BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041554
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NPL|A Chain A, Mannose-Specific Agglutinin (Lectin) From Daffodil
(Narcissus Pseudonarcissus) Bulbs In Complex With
Mannose-Alpha1,3-Mannose
pdb|3DZW|A Chain A, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
pdb|3DZW|B Chain B, Structure Of Narcissus Pseudonarcissus Lectin Complex With
Mannobiose At 1.7 A Resolution, Form Ii
Length = 109
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 18/109 (16%)
Query: 24 AADTVTPASFIRDGEKLVSFSQRFELGFFSPGKSKSRYLGIWFRQVSDTVVWVANRDRPI 83
+ +T++P F+ +G + + L + D +W N
Sbjct: 6 SGETLSPGEFLNNGRYVFIMQEDCNLVLYD----------------VDKPIWATNTGG-- 47
Query: 84 SDHNAVLTVSNNGNLVLLNQKNGTIWSTNVFSEVKNPVAQLRDDGNLVI 132
D L++ ++GNLV+ + +N IW++N E N V L+ D N+VI
Sbjct: 48 LDRRCHLSMQSDGNLVVYSPRNNPIWASNTGGENGNYVCVLQKDRNVVI 96
>pdb|3A0C|A Chain A, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|B Chain B, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|C Chain C, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0C|D Chain D, Crystal Structure Of An Anti-Hiv Mannose-Binding Lectin
From Polygonatum Cyrtonema Hua
pdb|3A0D|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Monomannoside
pdb|3A0E|A Chain A, Crystal Structure Of Polygonatum Cyrtonema Lectin (Pcl)
Complexed With Dimannoside
Length = 110
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 90 LTVSNNGNLVLLNQKNGTIWSTNVFSEVKNPVAQLRDDGNLVI 132
LT+ NNGNLV+ +Q N IW T + + V L+ D N+VI
Sbjct: 55 LTLHNNGNLVIYDQSNRVIWQTKTNGKEDHYVLVLQQDRNVVI 97
>pdb|1KJ1|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 72 TVVWVANRDRPISDHNAVLTVSNNGNLVLLNQKNGTIWSTNVFSEVKNPVAQLRDDGNLV 131
T VW N D P + ++GN V+ + + ++W+++ N V L++DGN+V
Sbjct: 38 TAVWTTNTDIP-GKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVV 96
Query: 132 I--RDNSSANT 140
I D S NT
Sbjct: 97 IYGSDIWSTNT 107
>pdb|1BWU|Q Chain Q, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 72 TVVWVANRDRPISDHNAVLTVSNNGNLVLLNQKNGTIWSTNVFSEVKNPVAQLRDDGNLV 131
T VW +N D P + ++GN V+ + + ++W+++ N V L++DGN+V
Sbjct: 38 TAVWSSNTDIP-GKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNVV 96
Query: 132 I 132
I
Sbjct: 97 I 97
>pdb|1BWU|D Chain D, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 72 TVVWVANRDRPISDHNAVLTVSNNGNLVLLNQKNGTIWSTNVFSEVKNPVAQLRDDGNLV 131
T VW +N D P + ++GN V+ + + ++W+++ N V L++DGN+V
Sbjct: 38 TAVWSSNTDIP-GKKGCKAVLQSDGNFVVYDAEGASLWASHSVRGNGNYVLVLQEDGNVV 96
Query: 132 I 132
I
Sbjct: 97 I 97
>pdb|2D04|B Chain B, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|D Chain D, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|F Chain F, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|H Chain H, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity
Length = 114
Score = 32.7 bits (73), Expect = 0.37, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 74 VWVANRDRPISDHNAVLTVSNNGNLVLLNQKNGTIWSTNVFSEVKNPVAQLRDDGNLVI 132
+W +N DR S LT+ ++GNLV+ + N +W + + + L+ DG VI
Sbjct: 40 IWASNTDRRGS--GCRLTLLSDGNLVIYDHNNNDVWGSACWGDNGKYALVLQKDGRFVI 96
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 90 LTVSNNGNLVLLNQKNGTIWSTNVFSEVKNPVAQLRDDGNLVIRDNSSANTTESYLW 146
LT+ N NLV Q IW++N L DGNLVI D+++ + S W
Sbjct: 23 LTIQNKCNLVKY-QNGRQIWASNTDRRGSGCRLTLLSDGNLVIYDHNNNDVWGSACW 78
>pdb|1MSA|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|B Chain B, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1MSA|D Chain D, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs Complexed With Methyl-Alpha-D-
Mannoside
pdb|1NIV|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1NIV|C Chain C, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With Mannose-Alpha
1, 3-Methyl-D-Mannose
pdb|1JPC|A Chain A, Mannose-Specific Agglutinin (Lectin) From Snowdrop
(Galanthus Nivalis) Bulbs In Complex With
Mannose-Alpha1,6-(Mannose-Alpha1,3)-Mannose-
Alpha1,6-(Mannose-Alpha1,3)-Mannose
Length = 109
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 80 DRPISDHNA-------VLTVSNNGNLVLLNQKNGTIWSTNVFSEVKNPVAQLRDDGNLVI 132
D+PI N L++ +GNLV+ N N IW++N + N V L+ D N+VI
Sbjct: 37 DKPIWATNTGGLSRSCFLSMQTDGNLVVYNPSNKPIWASNTGGQNGNYVCILQKDRNVVI 96
>pdb|2DPF|A Chain A, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|B Chain B, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|C Chain C, Crystal Structure Of Curculin1 Homodimer
pdb|2DPF|D Chain D, Crystal Structure Of Curculin1 Homodimer
Length = 115
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 74 VWVANRDRPISDHNAVLTVSNNGNLVLLNQKNGTIWSTNVFSEVKNPVAQLRDDGNLVI 132
+W +N DR S LT+ ++GNLV+ + N +W + + + L+ DG VI
Sbjct: 41 IWASNTDRRGS--GCRLTLLSDGNLVIYDHNNNDVWGSACWGDNGKYALVLQKDGRFVI 97
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 132 IRDNSSANTTESYLWQSFDYPTD-TLLQDMKMGWDLKNRLERYLSSWQSDDDPSPGKFT 189
+R ++S L+Q+FD D + D K W ++ +ERY+ Q D PG +
Sbjct: 211 LRSQGYTGLSDSELYQAFDMTYDYDVFGDFKDYWQGRSTVERYVDLLQRQDATFPGNYV 269
>pdb|2D04|A Chain A, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|C Chain C, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|E Chain E, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity.
pdb|2D04|G Chain G, Crystal Structure Of Neoculin, A Sweet Protein With
Taste-Modifying Activity
Length = 113
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 81 RPISDHNAVLTVSNNGNLVLLNQKNGTIWSTNVFSEVKNPVAQLRDDGNLVIRDNSSANT 140
++ + LT+ NN NLV Q IW+++ + LR DGNL+I D+++
Sbjct: 14 HSLTSGSYTLTIQNNCNLVKY-QHGRQIWASDTDGQGSQCRLTLRSDGNLIIYDDNNMVV 72
Query: 141 TESYLWQSFDYPTDTLLQD 159
S W + L QD
Sbjct: 73 WGSDCWGNNGTYALVLQQD 91
>pdb|3UUW|A Chain A, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile.
pdb|3UUW|B Chain B, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile.
pdb|3UUW|C Chain C, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile.
pdb|3UUW|D Chain D, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile
Length = 308
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 66 FRQVSDTVVWVANRDRPISDHNAVLTVSNNGNLVLLNQK-NGTIWSTN 112
+ V DT +W+AN D IS + LT +N NL+ ++ K G +S N
Sbjct: 168 YIHVIDTALWLANEDVEISGEDLFLT--DNKNLIFVSHKLKGKNFSIN 213
>pdb|1XD5|A Chain A, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|B Chain B, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|C Chain C, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
pdb|1XD5|D Chain D, Crystal Structures Of Novel Monomeric Monocot Mannose-
Binding Lectins From Gastrodia Elata
Length = 112
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 89 VLTVSNNGNLVLLNQKNGTIWSTNVFSEVKNPVAQLRDDGNLVIRDNSS 137
VL + N+GNLV+ + IW++N + N L+ D N+VI DNS+
Sbjct: 53 VLKMQNDGNLVIYSGSR-AIWASNTNRQNGNYYLILQRDRNVVIYDNSN 100
>pdb|3R0E|A Chain A, Structure Of Remusatia Vivipara Lectin
pdb|3R0E|C Chain C, Structure Of Remusatia Vivipara Lectin
Length = 109
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 90 LTVSNNGNLVLLNQKNGTIWSTNVFSEVKNPVAQLRDDGNLVI 132
LT+++ G LV+ N T+W + S N A + DG LV+
Sbjct: 53 LTLTDYGELVIKNGDGSTVWKSGAQSVKGNYAAVVHPDGRLVV 95
>pdb|1R6Z|P Chain P, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|A Chain A, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
pdb|1R6Z|Z Chain Z, The Crystal Structure Of The Argonaute2 Paz Domain (as A
Mbp Fusion)
Length = 509
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 305 PDQKPVCECLEGFKLKSKVNQTGPIKCERSHSSECIRG 342
P P+ E LE F LK+K+N T + R +RG
Sbjct: 382 PISMPMIEYLERFSLKAKINNTTNLDYSRRFLEPFLRG 419
>pdb|1KJ1|A Chain A, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
pdb|1KJ1|P Chain P, Mannose-Specific Agglutinin (Lectin) From Garlic (Allium
Sativum) Bulbs Complexed With Alpha-D-Mannose
Length = 109
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 72 TVVWVANRDRPISDHNAVLTVSNNGNLVLLNQKNGTIWSTNVFSEVKNPVAQLRDDGNLV 131
T VW +N + + ++GN V+ + + ++W+++ N V L++DGN+V
Sbjct: 38 TSVWASNTG-ILGKKGCKAVLQSDGNFVVYDAEGRSLWASHSVRGNGNYVLVLQEDGNVV 96
Query: 132 I 132
I
Sbjct: 97 I 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,249,481
Number of Sequences: 62578
Number of extensions: 572846
Number of successful extensions: 1257
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1221
Number of HSP's gapped (non-prelim): 42
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)