGWDGILLGPRSADPYSRRVLRCSMAAVFALPIY 163
Query: 266 SGSWYH----LEVLKD---EFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGV 311
+ +H LE+L E +L+ + E RQV +L+ L + G+
Sbjct: 164 T---FHGAGELELLASTGWELWAAMLSPDSCSPESLRQVKKLALMLGNERFGL 213
>gi|322373861|ref|ZP_08048396.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
gi|321277233|gb|EFX54303.1| RNA methyltransferase, TrmH family [Streptococcus sp. C150]
Length = 245
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
+ L+L+ +QDPGN+GT++RTA A + GVFL D +++K LR+ +G+ F LPI G
Sbjct: 103 KYLLLEDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRGP 162
Query: 269 WYHL 272
+ +
Sbjct: 163 IFEM 166
>gi|172035318|ref|YP_001801819.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
gi|354555413|ref|ZP_08974714.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. ATCC 51472]
gi|171696772|gb|ACB49753.1| tRNA/rRNA methyltransferase [Cyanothece sp. ATCC 51142]
gi|353552472|gb|EHC21867.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. ATCC 51472]
Length = 262
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS NP +K KL ++ R H L+ GT + Y N SL C
Sbjct: 2 ITSIRNPLIKQIRKLHRTKG-RREHNLLLLEGTHLVETAYKENCSLITL-----CYTEEW 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ P+ +++S R V L+ + ++ + + + + T+ F ++ D R
Sbjct: 56 QARYPQLWESVSKRVKRSELVSADVLASMTTTVNPDGV----VATARFQPRTEEEITDFR 111
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
L+++ +QDPGNLGT++RTA A + ++L + + K LRAS GA FQ
Sbjct: 112 LG-------LIIERLQDPGNLGTIIRTAAAVEIDAIWLSDDSVEIDNPKVLRASAGAWFQ 164
Query: 262 LPI 264
+PI
Sbjct: 165 VPI 167
>gi|373115054|ref|ZP_09529233.1| hypothetical protein HMPREF0995_00069 [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670749|gb|EHO35825.1| hypothetical protein HMPREF0995_00069 [Lachnospiraceae bacterium
7_1_58FAA]
Length = 276
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 208 HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
R+ VL+GI DP N+G + R+A A GV + P CCDP +A+R S G FQ+P
Sbjct: 121 RRVAVLEGIVDPTNVGAIFRSAAALHMDGVLVTPTCCDPLHRRAVRVSMGTVFQIP 176
>gi|378824621|ref|YP_005187353.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB 23S rRNA Gm2251
2'-O-methyltransferase [Sinorhizobium fredii HH103]
gi|365177673|emb|CCE94528.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB 23S rRNA Gm2251
2'-O-methyltransferase [Sinorhizobium fredii HH103]
Length = 285
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 104/243 (42%), Gaps = 19/243 (7%)
Query: 78 HVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL 137
VK +TS +NP +K L Q +R S + G + + + ++ L
Sbjct: 15 QVKEVTSLANPIIKDIRALAQKK-HRDETRSFMAEGLKLVIDALDLGWKIK-------TL 66
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
+ + ++ ++ V +V++ S + I I P V I Q+
Sbjct: 67 VYAKAAKGKPQVEQVAARAVAKGGLVLEV-----SEKVISTITRRDNPQMVVGI-FEQRY 120
Query: 198 ADCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
+ P V LD ++DPGNLGT++RTA A GV L+ DPFS + +RA+
Sbjct: 121 QPLKDIRPQEGETYVALDRVRDPGNLGTIIRTADAAGASGVILIGETTDPFSLETVRATM 180
Query: 257 GACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQE----LADSFAGVP 312
G+ F +P+ + ++++A H G+ + R + S+ + + AG+P
Sbjct: 181 GSVFAMPVARAGAEEFIRWQKSVSVQVVATHLSGSVDYRTIDYRSKPVVLLMGNEQAGLP 240
Query: 313 LCL 315
+ L
Sbjct: 241 VEL 243
>gi|365845027|ref|ZP_09385826.1| RNA methyltransferase, TrmH family [Flavonifractor plautii ATCC
29863]
gi|364562201|gb|EHM40070.1| RNA methyltransferase, TrmH family [Flavonifractor plautii ATCC
29863]
Length = 275
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 208 HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
R+ VL+GI DP N+G + R+A A GV + P CCDP +A+R S G FQ+P
Sbjct: 120 RRVAVLEGIVDPTNVGAIFRSAAALHMDGVLVTPTCCDPLHRRAVRVSMGTVFQIP 175
>gi|338740007|ref|YP_004676969.1| tRNA/rRNA methyltransferase SpoU [Hyphomicrobium sp. MC1]
gi|337760570|emb|CCB66403.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium sp. MC1]
Length = 274
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 53/94 (56%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWY 270
L L+ I+DPGNLGT++RTA A G+ L+ CDP++ +++RA+ G+ F +P+V
Sbjct: 128 LALEEIRDPGNLGTIIRTADAVGLSGIILVGTTCDPYALESIRATMGSIFAVPLVKLDRE 187
Query: 271 HLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQEL 304
L + +++ H E+ RQ +EL
Sbjct: 188 SFFTLAKAWPGEVIGTHLDAREDFRQTQYNGREL 221
>gi|292670656|ref|ZP_06604082.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
gi|292647683|gb|EFF65655.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
Length = 294
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 91/209 (43%), Gaps = 17/209 (8%)
Query: 64 NDDADDGRKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNF 123
N+ D F ++ ITS SNP + R +S+ H H A G E
Sbjct: 4 NESQDSLGSFFAMNQIQRITSASNPLI------RLTSAVVHVHRRAAKEGLFTA-EGLRL 56
Query: 124 NRSLQERTVRMDCLLLLDKVEVPEG----LDNISTHTVRVSSVVMKKLSGVQSSESIEAI 179
++ C L + E L ++ V+ + S + +ES + I
Sbjct: 57 AEMAAVSNWKIRCAFLTENAVAGERAQALLRILAARRAPVALIPETMFSNLSETESQQGI 116
Query: 180 ALMKIPTSVFSI-DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVF 238
L+ S+ ++ ++ D P ++ +VLD +QDPGN+GT+LRTA A GV
Sbjct: 117 LLLMERGKNMSLRELVRQRNDVD---PPLY--IVLDRVQDPGNVGTILRTADAAGASGVI 171
Query: 239 LLPGCCDPFSEKALRASRGACFQLPIVSG 267
LL G D +S K +RA+ GA F +P G
Sbjct: 172 LLRGSADVYSGKVVRATMGALFHVPFAEG 200
>gi|289434467|ref|YP_003464339.1| TrmH family RNA methyltransferase [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|289170711|emb|CBH27251.1| RNA methyltransferase, TrmH family [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 252
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 92/196 (46%), Gaps = 31/196 (15%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL- 137
++ I S N VK KL Q+ R G+ LV G F+ L E +R D L
Sbjct: 1 MEQIQSVKNDRVKTWKKL-QTRKGRDKTGTYLVEG---------FH--LVEEAIRQDGLV 48
Query: 138 --LLLDK-VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
LL+ K V VPE + +S+ + +S + + + A+ V
Sbjct: 49 VELLVSKGVSVPEEWLKGNYDIFEISTEISHFISETMTEQGVFAV-------------VT 95
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
E D + ++L++D +QDPGN+GTL+RTA A + V L G D ++ K +R+
Sbjct: 96 TTEPDMMLLYGK--KLLLVDAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRS 153
Query: 255 SRGACFQLPIVSGSWY 270
++G+ F +P++ + +
Sbjct: 154 TQGSHFHIPVIQANLF 169
>gi|83749783|ref|ZP_00946757.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
gi|207743229|ref|YP_002259621.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
IPO1609]
gi|83723540|gb|EAP70744.1| 23S rRNA methyltransferase [Ralstonia solanacearum UW551]
gi|206594626|emb|CAQ61553.1| trna/rrna methyltransferase protein [Ralstonia solanacearum
IPO1609]
Length = 259
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 27/211 (12%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K+ITS N KH L S+ R G +++ G I+ L CL+
Sbjct: 1 MKHITSRDNAVFKHLKALSGSTQQRRRAGQSVLDG------IHLVAAYLDAGHTPAQCLV 54
Query: 139 LLDKVEVPEGLDNIS----THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
+ PE ++ H + ++ + L+ V + I+ +A++ P +
Sbjct: 55 SERHLAHPEVAPLLARVDPQHVILLADSLFAPLTTVVN--GIDLMAVIDTPEGHLP---H 109
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
+ E DC ++LDGIQD GN+G++LR A A VF+ GC +S K LRA
Sbjct: 110 RIEHDC----------VILDGIQDAGNVGSILRCAAAAGVRDVFMTTGCAFAWSAKTLRA 159
Query: 255 SRGACFQLPIVSGSWYHLEVLKDEFQMKLLA 285
+ GA F L IV + E + + LLA
Sbjct: 160 AMGAHFHLNIVEHCTF--ESMHARLHVPLLA 188
>gi|347540104|ref|YP_004847529.1| tRNA/rRNA methyltransferase SpoU [Pseudogulbenkiania sp. NH8B]
gi|345643282|dbj|BAK77115.1| tRNA/rRNA methyltransferase SpoU [Pseudogulbenkiania sp. NH8B]
Length = 264
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 87/193 (45%), Gaps = 29/193 (15%)
Query: 75 LPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRM 134
+P+ + +TS N +KH +L Q + R ++ G I+ +L++ V
Sbjct: 1 MPHPYRTLTSPHNDTLKHLARLVQFARDRRKDDVIVLEG------IHLLEAALEQGIVPA 54
Query: 135 DCLL---LLDKVEVPEGLDNI--STHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVF 189
C + L + EV L + + + V ++ KL+ + S+ + A+ P
Sbjct: 55 QCFINEAALGRAEVSALLARLPQTLSPLVVPEALLGKLTSLSSAPELIAVCPRPHPP--- 111
Query: 190 SIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
++ C L+L+ IQDPGN+GT+LR+A A VFL GC D FS
Sbjct: 112 -----RRSGSC----------LLLEDIQDPGNMGTILRSAAASGVMEVFLSKGCADVFSP 156
Query: 250 KALRASRGACFQL 262
K LRA GA F L
Sbjct: 157 KVLRAGMGAHFVL 169
>gi|193617942|ref|XP_001949552.1| PREDICTED: RNA methyltransferase-like protein 1-like [Acyrthosiphon
pisum]
Length = 386
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 99/201 (49%), Gaps = 19/201 (9%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I + P + + ++ R + S L+ G I++ N ++ + + +L+
Sbjct: 79 ILKETCPLLSQAMMEIKNKKRRQQNSSILLEGKRLIQDA--LNAGVKPKQIFFSQKRVLE 136
Query: 142 KVEVPEGLDNI---STHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+ +PE L ++ ST + +++ S ++S+ I + + +IPT ID +
Sbjct: 137 SLCLPEELRDLPASSTIFYKAPYKMIQLFSETETSQGI--MGIFEIPT----IDHRAR-- 188
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
++ FP ++ D I++PGNLG +LRT A V L+ GC + + +K LRA GA
Sbjct: 189 --KNAFPIT---VICDNIREPGNLGAVLRTVTAVGASQVILMKGCTNLWGDKVLRAGCGA 243
Query: 259 CFQLPIVSG-SWYHLEVLKDE 278
F++ I+S SW LE +K +
Sbjct: 244 HFRMKIISDVSWSFLENIKGQ 264
>gi|302380019|ref|ZP_07268498.1| RNA methyltransferase, TrmH family [Finegoldia magna
ACS-171-V-Col3]
gi|302312245|gb|EFK94247.1| RNA methyltransferase, TrmH family [Finegoldia magna
ACS-171-V-Col3]
Length = 234
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 59/100 (59%), Gaps = 7/100 (7%)
Query: 165 KKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGT 224
KK+ SS+ I I+L + I V +KE +S F + I +LDGI + GNLGT
Sbjct: 55 KKIPYTISSKQINKISL---KDKEYVIGVFRKE---KSNFQEKNHI-ILDGIDNMGNLGT 107
Query: 225 LLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
++R+ +AF + + L+ CD ++ KA+RAS GA F+L I
Sbjct: 108 IMRSMLAFGYKDLALISNTCDVYNPKAVRASMGAFFKLNI 147
>gi|300022376|ref|YP_003754987.1| tRNA/rRNA methyltransferase SpoU [Hyphomicrobium denitrificans ATCC
51888]
gi|299524197|gb|ADJ22666.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
ATCC 51888]
Length = 269
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 11/115 (9%)
Query: 151 NISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRI 210
N + VS V+ KL+ + +++ + + + VN E +W
Sbjct: 75 NAGAEVLEVSEAVLGKLASKDNPQTVLGVFRQRFAEPPPAPKVNAGE----TW------- 123
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+ L+ I+DPGNLGT++RTA A GV L+ CDP+S A+RA+ G+ F +PIV
Sbjct: 124 VALEEIRDPGNLGTIVRTADATGCAGVILVGTTCDPYSLDAVRATMGSIFAVPIV 178
>gi|261880182|ref|ZP_06006609.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
gi|270333154|gb|EFA43940.1| SpoU rRNA methylase [Prevotella bergensis DSM 17361]
Length = 269
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 17/208 (8%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S N VK+ + L+Q SS R G +V G +RE+ + + E C +LD
Sbjct: 7 ISSLQNAKVKNLVALQQKSSERRKQGLFVVEG---VRELIHCAHAGYEIENLFCCRDILD 63
Query: 142 KVEVPEGLDNISTHTV--RVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
K LD++ T V+ V +K++ S+E + A +K N+ AD
Sbjct: 64 KNPEAWKLDSLIGQTTIYEVTQAVYEKMAYRGSTEGMMAEVKVK----------NRTLAD 113
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
P I+VL+ ++ PGNLG +LR+A A K V + D F+ +R+S GA
Sbjct: 114 LD--LPESPLIVVLESVEKPGNLGAVLRSADASKADAVIVCNPLTDLFNPNLIRSSIGAI 171
Query: 260 FQLPIVSGSWYHLEVLKDEFQMKLLAGH 287
F +P V+ S E +K+L
Sbjct: 172 FTVPTVACSSQACMNFLKERNIKILTAQ 199
>gi|170016763|ref|YP_001727682.1| rRNA methylase [Leuconostoc citreum KM20]
gi|414596525|ref|ZP_11446099.1| TrmH family RNA methyltransferase [Leuconostoc citreum LBAE E16]
gi|421879127|ref|ZP_16310600.1| TrmH family RNA methyltransferase [Leuconostoc citreum LBAE C11]
gi|169803620|gb|ACA82238.1| rRNA methylase [Leuconostoc citreum KM20]
gi|390446926|emb|CCF26720.1| TrmH family RNA methyltransferase [Leuconostoc citreum LBAE C11]
gi|390482546|emb|CCF28160.1| TrmH family RNA methyltransferase [Leuconostoc citreum LBAE E16]
Length = 257
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 61/124 (49%), Gaps = 18/124 (14%)
Query: 144 EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSW 203
+VP G+ VS V K ++G + + I A + +P F A W
Sbjct: 64 DVPHGVP-----AFEVSEEVAKHIAGTNTPQGI--FAEISLPDKTFDPTYVHDGA----W 112
Query: 204 FPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
L LD IQDPGN+GTL+RTA A + GV L G D +S K +RA +G+ F L
Sbjct: 113 -------LFLDNIQDPGNVGTLVRTADAAGFRGVVLGTGTADAYSPKVVRAMQGSQFHLE 165
Query: 264 IVSG 267
I++G
Sbjct: 166 ILNG 169
>gi|15615674|ref|NP_243978.1| rRNA methylase [Bacillus halodurans C-125]
gi|10175734|dbj|BAB06831.1| rRNA methylase [Bacillus halodurans C-125]
Length = 251
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 119 EIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEA 178
E Y+ + T+ ++ +L+ + V +P + VS VM L+ ++ + I A
Sbjct: 33 EGYHLVEEALKSTITIETILVTESVTLPTAWHVDERDVILVSDRVMADLTETKTPQGIAA 92
Query: 179 IALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVF 238
I IP D S+ L +D +QDPGN+GT++RT A V
Sbjct: 93 IC--HIP-------------DEPSFQELEGMFLCIDHVQDPGNVGTMIRTCDAAGMSAVI 137
Query: 239 LLPGCCDPFSEKALRASRGACFQLPIVSGSWY 270
+ G D ++ K +RAS+G+ F LP++ G +
Sbjct: 138 VSEGSVDIYNSKVVRASQGSIFHLPVIKGDLH 169
>gi|434394178|ref|YP_007129125.1| tRNA/rRNA methyltransferase (SpoU) [Gloeocapsa sp. PCC 7428]
gi|428266019|gb|AFZ31965.1| tRNA/rRNA methyltransferase (SpoU) [Gloeocapsa sp. PCC 7428]
Length = 263
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 81/183 (44%), Gaps = 18/183 (9%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS NP VK KL S+ R G L+ GT ++E L+ + C
Sbjct: 2 LTSLQNPLVKQLRKLH-SAKERREQGVFLIEGTHLLQEACRVKYPLE----TVCC----- 51
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
PE S + + K + S E ++AIA P V + + E R
Sbjct: 52 ---TPEWQS--SNQMLWQQASQQAKRGEIVSEEVLKAIATTVNPDGVVATAPHCLE---R 103
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
P L L+ +QDPGNLGT++RTA A G++L D ++ K LRA+ G F+
Sbjct: 104 IQVPYNGLALALENVQDPGNLGTIIRTAKAAGANGLWLSANSVDIYNPKVLRATAGQWFR 163
Query: 262 LPI 264
LPI
Sbjct: 164 LPI 166
>gi|393757808|ref|ZP_10346632.1| RNA methyltransferase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|393165500|gb|EJC65549.1| RNA methyltransferase [Alcaligenes faecalis subsp. faecalis NCIB
8687]
Length = 260
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 43/64 (67%)
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
++W ++LD +QDPGN+GT+LRTA+A V+L PGC +S+K LR+++GA F
Sbjct: 106 QAWTAPAGSAVLLDQVQDPGNVGTVLRTAVAVGMEAVYLTPGCASVWSQKVLRSAQGAHF 165
Query: 261 QLPI 264
+ I
Sbjct: 166 SIQI 169
>gi|419706885|ref|ZP_14234392.1| rRNA methylase [Streptococcus salivarius PS4]
gi|383283313|gb|EIC81270.1| rRNA methylase [Streptococcus salivarius PS4]
Length = 245
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
+ L+L+ +QDPGN+GT++RTA A + GVFL D +++K LR+ +G+ F LPI G
Sbjct: 103 KYLLLEDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRGP 162
Query: 269 WYHL 272
+ +
Sbjct: 163 IFEM 166
>gi|302383631|ref|YP_003819454.1| tRNA/rRNA methyltransferase SpoU [Brevundimonas subvibrioides ATCC
15264]
gi|302194259|gb|ADL01831.1| tRNA/rRNA methyltransferase (SpoU) [Brevundimonas subvibrioides
ATCC 15264]
Length = 265
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+ L+ ++DPGNLGT++RTA A GGV L+ C DPFS +A+RA+ G+ F + IV
Sbjct: 122 IALEQVRDPGNLGTIIRTADAAGCGGVILIGDCVDPFSVEAVRATMGSVFAVAIV 176
>gi|58337786|ref|YP_194371.1| rRNA methylase [Lactobacillus acidophilus NCFM]
gi|227904436|ref|ZP_04022241.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
gi|58255103|gb|AAV43340.1| rRNA methylase [Lactobacillus acidophilus NCFM]
gi|227867811|gb|EEJ75232.1| RNA methyltransferase [Lactobacillus acidophilus ATCC 4796]
Length = 255
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 21/188 (11%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ I+S +N +K KL Q YR GS L+ G E + Q + L
Sbjct: 1 MQQISSVNNATIKKLAKLNQKK-YRDDEGSYLIEGFHLFEEAIKAGKKYQYILGTEEAL- 58
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
DKV L+ + + ++ + + LS ++S+ I ++KI
Sbjct: 59 --DKVNEDYNLELDGKNVILINKAIARHLSSTKNSQEI--FMVLKI-------------- 100
Query: 199 DCRSWFP-SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
D FP + + ++LD + DPGN+GT++RTA A + GV L D ++ K RA +G
Sbjct: 101 DQPREFPFNYGKWVLLDNLADPGNVGTIIRTADAAGFDGVVLSSESADLYNPKTQRAMQG 160
Query: 258 ACFQLPIV 265
+ F + ++
Sbjct: 161 SQFHIELI 168
>gi|358068541|ref|ZP_09155003.1| hypothetical protein HMPREF9333_01884 [Johnsonella ignava ATCC
51276]
gi|356693358|gb|EHI55037.1| hypothetical protein HMPREF9333_01884 [Johnsonella ignava ATCC
51276]
Length = 300
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 26/208 (12%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYN------------FNRSLQE 129
ITSTSN +K L + SSYR S G +V G +E+ + ++R
Sbjct: 2 ITSTSNKNIKEITALIKKSSYRKSEGCYVVEGIKMFKELPDKYIKKIYISEKLYDRLYYS 61
Query: 130 RTVRMD----CLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIP 185
V+ L DK + N + + + + + V E+ + P
Sbjct: 62 SEVKKSNVSSVLSACDKKH--RAVKNAAKSDDELKAKLDRHGFEVLKQHVFESTSETSTP 119
Query: 186 TSVFSIDVNQK---EADCRSWFPSIH-----RILVLDGIQDPGNLGTLLRTAMAFKWGGV 237
+ ++ Q+ E + + S + ++LVLD IQDPGNLGT++R A GV
Sbjct: 120 QGILAVASKQEYTLEGILKRQYASANIDGALKLLVLDTIQDPGNLGTIIRAGEAAGIDGV 179
Query: 238 FLLPGCCDPFSEKALRASRGACFQLPIV 265
+ G D +S K R++ G+ F++P +
Sbjct: 180 IMGRGTADIYSPKVTRSTMGSLFRVPFI 207
>gi|445371882|ref|ZP_21426041.1| rRNA methyltransferase [Streptococcus thermophilus MTCC 5460]
gi|445387260|ref|ZP_21427759.1| rRNA methyltransferase [Streptococcus thermophilus MTCC 5461]
gi|444751119|gb|ELW75885.1| rRNA methyltransferase [Streptococcus thermophilus MTCC 5461]
gi|444751413|gb|ELW76162.1| rRNA methyltransferase [Streptococcus thermophilus MTCC 5460]
Length = 245
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+ L+L+ +QDPGN+GT++RTA A + GVFL D +++K LR+ +G+ F LPI G
Sbjct: 103 KYLLLEDVQDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRG 161
>gi|118100282|ref|XP_415864.2| PREDICTED: RNA methyltransferase like 1 [Gallus gallus]
Length = 407
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
+L+ D I+DPGNLGT+LR+A V L GC DP+ K LRA GA F++PIV+
Sbjct: 186 VLICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRAGMGAHFRVPIVA 242
>gi|449269855|gb|EMC80596.1| RNA methyltransferase-like protein 1, partial [Columba livia]
Length = 319
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 206 SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
S+ +L+ D I+DPGNLGT+LR+A V L GC DP+ K LRA GA F+LP++
Sbjct: 103 SVPLLLICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRAGMGAHFRLPVL 162
Query: 266 S 266
+
Sbjct: 163 A 163
>gi|312864040|ref|ZP_07724276.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis
F0396]
gi|311100453|gb|EFQ58660.1| RNA methyltransferase, TrmH family [Streptococcus vestibularis
F0396]
Length = 245
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+ L+L+ +QDPGN+GT++RTA A + GVFL D +++K LR+ +G+ F LPI G
Sbjct: 103 KYLLLEDVQDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRG 161
>gi|374307490|ref|YP_005053921.1| RNA methyltransferase, TrmH family [Filifactor alocis ATCC 35896]
gi|291166497|gb|EFE28543.1| RNA methyltransferase, TrmH family [Filifactor alocis ATCC 35896]
Length = 266
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
IL+LD IQDPGN GT++RT++A+ +F G D FS K RAS G LP++
Sbjct: 121 ILLLDQIQDPGNFGTIIRTSLAYGIDAIFFTKGSVDSFSPKVTRASMGGNLCLPLI 176
>gi|55820344|ref|YP_138786.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
gi|116627180|ref|YP_819799.1| rRNA methyltransferase [Streptococcus thermophilus LMD-9]
gi|386085946|ref|YP_006001820.1| RRNA methyltransferase [Streptococcus thermophilus ND03]
gi|386343879|ref|YP_006040043.1| rRNA methyltransferase [Streptococcus thermophilus JIM 8232]
gi|387909044|ref|YP_006339350.1| rRNA methyltransferase [Streptococcus thermophilus MN-ZLW-002]
gi|55736329|gb|AAV59971.1| rRNA methyltransferase [Streptococcus thermophilus LMG 18311]
gi|116100457|gb|ABJ65603.1| rRNA methylase [Streptococcus thermophilus LMD-9]
gi|312277659|gb|ADQ62316.1| RRNA methyltransferase [Streptococcus thermophilus ND03]
gi|339277340|emb|CCC19088.1| rRNA methyltransferase [Streptococcus thermophilus JIM 8232]
gi|387573979|gb|AFJ82685.1| rRNA methyltransferase [Streptococcus thermophilus MN-ZLW-002]
Length = 245
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+ L+L+ +QDPGN+GT++RTA A + GVFL D +++K LR+ +G+ F LPI G
Sbjct: 103 KYLLLEDVQDPGNVGTMIRTADAADYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRG 161
>gi|403387039|ref|ZP_10929096.1| RNA methyltransferase [Clostridium sp. JC122]
Length = 257
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 39/55 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+++D IQDPGNLGT++RTA A G+ + G D ++EK LR++ G+ F +PI+
Sbjct: 111 ILVDRIQDPGNLGTIIRTAHASDCLGIIITKGTVDIYNEKTLRSTMGSIFNIPII 165
>gi|262091708|gb|ACY25298.1| rRNA methylase [uncultured actinobacterium]
Length = 218
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 176 IEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWG 235
+E +A P V +I ++ + + H +++ D I DPGNLGT+LR+A A
Sbjct: 40 MERVASTTTPQPVIAI--AERRSSGLAAVKGAHWVVIADRISDPGNLGTILRSAEAAGVS 97
Query: 236 GVFLLPGCCDPFSEKALRASRGACFQLPIV 265
V L PG + F+ K +RAS GA F +PI+
Sbjct: 98 AVVLTPGTVEAFNPKVVRASAGAMFHVPII 127
>gi|429221090|ref|YP_007182734.1| rRNA methylase [Deinococcus peraridilitoris DSM 19664]
gi|429131953|gb|AFZ68968.1| rRNA methylase [Deinococcus peraridilitoris DSM 19664]
Length = 263
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 42/214 (19%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ ITS NP +K +L+ R G L+ GT RE+ +R+LQ V+++ +
Sbjct: 1 MRVITSPQNPEIKALARLKDRRD-RERDGYFLIEGT---REL---SRALQG-GVQVERVY 52
Query: 139 LLDKVEVPEGLDNIST----HTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
L ++ PEG D + T + VS V KLS ++ + + IA +
Sbjct: 53 LCKELLRPEGHDLLLTLSGPELLTVSRVAFDKLSVRENPDGLVGIAPL------------ 100
Query: 195 QKEADCRSW----FPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
R+W P +LVL G++ PGNLG LLRTA A V + D +
Sbjct: 101 ------RTWDLPALPQRSLVLVLAGLEKPGNLGALLRTADAVGVDAVIIAGRGADLHNPN 154
Query: 251 ALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLL 284
+RAS+G+ F LP L V+ DE + L
Sbjct: 155 VIRASQGSVFSLP--------LTVMTDEDALAFL 180
>gi|375091819|ref|ZP_09738107.1| hypothetical protein HMPREF9709_00969 [Helcococcus kunzii ATCC
51366]
gi|374562706|gb|EHR34033.1| hypothetical protein HMPREF9709_00969 [Helcococcus kunzii ATCC
51366]
Length = 241
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSW 269
IL+LD IQDPGNLGTL+R+A AF + + + D ++EK LR++ G+ F+L ++ +
Sbjct: 103 ILILDKIQDPGNLGTLIRSAEAFGFNTIMSID-SVDFYNEKVLRSTMGSIFRLHLIEAKY 161
Query: 270 YHLEVLKD 277
L L +
Sbjct: 162 EDLSKLNN 169
>gi|403054271|ref|ZP_10908755.1| tRNA/rRNA methyltransferase [Acinetobacter bereziniae LMG 1003]
Length = 258
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 88/185 (47%), Gaps = 26/185 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL-- 139
+ S NP +KH L + ++YR G ++ GT + + + E+ +++ +
Sbjct: 6 LESKDNPKIKHLRGLIEQNTYRKKQGQTVLEGT-------HLSLAWLEKGRKINSIFTTE 58
Query: 140 --LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
LD ++ E +D +S + K LS + ++ + +A++ +P+S +++ ++
Sbjct: 59 HALDHEDLGEIIDQYQGMVFVISEALYKDLSTLGTT--LACLAIVDLPSSTQALNFSED- 115
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
L+L+ +QDPGN+GTLLR+A A + G +S + LRA G
Sbjct: 116 ------------TLILENVQDPGNVGTLLRSAAAAGIEQIVCTKGSASLWSPRVLRAGMG 163
Query: 258 ACFQL 262
A F L
Sbjct: 164 AHFSL 168
>gi|347548599|ref|YP_004854927.1| putative rRNA methylase [Listeria ivanovii subsp. ivanovii PAM 55]
gi|346981670|emb|CBW85641.1| Putative rRNA methylase [Listeria ivanovii subsp. ivanovii PAM 55]
Length = 252
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 31/196 (15%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCL- 137
++ I S N VK KL Q+ R G+ LV G F+ L E +R D L
Sbjct: 1 MEQIQSVKNDRVKTWKKL-QTRKGRDKTGTYLVEG---------FH--LVEEALRQDGLV 48
Query: 138 --LLLDK-VEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
LL+ K V VPE + + +S+ + +S + + + A+ V
Sbjct: 49 LELLVSKDVSVPEEWLKGNYDVLEISTEISHFISETMTEQGVFAV-------------VA 95
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
E D + ++L++D +QDPGN+GTL+RTA A + V L G D ++ K +R+
Sbjct: 96 TTEPDMMLLYGK--KLLLVDAVQDPGNVGTLIRTADAAGYDAVILGRGSADLYNPKVIRS 153
Query: 255 SRGACFQLPIVSGSWY 270
++G+ F +P++ + +
Sbjct: 154 AQGSHFHIPVIQANLF 169
>gi|116618817|ref|YP_819188.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
gi|381337126|ref|YP_005174901.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides J18]
gi|116097664|gb|ABJ62815.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
gi|356645092|gb|AET30935.1| rRNA methylase [Leuconostoc mesenteroides subsp. mesenteroides J18]
Length = 257
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 9/100 (9%)
Query: 172 SSESIEAIALMKIPTSVFS-IDVNQKEADCRSWFPS-IH--RILVLDGIQDPGNLGTLLR 227
S E + IA P +F+ I + +K D PS +H L+LD IQDPGN+GTL+R
Sbjct: 75 SEEVAKHIAGTNTPQGIFAEISLPEKTFD-----PSYVHDGAWLLLDKIQDPGNVGTLVR 129
Query: 228 TAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
TA A + GV L G D F+ K +RA +G+ F L +++G
Sbjct: 130 TADAAGFKGVVLGAGTADAFAPKVVRAMQGSQFHLEVLNG 169
>gi|73541555|ref|YP_296075.1| tRNA/rRNA methyltransferase SpoU [Ralstonia eutropha JMP134]
gi|72118968|gb|AAZ61231.1| tRNA/rRNA methyltransferase (SpoU) [Ralstonia eutropha JMP134]
Length = 261
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 19/188 (10%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K++TS N KH L S+ R G +L+ G + + +L + +
Sbjct: 1 MKHVTSRDNALFKHLKALATSTHQRRKAGQSLLDG---VHLAQAYVAALGQPVSCVVSER 57
Query: 139 LLDKVEVPEGLDNISTHTVRV-SSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
D EV L + + V V + V+ ++SGV + I+ + +++ P+ + E
Sbjct: 58 HYDHAEVAPLLAAVDSQRVVVLADVLFTQVSGVVNG--IDLMLVIETPSGHLPARI---E 112
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
DC ++LDG+QD GN+G++LR+A A FL GC +S K LRA G
Sbjct: 113 EDC----------IILDGLQDAGNVGSILRSAAAAGIRHAFLGTGCAFAWSVKTLRAGMG 162
Query: 258 ACFQLPIV 265
A F L IV
Sbjct: 163 ANFHLNIV 170
>gi|433625029|ref|YP_007258659.1| tRNA/rRNA methyltransferase [Mycoplasma cynos C142]
gi|429535055|emb|CCP24557.1| tRNA/rRNA methyltransferase [Mycoplasma cynos C142]
Length = 244
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 207 IHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
I +++ L+ +QDPGN+GT++R A AF + V + D F++K +RAS+GA F+L I+
Sbjct: 95 IKKVVALNNLQDPGNVGTIIRIAKAFNFDTVII--ENLDVFNDKVIRASQGALFKLNIIE 152
Query: 267 GSWYHLEVLK 276
+ E++K
Sbjct: 153 TNDLESELIK 162
>gi|227431096|ref|ZP_03913154.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227353136|gb|EEJ43304.1| RNA methyltransferase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 257
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 9/100 (9%)
Query: 172 SSESIEAIALMKIPTSVFS-IDVNQKEADCRSWFPS-IH--RILVLDGIQDPGNLGTLLR 227
S E + IA P +F+ I + +K D PS +H L+LD IQDPGN+GTL+R
Sbjct: 75 SEEVAKHIAGTNTPQGIFAEISLPEKTFD-----PSYVHDGAWLLLDKIQDPGNVGTLVR 129
Query: 228 TAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
TA A + GV L G D F+ K +RA +G+ F L +++G
Sbjct: 130 TADAAGFKGVVLGAGTADAFAPKVVRAMQGSQFHLEVLNG 169
>gi|197301328|ref|ZP_03166413.1| hypothetical protein RUMLAC_00059 [Ruminococcus lactaris ATCC
29176]
gi|197299646|gb|EDY34161.1| putative RNA methyltransferase, TrmH family, group 3 [Ruminococcus
lactaris ATCC 29176]
Length = 279
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 89/193 (46%), Gaps = 18/193 (9%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN +K KL++ S R LV G + EI +ER R+ +
Sbjct: 2 ITSTSNAQIKELAKLQKKSRLRDERRIFLVEGPRMVEEIP------KERIERLYISESFE 55
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIA-----LMKIPTSVFSIDVNQK 196
+ + P + + +S V +S ++ + I A+ M+ ++ +K
Sbjct: 56 R-KNPAYIRELGMPAEVLSDPVFSYVSDTKNPQGILAVVKRLEYTMEDVLGKSALKCEEK 114
Query: 197 EADCRSWFPSIHRI-----LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
+ + P H+I +VLD +QDPGNLGT+ RTA A G+ L D ++ K
Sbjct: 115 SGE-KEKNPENHQIRVPHVIVLDNLQDPGNLGTIFRTAEAAGATGILLSSDSVDVYNPKV 173
Query: 252 LRASRGACFQLPI 264
+R++ GA F++P
Sbjct: 174 IRSTMGAVFRMPF 186
>gi|449480312|ref|XP_002196211.2| PREDICTED: RNA methyltransferase-like protein 1 [Taeniopygia
guttata]
Length = 301
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 40/61 (65%)
Query: 206 SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
S+ +L+ D I+DPGNLGT+LR+A V L GC DP+ K LRA GA F++PI+
Sbjct: 203 SLPLLLICDNIRDPGNLGTILRSAAGAGCEKVLLTKGCVDPWEPKVLRAGMGAHFRVPII 262
Query: 266 S 266
+
Sbjct: 263 A 263
>gi|25011695|ref|NP_736090.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
NEM316]
gi|24413235|emb|CAD47314.1| Unknown [Streptococcus agalactiae NEM316]
Length = 247
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
R LVL+ +QDPGNLGT++RTA A + VFL D +++K LR+ +G+ F LP+
Sbjct: 104 RFLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPV 159
>gi|414159201|ref|ZP_11415491.1| hypothetical protein HMPREF9188_01765 [Streptococcus sp. F0441]
gi|410868198|gb|EKS16166.1| hypothetical protein HMPREF9188_01765 [Streptococcus sp. F0441]
Length = 246
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 89/187 (47%), Gaps = 36/187 (19%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS +N VK+ KL Q YR S + L+ G + F ++Q VR++ + L
Sbjct: 4 ITSKANSVVKNAKKLHQKK-YRKS--AYLIEGW------HLFEEAVQA-GVRIEKIFAL- 52
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA--- 198
E G + T+ VS +++ L+ Q+ + I A+ QKE
Sbjct: 53 --ESYRGQLAAFSQTIWVSEEILRDLADTQTPQGIVAVI--------------QKEEVGL 96
Query: 199 -DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
D R + L L+ +QDPGN+GT++RTA A + GV + D +S K LR+ +G
Sbjct: 97 PDFRQG-----KFLFLENVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSMQG 151
Query: 258 ACFQLPI 264
+ F LPI
Sbjct: 152 SHFHLPI 158
>gi|193214880|ref|YP_001996079.1| tRNA/rRNA methyltransferase SpoU [Chloroherpeton thalassium ATCC
35110]
gi|193088357|gb|ACF13632.1| tRNA/rRNA methyltransferase (SpoU) [Chloroherpeton thalassium ATCC
35110]
Length = 272
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 195 QKEADCRSWFPSIHR-----ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
Q +AD S F + +L+ DGIQDPGN GT++RTA F +F D F+
Sbjct: 108 QPKADEASVFQQLEEKKTALVLIWDGIQDPGNAGTMIRTAAWFGADAIFASHDSVDFFNP 167
Query: 250 KALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHA 288
K +RAS G+ F LP++ + L + DE + K L +A
Sbjct: 168 KVVRASAGSLFALPLIKSA--SLGFVVDELKQKRLTVYA 204
>gi|381183116|ref|ZP_09891878.1| RNA methyltransferase, TrmH family [Listeriaceae bacterium TTU
M1-001]
gi|380316986|gb|EIA20343.1| RNA methyltransferase, TrmH family [Listeriaceae bacterium TTU
M1-001]
Length = 251
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 42/60 (70%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
+ L+ DG+QDPGN+GTL+RTA A + V L G D ++ K +R+++G+ F +P++ G+
Sbjct: 107 KFLLADGVQDPGNVGTLIRTADAAGYDAVILGKGSADLYNPKVIRSTQGSHFHIPVIQGN 166
>gi|227530492|ref|ZP_03960541.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
gi|227349597|gb|EEJ39888.1| RNA methyltransferase [Lactobacillus vaginalis ATCC 49540]
Length = 258
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 19/189 (10%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
++ +TS N VK+ KL Q+ YR G+ L+ G + N ++Q + +
Sbjct: 1 MEKLTSIHNQHVKNWKKL-QTKKYRRQTGTYLLDGWHLV------NEAVQSGVQILQLIG 53
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
+++ L++++ V+ VM+ ++ + + I A+ + +P + D+ E+
Sbjct: 54 TSEQLAAHSDLNSLTNEVYEVTEEVMQHITDTVTPQGIAAV--VPLPDAHKVPDM---ES 108
Query: 199 DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
W L LD +QDPGN+GT++RTA A + GV + D FS K +R+ +G+
Sbjct: 109 LHGGW-------LFLDRVQDPGNVGTMVRTADAAGFAGVVVSHRSADIFSPKVIRSMQGS 161
Query: 259 CFQLPIVSG 267
F L + G
Sbjct: 162 QFHLKLYEG 170
>gi|410594987|ref|YP_006951714.1| SpoU rRNA Methylase family [Streptococcus agalactiae SA20-06]
gi|421532173|ref|ZP_15978542.1| RNA methyltransferase [Streptococcus agalactiae STIR-CD-17]
gi|403642681|gb|EJZ03507.1| RNA methyltransferase [Streptococcus agalactiae STIR-CD-17]
gi|410518626|gb|AFV72770.1| SpoU rRNA Methylase family [Streptococcus agalactiae SA20-06]
Length = 247
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
R LVL+ +QDPGNLGT++RTA A + VFL D +++K LR+ +G+ F LP+
Sbjct: 104 RFLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPV 159
>gi|431806651|ref|YP_007233552.1| hypothetical protein B488_13050 [Liberibacter crescens BT-1]
gi|430800626|gb|AGA65297.1| hypothetical protein B488_13050 [Liberibacter crescens BT-1]
Length = 280
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 92/200 (46%), Gaps = 24/200 (12%)
Query: 72 KFALP-YHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRS---- 126
KF L +KNI S SNP +K+ L + R G + G I + N S
Sbjct: 3 KFYLKKVKIKNINSVSNPLIKNIRALTRKKE-RKKAGVFIAEGLKLIIDAINLGWSATML 61
Query: 127 LQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMK-IP 185
+ ++++ + LL ++ + VS +M LS + +++ I + IP
Sbjct: 62 VYTKSMKENSELLQTTIQAITS----ELLIIEVSEKIMSSLSRRDNPQNVLGIFTQRLIP 117
Query: 186 TSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCD 245
+I ++ +W + LD I+DPGNLGT++RT A GV L+ D
Sbjct: 118 LQNITIKGDE------TW-------VALDRIRDPGNLGTIIRTIDASGASGVILIGETTD 164
Query: 246 PFSEKALRASRGACFQLPIV 265
P+ + +RA+ G+ F++PIV
Sbjct: 165 PYGIETVRATMGSIFKVPIV 184
>gi|357057540|ref|ZP_09118399.1| hypothetical protein HMPREF9334_00115 [Selenomonas infelix ATCC
43532]
gi|355375199|gb|EHG22488.1| hypothetical protein HMPREF9334_00115 [Selenomonas infelix ATCC
43532]
Length = 276
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
+ LD +QDPGN+GT+LRTA A GV LL G D +S K +RA+ GA F +P+
Sbjct: 129 IALDRVQDPGNVGTILRTADAIGATGVILLHGSVDIYSGKVVRATMGALFHVPL 182
>gi|254527140|ref|ZP_05139192.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9202]
gi|221538564|gb|EEE41017.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9202]
Length = 237
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+LVLD IQDPGN+G L RTA+A +F L G P +K LRAS GA F LP +
Sbjct: 74 VLVLDRIQDPGNMGNLFRTALAAGVDAIF-LAGGAHPLGQKVLRASSGAVFHLPFL 128
>gi|218247732|ref|YP_002373103.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 8801]
gi|218168210|gb|ACK66947.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8801]
Length = 260
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 27/189 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS NP VK +L ++ R L GT + N SL DCL
Sbjct: 2 ITSLKNPLVKQIRQLHRTKG-RREQNLLLFEGTHLLETACEVNCSL-------DCLCYTA 53
Query: 142 KVE--VPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+ + P+ + + R+ V S E ++A+A P V + VN K +
Sbjct: 54 QWQSRYPQLWELATQKAQRIELV---------SPEVLQALATTVNPDGVIATAVNPKISK 104
Query: 200 CRSWFPSIHRI---LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
P+I L+L+ +QDPGNLGT++RTA+A + G++L D + K LR+S
Sbjct: 105 -----PTIADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKVLRSSA 159
Query: 257 GACFQLPIV 265
GA F +P++
Sbjct: 160 GAWFHVPLI 168
>gi|312796260|ref|YP_004029182.1| 23S rRNA methyltransferase [Burkholderia rhizoxinica HKI 454]
gi|312168035|emb|CBW75038.1| 23S rRNA methyltransferase (EC 2.1.1.-) [Burkholderia rhizoxinica
HKI 454]
Length = 268
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 84/191 (43%), Gaps = 32/191 (16%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
+K ITS NP KH LK + + G AL+ G + E Y + V + L
Sbjct: 10 MKTITSRDNPLFKH-LKALTVPAQQRKRGQALLEGLH-LAEAYLDSVGQPAHCVLTESAL 67
Query: 139 L-LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK- 196
+ ++ LD + VR S V+ +LS + + I F +DV +
Sbjct: 68 AQVQTAQIVARLD--PSRVVRFSDVLFSQLSTLVNGIGI-----------AFVVDVRPRP 114
Query: 197 -----EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
EA C +VLDG+QD GN+G++LR+A A G VF PG +S K
Sbjct: 115 LPERVEATC----------VVLDGVQDAGNVGSILRSAAAAGIGDVFCSPGTAHAWSPKV 164
Query: 252 LRASRGACFQL 262
LRA GA F L
Sbjct: 165 LRAGMGAQFLL 175
>gi|257060931|ref|YP_003138819.1| tRNA/rRNA methyltransferase SpoU [Cyanothece sp. PCC 8802]
gi|256591097|gb|ACV01984.1| tRNA/rRNA methyltransferase (SpoU) [Cyanothece sp. PCC 8802]
Length = 260
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 27/189 (14%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS NP VK +L ++ R L GT + N SL DCL
Sbjct: 2 ITSLKNPLVKQIRQLHRTKG-RREQNLLLFEGTHLLETACEVNCSL-------DCLCYTA 53
Query: 142 KVE--VPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
+ + P+ + + R+ V S E ++A+A P V + VN K +
Sbjct: 54 QWQSRYPQLWELATQKAQRIELV---------SPEVLQALATTVNPDGVIATAVNPKISK 104
Query: 200 CRSWFPSIHRI---LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
P+I L+L+ +QDPGNLGT++RTA+A + G++L D + K LR+S
Sbjct: 105 -----PTIADFKIGLILERLQDPGNLGTIIRTAVATEIDGIWLSSDSVDIDNPKVLRSSA 159
Query: 257 GACFQLPIV 265
GA F +P++
Sbjct: 160 GAWFHVPLI 168
>gi|22537746|ref|NP_688597.1| RNA methyltransferase [Streptococcus agalactiae 2603V/R]
gi|76788278|ref|YP_330224.1| RNA methyltransferase [Streptococcus agalactiae A909]
gi|76799024|ref|ZP_00781219.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
18RS21]
gi|339300993|ref|ZP_08650117.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC
13813]
gi|406709989|ref|YP_006764715.1| RNA methyltransferase [Streptococcus agalactiae GD201008-001]
gi|421148074|ref|ZP_15607746.1| RNA methyltransferase [Streptococcus agalactiae GB00112]
gi|424048947|ref|ZP_17786498.1| RNA methyltransferase [Streptococcus agalactiae ZQ0910]
gi|22534636|gb|AAN00470.1|AE014264_25 RNA methyltransferase, TrmH family [Streptococcus agalactiae
2603V/R]
gi|76563335|gb|ABA45919.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae A909]
gi|76585610|gb|EAO62173.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
18RS21]
gi|319745519|gb|EFV97821.1| TrmH family RNA methyltransferase [Streptococcus agalactiae ATCC
13813]
gi|389649569|gb|EIM71046.1| RNA methyltransferase [Streptococcus agalactiae ZQ0910]
gi|401685412|gb|EJS81420.1| RNA methyltransferase [Streptococcus agalactiae GB00112]
gi|406650874|gb|AFS46275.1| RNA methyltransferase [Streptococcus agalactiae GD201008-001]
Length = 247
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
R LVL+ +QDPGNLGT++RTA A + VFL D +++K LR+ +G+ F LP+
Sbjct: 104 RFLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPV 159
>gi|77412543|ref|ZP_00788838.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
CJB111]
gi|77161411|gb|EAO72427.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae
CJB111]
Length = 247
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
R LVL+ +QDPGNLGT++RTA A + VFL D +++K LR+ +G+ F LP+
Sbjct: 104 RFLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPV 159
>gi|322517494|ref|ZP_08070367.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
49124]
gi|322123976|gb|EFX95535.1| TrmH family RNA methyltransferase [Streptococcus vestibularis ATCC
49124]
Length = 245
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+ L+L+ +QDPGN+GT++RTA A + GVFL D +++K LR+ +G+ F LPI G
Sbjct: 103 KYLLLEDVQDPGNVGTMIRTADAAGYDGVFLSDKSADIYNQKTLRSMQGSHFHLPIYRG 161
>gi|224824152|ref|ZP_03697260.1| tRNA/rRNA methyltransferase (SpoU) [Pseudogulbenkiania ferrooxidans
2002]
gi|224603571|gb|EEG09746.1| tRNA/rRNA methyltransferase (SpoU) [Pseudogulbenkiania ferrooxidans
2002]
Length = 264
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 29/193 (15%)
Query: 75 LPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRM 134
+P+ +++TS N +KH +L Q + R ++ G I+ +L++ V
Sbjct: 1 MPHPYRSLTSPHNDTLKHLARLVQFARDRRKDDVIVLEG------IHLLEAALEQGIVPA 54
Query: 135 DCLL---LLDKVEVPEGLDNI--STHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVF 189
C + L + EV L + + + V ++ KL+ + S+ + A+ P
Sbjct: 55 QCFINEAALGRAEVSVLLARLPQTLSPLVVPEALLGKLTSLSSAPELIAVCPRPHPP--- 111
Query: 190 SIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
++ C L+L+ IQDPGN+GT+LR+A A VFL GC D FS
Sbjct: 112 -----RRSGSC----------LLLEDIQDPGNMGTILRSAAASGVMEVFLSKGCADVFSP 156
Query: 250 KALRASRGACFQL 262
K LRA GA F L
Sbjct: 157 KVLRAGMGAHFVL 169
>gi|312865883|ref|ZP_07726104.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415]
gi|311098287|gb|EFQ56510.1| RNA methyltransferase, TrmH family [Streptococcus downei F0415]
Length = 252
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
LVL+ IQDPGNLGT++RTA A + VF+ D ++ K LR+ +G+ F LPI GS
Sbjct: 111 LVLEDIQDPGNLGTMIRTADAAAYQAVFISDKSADIYNSKTLRSMQGSHFHLPIYRGS 168
>gi|283781122|ref|YP_003371877.1| tRNA/rRNA methyltransferase SpoU [Pirellula staleyi DSM 6068]
gi|283439575|gb|ADB18017.1| tRNA/rRNA methyltransferase (SpoU) [Pirellula staleyi DSM 6068]
Length = 278
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 38/59 (64%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGS 268
ILVL +QDP NLG++LR+A AF GV L P C DPF+ + +R S G+ +PI S
Sbjct: 130 ILVLAEVQDPTNLGSILRSAAAFGCRGVVLGPRCADPFARRVIRVSMGSALTIPITVSS 188
>gi|320162047|ref|YP_004175272.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
gi|319995901|dbj|BAJ64672.1| putative RNA methyltransferase [Anaerolinea thermophila UNI-1]
Length = 265
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 2/62 (3%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI--VSG 267
+++ D ++DPGNLGTLLR+A A V+L PG D FS K LRA GA F+LP+ VS
Sbjct: 116 VVIADNLRDPGNLGTLLRSAAAAGAQTVWLTPGTVDAFSPKVLRAGMGAHFRLPVQEVSL 175
Query: 268 SW 269
W
Sbjct: 176 EW 177
>gi|89893016|ref|YP_516503.1| hypothetical protein DSY0270 [Desulfitobacterium hafniense Y51]
gi|89332464|dbj|BAE82059.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 285
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS N VK+ + L + +R +G L+ G + E L + +C
Sbjct: 16 LTSLQNEQVKYVVNLHKRK-FREENGEFLIEGWRFVEEGLARGAHLTKVFFCSEC----- 69
Query: 142 KVE----VPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
K E + E L + V V++K+S ++ + I +A++K + +
Sbjct: 70 KNESWPQLAEALKVKGVPVIEVDERVLRKMSDTENPQGI--LAVVKQSRWTWDDFIEIVN 127
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
RS P + L+LDG+QDPGN GT+LRTA+A V L G D ++ K LR++ G
Sbjct: 128 PAGRSAIPML---LILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRSTMG 184
Query: 258 ACFQLPIVS 266
A F L I +
Sbjct: 185 AIFSLNIAT 193
>gi|418055780|ref|ZP_12693834.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
1NES1]
gi|353210058|gb|EHB75460.1| tRNA/rRNA methyltransferase (SpoU) [Hyphomicrobium denitrificans
1NES1]
Length = 270
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 23/121 (19%)
Query: 151 NISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRI 210
N + + VS V+ KL+ + +++ VF Q+ AD P R+
Sbjct: 75 NAGSEVLEVSEAVLAKLASKDNPQTV---------LGVF----RQRFADP----PGASRV 117
Query: 211 ------LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
L L+ I+DPGNLGT++RTA A GV L+ CDP+S + +RA+ G+ F +PI
Sbjct: 118 RADTTWLALEEIRDPGNLGTIIRTADAVGCAGVILVGTTCDPYSLETIRATMGSIFAVPI 177
Query: 265 V 265
V
Sbjct: 178 V 178
>gi|319403499|emb|CBI77078.1| tRNA/rRNA methyltransferase protein, TrmH family [Bartonella
rochalimae ATCC BAA-1498]
Length = 280
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 15/187 (8%)
Query: 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLL 138
VK ITS SNP +K+ L + + R+ + G + + N ++ V + L
Sbjct: 9 VKEITSLSNPIIKYFKALDKKKN-RNRENIFMAEGLKLVIDALNLGWTIHTLIVSKNSL- 66
Query: 139 LLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEA 198
++N + +T+ V+K S + +E+I P +V I Q+
Sbjct: 67 ------SNSTIENTAANTIANGGFVIK-----ASQKVLESITHRDNPQTVIGI-FKQQWH 114
Query: 199 DCRSWFPSIHRILV-LDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
I + + LD ++DPGNLGT++RT A G+ L+ DPFS + +RA+ G
Sbjct: 115 SIEKIIRQIGDVYIALDRVRDPGNLGTIIRTVDAAGAKGIILIGETTDPFSPETVRATMG 174
Query: 258 ACFQLPI 264
+ F +P+
Sbjct: 175 SIFSVPL 181
>gi|388258638|ref|ZP_10135813.1| rRNA methylase [Cellvibrio sp. BR]
gi|387937397|gb|EIK43953.1| rRNA methylase [Cellvibrio sp. BR]
Length = 242
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 32/175 (18%)
Query: 95 KLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNIST 154
KL Q YR G LV G I E+ ++ + +C L V E + S+
Sbjct: 10 KLHQKK-YRTEFGHFLVEGEHLILEL---EKAAENNAALQNCELF-----VTENYQHFSS 60
Query: 155 HTVR--VSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILV 212
+ VS M +LS ++ + I A+A + +P++ S NQ E R +
Sbjct: 61 RFKKNLVSEKNMAQLSDTKTPQGIIAVAPL-LPSAKTS---NQNE-----------RAIY 105
Query: 213 LDGIQDPGNLGTLLRTAMAFKWGGVF---LLPGCCDPFSEKALRASRGACFQLPI 264
L +QDPGNLGT+LR+ W G F L PG DP++ K +R+S GA F +P+
Sbjct: 106 LHEVQDPGNLGTILRS---LAWFGNFRCLLSPGSVDPYNPKVIRSSMGAIFHVPM 157
>gi|422758334|ref|ZP_16812096.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322411169|gb|EFY02077.1| 23S rRNA methyltransferase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 245
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 15/109 (13%)
Query: 156 TVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDG 215
V VS+ V+K+L+ S + I IA + +P F D K L+L+
Sbjct: 64 VVLVSADVLKELTDSPSPQGI--IAEVDMPQLAFPTDYQGK-------------YLILED 108
Query: 216 IQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
+QDPGNLGT++RTA A + GVFL D ++ K LR+ +G+ F L I
Sbjct: 109 VQDPGNLGTIIRTADAAGFDGVFLSEKSADVYNSKTLRSMQGSHFHLSI 157
>gi|419780548|ref|ZP_14306395.1| RNA methyltransferase, TrmH family [Streptococcus oralis SK100]
gi|383185146|gb|EIC77645.1| RNA methyltransferase, TrmH family [Streptococcus oralis SK100]
Length = 246
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 90/185 (48%), Gaps = 32/185 (17%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS +N VK+ KL Q YR S + L+ G + F ++Q V ++ + L+
Sbjct: 4 ITSKANSVVKNAKKLHQKK-YRKS--AYLIEGW------HLFEEAVQ-AGVTIEKIFALE 53
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
+ E L S TV VS ++ L+ Q+ + I A+ QKE
Sbjct: 54 SYK--EQLAAFS-QTVWVSEEILLDLADTQTPQGIVAVI--------------QKE---E 93
Query: 202 SWFPSIH--RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
P +H + L L+ +QDPGN+GT++RTA A + GV + D +S K LR+ +G+
Sbjct: 94 VGLPDLHQGKYLFLEDVQDPGNVGTMIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSH 153
Query: 260 FQLPI 264
F LPI
Sbjct: 154 FHLPI 158
>gi|110802916|ref|YP_699167.1| RNA methyltransferase [Clostridium perfringens SM101]
gi|110683417|gb|ABG86787.1| RNA methyltransferase, TrmH family [Clostridium perfringens SM101]
Length = 257
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 40/56 (71%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
++++D +QDPGN+GT++RTA A G+ + G D +++K LR++ G+ F +PIV
Sbjct: 111 VVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIV 166
>gi|432349794|ref|ZP_19593228.1| tRNA/rRNA methyltransferase SpoU [Rhodococcus wratislaviensis IFP
2016]
gi|430770847|gb|ELB86768.1| tRNA/rRNA methyltransferase SpoU [Rhodococcus wratislaviensis IFP
2016]
Length = 282
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 13/166 (7%)
Query: 101 SYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVS 160
+ R G L+ G P+ ++ R+D L D E LD S + VS
Sbjct: 35 AKRTKAGRFLIQGVRPLNLALEHGWPIESLLHRIDGPPLSDWAR--ELLDTRSVEQIGVS 92
Query: 161 SVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPG 220
+ +M +L G +++ + E IA+ K T + D R S+ I+V D PG
Sbjct: 93 AELMAEL-GEKTTTAPELIAVAKTRTP--------RLKDLR--LQSVPLIVVFDRPASPG 141
Query: 221 NLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
NLGTL+R+A AF V ++ DPF +++RAS G+ F +P+V+
Sbjct: 142 NLGTLVRSANAFGADAVVVVGHGADPFDPRSVRASTGSLFAMPVVT 187
>gi|419767644|ref|ZP_14293793.1| RNA methyltransferase, TrmH family [Streptococcus mitis SK579]
gi|383352905|gb|EID30536.1| RNA methyltransferase, TrmH family [Streptococcus mitis SK579]
Length = 246
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 32/185 (17%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITS +N VK+ KL Q YR S + L+ G + F ++Q V ++ + L+
Sbjct: 4 ITSKANSVVKNAKKLHQKK-YRKS--AYLIEGW------HLFEEAVQA-GVTIEKIFALE 53
Query: 142 KVEVPEGLDNIS--THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
D ++ T TV VS ++ L+ Q+ + I A+ QKE
Sbjct: 54 NYR-----DQLAAFTQTVWVSEDILLDLADSQTPQGIVAVV--------------QKEEV 94
Query: 200 CRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
++ F S + L L+ +QDPGN+GT++RTA A + GV + D +S K LR+ +G+
Sbjct: 95 GQTDF-SQGKFLFLEDVQDPGNVGTIIRTADAAGFTGVIVSDKSADIYSLKTLRSMQGSH 153
Query: 260 FQLPI 264
F LPI
Sbjct: 154 FHLPI 158
>gi|77414383|ref|ZP_00790538.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515]
gi|77159573|gb|EAO70729.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae 515]
Length = 229
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
R LVL+ +QDPGNLGT++RTA A + VFL D +++K LR+ +G+ F LP+
Sbjct: 86 RFLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPV 141
>gi|372270320|ref|ZP_09506368.1| rRNA methylase [Marinobacterium stanieri S30]
Length = 242
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 21/171 (12%)
Query: 94 LKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNIS 153
+K Q +R G LV G + E+ ++ ++++ L L + + E ++
Sbjct: 6 IKKLQQKKFRTETGYCLVEGEHLVLEL---QKAAEQQSSLATAELYLTE-QYAEWETDLE 61
Query: 154 THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVL 213
H V +S M +S +S + I A+ +P S Q+E L
Sbjct: 62 VHPV--NSKQMSAISATKSPQGIVAV----VPMSAIQPKSTQQEV-----------ALYF 104
Query: 214 DGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
IQDPGNLGT+LRT F L PG DPF+ K +RAS GA F +P+
Sbjct: 105 HEIQDPGNLGTILRTLAWFGGYRCLLSPGSVDPFNPKVIRASMGAIFHVPM 155
>gi|337747817|ref|YP_004641979.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus mucilaginosus
KNP414]
gi|379718935|ref|YP_005311066.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus mucilaginosus 3016]
gi|386721511|ref|YP_006187836.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus mucilaginosus K02]
gi|336299006|gb|AEI42109.1| tRNA/rRNA methyltransferase (SpoU) [Paenibacillus mucilaginosus
KNP414]
gi|378567607|gb|AFC27917.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus mucilaginosus 3016]
gi|384088635|gb|AFH60071.1| tRNA/rRNA methyltransferase SpoU [Paenibacillus mucilaginosus K02]
Length = 278
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 39/199 (19%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIRE-----------IYNFNRSLQER 130
I S NP VK +L QS R G +V G ++E +Y+ R
Sbjct: 15 IRSLQNPRVKQWTEL-QSRKGREKTGRFVVEGHHLVQEALQSDAMPDTVVYSAER----- 68
Query: 131 TVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFS 190
R C LL++ E +G++ ++ V V+ K + + P VF+
Sbjct: 69 --RDSCRELLEEAE-RQGIECVA-----VGEEVLAKCTDTGT------------PQPVFA 108
Query: 191 I--DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFS 248
+ ++ + D + V+DG+QDPGNLGT++R+A A GV L G D ++
Sbjct: 109 VVPKLSWRPQDLLKASEQGGLVAVVDGMQDPGNLGTIIRSADAVGASGVLLGKGTVDLYN 168
Query: 249 EKALRASRGACFQLPIVSG 267
K +R++ G+ F LP+V G
Sbjct: 169 PKTVRSTMGSMFHLPVVQG 187
>gi|110799854|ref|YP_696569.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
gi|110674501|gb|ABG83488.1| RNA methyltransferase, TrmH family [Clostridium perfringens ATCC
13124]
Length = 257
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS-GS 268
++++D +QDPGN+GT++RTA A G+ + G D +++K LR++ G+ F +PIV S
Sbjct: 111 VVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIVEDNS 170
Query: 269 WYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQ 299
++ LK E +++ G N + LQ
Sbjct: 171 LDFVKSLKKEGYKLVVSSLQGKNNFFEENLQ 201
>gi|423072082|ref|ZP_17060844.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
hafniense DP7]
gi|361857217|gb|EHL09066.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
hafniense DP7]
Length = 271
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 15/189 (7%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
+TS N VK+ + L + +R +G L+ G + E L + +C
Sbjct: 2 LTSLQNEQVKYVVNLHKRK-FREENGEFLIEGWRFVEEGLARGAHLTKVFFCSEC----- 55
Query: 142 KVE----VPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKE 197
K E + E L + V V++K+S ++ + I +A++K + +
Sbjct: 56 KNESWPQLAEALKVKGVPVIEVDERVLRKMSDTENPQGI--LAVVKQSRWTWDDFIEIVN 113
Query: 198 ADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
RS P +L+LDG+QDPGN GT+LRTA+A V L G D ++ K LR++ G
Sbjct: 114 PAGRSAIP---MLLILDGVQDPGNCGTILRTALAAGVTQVCLTEGTVDLYNLKVLRSTMG 170
Query: 258 ACFQLPIVS 266
A F L I +
Sbjct: 171 AIFSLNIAT 179
>gi|449020058|dbj|BAM83460.1| similar to rRNA methylase [Cyanidioschyzon merolae strain 10D]
Length = 454
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 201 RSWFPSIHR---ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
R W P + +L LDG+QDPGNLGT+LR+A A + L C D +S K +RA G
Sbjct: 199 RKWLPWDQQRTLVLFLDGVQDPGNLGTILRSACAAGCRTLLLSDQCVDAWSSKVVRAGMG 258
Query: 258 ACFQLPIVSG-SWYHLEVLKDEFQM 281
A F+ IV S HLE L D M
Sbjct: 259 AHFRQCIVDKVSLEHLECLLDLLVM 283
>gi|15828775|ref|NP_326135.1| tRNA/rRNA methyltransferase [Mycoplasma pulmonis UAB CTIP]
gi|14089718|emb|CAC13477.1| TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pulmonis]
Length = 250
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 35/196 (17%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I+S N +KH KL Q+ YR L+ G I E N Q + + +
Sbjct: 5 ISSKENEKIKHLKKL-QNKKYRQKFNEFLIEGDHLIDEALKNNFECQIYSTKPN------ 57
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIP-TSVFSIDVNQKEADC 200
H ++ V+K +S + +SE + IA +KI TS ++++QK
Sbjct: 58 -----------EKHDFLITKEVLKHVSLLVNSE--QKIAKVKIKETSNDFLNIDQKS--- 101
Query: 201 RSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
IL L+ +QDP N+GTLLR+A++F + + + D ++ K +RAS+GA F
Sbjct: 102 --------NILFLNNLQDPTNIGTLLRSALSFNFKNI--IYDNLDIYNPKIIRASQGAIF 151
Query: 261 QLPIVSGSWYHLEVLK 276
L S H + LK
Sbjct: 152 ALNFFK-SKNHQKTLK 166
>gi|147678286|ref|YP_001212501.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
gi|146274383|dbj|BAF60132.1| rRNA methylases [Pelotomaculum thermopropionicum SI]
Length = 270
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 3/85 (3%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG-- 267
++++DG+QDPGNLGT++R+A A GGV LL G D F+ KALRA+ GA F +P+V
Sbjct: 117 LVIVDGVQDPGNLGTIVRSAGAAGAGGVILLKGTADIFNAKALRATMGAIFYVPVVQDVT 176
Query: 268 SWYHLEVLKDEFQMKLLAGHAGGNE 292
S + LK + +K +AG G++
Sbjct: 177 SVEAMTYLK-QLGIKAVAGDPRGDK 200
>gi|78779779|ref|YP_397891.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9312]
gi|78713278|gb|ABB50455.1| tRNA/rRNA methyltransferase (SpoU) [Prochlorococcus marinus str.
MIT 9312]
Length = 237
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGV--FLLPGCCDPFSEKALRASRGACFQLPIVSG 267
+LVL+ IQDPGN+G+L RTA+A GV LL G P S+K LRAS GA F LP +
Sbjct: 74 VLVLERIQDPGNMGSLFRTALA---AGVDAILLAGGAHPLSQKVLRASSGAVFHLPFLRF 130
Query: 268 SWYHLEVL 275
E+L
Sbjct: 131 DGTEEEIL 138
>gi|77405800|ref|ZP_00782884.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B]
gi|77408463|ref|ZP_00785201.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1]
gi|77172905|gb|EAO76036.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae COH1]
gi|77175587|gb|EAO78372.1| RNA methyltransferase, TrmH family [Streptococcus agalactiae H36B]
Length = 229
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 209 RILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
R LVL+ +QDPGNLGT++RTA A + VFL D +++K LR+ +G+ F LP+
Sbjct: 86 RFLVLEDVQDPGNLGTMVRTADAANFDAVFLSQKSADLYNQKTLRSMQGSHFHLPV 141
>gi|399924161|ref|ZP_10781519.1| TrmH family RNA methyltransferase [Peptoniphilus rhinitidis 1-13]
Length = 248
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 10/154 (6%)
Query: 121 YNFNRSLQERTVRMDC-LLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAI 179
Y F +SL+E+ R + L +++K V E + +S K+ + I+
Sbjct: 11 YKFLKSLKEKKYRQEHRLFMVEKPVVIEEASECEVEYIALSEFSYKENKFENILKDIDKD 70
Query: 180 ALMKIPTSVFSIDVNQKEA-DCRSWFPSIHR--------ILVLDGIQDPGNLGTLLRTAM 230
++ +F + K + +++ IHR L LD I++PGNLG ++R+A
Sbjct: 71 KILIFSDKIFDGLCDAKTSPGIIAYYKEIHREFNEKNGKFLYLDDIREPGNLGGIIRSAD 130
Query: 231 AFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
AFK GV + CD ++ K +R+S + F++PI
Sbjct: 131 AFKLDGVIISENSCDLYNPKTVRSSMSSIFKVPI 164
>gi|239830999|ref|ZP_04679328.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
3301]
gi|444309184|ref|ZP_21144824.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum intermedium M86]
gi|239823266|gb|EEQ94834.1| tRNA/rRNA methyltransferase (SpoU) [Ochrobactrum intermedium LMG
3301]
gi|443487575|gb|ELT50337.1| tRNA/rRNA methyltransferase SpoU [Ochrobactrum intermedium M86]
Length = 293
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 17/204 (8%)
Query: 64 NDDADDGRK--FALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIY 121
+DD G++ ++ VK +TS +NP VK L +R G L G + +
Sbjct: 4 DDDFSKGQRAEYSKVGQVKEVTSLTNPIVKDLRSL-ALKKFRDQQGVFLAEGLKLVIDAL 62
Query: 122 NFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIAL 181
E+ R+ L+ + + ++ ++ T +V++ + + + AI
Sbjct: 63 -------EQDWRIKTLVFAKSGKGNKMVEQVAARTFAKGGLVLE-----VTEKIMAAITR 110
Query: 182 MKIPTSVFSIDVNQKEADCRSWFPSIHRI-LVLDGIQDPGNLGTLLRTAMAFKWGGVFLL 240
P V + Q+ S P + + + LD ++DPGNLGT++RTA A GV L+
Sbjct: 111 RDNPQMVVGV-FEQQYRPLASLKPKGNDVYIALDRVRDPGNLGTVIRTADAVSAKGVILI 169
Query: 241 PGCCDPFSEKALRASRGACFQLPI 264
DP+S + +RA+ G+ F +P+
Sbjct: 170 GDTTDPYSLETVRATMGSVFSMPL 193
>gi|150016448|ref|YP_001308702.1| tRNA/rRNA methyltransferase SpoU [Clostridium beijerinckii NCIMB
8052]
gi|149902913|gb|ABR33746.1| tRNA/rRNA methyltransferase (SpoU) [Clostridium beijerinckii NCIMB
8052]
Length = 260
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 110/259 (42%), Gaps = 55/259 (21%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL- 140
I S N K+ KL++ + R ++ G ++E + + V +D L++
Sbjct: 4 IESKENNLFKNTKKLKERKN-RTKTSRYIIEGFRLVQEAF-------KAKVDVDYLIVTE 55
Query: 141 ---DKVEVPEG-LDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
DKV+ G N +SS + K+L ++ + I A+ M S F D
Sbjct: 56 DAHDKVDEFLGKYINGEIKIYEISSNLFKELISTENPQGILAVIKMNTMESKFDGDF--- 112
Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
L+ D +QDPGNLGT++RTA A + L G D ++EK +R++
Sbjct: 113 -------------YLLCDKVQDPGNLGTIIRTAHAAGVQEIILTKGTVDIYNEKTIRSTM 159
Query: 257 GACFQLPI------------VSGSWYHLEVL-----KDEFQMK-----LLAGHAGGNEEP 294
G+ F +PI + G ++L V K+ FQ LL GN
Sbjct: 160 GSIFYIPIYYDDENLSLVKELKGKGFNLVVTSLDTDKNFFQADLRGRVLLTVGNEGNGVS 219
Query: 295 RQVLQLSQELADSFAGVPL 313
R+VL E+AD+ +P+
Sbjct: 220 REVL----EMADTKVKIPM 234
>gi|333892161|ref|YP_004466036.1| rRNA methylase [Alteromonas sp. SN2]
gi|332992179|gb|AEF02234.1| rRNA methylase [Alteromonas sp. SN2]
Length = 271
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI-----DVNQKEADCRSWFPSIHRIL 211
V V+ M +LS ++ + I IA + +P+S V+ K ++ R +
Sbjct: 76 VNVTQKQMSQLSDTKTPQGI--IACVPLPSSTAGATNTLEQVSDKHSNQGLGHKDKQRYV 133
Query: 212 VLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYH 271
L +QDPGNLGT+LRT F + L P DPF+ K +R+S GA F +PI
Sbjct: 134 YLHEVQDPGNLGTILRTLAWFDNFSLLLSPNSVDPFNSKVVRSSMGAIFHVPI------E 187
Query: 272 LEVLKDEFQMKL 283
L+V D Q +
Sbjct: 188 LDVSLDALQTRF 199
>gi|182626152|ref|ZP_02953912.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str.
JGS1721]
gi|422874806|ref|ZP_16921291.1| RNA methyltransferase, TrmH family [Clostridium perfringens F262]
gi|177908589|gb|EDT71114.1| RNA methyltransferase, TrmH family [Clostridium perfringens D str.
JGS1721]
gi|380304447|gb|EIA16736.1| RNA methyltransferase, TrmH family [Clostridium perfringens F262]
Length = 257
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 40/56 (71%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
++++D +QDPGN+GT++RTA A G+ + G D +++K LR++ G+ F +PIV
Sbjct: 111 VVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIV 166
>gi|168188126|ref|ZP_02622761.1| rRNA methylase [Clostridium botulinum C str. Eklund]
gi|169294044|gb|EDS76177.1| rRNA methylase [Clostridium botulinum C str. Eklund]
Length = 261
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 94/203 (46%), Gaps = 33/203 (16%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVG----TTPIREIYNFNRSLQERTVRMDCL 137
I S N +K+ KLR+ YR LV G ++ + + L + + C
Sbjct: 4 IESKDNTLIKYVRKLRKKK-YRVQEEKFLVEGFRFVEEALKSTFKISHVLVGESAKEKCN 62
Query: 138 LLLDKVEVPEGLDNISTHTVRVSSV---VMKKLSGVQSSESIEAIALMKIPTSVFSIDVN 194
+ NI + ++S V ++K+L + + I AI KI I++
Sbjct: 63 SF--------NIFNIVSENTKISLVKDEILKELCETNNPQGIIAIVDNKI------INIE 108
Query: 195 QKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254
K S F ++ D +QDPGN+GT++R+A A GV + G D +++K LR+
Sbjct: 109 DK-----SGF-----YVLADKVQDPGNMGTIIRSANASGALGVIVTKGTVDIYNDKTLRS 158
Query: 255 SRGACFQLPIVSGSWYH-LEVLK 276
+ G+ F++PI+ + + + VLK
Sbjct: 159 TMGSIFKIPIIEDNEFEIINVLK 181
>gi|395536294|ref|XP_003770155.1| PREDICTED: RNA methyltransferase-like protein 1 [Sarcophilus
harrisii]
Length = 335
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 206 SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
S+ +L+ D ++DPGNLGT+LR+A V L GC D + K LRA GA FQ+PI+
Sbjct: 102 SLPLVLICDNLRDPGNLGTILRSAAGAGCCKVLLTKGCVDAWEPKVLRAGMGAHFQVPII 161
Query: 266 SG-SWYHL 272
S W H+
Sbjct: 162 SNLEWKHV 169
>gi|355753587|gb|EHH57552.1| RNA methyltransferase-like protein 1 [Macaca fascicularis]
Length = 420
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 36/56 (64%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
L+ D + DPGNLGT+LR+A V L GC DP+ K LRA GA FQ+PI++
Sbjct: 212 LICDNLLDPGNLGTILRSAAGAGCSKVLLTKGCVDPWEPKVLRAGMGAHFQVPIIN 267
>gi|295091183|emb|CBK77290.1| rRNA methylases [Clostridium cf. saccharolyticum K10]
Length = 278
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 26/251 (10%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
ITSTSN VK + + + R G +V G E+ + RT + L
Sbjct: 2 ITSTSNSQVKQVSAIAKRAKARRESGLFIVEGEKMFSEL---PKERLHRTYVTESFLRQQ 58
Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
E L TV + VMK ++ Q+ + I A+ + + I +KE D
Sbjct: 59 GEEADRLLAGCRYETV--TDEVMKAMADTQTPQGILALC-RQFSYELSDILGERKEGDEH 115
Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
+ + ++++L+ +QDPGNLGT+LR GV + D ++ K +R++ G+ ++
Sbjct: 116 TQEKAPAQLVILETLQDPGNLGTILRAGEGAGITGVIMNSTTADIYNPKVIRSTMGSVYR 175
Query: 262 LPIV--------------SGSWYHLEVLKDE--FQMKLLAGHAG---GNEEPRQVLQLSQ 302
+P V +G + LK E + + G G GN E + +
Sbjct: 176 VPFVYVEDLAGAVRRVKQAGVRLYAAHLKGEKNYDQQDYTGSTGFLIGN-EANGLSDETA 234
Query: 303 ELADSFAGVPL 313
ELAD++ +P+
Sbjct: 235 ELADAYIKIPM 245
>gi|18310871|ref|NP_562805.1| TrmH family RNA methyltransferase [Clostridium perfringens str. 13]
gi|168211665|ref|ZP_02637290.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str.
ATCC 3626]
gi|168214920|ref|ZP_02640545.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE
str. F4969]
gi|422346555|ref|ZP_16427469.1| hypothetical protein HMPREF9476_01542 [Clostridium perfringens
WAL-14572]
gi|18145553|dbj|BAB81595.1| probable rRNA methylase [Clostridium perfringens str. 13]
gi|170710362|gb|EDT22544.1| RNA methyltransferase, TrmH family [Clostridium perfringens B str.
ATCC 3626]
gi|170713658|gb|EDT25840.1| RNA methyltransferase, TrmH family [Clostridium perfringens CPE
str. F4969]
gi|373226100|gb|EHP48427.1| hypothetical protein HMPREF9476_01542 [Clostridium perfringens
WAL-14572]
Length = 257
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 40/56 (71%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
++++D +QDPGN+GT++RTA A G+ + G D +++K LR++ G+ F +PIV
Sbjct: 111 VVLVDKVQDPGNMGTIIRTAHAAGAAGIVMTKGTVDIYNDKTLRSTMGSIFYIPIV 166
>gi|410724142|ref|ZP_11363341.1| rRNA methylase [Clostridium sp. Maddingley MBC34-26]
gi|410602428|gb|EKQ56908.1| rRNA methylase [Clostridium sp. Maddingley MBC34-26]
Length = 261
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 30/189 (15%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
I S N K+ KL++ + R+ ++ G ++E + + V +D L++ +
Sbjct: 4 IESKENNLFKNTKKLKERKN-RNKSNKYIIEGFRLVQEAF-------KAKVHIDYLIITE 55
Query: 142 ----KVE--VPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
K+E + + + N R+S + K+L ++ + I A+ I++N
Sbjct: 56 DAKEKIEQYLLDYIVNDDIKIYRMSDNLFKELISTENPQGILAV-----------INMNN 104
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRAS 255
+ F L+ D +QDPGNLGT++RTA A G+ L G D ++EK +R++
Sbjct: 105 MKLKAYGDF-----YLLCDKLQDPGNLGTIIRTAHAAGVQGIILTKGTVDIYNEKTIRST 159
Query: 256 RGACFQLPI 264
G+ F +PI
Sbjct: 160 MGSIFYVPI 168
>gi|326693241|ref|ZP_08230246.1| rRNA methylase [Leuconostoc argentinum KCTC 3773]
Length = 257
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 18/124 (14%)
Query: 144 EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSW 203
+VP G+ +S V K ++G + + I A + +P F A W
Sbjct: 64 DVPHGVP-----AFEISEEVAKHIAGTNTPQGI--FAEISLPDKTFDPSYVHDGA----W 112
Query: 204 FPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
L+LD IQDPGN+GTL+RTA A + GV L G D +S K +RA +G+ F L
Sbjct: 113 -------LLLDKIQDPGNVGTLVRTADAAGFKGVVLGEGTADAYSPKVVRAMQGSQFHLE 165
Query: 264 IVSG 267
+++G
Sbjct: 166 VLNG 169
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,869,415,075
Number of Sequences: 23463169
Number of extensions: 190380307
Number of successful extensions: 441012
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3855
Number of HSP's successfully gapped in prelim test: 834
Number of HSP's that attempted gapping in prelim test: 436252
Number of HSP's gapped (non-prelim): 4886
length of query: 315
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 173
effective length of database: 9,027,425,369
effective search space: 1561744588837
effective search space used: 1561744588837
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)