BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041557
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5E450|MNMC_VIBF1 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Vibrio fischeri (strain ATCC 700601 /
ES114) GN=mnmC PE=3 SV=1
Length = 680
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 66 VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLI---FDHATQFF 122
V IIGGG+A A A L +RGVK +V+ +G G + PL+ F+ ++FF
Sbjct: 274 VAIIGGGVASAALATTLIRRGVKVSVYCKDEKSAQGASGNKQGAVYPLLNEKFNSLSRFF 333
Query: 123 T 123
Sbjct: 334 A 334
>sp|Q6LNT9|MNMC_PHOPR tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Photobacterium profundum GN=mnmC PE=3
SV=1
Length = 697
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 66 VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLI---FDHATQFF 122
V IIGGG+A AL L +RGV ++ + EG G R PL+ D T+FF
Sbjct: 292 VAIIGGGVASATTALALIRRGVNVTLYCADSLPAEGASGNRQGAVYPLLNGSNDCLTRFF 351
>sp|Q729K0|TRMFO_DESVH Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase
TrmFO OS=Desulfovibrio vulgaris (strain Hildenborough /
ATCC 29579 / NCIMB 8303) GN=trmFO PE=3 SV=1
Length = 474
Score = 34.7 bits (78), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 9/41 (21%)
Query: 68 IIGGGMAVLACALRLDKRGVKSNVFDM---------GNPDL 99
IIG G+A CALRL + GV+ +F+M NPDL
Sbjct: 13 IIGAGLAGCECALRLARAGVRVTLFEMKPAAFSPAHSNPDL 53
>sp|Q5E0X7|GLPB_VIBF1 Anaerobic glycerol-3-phosphate dehydrogenase subunit B OS=Vibrio
fischeri (strain ATCC 700601 / ES114) GN=glpB PE=3 SV=1
Length = 455
Score = 34.7 bits (78), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 68 IIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT 105
IIGGGMA L+CALR + G+K+ V G L G+
Sbjct: 7 IIGGGMAGLSCALRCLEAGLKTAVIASGQSALHFSSGS 44
>sp|A1VBW6|TRMFO_DESVV Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase
TrmFO OS=Desulfovibrio vulgaris subsp. vulgaris (strain
DP4) GN=trmFO PE=3 SV=1
Length = 482
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 9/41 (21%)
Query: 68 IIGGGMAVLACALRLDKRGVKSNVFDM---------GNPDL 99
IIG G+A CALRL + GV+ +F+M NPDL
Sbjct: 9 IIGAGLAGCECALRLARAGVRVTLFEMKPAAFSPAHSNPDL 49
>sp|B5ET22|GLPB_VIBFM Anaerobic glycerol-3-phosphate dehydrogenase subunit B OS=Vibrio
fischeri (strain MJ11) GN=glpB PE=3 SV=1
Length = 455
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 68 IIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT 105
IIGGGMA L+CALR + G+K+ V G L G+
Sbjct: 7 IIGGGMAGLSCALRCLEAGLKTAVIASGQSALHFSSGS 44
>sp|P43800|GLPB_HAEIN Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121
/ KW20 / Rd) GN=glpB PE=3 SV=1
Length = 432
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT-RMIGRQP 112
N V IIGGG+A L CA+ L +RG + + + G ++ G+ ++ R P
Sbjct: 2 NFDVAIIGGGLAGLTCAIALQQRGKRCVIINNGQAAIDFASGSLDLLSRMP 52
>sp|A8QL58|OXLA_NAJAT L-amino-acid oxidase (Fragment) OS=Naja atra PE=1 SV=1
Length = 449
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 41 RRSALKKTFTQKQFTFTAPIS-------SNP-HVKIIGGGMAVLACALRLDKRGVKSNVF 92
RRS L++ F Q + I+ SNP HV ++G GMA L+ A L G K +
Sbjct: 22 RRSPLEECFQQNDYEEILEIARNGLKKTSNPKHVVVVGAGMAGLSAAYVLAGAGHKVTLL 81
Query: 93 DMGNPDLEGRMGTRMI 108
+ R+G R+I
Sbjct: 82 EASE-----RVGGRVI 92
>sp|Q6D2N1|MNMC_ERWCT tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=mnmC PE=3 SV=1
Length = 675
Score = 33.5 bits (75), Expect = 0.77, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLI---FDH 117
S+ + IIGGG+A + AL L +RG ++ + G G R PL+ D
Sbjct: 263 STTDDIAIIGGGIASVLTALALQRRGANVTLYCAESQPATGASGNRQGALYPLLNNRHDA 322
Query: 118 ATQFFTV 124
++FF++
Sbjct: 323 VSRFFSL 329
>sp|A8QL51|OXLA_BUNMU L-amino-acid oxidase OS=Bungarus multicinctus PE=2 SV=1
Length = 517
Score = 33.5 bits (75), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 13/74 (17%)
Query: 41 RRSALKKTFTQKQFTFTAPIS-------SNP-HVKIIGGGMAVLACALRLDKRGVKSNVF 92
RRS L++ F + + I+ SNP HV ++G GMA L+ A L+K G + +
Sbjct: 22 RRSPLEECFREADYEEFLEIARNGLKKTSNPKHVVVVGAGMAGLSAAYVLEKAGHRVTLL 81
Query: 93 DMGNPDLEGRMGTR 106
+ + R+G R
Sbjct: 82 EASD-----RVGGR 90
>sp|Q47XJ9|MNMC_COLP3 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Colwellia psychrerythraea (strain 34H /
ATCC BAA-681) GN=mnmC PE=3 SV=1
Length = 682
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 56 FTAPISSNP-HVKIIGGGMAVLACALRLDKRGVKSNVF 92
+ P+ + P HV IIGGG+A A L K+GVK ++
Sbjct: 259 YLRPLITKPQHVSIIGGGIASACAAYALTKQGVKVTLY 296
>sp|Q6F7Y9|MNMC_ACIAD tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Acinetobacter sp. (strain ADP1) GN=mnmC
PE=3 SV=1
Length = 623
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 29/108 (26%)
Query: 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLI------ 114
S+ H +IG G+A L CA L +RG + + D P L G G + P +
Sbjct: 260 STQQHFAVIGAGIAGLHCAWSLAQRGHRVTLVDQSQP-LSGASGNPLALLNPKLCPITQC 318
Query: 115 FDHATQFFTVNDSRFGELVDVCWKVVLLLGYSKS--QNLNIFQTSKVN 160
DH L+ +CW+ Y++ QN F+ +VN
Sbjct: 319 HDH--------------LMVLCWQ------YARRFYQNFEAFRLIQVN 346
>sp|A0KV89|MNMC_SHESA tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Shewanella sp. (strain ANA-3) GN=mnmC
PE=3 SV=2
Length = 697
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 47 KTFTQKQFTFTAPISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTR 106
+ FT K T A +P V I+GGG+A L L +RG S +F N +G G R
Sbjct: 261 QAFTPKPATLAA--IDHP-VAIVGGGLASANLMLSLAERGQSSTLFCKDNELGQGASGNR 317
Query: 107 MIGRQPLIF---DHATQFF 122
PL+ D ++FF
Sbjct: 318 QGAIYPLLTPENDELSRFF 336
>sp|P09832|GLTD_ECOLI Glutamate synthase [NADPH] small chain OS=Escherichia coli (strain
K12) GN=gltD PE=1 SV=3
Length = 472
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 66 VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103
V IIG G A LACA L + GVK+ VFD +P++ G +
Sbjct: 149 VAIIGAGPAGLACADVLTRNGVKAVVFDR-HPEIGGLL 185
>sp|Q0HWM0|MNMC_SHESR tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Shewanella sp. (strain MR-7) GN=mnmC
PE=3 SV=2
Length = 703
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 47 KTFTQKQFTFTAPISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTR 106
+ FT K A ++ + V I+GGG+A L L +RG S +F N +G G R
Sbjct: 267 QAFTPKP---AALVAKDHPVAIVGGGLASANLMLSLAERGQSSTLFCKDNELGQGASGNR 323
Query: 107 MIGRQPLIF---DHATQFF 122
PL+ D ++FF
Sbjct: 324 QGAIYPLLTPENDELSRFF 342
>sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum
GN=PPXII PE=1 SV=1
Length = 504
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG--TRMIGRQPLIFDHA 118
SS V +IG G++ LA A +L G+ VF+ EG+ G R + + LI+D
Sbjct: 11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEA-----EGKAGGKLRSVSQDGLIWDEG 65
Query: 119 TQFFTVNDSRFGELVD 134
T ++ L+D
Sbjct: 66 ANTMTESEGDVTFLID 81
>sp|Q0HKB8|MNMC_SHESM tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Shewanella sp. (strain MR-4) GN=mnmC
PE=3 SV=2
Length = 699
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 47 KTFTQKQFTFTAPISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTR 106
+ FT K TA + + + I+GGG+A L L +RG S +F N +G G R
Sbjct: 263 QAFTPKP---TALATKDHPIAIVGGGLASANLMLSLAERGQSSTLFCKDNELGQGASGNR 319
Query: 107 MIGRQPLIF---DHATQFF 122
PL+ D ++FF
Sbjct: 320 QGAIYPLLTPENDELSRFF 338
>sp|B1JGH2|MNMC_YERPY tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=mnmC PE=3 SV=1
Length = 689
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 41 RRSALKKTFTQKQFTFTAPISSNP------HVKIIGGGMAVLACALRLDKRGVKSNVFDM 94
+R L T Q+ TAP P + IIGGG+ AL L +RG ++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 95 GNPDLEGRMGTRMIGRQPLI---FDHATQFFT 123
+G G R PL+ D FFT
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFT 327
>sp|Q668W0|MNMC_YERPS tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=mnmC PE=3 SV=2
Length = 689
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 41 RRSALKKTFTQKQFTFTAPISSNP------HVKIIGGGMAVLACALRLDKRGVKSNVFDM 94
+R L T Q+ TAP P + IIGGG+ AL L +RG ++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 95 GNPDLEGRMGTRMIGRQPLI---FDHATQFFT 123
+G G R PL+ D FFT
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFT 327
>sp|A4TM73|MNMC_YERPP tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pestis (strain Pestoides F)
GN=mnmC PE=3 SV=1
Length = 689
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 41 RRSALKKTFTQKQFTFTAPISSNP------HVKIIGGGMAVLACALRLDKRGVKSNVFDM 94
+R L T Q+ TAP P + IIGGG+ AL L +RG ++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 95 GNPDLEGRMGTRMIGRQPLI---FDHATQFFT 123
+G G R PL+ D FFT
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFT 327
>sp|Q1CHL1|MNMC_YERPN tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=mnmC PE=3 SV=1
Length = 689
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 41 RRSALKKTFTQKQFTFTAPISSNP------HVKIIGGGMAVLACALRLDKRGVKSNVFDM 94
+R L T Q+ TAP P + IIGGG+ AL L +RG ++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 95 GNPDLEGRMGTRMIGRQPLI---FDHATQFFT 123
+G G R PL+ D FFT
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFT 327
>sp|A9R7V8|MNMC_YERPG tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pestis bv. Antiqua (strain
Angola) GN=mnmC PE=3 SV=1
Length = 689
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 41 RRSALKKTFTQKQFTFTAPISSNP------HVKIIGGGMAVLACALRLDKRGVKSNVFDM 94
+R L T Q+ TAP P + IIGGG+ AL L +RG ++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 95 GNPDLEGRMGTRMIGRQPLI---FDHATQFFT 123
+G G R PL+ D FFT
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFT 327
>sp|Q8ZD36|MNMC_YERPE tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pestis GN=mnmC PE=1 SV=1
Length = 689
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 41 RRSALKKTFTQKQFTFTAPISSNP------HVKIIGGGMAVLACALRLDKRGVKSNVFDM 94
+R L T Q+ TAP P + IIGGG+ AL L +RG ++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 95 GNPDLEGRMGTRMIGRQPLI---FDHATQFFT 123
+G G R PL+ D FFT
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFT 327
>sp|B2K8I4|MNMC_YERPB tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=mnmC PE=3 SV=1
Length = 689
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 41 RRSALKKTFTQKQFTFTAPISSNP------HVKIIGGGMAVLACALRLDKRGVKSNVFDM 94
+R L T Q+ TAP P + IIGGG+ AL L +RG ++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 95 GNPDLEGRMGTRMIGRQPLI---FDHATQFFT 123
+G G R PL+ D FFT
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFT 327
>sp|Q1C669|MNMC_YERPA tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=mnmC PE=3 SV=1
Length = 689
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 41 RRSALKKTFTQKQFTFTAPISSNP------HVKIIGGGMAVLACALRLDKRGVKSNVFDM 94
+R L T Q+ TAP P + IIGGG+ AL L +RG ++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 95 GNPDLEGRMGTRMIGRQPLI---FDHATQFFT 123
+G G R PL+ D FFT
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFT 327
>sp|A7FGL1|MNMC_YERP3 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Yersinia pseudotuberculosis serotype
O:1b (strain IP 31758) GN=mnmC PE=3 SV=1
Length = 689
Score = 32.7 bits (73), Expect = 1.6, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 41 RRSALKKTFTQKQFTFTAPISSNP------HVKIIGGGMAVLACALRLDKRGVKSNVFDM 94
+R L T Q+ TAP P + IIGGG+ AL L +RG ++
Sbjct: 236 KREMLTGTLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCA 295
Query: 95 GNPDLEGRMGTRMIGRQPLI---FDHATQFFT 123
+G G R PL+ D FFT
Sbjct: 296 DAQPAQGASGNRQGALYPLLNGKNDALETFFT 327
>sp|Q65R09|GLPB_MANSM Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Mannheimia succiniciproducens (strain MBEL55E)
GN=glpB PE=3 SV=1
Length = 431
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT-RMIGRQP 112
N V IIG G+A L C L L ++GV+ + + G L+ G+ ++ R P
Sbjct: 2 NFDVVIIGAGIAGLTCGLTLQEKGVRCAIINNGQAALDFSSGSMDLLSRLP 52
>sp|Q9KA24|TRMFO_BACHD Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase
TrmFO OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=trmFO PE=3
SV=1
Length = 435
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM 94
S PH+ +IG G+A A ++ +RG+ ++++M
Sbjct: 2 STPHINVIGAGLAGSEAAWQIAERGIAVHLYEM 34
>sp|A5UE48|GLPB_HAEIE Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Haemophilus influenzae (strain PittEE) GN=glpB PE=3
SV=1
Length = 432
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT-RMIGRQP 112
N V IIGGG+A L C + L +RG + + + G ++ G+ ++ R P
Sbjct: 2 NFDVAIIGGGLAGLTCGIALQQRGKRCVIINNGQAAIDFASGSLDLLSRMP 52
>sp|A5IG23|KMO_LEGPC Kynurenine 3-monooxygenase OS=Legionella pneumophila (strain
Corby) GN=kmo PE=3 SV=1
Length = 449
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99
H+ IIG G+A C L L +RG + +F+ PD+
Sbjct: 3 HITIIGAGLAGTLCGLYLARRGYEVELFE-SRPDI 36
>sp|Q5WY16|KMO_LEGPL Kynurenine 3-monooxygenase OS=Legionella pneumophila (strain
Lens) GN=kmo PE=3 SV=1
Length = 449
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99
H+ IIG G+A C L L +RG + +F+ PD+
Sbjct: 3 HITIIGAGLAGTLCGLYLARRGYEVELFE-SRPDI 36
>sp|Q6LSE4|GLPB_PHOPR Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Photobacterium profundum GN=glpB PE=3 SV=1
Length = 442
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 68 IIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT 105
IIGGG+A L+CA+R + G+K+ V G L G+
Sbjct: 7 IIGGGVAGLSCAIRCAEAGMKTAVIAAGQSALHFSSGS 44
>sp|A6VKT7|GLPB_ACTSZ Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Actinobacillus succinogenes (strain ATCC 55618 /
130Z) GN=glpB PE=3 SV=1
Length = 430
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT-RMIGRQP 112
N V IIGGG+A L C + L ++G + + + G ++ G+ ++GR P
Sbjct: 2 NFDVVIIGGGLAGLTCGIALQEQGKRCAIVNNGQAAMDFSTGSIDLLGRLP 52
>sp|B0UT85|MNMC_HAES2 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus somnus (strain 2336) GN=mnmC
PE=3 SV=1
Length = 676
Score = 31.6 bits (70), Expect = 3.5, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 9/68 (13%)
Query: 32 RRGSSYGSPR------RSALKKTFTQKQFTFTAPISS-NPHVKIIGGGMAVLACALRLDK 84
R+G YG R ++A+ + T+ + + P S + + IIGGG+A L AL L K
Sbjct: 226 RKG--YGKKRECLCGIKNAIPQQNTKAPWYLSQPASLLSEDIAIIGGGIASLFTALSLLK 283
Query: 85 RGVKSNVF 92
RG K ++
Sbjct: 284 RGAKITLY 291
>sp|P44246|MNMC_HAEIN tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=mnmC PE=3 SV=2
Length = 670
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 66 VKIIGGGMAVLACALRLDKRGVKSNVF 92
V IIGGG+A L A+ L KRG K ++
Sbjct: 266 VAIIGGGIASLCAAISLIKRGAKVTIY 292
>sp|A5UCC9|MNMC_HAEIE tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus influenzae (strain PittEE)
GN=mnmC PE=3 SV=1
Length = 670
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 66 VKIIGGGMAVLACALRLDKRGVKSNVF 92
V IIGGG+A L A+ L KRG K ++
Sbjct: 266 VAIIGGGIASLCAAISLVKRGAKVTIY 292
>sp|A5UHH2|GLPB_HAEIG Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Haemophilus influenzae (strain PittGG) GN=glpB PE=3
SV=1
Length = 432
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT-RMIGRQP 112
N V IIGGG+A L C + + +RG + + + G ++ G+ ++ R P
Sbjct: 2 NFDVAIIGGGLAGLTCGIAIQQRGKRCVIINNGQAAIDFASGSLDLLSRMP 52
>sp|A4WCP1|GLPB_ENT38 Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Enterobacter sp. (strain 638) GN=glpB PE=3 SV=1
Length = 419
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 68 IIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT-RMIGRQP 112
IIGGG+A + C L+L +RG++ + G L G+ ++G P
Sbjct: 7 IIGGGLAGILCGLKLTQRGLRCAIVSRGQSALHFSSGSLDLLGALP 52
>sp|P17239|MERA_THIFE Mercuric reductase OS=Thiobacillus ferrooxidans GN=merA PE=1 SV=2
Length = 547
Score = 30.8 bits (68), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 65 HVKIIGGGMAVLACALRLDKRGVKSNVFD 93
H+ +IG G A +ACAL+ +RG + + +
Sbjct: 86 HIAVIGSGGAAMACALKAVERGARVTLIE 114
>sp|A1RIA5|MNMC_SHESW tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Shewanella sp. (strain W3-18-1) GN=mnmC
PE=3 SV=1
Length = 680
Score = 30.8 bits (68), Expect = 5.3, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 66 VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIF---DHATQFF 122
+ IIGGG+A AL L +RG + +F +G G R PL+ D ++FF
Sbjct: 270 IAIIGGGLASAHLALSLAERGQSTQIFCKDAKLGQGASGNRQGAIYPLLTPENDELSRFF 329
>sp|A4Y884|MNMC_SHEPC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Shewanella putrefaciens (strain CN-32 /
ATCC BAA-453) GN=mnmC PE=3 SV=1
Length = 680
Score = 30.8 bits (68), Expect = 5.3, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 66 VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIF---DHATQFF 122
+ IIGGG+A AL L +RG + +F +G G R PL+ D ++FF
Sbjct: 270 IAIIGGGLASAHLALSLAERGQSTQIFCKDAKLGQGASGNRQGAIYPLLTPENDELSRFF 329
>sp|Q9CNT7|MNMC_PASMU tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Pasteurella multocida (strain Pm70)
GN=mnmC PE=3 SV=1
Length = 672
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 58 APISSNPHVKIIGGGMAVLACALRLDKRGVKSNVF 92
A ++ N + +IGGG+A + AL L +RG K V+
Sbjct: 258 AELTENADIALIGGGIASVFSALSLLERGAKVTVY 292
>sp|Q5QUE0|MNMC_IDILO tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=mnmC PE=3 SV=1
Length = 606
Score = 30.8 bits (68), Expect = 5.7, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 66 VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHAT------ 119
V IIGGG++ AL L RGV V G+ D G G PL+ T
Sbjct: 251 VTIIGGGISAACSALALKHRGVNVRVISAGSAD--GASGNPQGAVYPLLHAEYTPLSRFY 308
Query: 120 -QFFTVNDSRFGELVDVCW 137
Q F+ S + D W
Sbjct: 309 WQAFSTATSFYRNFCDDHW 327
>sp|Q7VM49|GLPB_HAEDU Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724)
GN=glpB PE=3 SV=1
Length = 426
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT 105
N V IIGGG+A L C + L K+G + + + G ++ G+
Sbjct: 2 NFDVVIIGGGLAGLTCGIALQKQGKQCAIINNGQAAIDFSSGS 44
>sp|Q3IF34|MNMC_PSEHT tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Pseudoalteromonas haloplanktis (strain
TAC 125) GN=mnmC PE=3 SV=1
Length = 669
Score = 30.0 bits (66), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 41 RRSALKKTFTQKQFTFTAP------ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVF 92
+RS L T T +AP +S +V +IGGG+A L KRG+ S +F
Sbjct: 237 KRSMLIGTLKHTNDTQSAPSYFNHDVSPLSNVAVIGGGIASSCILYSLAKRGISSQLF 294
>sp|C3LP59|MNMC_VIBCM tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Vibrio cholerae serotype O1 (strain
M66-2) GN=mnmC PE=3 SV=1
Length = 674
Score = 30.0 bits (66), Expect = 9.8, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 66 VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLI 114
V IIGGG+A A L +RGV ++ +G G R PL+
Sbjct: 269 VAIIGGGIASATLATTLARRGVAVTLYCADEKPAQGASGNRQGAVYPLL 317
>sp|Q9KQ91|MNMC_VIBCH tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=mnmC PE=3 SV=1
Length = 674
Score = 30.0 bits (66), Expect = 9.8, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 66 VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLI 114
V IIGGG+A A L +RGV ++ +G G R PL+
Sbjct: 269 VAIIGGGIASATLATTLARRGVAVTLYCADEKPAQGASGNRQGAVYPLL 317
>sp|A5F6E9|MNMC_VIBC3 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Vibrio cholerae serotype O1 (strain ATCC
39541 / Ogawa 395 / O395) GN=mnmC PE=3 SV=1
Length = 674
Score = 30.0 bits (66), Expect = 9.8, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 66 VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLI 114
V IIGGG+A A L +RGV ++ +G G R PL+
Sbjct: 269 VAIIGGGIASATLATTLARRGVAVTLYCADEKPAQGASGNRQGAVYPLL 317
>sp|C6DH98|GLPB_PECCP Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Pectobacterium carotovorum subsp. carotovorum (strain
PC1) GN=glpB PE=3 SV=1
Length = 420
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 21/129 (16%)
Query: 66 VKIIGGGMAVLACALRLDKRGVKSNV---------FDMGNPDLEGRMGTRMIGRQPL--I 114
V IIGGG+A L C +RL ++G + + F G DL + QPL +
Sbjct: 5 VVIIGGGLAGLTCGIRLAEQGKRCAIVSAGQNALHFSSGALDLLSHLPDGQPVSQPLEAL 64
Query: 115 FDHATQFFTVNDSRFG--ELVDVCWKVVLLLGYSKSQNLNIFQ-----TSKVNVVRTCWI 167
+ A Q SR G + + +V LL S L +Q + + R CW+
Sbjct: 65 DELARQAPHHPYSRMGAAAVAALLPQVEALLERSTISLLGSYQQNHWRMTPLGKFRACWL 124
Query: 168 SNLEPFNGM 176
S P +G+
Sbjct: 125 S---PVDGV 130
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,988,052
Number of Sequences: 539616
Number of extensions: 2697544
Number of successful extensions: 7023
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 6947
Number of HSP's gapped (non-prelim): 108
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)