Query 041553
Match_columns 315
No_of_seqs 222 out of 1674
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 14:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nk6_A 23S rRNA methyltransfer 100.0 1.9E-46 6.5E-51 351.5 19.4 215 79-314 7-244 (277)
2 1ipa_A RRMH, RNA 2'-O-ribose m 100.0 3.9E-46 1.3E-50 348.9 20.9 213 81-314 2-238 (274)
3 1x7o_A Avirb, rRNA methyltrans 100.0 2.7E-45 9.2E-50 345.3 20.3 221 74-314 7-255 (287)
4 2i6d_A RNA methyltransferase, 100.0 2.2E-44 7.5E-49 334.1 15.5 206 83-314 3-229 (257)
5 1gz0_A Hypothetical tRNA/RRNA 100.0 4.2E-40 1.4E-44 304.7 17.4 197 103-314 7-229 (253)
6 3e5y_A TRMH family RNA methylt 99.9 1.1E-27 3.8E-32 207.2 7.2 108 207-314 4-131 (160)
7 3n4j_A RNA methyltransferase; 99.9 5.5E-27 1.9E-31 203.8 8.7 107 208-314 4-133 (165)
8 2ha8_A TAR (HIV-1) RNA loop bi 99.9 8.7E-26 3E-30 199.4 9.6 107 206-314 24-152 (184)
9 3l8u_A SMU.1707C, putative rRN 99.9 9.9E-26 3.4E-30 199.0 9.8 106 206-314 15-141 (182)
10 1v2x_A TRNA (GM18) methyltrans 99.9 1.2E-25 4E-30 200.1 8.5 107 206-314 20-145 (194)
11 1zjr_A TRNA (guanosine-2'-O-)- 99.9 6.8E-25 2.3E-29 197.7 9.2 107 207-314 24-149 (211)
12 3kty_A Probable methyltransfer 99.9 1.7E-23 5.9E-28 182.7 7.2 104 207-314 9-149 (173)
13 3ilk_A Uncharacterized tRNA/RR 99.8 2.3E-21 7.8E-26 178.4 6.6 101 208-314 7-137 (244)
14 3onp_A TRNA/RRNA methyltransfe 99.8 6.4E-21 2.2E-25 175.9 7.7 103 208-314 4-139 (249)
15 3ic6_A Putative methylase fami 99.8 1.4E-20 4.7E-25 170.9 6.5 105 208-314 17-171 (223)
16 3dcm_X AdoMet, uncharacterized 97.5 0.00028 9.7E-09 62.3 7.9 92 220-313 29-163 (192)
17 2yy8_A ATRM56, UPF0106 protein 81.3 1.7 6E-05 37.9 4.8 21 290-312 108-128 (201)
18 2o3a_A UPF0106 protein AF_0751 80.5 2.2 7.6E-05 36.6 5.1 76 225-312 24-125 (178)
19 1w41_A 50S ribosomal protein L 34.2 88 0.003 23.5 5.9 64 109-182 16-87 (101)
20 3cpq_A 50S ribosomal protein L 34.1 1.1E+02 0.0036 23.6 6.5 64 109-182 21-92 (110)
21 3v7e_A Ribosome-associated pro 33.6 1.2E+02 0.004 22.1 6.3 57 109-173 11-74 (82)
22 3on1_A BH2414 protein; structu 32.4 1.2E+02 0.0042 22.8 6.5 54 110-171 19-79 (101)
23 3o63_A Probable thiamine-phosp 30.8 2E+02 0.0069 25.2 8.6 81 228-313 107-194 (243)
24 3v7q_A Probable ribosomal prot 29.1 1.6E+02 0.0054 22.2 6.6 70 87-171 4-80 (101)
25 2aif_A Ribosomal protein L7A; 28.5 1.6E+02 0.0056 23.5 7.0 64 110-183 42-113 (135)
26 4a18_G RPL30; ribosome, eukary 23.7 1.2E+02 0.0043 22.9 5.1 63 110-182 23-93 (104)
27 3iz5_f 60S ribosomal protein L 23.3 82 0.0028 24.6 4.1 64 109-182 26-97 (112)
28 3u5e_c L32, RP73, YL38, 60S ri 22.6 1.5E+02 0.005 22.6 5.3 63 110-182 23-93 (105)
29 1vq8_F 50S ribosomal protein L 21.3 2.9E+02 0.0098 21.3 7.0 62 110-181 30-99 (120)
30 2fc3_A 50S ribosomal protein L 21.0 2.9E+02 0.01 21.4 7.0 64 109-182 28-99 (124)
31 2lbw_A H/ACA ribonucleoprotein 20.4 2.4E+02 0.0083 21.9 6.4 58 110-175 21-86 (121)
32 2qip_A Protein of unknown func 20.2 1.1E+02 0.0039 24.8 4.5 40 269-313 121-161 (165)
No 1
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A*
Probab=100.00 E-value=1.9e-46 Score=351.50 Aligned_cols=215 Identities=20% Similarity=0.278 Sum_probs=178.4
Q ss_pred eeeecCCCCHHHHHHHhhhccccccccCCcEEEEehHHHHHHHhcCCcccccceeeeEEEeccCcCc-cccc---cccCC
Q 041553 79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEV-PEGL---DNIST 154 (315)
Q Consensus 79 ~~~ItS~~N~~vK~~~kL~~~~k~R~~~g~~lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~l-~~~l---~~~~~ 154 (315)
|+.|||.+||++|++++|+ +|+|+++|.|+|||.|+|+|||+++. .++.||++++... .+++ ...++
T Consensus 7 ~~~I~S~~n~~iK~~~~L~--~k~R~~~g~flveG~~~V~eaL~~~~-------~i~~l~~~~~~~~~~~l~~~~~~~~~ 77 (277)
T 3nk6_A 7 PAIITNASDPAVQRIIDVT--KHSRASIKTTLIEDTEPLMECIRAGV-------QFIEVYGSSGTPLDPALLDLCRQREI 77 (277)
T ss_dssp CCTTSBCSSCSHHHHHHHH--HTC----CEEEEESHHHHHHHHHTTC-------CEEEEEEETTSCCCHHHHHHHHHTTC
T ss_pred ceeecCCCChHHHHHHHHh--hhhHhhcCCEEEEeHHHHHHHHhCCC-------CeEEEEEeCCccCcHHHHHHHHhcCC
Confidence 6789999999999999998 58999999999999999999999864 5888999886421 2222 34578
Q ss_pred ceEEeCHHHHHhhcCCCCCcceeEEEEEecCCCCCccchhhhhcccccCCCCCcEEEEEecCCCcCcHHHHHHHHhHhcC
Q 041553 155 HTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKW 234 (315)
Q Consensus 155 ~v~~vs~~~l~kLs~~~~~qGi~avAv~~~p~~~~~l~~~~~~~~~~~~~~~~~~~lvLD~I~DP~NlGaIiRsA~A~Gv 234 (315)
+++.++++.|++++++.+|||+ +|++..|.. .+++++... ..+ +|+||+|+||+|+|||+|||+|||+
T Consensus 78 ~v~~v~~~~l~~ls~~~~~qGv--~a~~~~~~~-~~l~~~~~~--------~~~-~lvLd~v~dP~NlGaI~Rta~a~G~ 145 (277)
T 3nk6_A 78 PVRLIDVSIVNQLFKAERKAKV--FGIARVPRP-ARLADIAER--------GGD-VVVLDGVKIVGNIGAIVRTSLALGA 145 (277)
T ss_dssp CEEEECHHHHTTCC-----CCE--EEEEECCCC-CCHHHHHHH--------CSC-EEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred cEEEECHHHHHHhhCCCCCCeE--EEEEecCCC-CCHHHHhcc--------CCC-EEEEEcCCCcchHHHHHHHHHHcCC
Confidence 9999999999999999999998 577766633 255554321 235 9999999999999999999999999
Q ss_pred CeEEECC-CCCCCCChhHHHhhcccceeccEEEccHHHHHHHHhhCCcEEEEEecC------------------CCCCCC
Q 041553 235 GGVFLLP-GCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAG------------------GNEEPR 295 (315)
Q Consensus 235 ~~Vil~~-~~~d~~~~kv~RaS~Ga~~~lpi~~~~~~~l~~~~~~~g~~ivat~~~------------------~G~E~~ 295 (315)
++|++++ +++|+|+++++|+||||+|++|+++.++.++++.+++.|++++|++.. ||||+.
T Consensus 146 ~~vil~~~~~~~~~~~~v~ras~Ga~~~l~i~~~~l~~~l~~lk~~g~~v~~~~~~~~~~~~~~~~~~~~~alv~GnE~~ 225 (277)
T 3nk6_A 146 AGIVLVDSDLATIADRRLLRASRGYVFSLPVVLADREEAVSFLRDNDIALMVLDTDGDLGVKDLGDRADRMALVFGSEKG 225 (277)
T ss_dssp SEEEEESCCCSCTTCHHHHHHTTTCTTTSCEEECCHHHHHHHHHHTTCCEEEECTTCSEEGGGGGGCCSCCEEEEEBTTT
T ss_pred CEEEEcCCCCcCCCCHHHHHHhCChhhcCeEEEECHHHHHHHHHhcCCeEEEEecCCCcchhhhhccCCCEEEEECCCCC
Confidence 9999999 899999999999999999999999888888888889999999998653 999999
Q ss_pred CCCHHHHHhcCcEEEccCC
Q 041553 296 QVLQLSQELADSFAGVPLC 314 (315)
Q Consensus 296 Gls~~~~~~cD~~v~IPm~ 314 (315)
||++++++.||..|+|||.
T Consensus 226 Gls~~~~~~~d~~v~IPm~ 244 (277)
T 3nk6_A 226 GPSGLFQEASAGTVSIPML 244 (277)
T ss_dssp BSCHHHHHHCSCEEECCCS
T ss_pred CCCHHHHHhCCeEEEECCC
Confidence 9999999999999999994
No 2
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=3.9e-46 Score=348.90 Aligned_cols=213 Identities=25% Similarity=0.313 Sum_probs=183.1
Q ss_pred eecCCCCHHHHHHHhhhccccccccCCcEEEEehHHHHHHHhcCCcccccceeeeEEEeccCcC---cccccc---ccC-
Q 041553 81 NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE---VPEGLD---NIS- 153 (315)
Q Consensus 81 ~ItS~~N~~vK~~~kL~~~~k~R~~~g~~lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~---l~~~l~---~~~- 153 (315)
.|||.+||++|++++|++ +|+|++++.|+|||.|+|+|||+++. .++.+|++++.. +.+++. ..+
T Consensus 2 ~ItS~~n~~ik~~~~L~~-kk~R~~~g~f~veG~~~v~eal~~~~-------~i~~l~~~~~~~~~~~~~l~~~~~~~~~ 73 (274)
T 1ipa_A 2 RITSTANPRIKELARLLE-RKHRDSQRRFLIEGAREIERALQAGI-------ELEQALVWEGGLNPEEQQVYAALGRVGR 73 (274)
T ss_dssp EECCTTSHHHHHHHGGGS-HHHHHHHTEEEEESHHHHHHHHHTTC-------CEEEEEEETTCCCHHHHHHHHCC-----
T ss_pred ccCCCCCHHHHHHHHHhc-cccccccCeEEEEeHHHHHHHHhCCC-------CeEEEEEEcCcccchHHHHHHHHHhcCC
Confidence 699999999999999987 68999999999999999999998753 588999987642 123332 235
Q ss_pred CceEEeCHHHHHhhcCCCCCcceeEEEEEecCCCCCccchhhhhcccccCCCCCcEEEEEecCCCcCcHHHHHHHHhHhc
Q 041553 154 THTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFK 233 (315)
Q Consensus 154 ~~v~~vs~~~l~kLs~~~~~qGi~avAv~~~p~~~~~l~~~~~~~~~~~~~~~~~~~lvLD~I~DP~NlGaIiRsA~A~G 233 (315)
++++.++++.|++++++.+|||+ +|++..|. .+++++. ....+++|+||+|+||+|+|||+|||+|||
T Consensus 74 ~~v~~v~~~~l~~ls~~~~~qGv--~a~~~~~~--~~l~~~~--------~~~~~~~lvLd~i~dp~NlGaI~Rta~a~G 141 (274)
T 1ipa_A 74 LALLEVSEAVLKKLSVRDNPAGL--IALARMPE--RTLEEYR--------PSPDALILVAVGLEKPGNLGAVLRSADAAG 141 (274)
T ss_dssp CEEEEECHHHHHHHCCSSSCCSE--EEEEECCC--CCCCCCC--------CCTTCEEEEEESCCCHHHHHHHHHHHHHHT
T ss_pred ccEEEeCHHHHHHHhCCCCCCeE--EEEEeCCC--CCHHHHh--------ccCCCeEEEEeCCCCcchHHHHHHHHHhhc
Confidence 78999999999999999999998 56666654 2343321 123468999999999999999999999999
Q ss_pred CCeEEECCCCCCCCChhHHHhhcccceeccEEEccHHHHHHHHhhCCcEEEEEecC-----------------CCCCCCC
Q 041553 234 WGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAG-----------------GNEEPRQ 296 (315)
Q Consensus 234 v~~Vil~~~~~d~~~~kv~RaS~Ga~~~lpi~~~~~~~l~~~~~~~g~~ivat~~~-----------------~G~E~~G 296 (315)
+++|+++++ +|+|+++++|+|||++|++|+++.++.++++.+++.|++++|++.. ||||+.|
T Consensus 142 ~~~vil~~~-~~~~~~~v~ras~Ga~~~l~~~~~~l~~~l~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~alv~G~E~~G 220 (274)
T 1ipa_A 142 AEAVLVAGG-VDLYSPQVIRNSTGVVFSLRTLAASESEVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEG 220 (274)
T ss_dssp CSEEEEESC-CCTTCHHHHHHTTTGGGTSCEEEECHHHHHHHHHHTTCCEEEECTTCSSBGGGSCCCSSEEEEECCTTSC
T ss_pred cCEEEEeCC-cCcCCHHHHHHcCChhhcceeEeCCHHHHHHHHHHcCCEEEEEeCCCCcchhhcCCCCCEEEEECCCCcC
Confidence 999999999 9999999999999999999999866888888889999999999864 9999999
Q ss_pred CCHHHHHhcCcEEEccCC
Q 041553 297 VLQLSQELADSFAGVPLC 314 (315)
Q Consensus 297 ls~~~~~~cD~~v~IPm~ 314 (315)
|++++++.||..|+|||.
T Consensus 221 ls~~~~~~~d~~v~IPm~ 238 (274)
T 1ipa_A 221 LRAAWLEAAQTQVRIPMQ 238 (274)
T ss_dssp CCHHHHHHCSEEEBCCCC
T ss_pred CCHHHHHhCCeEEEECCC
Confidence 999999999999999994
No 3
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A*
Probab=100.00 E-value=2.7e-45 Score=345.25 Aligned_cols=221 Identities=21% Similarity=0.268 Sum_probs=181.5
Q ss_pred cCCcceeeecCCCCHHHHHHHhhhccccccccCCcEEEEehHHHHHHHhcCCcccccceeeeEEEeccCcC----ccccc
Q 041553 74 ALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE----VPEGL 149 (315)
Q Consensus 74 ~~~~~~~~ItS~~N~~vK~~~kL~~~~k~R~~~g~~lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~----l~~~l 149 (315)
.+|-.=+.||| +||++|++++|++++|+|+++|.|+|||.|+|+|||+++. .++.||++++.. +.+++
T Consensus 7 ~~~~~~~~ItS-~n~~ik~~~~L~~~~k~R~~~g~f~veG~~~V~eal~~~~-------~i~~l~~~~~~~~~~~~~~l~ 78 (287)
T 1x7o_A 7 ERTPAARRITS-RNARFQQWQALLGNRNKRTRAGEFLVMGVRPISLAVEHGW-------PVRTLLYDGQRELSKWARELL 78 (287)
T ss_dssp ------------CCHHHHHHHHTTSCHHHHHHHTEEEEESHHHHHHHHHTTC-------CEEEEEEESSCCCCHHHHHHH
T ss_pred CCCCCCcCCCC-CCHHHHHHHHHhhchhhHhhcCcEEEEeHHHHHHHHhCCC-------CeEEEEEecCcccchhHHHHH
Confidence 34433336999 9999999999987328999999999999999999998763 588999987642 23344
Q ss_pred cccCCceEEeCHHHHHhhcCCC-CCcceeEEEEEecCCCCCccchhhhhcccccCCCCCcEEEEEecCCCcCcHHHHHHH
Q 041553 150 DNISTHTVRVSSVVMKKLSGVQ-SSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRT 228 (315)
Q Consensus 150 ~~~~~~v~~vs~~~l~kLs~~~-~~qGi~avAv~~~p~~~~~l~~~~~~~~~~~~~~~~~~~lvLD~I~DP~NlGaIiRs 228 (315)
...+++++.++++.|++|+++. +|||+ +|++..|. .+++++. ....+++|+||+|+||||+|+|+||
T Consensus 79 ~~~~~~v~~v~~~~l~~ls~~~~~~qGv--~a~~~~~~--~~l~~~~--------~~~~~l~lvLd~i~dP~NlGaIiRt 146 (287)
T 1x7o_A 79 RTVRTEQIAMAPDLLMELGEKNEAPPEV--VAVVEMPA--DDLDRIP--------VREDFLGVLFDRPTSPGNIGSIIRS 146 (287)
T ss_dssp HHSCSEEEEECHHHHTTSSCSSSCCCSE--EEEEECCC--CCGGGSC--------CCTTCEEEEEESCSCHHHHHHHHHH
T ss_pred HHcCCcEEEeCHHHHHHHhCCCCCCCcE--EEEEecCC--CCHHHHh--------cccCCEEEEEeCCCCcchHHHHHHH
Confidence 4445789999999999999999 99998 56776654 2444331 0125689999999999999999999
Q ss_pred HhHhcCCeEEECCCCCCCCChhHHHhhcccceeccEEEc-cHHHHHHHH---hhCCcE--EEEEecC-------------
Q 041553 229 AMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG-SWYHLEVLK---DEFQMK--LLAGHAG------------- 289 (315)
Q Consensus 229 A~A~Gv~~Vil~~~~~d~~~~kv~RaS~Ga~~~lpi~~~-~~~~l~~~~---~~~g~~--ivat~~~------------- 289 (315)
|+|||+++|++.++++|+|+++++|+|||++|++|+++. ++.++++.+ ++.|++ ++|++..
T Consensus 147 a~a~G~~~vil~~~~~d~~~~kv~ras~Ga~~~l~i~~~~~l~~~l~~l~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~ 226 (287)
T 1x7o_A 147 ADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVMDWVEARRAAGTPIVLVGTDEHGDCDVFDFDFTQP 226 (287)
T ss_dssp HHHTTCCEEEEESSSSCTTSHHHHHHTTTGGGTSCEEEESSHHHHHHHHHHHHHHTCCCEEEEECTTCSEEGGGSCTTSC
T ss_pred hHhcccCEEEEECCCcCccCHHHHhhhcCcceeeeEEEeCCHHHHHHHHHHHHhcCCceEEEEEECCCCccHhhcCCCCC
Confidence 999999999999999999999999999999999999985 688888888 888999 9998864
Q ss_pred ----CCCCCCCCCHHHHHhcCcEEEccCC
Q 041553 290 ----GNEEPRQVLQLSQELADSFAGVPLC 314 (315)
Q Consensus 290 ----~G~E~~Gls~~~~~~cD~~v~IPm~ 314 (315)
||||+.||++++++.||..|+|||.
T Consensus 227 ~alV~GnE~~Gls~~~~~~~d~~v~IPm~ 255 (287)
T 1x7o_A 227 TLLLIGNETAGLSNAWRTLCDYTVSIPMA 255 (287)
T ss_dssp EEEEECBTTTBSCHHHHHHCSEEEECCCS
T ss_pred EEEEECCCCCCCCHHHHHhCCeEEEECCC
Confidence 9999999999999999999999994
No 4
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis}
Probab=100.00 E-value=2.2e-44 Score=334.12 Aligned_cols=206 Identities=23% Similarity=0.257 Sum_probs=178.7
Q ss_pred cCCCCHHHHHHHhhhccccccccCCcEEEEehHHHHHHHhcCCcccccceeeeEEEeccCcCccccccccCCceEEeCH-
Q 041553 83 TSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSS- 161 (315)
Q Consensus 83 tS~~N~~vK~~~kL~~~~k~R~~~g~~lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~l~~~l~~~~~~v~~vs~- 161 (315)
+|++||++|++++|++ +|+|++++.|+|||.|+|+|||++ . .++.+|++++.. .+++...+++++.+++
T Consensus 3 ~s~~n~~ik~~~~L~~-~k~R~~~g~f~veG~~~v~eal~~-~-------~i~~l~~~~~~~-~~l~~~~~~~v~~v~~~ 72 (257)
T 2i6d_A 3 AMLSANQIKFLRSLRE-RKYRLREQAFAVEGPKLVGEMLPF-Y-------RCRMLVGTAAML-RAVSTPHDAEVVELPES 72 (257)
T ss_dssp CCCCHHHHHHHHHTTS-HHHHHHHTEEEEESHHHHHHHGGG-S-------CEEEEEEEHHHH-HTSCCCTTCEEEEECTT
T ss_pred CCcCCHHHHHHHHHhc-ccchhhcCcEEEEcHHHHHHHHhc-C-------CcCEEEEEcCch-HHHHHhcCCCEEEeChH
Confidence 7999999999999987 689999999999999999999987 4 588999987631 1223234578999999
Q ss_pred HHHHhhcCCCCCcceeEEEEEecCCCCCccchhhhhcccccCCCCCcEEEEEecCCCcCcHHHHHHHHhHhcCCeEEECC
Q 041553 162 VVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLP 241 (315)
Q Consensus 162 ~~l~kLs~~~~~qGi~avAv~~~p~~~~~l~~~~~~~~~~~~~~~~~~~lvLD~I~DP~NlGaIiRsA~A~Gv~~Vil~~ 241 (315)
+.|++++++.+|||+ +|++..|.. ++++ . .+++|+||+|+||+|+|||+|||+|||+++|++++
T Consensus 73 ~~l~~ls~~~~~qGv--~a~~~~~~~--~l~~---------~---~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~ 136 (257)
T 2i6d_A 73 FDFKRISTQTTPQPL--MAVFDLPAE--PEPV---------V---EGLTLLLDGVQDPGNVGTILRTADWFGIRHVWLGT 136 (257)
T ss_dssp CCGGGTCCSSSCCSE--EEEEECCCC--CCCC---------C---CSEEEEEESCCCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred HHHHHHhcCCCCCeE--EEEEECCCC--ChHH---------h---CCeEEEEECCCCcchHHHHHHHHHHhCCCEEEEcC
Confidence 999999999999998 566665541 3321 1 25899999999999999999999999999999999
Q ss_pred CCCCCCChhHHHhhcccceeccEE-EccHHHHHHHHhhCCcEEEEEecC-------------------CCCCCCCCCHHH
Q 041553 242 GCCDPFSEKALRASRGACFQLPIV-SGSWYHLEVLKDEFQMKLLAGHAG-------------------GNEEPRQVLQLS 301 (315)
Q Consensus 242 ~~~d~~~~kv~RaS~Ga~~~lpi~-~~~~~~l~~~~~~~g~~ivat~~~-------------------~G~E~~Gls~~~ 301 (315)
+++|+|+++++|+|||++|++|++ ..++.++++.+++.|++++|++.. ||||+.||++++
T Consensus 137 ~~~~~~~~~v~ras~Ga~~~l~~~~~~~l~~~l~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~~alv~GnE~~Gls~~~ 216 (257)
T 2i6d_A 137 GSADVFSPKVVQASMGALARVQPTPLKNTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEV 216 (257)
T ss_dssp TCCCTTSHHHHHTSTTGGGTCEEEECSCHHHHHHHHHHTTCCEEEEEEEEEETTTSCCCCTTSCEEEEEEBTTTBSCHHH
T ss_pred CCCCcCCHHHheecCCcceeeeEEEeCCHHHHHHHHHHCCCEEEEEECCCCccHHHhhhCcCCCEEEEECCCCCCCCHHH
Confidence 999999999999999999999998 556888888889999999987642 899999999999
Q ss_pred HHhcCcEEEccCC
Q 041553 302 QELADSFAGVPLC 314 (315)
Q Consensus 302 ~~~cD~~v~IPm~ 314 (315)
++.||..|+|||.
T Consensus 217 ~~~~d~~v~IPm~ 229 (257)
T 2i6d_A 217 AAEITDRLTIPAS 229 (257)
T ss_dssp HTTCSEEEECCCC
T ss_pred HHhCCeEEEECCC
Confidence 9999999999995
No 5
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3
Probab=100.00 E-value=4.2e-40 Score=304.72 Aligned_cols=197 Identities=19% Similarity=0.222 Sum_probs=160.8
Q ss_pred cccCCcEEEEehHHHHHHHhcCCcccccceeeeEEEeccCcC---ccccc---cccCCceEEeCHHHHHhhcCCCCCcce
Q 041553 103 RHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE---VPEGL---DNISTHTVRVSSVVMKKLSGVQSSESI 176 (315)
Q Consensus 103 R~~~g~~lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~---l~~~l---~~~~~~v~~vs~~~l~kLs~~~~~qGi 176 (315)
|++++.|+|||.|+|+|||+++.. .++.+|++++.. +.+++ +..+++++.++++.|++++++.+|||+
T Consensus 7 r~~~~~~~veG~~~V~eal~~~~~------~i~~l~~~~~~~~~~~~~l~~~~~~~~i~v~~v~~~~l~~ls~~~~~qGv 80 (253)
T 1gz0_A 7 RGSHMSEMIYGIHAVQALLERAPE------RFQEVFILKGREDKRLLPLIHALESQGVVIQLANRQYLDEKSDGAVHQGI 80 (253)
T ss_dssp -----CEEEESHHHHHHHHHSCGG------GEEEEEEESSCCCTTTHHHHHHHHHHTCEEEEECSHHHHHTTTSCCCTTE
T ss_pred cCCCCcEEEEEHHHHHHHHhcCCC------CeEEEEEECCccchhHHHHHHHHHHCCCcEEEeCHHHHHHHhCCCCCcEE
Confidence 677899999999999999997632 588999987631 22333 235689999999999999999999998
Q ss_pred eEEEEEecCCCC--CccchhhhhcccccCCCCCcEEEEEecCCCcCcHHHHHHHHhHhcCCeEEECCCCCCCCChhHHHh
Q 041553 177 EAIALMKIPTSV--FSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA 254 (315)
Q Consensus 177 ~avAv~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~lvLD~I~DP~NlGaIiRsA~A~Gv~~Vil~~~~~d~~~~kv~Ra 254 (315)
+|++..+... .++.++.. ....+++|+||+|+||+|+|||+|||+|||+++|+++++++|+|+++++|+
T Consensus 81 --~a~~~~~~~~~~~~l~~~~~-------~~~~~~~lvLd~v~dp~NlGaI~Rta~a~G~~~vil~~~~~~~~~~~~~ra 151 (253)
T 1gz0_A 81 --IARVKPGRQYQENDLPDLIA-------SLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKV 151 (253)
T ss_dssp --EEEECCCCCCCGGGHHHHHH-------TCSSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHH
T ss_pred --EEEEeccccCcHHHHHHHHh-------ccCCCEEEEEeCCCCcCcHHHHHHHHHHhCCCEEEEeCCCCCCCCHHHHhh
Confidence 5666654421 13332211 012568999999999999999999999999999999999999999999999
Q ss_pred hcccceeccEEEc-cHHHHHHHHhhCCcEEEEEecC-----------------CCCCCCCCCHHHHHhcCcEEEccCC
Q 041553 255 SRGACFQLPIVSG-SWYHLEVLKDEFQMKLLAGHAG-----------------GNEEPRQVLQLSQELADSFAGVPLC 314 (315)
Q Consensus 255 S~Ga~~~lpi~~~-~~~~l~~~~~~~g~~ivat~~~-----------------~G~E~~Gls~~~~~~cD~~v~IPm~ 314 (315)
|||++|++|+++. ++.++++.+++.|++++|++.. ||||++||++++++.||..|+|||.
T Consensus 152 s~Ga~~~l~~~~~~~~~~~l~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~~v~IPm~ 229 (253)
T 1gz0_A 152 ACGAAESVPLIRVTNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMA 229 (253)
T ss_dssp HTTHHHHSCEEEESCHHHHHHHHHHTTCEEEEECTTCSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCS
T ss_pred hcchheEEEEEEeCCHHHHHHHHHHCCCEEEEEECCCCcchhhccCCCCEEEEECCCCcCcCHHHHHhCCEEEEECCC
Confidence 9999999999986 6888888889999999998754 8999999999999999999999994
No 6
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0
Probab=99.94 E-value=1.1e-27 Score=207.18 Aligned_cols=108 Identities=14% Similarity=0.021 Sum_probs=100.6
Q ss_pred CcEEEEEecCCCcCcHHHHHHHHhHhcCCeEEECCCCCCCCChhHHHhhcccceeccEEEc-cHHHHHHHHhhCCcEEEE
Q 041553 207 IHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG-SWYHLEVLKDEFQMKLLA 285 (315)
Q Consensus 207 ~~~~lvLD~I~DP~NlGaIiRsA~A~Gv~~Vil~~~~~d~~~~kv~RaS~Ga~~~lpi~~~-~~~~l~~~~~~~g~~iva 285 (315)
+.++|+||+++||+|+|+|+|||+|||++.|++.+.+++++++++.|+|+|++|++|+.+. ++.++++.+++.|+++++
T Consensus 4 ~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~viv~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~l~~~g~~i~~ 83 (160)
T 3e5y_A 4 SMFNVVLVEPEIPPNTGNVIRLCANTGARLHLIEPLGFPLDDAKMRRAGLDYHEYAQMRVHRDWDAFVAAEAPDPARMFA 83 (160)
T ss_dssp -CCEEEEESCCCHHHHHHHHHHHHHHTCEEEEESSCSSCCCHHHHHHTTCCHHHHHTCEEESSHHHHHHHHCCCGGGEEE
T ss_pred CcEEEEEeCCCCCCcHHHHHHHHHHcCCcEEEECCCCCCCccHHHHHHcCCchhhcceEEeCCHHHHHHHHHhCCCEEEE
Confidence 4589999999999999999999999999999999988999999999999999999999986 688888888889999999
Q ss_pred EecC-----------------CCCCCCCCCHHHHHh--cCcEEEccCC
Q 041553 286 GHAG-----------------GNEEPRQVLQLSQEL--ADSFAGVPLC 314 (315)
Q Consensus 286 t~~~-----------------~G~E~~Gls~~~~~~--cD~~v~IPm~ 314 (315)
++.. ||||++||++++++. ||..|+|||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~ 131 (160)
T 3e5y_A 84 FTTRGSGRFHDRAFEPGDWFVFGAETRGLAPALVDRFAPEQRVRLPMR 131 (160)
T ss_dssp ECSTTCEEGGGSCCCTTCEEEEEBTTTBSCHHHHTTSCGGGEEECCCC
T ss_pred EecCCCccccccCCCCCEEEEECCCcCCCCHHHHhhccCCeEEEEcCC
Confidence 8764 999999999999999 9999999995
No 7
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=99.94 E-value=5.5e-27 Score=203.84 Aligned_cols=107 Identities=15% Similarity=0.008 Sum_probs=99.9
Q ss_pred cEEEEEecCCCcCcHHHHHHHHhHhcCCeEEECCCCCCCCChhHHHhhcccceeccEEEc-cHHHHHHHHhh---CCcEE
Q 041553 208 HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG-SWYHLEVLKDE---FQMKL 283 (315)
Q Consensus 208 ~~~lvLD~I~DP~NlGaIiRsA~A~Gv~~Vil~~~~~d~~~~kv~RaS~Ga~~~lpi~~~-~~~~l~~~~~~---~g~~i 283 (315)
+++|+||+++||+|+|+|+|||+|||++.|++.+.+++++++++.|+|+|++|++|+.+. +++++++.+++ .|+++
T Consensus 4 ~~~vvL~~~~dp~NlGaI~Rta~a~G~~~viv~~~~~~~~~~~~~ras~g~~~~~~~~~~~~l~~~l~~lk~~~~~g~~i 83 (165)
T 3n4j_A 4 MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHHHDYQAFLDSEKLDSTQPARL 83 (165)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSCCCHHHHHHTTCCHHHHTTCEEESSHHHHHHHTTCCSSSCTTE
T ss_pred cEEEEEeCCCCCCcHHHHHHHHHHcCCeEEEECCCCCCCccHHHHHhccCceeecCeEEeCCHHHHHHHHHhhccCCCEE
Confidence 589999999999999999999999999999999998899999999999999999999986 68888888787 89999
Q ss_pred EEEecC-----------------CCCCCCCCCHHHHHh--cCcEEEccCC
Q 041553 284 LAGHAG-----------------GNEEPRQVLQLSQEL--ADSFAGVPLC 314 (315)
Q Consensus 284 vat~~~-----------------~G~E~~Gls~~~~~~--cD~~v~IPm~ 314 (315)
+|++.. ||+|+.||++++++. ||..|+|||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~~~d~~v~IPm~ 133 (165)
T 3n4j_A 84 FALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDALPAQQKIRIPMQ 133 (165)
T ss_dssp EEECTTCSSBTTTSCCCTTEEEEECCTTTCSCHHHHTTSCGGGEEBCCCC
T ss_pred EEEEcCCCcchhhccCCCCeEEEECCCCCCCCHHHHhhccCCeEEEECCC
Confidence 998764 999999999999999 9999999994
No 8
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=99.92 E-value=8.7e-26 Score=199.43 Aligned_cols=107 Identities=21% Similarity=0.132 Sum_probs=96.3
Q ss_pred CCcEEEEEecCCCcCcHHHHHHHHhHhcCCeEEECCCCCCCCChhHH-HhhcccceeccEEEc---cHHHHHHHHhhCCc
Q 041553 206 SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL-RASRGACFQLPIVSG---SWYHLEVLKDEFQM 281 (315)
Q Consensus 206 ~~~~~lvLD~I~DP~NlGaIiRsA~A~Gv~~Vil~~~~~d~~~~kv~-RaS~Ga~~~lpi~~~---~~~~l~~~~~~~g~ 281 (315)
..+++|+||+|+||+|+|+|+|||+|||+++|++.+ .++++++++ |+|+|+.|++|+.+. ++.++++.+++.|+
T Consensus 24 ~~~~~vvLd~i~dp~NlGaI~Rta~a~G~~~vil~~--~~~~~~k~~~r~s~ga~~~l~~~~~~~~~~~~~l~~lk~~g~ 101 (184)
T 2ha8_A 24 ISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGS--LQCISDKQFQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGY 101 (184)
T ss_dssp CCCCEEECTTCCCHHHHHHHHHHHHHTTCSEEEESC--GGGGGSHHHHHHHTTGGGTSCEEECCGGGHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCCcHHHHHHHHHHhCCCEEEECC--CCCCCcccceeecCCccceEEEEEEcCCCHHHHHHHHHHCCC
Confidence 356899999999999999999999999999999976 456888888 889999999999974 57787787888999
Q ss_pred EEEEEecC------------------CCCCCCCCCHHHHHhcCcEEEccCC
Q 041553 282 KLLAGHAG------------------GNEEPRQVLQLSQELADSFAGVPLC 314 (315)
Q Consensus 282 ~ivat~~~------------------~G~E~~Gls~~~~~~cD~~v~IPm~ 314 (315)
+++|++.. ||+|++||++++++.||..|+|||.
T Consensus 102 ~i~~~~~~~~~~~~~~~~~~~~~alV~G~E~~Gls~~~l~~~d~~v~IPm~ 152 (184)
T 2ha8_A 102 TIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQ 152 (184)
T ss_dssp EEEEECCCTTCEEGGGCCCCSSEEEEECBTTTBSCHHHHTTCSEEEECCCC
T ss_pred EEEEEECCCCCcchhhccCCCCEEEEECCcccCCCHHHHHhCCcEEEECCC
Confidence 99998753 8999999999999999999999994
No 9
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0
Probab=99.92 E-value=9.9e-26 Score=199.04 Aligned_cols=106 Identities=18% Similarity=-0.010 Sum_probs=89.1
Q ss_pred CCcEEEEEecCCCcCcHHHHHHHHhHhcCCeEEECCCCCCCCChhHHHhhcccceeccEEEc-cHHHHHHHHhhCCcEEE
Q 041553 206 SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG-SWYHLEVLKDEFQMKLL 284 (315)
Q Consensus 206 ~~~~~lvLD~I~DP~NlGaIiRsA~A~Gv~~Vil~~~~~d~~~~kv~RaS~Ga~~~lpi~~~-~~~~l~~~~~~~g~~iv 284 (315)
..+++|+||+|+||+|+|+|+|||+|||++.||+.+.+++++++++.|+|+|++|++|+.+. ++.++++.+ |++++
T Consensus 15 ~~~l~vvLd~v~dP~NlGaI~Rta~afG~~~viv~~~~~~~~~~~~~ras~g~~~~v~i~~~~~l~~~l~~l---g~~i~ 91 (182)
T 3l8u_A 15 LGRNHVVLFQPQIPANTGNIARTCAATNTSLHIIRPMGFPIDDKKMKRAGLDYWDKLDVHFYDSLNDFMNIC---SGKLH 91 (182)
T ss_dssp CCCEEEEEESCCCHHHHHHHHHHHHHHTCEEEEESCCSSCCCTTTC------CCC-CCEEEESSHHHHHHHC---CSEEE
T ss_pred CCCEEEEEeCCCCcCcHHHHHHHHHHcCCcEEEECCCCCCCCcHHHHHhCcChhhhCCeEEcCCHHHHHHHC---CCEEE
Confidence 46799999999999999999999999999999999999999999999999999999999986 576665554 88999
Q ss_pred EEecC-------------------CCCCCCCCCHHHHH-hcCcEEEccCC
Q 041553 285 AGHAG-------------------GNEEPRQVLQLSQE-LADSFAGVPLC 314 (315)
Q Consensus 285 at~~~-------------------~G~E~~Gls~~~~~-~cD~~v~IPm~ 314 (315)
+++.. ||+|+.||++++++ .||..|+|||.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~~d~~v~IPm~ 141 (182)
T 3l8u_A 92 LITKFANKTYSDENYDDSEHHYFLFGREDKGLPEEFMRQHSEKALRIPVN 141 (182)
T ss_dssp EECSSCSSBGGGSCCCSSSCEEEEECBTTTBSCHHHHHHTGGGEEBCCCC
T ss_pred EEEcCCCccccccccCCCCCEEEEECCccCCCCHHHHHHhCCeEEEECCC
Confidence 87653 89999999999996 99999999995
No 10
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=99.92 E-value=1.2e-25 Score=200.13 Aligned_cols=107 Identities=17% Similarity=0.083 Sum_probs=97.3
Q ss_pred CCcEEEEEecCCCcCcHHHHHHHHhHhcCCeEEECCCCCCCCChhHHHhhcccceeccEEEc-cHHHHHHHHhhCCcEEE
Q 041553 206 SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG-SWYHLEVLKDEFQMKLL 284 (315)
Q Consensus 206 ~~~~~lvLD~I~DP~NlGaIiRsA~A~Gv~~Vil~~~~~d~~~~kv~RaS~Ga~~~lpi~~~-~~~~l~~~~~~~g~~iv 284 (315)
.++++||||+|+||+|+|+|+|||+|||+++|++.+++.+. +++.|+|+|+.+++|+... ++.++++.+++.|++++
T Consensus 20 ~~~~~vvLd~~~dp~NlGaI~Rta~a~G~~~v~l~~~~~~~--~~~~r~s~Ga~~~l~~~~~~~l~~~l~~l~~~g~~i~ 97 (194)
T 1v2x_A 20 QPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGV--PTFNETSGGSHKWVYLRVHPDLHEAFRFLKERGFTVY 97 (194)
T ss_dssp BTTEEEEEESCCCHHHHHHHHHHHHHHTBSEEEEESGGGGS--CCCCSSCSSGGGTSEEEEESSHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEEeCCCCcChHHHHHHHHHHhCCCEEEEeCCCCCc--hhhHHHCCCChheeeeEecCCHHHHHHHHHHCCCEEE
Confidence 35689999999999999999999999999999998876664 7899999999999999885 68888888888999999
Q ss_pred EEecC------------------CCCCCCCCCHHHHHhcCcEEEccCC
Q 041553 285 AGHAG------------------GNEEPRQVLQLSQELADSFAGVPLC 314 (315)
Q Consensus 285 at~~~------------------~G~E~~Gls~~~~~~cD~~v~IPm~ 314 (315)
|++.. ||+|+.||++++++.||..|+|||.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~alv~G~E~~Gls~~~l~~~d~~v~IPm~ 145 (194)
T 1v2x_A 98 ATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPML 145 (194)
T ss_dssp EECCCTTSEEGGGSCTTSSEEEEECBTTTBSCHHHHHHSSEEEECCCC
T ss_pred EEecCCCCccHhHcccCCCeEEEECCCCCCCCHHHHHhCCeEEEECCC
Confidence 98842 8999999999999999999999994
No 11
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus}
Probab=99.91 E-value=6.8e-25 Score=197.72 Aligned_cols=107 Identities=14% Similarity=0.063 Sum_probs=96.2
Q ss_pred CcEEEEEecCCCcCcHHHHHHHHhHhcCCeEEECCCCCCCCChhHHHhhcccceeccEEEc-cHHHHHHHHhhCCcEEEE
Q 041553 207 IHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG-SWYHLEVLKDEFQMKLLA 285 (315)
Q Consensus 207 ~~~~lvLD~I~DP~NlGaIiRsA~A~Gv~~Vil~~~~~d~~~~kv~RaS~Ga~~~lpi~~~-~~~~l~~~~~~~g~~iva 285 (315)
++++||||+|+||+|+|+|+|||+|||+++|++.+++.++ ...+.|+|+|+.|++|+.+. ++.++++.+++.|++++|
T Consensus 24 ~~l~vvLd~i~dp~NlGaI~Rta~a~G~~~v~lv~~~~~~-~~~~~r~s~Ga~~~l~~~~~~~l~~~l~~l~~~g~~i~~ 102 (211)
T 1zjr_A 24 KDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEGKK-AKINEGITQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVA 102 (211)
T ss_dssp EEEEEEEESCCCHHHHHHHHHHHHHHTEEEEEEECSSTTC-CCCCHHHHTTGGGSSEEEECSCHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEEECCCCcCcHHHHHHHHHHhCCCEEEEeCCCcCc-hHHHHHHcCCCcccceeEecCCHHHHHHHHHHCCCEEEE
Confidence 4689999999999999999999999999999998877664 33556999999999999986 688888888989999999
Q ss_pred EecC------------------CCCCCCCCCHHHHHhcCcEEEccCC
Q 041553 286 GHAG------------------GNEEPRQVLQLSQELADSFAGVPLC 314 (315)
Q Consensus 286 t~~~------------------~G~E~~Gls~~~~~~cD~~v~IPm~ 314 (315)
++.. ||+|+.||++++++.||..|+|||.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~alV~G~E~~GLs~~~l~~~d~~v~IPm~ 149 (211)
T 1zjr_A 103 TWLSKESVNFREVDYTKPTVLVVGNELQGVSPEIVEIADKKIVIPMY 149 (211)
T ss_dssp EBCSTTSEEGGGSCTTSSEEEEEECBTTBSCHHHHTTCSEEEECCCC
T ss_pred EecCCCCcchhhcccCCCEEEEECCcccCCCHHHHHhCCcEEEeCCC
Confidence 8852 9999999999999999999999994
No 12
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=99.88 E-value=1.7e-23 Score=182.73 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=84.7
Q ss_pred CcEEEEEecCCCcCcHHHHHHHHhHhcCCeEEECCC-CCCCC-ChhHHHhhcccceeccEEEc--cHHHHHHHHhhCCcE
Q 041553 207 IHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPG-CCDPF-SEKALRASRGACFQLPIVSG--SWYHLEVLKDEFQMK 282 (315)
Q Consensus 207 ~~~~lvLD~I~DP~NlGaIiRsA~A~Gv~~Vil~~~-~~d~~-~~kv~RaS~Ga~~~lpi~~~--~~~~l~~~~~~~g~~ 282 (315)
+.++|+||+++||+|+|+|+|||++||+++|++.+. +.|+| +++++|+|+|+.|++|+++. +++++++. .+ +
T Consensus 9 ~~~~vvL~~~~dp~N~Gai~Rta~a~G~~~l~lv~~~~~d~~~~~~~~r~a~Ga~~~l~~~~~~~~l~~~l~~---~~-~ 84 (173)
T 3kty_A 9 SRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAP---VT-L 84 (173)
T ss_dssp TTEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCSSTTGGGSHHHHHHHTTCHHHHHTCEEESCHHHHHTT---CS-E
T ss_pred CCeEEEEeCCCCCCcHHHHHHHHHHcCCCEEEEeCCCccccCCCHHHHHHcCCHHHhhchheecCCHHHHHHh---CC-e
Confidence 458999999999999999999999999999998654 45665 99999999999999996542 45554433 33 4
Q ss_pred EEEEec-----------------------C----------CCCCCCCCCHHHHHhcCcEEEccCC
Q 041553 283 LLAGHA-----------------------G----------GNEEPRQVLQLSQELADSFAGVPLC 314 (315)
Q Consensus 283 ivat~~-----------------------~----------~G~E~~Gls~~~~~~cD~~v~IPm~ 314 (315)
++|++. . ||+|+.||++++++.||..|+|||.
T Consensus 85 v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~alvfG~E~~GLs~~~l~~~d~~v~IPm~ 149 (173)
T 3kty_A 85 AFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHRICHIPAN 149 (173)
T ss_dssp EEEEECC-----CCCEEHHHHHHHHHHHHHHSSSCCEEEEECCCC-CCCHHHHHTSSEEEECCCC
T ss_pred EEEEccccccCCCCccCHHHHHHHHhhhhccccCCCEEEEECCCCCCCCHHHHHhCCeEEEECCC
Confidence 665531 1 9999999999999999999999994
No 13
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=99.83 E-value=2.3e-21 Score=178.41 Aligned_cols=101 Identities=16% Similarity=0.106 Sum_probs=86.6
Q ss_pred cEEEEEecCCCcCcHHHHHHHHhHhcCCeEEECCCCCCCCChhHHHhhcccceeccEEEc--cHHHHHHHHhhCCcEEEE
Q 041553 208 HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG--SWYHLEVLKDEFQMKLLA 285 (315)
Q Consensus 208 ~~~lvLD~I~DP~NlGaIiRsA~A~Gv~~Vil~~~~~d~~~~kv~RaS~Ga~~~lpi~~~--~~~~l~~~~~~~g~~iva 285 (315)
.+.||||+++||+|+|+|+|||++||+++|++.+++ +++++++|+|+||.+++|.++. ++++++ +..+ .++|
T Consensus 7 ~l~vVL~~~~dP~NiGai~Rta~a~G~~~l~lv~p~--~~~~~a~r~A~GA~~~l~~~~~~~~l~eal---~~~~-~vva 80 (244)
T 3ilk_A 7 NIRIVLIETSHSGNIGSAARAMKTMGLTQLCLVSPK--SVDEQSYALSAGAENIVKNARVVDSFDEAV---DDCS-LVIG 80 (244)
T ss_dssp TEEEEEESCCSHHHHHHHHHHHHHHTCCEEEEESCS--CCSHHHHHTTTTCHHHHHHCEEESSHHHHT---TTCS-EEEE
T ss_pred CcEEEEECCCCcChHHHHHHHHHHhCCCEEEEECCC--CCCHHHHHHcCChhheeceeEEeCCHHHHH---HhCC-eEEE
Confidence 478999999999999999999999999999999887 8999999999999999996542 454443 3344 6777
Q ss_pred EecC----------------------------CCCCCCCCCHHHHHhcCcEEEccCC
Q 041553 286 GHAG----------------------------GNEEPRQVLQLSQELADSFAGVPLC 314 (315)
Q Consensus 286 t~~~----------------------------~G~E~~Gls~~~~~~cD~~v~IPm~ 314 (315)
++.. ||+|+.||++++++.||..|+|||.
T Consensus 81 tt~~~~~~~~~~~~p~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~~v~IP~~ 137 (244)
T 3ilk_A 81 TSARLRHLQNTLIEPRECAEKVVAYKGKIAIVFGRERIGLTNEELLKCHYHLNIPAN 137 (244)
T ss_dssp ECCCCGGGTTTEECHHHHHHHHHHCSSCEEEEECBTTTBCCHHHHHTCSEEECCCCC
T ss_pred EccCCCCCCcccCCHHHHHHHHhhcCCCEEEEECCCCCCCCHHHHHhCCeEEEecCC
Confidence 6531 9999999999999999999999994
No 14
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides}
Probab=99.82 E-value=6.4e-21 Score=175.89 Aligned_cols=103 Identities=18% Similarity=0.125 Sum_probs=87.8
Q ss_pred cEEEEEecCCCcCcHHHHHHHHhHhcCCeEEECCCCCCCCChhHHHhhcccceeccEEEc--cHHHHHHHHhhCCcEEEE
Q 041553 208 HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG--SWYHLEVLKDEFQMKLLA 285 (315)
Q Consensus 208 ~~~lvLD~I~DP~NlGaIiRsA~A~Gv~~Vil~~~~~d~~~~kv~RaS~Ga~~~lpi~~~--~~~~l~~~~~~~g~~iva 285 (315)
++.||||+++||+|+|+|+|+|++||++++++.+.+++.++++++|+|+||.+.++.++. ++++++ +..+ .++|
T Consensus 4 ~~~vVL~~~~dP~NiGai~Rta~a~G~~~l~Lv~p~~~~~~~~a~~~a~GA~~~l~~~~~~~~l~eal---~~~~-~v~a 79 (249)
T 3onp_A 4 EPVFILVRPQMGENIGAAARAMLNFGLGRLRIVDPRDGWPNPKAVAMASGAGRLLDHAGLFPTVAEAI---RDCD-YVFA 79 (249)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCTTCSSCHHHHHHHGGGHHHHHTCEEESSHHHHH---TTCS-EEEE
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCcCCCcHHHHHHcCCccccCceEEEeCCHHHHH---HhCC-eEEE
Confidence 568999999999999999999999999999999888788899999999999998887763 455444 3333 4666
Q ss_pred EecC-------------------------------CCCCCCCCCHHHHHhcCcEEEccCC
Q 041553 286 GHAG-------------------------------GNEEPRQVLQLSQELADSFAGVPLC 314 (315)
Q Consensus 286 t~~~-------------------------------~G~E~~Gls~~~~~~cD~~v~IPm~ 314 (315)
++.. ||+|+.||+++.++.||..|+|||.
T Consensus 80 tt~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~aLVfG~E~~GLs~e~l~~~d~~v~IP~~ 139 (249)
T 3onp_A 80 TTARGRELTKPVMTPERAMAHGRALTGEGRRVGILFGPERTGLENEDVALANAIVTVPVN 139 (249)
T ss_dssp EESSCCCSSSCEECHHHHHHHHHHHHHTTCCEEEEECCTTTCCCHHHHTTSSEEEECCCC
T ss_pred EcCCCCCCCcccCCHHHHHHHHHHhhccCCCEEEEECCCcCCCCHHHHHhCCeEEEEcCC
Confidence 5421 8999999999999999999999994
No 15
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090}
Probab=99.81 E-value=1.4e-20 Score=170.93 Aligned_cols=105 Identities=11% Similarity=0.025 Sum_probs=85.4
Q ss_pred cEEEEEecCCCcCcHHHHHHHHhHhcCCeEEECCCCCCC-------------------CChhHHHhhcccceeccEEEcc
Q 041553 208 HRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDP-------------------FSEKALRASRGACFQLPIVSGS 268 (315)
Q Consensus 208 ~~~lvLD~I~DP~NlGaIiRsA~A~Gv~~Vil~~~~~d~-------------------~~~kv~RaS~Ga~~~lpi~~~~ 268 (315)
.++||||+++||+|+|+|+|||++||+++|++.+.++++ +++++.|+|+|+.++++.++.
T Consensus 17 ~l~vVLd~~~dP~NiGaI~Rta~afG~~~l~Lv~p~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~aaGA~~~l~~~~v- 95 (223)
T 3ic6_A 17 NIRIILTRTSHPANIGSAARAMKTMGLHRLTIVTPNLMATPMTENPPVFNPDDVQSFALPEESFILASGAADVLHNAEI- 95 (223)
T ss_dssp GEEEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCCCCCBTTBSSCCCCCTTCGGGCCCCHHHHHHHGGGHHHHHTCEE-
T ss_pred CEEEEEeCCCCCChHHHHHHHHHHcCCCEEEEeCCCccccccccccccccccccccccCCHHHHHHhCCccccCceEEE-
Confidence 579999999999999999999999999999998766654 468999999999999987653
Q ss_pred HHHHHHHHhhCCcEEEEEec--------------------------C-----CCCCCCCCCHHHHHhcCcEEEccCC
Q 041553 269 WYHLEVLKDEFQMKLLAGHA--------------------------G-----GNEEPRQVLQLSQELADSFAGVPLC 314 (315)
Q Consensus 269 ~~~l~~~~~~~g~~ivat~~--------------------------~-----~G~E~~Gls~~~~~~cD~~v~IPm~ 314 (315)
..++.+.++.. .+++|++. . ||+|+.||++++++.||..|+|||.
T Consensus 96 ~~~l~eal~~~-~~vvatt~~~~~~~~~~~~p~e~a~~~~~~~~~~~~~~lv~G~E~~Gl~~~~~~~~d~~v~IPm~ 171 (223)
T 3ic6_A 96 VATLDEALADT-TIACALTSRRREITAPLQTPRDLVPELLQAANRGEKVALVFGNETFGLSIEEVRACNRLMTINGN 171 (223)
T ss_dssp ESCHHHHHTTE-EEEEEECCSCC--CCCCBCHHHHHHHHHHHHHTTCEEEEEECBTTTBCCHHHHHTCSEEECCCCC
T ss_pred eCCHHHHHHhC-CeEEEEeccCCcccccccCHHHHHHHHHHhhcccCCEEEEECCCCCCCCHHHHHhCceEEEecCC
Confidence 11233333433 45666531 1 8999999999999999999999994
No 16
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=97.47 E-value=0.00028 Score=62.28 Aligned_cols=92 Identities=11% Similarity=0.021 Sum_probs=64.5
Q ss_pred CcHHHHHHHHhHhcCCeEEECCCCCCCCChhHHHh------hcccc------eeccEEEc--cHHHHHHHHh---hCCcE
Q 041553 220 GNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRA------SRGAC------FQLPIVSG--SWYHLEVLKD---EFQMK 282 (315)
Q Consensus 220 ~NlGaIiRsA~A~Gv~~Vil~~~~~d~~~~kv~Ra------S~Ga~------~~lpi~~~--~~~~l~~~~~---~~g~~ 282 (315)
-|+|.|.|+|.-||++..+|.....++- ..+.+. +.|+. .-+...+. ++++.++.+. ..+..
T Consensus 29 ~dihdiARamkt~Gl~~l~LV~P~~~~~-~~a~~~~~~w~~~~Ga~~np~r~d~L~~a~vv~sL~eAl~~~~~~~g~~p~ 107 (192)
T 3dcm_X 29 LDVHDIARTARTYNLKGYYIVTNLRAQQ-DMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIESVEGERPL 107 (192)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCHHHH-HHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHHHHHHHHHHHSSCCE
T ss_pred ccHHHHHHHHHhcCCceEEEECCccccH-HHHHHHHHhhhcccCcccCcCHHHHhccCeEECCHHHHHHHHHhhcCCccE
Confidence 4699999999999999999987654321 112221 45663 23333332 4666555544 25678
Q ss_pred EEEEecC-------------------------CCCCCCCCCHHHHHhcCcEE-EccC
Q 041553 283 LLAGHAG-------------------------GNEEPRQVLQLSQELADSFA-GVPL 313 (315)
Q Consensus 283 ivat~~~-------------------------~G~E~~Gls~~~~~~cD~~v-~IPm 313 (315)
++||+.. ||. +.||+.+.++.||.++ .||.
T Consensus 108 vvaTsAr~~~~~i~~~el~~~i~~~~~pvalvFG~-~~GLtneel~~cd~~l~~Ip~ 163 (192)
T 3dcm_X 108 IFFTSAKKRENDISFEEGRRIIIETEKPVLILLGT-GWGLPDEILEISDYVLEPIRA 163 (192)
T ss_dssp EEECCSSCCSSCBCHHHHHHHHHHCCSCEEEEECC-TTCCCHHHHTTCSEEBCCTTT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHhCCCCEEEEECC-CCCCCHHHHHhcCEEEccCCC
Confidence 8888753 999 5899999999999999 7986
No 17
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=81.33 E-value=1.7 Score=37.89 Aligned_cols=21 Identities=29% Similarity=0.178 Sum_probs=17.6
Q ss_pred CCCCCCCCCHHHHHhcCcEEEcc
Q 041553 290 GNEEPRQVLQLSQELADSFAGVP 312 (315)
Q Consensus 290 ~G~E~~Gls~~~~~~cD~~v~IP 312 (315)
.|.| -++.++-++||..|.|-
T Consensus 108 VGae--KVP~evYelADyNVaVg 128 (201)
T 2yy8_A 108 VGAE--KVPREVYELADYNVAIG 128 (201)
T ss_dssp ECSS--CCCHHHHHHCSEEEESS
T ss_pred ECCC--cCCHHHHhhcCcceeeC
Confidence 4766 58999999999999874
No 18
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=80.55 E-value=2.2 Score=36.57 Aligned_cols=76 Identities=21% Similarity=0.171 Sum_probs=41.9
Q ss_pred HHHHHhHhcCCeEEECCCCCCCCChhHHHh------hcccceeccEEEccHHHHHHHHhhCCcEEEEEecC---------
Q 041553 225 LLRTAMAFKWGGVFLLPGCCDPFSEKALRA------SRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAG--------- 289 (315)
Q Consensus 225 IiRsA~A~Gv~~Vil~~~~~d~~~~kv~Ra------S~Ga~~~lpi~~~~~~~l~~~~~~~g~~ivat~~~--------- 289 (315)
+.-||-|||++++++... ++++..+ .-|.-|.+. ..+|..+++- .|..++-.+..
T Consensus 24 V~LtARAfGA~~iil~~~-----D~~v~esv~dV~~rwGG~F~ve--~~~w~~~i~~---w~G~VVHLTMYG~~i~dvi~ 93 (178)
T 2o3a_A 24 VALTARAFGAKGIYFDTE-----DKSVFESVRDVVERWGGDFFIK--AVSWKKLLRE---FDGLKVHLTMYGIPLPQKLE 93 (178)
T ss_dssp HHHHHHHTTCSEEEESSC-----CHHHHHHHHHHHHHHCSCCEEE--ECCHHHHHHH---CCSEEEEEEEEEEEHHHHHH
T ss_pred HHHHHHHhCCCeeEEeCC-----CHHHHHHHHHHHHhcCCceEEE--ecCHHHHHHH---cCCEEEEEecCCCchHHHHH
Confidence 345788888888888754 2332221 245556655 3344433222 14344332221
Q ss_pred -----------CCCCCCCCCHHHHHhcCcEEEcc
Q 041553 290 -----------GNEEPRQVLQLSQELADSFAGVP 312 (315)
Q Consensus 290 -----------~G~E~~Gls~~~~~~cD~~v~IP 312 (315)
.|.| -++.++-++||..|.|-
T Consensus 94 ~Ir~~~~iLvVVGae--KVP~evYelADyNVaVg 125 (178)
T 2o3a_A 94 EIKRADKVLVVVGAE--KVPPEVYELCDLNISIG 125 (178)
T ss_dssp HHHTCSEEEEEEC------CTTHHHHSSEEEESS
T ss_pred HhhcCCCEEEEECCC--cCCHHHHhhcCcceeeC
Confidence 6777 58899999999999874
No 19
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=34.20 E-value=88 Score=23.54 Aligned_cols=64 Identities=13% Similarity=0.120 Sum_probs=42.0
Q ss_pred EEEEehHHHHHHHhcCCcccccceeeeEEEeccCcC------ccccccccCCceEE--eCHHHHHhhcCCCCCcceeEEE
Q 041553 109 ALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE------VPEGLDNISTHTVR--VSSVVMKKLSGVQSSESIEAIA 180 (315)
Q Consensus 109 ~lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~------l~~~l~~~~~~v~~--vs~~~l~kLs~~~~~qGi~avA 180 (315)
-++.|.+.+..+++.+. ..-+++..... +.......+++++. -+...|....+....-.+ +|
T Consensus 16 kl~~G~~~v~kai~~gk--------a~lViiA~D~~~~~~~~l~~~c~~~~vp~~~~~~s~~eLG~a~G~~~~~~~--va 85 (101)
T 1w41_A 16 KIVMGARKSIQYAKMGG--------AKLIIVARNARPDIKEDIEYYARLSGIPVYEFEGTSVELGTLLGRPHTVSA--LA 85 (101)
T ss_dssp EEEESHHHHHHHHHHTC--------CSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESSCHHHHHHHTTCSSCCCE--EE
T ss_pred CEeECHHHHHHHHHcCC--------CcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEecCCHHHHHHHhCCCCcEEE--EE
Confidence 38899999999999764 44566665431 22233345788765 489999999887544332 45
Q ss_pred EE
Q 041553 181 LM 182 (315)
Q Consensus 181 v~ 182 (315)
+.
T Consensus 86 i~ 87 (101)
T 1w41_A 86 VV 87 (101)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 20
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=34.05 E-value=1.1e+02 Score=23.59 Aligned_cols=64 Identities=8% Similarity=0.109 Sum_probs=42.4
Q ss_pred EEEEehHHHHHHHhcCCcccccceeeeEEEeccCcC------ccccccccCCceEEe--CHHHHHhhcCCCCCcceeEEE
Q 041553 109 ALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE------VPEGLDNISTHTVRV--SSVVMKKLSGVQSSESIEAIA 180 (315)
Q Consensus 109 ~lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~------l~~~l~~~~~~v~~v--s~~~l~kLs~~~~~qGi~avA 180 (315)
-++.|.+.|..+++.+. ..-+++..+.. +.......+++++.+ +...|....+....-.+ +|
T Consensus 21 kl~~G~~~v~kai~~gk--------a~lViiA~D~~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a~G~~~~~s~--va 90 (110)
T 3cpq_A 21 KVILGSKRTIKFVKHGE--------GKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAVCGKPFPVAA--LL 90 (110)
T ss_dssp EEEESHHHHHHHHHTTC--------CSEEEECTTCBHHHHHHHHHHHHHTTCCEEECCSCHHHHHHHTTCSSCCSE--EE
T ss_pred CeeeCHHHHHHHHHcCC--------ceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCHHHHHHHhCCccceEE--EE
Confidence 38899999999999764 45566665531 223333457887654 88999999887543222 45
Q ss_pred EE
Q 041553 181 LM 182 (315)
Q Consensus 181 v~ 182 (315)
+.
T Consensus 91 I~ 92 (110)
T 3cpq_A 91 VL 92 (110)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 21
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=33.61 E-value=1.2e+02 Score=22.10 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=39.2
Q ss_pred EEEEehHHHHHHHhcCCcccccceeeeEEEeccCcC------ccccccccCCceEEe-CHHHHHhhcCCCCC
Q 041553 109 ALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE------VPEGLDNISTHTVRV-SSVVMKKLSGVQSS 173 (315)
Q Consensus 109 ~lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~------l~~~l~~~~~~v~~v-s~~~l~kLs~~~~~ 173 (315)
-++.|.+.+..+++.+. ..-+++.++.. +..+....+++++.+ +...|.+.++....
T Consensus 11 k~~~G~~~v~kai~~gk--------aklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~Gk~~~ 74 (82)
T 3v7e_A 11 SIIIGTKQTVKALKRGS--------VKEVVVAKDADPILTSSVVSLAEDQGISVSMVESMKKLGKACGIEVG 74 (82)
T ss_dssp EEEESHHHHHHHHTTTC--------EEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHHHHHTCSSC
T ss_pred CeeEcHHHHHHHHHcCC--------eeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCC
Confidence 37889999999998763 56677776532 223334467887765 57778888887544
No 22
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=32.38 E-value=1.2e+02 Score=22.75 Aligned_cols=54 Identities=7% Similarity=0.116 Sum_probs=36.8
Q ss_pred EEEehHHHHHHHhcCCcccccceeeeEEEeccCcC------ccccccccCCceEE-eCHHHHHhhcCCC
Q 041553 110 LVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE------VPEGLDNISTHTVR-VSSVVMKKLSGVQ 171 (315)
Q Consensus 110 lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~------l~~~l~~~~~~v~~-vs~~~l~kLs~~~ 171 (315)
++.|.+.|..+++.+. ..-+++..... +.......+++++. -+...|....+..
T Consensus 19 ~v~G~~~v~kai~~gk--------a~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~~eLG~a~Gk~ 79 (101)
T 3on1_A 19 LLTGEEQVVKAVQNGQ--------VTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNRQMLGRAIGKH 79 (101)
T ss_dssp EEESHHHHHHHHHTTC--------CSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHHHHTTSS
T ss_pred EeECHHHHHHHHHcCC--------CcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCc
Confidence 8889999999999774 45566665531 22223335677654 4788888888875
No 23
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=30.78 E-value=2e+02 Score=25.24 Aligned_cols=81 Identities=9% Similarity=-0.137 Sum_probs=47.6
Q ss_pred HHhHhcCCeEEECCCCCCCCChhHHHhhcccceeccEEEccHHHHHHHHhhCCcEEEEEecCCCC------CCCCCCHHH
Q 041553 228 TAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNE------EPRQVLQLS 301 (315)
Q Consensus 228 sA~A~Gv~~Vil~~~~~d~~~~kv~RaS~Ga~~~lpi~~~~~~~l~~~~~~~g~~ivat~~~~G~------E~~Gls~~~ 301 (315)
.|.++|+|+|.+.... .....+|.-.|.-..+-+...+.+++.+. .+.|...++..+-+.. ...|+ +.+
T Consensus 107 lA~~~gAdGVHLg~~d---l~~~~~r~~~~~~~~iG~S~ht~~Ea~~A-~~~GaDyI~vgpvf~T~tK~~~~~~gl-~~l 181 (243)
T 3o63_A 107 IARAAGADVLHLGQRD---LPVNVARQILAPDTLIGRSTHDPDQVAAA-AAGDADYFCVGPCWPTPTKPGRAAPGL-GLV 181 (243)
T ss_dssp HHHHHTCSEEEECTTS---SCHHHHHHHSCTTCEEEEEECSHHHHHHH-HHSSCSEEEECCSSCCCC-----CCCH-HHH
T ss_pred HHHHhCCCEEEecCCc---CCHHHHHHhhCCCCEEEEeCCCHHHHHHH-hhCCCCEEEEcCccCCCCCCCcchhhH-HHH
Confidence 3889999999997543 34666777777665555555566666655 3457777776553211 12233 234
Q ss_pred HHhcCcE-EEccC
Q 041553 302 QELADSF-AGVPL 313 (315)
Q Consensus 302 ~~~cD~~-v~IPm 313 (315)
.+.+... +.||.
T Consensus 182 ~~~~~~~~~~iPv 194 (243)
T 3o63_A 182 RVAAELGGDDKPW 194 (243)
T ss_dssp HHHHTC---CCCE
T ss_pred HHHHHhccCCCCE
Confidence 5556542 46664
No 24
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=29.14 E-value=1.6e+02 Score=22.17 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=45.1
Q ss_pred CHHHHHHHhhhccccccccCCcEEEEehHHHHHHHhcCCcccccceeeeEEEeccCc------CccccccccCCceEE-e
Q 041553 87 NPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKV------EVPEGLDNISTHTVR-V 159 (315)
Q Consensus 87 N~~vK~~~kL~~~~k~R~~~g~~lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~------~l~~~l~~~~~~v~~-v 159 (315)
|.++-.+..|.. |..+ ++.|.+.+..+++.+. ..-+++.... .+.......+++++. .
T Consensus 4 ~~ki~~~L~la~--kagk-----~v~G~~~v~kai~~gk--------a~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~ 68 (101)
T 3v7q_A 4 GMEWFPLLGLAN--RARK-----VVSGEDLVIKEIRNAR--------AKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVE 68 (101)
T ss_dssp CCTHHHHHHHHH--HTTC-----EEESHHHHHHHHHTTC--------CSEEEEETTSCHHHHHHHHHHHHHTTCCEEEES
T ss_pred cchhHHHhhhhh--hhhh-----cccchhhhHHHHhcCc--------eeEEEEeccccccchhhhcccccccCCCeeeec
Confidence 455556666653 2322 8899999999999874 4566776553 122223345677654 4
Q ss_pred CHHHHHhhcCCC
Q 041553 160 SSVVMKKLSGVQ 171 (315)
Q Consensus 160 s~~~l~kLs~~~ 171 (315)
+...|....+..
T Consensus 69 s~~eLG~A~Gk~ 80 (101)
T 3v7q_A 69 SRAVLGRSIGKE 80 (101)
T ss_dssp CHHHHHHHTTSS
T ss_pred hHHHHHhhhCcc
Confidence 778888888775
No 25
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=28.46 E-value=1.6e+02 Score=23.45 Aligned_cols=64 Identities=25% Similarity=0.284 Sum_probs=42.8
Q ss_pred EEEehHHHHHHHhcCCcccccceeeeEEEeccCcC-------ccccccccCCceEEe-CHHHHHhhcCCCCCcceeEEEE
Q 041553 110 LVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE-------VPEGLDNISTHTVRV-SSVVMKKLSGVQSSESIEAIAL 181 (315)
Q Consensus 110 lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~-------l~~~l~~~~~~v~~v-s~~~l~kLs~~~~~qGi~avAv 181 (315)
++.|.+.|..+++.+. ..-+++..... +.......+++++.+ +...|...++.. .++.++|+
T Consensus 42 lv~G~~~v~kal~~gk--------aklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG~a~G~~--~~v~~vaI 111 (135)
T 2aif_A 42 LRKGANEATKALNRGI--------AEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGRACGVS--RPVIAAAI 111 (135)
T ss_dssp EEESHHHHHHHHHTTC--------EEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHHHHTTCS--SCCSEEEE
T ss_pred cccCHHHHHHHHHcCC--------CeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHHHHhCCC--CcEEEEEE
Confidence 8899999999999773 55666665432 112223357787654 788899998875 34545666
Q ss_pred Ee
Q 041553 182 MK 183 (315)
Q Consensus 182 ~~ 183 (315)
..
T Consensus 112 ~d 113 (135)
T 2aif_A 112 TS 113 (135)
T ss_dssp EC
T ss_pred Ec
Confidence 54
No 26
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=23.74 E-value=1.2e+02 Score=22.90 Aligned_cols=63 Identities=10% Similarity=0.037 Sum_probs=41.9
Q ss_pred EEEehHHHHHHHhcCCcccccceeeeEEEeccCcC------ccccccccCCceE--EeCHHHHHhhcCCCCCcceeEEEE
Q 041553 110 LVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE------VPEGLDNISTHTV--RVSSVVMKKLSGVQSSESIEAIAL 181 (315)
Q Consensus 110 lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~------l~~~l~~~~~~v~--~vs~~~l~kLs~~~~~qGi~avAv 181 (315)
++.|.+.+..+++.+. ..-+++..+.. +.......+++++ .-+...|...++....-. ++|+
T Consensus 23 lv~G~~~v~kai~~gk--------aklViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~a~Gk~~~~~--~vaI 92 (104)
T 4a18_G 23 ATLGYKSTIKAIRNGT--------AKLVFISNNCPTVRKSEIEYYASLAQISIHHFVGSNVELGTACGKYHRCS--TMAI 92 (104)
T ss_dssp EEESHHHHHHHHHHTC--------CCEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSSCCS--EEEE
T ss_pred EeECHHHHHHHHHcCC--------ceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHhCCccCEE--EEEE
Confidence 8899999999999774 45677766532 2222223478877 368889999988754333 3555
Q ss_pred E
Q 041553 182 M 182 (315)
Q Consensus 182 ~ 182 (315)
.
T Consensus 93 ~ 93 (104)
T 4a18_G 93 L 93 (104)
T ss_dssp E
T ss_pred e
Confidence 4
No 27
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=23.35 E-value=82 Score=24.57 Aligned_cols=64 Identities=6% Similarity=0.066 Sum_probs=42.8
Q ss_pred EEEEehHHHHHHHhcCCcccccceeeeEEEeccCcC------ccccccccCCceEEe--CHHHHHhhcCCCCCcceeEEE
Q 041553 109 ALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE------VPEGLDNISTHTVRV--SSVVMKKLSGVQSSESIEAIA 180 (315)
Q Consensus 109 ~lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~------l~~~l~~~~~~v~~v--s~~~l~kLs~~~~~qGi~avA 180 (315)
-++.|.+.+..+++.+. .+-+++..+.. +.......+++++.+ +...|...++.. .++.++|
T Consensus 26 k~~~G~~~t~kai~~gk--------akLVilA~D~~~~~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~Gk~--~~v~~va 95 (112)
T 3iz5_f 26 KYTLGYKTVLKTLRSSL--------GKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVDLGTACGKY--YRVCCLS 95 (112)
T ss_dssp EEEESHHHHHHHHHTTC--------CSEEEECSCCCHHHHHHHHHHHHHTTCCEECCCCTTCTHHHHHCTT--CSSCEEE
T ss_pred CeeECHHHHHHHHHcCC--------ceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEeCCCHHHHHHHhCCc--cceEEEE
Confidence 38899999999999774 46677776542 222233467888866 677888888764 3333355
Q ss_pred EE
Q 041553 181 LM 182 (315)
Q Consensus 181 v~ 182 (315)
+.
T Consensus 96 I~ 97 (112)
T 3iz5_f 96 IL 97 (112)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 28
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=22.57 E-value=1.5e+02 Score=22.57 Aligned_cols=63 Identities=5% Similarity=0.002 Sum_probs=42.3
Q ss_pred EEEehHHHHHHHhcCCcccccceeeeEEEeccCcC------ccccccccCCceE-E-eCHHHHHhhcCCCCCcceeEEEE
Q 041553 110 LVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE------VPEGLDNISTHTV-R-VSSVVMKKLSGVQSSESIEAIAL 181 (315)
Q Consensus 110 lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~------l~~~l~~~~~~v~-~-vs~~~l~kLs~~~~~qGi~avAv 181 (315)
++.|.+.+..+++.+. ..-+++..+.. +.......+++++ + -+...|...++.... +.++|+
T Consensus 23 ~v~G~~~v~kai~~gk--------aklVilA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG~A~Gk~~~--~~~vaI 92 (105)
T 3u5e_c 23 YTLGYKSTVKSLRQGK--------SKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNELGTAVGKLFR--VGVVSI 92 (105)
T ss_dssp EEESHHHHHHHHHTTC--------CSEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHHHHHTTCSSC--CSEEEE
T ss_pred eeECHHHHHHHHHcCC--------ceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHHHHHHhCCccc--EEEEEE
Confidence 8999999999999874 55677776542 2222233578887 3 588899999887443 323555
Q ss_pred E
Q 041553 182 M 182 (315)
Q Consensus 182 ~ 182 (315)
.
T Consensus 93 ~ 93 (105)
T 3u5e_c 93 L 93 (105)
T ss_dssp E
T ss_pred e
Confidence 4
No 29
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=21.31 E-value=2.9e+02 Score=21.33 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=40.0
Q ss_pred EEEehHHHHHHHhcCCcccccceeeeEEEeccCcC-------ccccccccCCceEE-eCHHHHHhhcCCCCCcceeEEEE
Q 041553 110 LVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE-------VPEGLDNISTHTVR-VSSVVMKKLSGVQSSESIEAIAL 181 (315)
Q Consensus 110 lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~-------l~~~l~~~~~~v~~-vs~~~l~kLs~~~~~qGi~avAv 181 (315)
++.|.+.+..+++.+. ..-+++..+.. +.......+++++. -+...|...++...+-.+ +|+
T Consensus 30 l~~G~~~v~kal~~gk--------a~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~G~~~~~~~--vaI 99 (120)
T 1vq8_F 30 VKKGTNETTKSIERGS--------AELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAAGLEVGSAA--AAV 99 (120)
T ss_dssp EEESHHHHHHHHHHTC--------CSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHHHHTTCSSCCSE--EEE
T ss_pred EeECHHHHHHHHHcCC--------ceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCCCCeEE--EEE
Confidence 8889999999999774 45566665431 12222335677654 478889998887544333 454
No 30
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=21.04 E-value=2.9e+02 Score=21.42 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=41.2
Q ss_pred EEEEehHHHHHHHhcCCcccccceeeeEEEeccCcC-------ccccccccCCceEE-eCHHHHHhhcCCCCCcceeEEE
Q 041553 109 ALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE-------VPEGLDNISTHTVR-VSSVVMKKLSGVQSSESIEAIA 180 (315)
Q Consensus 109 ~lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~-------l~~~l~~~~~~v~~-vs~~~l~kLs~~~~~qGi~avA 180 (315)
-++.|.+.|..+++.+. ..-+++..+.. +.......+++++. -+...|...++...+-.+ +|
T Consensus 28 kl~~G~~~v~kal~~gk--------a~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG~a~G~~~~~~~--va 97 (124)
T 2fc3_A 28 RIKKGTNETTKAVERGL--------AKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGIEVAAAS--VA 97 (124)
T ss_dssp EEEESHHHHHHHHHTTC--------CSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHHHHTTCSSCCSE--EE
T ss_pred CccCCHHHHHHHHHcCC--------ceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCEEE--EE
Confidence 38899999999999774 45566665431 11222335677654 478889998887544443 55
Q ss_pred EE
Q 041553 181 LM 182 (315)
Q Consensus 181 v~ 182 (315)
+.
T Consensus 98 I~ 99 (124)
T 2fc3_A 98 II 99 (124)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 31
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=20.41 E-value=2.4e+02 Score=21.90 Aligned_cols=58 Identities=9% Similarity=0.094 Sum_probs=39.3
Q ss_pred EEEehHHHHHHHhcCCcccccceeeeEEEeccCcC-------ccccccccCCceEEe-CHHHHHhhcCCCCCcc
Q 041553 110 LVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE-------VPEGLDNISTHTVRV-SSVVMKKLSGVQSSES 175 (315)
Q Consensus 110 lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~-------l~~~l~~~~~~v~~v-s~~~l~kLs~~~~~qG 175 (315)
++.|.+.+..+++.+. ..-+++..+.. +..+....+++++.+ +...|.+..+...+-.
T Consensus 21 l~~G~~~v~kai~~gk--------akLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~g~k~~~s 86 (121)
T 2lbw_A 21 VKRGVKEVVKALRKGE--------KGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTS 86 (121)
T ss_dssp EEESHHHHHHHHHHSC--------CCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHHHHTCSSCCS
T ss_pred ccccHHHHHHHHHcCC--------ceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHHHhCCCCCEE
Confidence 8899999999998764 45667765531 223334468888655 6778888887655443
No 32
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=20.16 E-value=1.1e+02 Score=24.82 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=29.4
Q ss_pred HHHHHHHHhh-CCcEEEEEecCCCCCCCCCCHHHHHhcCcEEEccC
Q 041553 269 WYHLEVLKDE-FQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPL 313 (315)
Q Consensus 269 ~~~l~~~~~~-~g~~ivat~~~~G~E~~Gls~~~~~~cD~~v~IPm 313 (315)
+..+.+.+++ +|.+|++... .+..++.+.+.||.++.|.-
T Consensus 121 F~plv~~lr~~~G~~V~v~g~-----~~~~s~~L~~~ad~fi~l~~ 161 (165)
T 2qip_A 121 FSLLVERIQQRYNKKVTVYGV-----PRLTSQTLIDCADNFVAIDD 161 (165)
T ss_dssp GHHHHHHHHHHHCCEEEEEEC-----GGGSCHHHHHHSSEEEECSG
T ss_pred HHHHHHHHHHHcCcEEEEEeC-----CCcChHHHHHhCCEEEecch
Confidence 4455555677 4999887753 23578999999999998863
Done!