Query 041554
Match_columns 435
No_of_seqs 201 out of 1382
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 08:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01453 B_lectin: D-mannose b 100.0 5E-30 1.1E-34 218.1 4.1 109 71-184 2-114 (114)
2 PF00954 S_locus_glycop: S-loc 99.9 1.1E-27 2.3E-32 202.7 10.7 109 210-321 1-110 (110)
3 cd00028 B_lectin Bulb-type man 99.9 2.2E-25 4.8E-30 190.3 15.3 115 32-152 2-116 (116)
4 smart00108 B_lectin Bulb-type 99.9 7E-24 1.5E-28 180.4 14.7 113 32-151 2-114 (114)
5 PF08276 PAN_2: PAN-like domai 99.7 1.6E-17 3.5E-22 127.3 6.0 65 339-403 1-65 (66)
6 cd00129 PAN_APPLE PAN/APPLE-li 99.5 2.8E-14 6.1E-19 113.2 6.5 70 339-420 5-80 (80)
7 cd01098 PAN_AP_plant Plant PAN 99.5 5.8E-14 1.3E-18 112.1 7.9 78 336-421 2-84 (84)
8 smart00108 B_lectin Bulb-type 98.8 1.7E-08 3.6E-13 85.8 9.6 88 89-213 23-112 (114)
9 cd00028 B_lectin Bulb-type man 98.7 5.1E-08 1.1E-12 83.0 9.2 88 90-214 24-114 (116)
10 smart00473 PAN_AP divergent su 98.5 3E-07 6.5E-12 71.6 7.6 70 343-419 4-77 (78)
11 PF01453 B_lectin: D-mannose b 98.5 1.3E-06 2.8E-11 74.2 11.8 100 38-153 12-114 (114)
12 cd01100 APPLE_Factor_XI_like S 97.5 0.00012 2.6E-09 56.9 4.4 51 347-400 8-58 (73)
13 PF00024 PAN_1: PAN domain Thi 93.7 0.07 1.5E-06 41.1 3.3 56 345-403 4-60 (79)
14 PF14295 PAN_4: PAN domain; PD 90.0 0.28 6.1E-06 34.5 2.6 24 364-387 15-38 (51)
15 smart00223 APPLE APPLE domain. 88.9 0.75 1.6E-05 36.3 4.4 50 349-399 7-57 (79)
16 PF08277 PAN_3: PAN-like domai 86.3 2 4.4E-05 32.5 5.5 32 363-398 18-49 (71)
17 smart00605 CW CW domain. 86.1 2.6 5.5E-05 34.2 6.3 53 363-422 20-76 (94)
18 PF07645 EGF_CA: Calcium-bindi 83.9 0.31 6.6E-06 33.5 -0.2 32 289-320 3-36 (42)
19 cd00053 EGF Epidermal growth f 83.0 0.88 1.9E-05 28.8 1.8 29 291-319 2-31 (36)
20 PRK11138 outer membrane biogen 78.9 41 0.00088 34.3 13.4 56 89-148 122-186 (394)
21 smart00179 EGF_CA Calcium-bind 78.8 1.5 3.3E-05 28.6 1.9 30 289-318 3-33 (39)
22 PF09064 Tme5_EGF_like: Thromb 78.3 1.2 2.7E-05 29.1 1.2 19 302-320 11-29 (34)
23 PF01683 EB: EB module; Inter 75.5 2.2 4.7E-05 30.5 2.0 33 286-321 17-49 (52)
24 cd01099 PAN_AP_HGF Subfamily o 74.5 7 0.00015 30.6 4.9 36 364-401 24-61 (80)
25 cd00054 EGF_CA Calcium-binding 73.3 2.7 5.9E-05 26.9 1.9 31 289-319 3-34 (38)
26 PF07974 EGF_2: EGF-like domai 72.1 3 6.4E-05 27.0 1.8 24 295-319 6-29 (32)
27 PF12661 hEGF: Human growth fa 69.3 1.1 2.3E-05 23.0 -0.6 9 310-318 1-9 (13)
28 KOG0291 WD40-repeat-containing 67.1 1.7E+02 0.0037 32.7 14.6 86 88-199 354-450 (893)
29 PF12662 cEGF: Complement Clr- 63.1 3.3 7.1E-05 25.0 0.6 12 310-321 3-14 (24)
30 PRK11138 outer membrane biogen 60.3 2E+02 0.0043 29.2 16.7 21 92-112 211-232 (394)
31 TIGR03300 assembly_YfgL outer 59.7 34 0.00074 34.5 7.8 21 94-114 73-94 (377)
32 PF13360 PQQ_2: PQQ-like domai 59.1 1.2E+02 0.0026 27.8 10.9 53 92-148 42-102 (238)
33 PF13360 PQQ_2: PQQ-like domai 58.4 23 0.00051 32.6 5.9 50 95-148 2-62 (238)
34 smart00181 EGF Epidermal growt 54.5 8.9 0.00019 24.4 1.6 24 295-319 6-30 (35)
35 PF12947 EGF_3: EGF domain; I 54.1 2.3 5E-05 28.3 -1.3 25 294-318 5-30 (36)
36 PF00008 EGF: EGF-like domain 52.3 3 6.6E-05 26.7 -0.9 23 296-318 5-29 (32)
37 TIGR03300 assembly_YfgL outer 52.1 2.6E+02 0.0056 28.0 19.4 62 82-147 101-170 (377)
38 PF01436 NHL: NHL repeat; Int 50.0 28 0.00061 21.4 3.3 21 89-109 6-26 (28)
39 KOG4649 PQQ (pyrrolo-quinoline 47.5 75 0.0016 31.1 7.2 45 71-115 169-218 (354)
40 PF14269 Arylsulfotran_2: Aryl 41.5 3.6E+02 0.0079 26.7 11.6 102 32-147 150-295 (299)
41 PF05735 TSP_C: Thrombospondin 40.8 1.2E+02 0.0026 28.4 7.3 18 47-67 54-71 (201)
42 PHA02887 EGF-like protein; Pro 40.3 28 0.0006 29.6 2.7 29 289-318 84-117 (126)
43 cd00216 PQQ_DH Dehydrogenases 40.0 86 0.0019 33.2 7.3 73 71-148 39-136 (488)
44 PF00954 S_locus_glycop: S-loc 37.8 99 0.0022 25.4 5.9 55 240-301 42-96 (110)
45 KOG4289 Cadherin EGF LAG seven 30.1 30 0.00065 41.1 1.8 42 294-335 1244-1286(2531)
46 cd05845 Ig2_L1-CAM_like Second 28.0 98 0.0021 25.2 4.1 30 71-101 34-63 (95)
47 PF05399 EVI2A: Ectropic viral 26.6 42 0.00092 31.4 1.9 17 1-17 128-144 (227)
48 PF01011 PQQ: PQQ enzyme repea 24.8 90 0.0019 20.4 2.8 23 93-115 7-30 (38)
49 TIGR02513 type_III_yscB type I 24.6 1.3E+02 0.0029 26.2 4.4 50 85-134 19-94 (139)
50 smart00564 PQQ beta-propeller 21.7 1.6E+02 0.0035 17.9 3.5 19 93-111 13-32 (33)
51 cd00216 PQQ_DH Dehydrogenases 21.3 2.1E+02 0.0045 30.3 6.2 49 88-136 407-457 (488)
52 PF13956 Ibs_toxin: Toxin Ibs, 20.6 58 0.0013 18.3 0.9 12 9-20 6-17 (19)
No 1
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=99.96 E-value=5e-30 Score=218.10 Aligned_cols=109 Identities=47% Similarity=0.761 Sum_probs=80.4
Q ss_pred CcEEEEcCCCCCCCCC--CcEEEEeeCCcEEEEeCCCceEEee-cccCCC-CCcEEEEecCCCEEEEeCCCCCCCcceEe
Q 041554 71 DTVVWVANRDRPISDH--NAVLTVSNNGNLVLLNQKNGTIWST-NVFSEV-KNPVAQLRDDGNLVIRDNSSANTTESYLW 146 (435)
Q Consensus 71 ~~~VW~Anr~~pv~~~--~~~l~l~~dG~Lvl~d~~~~~vWst-~~~~~~-~~~~~~L~d~GNLVl~~~~~~~~~~~~~W 146 (435)
+|+||+|||+.|+... ..+|.|+.||+|+|++..+..+|++ ++.+.. .+..|+|+|+|||||++.. +++||
T Consensus 2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~~-----~~~lW 76 (114)
T PF01453_consen 2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDSS-----GNVLW 76 (114)
T ss_dssp --------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEETT-----SEEEE
T ss_pred cccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEeec-----ceEEE
Confidence 6899999999999532 4789999999999999999999999 555433 4689999999999999965 58999
Q ss_pred eeccCCCccccCCceeeeeccCCCeeEEEEecCCCCCC
Q 041554 147 QSFDYPTDTLLQDMKMGWDLKNRLERYLSSWQSDDDPS 184 (435)
Q Consensus 147 qSFD~PTDTLLpgq~l~~~~~tg~~~~L~Sw~s~~dps 184 (435)
|||||||||+||||+|+.+..+|.+..|+||++.+|||
T Consensus 77 ~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 77 QSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp ESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred eecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 99999999999999999877777666799999999996
No 2
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=99.95 E-value=1.1e-27 Score=202.69 Aligned_cols=109 Identities=39% Similarity=0.815 Sum_probs=102.3
Q ss_pred EEecCCCCCcce-EEeeeccceeeEEEEEEeCCeEEEEEEecCCCcEEEEEEccCCcEEEEeecCCCCCcceEEEEeeeC
Q 041554 210 TCSGQWNDQAGF-VSAISYTNFLYKQFLVENQDEISYWYEPYNRPSIMTLKLNPSGLLTRQIWNENSNGWDWDVLFSFPD 288 (435)
Q Consensus 210 w~sg~w~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~L~~dG~lr~y~w~~~~~~~~W~~~~~~p~ 288 (435)
||+|+|+|..|+ +|+|. ....+.+.|+.+++|++++|...+.+.++|++|+.+|++++|.|.+..+. |.++|.+|.
T Consensus 1 wrsG~WnG~~f~g~p~~~-~~~~~~~~fv~~~~e~~~t~~~~~~s~~~r~~ld~~G~l~~~~w~~~~~~--W~~~~~~p~ 77 (110)
T PF00954_consen 1 WRSGPWNGQRFSGIPEMS-SNSLYNYSFVSNNEEVYYTYSLSNSSVLSRLVLDSDGQLQRYIWNESTQS--WSVFWSAPK 77 (110)
T ss_pred CCccccCCeEECCccccc-ccceeEEEEEECCCeEEEEEecCCCceEEEEEEeeeeEEEEEEEecCCCc--EEEEEEecc
Confidence 899999999999 99987 66788889999999999999998888999999999999999999988888 999999999
Q ss_pred CccccccCCCCCcccCCCCCCccccCCCCccCC
Q 041554 289 EYCGKYGYCGANTICSPDQKPVCECLEGFKLKS 321 (435)
Q Consensus 289 d~C~~~g~CG~~GiC~~~~~~~C~C~~GF~p~~ 321 (435)
|+|++|+.||+||+|+.+..+.|+||+||+|++
T Consensus 78 d~Cd~y~~CG~~g~C~~~~~~~C~Cl~GF~P~n 110 (110)
T PF00954_consen 78 DQCDVYGFCGPNGICNSNNSPKCSCLPGFEPKN 110 (110)
T ss_pred cCCCCccccCCccEeCCCCCCceECCCCcCCCc
Confidence 999999999999999887788999999999974
No 3
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=99.93 E-value=2.2e-25 Score=190.27 Aligned_cols=115 Identities=43% Similarity=0.710 Sum_probs=99.4
Q ss_pred CcccCCCeEEecCCeEEEEEeCCCCCCceEEEEEEecCCCcEEEEcCCCCCCCCCCcEEEEeeCCcEEEEeCCCceEEee
Q 041554 32 SFIRDGEKLVSFSQRFELGFFSPGKSKSRYLGIWFRQVSDTVVWVANRDRPISDHNAVLTVSNNGNLVLLNQKNGTIWST 111 (435)
Q Consensus 32 ~~l~~~~~L~S~~g~F~lgF~~~~~~~~~yl~iw~~~~~~~~VW~Anr~~pv~~~~~~l~l~~dG~Lvl~d~~~~~vWst 111 (435)
+.|..|++|+|+++.|++|||.+......+++|||...+.++||.||++.|. ...+.|.|+.||+|+|+|.+|.++|++
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~q~~dgnlv~~~~~~~~~vW~snt~~~~-~~~~~l~l~~dGnLvl~~~~g~~vW~S 80 (116)
T cd00028 2 NPLSSGQTLVSSGSLFELGFFKLIMQSRDYNLILYKGSSRTVVWVANRDNPS-GSSCTLTLQSDGNLVIYDGSGTVVWSS 80 (116)
T ss_pred cCcCCCCEEEeCCCcEEEecccCCCCCCeEEEEEEeCCCCeEEEECCCCCCC-CCCEEEEEecCCCeEEEcCCCcEEEEe
Confidence 4678899999999999999999865433889999987556899999999884 356789999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCEEEEeCCCCCCCcceEeeeccCC
Q 041554 112 NVFSEVKNPVAQLRDDGNLVIRDNSSANTTESYLWQSFDYP 152 (435)
Q Consensus 112 ~~~~~~~~~~~~L~d~GNLVl~~~~~~~~~~~~~WqSFD~P 152 (435)
++.+.....+|+|+|+|||||++.+ +++||||||||
T Consensus 81 ~~~~~~~~~~~~L~ddGnlvl~~~~-----~~~~W~Sf~~P 116 (116)
T cd00028 81 NTTRVNGNYVLVLLDDGNLVLYDSD-----GNFLWQSFDYP 116 (116)
T ss_pred cccCCCCceEEEEeCCCCEEEECCC-----CCEEEcCCCCC
Confidence 9875234578999999999999976 58999999999
No 4
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=99.91 E-value=7e-24 Score=180.44 Aligned_cols=113 Identities=47% Similarity=0.764 Sum_probs=97.6
Q ss_pred CcccCCCeEEecCCeEEEEEeCCCCCCceEEEEEEecCCCcEEEEcCCCCCCCCCCcEEEEeeCCcEEEEeCCCceEEee
Q 041554 32 SFIRDGEKLVSFSQRFELGFFSPGKSKSRYLGIWFRQVSDTVVWVANRDRPISDHNAVLTVSNNGNLVLLNQKNGTIWST 111 (435)
Q Consensus 32 ~~l~~~~~L~S~~g~F~lgF~~~~~~~~~yl~iw~~~~~~~~VW~Anr~~pv~~~~~~l~l~~dG~Lvl~d~~~~~vWst 111 (435)
+.|..|++|+|+++.|++|||.+.. ...+++|||...+.++||+|||+.|+.. ++.|.|++||+|+|+|.+|.++|++
T Consensus 2 ~~l~~~~~l~s~~~~f~~G~~~~~~-q~dgnlV~~~~~~~~~vW~snt~~~~~~-~~~l~l~~dGnLvl~~~~g~~vW~S 79 (114)
T smart00108 2 NTLSSGQTLVSGNSLFELGFFTLIM-QNDYNLILYKSSSRTVVWVANRDNPVSD-SCTLTLQSDGNLVLYDGDGRVVWSS 79 (114)
T ss_pred cccCCCCEEecCCCcEeeeccccCC-CCCEEEEEEECCCCcEEEECCCCCCCCC-CEEEEEeCCCCEEEEeCCCCEEEEe
Confidence 4578899999999999999998864 3578899998754689999999999764 4889999999999999999999999
Q ss_pred cccCCCCCcEEEEecCCCEEEEeCCCCCCCcceEeeeccC
Q 041554 112 NVFSEVKNPVAQLRDDGNLVIRDNSSANTTESYLWQSFDY 151 (435)
Q Consensus 112 ~~~~~~~~~~~~L~d~GNLVl~~~~~~~~~~~~~WqSFD~ 151 (435)
++.......+|+|+|+|||||++.. +++|||||||
T Consensus 80 ~t~~~~~~~~~~L~ddGnlvl~~~~-----~~~~W~Sf~~ 114 (114)
T smart00108 80 NTTGANGNYVLVLLDDGNLVIYDSD-----GNFLWQSFDY 114 (114)
T ss_pred cccCCCCceEEEEeCCCCEEEECCC-----CCEEeCCCCC
Confidence 9873334578999999999999876 5899999997
No 5
>PF08276 PAN_2: PAN-like domain; InterPro: IPR013227 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs
Probab=99.70 E-value=1.6e-17 Score=127.33 Aligned_cols=65 Identities=49% Similarity=1.119 Sum_probs=56.0
Q ss_pred cccCceEEEecCCCCCCCcccccccccCHHHHHHHHhcCCceEEEEeccCCCCcceEeecCCcCC
Q 041554 339 CIRGEQFIKLDNIRAPDFIEVSLNQSMNLQQCAAECLKNCSCRAYANSNVTEGSGCLMWFGDLLD 403 (435)
Q Consensus 339 C~~~d~f~~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~~~~~~~g~gC~lw~~~l~~ 403 (435)
|+.+|+|+++++|++|++....++.++++++|+++||+||||+||+|.+..++++|++|+++|+|
T Consensus 1 C~~~d~F~~l~~~~~p~~~~~~~~~~~s~~~C~~~Cl~nCsC~Ayay~~~~~~~~C~lW~~~L~d 65 (66)
T PF08276_consen 1 CGSGDGFLKLPNMKLPDFDNAIVDSSVSLEECEKACLSNCSCTAYAYSNLSGGGGCLLWYGDLVD 65 (66)
T ss_pred CcCCCEEEEECCeeCCCCcceeeecCCCHHHHHhhcCCCCCEeeEEeeccCCCCEEEEEcCEeec
Confidence 54478999999999999876655566899999999999999999999854345679999999998
No 6
>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins. Common structural features include two disulfide bonds that link the alpha-helix to the central region of the protein. PAN domains have significant functional versatility, fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=99.51 E-value=2.8e-14 Score=113.22 Aligned_cols=70 Identities=19% Similarity=0.298 Sum_probs=60.1
Q ss_pred cccCceEEEecCCCCCCCcccccccccCHHHHHHHHhc---CCceEEEEeccCCCCcceEeecCCc-CCCCCCceee--c
Q 041554 339 CIRGEQFIKLDNIRAPDFIEVSLNQSMNLQQCAAECLK---NCSCRAYANSNVTEGSGCLMWFGDL-LDASWPRRNF--T 412 (435)
Q Consensus 339 C~~~d~f~~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~---nCsC~a~~~~~~~~g~gC~lw~~~l-~~~~~~~~~~--~ 412 (435)
|..+++|+++.++++|++.. .++++|+++|++ ||||+||+|.+. +.||++|+++| +| ++.. .
T Consensus 5 ~~~~g~fl~~~~~klpd~~~------~s~~eC~~~Cl~~~~nCsC~Aya~~~~--~~gC~~W~~~l~~d----~~~~~~~ 72 (80)
T cd00129 5 CKSAGTTLIKIALKIKTTKA------NTADECANRCEKNGLPFSCKAFVFAKA--RKQCLWFPFNSMSG----VRKEFSH 72 (80)
T ss_pred eecCCeEEEeecccCCcccc------cCHHHHHHHHhcCCCCCCceeeeccCC--CCCeEEecCcchhh----HHhccCC
Confidence 44467899999999998764 589999999999 999999999753 45799999999 99 8877 6
Q ss_pred CceEEEEE
Q 041554 413 GQSVYLRV 420 (435)
Q Consensus 413 ~~~~yirv 420 (435)
+.++|||.
T Consensus 73 g~~Ly~r~ 80 (80)
T cd00129 73 GFDLYENK 80 (80)
T ss_pred CceeEeEC
Confidence 88999983
No 7
>cd01098 PAN_AP_plant Plant PAN/APPLE-like domain; present in plant S-receptor protein kinases and secreted glycoproteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions. S-receptor protein kinases and S-locus glycoproteins are involved in sporophytic self-incompatibility response in Brassica, one of probably many molecular mechanisms, by which hermaphrodite flowering plants avoid self-fertilization.
Probab=99.50 E-value=5.8e-14 Score=112.11 Aligned_cols=78 Identities=37% Similarity=0.828 Sum_probs=63.3
Q ss_pred CcccccC---ceEEEecCCCCCCCcccccccccCHHHHHHHHhcCCceEEEEeccCCCCcceEeecCCcCCCCCCceee-
Q 041554 336 SSECIRG---EQFIKLDNIRAPDFIEVSLNQSMNLQQCAAECLKNCSCRAYANSNVTEGSGCLMWFGDLLDASWPRRNF- 411 (435)
Q Consensus 336 ~l~C~~~---d~f~~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~~~~~~~g~gC~lw~~~l~~~~~~~~~~- 411 (435)
+++|.+. ++|+++.++++|+..+.. ...++++|++.||+||+|+||+|.+ ++.+|++|..++.+ .+..
T Consensus 2 ~~~C~~~~~~~~f~~~~~~~~~~~~~~~--~~~s~~~C~~~Cl~nCsC~a~~~~~--~~~~C~~~~~~~~~----~~~~~ 73 (84)
T cd01098 2 PLNCGGDGSTDGFLKLPDVKLPDNASAI--TAISLEECREACLSNCSCTAYAYNN--GSGGCLLWNGLLNN----LRSLS 73 (84)
T ss_pred CcccCCCCCCCEEEEeCCeeCCCchhhh--ccCCHHHHHHHHhcCCCcceeeecC--CCCeEEEEeceecc----eEeec
Confidence 4567543 689999999999876542 5679999999999999999999974 24469999999988 6665
Q ss_pred -cCceEEEEEe
Q 041554 412 -TGQSVYLRVP 421 (435)
Q Consensus 412 -~~~~~yirv~ 421 (435)
.+.++||||+
T Consensus 74 ~~~~~~yiKv~ 84 (84)
T cd01098 74 SGGGTLYLRLA 84 (84)
T ss_pred CCCcEEEEEeC
Confidence 4689999985
No 8
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=98.85 E-value=1.7e-08 Score=85.76 Aligned_cols=88 Identities=23% Similarity=0.277 Sum_probs=64.5
Q ss_pred EEEEeeCCcEEEEeCC-CceEEeecccCCC-CCcEEEEecCCCEEEEeCCCCCCCcceEeeeccCCCccccCCceeeeec
Q 041554 89 VLTVSNNGNLVLLNQK-NGTIWSTNVFSEV-KNPVAQLRDDGNLVIRDNSSANTTESYLWQSFDYPTDTLLQDMKMGWDL 166 (435)
Q Consensus 89 ~l~l~~dG~Lvl~d~~-~~~vWst~~~~~~-~~~~~~L~d~GNLVl~~~~~~~~~~~~~WqSFD~PTDTLLpgq~l~~~~ 166 (435)
.+.++.||+||+++.. +.++|++++.... ....+.|+++|||||++.+ +.++|+|=
T Consensus 23 ~~~~q~dgnlV~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~-----g~~vW~S~----------------- 80 (114)
T smart00108 23 TLIMQNDYNLILYKSSSRTVVWVANRDNPVSDSCTLTLQSDGNLVLYDGD-----GRVVWSSN----------------- 80 (114)
T ss_pred ccCCCCCEEEEEEECCCCcEEEECCCCCCCCCCEEEEEeCCCCEEEEeCC-----CCEEEEec-----------------
Confidence 4566789999999865 5899999986432 2367899999999999876 47899881
Q ss_pred cCCCeeEEEEecCCCCCCCceeEEeeeccceeEEEEecCCeeeEEec
Q 041554 167 KNRLERYLSSWQSDDDPSPGKFTSRLEIQVLTKMCTFNGSVKFTCSG 213 (435)
Q Consensus 167 ~tg~~~~L~Sw~s~~dps~G~fsl~l~~~g~~~l~~~~~~~~yw~sg 213 (435)
+....+.+.+.|+.+|+.+++- ...++.|.+.
T Consensus 81 --------------t~~~~~~~~~~L~ddGnlvl~~-~~~~~~W~Sf 112 (114)
T smart00108 81 --------------TTGANGNYVLVLLDDGNLVIYD-SDGNFLWQSF 112 (114)
T ss_pred --------------ccCCCCceEEEEeCCCCEEEEC-CCCCEEeCCC
Confidence 0113567889999999876542 2346788763
No 9
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=98.74 E-value=5.1e-08 Score=83.03 Aligned_cols=88 Identities=23% Similarity=0.238 Sum_probs=64.6
Q ss_pred EEEee-CCcEEEEeCC-CceEEeecccCC-CCCcEEEEecCCCEEEEeCCCCCCCcceEeeeccCCCccccCCceeeeec
Q 041554 90 LTVSN-NGNLVLLNQK-NGTIWSTNVFSE-VKNPVAQLRDDGNLVIRDNSSANTTESYLWQSFDYPTDTLLQDMKMGWDL 166 (435)
Q Consensus 90 l~l~~-dG~Lvl~d~~-~~~vWst~~~~~-~~~~~~~L~d~GNLVl~~~~~~~~~~~~~WqSFD~PTDTLLpgq~l~~~~ 166 (435)
+.++. ||+||+++.. +.++|++++... .....+.|+++|||||++.+ +.++|+|=-
T Consensus 24 ~~~q~~dgnlv~~~~~~~~~vW~snt~~~~~~~~~l~l~~dGnLvl~~~~-----g~~vW~S~~---------------- 82 (116)
T cd00028 24 LIMQSRDYNLILYKGSSRTVVWVANRDNPSGSSCTLTLQSDGNLVIYDGS-----GTVVWSSNT---------------- 82 (116)
T ss_pred CCCCCCeEEEEEEeCCCCeEEEECCCCCCCCCCEEEEEecCCCeEEEcCC-----CcEEEEecc----------------
Confidence 45666 9999999765 579999998652 23567899999999999876 478998821
Q ss_pred cCCCeeEEEEecCCCCCCCceeEEeeeccceeEEEEecCCeeeEEecC
Q 041554 167 KNRLERYLSSWQSDDDPSPGKFTSRLEIQVLTKMCTFNGSVKFTCSGQ 214 (435)
Q Consensus 167 ~tg~~~~L~Sw~s~~dps~G~fsl~l~~~g~~~l~~~~~~~~yw~sg~ 214 (435)
....+.+.+.|+.+|+.+++-. ...+.|.+..
T Consensus 83 ---------------~~~~~~~~~~L~ddGnlvl~~~-~~~~~W~Sf~ 114 (116)
T cd00028 83 ---------------TRVNGNYVLVLLDDGNLVLYDS-DGNFLWQSFD 114 (116)
T ss_pred ---------------cCCCCceEEEEeCCCCEEEECC-CCCEEEcCCC
Confidence 0125678899999998665422 3467888753
No 10
>smart00473 PAN_AP divergent subfamily of APPLE domains. Apple-like domains present in Plasminogen, C. elegans hypothetical ORFs and the extracellular portion of plant receptor-like protein kinases. Predicted to possess protein- and/or carbohydrate-binding functions.
Probab=98.54 E-value=3e-07 Score=71.61 Aligned_cols=70 Identities=37% Similarity=0.850 Sum_probs=53.3
Q ss_pred ceEEEecCCCCCCCcccccccccCHHHHHHHHhc-CCceEEEEeccCCCCcceEeec-CCcCCCCCCceee--cCceEEE
Q 041554 343 EQFIKLDNIRAPDFIEVSLNQSMNLQQCAAECLK-NCSCRAYANSNVTEGSGCLMWF-GDLLDASWPRRNF--TGQSVYL 418 (435)
Q Consensus 343 d~f~~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~-nCsC~a~~~~~~~~g~gC~lw~-~~l~~~~~~~~~~--~~~~~yi 418 (435)
..|.+++++.+++..... ....++++|++.|++ +|+|.||.|.+ .+.+|.+|. +.+.+ .+.. .+.++|.
T Consensus 4 ~~f~~~~~~~l~~~~~~~-~~~~s~~~C~~~C~~~~~~C~s~~y~~--~~~~C~l~~~~~~~~----~~~~~~~~~~~y~ 76 (78)
T smart00473 4 DCFVRLPNTKLPGFSRIV-ISVASLEECASKCLNSNCSCRSFTYNN--GTKGCLLWSESSLGD----ARLFPSGGVDLYE 76 (78)
T ss_pred ceeEEecCccCCCCccee-EcCCCHHHHHHHhCCCCCceEEEEEcC--CCCEEEEeeCCcccc----ceecccCCceeEE
Confidence 569999999998655432 345689999999999 99999999964 244599999 77777 5432 4566776
Q ss_pred E
Q 041554 419 R 419 (435)
Q Consensus 419 r 419 (435)
|
T Consensus 77 ~ 77 (78)
T smart00473 77 K 77 (78)
T ss_pred e
Confidence 6
No 11
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=98.53 E-value=1.3e-06 Score=74.24 Aligned_cols=100 Identities=24% Similarity=0.435 Sum_probs=68.1
Q ss_pred CeEEecCCeEEEEEeCCCCCCceEEEEEEecCCCcEEEEc-CCCCCCCCCCcEEEEeeCCcEEEEeCCCceEEeecccCC
Q 041554 38 EKLVSFSQRFELGFFSPGKSKSRYLGIWFRQVSDTVVWVA-NRDRPISDHNAVLTVSNNGNLVLLNQKNGTIWSTNVFSE 116 (435)
Q Consensus 38 ~~L~S~~g~F~lgF~~~~~~~~~yl~iw~~~~~~~~VW~A-nr~~pv~~~~~~l~l~~dG~Lvl~d~~~~~vWst~~~~~ 116 (435)
+.+.+.+|.+.|-|+.+++ |.|.... .+++|.. +...... ..+.+.|++||||||+|..+.++|++....
T Consensus 12 ~p~~~~s~~~~L~l~~dGn-----Lvl~~~~--~~~iWss~~t~~~~~-~~~~~~L~~~GNlvl~d~~~~~lW~Sf~~p- 82 (114)
T PF01453_consen 12 SPLTSSSGNYTLILQSDGN-----LVLYDSN--GSVIWSSNNTSGRGN-SGCYLVLQDDGNLVLYDSSGNVLWQSFDYP- 82 (114)
T ss_dssp EEEEECETTEEEEEETTSE-----EEEEETT--TEEEEE--S-TTSS--SSEEEEEETTSEEEEEETTSEEEEESTTSS-
T ss_pred cccccccccccceECCCCe-----EEEEcCC--CCEEEEecccCCccc-cCeEEEEeCCCCEEEEeecceEEEeecCCC-
Confidence 4565655999999998775 4444322 5789999 5454432 357899999999999999999999984332
Q ss_pred CCCcEEEEec--CCCEEEEeCCCCCCCcceEeeeccCCC
Q 041554 117 VKNPVAQLRD--DGNLVIRDNSSANTTESYLWQSFDYPT 153 (435)
Q Consensus 117 ~~~~~~~L~d--~GNLVl~~~~~~~~~~~~~WqSFD~PT 153 (435)
....+.+++ +||++ +... ..+.|.|=+.|+
T Consensus 83 -tdt~L~~q~l~~~~~~-~~~~-----~~~sw~s~~dps 114 (114)
T PF01453_consen 83 -TDTLLPGQKLGDGNVT-GKND-----SLTSWSSNTDPS 114 (114)
T ss_dssp -S-EEEEEET--TSEEE-EEST-----SSEEEESS----
T ss_pred -ccEEEeccCcccCCCc-cccc-----eEEeECCCCCCC
Confidence 246678888 89998 6543 368998866663
No 12
>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=97.52 E-value=0.00012 Score=56.90 Aligned_cols=51 Identities=16% Similarity=0.289 Sum_probs=36.4
Q ss_pred EecCCCCCCCcccccccccCHHHHHHHHhcCCceEEEEeccCCCCcceEeecCC
Q 041554 347 KLDNIRAPDFIEVSLNQSMNLQQCAAECLKNCSCRAYANSNVTEGSGCLMWFGD 400 (435)
Q Consensus 347 ~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~~~~~~~g~gC~lw~~~ 400 (435)
.++++.++..+.... ...+.++|++.|+.+|+|.||.|... ...|+++...
T Consensus 8 ~~~~~~~~g~d~~~~-~~~s~~~Cq~~C~~~~~C~afT~~~~--~~~C~lk~~~ 58 (73)
T cd01100 8 QGSNVDFRGGDLSTV-FASSAEQCQAACTADPGCLAFTYNTK--SKKCFLKSSE 58 (73)
T ss_pred ccCCCccccCCccee-ecCCHHHHHHHcCCCCCceEEEEECC--CCeEEcccCC
Confidence 335666666544322 24689999999999999999999732 2349987664
No 13
>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs It has been shown that, the N-terminal N domains of members of the plasminogen/hepatocyte growth factor family, the apple domains of the plasma prekallikrein/coagulation factor XI family, and domains of various nematode proteins belong to the same module superfamily, the PAN module []. PAN contains a conserved core of three disulphide bridges. In some members of the family there is an additional fourth disulphide bridge that links the N and C termini of the domain.; PDB: 1GP9_C 2QJ2_B 1GMO_H 1NK1_B 3MKP_B 1BHT_B 3HN4_A 1GMN_A 3HMS_A 3HMT_B ....
Probab=93.67 E-value=0.07 Score=41.11 Aligned_cols=56 Identities=18% Similarity=0.395 Sum_probs=39.6
Q ss_pred EEEecCCCCCCCcccccccccCHHHHHHHHhcCCc-eEEEEeccCCCCcceEeecCCcCC
Q 041554 345 FIKLDNIRAPDFIEVSLNQSMNLQQCAAECLKNCS-CRAYANSNVTEGSGCLMWFGDLLD 403 (435)
Q Consensus 345 f~~l~~v~~p~~~~~~~~~~~~~~~C~~~Cl~nCs-C~a~~~~~~~~g~gC~lw~~~l~~ 403 (435)
|.++++..+........ ...++++|.+.|+.+=. |.+|.|... ...|.|...+...
T Consensus 4 f~~~~~~~l~~~~~~~~-~v~s~~~C~~~C~~~~~~C~s~~y~~~--~~~C~L~~~~~~~ 60 (79)
T PF00024_consen 4 FERIPGYRLSGHSIKEI-NVPSLEECAQLCLNEPRRCKSFNYDPS--SKTCYLSSSDRSS 60 (79)
T ss_dssp EEEEEEEEEESCEEEEE-EESSHHHHHHHHHHSTT-ESEEEEETT--TTEEEEECSSSSS
T ss_pred eEEECCEEEeCCcceEE-cCCCHHHHHhhcCcCcccCCeEEEECC--CCEEEEcCCCCCc
Confidence 67777776665433323 33489999999999999 999999732 2349987665443
No 14
>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.
Probab=90.01 E-value=0.28 Score=34.48 Aligned_cols=24 Identities=21% Similarity=0.595 Sum_probs=17.8
Q ss_pred ccCHHHHHHHHhcCCceEEEEecc
Q 041554 364 SMNLQQCAAECLKNCSCRAYANSN 387 (435)
Q Consensus 364 ~~~~~~C~~~Cl~nCsC~a~~~~~ 387 (435)
..+.++|.+.|..+=.|.+|.|..
T Consensus 15 ~~s~~~C~~~C~~~~~C~~~~~~~ 38 (51)
T PF14295_consen 15 ASSPEECQAACAADPGCQAFTFNP 38 (51)
T ss_dssp ---HHHHHHHHHTSTT--EEEEET
T ss_pred CCCHHHHHHHccCCCCCCEEEEEC
Confidence 458999999999999999999974
No 15
>smart00223 APPLE APPLE domain. Four-fold repeat in plasma kallikrein and coagulation factor XI. Factor XI apple 3 mediates binding to platelets. Factor XI apple 1 binds high-molecular-mass kininogen. Apple 4 in factor XI mediates dimer formation and binds to factor XIIa. Mutations in apple 4 cause factor XI deficiency, an inherited bleeding disorder.
Probab=88.86 E-value=0.75 Score=36.35 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=36.0
Q ss_pred cCCCCCCCcccccccccCHHHHHHHHhcCCceEEEEeccCCC-CcceEeecC
Q 041554 349 DNIRAPDFIEVSLNQSMNLQQCAAECLKNCSCRAYANSNVTE-GSGCLMWFG 399 (435)
Q Consensus 349 ~~v~~p~~~~~~~~~~~~~~~C~~~Cl~nCsC~a~~~~~~~~-g~gC~lw~~ 399 (435)
++++++..+...+ ...+.++|++.|..+=.|.+|.|..... ...|+|+..
T Consensus 7 ~~~df~G~Dl~~~-~~~~~~~Cq~~Ct~~~~C~~FTf~~~~~~~~~C~LK~s 57 (79)
T smart00223 7 KNVDFRGSDINTV-YVPSAQVCQKRCTSHPRCLFFTFSTNEPPEEKCLLKDS 57 (79)
T ss_pred cCccccCceeeee-ecCCHHHHHHhhcCCCCccEEEeeCCCCCCCEeEeCcC
Confidence 4666766655433 3468999999999999999999975421 125998754
No 16
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=86.29 E-value=2 Score=32.51 Aligned_cols=32 Identities=13% Similarity=0.455 Sum_probs=26.2
Q ss_pred cccCHHHHHHHHhcCCceEEEEeccCCCCcceEeec
Q 041554 363 QSMNLQQCAAECLKNCSCRAYANSNVTEGSGCLMWF 398 (435)
Q Consensus 363 ~~~~~~~C~~~Cl~nCsC~a~~~~~~~~g~gC~lw~ 398 (435)
...+.++|-+.|..+=.|.++.+. ..+|.++.
T Consensus 18 ~~~sw~~Cv~~C~~~~~C~la~~~----~~~C~~y~ 49 (71)
T PF08277_consen 18 TNTSWDDCVQKCYNDENCVLAYFD----SGKCYLYN 49 (71)
T ss_pred cCCCHHHHhHHhCCCCEEEEEEeC----CCCEEEEE
Confidence 456899999999999999999884 33599753
No 17
>smart00605 CW CW domain.
Probab=86.13 E-value=2.6 Score=34.16 Aligned_cols=53 Identities=17% Similarity=0.569 Sum_probs=36.5
Q ss_pred cccCHHHHHHHHhcCCceEEEEeccCCCCcceEeec-CCcCCCCCCceee---cCceEEEEEeC
Q 041554 363 QSMNLQQCAAECLKNCSCRAYANSNVTEGSGCLMWF-GDLLDASWPRRNF---TGQSVYLRVPA 422 (435)
Q Consensus 363 ~~~~~~~C~~~Cl~nCsC~a~~~~~~~~g~gC~lw~-~~l~~~~~~~~~~---~~~~~yirv~~ 422 (435)
...+.++|...|..+..|+.+... ....|.++. +++.. +++. .+..+=+|+..
T Consensus 20 ~~~sw~~Ci~~C~~~~~Cvlay~~---~~~~C~~f~~~~~~~----v~~~~~~~~~~VAfK~~~ 76 (94)
T smart00605 20 ATLSWDECIQKCYEDSNCVLAYGN---SSETCYLFSYGTVLT----VKKLSSSSGKKVAFKVST 76 (94)
T ss_pred cCCCHHHHHHHHhCCCceEEEecC---CCCceEEEEcCCeEE----EEEccCCCCcEEEEEEeC
Confidence 346899999999999999987653 224598653 34444 5554 35567777754
No 18
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=83.91 E-value=0.31 Score=33.47 Aligned_cols=32 Identities=25% Similarity=0.635 Sum_probs=24.8
Q ss_pred Ccccccc-CCCCCcccCCC-CCCccccCCCCccC
Q 041554 289 EYCGKYG-YCGANTICSPD-QKPVCECLEGFKLK 320 (435)
Q Consensus 289 d~C~~~g-~CG~~GiC~~~-~~~~C~C~~GF~p~ 320 (435)
|+|.... .|..++.|... ++-.|.|++||+..
T Consensus 3 dEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~ 36 (42)
T PF07645_consen 3 DECAEGPHNCPENGTCVNTEGSYSCSCPPGYELN 36 (42)
T ss_dssp STTTTTSSSSSTTSEEEEETTEEEEEESTTEEEC
T ss_pred cccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEEC
Confidence 6788744 79999999643 45679999999944
No 19
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=83.00 E-value=0.88 Score=28.80 Aligned_cols=29 Identities=21% Similarity=0.536 Sum_probs=21.4
Q ss_pred cccccCCCCCcccCCC-CCCccccCCCCcc
Q 041554 291 CGKYGYCGANTICSPD-QKPVCECLEGFKL 319 (435)
Q Consensus 291 C~~~g~CG~~GiC~~~-~~~~C~C~~GF~p 319 (435)
|.....|..++.|... +...|.|++||..
T Consensus 2 C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 2 CAASNPCSNGGTCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred CCCCCCCCCCCEEecCCCCeEeECCCCCcc
Confidence 4435678888999754 3577999999964
No 20
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=78.90 E-value=41 Score=34.35 Aligned_cols=56 Identities=23% Similarity=0.382 Sum_probs=36.2
Q ss_pred EEEE-eeCCcEEEEeC-CCceEEeecccCCC--C-----CcEEEEecCCCEEEEeCCCCCCCcceEeee
Q 041554 89 VLTV-SNNGNLVLLNQ-KNGTIWSTNVFSEV--K-----NPVAQLRDDGNLVIRDNSSANTTESYLWQS 148 (435)
Q Consensus 89 ~l~l-~~dG~Lvl~d~-~~~~vWst~~~~~~--~-----~~~~~L~d~GNLVl~~~~~~~~~~~~~WqS 148 (435)
.+.+ +.+|.|+-.|. +|+++|+....+.. . ..+.....+|.|+-.|..+ ++++|+-
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~t----G~~~W~~ 186 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESD----GAVKWTV 186 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccC----CCEeeee
Confidence 3444 45788888886 69999998765321 1 1122334567788888765 7899975
No 21
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=78.82 E-value=1.5 Score=28.61 Aligned_cols=30 Identities=23% Similarity=0.595 Sum_probs=22.5
Q ss_pred CccccccCCCCCcccCCC-CCCccccCCCCc
Q 041554 289 EYCGKYGYCGANTICSPD-QKPVCECLEGFK 318 (435)
Q Consensus 289 d~C~~~g~CG~~GiC~~~-~~~~C~C~~GF~ 318 (435)
+.|.....|...+.|... +...|.|++||.
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence 567665678888899654 345699999997
No 22
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=78.28 E-value=1.2 Score=29.08 Aligned_cols=19 Identities=37% Similarity=0.859 Sum_probs=14.3
Q ss_pred ccCCCCCCccccCCCCccC
Q 041554 302 ICSPDQKPVCECLEGFKLK 320 (435)
Q Consensus 302 iC~~~~~~~C~C~~GF~p~ 320 (435)
.|+.+...+|.||+||...
T Consensus 11 ~CDpn~~~~C~CPeGyIld 29 (34)
T PF09064_consen 11 DCDPNSPGQCFCPEGYILD 29 (34)
T ss_pred ccCCCCCCceeCCCceEec
Confidence 5655556789999999754
No 23
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=75.54 E-value=2.2 Score=30.51 Aligned_cols=33 Identities=24% Similarity=0.610 Sum_probs=27.0
Q ss_pred eeCCccccccCCCCCcccCCCCCCccccCCCCccCC
Q 041554 286 FPDEYCGKYGYCGANTICSPDQKPVCECLEGFKLKS 321 (435)
Q Consensus 286 ~p~d~C~~~g~CG~~GiC~~~~~~~C~C~~GF~p~~ 321 (435)
.|.+.|....-|-.+++|. ...|.|++||.+..
T Consensus 17 ~~g~~C~~~~qC~~~s~C~---~g~C~C~~g~~~~~ 49 (52)
T PF01683_consen 17 QPGESCESDEQCIGGSVCV---NGRCQCPPGYVEVG 49 (52)
T ss_pred CCCCCCCCcCCCCCcCEEc---CCEeECCCCCEecC
Confidence 3567899999999999995 35899999998763
No 24
>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins. PAN/APPLE domains fulfill diverse biological functions by mediating protein-protein or protein-carbohydrate interactions.
Probab=74.47 E-value=7 Score=30.60 Aligned_cols=36 Identities=22% Similarity=0.602 Sum_probs=28.0
Q ss_pred ccCHHHHHHHHhc--CCceEEEEeccCCCCcceEeecCCc
Q 041554 364 SMNLQQCAAECLK--NCSCRAYANSNVTEGSGCLMWFGDL 401 (435)
Q Consensus 364 ~~~~~~C~~~Cl~--nCsC~a~~~~~~~~g~gC~lw~~~l 401 (435)
..++++|.++|++ +=.|.+|.|... ...|.|-..+.
T Consensus 24 ~~s~~~C~~~C~~~~~f~CrSf~y~~~--~~~C~L~~~~~ 61 (80)
T cd01099 24 VASLEECLRKCLEETEFTCRSFNYNYK--SKECILSDEDR 61 (80)
T ss_pred cCCHHHHHHHhCCCCCceEeEEEEEcC--CCEEEEeCCCc
Confidence 4789999999999 999999999642 23499855544
No 25
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=73.27 E-value=2.7 Score=26.90 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=22.0
Q ss_pred CccccccCCCCCcccCCC-CCCccccCCCCcc
Q 041554 289 EYCGKYGYCGANTICSPD-QKPVCECLEGFKL 319 (435)
Q Consensus 289 d~C~~~g~CG~~GiC~~~-~~~~C~C~~GF~p 319 (435)
+.|.....|...+.|... ....|.|++||.-
T Consensus 3 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g 34 (38)
T cd00054 3 DECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34 (38)
T ss_pred ccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence 467654578888899653 3456999999853
No 26
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=72.05 E-value=3 Score=27.00 Aligned_cols=24 Identities=21% Similarity=0.558 Sum_probs=18.9
Q ss_pred cCCCCCcccCCCCCCccccCCCCcc
Q 041554 295 GYCGANTICSPDQKPVCECLEGFKL 319 (435)
Q Consensus 295 g~CG~~GiC~~~~~~~C~C~~GF~p 319 (435)
..|...|.|... ..+|.|.+||.-
T Consensus 6 ~~C~~~G~C~~~-~g~C~C~~g~~G 29 (32)
T PF07974_consen 6 NICSGHGTCVSP-CGRCVCDSGYTG 29 (32)
T ss_pred CccCCCCEEeCC-CCEEECCCCCcC
Confidence 479999999743 468999999863
No 27
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=69.34 E-value=1.1 Score=23.00 Aligned_cols=9 Identities=33% Similarity=1.191 Sum_probs=6.6
Q ss_pred ccccCCCCc
Q 041554 310 VCECLEGFK 318 (435)
Q Consensus 310 ~C~C~~GF~ 318 (435)
.|.|++||.
T Consensus 1 ~C~C~~G~~ 9 (13)
T PF12661_consen 1 TCQCPPGWT 9 (13)
T ss_dssp EEEE-TTEE
T ss_pred CccCcCCCc
Confidence 489999986
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=67.13 E-value=1.7e+02 Score=32.70 Aligned_cols=86 Identities=19% Similarity=0.336 Sum_probs=55.5
Q ss_pred cEEEEeeCCcEEEEeC-CCce-EEeeccc--------CCCCCcEEEEecCCCEEEEeCCCCCCCcceEeeeccCCCcccc
Q 041554 88 AVLTVSNNGNLVLLNQ-KNGT-IWSTNVF--------SEVKNPVAQLRDDGNLVIRDNSSANTTESYLWQSFDYPTDTLL 157 (435)
Q Consensus 88 ~~l~l~~dG~Lvl~d~-~~~~-vWst~~~--------~~~~~~~~~L~d~GNLVl~~~~~~~~~~~~~WqSFD~PTDTLL 157 (435)
..+....||.++.+.. +|++ ||.+... .++.++..+..-+||.+|...-++ ..-.|
T Consensus 354 ~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDG---tVRAw----------- 419 (893)
T KOG0291|consen 354 TSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG---TVRAW----------- 419 (893)
T ss_pred eeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCC---eEEee-----------
Confidence 4688999999998865 5665 8988752 123456678899999999765431 22344
Q ss_pred CCceeeeeccCCCeeEEEEecCCCCCCCceeE-EeeeccceeE
Q 041554 158 QDMKMGWDLKNRLERYLSSWQSDDDPSPGKFT-SRLEIQVLTK 199 (435)
Q Consensus 158 pgq~l~~~~~tg~~~~L~Sw~s~~dps~G~fs-l~l~~~g~~~ 199 (435)
|++.+ ...|+-+-|.+-.|+ +.+|+.|..+
T Consensus 420 -------DlkRY-----rNfRTft~P~p~QfscvavD~sGelV 450 (893)
T KOG0291|consen 420 -------DLKRY-----RNFRTFTSPEPIQFSCVAVDPSGELV 450 (893)
T ss_pred -------eeccc-----ceeeeecCCCceeeeEEEEcCCCCEE
Confidence 33323 223344567777776 6777877543
No 29
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=63.13 E-value=3.3 Score=25.03 Aligned_cols=12 Identities=33% Similarity=1.057 Sum_probs=10.0
Q ss_pred ccccCCCCccCC
Q 041554 310 VCECLEGFKLKS 321 (435)
Q Consensus 310 ~C~C~~GF~p~~ 321 (435)
.|+|++||+...
T Consensus 3 ~C~C~~Gy~l~~ 14 (24)
T PF12662_consen 3 TCSCPPGYQLSP 14 (24)
T ss_pred EeeCCCCCcCCC
Confidence 599999999753
No 30
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=60.33 E-value=2e+02 Score=29.22 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=13.1
Q ss_pred EeeCCcEEEEeC-CCceEEeec
Q 041554 92 VSNNGNLVLLNQ-KNGTIWSTN 112 (435)
Q Consensus 92 l~~dG~Lvl~d~-~~~~vWst~ 112 (435)
-+.+|.++..|. +|+.+|+..
T Consensus 211 ~~~~g~v~a~d~~~G~~~W~~~ 232 (394)
T PRK11138 211 GGDNGRVSAVLMEQGQLIWQQR 232 (394)
T ss_pred EcCCCEEEEEEccCChhhheec
Confidence 345666665554 577888754
No 31
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=59.70 E-value=34 Score=34.49 Aligned_cols=21 Identities=19% Similarity=0.578 Sum_probs=12.7
Q ss_pred eCCcEEEEe-CCCceEEeeccc
Q 041554 94 NNGNLVLLN-QKNGTIWSTNVF 114 (435)
Q Consensus 94 ~dG~Lvl~d-~~~~~vWst~~~ 114 (435)
.+|.|.-.| .+|+++|+....
T Consensus 73 ~~g~v~a~d~~tG~~~W~~~~~ 94 (377)
T TIGR03300 73 ADGTVVALDAETGKRLWRVDLD 94 (377)
T ss_pred CCCeEEEEEccCCcEeeeecCC
Confidence 446666666 467777765543
No 32
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=59.10 E-value=1.2e+02 Score=27.77 Aligned_cols=53 Identities=25% Similarity=0.431 Sum_probs=34.8
Q ss_pred EeeCCcEEEEeC-CCceEEeecccCCCC-------CcEEEEecCCCEEEEeCCCCCCCcceEeee
Q 041554 92 VSNNGNLVLLNQ-KNGTIWSTNVFSEVK-------NPVAQLRDDGNLVIRDNSSANTTESYLWQS 148 (435)
Q Consensus 92 l~~dG~Lvl~d~-~~~~vWst~~~~~~~-------~~~~~L~d~GNLVl~~~~~~~~~~~~~WqS 148 (435)
.+.+|.|+.+|. +|+.+|+........ ........+|.|+..|..+ ++++|+.
T Consensus 42 ~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~t----G~~~W~~ 102 (238)
T PF13360_consen 42 ASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKT----GKVLWSI 102 (238)
T ss_dssp EETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTT----SCEEEEE
T ss_pred EcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCC----cceeeee
Confidence 358899999996 899999988643211 1122333455566677444 7899995
No 33
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=58.45 E-value=23 Score=32.65 Aligned_cols=50 Identities=28% Similarity=0.512 Sum_probs=31.6
Q ss_pred CCcEEEEeC-CCceEEeecccCCCCCc----------EEEEecCCCEEEEeCCCCCCCcceEeee
Q 041554 95 NGNLVLLNQ-KNGTIWSTNVFSEVKNP----------VAQLRDDGNLVIRDNSSANTTESYLWQS 148 (435)
Q Consensus 95 dG~Lvl~d~-~~~~vWst~~~~~~~~~----------~~~L~d~GNLVl~~~~~~~~~~~~~WqS 148 (435)
+|.|...|. +|+.+|+.......... ......+|+|+..|..+ ++++|+-
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~t----G~~~W~~ 62 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKT----GKVLWRF 62 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTT----SEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCC----CCEEEEe
Confidence 678888887 89999998652111111 11224677777777644 6889965
No 34
>smart00181 EGF Epidermal growth factor-like domain.
Probab=54.49 E-value=8.9 Score=24.37 Aligned_cols=24 Identities=25% Similarity=0.660 Sum_probs=17.3
Q ss_pred cCCCCCcccCCC-CCCccccCCCCcc
Q 041554 295 GYCGANTICSPD-QKPVCECLEGFKL 319 (435)
Q Consensus 295 g~CG~~GiC~~~-~~~~C~C~~GF~p 319 (435)
..|... .|... +...|.|++||.-
T Consensus 6 ~~C~~~-~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNG-TCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCC-EEECCCCCeEeECCCCCcc
Confidence 457666 78644 4577999999964
No 35
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=54.12 E-value=2.3 Score=28.28 Aligned_cols=25 Identities=28% Similarity=0.756 Sum_probs=17.0
Q ss_pred ccCCCCCcccCCC-CCCccccCCCCc
Q 041554 294 YGYCGANTICSPD-QKPVCECLEGFK 318 (435)
Q Consensus 294 ~g~CG~~GiC~~~-~~~~C~C~~GF~ 318 (435)
.+-|.++..|... .+-.|.|.+||.
T Consensus 5 ~~~C~~nA~C~~~~~~~~C~C~~Gy~ 30 (36)
T PF12947_consen 5 NGGCHPNATCTNTGGSYTCTCKPGYE 30 (36)
T ss_dssp GGGS-TTCEEEE-TTSEEEEE-CEEE
T ss_pred CCCCCCCcEeecCCCCEEeECCCCCc
Confidence 4568889999654 356799999996
No 36
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=52.34 E-value=3 Score=26.74 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=17.4
Q ss_pred CCCCCcccCCC--CCCccccCCCCc
Q 041554 296 YCGANTICSPD--QKPVCECLEGFK 318 (435)
Q Consensus 296 ~CG~~GiC~~~--~~~~C~C~~GF~ 318 (435)
.|...|.|... ....|.|++||.
T Consensus 5 ~C~n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 5 PCQNGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp SSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred cCCCCeEEEeCCCCCEEeECCCCCc
Confidence 67778888543 346799999985
No 37
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=52.08 E-value=2.6e+02 Score=28.00 Aligned_cols=62 Identities=24% Similarity=0.442 Sum_probs=30.7
Q ss_pred CCCCCCcEEEEeeCCcEEEEeC-CCceEEeecccCCC-------CCcEEEEecCCCEEEEeCCCCCCCcceEee
Q 041554 82 PISDHNAVLTVSNNGNLVLLNQ-KNGTIWSTNVFSEV-------KNPVAQLRDDGNLVIRDNSSANTTESYLWQ 147 (435)
Q Consensus 82 pv~~~~~~l~l~~dG~Lvl~d~-~~~~vWst~~~~~~-------~~~~~~L~d~GNLVl~~~~~~~~~~~~~Wq 147 (435)
|+.+..-.+.-+.+|.|+..|. +|+++|+....+.. ...+..-..+|.|+..|..+ ++++|+
T Consensus 101 p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~t----G~~~W~ 170 (377)
T TIGR03300 101 VGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAAT----GERLWT 170 (377)
T ss_pred eEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCC----CceeeE
Confidence 4444444555555666666664 66666665432210 01112223456666666543 456665
No 38
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=50.04 E-value=28 Score=21.37 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=15.9
Q ss_pred EEEEeeCCcEEEEeCCCceEE
Q 041554 89 VLTVSNNGNLVLLNQKNGTIW 109 (435)
Q Consensus 89 ~l~l~~dG~Lvl~d~~~~~vW 109 (435)
-+.+..+|++++.|..+..||
T Consensus 6 gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 6 GVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEETTSEEEEEECCCTEEE
T ss_pred EEEEeCCCCEEEEECCCCEEE
Confidence 377778888888887776665
No 39
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.48 E-value=75 Score=31.14 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=33.3
Q ss_pred CcEEEEcCCCCCCCCC-----CcEEEEeeCCcEEEEeCCCceEEeecccC
Q 041554 71 DTVVWVANRDRPISDH-----NAVLTVSNNGNLVLLNQKNGTIWSTNVFS 115 (435)
Q Consensus 71 ~~~VW~Anr~~pv~~~-----~~~l~l~~dG~Lvl~d~~~~~vWst~~~~ 115 (435)
.+..|.|.|..|+-.+ +.+..=+-||+|.-.|+.|+.||.-.+.+
T Consensus 169 ~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l~~f~~sG~qvwr~~t~G 218 (354)
T KOG4649|consen 169 STEFWAATRFGPIFASPLCVGSSVIITTVDGVLTSFDESGRQVWRPATKG 218 (354)
T ss_pred cceehhhhcCCccccCceeccceEEEEEeccEEEEEcCCCcEEEeecCCC
Confidence 5889999999998644 12333356899988899999999766553
No 40
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=41.53 E-value=3.6e+02 Score=26.65 Aligned_cols=102 Identities=18% Similarity=0.284 Sum_probs=0.0
Q ss_pred CcccCCCeEEecCCeEEEEEeCCCCCCceEEEEEEecCCCcEEEEcCCC--------------------CCCCCCCcEEE
Q 041554 32 SFIRDGEKLVSFSQRFELGFFSPGKSKSRYLGIWFRQVSDTVVWVANRD--------------------RPISDHNAVLT 91 (435)
Q Consensus 32 ~~l~~~~~L~S~~g~F~lgF~~~~~~~~~yl~iw~~~~~~~~VW~Anr~--------------------~pv~~~~~~l~ 91 (435)
+....|+.|+|..-.-++....+.+ ..|+|..+.. .+-.+....+.
T Consensus 150 ~~~~~G~yLiS~R~~~~i~~I~~~t--------------G~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~Is 215 (299)
T PF14269_consen 150 DKDDDGDYLISSRNTSTIYKIDPST--------------GKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTIS 215 (299)
T ss_pred eecCCccEEEEecccCEEEEEECCC--------------CcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEE
Q ss_pred EeeC------------CcEEEEeCCCceEEeecccC-------CCCCcEEEEecCCCEEEEeCCCC-----CCCcceEee
Q 041554 92 VSNN------------GNLVLLNQKNGTIWSTNVFS-------EVKNPVAQLRDDGNLVIRDNSSA-----NTTESYLWQ 147 (435)
Q Consensus 92 l~~d------------G~Lvl~d~~~~~vWst~~~~-------~~~~~~~~L~d~GNLVl~~~~~~-----~~~~~~~Wq 147 (435)
|-.+ |.++-+|.....++-..... ....-.+++|.+||..|-..... +..+++||+
T Consensus 216 lFDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~~G~vv~~ 295 (299)
T PF14269_consen 216 LFDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTPDGEVVWE 295 (299)
T ss_pred EEcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCCceEEEECCCCCEEEE
No 41
>PF05735 TSP_C: Thrombospondin C-terminal region; InterPro: IPR008859 Thrombospondins are multimeric multidomain glycoproteins that function at cell surfaces and in the extracellular matrix milieu. They act as regulators of cell interactions in vertebrates. They are divided into two subfamilies, A and B, according to their overall molecular organisation. The subgroup A proteins TSP-1 and -2 contain an N-terminal domain, a VWFC domain, three TSP1 repeats, three EGF-like domains, TSP3 repeats and a C-terminal domain. They are assembled as trimer. The subgroup B thrombospondins, designated TSP-3, -4, and COMP (cartilage oligomeric matrix protein, also designated TSP-5) are distinct in that they contain unique N-terminal regions, lack the VWFC domain and TSP1 repeats, contain four copies of EGF-like domains, and are assembled as pentamers []. EGF, TSP3 repeats and the C-terminal domain are thus the hallmark of a thrombospondin. The globular C-terminal domain is a beta sandwich of two curved antiparallel beta-sheets []. The fold is an elaboration of the jelly role topology, with strand B3-B7, B11 and B14-B15 forming the eight-stranded jelly roll motif. The function of the C-terminal domain is not yet known.; GO: 0005509 calcium ion binding, 0007155 cell adhesion, 0005576 extracellular region; PDB: 1UX6_A 1YO8_A 2RHP_A 3FBY_C.
Probab=40.76 E-value=1.2e+02 Score=28.43 Aligned_cols=18 Identities=28% Similarity=0.743 Sum_probs=12.6
Q ss_pred EEEEEeCCCCCCceEEEEEEe
Q 041554 47 FELGFFSPGKSKSRYLGIWFR 67 (435)
Q Consensus 47 F~lgF~~~~~~~~~yl~iw~~ 67 (435)
|.||+++ +.+||+..|-+
T Consensus 54 FVFGYQs---n~~FYvv~WKq 71 (201)
T PF05735_consen 54 FVFGYQS---NRKFYVVMWKQ 71 (201)
T ss_dssp EEEEEEE---TTEEEEEEEES
T ss_pred EEEEecC---CCeEEEEEeec
Confidence 6788875 45688877765
No 42
>PHA02887 EGF-like protein; Provisional
Probab=40.33 E-value=28 Score=29.58 Aligned_cols=29 Identities=28% Similarity=0.699 Sum_probs=21.8
Q ss_pred Ccccc--ccCCCCCcccCCC---CCCccccCCCCc
Q 041554 289 EYCGK--YGYCGANTICSPD---QKPVCECLEGFK 318 (435)
Q Consensus 289 d~C~~--~g~CG~~GiC~~~---~~~~C~C~~GF~ 318 (435)
++|.- -++|= +|.|.+- +.+.|.|++||.
T Consensus 84 ~pC~~eyk~YCi-HG~C~yI~dL~epsCrC~~GYt 117 (126)
T PHA02887 84 EKCKNDFNDFCI-NGECMNIIDLDEKFCICNKGYT 117 (126)
T ss_pred cccChHhhCEee-CCEEEccccCCCceeECCCCcc
Confidence 57854 56787 7899663 458899999985
No 43
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=40.01 E-value=86 Score=33.22 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=43.6
Q ss_pred CcEEEEcCCC-------CCCCCCCcEEE-EeeCCcEEEEeC-CCceEEeecccCC--------C-------C-CcEEEEe
Q 041554 71 DTVVWVANRD-------RPISDHNAVLT-VSNNGNLVLLNQ-KNGTIWSTNVFSE--------V-------K-NPVAQLR 125 (435)
Q Consensus 71 ~~~VW~Anr~-------~pv~~~~~~l~-l~~dG~Lvl~d~-~~~~vWst~~~~~--------~-------~-~~~~~L~ 125 (435)
.+++|..+-. .|+.. .+++. .+.+|.|+-+|. .|+++|+...... . . ..+..-.
T Consensus 39 ~~~~W~~~~~~~~~~~~sPvv~-~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~ 117 (488)
T cd00216 39 LKVAWTFSTGDERGQEGTPLVV-DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGT 117 (488)
T ss_pred ceeeEEEECCCCCCcccCCEEE-CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEec
Confidence 4567876543 34432 23444 445799988886 6899999764321 0 0 1111223
Q ss_pred cCCCEEEEeCCCCCCCcceEeee
Q 041554 126 DDGNLVIRDNSSANTTESYLWQS 148 (435)
Q Consensus 126 d~GNLVl~~~~~~~~~~~~~WqS 148 (435)
.+|.++-.|..+ ++.+|+-
T Consensus 118 ~~g~v~AlD~~T----G~~~W~~ 136 (488)
T cd00216 118 FDGRLVALDAET----GKQVWKF 136 (488)
T ss_pred CCCeEEEEECCC----CCEeeee
Confidence 467777787765 7899983
No 44
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=37.80 E-value=99 Score=25.45 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=33.1
Q ss_pred CCeEEEEEEecCCCcEEEEEEccCCcEEEEeecCCCCCcceEEEEeeeCCccccccCCCCCc
Q 041554 240 QDEISYWYEPYNRPSIMTLKLNPSGLLTRQIWNENSNGWDWDVLFSFPDEYCGKYGYCGANT 301 (435)
Q Consensus 240 ~~~~~~~~~~~~~~~~~rl~L~~dG~lr~y~w~~~~~~~~W~~~~~~p~d~C~~~g~CG~~G 301 (435)
+..+..++.+.....+++++.+.+.+-....|...... ...+ ..|..+++|-.+.
T Consensus 42 ~~s~~~r~~ld~~G~l~~~~w~~~~~~W~~~~~~p~d~--Cd~y-----~~CG~~g~C~~~~ 96 (110)
T PF00954_consen 42 NSSVLSRLVLDSDGQLQRYIWNESTQSWSVFWSAPKDQ--CDVY-----GFCGPNGICNSNN 96 (110)
T ss_pred CCceEEEEEEeeeeEEEEEEEecCCCcEEEEEEecccC--CCCc-----cccCCccEeCCCC
Confidence 33333444444445677888776666666666544443 4332 4799999997653
No 45
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=30.09 E-value=30 Score=41.14 Aligned_cols=42 Identities=26% Similarity=0.466 Sum_probs=28.9
Q ss_pred ccCCCCCcccCCC-CCCccccCCCCccCCCCCCCCCCccccCC
Q 041554 294 YGYCGANTICSPD-QKPVCECLEGFKLKSKVNQTGPIKCERSH 335 (435)
Q Consensus 294 ~g~CG~~GiC~~~-~~~~C~C~~GF~p~~~~~~~~s~GC~r~~ 335 (435)
-+.||++|-|..- +..+|.|-|||.-.+=+-.-.++-|++..
T Consensus 1244 s~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvpGv 1286 (2531)
T KOG4289|consen 1244 SGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVPGV 1286 (2531)
T ss_pred cCCCCCCCceEEecCceeEEecCCccccceeeecccCccccce
Confidence 6789999999653 55789999999754321133456676654
No 46
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=27.99 E-value=98 Score=25.18 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=18.8
Q ss_pred CcEEEEcCCCCCCCCCCcEEEEeeCCcEEEE
Q 041554 71 DTVVWVANRDRPISDHNAVLTVSNNGNLVLL 101 (435)
Q Consensus 71 ~~~VW~Anr~~pv~~~~~~l~l~~dG~Lvl~ 101 (435)
.++.|+-+....+. ....+.++.+|+|.+.
T Consensus 34 P~i~W~~~~~~~i~-~~~Ri~~~~~GnL~fs 63 (95)
T cd05845 34 LRIYWMNSDLLHIT-QDERVSMGQNGNLYFA 63 (95)
T ss_pred CEEEEECCCCcccc-ccccEEECCCceEEEE
Confidence 66778844433343 2456777777888774
No 47
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=26.57 E-value=42 Score=31.45 Aligned_cols=17 Identities=41% Similarity=0.727 Sum_probs=12.9
Q ss_pred CCccchHHHHHHHHHHH
Q 041554 1 MAILPCFSIFCSLILLL 17 (435)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (435)
|||+.|+.|+-+|+|+|
T Consensus 128 ~amLIClIIIAVLfLIC 144 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLIC 144 (227)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 78888988877776655
No 48
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=24.80 E-value=90 Score=20.41 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=18.0
Q ss_pred eeCCcEEEEeC-CCceEEeecccC
Q 041554 93 SNNGNLVLLNQ-KNGTIWSTNVFS 115 (435)
Q Consensus 93 ~~dG~Lvl~d~-~~~~vWst~~~~ 115 (435)
+.+|.|+-+|. .|+.+|+.++..
T Consensus 7 ~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 7 TPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp TTTSEEEEEETTTTSEEEEEESSS
T ss_pred CCCCEEEEEECCCCCEEEeeeCCC
Confidence 56788888886 689999987653
No 49
>TIGR02513 type_III_yscB type III secretion system chaperone, YscB family. Members of this family include YscB of Yersinia and functionally equivalent (but differently named) proteins from type III secretion systems of other pathogens that affect animal cells. YscB acts, along with SycN (TIGR02503), as a chaperone for YopN, a key part of a complex that regulates type III secretion so it responds to contact with the eukaryotic target cell.
Probab=24.61 E-value=1.3e+02 Score=26.16 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=32.7
Q ss_pred CCCcEEEEeeCCcEEEEeC-CCceEEeecccC-------------------------CCCCcEEEEecCCCEEEEe
Q 041554 85 DHNAVLTVSNNGNLVLLNQ-KNGTIWSTNVFS-------------------------EVKNPVAQLRDDGNLVIRD 134 (435)
Q Consensus 85 ~~~~~l~l~~dG~Lvl~d~-~~~~vWst~~~~-------------------------~~~~~~~~L~d~GNLVl~~ 134 (435)
+..|.-.|.-||-++..-+ .+..+|+|.-.. .....+++|.|+|||+|..
T Consensus 19 d~qG~Yhl~iD~~~l~l~q~~sellletpL~~~~~~~~d~q~~~lLk~lmQq~l~w~R~~p~aLvld~~~qLiLea 94 (139)
T TIGR02513 19 DRQGVYHLTIDQHLVMLAQHGSELVLETPLDARMLRPGDNQNVTLLRSLMQQVLAWARRYPQALVLDADGQLILEA 94 (139)
T ss_pred CCCCceEEEEcCcEEEeeccCceEEEeccccchhhCccccccHHHHHHHHHHHHHHHhcCCceEEEcCccchhHHH
Confidence 4456666667876665555 455789987521 0123467999999999964
No 50
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=21.70 E-value=1.6e+02 Score=17.91 Aligned_cols=19 Identities=26% Similarity=0.622 Sum_probs=11.3
Q ss_pred eeCCcEEEEeC-CCceEEee
Q 041554 93 SNNGNLVLLNQ-KNGTIWST 111 (435)
Q Consensus 93 ~~dG~Lvl~d~-~~~~vWst 111 (435)
+.+|.|+-.|. +|..+|+.
T Consensus 13 ~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 13 STDGTLYALDAKTGEILWTY 32 (33)
T ss_pred cCCCEEEEEEcccCcEEEEc
Confidence 33566666665 56677753
No 51
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=21.26 E-value=2.1e+02 Score=30.30 Aligned_cols=49 Identities=8% Similarity=0.183 Sum_probs=30.8
Q ss_pred cEEEE-eeCCcEEEEeC-CCceEEeecccCCCCCcEEEEecCCCEEEEeCC
Q 041554 88 AVLTV-SNNGNLVLLNQ-KNGTIWSTNVFSEVKNPVAQLRDDGNLVIRDNS 136 (435)
Q Consensus 88 ~~l~l-~~dG~Lvl~d~-~~~~vWst~~~~~~~~~~~~L~d~GNLVl~~~~ 136 (435)
..|.+ +.||.|..+|. +|+++|+.+..+....+-+....+|.+++....
T Consensus 407 ~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~~ 457 (488)
T cd00216 407 NLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVMV 457 (488)
T ss_pred CeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEEe
Confidence 34444 57899988886 689999988653321111233446888776544
No 52
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=20.61 E-value=58 Score=18.26 Aligned_cols=12 Identities=33% Similarity=0.586 Sum_probs=4.9
Q ss_pred HHHHHHHHHhhh
Q 041554 9 IFCSLILLLSMK 20 (435)
Q Consensus 9 ~~~~~~~~~~~~ 20 (435)
|++++||+++++
T Consensus 6 IIlvvLLliSf~ 17 (19)
T PF13956_consen 6 IILVVLLLISFP 17 (19)
T ss_pred HHHHHHHhcccc
Confidence 333444443443
Done!