BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041553
(315 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P74261|Y1673_SYNY3 Uncharacterized tRNA/rRNA methyltransferase slr1673
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr1673 PE=3 SV=1
Length = 274
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 23/188 (12%)
Query: 73 FALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTV 132
+ L + +ITST NP VK +L Q+ R G L+ GT + Q +
Sbjct: 2 YPLTSDIASITSTQNPLVKQLRQLHQTKG-RKQQGQLLLEGTHLLEVALA-----QGKGF 55
Query: 133 RMDCLLLLDKVEVPEGLDNI---STHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVF 189
C + + + P D + S H+ VS V+ K++ + + + A M
Sbjct: 56 NHGCFTAMWQEKNPVLADRLMAQSVHSYLVSGEVLAKMASTVNPDGVVATLTM------- 108
Query: 190 SIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
+ RS P LVL+ +QDPGNLGT+LRTA A G++L C DP S
Sbjct: 109 -------DQFWRSPPPHARLGLVLERLQDPGNLGTILRTAAATGVEGIWLTADCVDPTSP 161
Query: 250 KALRASRG 257
K LR+S G
Sbjct: 162 KVLRSSAG 169
>sp|P94538|YSGA_BACSU Uncharacterized tRNA/rRNA methyltransferase YsgA OS=Bacillus
subtilis (strain 168) GN=ysgA PE=3 SV=2
Length = 248
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 204 FPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
+ ++L++D +QDPGNLGT++RTA A V L G D F+ K LR+++G+ F +P
Sbjct: 100 LATARKVLLIDAVQDPGNLGTMIRTADAAGLDAVVLGDGTADAFNGKTLRSAQGSHFHIP 159
Query: 264 IV 265
+V
Sbjct: 160 VV 161
>sp|Q5ND52|RMTL1_MOUSE RNA methyltransferase-like protein 1 OS=Mus musculus GN=Rnmtl1 PE=2
SV=1
Length = 418
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
+L+ D ++DPGNLGT+LR+A V L GC D + K LRA GA FQ+PIV+
Sbjct: 211 VLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFQVPIVN 267
>sp|A4QNL8|RMTL1_XENTR RNA methyltransferase-like protein 1 OS=Xenopus tropicalis
GN=rnmtl1 PE=2 SV=1
Length = 415
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
L+ D I+DPGNLGT+LR A V L GC D + K LRA GA F+LP++S
Sbjct: 207 LICDNIRDPGNLGTILRCAAGAGCNKVLLTKGCVDAWEPKVLRAGMGAHFRLPVIS 262
>sp|A1L2E4|RML1B_DANRE RNA methyltransferase-like protein 1B OS=Danio rerio GN=rnmtl1b
PE=2 SV=2
Length = 445
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
L+ D ++DPGNLG++LR+A A V L GC D + K LRA+ GA F+LPI+
Sbjct: 233 LICDTVRDPGNLGSVLRSAAAAGCHSVLLTKGCVDIWELKVLRAAMGAHFRLPII 287
>sp|Q9HC36|RMTL1_HUMAN RNA methyltransferase-like protein 1 OS=Homo sapiens GN=RNMTL1 PE=1
SV=2
Length = 420
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 206 SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
S+ +L+ D ++DPGNLGT+LR+A V L GC D + K LRA GA F++PI+
Sbjct: 207 SLPLLLICDNLRDPGNLGTILRSAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRMPII 266
Query: 266 S 266
+
Sbjct: 267 N 267
>sp|Q6GPJ4|RMTL1_XENLA RNA methyltransferase-like protein 1 OS=Xenopus laevis GN=rnmtl1
PE=2 SV=1
Length = 419
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
L+ D I+DPGNLGT+LR A V L GC D + K LRA GA F+LPI++
Sbjct: 207 LICDNIRDPGNLGTILRCAAGAGCSKVLLTKGCVDAWEPKVLRAGMGAHFRLPIIT 262
>sp|Q9VW14|RMTL1_DROME RNA methyltransferase-like protein 1 homolog OS=Drosophila
melanogaster GN=CG14100 PE=2 SV=1
Length = 407
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
+V D I++P NLG+++RT A V + GCCDP+ KALR G F++PI
Sbjct: 238 VVCDNIREPNNLGSIIRTCAALPCSQVVVTHGCCDPWESKALRGGCGGQFRVPI 291
>sp|Q566V3|RML1A_DANRE RNA methyltransferase-like protein 1A OS=Danio rerio GN=rnmtl1a
PE=2 SV=1
Length = 435
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 206 SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
S+ L+ D ++D GNLGT+LR A A V L GC D + K LR++ GA F+LP+
Sbjct: 226 SVPLFLICDNVRDAGNLGTILRCAAAAGGDRVLLSKGCVDAWEPKVLRSAMGAHFRLPV 284
>sp|P18644|TSNR_STRAJ rRNA (adenosine-2'-O-)-methyltransferase OS=Streptomyces azureus
GN=tsnR PE=1 SV=1
Length = 269
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL-RASRGACFQLPIV-SG 267
++VLDG++ GN+G ++RT++A G+ L+ +++ L RASRG F LP+V SG
Sbjct: 118 VVVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVVLSG 177
Query: 268 SWYHLEVLKDEFQMKLLAGHAGGN 291
+ ++D M+L+ A G+
Sbjct: 178 REEAIAFIRDS-GMQLMTLKADGD 200
>sp|Q49V41|TRMHL_STAS1 Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP2224 PE=3 SV=1
Length = 249
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 25/179 (13%)
Query: 103 RHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSV 162
RH+ A+V G T N+ L + T++ K ++ E L +++ + V SV
Sbjct: 9 RHAVKEAIVSGHT-------INKILIQDTIK--------KGQINEILKLANSNKIIVQSV 53
Query: 163 VMKKLSGVQSSESIEAIALMKIPTSVFSID--VNQKEADCRSWFPSIHRILVLDGIQDPG 220
K+ G+ S + +A P D V Q++A + + +L+LDG++DP
Sbjct: 54 PKSKIDGLSDSPH-QGVAAYIAPYEYADFDAFVAQQKAQDK-----LSTVLILDGLEDPH 107
Query: 221 NLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI--VSGSWYHLEVLKD 277
NLG++LRTA A GV + ++ +AS GA +P+ V+ +E LKD
Sbjct: 108 NLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHIPVMRVTNLANTIETLKD 166
>sp|P59968|Y905_MYCBO Uncharacterized tRNA/rRNA methyltransferase Mb0905 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb0905 PE=3
SV=1
Length = 288
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 15/163 (9%)
Query: 144 EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSW 203
E+ + L + R S+ VM ++ G + + A A ++P V Q A R+
Sbjct: 78 ELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAA-RRVPEP----SVAQVVAGART- 131
Query: 204 FPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
+ VL+G+ D NLG++ R A V GC DP +A+R S G +P
Sbjct: 132 ------VAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVP 185
Query: 264 IVSGSWYHLEVL---KDEFQMKLLAGHAGGNEEPRQVLQLSQE 303
+ + E++ + F++ + H + P + +S E
Sbjct: 186 YARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHE 228
>sp|Q10543|Y881_MYCTU Uncharacterized tRNA/rRNA methyltransferase Rv0881/MT0904
OS=Mycobacterium tuberculosis GN=Rv0881 PE=3 SV=1
Length = 288
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 15/163 (9%)
Query: 144 EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSW 203
E+ + L + R S+ VM ++ G + + A A ++P V Q A R+
Sbjct: 78 ELKDDLAGVGAPYYRASADVMARVIGFHLNRGVLAAA-GRVPEP----SVAQVVAGART- 131
Query: 204 FPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLP 263
+ VL+G+ D NLG++ R A V GC DP +A+R S G +P
Sbjct: 132 ------VAVLEGVNDHENLGSIFRNAAGLSVDAVVFGTGCADPLYRRAVRVSMGHALLVP 185
Query: 264 IVSGSWYHLEVL---KDEFQMKLLAGHAGGNEEPRQVLQLSQE 303
+ + E++ + F++ + H + P + +S E
Sbjct: 186 YARAADWPTELMTLKESGFRLLAMTPHGNACKLPEAIAAVSHE 228
>sp|P52391|NHS_STRAS 23S rRNA methyltransferase OS=Streptomyces actuosus GN=nhs PE=1
SV=1
Length = 274
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 30/191 (15%)
Query: 82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTP----IREIYNFNRSLQERTVRMD-- 135
IT+ S+P V+ + + + S R S + L+ T P IR F +D
Sbjct: 7 ITNASDPAVQRIIDVTKHS--RASIKTTLIEDTEPLMECIRAGVQFIEVYGSSGTPLDPA 64
Query: 136 CLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQ 195
L L + E+P L ++S ++ +L + + IA ++P D+ +
Sbjct: 65 LLDLCRQREIPVRLIDVS---------IVNQLFKAERKAKVFGIA--RVPRPARLADIAE 113
Query: 196 KEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE-KALRA 254
+ D ++VLDG++ GN+G ++RT++A G+ L+ ++ + LRA
Sbjct: 114 RGGD----------VVVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRA 163
Query: 255 SRGACFQLPIV 265
SRG F LP+V
Sbjct: 164 SRGYVFSLPVV 174
>sp|A0LHE3|RSMG2_SYNFM Ribosomal RNA small subunit methyltransferase G 2
OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=rsmG2 PE=3 SV=1
Length = 498
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 81/196 (41%), Gaps = 30/196 (15%)
Query: 77 YHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDC 136
+ + I S +N + KL S R ALV G+ + E R DC
Sbjct: 239 HGFRKIESENNDLYRDIRKLLTSRGIRKQQ-RALVSGSKQVHETL--------RDFPDDC 289
Query: 137 LLLL---DKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESI-EAIALMKIPTSVFSID 192
L + ++ PEG +S Q + ++ E + + T + I
Sbjct: 290 LAWIAPGQEMPPPEGAPG--------------HMSWYQMAPALFETLDVFGTRTPLLLIK 335
Query: 193 VNQKEA-DCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKA 251
V + E D FP+ +LV QDP N+G ++R+A AF V LL PF KA
Sbjct: 336 VGEIETWDPVEGFPAGCSVLV--PFQDPENVGAVIRSAAAFGAVQVILLRESAHPFHPKA 393
Query: 252 LRASRGACFQLPIVSG 267
LRAS GA ++ + +G
Sbjct: 394 LRASGGAVLRMKLRNG 409
>sp|Q7A1Q9|TRMHL_STAAW Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MW2) GN=MW0487 PE=3 SV=1
Length = 248
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 19/163 (11%)
Query: 103 RHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSV 162
RH+ A++ G PI +I +QE + K ++ E L N + V +V
Sbjct: 9 RHAVREAIITGH-PINKIL-----IQEG---------IKKQQINEILKNAKDQKIIVQTV 53
Query: 163 VMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNL 222
KL + ++ + +A + P D K+ + ++ L+LDG++DP NL
Sbjct: 54 PKSKLDFLANAPH-QGVAALIAPYEYADFDQFLKQQKEKEGLSTV---LILDGLEDPHNL 109
Query: 223 GTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
G++LRTA A GV + ++ +AS GA +P++
Sbjct: 110 GSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVI 152
>sp|Q6GBV6|TRMHL_STAAS Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MSSA476) GN=SAS0489 PE=3 SV=1
Length = 248
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 19/163 (11%)
Query: 103 RHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSV 162
RH+ A++ G PI +I +QE + K ++ E L N + V +V
Sbjct: 9 RHAVREAIITGH-PINKIL-----IQEG---------IKKQQINEILKNAKDQKIIVQTV 53
Query: 163 VMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNL 222
KL + ++ + +A + P D K+ + ++ L+LDG++DP NL
Sbjct: 54 PKSKLDFLANAPH-QGVAALIAPYEYADFDQFLKQQKEKEGLSTV---LILDGLEDPHNL 109
Query: 223 GTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
G++LRTA A GV + ++ +AS GA +P++
Sbjct: 110 GSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVI 152
>sp|Q6GJD7|TRMHL_STAAR Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MRSA252) GN=SAR0535 PE=3 SV=1
Length = 248
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 19/163 (11%)
Query: 103 RHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSV 162
RH+ A++ G PI +I +QE + K ++ E L N + V +V
Sbjct: 9 RHAVREAIITGH-PINKIL-----IQEG---------IKKQQINEILKNAKDQKIIVQTV 53
Query: 163 VMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNL 222
KL + ++ + +A + P D K+ + ++ L+LDG++DP NL
Sbjct: 54 PKSKLDFLANAPH-QGVAALIAPYEYADFDQFLKQQKEKEGLSTV---LILDGLEDPHNL 109
Query: 223 GTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
G++LRTA A GV + ++ +AS GA +P++
Sbjct: 110 GSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVI 152
>sp|Q7A794|TRMHL_STAAN Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain N315) GN=SA0490 PE=1 SV=1
Length = 248
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 19/163 (11%)
Query: 103 RHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSV 162
RH+ A++ G PI +I +QE + K ++ E L N + V +V
Sbjct: 9 RHAVREAIITGH-PINKIL-----IQEG---------IKKQQINEILKNAKDQKIIVQTV 53
Query: 163 VMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNL 222
KL + ++ + +A + P D K+ + ++ L+LDG++DP NL
Sbjct: 54 PKSKLDFLANAPH-QGVAALIAPYEYADFDQFLKQQKEKEGLSTV---LILDGLEDPHNL 109
Query: 223 GTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
G++LRTA A GV + ++ +AS GA +P++
Sbjct: 110 GSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVI 152
>sp|Q99W72|TRMHL_STAAM Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=SAV0531 PE=1 SV=1
Length = 248
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 19/163 (11%)
Query: 103 RHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSV 162
RH+ A++ G PI +I +QE + K ++ E L N + V +V
Sbjct: 9 RHAVREAIITGH-PINKIL-----IQEG---------IKKQQINEILKNAKDQKIIVQTV 53
Query: 163 VMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNL 222
KL + ++ + +A + P D K+ + ++ L+LDG++DP NL
Sbjct: 54 PKSKLDFLANAPH-QGVAALIAPYEYADFDQFLKQQKEKEGLSTV---LILDGLEDPHNL 109
Query: 223 GTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
G++LRTA A GV + ++ +AS GA +P++
Sbjct: 110 GSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVI 152
>sp|Q9AGT0|TRMHL_STAAE Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain Newman) GN=NWMN_0494 PE=3 SV=1
Length = 248
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+L+LDG++DP NLG++LRTA A GV + ++ +AS GA +P++
Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVI 152
>sp|Q5HIE3|TRMHL_STAAC Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain COL) GN=SACOL0578 PE=3 SV=1
Length = 248
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+L+LDG++DP NLG++LRTA A GV + ++ +AS GA +P++
Sbjct: 97 VLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVTLTQTVAKASTGAIEHVPVI 152
>sp|P52393|TSNR_STRLU rRNA (adenosine-2'-O-)-methyltransferase OS=Streptomyces laurentii
GN=tsnR PE=3 SV=1
Length = 270
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL-RASRGACFQLPIVSGS 268
+++LDG++ GN+G ++RT A G+ L+ +++ L RASRG F LPIV +
Sbjct: 118 VVLLDGVKIVGNIGAIVRTRSALGAAGIVLVDSGLGTIADRRLIRASRGYVFSLPIVLAT 177
Query: 269 WYH-LEVLKD--------EFQMKLLAGHAGGNEEPRQVLQLSQEL---ADSFAGV 311
L +D E KL G G +E R VL E + FAGV
Sbjct: 178 RDEALAFFRDGGMRPVVFEADGKLSIGELDGIDE-RLVLVFGSEKTGPSGEFAGV 231
>sp|Q4L3J1|TRMHL_STAHJ Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH2477 PE=3 SV=1
Length = 249
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+++LDG++DP NLG++LRTA A GV + ++ +AS GA +P++
Sbjct: 97 VVILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHVPVM 152
>sp|Q8CTT9|TRMHL_STAES Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_0294 PE=3 SV=2
Length = 249
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+++LDG++DP NLG++LRTA A V + ++ +AS GA +P++
Sbjct: 97 VIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVI 152
>sp|Q5HRM1|TRMHL_STAEQ Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP0172 PE=3
SV=1
Length = 249
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
+++LDG++DP NLG++LRTA A V + ++ +AS GA +P++
Sbjct: 97 VIILDGLEDPHNLGSILRTADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVI 152
>sp|O30272|Y2399_ARCFU Uncharacterized tRNA/rRNA methyltransferase AF_2399
OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 /
DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2399 PE=3 SV=1
Length = 224
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
IL LD + D N+G +RTA F GV L E A++AS GA F +PI
Sbjct: 79 ILFLDNVVDQRNIGACIRTAEFFGAAGVVLPKRRVGSIQEGAVKASAGAVFHIPI 133
>sp|P47494|Y252_MYCGE Uncharacterized tRNA/rRNA methyltransferase MG252 OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=MG252 PE=3 SV=1
Length = 242
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 28/128 (21%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS--- 266
+++LD IQDP N G +LRT +A + G+ P + ++ S G+ F +V
Sbjct: 97 LVMLDEIQDPYNFGAILRTCLASEVDGIIFKKNNQVPINNTVMKTSMGSVFYQNLVQVAN 156
Query: 267 -----------GSWYHLEVL----------KDEFQMKLLAGHAGGNEEPRQVLQLSQELA 305
G W + L K +F K+L GNE+ R V QL + A
Sbjct: 157 LSYTITKLKEIGFWTVVSTLDPIWKPIDYRKVDFAKKIL---IVGNED-RGVNQLITKNA 212
Query: 306 DSFAGVPL 313
D +P+
Sbjct: 213 DCRIKIPM 220
>sp|Q87D65|RLMB_XYLFT 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Xylella
fastidiosa (strain Temecula1 / ATCC 700964) GN=rlmB PE=3
SV=1
Length = 249
Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
+LVLDG+QDP NLG LR+A A V + + + S GA +LP+++
Sbjct: 101 LLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIA 157
>sp|Q9F5K6|AVRB_STRVR 23S rRNA (uridine(2479)-2'-O)-methyltransferase OS=Streptomyces
viridochromogenes GN=aviRb PE=1 SV=1
Length = 287
Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 19/188 (10%)
Query: 80 KNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLL 139
+ ITS + F + L + + R G LV+G PI RT+ D
Sbjct: 13 RRITSRNARF-QQWQALLGNRNKRTRAGEFLVMGVRPIS--LAVEHGWPVRTLLYDGQRE 69
Query: 140 LDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEAD 199
L K E L + T + ++ ++ +L G ++ E +A++++P AD
Sbjct: 70 LSKW-ARELLRTVRTEQIAMAPDLLMEL-GEKNEAPPEVVAVVEMP------------AD 115
Query: 200 CRSWFPSIHRIL--VLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRG 257
P L + D PGN+G+++R+A A G+ + D + K++R+S G
Sbjct: 116 DLDRIPVREDFLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAGHAADVYDPKSVRSSTG 175
Query: 258 ACFQLPIV 265
+ F LP V
Sbjct: 176 SLFSLPAV 183
>sp|Q9PC00|RLMB_XYLFA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Xylella
fastidiosa (strain 9a5c) GN=rlmB PE=3 SV=1
Length = 249
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVS 266
+LVLDG+QDP NLG LR+A A V + + + S GA +LP+++
Sbjct: 101 LLVLDGVQDPHNLGACLRSAAAAGVTAVIIPKDKSVGINATVRKTSSGAADRLPVIA 157
>sp|P75424|Y355_MYCPN Uncharacterized tRNA/rRNA methyltransferase MG252 homolog
OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129)
GN=MPN_355 PE=3 SV=1
Length = 242
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACF 260
+++L IQDP N G +LRT MA + G+ P + +R S G F
Sbjct: 97 LVMLHEIQDPHNFGAILRTCMAAEVDGIIFKKHNQAPINSTVIRTSMGTVF 147
>sp|B1MGY6|Y572_MYCA9 Uncharacterized tRNA/rRNA methyltransferase MAB_0572
OS=Mycobacterium abscessus (strain ATCC 19977 / DSM
44196) GN=MAB_0572 PE=3 SV=1
Length = 315
Score = 38.9 bits (89), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSW 269
++ LD I DP NLG ++R+ AF GV + + A R S GA +LP+ +
Sbjct: 169 LVALDNISDPRNLGAIVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATN 228
Query: 270 YHLEVLKD--EFQMKLLAGHAGGNEE 293
LKD + + ++ AGG+ E
Sbjct: 229 L-TRTLKDWQDKGITIVGLDAGGDTE 253
>sp|A0PV26|Y4155_MYCUA Uncharacterized tRNA/rRNA methyltransferase MUL_4155
OS=Mycobacterium ulcerans (strain Agy99) GN=MUL_4155
PE=3 SV=1
Length = 310
Score = 38.9 bits (89), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSW 269
++ LD I DP NLG ++R+ AF GV + + A R S GA ++P+ +
Sbjct: 163 LVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATN 222
Query: 270 YHLEVLKD--EFQMKLLAGHAGGN 291
LKD + ++++ AGG+
Sbjct: 223 L-TRALKDWADRGVRVVGLDAGGD 245
>sp|B2HJ20|Y5079_MYCMM Uncharacterized tRNA/rRNA methyltransferase MMAR_5079
OS=Mycobacterium marinum (strain ATCC BAA-535 / M)
GN=MMAR_5079 PE=3 SV=1
Length = 310
Score = 38.9 bits (89), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSW 269
++ LD I DP NLG ++R+ AF GV + + A R S GA ++P+ +
Sbjct: 163 LVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATN 222
Query: 270 YHLEVLKD--EFQMKLLAGHAGGN 291
LKD + ++++ AGG+
Sbjct: 223 L-TRALKDWADRGVRVVGLDAGGD 245
>sp|Q80ZJ6|ZER1_MOUSE Protein zer-1 homolog OS=Mus musculus GN=Zer1 PE=1 SV=1
Length = 779
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Query: 117 IREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESI 176
I+ + N S QE TV+ +C L L +PE L+ RV+ +++ LS + ESI
Sbjct: 452 IQVVLNGMESYQEVTVQRNCCLTLCNFSIPEELE---FQYRRVNELLLGILSPTRQDESI 508
Query: 177 EAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGG 236
+ IA+ V +D + KEA + F L+ + D M F W
Sbjct: 509 QRIAVHLCNALVCQVDNDHKEAVGKMGFVVTMLKLIQKKLLDKT-----CDQVMEFSWSA 563
Query: 237 VFLL----PGCCDPF 247
++ + P C+ F
Sbjct: 564 LWNITDETPDNCEMF 578
>sp|Q76NT0|MRM1_DICDI Mitochondrial rRNA methyltransferase OS=Dictyostelium discoideum
GN=mrm1 PE=3 SV=1
Length = 531
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
LVLD + DP N+G ++R F GV + P + A ++S GAC
Sbjct: 376 LVLDELWDPQNVGAIIRNCSFFNIDGVVISNKNSSPITPAASKSSSGAC 424
>sp|Q5RAG3|ZER1_PONAB Protein zer-1 homolog OS=Pongo abelii GN=ZER1 PE=2 SV=1
Length = 766
Score = 38.5 bits (88), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 14/153 (9%)
Query: 99 SSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVR 158
+S YR L I+ + N S QE TV+ +C L L +PE L+ R
Sbjct: 423 NSEYRSEQSVKL--RRQVIQVVLNGMESYQEVTVQRNCCLTLCNFGIPEELE---FQYRR 477
Query: 159 VSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQD 218
V+ +++ L+ + ESI+ IA+ V +D + KEA + F + +L IQ
Sbjct: 478 VNELLLSILNPTRQDESIQRIAVHLCNALVCQVDNDHKEAVGKMGFV----VTMLKLIQK 533
Query: 219 PGNLGTLLRTAMAFKWGGVFLL----PGCCDPF 247
L + M F W ++ + P C+ F
Sbjct: 534 KL-LDKICDQVMEFSWSALWNITDETPDNCEMF 565
>sp|Q743W2|Y479_MYCPA Uncharacterized tRNA/rRNA methyltransferase MAP_0479
OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 /
K-10) GN=MAP_0479 PE=3 SV=1
Length = 309
Score = 38.5 bits (88), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 177 EAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGG 236
+ IAL ++P +++ + EA S P++ ++ LD I DP NLG ++R+ AF G
Sbjct: 133 QGIAL-QVPPYIYAHPDDLLEAAAGS-LPAL--LVALDNISDPRNLGAIVRSVAAFGGHG 188
Query: 237 VFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKD--EFQMKLLAGHAGGN 291
V + + A R S GA ++P+ + L+D + ++++ AGG+
Sbjct: 189 VLIPQRRSASVTAVAWRTSAGAAARIPVARATNL-TRTLQDWADRGLRVIGLDAGGD 244
>sp|A1UMF4|Y4822_MYCSK Uncharacterized tRNA/rRNA methyltransferase Mkms_4822
OS=Mycobacterium sp. (strain KMS) GN=Mkms_4822 PE=3 SV=1
Length = 314
Score = 38.1 bits (87), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
++ LD I DP NLG ++R+ AF GV + + A R S GA +LP+
Sbjct: 167 LVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVA 222
>sp|Q1B2P4|Y4736_MYCSS Uncharacterized tRNA/rRNA methyltransferase Mmcs_4736
OS=Mycobacterium sp. (strain MCS) GN=Mmcs_4736 PE=3 SV=1
Length = 314
Score = 38.1 bits (87), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
++ LD I DP NLG ++R+ AF GV + + A R S GA +LP+
Sbjct: 167 LVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVA 222
>sp|A3Q6V9|Y5122_MYCSJ Uncharacterized tRNA/rRNA methyltransferase Mjls_5122
OS=Mycobacterium sp. (strain JLS) GN=Mjls_5122 PE=3 SV=1
Length = 314
Score = 38.1 bits (87), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV 265
++ LD I DP NLG ++R+ AF GV + + A R S GA +LP+
Sbjct: 167 LVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVA 222
>sp|P74328|Y955_SYNY3 Uncharacterized tRNA/rRNA methyltransferase slr0955
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr0955 PE=3 SV=1
Length = 384
Score = 38.1 bits (87), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI--VSG 267
++++D I DP NLG ++RTA AF G+ L + ++ + GA P+ V
Sbjct: 219 LIIIDSITDPHNLGAIIRTAEAFGAQGMVLPQRRVAGITSTVMKVAAGALEHFPVARVVN 278
Query: 268 SWYHLEVLKD 277
LE LK+
Sbjct: 279 LSRALETLKE 288
>sp|Q9CCW4|Y324_MYCLE Uncharacterized tRNA/rRNA methyltransferase ML0324 OS=Mycobacterium
leprae (strain TN) GN=ML0324 PE=3 SV=2
Length = 309
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
++ LD I DP NLG ++R+ AF G+ + + A R S GA ++P+
Sbjct: 162 LVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPV 216
>sp|B8ZUB0|Y324_MYCLB Uncharacterized tRNA/rRNA methyltransferase MLBr00324
OS=Mycobacterium leprae (strain Br4923) GN=MLBr00324
PE=3 SV=2
Length = 309
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
++ LD I DP NLG ++R+ AF G+ + + A R S GA ++P+
Sbjct: 162 LVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPV 216
>sp|Q7Z7L7|ZER1_HUMAN Protein zer-1 homolog OS=Homo sapiens GN=ZER1 PE=1 SV=1
Length = 766
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 14/153 (9%)
Query: 99 SSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVR 158
+S YR L I+ + N S QE TV+ +C L L +PE L+ R
Sbjct: 423 NSEYRSEQSVKL--RRQVIQVVLNGMESYQEVTVQRNCCLTLCNFSIPEELE---FQYRR 477
Query: 159 VSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQD 218
V+ +++ L+ + ESI+ IA+ V +D + KEA + F + +L IQ
Sbjct: 478 VNELLLSILNPTRQDESIQRIAVHLCNALVCQVDNDHKEAVGKMGFV----VTMLKLIQK 533
Query: 219 PGNLGTLLRTAMAFKWGGVFLL----PGCCDPF 247
L M F W ++ + P C+ F
Sbjct: 534 KL-LDKTCDQVMEFSWSALWNITDETPDNCEMF 565
>sp|Q06753|YACO_BACSU Putative TrmH family tRNA/rRNA methyltransferase YacO OS=Bacillus
subtilis (strain 168) GN=yacO PE=3 SV=2
Length = 249
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPI 264
L+LD ++DP NLG+++RTA A G+ + + +AS GA +P+
Sbjct: 100 LILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPV 153
>sp|A0QAB6|Y574_MYCA1 Uncharacterized tRNA/rRNA methyltransferase MAV_0574
OS=Mycobacterium avium (strain 104) GN=MAV_0574 PE=3
SV=1
Length = 309
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSW 269
++ LD I DP NLG ++R+ AF GV + + A R S GA ++P+ +
Sbjct: 162 LVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATN 221
Query: 270 YHLEVLKD--EFQMKLLAGHAGGN 291
L+D + ++++ AGG+
Sbjct: 222 L-TRTLQDWADRGLRVIGLDAGGD 244
>sp|Q9KNY2|RLMB_VIBCH 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=rlmB PE=3 SV=1
Length = 247
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 18/122 (14%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIV---- 265
+LVLDG+ DP NLG LR A A V + P + + + GA +P+V
Sbjct: 98 LLVLDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTN 157
Query: 266 ----------SGSWY---HLEVLKDEFQMKLLAGHA-GGNEEPRQVLQLSQELADSFAGV 311
G W+ E D +Q KL A E + +L++E D +
Sbjct: 158 LARTMRALQEKGVWFVGTAGEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKI 217
Query: 312 PL 313
P+
Sbjct: 218 PM 219
>sp|O51468|Y516_BORBU Uncharacterized tRNA/rRNA methyltransferase BB_0516 OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=BB_0516 PE=3 SV=1
Length = 228
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 24/50 (48%)
Query: 210 ILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGAC 259
IL+LD I+DP N G +LRTA F V + LR S GA
Sbjct: 80 ILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGAS 129
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,410,149
Number of Sequences: 539616
Number of extensions: 4490446
Number of successful extensions: 10370
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 10311
Number of HSP's gapped (non-prelim): 92
length of query: 315
length of database: 191,569,459
effective HSP length: 117
effective length of query: 198
effective length of database: 128,434,387
effective search space: 25430008626
effective search space used: 25430008626
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)