BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041556
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 62/122 (50%), Gaps = 28/122 (22%)
Query: 26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
NP+R GWL K G +KTW+RRWFIL L++F+ T PRG+IP+ L++R
Sbjct: 212 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREV 266
Query: 86 EDLLNKPFAFELST---------------------GEYTMYFV-ADTEKEKEEWINSIGR 123
ED KP FEL G + +Y + A + +EKEEW+ SI
Sbjct: 267 ED-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKA 325
Query: 124 AI 125
+I
Sbjct: 326 SI 327
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 62/122 (50%), Gaps = 28/122 (22%)
Query: 26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
NP+R GWL K G +KTW+RRWFIL L++F+ T PRG+IP+ L++R
Sbjct: 2 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREV 56
Query: 86 EDLLNKPFAFELST---------------------GEYTMYFV-ADTEKEKEEWINSIGR 123
ED KP FEL G + +Y + A + +EKEEW+ SI
Sbjct: 57 ED-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKA 115
Query: 124 AI 125
+I
Sbjct: 116 SI 117
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 61/122 (50%), Gaps = 28/122 (22%)
Query: 26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
NP+R GWL K G +KTW+RRWFIL L++F+ T PRG+IP+ L++R
Sbjct: 212 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREV 266
Query: 86 EDLLNKPFAFELST---------------------GEYTMYFV-ADTEKEKEEWINSIGR 123
ED KP FEL G + +Y + A + +EKEEW SI
Sbjct: 267 ED-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSIKA 325
Query: 124 AI 125
+I
Sbjct: 326 SI 327
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 61/122 (50%), Gaps = 28/122 (22%)
Query: 26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
NP+R GWL K G +KTW+RRWFIL L++F+ T PRG+IP+ L++R
Sbjct: 2 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREV 56
Query: 86 EDLLNKPFAFELST---------------------GEYTMYFV-ADTEKEKEEWINSIGR 123
ED KP FEL G + +Y + A + +EKEEW SI
Sbjct: 57 ED-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSIKA 115
Query: 124 AI 125
+I
Sbjct: 116 SI 117
>pdb|1FGY|A Chain A, Grp1 Ph Domain With Ins(1,3,4,5)p4
pdb|1FGZ|A Chain A, Grp1 Ph Domain (Unliganded)
Length = 127
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 28/122 (22%)
Query: 26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA 85
NP+R GWL K G +KTW+RRWFIL L++F+ T PRG+IP+ L++R
Sbjct: 4 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIREV 58
Query: 86 EDLLNKPFAFELST---------------------GEYTMYFV-ADTEKEKEEWINSIGR 123
D KP FEL G + +Y + A + +EKEEW SI
Sbjct: 59 LD-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWXKSIKA 117
Query: 124 AI 125
+I
Sbjct: 118 SI 119
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain
Unliganded
Length = 138
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 29/123 (23%)
Query: 26 NPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
NP+R GWL K G +KTW+RRWFIL L++F+ T PRG+IP+ L++R
Sbjct: 14 NPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIRE 68
Query: 85 AEDLLNKPFAFELST---------------------GEYTMYFV-ADTEKEKEEWINSIG 122
ED KP FEL G + +Y + A + +EKEEW+ SI
Sbjct: 69 VED-PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIK 127
Query: 123 RAI 125
+I
Sbjct: 128 ASI 130
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 29/123 (23%)
Query: 26 NPERSGWLTKQGD-YIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
+P+R GWL K G +KTW+RRWFIL L++F+ T PRG+IP+ L++R
Sbjct: 10 SPDREGWLLKLGGGRVKTWKRRWFILTDNCLYYFE----YTTDKEPRGIIPLEN-LSIRE 64
Query: 85 AEDLLNKPFAFELST---------------------GEYTMYFV-ADTEKEKEEWINSIG 122
+D KP FEL G + +Y + A T++EK+EWI SI
Sbjct: 65 VDD-PRKPNCFELYIPNNKGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEWIKSIQ 123
Query: 123 RAI 125
A+
Sbjct: 124 AAV 126
>pdb|1EAZ|A Chain A, Crystal Structure Of The Phosphoinositol
(3,4)-Bisphosphate Binding Ph Domain Of Tapp1 From Human
Length = 125
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 29 RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE-- 86
++G+ KQG +K W+RR+F L + + +FK P VIP+ V+ +
Sbjct: 16 KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELE----KEPLRVIPLKEVHKVQECKQS 71
Query: 87 DLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIV 126
D++ + FE+ T T Y AD+ +E WI ++ AIV
Sbjct: 72 DIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIV 111
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 29 RSGWLTKQGDY-IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED 87
R GWL KQ +K W++RWF+L LF+++D G ++P + + +ED
Sbjct: 23 RRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKE--EGILGSILLPSFQ-IALLTSED 79
Query: 88 LLNKPFAFELSTGEY-TMYFVADTEKEKEEWINS-IGRAIVQHS 129
+N+ +AF+ + T YF DT KE E W+ + + A+VQ S
Sbjct: 80 HINRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALVQTS 123
>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Kiaa0053 Protein
Length = 118
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 21/112 (18%)
Query: 25 SNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG 84
S P + GWL KQ +K W++R+F+L+ +L+++KD + + P+G + + C
Sbjct: 6 SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEED----TKPQGCMYLPGCTI--- 58
Query: 85 AEDLLNKP-----FAFEL--------STGEYTMYFVADTEKEKEEWINSIGR 123
+++ P F FE+ G+ + +A ++ E EEW+ + R
Sbjct: 59 -KEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRR 109
>pdb|1FAO|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1PHISH IN COMPLEX WITH INOSITOL 1,3,4,5-
Tetrakisphosphate
pdb|1FB8|A Chain A, Structure Of The Pleckstrin Homology Domain From
Dapp1/phish
Length = 126
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 57/110 (51%), Gaps = 9/110 (8%)
Query: 29 RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG--AE 86
+ G+LTKQG +KTW+ RWF L + +L +FKD ++P P ++ + C V+ ++
Sbjct: 20 KEGYLTKQGGLVKTWKTRWFTLHRNELKYFKD--QMSP--EPIRILDLTECSAVQFDYSQ 75
Query: 87 DLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESE 136
+ +N F L T Y A T E +EWI + + Q + + + E
Sbjct: 76 ERVN---CFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGE 122
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 29 RSGWLTKQGDY-IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA-- 85
++GWL KQ +K W +RWF+L LF++KD + G IP+ L+ R A
Sbjct: 24 KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKE----ESILGSIPL---LSFRVAAV 76
Query: 86 --EDLLNKPFAFEL-STGEYTMYFVADTEKEKEEWINSIGRA 124
D +++ F+ G T +F A++ +E+E WI ++G A
Sbjct: 77 QPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 118
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 13/102 (12%)
Query: 29 RSGWLTKQGDY-IKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGA-- 85
++GWL KQ +K W +RWF+L LF++KD + G IP+ L+ R A
Sbjct: 13 KAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKE----ESILGSIPL---LSFRVAAV 65
Query: 86 --EDLLNKPFAFELS-TGEYTMYFVADTEKEKEEWINSIGRA 124
D +++ F+ G T +F A++ +E+E WI ++G A
Sbjct: 66 QPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 107
>pdb|1PLS|A Chain A, Solution Structure Of A Pleckstrin Homology Domain
Length = 113
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 29 RSGWLTKQGDYIKTWRRRWFI-LKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED 87
R G+L K+G TW+ W + L+ G F+ K S N +P+G+IP+ +D
Sbjct: 7 REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDN-----SPKGMIPLKGSTLTSPCQD 61
Query: 88 LLNKPFAFEL-STGEYTMYFVADTEKEKEEWINSIGRAI 125
+ F F++ +T + +F A +E++ W+ I +AI
Sbjct: 62 FGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAI 100
>pdb|2X18|A Chain A, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|B Chain B, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|C Chain C, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|D Chain D, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|E Chain E, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|F Chain F, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|G Chain G, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
pdb|2X18|H Chain H, The Crystal Structure Of The Ph Domain Of Human Akt3
Protein Kinase
Length = 119
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 29 RSGWLTKQGDYIKTWRRRWFILK-QGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED 87
+ GW+ K+G+YIK WR R+F+LK G +K+ P V C ++
Sbjct: 9 KEGWVQKRGEYIKNWRPRYFLLKTDGSFIGYKEKPQDVDLPYPLNNFSVAKCQLMKTERP 68
Query: 88 LLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
KP F + ++T F DT +E+EEW +I
Sbjct: 69 ---KPNTFIIRCLQWTTVIERTFHVDTPEEREEWTEAI 103
>pdb|1P6S|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Human Protein Kinase B Beta (PkbAKT)
Length = 111
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 29 RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGST--PRGVIPVGTCLTVRGAE 86
+ GWL K+G+YIKTWR R+F+LK F P T P V C ++
Sbjct: 8 KEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKERPEAPDQTLPPLNNFSVAECQLMKTER 67
Query: 87 DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
+P F + ++T F D+ E+EEW+ +I
Sbjct: 68 P---RPNTFVIRCLQWTTVIERTFHVDSPDEREEWMRAI 103
>pdb|1UNP|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of Pkb
Alpha
Length = 121
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 29 RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
+ GWL K+G+YIKTWR R+F+LK G +K+ ++ P V C ++
Sbjct: 8 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 67
Query: 87 DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
+P F + ++T F +T +E+EEW +I
Sbjct: 68 P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 103
>pdb|2UVM|A Chain A, Structure Of Pkbalpha Ph Domain In Complex With A Novel
Inositol Headgroup Surrogate, Benzene 1,2,3,4-
Tetrakisphosphate
Length = 123
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 29 RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
+ GWL K+G+YIKTWR R+F+LK G +K+ ++ P V C ++
Sbjct: 8 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 67
Query: 87 DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
+P F + ++T F +T +E+EEW +I
Sbjct: 68 P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 103
>pdb|1UNR|A Chain A, Crystal Structure Of The Ph Domain Of Pkb Alpha In Complex
With A Sulfate Molecule
pdb|1UNQ|A Chain A, High Resolution Crystal Structure Of The Pleckstrin
Homology Domain Of Protein Kinase BAKT BOUND TO INS
(1,3,4,5)-Tetrakisphophate
Length = 125
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 29 RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
+ GWL K+G+YIKTWR R+F+LK G +K+ ++ P V C ++
Sbjct: 10 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 69
Query: 87 DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
+P F + ++T F +T +E+EEW +I
Sbjct: 70 P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 105
>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric
Inhibitor
Length = 446
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 29 RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
+ GWL K+G+YIKTWR R+F+LK G +K+ ++ P V C ++
Sbjct: 11 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 70
Query: 87 DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
+P F + ++T F +T +E+EEW +I
Sbjct: 71 P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 106
>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex
With N-(4-
(5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h-
Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide
Length = 446
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 29 RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
+ GWL K+G+YIKTWR R+F+LK G +K+ ++ P V C ++
Sbjct: 8 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 67
Query: 87 DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
+P F + ++T F +T +E+EEW +I
Sbjct: 68 P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 103
>pdb|1H10|A Chain A, High Resolution Structure Of The Pleckstrin Homology
Domain Of Protein Kinase BAKT BOUND TO
Ins(1,3,4,5)-Tetrakisphophate
Length = 125
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 29 RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
+ GWL K+G+YIKTWR R+F+LK G +K+ ++ P V C +
Sbjct: 10 KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLXKTER 69
Query: 87 DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
+P F + ++T F +T +E+EEW +I
Sbjct: 70 P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 105
>pdb|2UZS|A Chain A, A Transforming Mutation In The Pleckstrin Homology Domain
Of Akt1 In Cancer (Akt1-Ph_e17k)
Length = 125
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 29 RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
+ GWL K+G YIKTWR R+F+LK G +K+ ++ P V C ++
Sbjct: 10 KEGWLHKRGKYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 69
Query: 87 DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
+P F + ++T F +T +E+EEW +I
Sbjct: 70 P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 105
>pdb|2UZR|A Chain A, A Transforming Mutation In The Pleckstrin Homology Domain
Of Akt1 In Cancer (Akt1-Ph_e17k)
Length = 124
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 29 RSGWLTKQGDYIKTWRRRWFILKQ-GKLFWFKDS-HNITPGSTPRGVIPVGTCLTVRGAE 86
+ GWL K+G YIKTWR R+F+LK G +K+ ++ P V C ++
Sbjct: 9 KEGWLHKRGKYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 68
Query: 87 DLLNKPFAFELSTGEYTMY----FVADTEKEKEEWINSI 121
+P F + ++T F +T +E+EEW +I
Sbjct: 69 P---RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAI 104
>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
Of Pepp1
pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
In Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 123
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 31 GWLTKQ-GDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLL 89
GWL KQ ++ W+RRWF+L LF++KDS S V+ + G
Sbjct: 15 GWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSRE---ESVLGSVLLPSYNIRPDGPGAPR 71
Query: 90 NKPFAFEL-STGEYTMYFVADTEKEKEEWINSIGRA 124
+ F F G T ADT ++ W+ ++GRA
Sbjct: 72 GRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 107
>pdb|3TFM|A Chain A, Myosin X Ph1n-Ph2-Ph1c Tandem
Length = 228
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 27/133 (20%)
Query: 16 EDYTGIEFWSNPE--RSGWLTKQGDYIKT-----WRRRWFILKQGKLFWFK-DSHNITPG 67
+D T + F S E + GWL G T W++RWF+L+Q KL +F+ DS G
Sbjct: 45 KDETFLWFRSKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKG 104
Query: 68 STPRGVIPVGTCLTVRGAEDLL---NKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRA 124
+ + VR A++++ NK ++ + T + +A++ ++ +W +
Sbjct: 105 T-----------VEVRSAKEIIDNTNKENGIDIIMADRTFHLIAESPEDASQWF-----S 148
Query: 125 IVQHSRSVTESEV 137
++ S T+ E+
Sbjct: 149 VLSQVHSSTDQEI 161
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFK 59
+P +L G + +W+RRW +LK WF+
Sbjct: 20 SPYFHSFLYMNGGLMNSWKRRWCVLKDETFLWFR 53
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 72 GVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRA 124
G + VG +V A D ++P +F + T ++ ADT +E WI + R+
Sbjct: 176 GTLDVGLIDSV-CASDSPDRPNSFVIITANRVLHCNADTPEEMHHWITLLQRS 227
>pdb|2RSG|A Chain A, Solution Structure Of The Cert Ph Domain
Length = 94
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 28 ERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAED 87
ER G L+K +YI W+ RW +LK L ++K G RG I + + D
Sbjct: 2 ERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGC--RGSICLSKAVITPHDFD 59
Query: 88 LLNKPFAFELSTGEYTMYFVADTEKEKEEWINSI 121
F++S + Y A +++WI++I
Sbjct: 60 ----ECRFDISVNDSVWYLRAQDPDHRQQWIDAI 89
>pdb|1XX0|A Chain A, Structure Of The C-Terminal Ph Domain Of Human Pleckstrin
Length = 127
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 22 EFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGST--PRGVIPVGTC 79
EF + G L KQG K W+ R FIL++ + H P P G I + C
Sbjct: 17 EFRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYL----HYYDPAGAEDPLGAIHLRGC 72
Query: 80 LTVRGAEDLLN-----KPFAFELSTGEYTMYFV-ADTEKEKEEWINSIGRA 124
+ V E N + FE+ T + YF+ A T KE+ EWI +I A
Sbjct: 73 V-VTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 122
>pdb|2KCJ|A Chain A, Solution Structure Of Fapp1 Ph Domain
Length = 108
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 31 GWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTC-LTVRGAEDLL 89
G L K +Y+ W+ RWF+L G L ++ ++ GS +G I + C + V A++
Sbjct: 11 GVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGS--KGSIKMAVCEIKVHSADNT- 67
Query: 90 NKPFAFELST-GEYTMYFVADTEKEKEEWINSIGRA 124
EL GE Y A E++ W+ ++G +
Sbjct: 68 ----RMELIIPGEQHFYMKAVNAAERQRWLVALGSS 99
>pdb|2I5C|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|B Chain B, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5C|C Chain C, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,4,5)p5
pdb|2I5F|A Chain A, Crystal Structure Of The C-Terminal Ph Domain Of
Pleckstrin In Complex With D-Myo-Ins(1,2,3,5,6)p5
Length = 109
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 29 RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGST--PRGVIPVGTCLTVRGAE 86
+ G L KQG K W+ R FIL++ + H P P G I + C+ V E
Sbjct: 9 KQGCLLKQGHRRKNWKVRKFILREDPAYL----HYYDPAGAEDPLGAIHLRGCV-VTSVE 63
Query: 87 DLLN-----KPFAFELSTGEYTMYFV-ADTEKEKEEWINSIGRA 124
N + FE+ T + YF+ A T KE+ EWI +I A
Sbjct: 64 SNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 107
>pdb|1ZM0|A Chain A, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
pdb|1ZM0|B Chain B, Crystal Structure Of The Carboxyl Terminal Ph Domain Of
Pleckstrin To 2.1 Angstroms
Length = 114
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 22 EFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGST--PRGVIPVGTC 79
EF + G L KQG K W+ R FIL++ + H P P G I + C
Sbjct: 4 EFRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYL----HYYDPAGAEDPLGAIHLRGC 59
Query: 80 LTVRGAEDLLN-----KPFAFELSTGEYTMYFV-ADTEKEKEEWINSIGRA 124
+ V E N + FE+ T + YF+ A T KE+ EWI +I A
Sbjct: 60 V-VTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 109
>pdb|1X05|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human
Pleckstrin
Length = 129
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 49/111 (44%), Gaps = 13/111 (11%)
Query: 22 EFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGST--PRGVIPVGTC 79
EF + G L KQG K W+ R FIL++ + H P P G I + C
Sbjct: 13 EFRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYL----HYYDPAGAEDPLGAIHLRGC 68
Query: 80 LTVRGAEDLLN-----KPFAFELSTGEYTMYFV-ADTEKEKEEWINSIGRA 124
+ V E N + FE+ T + YF+ A T KE+ EWI +I A
Sbjct: 69 V-VTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 118
>pdb|3RCP|A Chain A, Crystal Structure Of The Fapp1 Pleckstrin Homology Domain
Length = 103
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 11/109 (10%)
Query: 31 GWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTC-LTVRGAEDLL 89
G L K +Y+ W+ RWF+L G L ++ ++ GS +G I C + V A++
Sbjct: 3 GVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGS--KGSIKXAVCEIKVHSADNTR 60
Query: 90 NKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESEVV 138
+ + GE Y A E++ W+ ++G + S+T++ +V
Sbjct: 61 XEL----IIPGEQHFYXKAVNAAERQRWLVALGSS----KASLTDTRLV 101
>pdb|1WG7|A Chain A, Solution Structure Of Pleckstrin Homology Domain From
Human Kiaa1058 Protein
Length = 150
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 19/110 (17%)
Query: 29 RSGWLTKQGDY-------IKTWRRRWFILKQG-----KLFWFKDSHNITPGSTPRGVIPV 76
+ GWL K G+ +++++RR+F L Q L ++KD P+G I +
Sbjct: 20 KHGWLYK-GNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDE---KISKEPKGSIFL 75
Query: 77 GTCLTVRGAEDLLNKPFAFELSTGEYTMYFVA-DTEKEKEEWINSIGRAI 125
+C+ V ++ + FAFEL + + Y +A D+E E EEWI + + +
Sbjct: 76 DSCMGV--VQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKIL 123
>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
From Human
Length = 115
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 29 RSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
+ G++ K+G K W RWF+LK + ++ S ++ +G I + V D
Sbjct: 10 KQGYMMKKGHRRKNWTERWFVLKPNIISYYV-SEDLK---DKKGDILLDENCCVESLPDK 65
Query: 89 LNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
K F + + T A +K+K+EWI +I I
Sbjct: 66 DGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTI 102
>pdb|1X1G|A Chain A, Solution Structure Of The C-Terminal Ph Domain Of Human
Pleckstrin 2
Length = 129
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 23/116 (19%)
Query: 21 IEFWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWF-----KDSHNITPGSTPRGV-- 73
+E + G+L KQG K W+ R F+L++ F K+ + G + RG
Sbjct: 12 VELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLV 71
Query: 74 -------IPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFV-ADTEKEKEEWINSI 121
+P G V+G F++ T + T Y++ A ++ E+ EWI +I
Sbjct: 72 SALEDNGVPTGVKGNVQGN--------LFKVITKDDTHYYIQASSKAERAEWIEAI 119
>pdb|2DA0|A Chain A, Solution Structure Of The Ph Domain Of Pip2-Dependent Arf1
Gtpase-Activating Protein From Human
Length = 114
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 28 ERSGWLTKQGDYI-KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAE 86
E+ G+L K+ D I K W+RR +K G L + N P + + TC AE
Sbjct: 11 EKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNRQPAK-----LNLLTCQVKPNAE 65
Query: 87 DLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSI 121
D +F+L + T +F A+ E++ WI+ +
Sbjct: 66 D----KKSFDLISHNRTYHFQAEDEQDYVAWISVL 96
>pdb|2J59|M Chain M, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|N Chain N, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|O Chain O, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|P Chain P, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|Q Chain Q, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|R Chain R, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 168
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 25 SNPERSGWL----------TKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVI 74
S+ + GWL + G I+ W++ + +L+ L+ +KD T S I
Sbjct: 1 SDAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPI 60
Query: 75 PVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSI 121
V CL + + + F L+T + F A+ + WI +I
Sbjct: 61 SVNACL-IDISYSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTI 106
>pdb|1V5U|A Chain A, Solution Structure Of The C-Terminal Pleckstrin Homology
Domain Of Sbf1 From Mouse
Length = 117
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 31 GWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVR------G 84
G L K+G ++K W+ RWF+L + K H + + +GVI + V G
Sbjct: 12 GILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRM--DTECKGVIDLAEVEAVAPGTPTIG 69
Query: 85 AEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
A +++ F++ T F A ++W++ I +
Sbjct: 70 APKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCL 110
>pdb|2DHJ|A Chain A, Solution Structure Of The Ph Domain Of Rho Gtpase
Activating Protein 21 From Human
Length = 125
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 37 GDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLLNKPFAFE 96
G I+ W++ + +L+ L+ +KD T S I V CL + K F
Sbjct: 29 GGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNV-FR 87
Query: 97 LSTGEYTMYFVADTEKEKEEWINSI 121
L+T + F A+ + WI +I
Sbjct: 88 LTTSDCECLFQAEDRDDMLAWIKTI 112
>pdb|1WJM|A Chain A, Solution Structure Of Pleckstrin Homology Domain Of Human
Beta Iii Spectrin
Length = 123
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 41 KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRG--AEDLLNKPFAFELS 98
++W+ + +L++G L ++KD+ + G G +PV + +G A D + F+L
Sbjct: 30 RSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPV-SLARAQGSVAFDYRKRKHVFKLG 88
Query: 99 TGEYTMY-FVADTEKEKEEWINSIGRAIV 126
+ Y F A E E W+ + AI
Sbjct: 89 LQDGKEYLFQAKDEAEMSSWLRVVNAAIA 117
>pdb|2D9X|A Chain A, Solution Structure Of The Ph Domain Of Oxysterol Binding
Protein-Related Protein 11 From Human
Length = 120
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 31 GWLTKQGDYIKTWRRRWFIL--KQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDL 88
G+L K + + W+ R+F+L + G L +F + + PRG + + + ED
Sbjct: 12 GYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQ--SRNQKPRGTLQLAGAVISPSDED- 68
Query: 89 LNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSV 132
+ F ++GE D KE++ W++ + H+ ++
Sbjct: 69 -SHTFTVNAASGEQYKLRATDA-KERQHWVSRLQICTQHHTEAI 110
>pdb|1QQG|A Chain A, Crystal Structure Of The Ph-Ptb Targeting Region Of Irs-1
pdb|1QQG|B Chain B, Crystal Structure Of The Ph-Ptb Targeting Region Of Irs-1
Length = 264
Score = 33.5 bits (75), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 24 WSNPERSGWLTKQGDYIKTWRRRWFILKQG-------KLFWFKDSHN-ITPGSTPRGVIP 75
+S+ + G+L K K+ +R+F+L+ +L ++++ S P+ IP
Sbjct: 7 FSDVRKVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIP 62
Query: 76 VGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSI 121
+ +C + D NK L T + AD+E E++ W ++
Sbjct: 63 LESCFNINKRADSKNKHLV-ALYTRDEHFAIAADSEAEQDSWYQAL 107
>pdb|2COD|A Chain A, Solution Structure Of The N-Terminal Ph Domain Of Arap2
Protein From Human
Length = 115
Score = 33.1 bits (74), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 71 RGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHS 129
+G+IP+ TVR D NK FE+ T + T F + E+E+ +WI+ + A+ S
Sbjct: 49 KGIIPLSAISTVRVQGD--NK---FEVVTTQRTFVFRVEKEEERNDWISILLNALKSQS 102
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 29 RSGWLTKQG-DYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGT----CLTVR 83
+ G++ K G + +R+RWF + +L +FKD + + RG + +G+ +
Sbjct: 273 KEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLD----AFARGEVFIGSKESGYTVLH 328
Query: 84 GAEDLLNK---PFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
G P + T + F +TE ++ EW+ + +A+
Sbjct: 329 GFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAV 373
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 29 RSGWLTKQG-DYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGT----CLTVR 83
+ G++ K G + +R+RWF + +L +FKD + + RG + +G+ +
Sbjct: 271 KEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLD----AFARGEVFIGSKESGYTVLH 326
Query: 84 GAEDLLNK---PFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
G P + T + F +TE ++ EW+ + +A+
Sbjct: 327 GFPPSTQGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAV 371
>pdb|2DHI|A Chain A, Solution Structure Of The Ph Domain Of Evectin-2 From
Mouse
Length = 120
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 29 RSGWLTKQGDYIKTWRRRWFIL-KQGKLFWFKD 60
+SGWL +Q +K W++ WF L G L ++ D
Sbjct: 10 KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDD 42
>pdb|3AJ4|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From
Human Complexed With O-Phospho-L-Serine
pdb|3AJ4|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From
Human Complexed With O-Phospho-L-Serine
pdb|3VIA|A Chain A, Crystal Structure Of The Ph Domain Of Evectin-2 From
Human
pdb|3VIA|B Chain B, Crystal Structure Of The Ph Domain Of Evectin-2 From
Human
Length = 112
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 29 RSGWLTKQGDYIKTWRRRWFIL-KQGKLFWFKD 60
+SGWL +Q +K W++ WF L G L ++ D
Sbjct: 7 KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDD 39
>pdb|1V5P|A Chain A, Solution Structure Of The N-Terminal Pleckstrin Homology
Domain Of Tapp2 From Mouse
Length = 126
Score = 30.8 bits (68), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/87 (20%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 43 WRRRWFIL--KQGKLFWFKDS-HNITPGSTPRGVIPVG--TCLTVRGAEDLLNKPFAFEL 97
+ RR+FIL + L W+ D+ N+ G+ G + + + +++ + PF F +
Sbjct: 32 FLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVI 91
Query: 98 STGEYTMYFVADTEKEKEEWINSIGRA 124
+ + A+ +K+ ++W+ ++ +A
Sbjct: 92 NALSQRYFLQANDQKDLKDWVEALNQA 118
>pdb|2FJL|A Chain A, Solution Structure Of The Split Ph Domain In Phospholipase
C-Gamma1
Length = 150
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 67 GSTPRGVIPVGTCLTVRGAEDLLNKPFAFELS---TGEYTMYFVADTEKEKEEWINSIGR 123
G RGV+ V C E N+ F F +S ++++ AD+++E ++W+ I R
Sbjct: 86 GDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKI-R 144
Query: 124 AIVQ 127
+ Q
Sbjct: 145 EVAQ 148
>pdb|4BBK|A Chain A, Structural And Functional Characterisation Of The
Kindlin-1 Pleckstrin Homology Domain
Length = 165
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 19 TGIE-FWSNPERSGWLTKQGDYIKTWRRRWFILKQGKLFWF 58
+G+E + PE + K DY+K +R + +LK K +WF
Sbjct: 10 SGLEVLFQGPEDITDIPKLADYLKLFRPKKLMLKACKQYWF 50
>pdb|1U5D|A Chain A, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|B Chain B, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|C Chain C, Crystal Structure Of The Ph Domain Of Skap55
pdb|1U5D|D Chain D, Crystal Structure Of The Ph Domain Of Skap55
Length = 108
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 43 WRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPVGTCLTVRGAEDLL---NKPFAFELST 99
W++RW ++ +G +++ + + P+G + +VR A L K FEL++
Sbjct: 23 WQKRWCVVSRGLFYYYANEKS----KQPKGTFLIKG-YSVRMAPHLRRDSKKESCFELTS 77
Query: 100 GEYTMY-FVADTEKEKEEWINSIG 122
+ Y F A + E +W++ I
Sbjct: 78 QDRRTYEFTATSPAEARDWVDQIS 101
>pdb|2D9V|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin
Homology Domain-Containing Protein Family B Member 1
From Mouse
Length = 130
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 29 RSGWLTKQGDYIKTWRRRWFIL-KQGKLFWFKD 60
R GWL +Q ++ W+R WF L G L ++ D
Sbjct: 10 RGGWLWRQSSILRRWKRNWFALWLDGTLGYYHD 42
>pdb|1WI1|A Chain A, Solution Structure Of The Ph Domain Of Human Calcium-
Dependent Activator Protein For Secretion (Caps)
Length = 126
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 25 SNPERSGWLTKQGDYI-KTWRRRWFILKQGKLFWFKDSHNITPGSTPRGVIPV-GTCLTV 82
S + SG+L G + K W++R+F+L Q + F + P+ ++ + G +
Sbjct: 6 SGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDY 65
Query: 83 RGAEDLLNKPFAFELSTGEY-TMYFVADTEKEKEEWINSIGRAIVQHSRSVTESE 136
+ L AF + E T+ F +D E+++ W+ ++ RA Q + V ++
Sbjct: 66 TDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQSHKPVPPTQ 120
>pdb|3TCA|A Chain A, Crystal Structure Of The Ras-Associating And
Pleckstrin-Homology Domains Of Riam
pdb|3TCA|B Chain B, Crystal Structure Of The Ras-Associating And
Pleckstrin-Homology Domains Of Riam
Length = 291
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFW 57
PE G L + D K+W+RR+F+L+ +++
Sbjct: 168 PELEGALYLKEDGKKSWKRRYFLLRASGIYY 198
>pdb|4GN1|A Chain A, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
pdb|4GN1|B Chain B, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
pdb|4GN1|C Chain C, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
pdb|4GN1|D Chain D, Crystal Structure Of The Ra And Ph Domains Of Lamellipodin
Length = 255
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 27/116 (23%)
Query: 27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFWF----------------KDSHNITPGSTP 70
PE G L + D K+W++R+F+L+ +++ D N+ G
Sbjct: 132 PEIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQLDHVNVYYGQDY 191
Query: 71 RG--VIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRA 124
R P CL ++ + + K +Y Y D + +W+N I A
Sbjct: 192 RNKYKAPTDYCLVLKHPQ--IQKK-------SQYIKYLCCDDVRTLHQWVNGIRIA 238
>pdb|4GMV|A Chain A, Crystal Structure Of The Coiled-Coil, Ra And Ph Domains Of
Lamellipodin
pdb|4GMV|B Chain B, Crystal Structure Of The Coiled-Coil, Ra And Ph Domains Of
Lamellipodin
Length = 281
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 27/116 (23%)
Query: 27 PERSGWLTKQGDYIKTWRRRWFILKQGKLFWFK----------------DSHNITPGSTP 70
PE G L + D K+W++R+F+L+ +++ D N+ G
Sbjct: 158 PEIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQLDHVNVYYGQDY 217
Query: 71 RG--VIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRA 124
R P CL ++ + + K +Y Y D + +W+N I A
Sbjct: 218 RNKYKAPTDYCLVLKHPQ--IQKK-------SQYIKYLCCDDVRTLHQWVNGIRIA 264
>pdb|1WGQ|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Mouse Ethanol Decreased 4 Protein
Length = 109
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 41 KTWRRRWFILKQGKLFWFKDSHNITP-GSTPRGVIPVGTCLTVRGAEDLLNKPFAFELST 99
K W+ WF++K L+ + S ++ S P +G +T+ E+ +K F L
Sbjct: 22 KPWKHLWFVIKNKVLYTYAASEDVAALESQPL----LGFTVTLVKDENSESKVFQL-LHK 76
Query: 100 GEYTMYFVADTEKEKEEWINSIGRAIV 126
G F AD + WI++ V
Sbjct: 77 GMVFYVFKADDAHSTQRWIDAFQEGTV 103
>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5
Length = 434
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 92 PFAFELSTGEYTMYFVADTEKEKEEWINSIGRAI 125
P+A ++ T E + A + E++EW + RA+
Sbjct: 303 PYALKIETSESCLXLSASSCAERDEWYGCLSRAL 336
>pdb|3PP2|A Chain A, Crystal Structure Of The Pleckstrin Homology Domain Of
Arhgap27
pdb|3PP2|B Chain B, Crystal Structure Of The Pleckstrin Homology Domain Of
Arhgap27
Length = 124
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 41 KTWRRRWFILKQGKLFWFKDSHNITPG--------STPRGVIPVGTCLTVRGAEDLLNKP 92
K W W +L+ G L +FKDS G STP + + +D ++
Sbjct: 29 KHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDKSSRK 88
Query: 93 FAFELSTGEYTMYFVA-DTEKEKEEWINSIGRAI 125
EL + + + Y + D+E W +I + I
Sbjct: 89 NVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGI 122
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 31 GWLTKQGD-YIKTWRRRWFILKQGKLFW 57
G+++K G+ ++ W+RR+F L +L W
Sbjct: 563 GYMSKMGNPFLTQWQRRYFYLFPNRLEW 590
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 31 GWLTKQGD-YIKTWRRRWFILKQGKLFW 57
G+++K G+ ++ W+RR+F L +L W
Sbjct: 563 GYMSKMGNPFLTQWQRRYFYLFPNRLEW 590
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 27.7 bits (60), Expect = 2.5, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 31 GWLTKQGD-YIKTWRRRWFILKQGKLFW 57
G+++K G+ ++ W+RR+F L +L W
Sbjct: 563 GYMSKMGNPFLTQWQRRYFYLFPNRLEW 590
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 27.7 bits (60), Expect = 2.5, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 31 GWLTKQGD-YIKTWRRRWFILKQGKLFW 57
G+++K G+ ++ W+RR+F L +L W
Sbjct: 562 GYMSKMGNPFLTQWQRRYFYLFPNRLEW 589
>pdb|1V88|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of
Oxysterol-Binding Protein-Related Protein 8 (Kiaa1451
Protein)
Length = 130
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 32 WLTKQGDYIKTWRRRWFILKQGKLFWFKDSHN 63
WL +G +K+W + W +LK G L +K N
Sbjct: 13 WLKIRGT-LKSWTKLWCVLKPGVLLIYKTQKN 43
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 75 PVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVAD 109
PVG+ +T A D+ N P F +S E + +F +
Sbjct: 25 PVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVE 59
>pdb|3ML1|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase
From Cupriavidus Necator
Length = 802
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 2 ENIWRALSGQDPNPEDYTGIEFWSNPE 28
E WR G DP + TG +F+ NP+
Sbjct: 639 ETRWRYREGSDPYVKAGTGFQFYGNPD 665
>pdb|3O5A|A Chain A, Crystal Structure Of Partially Reduced Periplasmic Nitrate
Reductase From Cupriavidus Necator Using Ionic Liquids
Length = 802
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 2 ENIWRALSGQDPNPEDYTGIEFWSNPE 28
E WR G DP + TG +F+ NP+
Sbjct: 639 ETRWRYREGSDPYVKAGTGFQFYGNPD 665
>pdb|1V5V|A Chain A, Crystal Structure Of A Component Of Glycine Cleavage
System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5
A Resolution
pdb|1V5V|B Chain B, Crystal Structure Of A Component Of Glycine Cleavage
System: T-Protein From Pyrococcus Horikoshii Ot3 At 1.5
A Resolution
Length = 401
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 79 CLTVRGAEDLLNKPFAFELSTGEYTMYFVADTEKEKEEWINSIGRAIVQHSRSVTESEVV 138
L RGA + ++ F + EY M +D ++ W + R I Q ++ E E+
Sbjct: 90 VLNERGA--IKDETLVFNMGNNEYLMICDSDAFEKLYAWFTYLKRTIEQFTKLDLEIELK 147
Query: 139 DYD 141
YD
Sbjct: 148 TYD 150
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 75 PVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTE 111
PVG+ +T A D+ N P F +S E + +F + +
Sbjct: 24 PVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPD 60
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 75 PVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTE 111
PVG+ +T A D+ N P F +S E + +F + +
Sbjct: 25 PVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPD 61
>pdb|1MKE|A Chain A, Structure Of The N-Wasp Evh1 Domain-Wip Complex
Length = 152
Score = 26.2 bits (56), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 12/47 (25%)
Query: 26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRG 72
NP+RS +L R F +K GKL W ++ +N ++PRG
Sbjct: 73 NPQRSYFL------------RIFDIKDGKLLWEQELYNNFVYNSPRG 107
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 75 PVGTCLTVRGAEDLLNKPFAFELSTGEYTMYFVADTE 111
PVG+ +T A D+ N P F +S E + +F + +
Sbjct: 25 PVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPD 61
>pdb|4I77|Z Chain Z, Lebrikizumab Fab Bound To Il-13
Length = 112
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 50 LKQGKLFWFKDSHNITPG---STPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYF 106
L G + W S N+T G + +I V C + + +L+ ++S G+++
Sbjct: 27 LCNGSMVW---SINLTAGMYCAALESLINVSGCSAIEKTQRMLSGFCPHKVSAGQFSSLH 83
Query: 107 VADTEKEKEEWI 118
V DT+ E +++
Sbjct: 84 VRDTKIEVAQFV 95
>pdb|1GA3|A Chain A, Nmr Structure Of Interleukin-13
Length = 113
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 50 LKQGKLFWFKDSHNITPG---STPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYF 106
L G + W S N+T G + +I V C + + +L+ ++S G+++
Sbjct: 28 LCNGSMVW---SINLTAGMYCAALESLINVSGCSAIEKTQRMLSGFCPHKVSAGQFSSLH 84
Query: 107 VADTEKEKEEWI 118
V DT+ E +++
Sbjct: 85 VRDTKIEVAQFV 96
>pdb|1IJZ|A Chain A, Solution Structure Of Human Il-13
pdb|1IK0|A Chain A, Solution Structure Of Human Il-13
pdb|3G6D|A Chain A, Crystal Structure Of The Complex Between Cnto607 Fab And
Il-13
pdb|3L5W|I Chain I, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L5W|J Chain J, Crystal Structure Of The Complex Between Il-13 And C836
Fab
pdb|3L5X|A Chain A, Crystal Structure Of The Complex Between Il-13 And H2l6
Fab
pdb|3L5Y|A Chain A, Crystal Structure Of The Complex Between Il-13 And M1295
Fab
Length = 113
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 50 LKQGKLFWFKDSHNITPG---STPRGVIPVGTCLTVRGAEDLLNKPFAFELSTGEYTMYF 106
L G + W S N+T G + +I V C + + +L+ ++S G+++
Sbjct: 28 LCNGSMVW---SINLTAGMYCAALESLINVSGCSAIEKTQRMLSGFCPHKVSAGQFSSLH 84
Query: 107 VADTEKEKEEWI 118
V DT+ E +++
Sbjct: 85 VRDTKIEVAQFV 96
>pdb|2IFS|A Chain A, Structure Of The N-Wasp Evh1 Domain In Complex With An
Extended Wip Peptide
Length = 169
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 12/47 (25%)
Query: 26 NPERSGWLTKQGDYIKTWRRRWFILKQGKLFWFKDSHNITPGSTPRG 72
NP+RS +L R F +K GKL W ++ +N ++PRG
Sbjct: 90 NPQRSYFL------------RIFDIKDGKLLWEQELYNNFVYNSPRG 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,150,811
Number of Sequences: 62578
Number of extensions: 217996
Number of successful extensions: 598
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 102
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)