Query 041557
Match_columns 189
No_of_seqs 209 out of 2083
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:22:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041557.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041557hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 99.8 4.7E-19 1E-23 146.9 9.1 114 65-184 3-143 (331)
2 PRK09853 putative selenate red 99.4 2.6E-13 5.5E-18 130.4 9.5 100 4-104 473-579 (1019)
3 TIGR03315 Se_ygfK putative sel 99.4 1.2E-13 2.6E-18 132.9 6.5 100 4-104 471-577 (1012)
4 PRK12775 putative trifunctiona 99.4 2.5E-13 5.5E-18 131.5 7.6 100 4-104 365-470 (1006)
5 PRK12779 putative bifunctional 99.4 3.1E-13 6.6E-18 130.1 7.8 98 4-104 234-346 (944)
6 PF13450 NAD_binding_8: NAD(P) 99.4 1.1E-12 2.5E-17 88.0 7.5 65 68-135 1-67 (68)
7 PRK12831 putative oxidoreducta 99.4 3.3E-13 7.2E-18 121.1 6.1 100 4-104 74-180 (464)
8 PRK12810 gltD glutamate syntha 99.4 3.9E-13 8.3E-18 120.7 5.8 99 4-103 78-182 (471)
9 PRK12769 putative oxidoreducta 99.4 1E-12 2.2E-17 122.4 8.1 100 4-104 260-367 (654)
10 TIGR01318 gltD_gamma_fam gluta 99.4 2.2E-12 4.7E-17 115.8 9.1 100 4-104 74-181 (467)
11 PRK12809 putative oxidoreducta 99.4 1.8E-12 3.9E-17 120.5 8.5 100 4-104 243-350 (639)
12 COG2081 Predicted flavoprotein 99.3 6.4E-12 1.4E-16 109.4 10.1 123 62-187 2-154 (408)
13 TIGR01316 gltA glutamate synth 99.3 3E-12 6.6E-17 114.3 6.2 100 4-104 62-173 (449)
14 PF13738 Pyr_redox_3: Pyridine 99.3 7.1E-12 1.5E-16 99.2 7.4 117 67-187 1-125 (203)
15 PRK12814 putative NADPH-depend 99.3 6.2E-12 1.4E-16 117.1 6.4 100 4-104 128-233 (652)
16 TIGR01317 GOGAT_sm_gam glutama 99.3 5.5E-12 1.2E-16 113.8 5.7 99 4-103 78-182 (485)
17 PF03486 HI0933_like: HI0933-l 99.3 2.4E-11 5.1E-16 107.6 9.5 117 64-187 1-153 (409)
18 PRK12771 putative glutamate sy 99.2 1.5E-11 3.3E-16 112.7 6.9 100 4-104 73-177 (564)
19 PRK11749 dihydropyrimidine deh 99.2 1.3E-11 2.9E-16 110.2 6.0 99 4-103 74-179 (457)
20 COG0493 GltD NADPH-dependent g 99.2 4.4E-11 9.6E-16 107.1 8.7 100 5-105 57-164 (457)
21 PRK12778 putative bifunctional 99.2 2.1E-11 4.6E-16 115.2 6.5 100 4-104 363-471 (752)
22 PLN02172 flavin-containing mon 99.2 5.2E-11 1.1E-15 106.9 8.4 44 61-105 8-51 (461)
23 PRK07208 hypothetical protein; 99.2 6.3E-11 1.4E-15 106.0 8.3 72 61-135 2-73 (479)
24 PRK11883 protoporphyrinogen ox 99.2 4.1E-11 8.9E-16 105.7 6.7 63 64-129 1-65 (451)
25 PLN02268 probable polyamine ox 99.2 1E-10 2.2E-15 103.5 8.1 58 64-124 1-58 (435)
26 TIGR00562 proto_IX_ox protopor 99.2 7.5E-11 1.6E-15 104.8 7.3 67 64-133 3-73 (462)
27 PF00743 FMO-like: Flavin-bind 99.1 6.2E-11 1.3E-15 108.1 5.1 41 64-105 2-42 (531)
28 PRK07233 hypothetical protein; 99.1 1.2E-10 2.6E-15 102.0 6.6 55 65-122 1-55 (434)
29 PLN02576 protoporphyrinogen ox 99.1 1.5E-10 3.3E-15 103.9 7.3 63 62-127 11-74 (496)
30 KOG1399 Flavin-containing mono 99.1 1.3E-10 2.9E-15 103.8 6.6 117 62-184 5-133 (448)
31 PRK12416 protoporphyrinogen ox 99.1 1.4E-10 3E-15 103.5 6.3 67 64-133 2-74 (463)
32 COG2072 TrkA Predicted flavopr 99.1 5.4E-10 1.2E-14 99.9 10.1 118 60-186 5-128 (443)
33 KOG0029 Amine oxidase [Seconda 99.1 3.3E-10 7.2E-15 102.6 8.7 65 60-126 12-76 (501)
34 PRK06567 putative bifunctional 99.1 1.6E-10 3.4E-15 110.7 6.2 89 5-95 305-415 (1028)
35 PRK13984 putative oxidoreducta 99.1 1.6E-10 3.5E-15 106.6 5.8 94 9-103 222-322 (604)
36 COG1233 Phytoene dehydrogenase 99.1 3.9E-10 8.5E-15 101.8 7.4 59 62-123 2-60 (487)
37 TIGR01292 TRX_reduct thioredox 99.0 2.3E-09 5E-14 89.2 11.2 97 64-186 1-98 (300)
38 KOG0399 Glutamate synthase [Am 99.0 1.4E-09 3.1E-14 104.0 10.0 89 15-104 1731-1825(2142)
39 TIGR02733 desat_CrtD C-3',4' d 99.0 9.8E-10 2.1E-14 98.9 8.2 58 64-124 2-59 (492)
40 TIGR02731 phytoene_desat phyto 99.0 1.3E-09 2.8E-14 97.0 8.3 63 65-130 1-64 (453)
41 COG3349 Uncharacterized conser 99.0 7.6E-10 1.7E-14 99.1 6.7 72 64-137 1-72 (485)
42 TIGR02734 crtI_fam phytoene de 99.0 1.1E-09 2.3E-14 98.8 7.4 55 66-123 1-55 (502)
43 PF00070 Pyr_redox: Pyridine n 99.0 1.2E-08 2.6E-13 70.0 10.9 80 65-184 1-80 (80)
44 COG1232 HemY Protoporphyrinoge 99.0 1.3E-09 2.8E-14 97.3 7.2 69 65-136 2-72 (444)
45 PRK06753 hypothetical protein; 98.9 5.4E-09 1.2E-13 90.3 10.1 34 65-99 2-35 (373)
46 PLN02568 polyamine oxidase 98.9 3.5E-09 7.6E-14 96.9 8.8 60 62-124 4-68 (539)
47 PRK15317 alkyl hydroperoxide r 98.9 8.3E-09 1.8E-13 93.8 11.2 100 62-187 210-309 (517)
48 PRK07588 hypothetical protein; 98.9 1.2E-08 2.5E-13 89.0 11.6 33 65-98 2-34 (391)
49 COG1635 THI4 Ribulose 1,5-bisp 98.9 6.6E-09 1.4E-13 84.6 8.8 41 63-104 30-70 (262)
50 PLN02612 phytoene desaturase 98.9 8.6E-09 1.9E-13 94.8 10.6 65 61-128 91-156 (567)
51 PF01266 DAO: FAD dependent ox 98.9 5E-08 1.1E-12 82.4 14.4 31 65-95 1-31 (358)
52 TIGR00292 thiazole biosynthesi 98.9 9.6E-09 2.1E-13 85.6 9.7 41 62-103 20-60 (254)
53 TIGR02032 GG-red-SF geranylger 98.9 3.9E-08 8.5E-13 81.4 13.4 37 64-101 1-37 (295)
54 PRK07236 hypothetical protein; 98.9 2.6E-08 5.6E-13 86.9 12.8 35 61-95 4-38 (386)
55 COG1148 HdrA Heterodisulfide r 98.9 3.3E-09 7.3E-14 94.5 6.9 99 62-187 123-221 (622)
56 PF01946 Thi4: Thi4 family; PD 98.9 1.1E-08 2.3E-13 83.2 9.1 42 62-104 16-57 (230)
57 PRK01747 mnmC bifunctional tRN 98.9 6.7E-08 1.5E-12 90.3 15.7 37 63-100 260-296 (662)
58 TIGR02732 zeta_caro_desat caro 98.9 5.4E-09 1.2E-13 94.2 7.9 65 65-132 1-66 (474)
59 TIGR03140 AhpF alkyl hydropero 98.9 1.8E-08 3.9E-13 91.5 11.1 101 61-187 210-310 (515)
60 PRK09126 hypothetical protein; 98.9 1.8E-08 3.8E-13 87.7 10.4 35 63-98 3-37 (392)
61 PRK10157 putative oxidoreducta 98.9 3.1E-08 6.7E-13 88.1 11.8 38 63-101 5-42 (428)
62 PRK06847 hypothetical protein; 98.8 4.8E-08 1E-12 84.4 12.6 35 63-98 4-38 (375)
63 COG0644 FixC Dehydrogenases (f 98.8 2.3E-08 4.9E-13 87.9 10.7 41 62-103 2-42 (396)
64 PLN02487 zeta-carotene desatur 98.8 1.6E-08 3.4E-13 93.1 9.7 59 63-124 75-134 (569)
65 PRK04176 ribulose-1,5-biphosph 98.8 2.4E-08 5.1E-13 83.4 9.7 41 62-103 24-64 (257)
66 PRK05868 hypothetical protein; 98.8 5.3E-08 1.2E-12 84.9 12.0 35 64-99 2-36 (372)
67 TIGR02730 carot_isom carotene 98.8 5.7E-09 1.2E-13 94.1 6.1 44 64-108 1-44 (493)
68 PRK08163 salicylate hydroxylas 98.8 4.6E-08 1E-12 85.2 11.4 38 62-100 3-40 (396)
69 PRK10015 oxidoreductase; Provi 98.8 2.5E-08 5.5E-13 88.7 9.8 37 63-100 5-41 (429)
70 KOG0685 Flavin-containing amin 98.8 1.3E-08 2.7E-13 90.5 7.7 72 62-136 20-93 (498)
71 COG0492 TrxB Thioredoxin reduc 98.8 5.7E-08 1.2E-12 83.1 11.4 98 62-185 2-101 (305)
72 PLN02529 lysine-specific histo 98.8 1.7E-08 3.7E-13 95.2 8.9 63 61-124 158-222 (738)
73 COG0654 UbiH 2-polyprenyl-6-me 98.8 6.3E-09 1.4E-13 91.1 5.6 33 63-95 2-34 (387)
74 PRK08013 oxidoreductase; Provi 98.8 2.9E-08 6.3E-13 87.1 9.7 35 63-98 3-37 (400)
75 TIGR01988 Ubi-OHases Ubiquinon 98.8 3.8E-08 8.3E-13 84.9 10.1 34 65-99 1-34 (385)
76 PRK05714 2-octaprenyl-3-methyl 98.8 3.8E-08 8.2E-13 86.2 10.1 33 63-95 2-34 (405)
77 PRK08020 ubiF 2-octaprenyl-3-m 98.8 1.1E-07 2.3E-12 82.9 12.5 33 63-95 5-37 (391)
78 PLN02676 polyamine oxidase 98.8 2.2E-08 4.7E-13 90.6 8.4 60 61-123 24-84 (487)
79 PRK11445 putative oxidoreducta 98.8 2.9E-08 6.3E-13 85.8 8.8 33 64-98 2-34 (351)
80 PRK06834 hypothetical protein; 98.8 8.9E-08 1.9E-12 86.6 12.2 36 62-98 2-37 (488)
81 PRK07364 2-octaprenyl-6-methox 98.8 3.1E-08 6.7E-13 86.8 9.0 37 62-99 17-53 (415)
82 TIGR03219 salicylate_mono sali 98.8 5.6E-08 1.2E-12 85.6 10.6 35 65-100 2-37 (414)
83 PRK08773 2-octaprenyl-3-methyl 98.8 6.4E-08 1.4E-12 84.4 10.9 36 62-98 5-40 (392)
84 PRK06475 salicylate hydroxylas 98.8 8.3E-08 1.8E-12 84.2 11.4 35 64-99 3-37 (400)
85 PRK05732 2-octaprenyl-6-methox 98.8 1.3E-07 2.8E-12 82.2 12.4 34 62-95 2-38 (395)
86 PRK06183 mhpA 3-(3-hydroxyphen 98.8 1.6E-07 3.5E-12 85.6 13.4 39 61-100 8-46 (538)
87 PRK06184 hypothetical protein; 98.7 2.2E-07 4.8E-12 83.9 13.8 36 63-99 3-38 (502)
88 TIGR00031 UDP-GALP_mutase UDP- 98.7 3.9E-08 8.5E-13 86.3 8.4 67 64-132 2-68 (377)
89 PRK07190 hypothetical protein; 98.7 1.7E-07 3.7E-12 84.8 12.6 36 63-99 5-40 (487)
90 PRK11728 hydroxyglutarate oxid 98.7 2.9E-07 6.4E-12 80.5 13.8 37 64-101 3-41 (393)
91 TIGR01984 UbiH 2-polyprenyl-6- 98.7 1.6E-07 3.4E-12 81.4 11.9 31 65-95 1-32 (382)
92 PLN02328 lysine-specific histo 98.7 3.7E-08 8.1E-13 93.6 8.5 61 62-123 237-299 (808)
93 TIGR03143 AhpF_homolog putativ 98.7 1.2E-07 2.5E-12 87.1 11.3 40 63-104 4-43 (555)
94 PRK07494 2-octaprenyl-6-methox 98.7 6.9E-08 1.5E-12 83.9 9.4 37 62-99 6-42 (388)
95 PF05834 Lycopene_cycl: Lycope 98.7 1.4E-07 3.1E-12 82.4 11.3 34 65-99 1-36 (374)
96 PRK10262 thioredoxin reductase 98.7 1.4E-07 3E-12 80.4 10.9 42 62-105 5-46 (321)
97 PRK08849 2-octaprenyl-3-methyl 98.7 4.5E-08 9.8E-13 85.4 8.1 33 63-95 3-35 (384)
98 PRK07333 2-octaprenyl-6-methox 98.7 1.7E-07 3.7E-12 81.7 11.7 34 64-98 2-37 (403)
99 PRK07045 putative monooxygenas 98.7 2E-07 4.3E-12 81.2 11.7 36 63-99 5-40 (388)
100 COG0579 Predicted dehydrogenas 98.7 2.6E-07 5.7E-12 82.2 12.5 40 62-102 2-43 (429)
101 COG0562 Glf UDP-galactopyranos 98.7 6.3E-08 1.4E-12 82.7 8.0 73 64-137 2-75 (374)
102 TIGR01790 carotene-cycl lycope 98.7 2.4E-07 5.2E-12 80.6 11.9 37 65-102 1-37 (388)
103 PRK08850 2-octaprenyl-6-methox 98.7 1.7E-07 3.6E-12 82.3 10.7 33 63-95 4-36 (405)
104 PRK07608 ubiquinone biosynthes 98.7 4.3E-07 9.3E-12 78.8 13.2 36 63-99 5-40 (388)
105 COG2907 Predicted NAD/FAD-bind 98.7 6.2E-08 1.3E-12 83.6 6.9 71 62-134 7-80 (447)
106 TIGR00275 flavoprotein, HI0933 98.6 1.3E-07 2.9E-12 83.3 9.2 36 67-103 1-36 (400)
107 COG1231 Monoamine oxidase [Ami 98.6 7.2E-08 1.6E-12 85.5 7.2 47 61-108 5-51 (450)
108 PRK08244 hypothetical protein; 98.6 4.1E-07 9E-12 82.0 12.3 36 63-99 2-37 (493)
109 PF13454 NAD_binding_9: FAD-NA 98.6 4.9E-07 1.1E-11 69.7 10.2 118 67-188 1-145 (156)
110 PRK06617 2-octaprenyl-6-methox 98.6 4.3E-07 9.2E-12 79.1 10.6 32 64-95 2-33 (374)
111 PLN03000 amine oxidase 98.6 1.8E-07 3.8E-12 89.4 8.8 63 62-125 183-247 (881)
112 PLN02463 lycopene beta cyclase 98.6 9.1E-07 2E-11 79.4 12.7 34 62-95 27-60 (447)
113 PRK09897 hypothetical protein; 98.6 4.5E-07 9.8E-12 83.0 10.8 38 64-102 2-41 (534)
114 PRK08132 FAD-dependent oxidore 98.6 9E-07 1.9E-11 80.9 12.7 37 62-99 22-58 (547)
115 PRK08243 4-hydroxybenzoate 3-m 98.6 1E-06 2.2E-11 77.1 12.0 35 63-98 2-36 (392)
116 PRK13977 myosin-cross-reactive 98.5 2.6E-07 5.6E-12 84.8 7.8 44 62-106 21-68 (576)
117 PLN02852 ferredoxin-NADP+ redu 98.5 1.6E-07 3.4E-12 85.1 6.3 44 60-104 23-68 (491)
118 PF01494 FAD_binding_3: FAD bi 98.5 1.5E-07 3.2E-12 79.5 5.0 35 64-99 2-36 (356)
119 PRK06996 hypothetical protein; 98.5 2.8E-06 6.1E-11 74.5 12.9 35 61-95 9-47 (398)
120 TIGR01789 lycopene_cycl lycope 98.5 1.2E-06 2.7E-11 76.5 10.0 37 65-102 1-39 (370)
121 PRK05249 soluble pyridine nucl 98.5 2.6E-07 5.7E-12 82.5 5.7 41 62-103 4-44 (461)
122 KOG1276 Protoporphyrinogen oxi 98.5 4.5E-07 9.9E-12 80.0 7.0 64 62-127 10-75 (491)
123 PRK06115 dihydrolipoamide dehy 98.4 3.5E-07 7.6E-12 82.1 5.4 40 63-103 3-42 (466)
124 PLN02697 lycopene epsilon cycl 98.4 4.4E-06 9.6E-11 76.4 12.6 33 63-95 108-140 (529)
125 PLN02661 Putative thiazole syn 98.4 1.3E-06 2.9E-11 76.0 8.3 41 62-103 91-132 (357)
126 PF01593 Amino_oxidase: Flavin 98.4 9.2E-07 2E-11 75.8 7.3 62 73-135 1-62 (450)
127 PTZ00363 rab-GDP dissociation 98.4 6.5E-07 1.4E-11 80.2 6.2 45 61-106 2-46 (443)
128 PF12831 FAD_oxidored: FAD dep 98.4 4.3E-07 9.2E-12 80.8 4.9 40 65-105 1-40 (428)
129 PRK08010 pyridine nucleotide-d 98.4 5.2E-07 1.1E-11 80.2 5.5 40 63-103 3-43 (441)
130 PRK07251 pyridine nucleotide-d 98.4 5.9E-07 1.3E-11 79.8 5.6 39 63-102 3-42 (438)
131 TIGR02023 BchP-ChlP geranylger 98.3 5.1E-07 1.1E-11 78.9 4.9 32 64-95 1-32 (388)
132 TIGR01377 soxA_mon sarcosine o 98.3 6.8E-07 1.5E-11 77.3 5.6 32 64-95 1-32 (380)
133 PRK06116 glutathione reductase 98.3 6.1E-07 1.3E-11 80.0 5.4 39 63-103 4-42 (450)
134 PLN02976 amine oxidase 98.3 1E-06 2.3E-11 87.5 7.4 60 62-123 692-751 (1713)
135 PRK06416 dihydrolipoamide dehy 98.3 5.8E-07 1.3E-11 80.3 5.3 41 62-104 3-43 (462)
136 PTZ00188 adrenodoxin reductase 98.3 7.6E-07 1.6E-11 80.5 5.9 44 61-105 37-81 (506)
137 TIGR01421 gluta_reduc_1 glutat 98.3 6.3E-07 1.4E-11 80.2 5.3 39 63-103 2-40 (450)
138 TIGR01424 gluta_reduc_2 glutat 98.3 5.9E-07 1.3E-11 80.2 5.1 40 63-104 2-41 (446)
139 PRK12409 D-amino acid dehydrog 98.3 7.4E-07 1.6E-11 78.2 5.5 35 64-99 2-36 (410)
140 PRK06370 mercuric reductase; V 98.3 8E-07 1.7E-11 79.6 5.8 41 61-103 3-43 (463)
141 PRK11259 solA N-methyltryptoph 98.3 9E-07 2E-11 76.4 5.6 33 63-95 3-35 (376)
142 COG0665 DadA Glycine/D-amino a 98.3 9.3E-07 2E-11 76.4 5.6 34 62-95 3-36 (387)
143 PLN00093 geranylgeranyl diphos 98.3 8.7E-07 1.9E-11 79.5 5.6 35 61-95 37-71 (450)
144 PRK05976 dihydrolipoamide dehy 98.3 9.4E-07 2E-11 79.3 5.8 41 62-104 3-43 (472)
145 PRK13369 glycerol-3-phosphate 98.3 1.1E-06 2.3E-11 79.7 6.1 41 60-101 3-43 (502)
146 PF00890 FAD_binding_2: FAD bi 98.3 7.4E-07 1.6E-11 78.3 4.9 37 65-102 1-37 (417)
147 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 8.2E-07 1.8E-11 77.9 5.1 35 63-98 2-36 (390)
148 PRK12266 glpD glycerol-3-phosp 98.3 1.2E-06 2.5E-11 79.8 6.1 40 61-101 4-43 (508)
149 TIGR03364 HpnW_proposed FAD de 98.3 1.1E-06 2.4E-11 75.8 5.7 32 64-95 1-32 (365)
150 PRK06467 dihydrolipoamide dehy 98.3 1.1E-06 2.4E-11 79.0 5.7 41 62-103 3-43 (471)
151 TIGR02028 ChlP geranylgeranyl 98.3 1.2E-06 2.6E-11 77.2 5.5 34 64-98 1-34 (398)
152 TIGR01350 lipoamide_DH dihydro 98.3 1.2E-06 2.6E-11 78.2 5.5 38 64-103 2-39 (461)
153 PRK06185 hypothetical protein; 98.3 1.3E-06 2.8E-11 76.4 5.6 34 62-95 5-38 (407)
154 TIGR02053 MerA mercuric reduct 98.3 1.2E-06 2.7E-11 78.3 5.5 38 64-103 1-38 (463)
155 PRK08274 tricarballylate dehyd 98.2 1.6E-06 3.5E-11 77.6 5.9 40 62-102 3-44 (466)
156 PRK07538 hypothetical protein; 98.2 1.2E-06 2.7E-11 77.1 5.1 34 65-99 2-35 (413)
157 PRK06292 dihydrolipoamide dehy 98.2 1.6E-06 3.4E-11 77.4 5.7 41 62-104 2-42 (460)
158 PRK07818 dihydrolipoamide dehy 98.2 1.8E-06 3.8E-11 77.5 5.9 39 63-103 4-42 (466)
159 PRK14694 putative mercuric red 98.2 1.8E-06 3.8E-11 77.6 5.9 41 62-104 5-45 (468)
160 PRK06126 hypothetical protein; 98.2 2E-06 4.3E-11 78.5 6.1 36 62-98 6-41 (545)
161 PLN02464 glycerol-3-phosphate 98.2 3.5E-06 7.7E-11 78.5 7.7 38 63-101 71-108 (627)
162 TIGR01813 flavo_cyto_c flavocy 98.2 1.8E-06 3.9E-11 76.6 5.4 37 65-102 1-38 (439)
163 PRK00711 D-amino acid dehydrog 98.2 1.7E-06 3.6E-11 75.9 5.1 35 65-100 2-36 (416)
164 TIGR01372 soxA sarcosine oxida 98.2 1.8E-06 3.9E-11 84.2 5.6 41 63-104 163-203 (985)
165 PRK06481 fumarate reductase fl 98.2 2.3E-06 5E-11 77.7 5.9 40 62-102 60-99 (506)
166 PRK07121 hypothetical protein; 98.2 2.2E-06 4.8E-11 77.4 5.7 41 62-103 19-59 (492)
167 PRK11101 glpA sn-glycerol-3-ph 98.2 2.9E-06 6.2E-11 77.8 5.8 36 63-99 6-41 (546)
168 TIGR01373 soxB sarcosine oxida 98.2 3.5E-06 7.7E-11 73.8 6.1 36 60-95 27-64 (407)
169 PLN02507 glutathione reductase 98.1 3.3E-06 7.1E-11 76.7 5.7 45 59-103 21-73 (499)
170 TIGR01989 COQ6 Ubiquinone bios 98.1 2.6E-06 5.7E-11 75.8 4.9 32 64-95 1-36 (437)
171 PRK13748 putative mercuric red 98.1 3.1E-06 6.8E-11 77.4 5.3 41 62-104 97-137 (561)
172 PRK12770 putative glutamate sy 98.1 4.5E-06 9.7E-11 72.2 5.9 43 60-103 15-57 (352)
173 PRK14727 putative mercuric red 98.1 3.5E-06 7.6E-11 75.9 5.3 42 62-104 15-56 (479)
174 TIGR03329 Phn_aa_oxid putative 98.1 3.6E-06 7.8E-11 75.4 5.1 34 62-95 23-58 (460)
175 PRK12842 putative succinate de 98.1 4.3E-06 9.2E-11 77.1 5.6 40 62-102 8-47 (574)
176 PRK06327 dihydrolipoamide dehy 98.1 4.6E-06 1E-10 75.0 5.6 41 63-103 4-49 (475)
177 PLN02985 squalene monooxygenas 98.1 4.5E-06 9.8E-11 76.1 5.6 35 61-95 41-75 (514)
178 KOG2614 Kynurenine 3-monooxyge 98.1 4.6E-06 1E-10 73.3 5.3 38 63-101 2-39 (420)
179 PRK09564 coenzyme A disulfide 98.1 1.3E-05 2.8E-10 71.1 8.3 89 65-181 2-93 (444)
180 PLN02927 antheraxanthin epoxid 98.1 4E-06 8.8E-11 78.5 5.3 35 61-95 79-113 (668)
181 PF07992 Pyr_redox_2: Pyridine 98.1 4.6E-06 9.9E-11 65.5 4.8 31 65-95 1-31 (201)
182 PTZ00052 thioredoxin reductase 98.1 4.5E-06 9.7E-11 75.8 5.3 41 63-103 5-52 (499)
183 PRK12834 putative FAD-binding 98.1 5.9E-06 1.3E-10 75.7 5.9 41 62-103 3-45 (549)
184 PRK04965 NADH:flavorubredoxin 98.1 5.6E-05 1.2E-09 65.8 11.7 86 63-187 141-226 (377)
185 PRK12837 3-ketosteroid-delta-1 98.1 5E-06 1.1E-10 75.7 5.3 39 62-102 6-44 (513)
186 TIGR01320 mal_quin_oxido malat 98.1 4.7E-06 1E-10 75.4 5.0 34 64-98 1-36 (483)
187 PRK05335 tRNA (uracil-5-)-meth 98.1 6.1E-06 1.3E-10 73.6 5.3 35 64-99 3-37 (436)
188 PTZ00058 glutathione reductase 98.0 7.2E-06 1.6E-10 75.6 6.0 40 62-103 47-86 (561)
189 PRK09754 phenylpropionate diox 98.0 7E-05 1.5E-09 65.8 11.4 85 63-187 144-228 (396)
190 PRK05249 soluble pyridine nucl 98.0 8.7E-05 1.9E-09 66.3 12.0 84 63-186 175-258 (461)
191 PRK08294 phenol 2-monooxygenas 98.0 7.9E-06 1.7E-10 76.3 5.5 34 62-95 31-65 (634)
192 PRK08641 sdhA succinate dehydr 98.0 8.7E-06 1.9E-10 75.4 5.6 38 63-101 3-40 (589)
193 PTZ00367 squalene epoxidase; P 98.0 7.7E-06 1.7E-10 75.5 5.1 34 62-95 32-65 (567)
194 TIGR01812 sdhA_frdA_Gneg succi 98.0 8.2E-06 1.8E-10 75.0 5.3 36 65-101 1-36 (566)
195 PRK12835 3-ketosteroid-delta-1 98.0 8.8E-06 1.9E-10 75.3 5.5 40 62-102 10-49 (584)
196 PRK07804 L-aspartate oxidase; 98.0 8.9E-06 1.9E-10 74.6 5.4 39 62-101 15-53 (541)
197 PRK05192 tRNA uridine 5-carbox 98.0 9.3E-06 2E-10 75.3 5.4 40 62-101 3-42 (618)
198 PRK12839 hypothetical protein; 98.0 1.3E-05 2.8E-10 74.0 6.3 42 61-103 6-47 (572)
199 PRK09754 phenylpropionate diox 98.0 4.9E-05 1.1E-09 66.7 9.5 33 63-95 3-37 (396)
200 PRK07846 mycothione reductase; 98.0 0.00011 2.4E-09 65.9 11.6 84 63-187 166-249 (451)
201 PRK06416 dihydrolipoamide dehy 98.0 0.0001 2.2E-09 65.9 11.4 80 63-182 172-251 (462)
202 COG0446 HcaD Uncharacterized N 97.9 6.6E-05 1.4E-09 64.8 9.8 75 63-176 136-210 (415)
203 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 1.1E-05 2.4E-10 72.1 5.0 35 65-100 2-36 (433)
204 PRK05257 malate:quinone oxidor 97.9 1E-05 2.3E-10 73.4 4.9 37 62-99 4-42 (494)
205 PRK06452 sdhA succinate dehydr 97.9 1.2E-05 2.7E-10 74.0 5.4 40 62-102 4-43 (566)
206 PRK12844 3-ketosteroid-delta-1 97.9 1.3E-05 2.8E-10 73.7 5.5 39 63-102 6-44 (557)
207 PRK13512 coenzyme A disulfide 97.9 4.8E-05 1E-09 67.8 8.9 33 65-98 3-37 (438)
208 PRK07843 3-ketosteroid-delta-1 97.9 1.4E-05 2.9E-10 73.6 5.5 40 62-102 6-45 (557)
209 PRK07573 sdhA succinate dehydr 97.9 2E-05 4.4E-10 73.6 6.8 38 62-100 34-71 (640)
210 PRK07803 sdhA succinate dehydr 97.9 1.3E-05 2.8E-10 74.8 5.3 38 63-101 8-45 (626)
211 TIGR01350 lipoamide_DH dihydro 97.9 0.00013 2.8E-09 65.1 11.5 82 63-184 170-251 (461)
212 PLN02546 glutathione reductase 97.9 1.5E-05 3.3E-10 73.4 5.6 34 61-94 77-110 (558)
213 PRK07251 pyridine nucleotide-d 97.9 0.00012 2.7E-09 65.0 11.3 81 63-183 157-237 (438)
214 PRK07057 sdhA succinate dehydr 97.9 1.5E-05 3.3E-10 73.8 5.6 39 62-101 11-49 (591)
215 PTZ00139 Succinate dehydrogena 97.9 1.4E-05 3E-10 74.5 5.3 40 62-102 28-67 (617)
216 PRK08958 sdhA succinate dehydr 97.9 1.6E-05 3.4E-10 73.7 5.4 38 63-101 7-44 (588)
217 PRK09078 sdhA succinate dehydr 97.9 1.5E-05 3.3E-10 73.9 5.3 39 62-101 11-49 (598)
218 PLN00128 Succinate dehydrogena 97.9 1.6E-05 3.4E-10 74.4 5.4 39 62-101 49-87 (635)
219 PRK06912 acoL dihydrolipoamide 97.9 1.7E-05 3.6E-10 71.1 5.2 37 65-103 2-38 (458)
220 TIGR03452 mycothione_red mycot 97.9 0.00016 3.4E-09 64.9 11.5 83 63-186 169-251 (452)
221 PF00732 GMC_oxred_N: GMC oxid 97.9 1.1E-05 2.4E-10 67.6 3.8 32 64-95 1-33 (296)
222 PRK05945 sdhA succinate dehydr 97.9 1.9E-05 4.1E-10 72.9 5.3 38 63-101 3-42 (575)
223 TIGR02462 pyranose_ox pyranose 97.9 2.1E-05 4.6E-10 72.2 5.5 38 64-102 1-38 (544)
224 PRK07845 flavoprotein disulfid 97.9 0.00024 5.1E-09 63.9 12.1 83 64-186 178-260 (466)
225 PRK06134 putative FAD-binding 97.9 2.6E-05 5.7E-10 72.1 6.0 41 61-102 10-50 (581)
226 PRK06116 glutathione reductase 97.9 0.00019 4.1E-09 64.0 11.3 85 63-187 167-252 (450)
227 PRK06069 sdhA succinate dehydr 97.9 2E-05 4.3E-10 72.7 5.1 39 63-102 5-46 (577)
228 PTZ00383 malate:quinone oxidor 97.8 2.4E-05 5.3E-10 71.1 5.5 34 62-95 44-79 (497)
229 PLN02507 glutathione reductase 97.8 0.00025 5.4E-09 64.5 12.1 85 63-187 203-287 (499)
230 COG1249 Lpd Pyruvate/2-oxoglut 97.8 2.4E-05 5.2E-10 70.4 5.4 41 62-103 3-43 (454)
231 PRK08401 L-aspartate oxidase; 97.8 2E-05 4.3E-10 71.0 4.8 32 64-95 2-33 (466)
232 PRK08626 fumarate reductase fl 97.8 2.1E-05 4.6E-10 73.8 5.2 38 63-101 5-42 (657)
233 TIGR01423 trypano_reduc trypan 97.8 2.6E-05 5.5E-10 70.7 5.5 42 62-103 2-51 (486)
234 TIGR00551 nadB L-aspartate oxi 97.8 2.5E-05 5.4E-10 70.7 5.3 38 63-102 2-39 (488)
235 PLN02815 L-aspartate oxidase 97.8 2.5E-05 5.4E-10 72.5 5.2 39 62-102 28-66 (594)
236 PRK12845 3-ketosteroid-delta-1 97.8 3.1E-05 6.8E-10 71.4 5.7 41 61-103 14-54 (564)
237 PRK06175 L-aspartate oxidase; 97.8 2.4E-05 5.3E-10 69.8 4.9 38 63-102 4-41 (433)
238 PRK13339 malate:quinone oxidor 97.8 3.1E-05 6.7E-10 70.5 5.5 38 62-100 5-44 (497)
239 TIGR02053 MerA mercuric reduct 97.8 0.00028 6.1E-09 63.1 11.6 78 64-181 167-244 (463)
240 PRK08255 salicylyl-CoA 5-hydro 97.8 2.4E-05 5.3E-10 74.5 5.0 33 65-98 2-36 (765)
241 TIGR01424 gluta_reduc_2 glutat 97.8 0.00028 6E-09 63.0 11.5 83 63-185 166-248 (446)
242 PRK07395 L-aspartate oxidase; 97.8 2.8E-05 6.1E-10 71.6 5.2 39 62-102 8-46 (553)
243 PTZ00153 lipoamide dehydrogena 97.8 3E-05 6.5E-10 72.7 5.5 41 63-103 116-156 (659)
244 PTZ00306 NADH-dependent fumara 97.8 3E-05 6.5E-10 77.0 5.6 41 62-103 408-448 (1167)
245 PRK06854 adenylylsulfate reduc 97.8 2.8E-05 6E-10 72.3 5.1 35 63-98 11-47 (608)
246 PRK07845 flavoprotein disulfid 97.8 3.8E-05 8.2E-10 69.1 5.5 39 64-104 2-40 (466)
247 PRK06912 acoL dihydrolipoamide 97.8 0.00036 7.8E-09 62.5 11.6 81 63-183 170-250 (458)
248 PRK08071 L-aspartate oxidase; 97.8 3.7E-05 7.9E-10 70.1 5.2 38 63-102 3-40 (510)
249 PRK08275 putative oxidoreducta 97.8 3.6E-05 7.9E-10 70.7 5.2 36 62-98 8-45 (554)
250 TIGR01438 TGR thioredoxin and 97.8 4.2E-05 9.1E-10 69.3 5.4 32 63-94 2-33 (484)
251 TIGR01421 gluta_reduc_1 glutat 97.7 0.00044 9.6E-09 61.9 11.9 82 63-184 166-248 (450)
252 PRK06370 mercuric reductase; V 97.7 0.00046 9.9E-09 61.9 11.9 77 63-179 171-247 (463)
253 PRK06263 sdhA succinate dehydr 97.7 3.9E-05 8.4E-10 70.3 5.1 39 62-102 6-45 (543)
254 COG0578 GlpA Glycerol-3-phosph 97.7 4.7E-05 1E-09 69.5 5.5 40 62-102 11-50 (532)
255 PRK12843 putative FAD-binding 97.7 4.9E-05 1.1E-09 70.3 5.6 41 62-103 15-55 (578)
256 PRK05329 anaerobic glycerol-3- 97.7 4.5E-05 9.9E-10 68.0 5.1 33 63-95 2-34 (422)
257 PRK09231 fumarate reductase fl 97.7 4E-05 8.6E-10 70.9 4.9 39 63-102 4-44 (582)
258 COG4529 Uncharacterized protei 97.7 0.00027 5.9E-09 63.5 9.9 40 64-104 2-44 (474)
259 TIGR01176 fum_red_Fp fumarate 97.7 4.2E-05 9E-10 70.8 4.9 39 63-102 3-43 (580)
260 COG1249 Lpd Pyruvate/2-oxoglut 97.7 0.00026 5.5E-09 63.8 9.8 82 63-184 173-254 (454)
261 PRK07818 dihydrolipoamide dehy 97.7 0.00055 1.2E-08 61.4 11.9 79 63-181 172-250 (466)
262 PRK05976 dihydrolipoamide dehy 97.7 0.00048 1E-08 61.9 11.4 33 63-95 180-212 (472)
263 PF01134 GIDA: Glucose inhibit 97.7 3.6E-05 7.9E-10 67.9 4.1 37 65-101 1-37 (392)
264 PRK13748 putative mercuric red 97.7 0.00039 8.4E-09 63.7 10.8 80 63-183 270-349 (561)
265 PRK06327 dihydrolipoamide dehy 97.7 0.00061 1.3E-08 61.4 11.8 79 63-181 183-261 (475)
266 PRK08010 pyridine nucleotide-d 97.7 0.00061 1.3E-08 60.6 11.7 81 63-183 158-238 (441)
267 PRK14727 putative mercuric red 97.7 0.00043 9.4E-09 62.4 10.8 80 64-184 189-268 (479)
268 PRK02106 choline dehydrogenase 97.7 5.7E-05 1.2E-09 69.4 5.2 34 62-95 4-38 (560)
269 PRK06115 dihydrolipoamide dehy 97.7 0.00049 1.1E-08 61.9 10.9 78 63-180 174-251 (466)
270 PRK09077 L-aspartate oxidase; 97.7 6.1E-05 1.3E-09 69.0 5.2 39 62-102 7-45 (536)
271 TIGR01811 sdhA_Bsu succinate d 97.7 5E-05 1.1E-09 70.6 4.6 34 66-100 1-34 (603)
272 PRK08205 sdhA succinate dehydr 97.7 6.4E-05 1.4E-09 69.6 5.2 37 63-101 5-41 (583)
273 PRK14694 putative mercuric red 97.6 0.00056 1.2E-08 61.5 10.9 81 63-184 178-258 (468)
274 KOG2415 Electron transfer flav 97.6 6E-05 1.3E-09 66.9 4.4 44 62-106 75-124 (621)
275 TIGR02061 aprA adenosine phosp 97.6 8.2E-05 1.8E-09 69.3 5.2 31 65-95 1-35 (614)
276 TIGR03467 HpnE squalene-associ 97.6 0.00011 2.4E-09 63.8 5.8 57 77-134 1-57 (419)
277 PTZ00052 thioredoxin reductase 97.6 0.00083 1.8E-08 61.1 11.0 81 64-185 183-263 (499)
278 COG3075 GlpB Anaerobic glycero 97.6 0.00011 2.3E-09 63.5 4.8 33 63-95 2-34 (421)
279 COG1053 SdhA Succinate dehydro 97.6 0.00011 2.4E-09 67.8 5.3 40 62-102 5-44 (562)
280 KOG1298 Squalene monooxygenase 97.5 0.0001 2.2E-09 64.8 4.5 34 62-95 44-77 (509)
281 PF06039 Mqo: Malate:quinone o 97.5 0.0008 1.7E-08 60.5 10.1 38 62-100 2-41 (488)
282 PRK09564 coenzyme A disulfide 97.5 0.0009 1.9E-08 59.4 10.5 82 63-183 149-230 (444)
283 PRK04965 NADH:flavorubredoxin 97.5 0.00057 1.2E-08 59.5 9.1 32 64-95 3-36 (377)
284 PF13434 K_oxygenase: L-lysine 97.5 0.00018 4E-09 62.4 5.8 111 64-181 3-136 (341)
285 PRK06467 dihydrolipoamide dehy 97.5 0.00099 2.2E-08 60.0 10.6 77 64-181 175-251 (471)
286 TIGR02374 nitri_red_nirB nitri 97.5 0.00083 1.8E-08 64.4 10.3 85 63-186 140-224 (785)
287 KOG2820 FAD-dependent oxidored 97.5 0.00014 2.9E-09 62.9 4.3 34 62-95 6-39 (399)
288 PRK13800 putative oxidoreducta 97.5 0.00014 3E-09 70.6 4.8 34 62-95 12-45 (897)
289 TIGR01438 TGR thioredoxin and 97.5 0.0012 2.6E-08 59.8 10.5 77 64-181 181-257 (484)
290 KOG0404 Thioredoxin reductase 97.4 0.00093 2E-08 55.1 8.6 44 63-106 8-54 (322)
291 TIGR03385 CoA_CoA_reduc CoA-di 97.4 0.0016 3.4E-08 57.6 10.7 33 63-95 137-169 (427)
292 PRK07512 L-aspartate oxidase; 97.4 0.00017 3.7E-09 65.7 4.6 34 62-98 8-41 (513)
293 TIGR01810 betA choline dehydro 97.4 0.00015 3.2E-09 66.3 4.1 31 65-95 1-32 (532)
294 TIGR01423 trypano_reduc trypan 97.4 0.0022 4.7E-08 58.2 11.4 33 63-95 187-222 (486)
295 COG3573 Predicted oxidoreducta 97.4 0.00026 5.6E-09 61.5 5.0 41 63-103 5-46 (552)
296 TIGR03378 glycerol3P_GlpB glyc 97.4 0.00025 5.3E-09 63.3 4.8 32 64-95 1-32 (419)
297 PRK13512 coenzyme A disulfide 97.3 0.0019 4.1E-08 57.6 10.2 33 63-95 148-180 (438)
298 PRK07846 mycothione reductase; 97.3 0.0003 6.6E-09 63.0 5.1 37 64-104 2-38 (451)
299 TIGR00136 gidA glucose-inhibit 97.3 0.00033 7.1E-09 65.1 5.3 38 64-102 1-38 (617)
300 TIGR03452 mycothione_red mycot 97.3 0.00031 6.6E-09 63.0 5.0 38 63-104 2-39 (452)
301 PRK06292 dihydrolipoamide dehy 97.3 0.0025 5.5E-08 56.9 10.8 33 63-95 169-201 (460)
302 PF04820 Trp_halogenase: Trypt 97.3 0.00027 5.8E-09 63.6 4.4 31 65-95 1-34 (454)
303 PRK14989 nitrite reductase sub 97.3 0.0013 2.9E-08 63.5 9.2 36 63-99 3-42 (847)
304 COG2303 BetA Choline dehydroge 97.3 0.00031 6.8E-09 64.6 4.7 35 61-95 5-39 (542)
305 PLN02546 glutathione reductase 97.3 0.0043 9.3E-08 57.4 12.1 82 63-184 252-334 (558)
306 KOG1800 Ferredoxin/adrenodoxin 97.3 0.00042 9.2E-09 60.8 5.1 41 63-104 20-62 (468)
307 TIGR02485 CobZ_N-term precorri 97.3 0.00026 5.6E-09 62.9 3.7 34 68-102 1-36 (432)
308 TIGR02374 nitri_red_nirB nitri 97.2 0.001 2.3E-08 63.7 8.0 33 66-99 1-36 (785)
309 PRK14989 nitrite reductase sub 97.2 0.0029 6.2E-08 61.2 10.7 33 63-95 145-177 (847)
310 PTZ00058 glutathione reductase 97.2 0.0038 8.3E-08 57.7 10.5 33 63-95 237-269 (561)
311 PTZ00318 NADH dehydrogenase-li 97.1 0.00062 1.3E-08 60.5 4.8 35 61-95 8-42 (424)
312 COG3634 AhpF Alkyl hydroperoxi 97.0 0.00087 1.9E-08 58.5 4.4 39 62-103 210-248 (520)
313 PTZ00153 lipoamide dehydrogena 97.0 0.0066 1.4E-07 57.2 10.6 33 63-95 312-344 (659)
314 PTZ00318 NADH dehydrogenase-li 97.0 0.0078 1.7E-07 53.5 10.4 32 64-95 174-219 (424)
315 PLN02785 Protein HOTHEAD 97.0 0.00091 2E-08 62.1 4.5 33 62-95 54-86 (587)
316 PF01210 NAD_Gly3P_dh_N: NAD-d 97.0 0.0011 2.3E-08 51.2 4.2 31 65-95 1-31 (157)
317 COG1206 Gid NAD(FAD)-utilizing 97.0 0.00079 1.7E-08 58.3 3.7 33 63-95 3-35 (439)
318 KOG1335 Dihydrolipoamide dehyd 96.9 0.0011 2.3E-08 58.5 4.5 41 62-103 38-78 (506)
319 KOG4254 Phytoene desaturase [C 96.9 0.0009 1.9E-08 60.0 3.9 44 61-105 12-55 (561)
320 KOG2852 Possible oxidoreductas 96.9 0.00046 9.9E-09 58.7 1.8 39 62-101 9-53 (380)
321 KOG2404 Fumarate reductase, fl 96.8 0.0016 3.5E-08 56.4 4.5 38 65-103 11-48 (477)
322 TIGR03169 Nterm_to_SelD pyridi 96.8 0.0016 3.4E-08 56.3 4.5 31 65-95 1-34 (364)
323 KOG2853 Possible oxidoreductas 96.8 0.0015 3.3E-08 56.9 3.9 34 62-95 85-122 (509)
324 PRK01438 murD UDP-N-acetylmura 96.7 0.0022 4.8E-08 57.7 5.1 34 62-95 15-48 (480)
325 COG0029 NadB Aspartate oxidase 96.7 0.0013 2.9E-08 59.3 3.5 30 65-95 9-38 (518)
326 PF02737 3HCDH_N: 3-hydroxyacy 96.6 0.003 6.5E-08 49.9 4.6 31 65-95 1-31 (180)
327 PRK02705 murD UDP-N-acetylmura 96.6 0.0026 5.5E-08 56.9 4.7 31 65-95 2-32 (459)
328 KOG1335 Dihydrolipoamide dehyd 96.6 0.0052 1.1E-07 54.3 6.4 79 63-181 211-290 (506)
329 TIGR01292 TRX_reduct thioredox 96.6 0.035 7.5E-07 45.9 10.9 34 62-95 140-173 (300)
330 TIGR01316 gltA glutamate synth 96.6 0.0084 1.8E-07 53.7 7.5 34 62-95 271-304 (449)
331 COG1252 Ndh NADH dehydrogenase 96.5 0.01 2.2E-07 52.8 7.6 24 63-86 155-178 (405)
332 PF00996 GDI: GDP dissociation 96.5 0.0041 9E-08 55.8 4.9 46 61-107 2-47 (438)
333 PRK14106 murD UDP-N-acetylmura 96.4 0.0053 1.1E-07 54.7 5.1 34 62-95 4-37 (450)
334 KOG2665 Predicted FAD-dependen 96.3 0.0031 6.8E-08 54.4 3.0 38 62-100 47-86 (453)
335 PF02558 ApbA: Ketopantoate re 96.3 0.008 1.7E-07 45.3 5.0 30 66-95 1-30 (151)
336 KOG2960 Protein involved in th 96.3 0.0013 2.8E-08 54.0 0.4 40 62-102 75-116 (328)
337 KOG3855 Monooxygenase involved 96.2 0.034 7.5E-07 49.5 9.1 34 62-95 35-72 (481)
338 PRK06129 3-hydroxyacyl-CoA deh 96.2 0.0071 1.5E-07 51.5 4.6 31 65-95 4-34 (308)
339 COG0569 TrkA K+ transport syst 96.2 0.0077 1.7E-07 49.3 4.6 31 65-95 2-32 (225)
340 PRK11749 dihydropyrimidine deh 96.2 0.027 5.9E-07 50.5 8.5 34 62-95 272-306 (457)
341 PF13738 Pyr_redox_3: Pyridine 96.2 0.0078 1.7E-07 47.2 4.5 34 62-95 166-199 (203)
342 COG1252 Ndh NADH dehydrogenase 96.2 0.0083 1.8E-07 53.4 5.0 33 63-95 3-37 (405)
343 PRK07530 3-hydroxybutyryl-CoA 96.2 0.0097 2.1E-07 50.2 5.3 33 63-95 4-36 (292)
344 PF03721 UDPG_MGDP_dh_N: UDP-g 96.1 0.006 1.3E-07 48.5 3.6 31 65-95 2-32 (185)
345 PRK09260 3-hydroxybutyryl-CoA 96.1 0.0087 1.9E-07 50.4 4.7 32 64-95 2-33 (288)
346 KOG4716 Thioredoxin reductase 96.1 0.0074 1.6E-07 52.7 4.1 35 60-94 16-50 (503)
347 PRK08293 3-hydroxybutyryl-CoA 96.0 0.01 2.2E-07 50.0 4.8 32 64-95 4-35 (287)
348 PRK07066 3-hydroxybutyryl-CoA 96.0 0.013 2.9E-07 50.5 5.5 33 63-95 7-39 (321)
349 KOG0042 Glycerol-3-phosphate d 96.0 0.0032 6.8E-08 57.7 1.6 40 62-102 66-105 (680)
350 KOG1336 Monodehydroascorbate/f 96.0 0.11 2.3E-06 47.0 11.1 85 63-186 213-299 (478)
351 PF06100 Strep_67kDa_ant: Stre 96.0 0.011 2.3E-07 53.7 4.9 41 63-104 2-46 (500)
352 PRK07819 3-hydroxybutyryl-CoA 96.0 0.011 2.4E-07 50.0 4.7 32 64-95 6-37 (286)
353 PF13241 NAD_binding_7: Putati 95.9 0.0085 1.8E-07 42.9 3.3 34 62-95 6-39 (103)
354 TIGR01470 cysG_Nterm siroheme 95.9 0.015 3.2E-07 47.0 5.1 34 62-95 8-41 (205)
355 COG2509 Uncharacterized FAD-de 95.9 0.079 1.7E-06 47.7 9.8 35 61-95 16-55 (486)
356 PRK12814 putative NADPH-depend 95.8 0.04 8.8E-07 51.8 8.3 34 62-95 322-356 (652)
357 PRK06719 precorrin-2 dehydroge 95.8 0.018 3.8E-07 44.6 4.9 33 62-94 12-44 (157)
358 PF13434 K_oxygenase: L-lysine 95.8 0.033 7.1E-07 48.4 7.0 35 61-95 188-224 (341)
359 PRK06035 3-hydroxyacyl-CoA deh 95.8 0.015 3.3E-07 49.0 4.8 32 64-95 4-35 (291)
360 TIGR03169 Nterm_to_SelD pyridi 95.7 0.089 1.9E-06 45.3 9.5 31 63-93 145-181 (364)
361 PF01488 Shikimate_DH: Shikima 95.7 0.024 5.3E-07 42.5 5.1 34 62-95 11-45 (135)
362 PF01262 AlaDh_PNT_C: Alanine 95.7 0.02 4.3E-07 44.5 4.8 34 62-95 19-52 (168)
363 KOG1238 Glucose dehydrogenase/ 95.6 0.015 3.3E-07 54.0 4.6 39 60-99 54-93 (623)
364 TIGR03140 AhpF alkyl hydropero 95.6 0.018 4E-07 52.5 5.1 34 62-95 351-384 (515)
365 PRK10262 thioredoxin reductase 95.6 0.022 4.7E-07 48.4 5.1 34 62-95 145-178 (321)
366 PRK12921 2-dehydropantoate 2-r 95.6 0.018 3.8E-07 48.5 4.5 30 65-94 2-31 (305)
367 PRK06522 2-dehydropantoate 2-r 95.6 0.019 4.1E-07 48.2 4.6 31 65-95 2-32 (304)
368 PLN02545 3-hydroxybutyryl-CoA 95.6 0.024 5.3E-07 47.8 5.2 33 63-95 4-36 (295)
369 PRK06249 2-dehydropantoate 2-r 95.5 0.024 5.2E-07 48.3 5.1 32 64-95 6-37 (313)
370 PRK12831 putative oxidoreducta 95.5 0.025 5.4E-07 51.0 5.3 35 61-95 279-313 (464)
371 PRK06718 precorrin-2 dehydroge 95.4 0.029 6.3E-07 45.2 5.0 34 62-95 9-42 (202)
372 COG0445 GidA Flavin-dependent 95.4 0.018 4E-07 52.9 4.2 33 63-95 4-36 (621)
373 KOG0405 Pyridine nucleotide-di 95.4 0.024 5.1E-07 49.7 4.7 43 61-104 18-60 (478)
374 TIGR03143 AhpF_homolog putativ 95.4 0.024 5.2E-07 52.3 5.0 34 62-95 142-175 (555)
375 PRK11064 wecC UDP-N-acetyl-D-m 95.4 0.025 5.5E-07 50.4 4.9 32 64-95 4-35 (415)
376 KOG2844 Dimethylglycine dehydr 95.4 0.026 5.6E-07 53.0 5.0 44 60-103 36-80 (856)
377 PRK06130 3-hydroxybutyryl-CoA 95.3 0.032 6.9E-07 47.4 5.3 32 64-95 5-36 (311)
378 PRK05808 3-hydroxybutyryl-CoA 95.3 0.026 5.6E-07 47.4 4.6 32 64-95 4-35 (282)
379 PRK08229 2-dehydropantoate 2-r 95.3 0.025 5.5E-07 48.5 4.5 31 65-95 4-34 (341)
380 PRK15317 alkyl hydroperoxide r 95.3 0.029 6.2E-07 51.2 5.1 34 62-95 350-383 (517)
381 PRK12810 gltD glutamate syntha 95.2 0.13 2.7E-06 46.5 8.9 34 62-95 280-314 (471)
382 TIGR02354 thiF_fam2 thiamine b 95.1 0.041 8.9E-07 44.3 5.0 34 62-95 20-54 (200)
383 PRK01710 murD UDP-N-acetylmura 95.1 0.032 6.9E-07 50.1 4.8 33 63-95 14-46 (458)
384 PRK05708 2-dehydropantoate 2-r 95.1 0.033 7.1E-07 47.5 4.6 32 64-95 3-34 (305)
385 TIGR00518 alaDH alanine dehydr 95.0 0.04 8.8E-07 48.4 5.1 34 62-95 166-199 (370)
386 PRK03369 murD UDP-N-acetylmura 95.0 0.037 8E-07 50.3 5.0 34 62-95 11-44 (488)
387 PRK12770 putative glutamate sy 95.0 0.038 8.2E-07 47.7 4.7 34 62-95 171-205 (352)
388 PRK02472 murD UDP-N-acetylmura 95.0 0.038 8.1E-07 49.2 4.8 33 63-95 5-37 (447)
389 cd01080 NAD_bind_m-THF_DH_Cycl 94.9 0.049 1.1E-06 42.7 4.8 35 61-95 42-77 (168)
390 TIGR01763 MalateDH_bact malate 94.9 0.043 9.3E-07 47.0 4.7 32 64-95 2-34 (305)
391 PF00899 ThiF: ThiF family; I 94.9 0.043 9.3E-07 40.9 4.2 33 63-95 2-35 (135)
392 cd01075 NAD_bind_Leu_Phe_Val_D 94.8 0.055 1.2E-06 43.5 5.0 34 62-95 27-60 (200)
393 TIGR03026 NDP-sugDHase nucleot 94.8 0.036 7.9E-07 49.1 4.3 31 65-95 2-32 (411)
394 PRK14618 NAD(P)H-dependent gly 94.8 0.056 1.2E-06 46.3 5.3 31 65-95 6-36 (328)
395 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.8 0.043 9.3E-07 50.2 4.8 33 63-95 5-37 (503)
396 PRK14620 NAD(P)H-dependent gly 94.8 0.045 9.7E-07 46.8 4.6 31 65-95 2-32 (326)
397 PRK04308 murD UDP-N-acetylmura 94.8 0.053 1.1E-06 48.4 5.2 33 63-95 5-37 (445)
398 cd00401 AdoHcyase S-adenosyl-L 94.8 0.051 1.1E-06 48.6 5.0 34 62-95 201-234 (413)
399 PRK00094 gpsA NAD(P)H-dependen 94.7 0.05 1.1E-06 46.1 4.8 31 65-95 3-33 (325)
400 PRK08268 3-hydroxy-acyl-CoA de 94.7 0.054 1.2E-06 49.6 5.2 33 63-95 7-39 (507)
401 PRK09424 pntA NAD(P) transhydr 94.7 0.054 1.2E-06 49.6 5.1 34 62-95 164-197 (509)
402 PF03446 NAD_binding_2: NAD bi 94.7 0.057 1.2E-06 41.6 4.6 31 65-95 3-33 (163)
403 COG3634 AhpF Alkyl hydroperoxi 94.6 0.033 7.1E-07 48.9 3.3 36 59-94 350-385 (520)
404 PRK04690 murD UDP-N-acetylmura 94.6 0.048 1E-06 49.2 4.6 33 63-95 8-40 (468)
405 COG0771 MurD UDP-N-acetylmuram 94.6 0.045 9.8E-07 49.3 4.3 36 63-99 7-42 (448)
406 PRK04148 hypothetical protein; 94.6 0.043 9.2E-07 41.6 3.5 32 63-95 17-48 (134)
407 PRK14619 NAD(P)H-dependent gly 94.5 0.067 1.4E-06 45.6 5.1 32 64-95 5-36 (308)
408 PRK07531 bifunctional 3-hydrox 94.5 0.064 1.4E-06 48.9 5.2 32 64-95 5-36 (495)
409 cd05292 LDH_2 A subgroup of L- 94.5 0.059 1.3E-06 46.1 4.7 31 65-95 2-34 (308)
410 TIGR02437 FadB fatty oxidation 94.4 0.084 1.8E-06 50.3 6.0 34 62-95 312-345 (714)
411 PRK08306 dipicolinate synthase 94.4 0.074 1.6E-06 45.3 5.1 34 62-95 151-184 (296)
412 PRK00141 murD UDP-N-acetylmura 94.4 0.065 1.4E-06 48.4 5.0 34 62-95 14-47 (473)
413 COG1004 Ugd Predicted UDP-gluc 94.4 0.056 1.2E-06 47.9 4.3 31 65-95 2-32 (414)
414 PF02254 TrkA_N: TrkA-N domain 94.4 0.097 2.1E-06 37.5 5.0 30 66-95 1-30 (116)
415 PRK12549 shikimate 5-dehydroge 94.4 0.074 1.6E-06 45.0 4.9 34 62-95 126-160 (284)
416 KOG2311 NAD/FAD-utilizing prot 94.3 0.055 1.2E-06 49.3 4.2 35 61-95 26-60 (679)
417 PRK11730 fadB multifunctional 94.3 0.058 1.3E-06 51.4 4.6 33 63-95 313-345 (715)
418 TIGR01318 gltD_gamma_fam gluta 94.3 0.24 5.1E-06 44.8 8.4 34 62-95 281-315 (467)
419 PRK12475 thiamine/molybdopteri 94.3 0.078 1.7E-06 46.1 5.1 34 62-95 23-57 (338)
420 TIGR01372 soxA sarcosine oxida 94.3 0.32 7E-06 48.0 9.8 34 62-95 316-350 (985)
421 PRK12769 putative oxidoreducta 94.3 0.16 3.4E-06 47.8 7.3 34 62-95 467-501 (654)
422 PRK12778 putative bifunctional 94.3 0.071 1.5E-06 50.9 5.1 35 61-95 568-603 (752)
423 PRK07417 arogenate dehydrogena 94.1 0.074 1.6E-06 44.6 4.4 31 65-95 2-32 (279)
424 cd05291 HicDH_like L-2-hydroxy 94.1 0.09 1.9E-06 44.8 4.9 31 65-95 2-34 (306)
425 TIGR02853 spore_dpaA dipicolin 94.1 0.093 2E-06 44.5 5.0 34 62-95 150-183 (287)
426 KOG1336 Monodehydroascorbate/f 94.1 0.31 6.7E-06 44.1 8.4 33 63-95 74-108 (478)
427 KOG3923 D-aspartate oxidase [A 94.0 0.053 1.1E-06 46.5 3.3 31 63-93 3-40 (342)
428 PRK00683 murD UDP-N-acetylmura 93.9 0.088 1.9E-06 46.7 4.7 33 63-95 3-35 (418)
429 TIGR01505 tartro_sem_red 2-hyd 93.9 0.084 1.8E-06 44.4 4.4 31 65-95 1-31 (291)
430 TIGR00936 ahcY adenosylhomocys 93.9 0.1 2.2E-06 46.5 5.0 35 61-95 193-227 (406)
431 PF00670 AdoHcyase_NAD: S-aden 93.9 0.088 1.9E-06 41.1 4.0 35 61-95 21-55 (162)
432 TIGR02441 fa_ox_alpha_mit fatt 93.8 0.093 2E-06 50.2 5.0 34 62-95 334-367 (737)
433 cd05311 NAD_bind_2_malic_enz N 93.8 0.1 2.3E-06 42.7 4.7 34 62-95 24-60 (226)
434 TIGR03197 MnmC_Cterm tRNA U-34 93.8 0.94 2E-05 39.3 10.9 28 158-185 148-175 (381)
435 PRK00421 murC UDP-N-acetylmura 93.8 0.076 1.6E-06 47.7 4.1 34 62-95 6-40 (461)
436 PRK01368 murD UDP-N-acetylmura 93.8 0.089 1.9E-06 47.4 4.5 33 62-95 5-37 (454)
437 cd05191 NAD_bind_amino_acid_DH 93.7 0.16 3.5E-06 34.9 4.9 33 62-94 22-55 (86)
438 PRK02006 murD UDP-N-acetylmura 93.7 0.091 2E-06 47.7 4.5 33 63-95 7-39 (498)
439 PRK07688 thiamine/molybdopteri 93.7 0.13 2.8E-06 44.7 5.2 34 62-95 23-57 (339)
440 PTZ00082 L-lactate dehydrogena 93.7 0.16 3.5E-06 43.8 5.7 33 63-95 6-39 (321)
441 PRK15116 sulfur acceptor prote 93.6 0.14 3.1E-06 43.2 5.2 34 62-95 29-63 (268)
442 TIGR02356 adenyl_thiF thiazole 93.6 0.15 3.2E-06 41.0 5.1 34 62-95 20-54 (202)
443 cd01078 NAD_bind_H4MPT_DH NADP 93.6 0.14 3.1E-06 40.4 5.0 34 62-95 27-61 (194)
444 KOG4405 GDP dissociation inhib 93.6 0.097 2.1E-06 46.8 4.3 47 61-108 6-52 (547)
445 COG1748 LYS9 Saccharopine dehy 93.6 0.11 2.4E-06 46.0 4.7 32 64-95 2-34 (389)
446 PRK06223 malate dehydrogenase; 93.6 0.13 2.9E-06 43.6 5.1 32 64-95 3-35 (307)
447 TIGR00507 aroE shikimate 5-deh 93.6 0.13 2.8E-06 42.9 5.0 34 62-95 116-149 (270)
448 PRK15057 UDP-glucose 6-dehydro 93.6 0.1 2.2E-06 46.3 4.4 30 65-95 2-31 (388)
449 cd01487 E1_ThiF_like E1_ThiF_l 93.5 0.15 3.2E-06 40.1 4.8 31 65-95 1-32 (174)
450 PRK12548 shikimate 5-dehydroge 93.4 0.15 3.2E-06 43.3 5.0 34 62-95 125-159 (289)
451 PRK12779 putative bifunctional 93.4 0.12 2.5E-06 50.9 4.9 34 62-95 446-479 (944)
452 cd01065 NAD_bind_Shikimate_DH 93.4 0.17 3.8E-06 38.0 4.9 34 62-95 18-52 (155)
453 TIGR00561 pntA NAD(P) transhyd 93.4 0.14 3E-06 47.0 5.1 34 62-95 163-196 (511)
454 PRK11154 fadJ multifunctional 93.4 0.11 2.4E-06 49.5 4.5 34 62-95 308-342 (708)
455 cd01483 E1_enzyme_family Super 93.4 0.17 3.8E-06 37.9 4.9 31 65-95 1-32 (143)
456 TIGR01915 npdG NADPH-dependent 93.3 0.15 3.2E-06 41.3 4.7 31 65-95 2-33 (219)
457 PRK05476 S-adenosyl-L-homocyst 93.3 0.14 3.1E-06 45.9 5.0 34 62-95 211-244 (425)
458 PRK08644 thiamine biosynthesis 93.3 0.17 3.8E-06 41.0 5.0 34 62-95 27-61 (212)
459 PRK07502 cyclohexadienyl dehyd 93.2 0.17 3.7E-06 42.9 5.1 33 63-95 6-40 (307)
460 PRK15461 NADH-dependent gamma- 93.1 0.15 3.2E-06 43.3 4.6 31 65-95 3-33 (296)
461 COG1250 FadB 3-hydroxyacyl-CoA 93.1 0.13 2.9E-06 44.2 4.3 33 63-95 3-35 (307)
462 TIGR02440 FadJ fatty oxidation 93.1 0.13 2.9E-06 48.8 4.7 33 63-95 304-337 (699)
463 PF13478 XdhC_C: XdhC Rossmann 93.0 0.12 2.5E-06 39.2 3.4 30 66-95 1-30 (136)
464 PRK01390 murD UDP-N-acetylmura 93.0 0.14 2.9E-06 46.0 4.4 33 63-95 9-41 (460)
465 TIGR03315 Se_ygfK putative sel 93.0 0.56 1.2E-05 46.5 8.9 34 62-95 665-700 (1012)
466 TIGR03376 glycerol3P_DH glycer 93.0 0.16 3.4E-06 44.3 4.6 30 65-94 1-38 (342)
467 PLN02172 flavin-containing mon 93.0 0.12 2.7E-06 46.6 4.1 34 62-95 203-236 (461)
468 PRK05562 precorrin-2 dehydroge 93.0 0.19 4.1E-06 41.3 4.8 33 62-94 24-56 (223)
469 PRK00066 ldh L-lactate dehydro 92.9 0.22 4.7E-06 42.9 5.4 33 63-95 6-40 (315)
470 cd01339 LDH-like_MDH L-lactate 92.9 0.16 3.5E-06 43.1 4.5 30 66-95 1-31 (300)
471 KOG2755 Oxidoreductase [Genera 92.9 0.031 6.6E-07 47.2 0.1 30 66-95 2-33 (334)
472 PRK00258 aroE shikimate 5-dehy 92.9 0.2 4.4E-06 42.1 5.0 34 62-95 122-156 (278)
473 PRK11199 tyrA bifunctional cho 92.9 0.18 3.8E-06 44.4 4.8 34 62-95 97-131 (374)
474 COG3486 IucD Lysine/ornithine 92.8 0.65 1.4E-05 41.5 8.2 37 61-98 3-40 (436)
475 TIGR02964 xanthine_xdhC xanthi 92.8 0.19 4.1E-06 41.8 4.7 34 62-95 99-132 (246)
476 PRK09496 trkA potassium transp 92.8 0.2 4.2E-06 44.5 5.1 34 62-95 230-263 (453)
477 PRK03803 murD UDP-N-acetylmura 92.8 0.19 4E-06 44.9 4.9 33 63-95 6-38 (448)
478 TIGR02355 moeB molybdopterin s 92.7 0.23 5E-06 41.0 5.1 34 62-95 23-57 (240)
479 COG2072 TrkA Predicted flavopr 92.7 0.16 3.5E-06 45.7 4.4 35 61-95 173-207 (443)
480 KOG2304 3-hydroxyacyl-CoA dehy 92.7 0.14 3E-06 42.4 3.6 35 61-95 9-43 (298)
481 PLN02353 probable UDP-glucose 92.6 0.18 3.8E-06 45.9 4.6 31 65-95 3-35 (473)
482 PF00056 Ldh_1_N: lactate/mala 92.6 0.27 5.8E-06 37.2 4.9 31 65-95 2-35 (141)
483 PRK11559 garR tartronate semia 92.5 0.19 4.2E-06 42.2 4.5 31 65-95 4-34 (296)
484 TIGR00872 gnd_rel 6-phosphoglu 92.5 0.2 4.3E-06 42.5 4.6 31 65-95 2-32 (298)
485 PRK05690 molybdopterin biosynt 92.5 0.25 5.3E-06 40.9 5.0 34 62-95 31-65 (245)
486 cd00757 ThiF_MoeB_HesA_family 92.4 0.26 5.6E-06 40.2 5.0 34 62-95 20-54 (228)
487 PLN02494 adenosylhomocysteinas 92.3 0.25 5.3E-06 44.9 5.1 34 62-95 253-286 (477)
488 PRK09496 trkA potassium transp 92.3 0.21 4.5E-06 44.4 4.6 31 65-95 2-32 (453)
489 PRK08017 oxidoreductase; Provi 92.3 0.25 5.5E-06 39.8 4.8 32 64-95 3-35 (256)
490 TIGR01087 murD UDP-N-acetylmur 92.3 0.2 4.3E-06 44.4 4.5 31 65-95 1-31 (433)
491 PTZ00117 malate dehydrogenase; 92.3 0.28 6.1E-06 42.2 5.3 34 62-95 4-38 (319)
492 cd05293 LDH_1 A subgroup of L- 92.3 0.25 5.5E-06 42.4 5.0 33 63-95 3-37 (312)
493 PLN02520 bifunctional 3-dehydr 92.3 0.23 4.9E-06 45.8 4.9 34 62-95 378-411 (529)
494 PRK14027 quinate/shikimate deh 92.3 0.26 5.7E-06 41.8 5.0 33 63-95 127-160 (283)
495 PRK10669 putative cation:proto 92.3 0.27 5.9E-06 45.3 5.4 33 63-95 417-449 (558)
496 PRK08328 hypothetical protein; 92.2 0.29 6.3E-06 40.1 5.0 34 62-95 26-60 (231)
497 TIGR01809 Shik-DH-AROM shikima 92.2 0.28 6E-06 41.4 5.0 34 62-95 124-158 (282)
498 COG0686 Ald Alanine dehydrogen 92.1 0.15 3.2E-06 44.1 3.2 34 62-95 167-200 (371)
499 TIGR01035 hemA glutamyl-tRNA r 92.1 0.26 5.6E-06 44.0 4.9 34 62-95 179-213 (417)
500 COG0240 GpsA Glycerol-3-phosph 92.0 0.26 5.6E-06 42.8 4.6 32 64-95 2-33 (329)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.78 E-value=4.7e-19 Score=146.85 Aligned_cols=114 Identities=26% Similarity=0.410 Sum_probs=100.3
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhcC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLLG 144 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (189)
+|+|||+|++||+||+.|+..|++|+||||+ ..+|||+.+++.+... ||+|++||...++.|.+.++.|.+++++..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg-~GvGGRlAtRRl~~g~--~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~ 79 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKG-RGVGGRLATRRLDGGR--FDHGAQYFKPRDELFLRAVEALRDDGLVDV 79 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcC-CCcccchheeccCCcc--ccccceeecCCchHHHHHHHHHHhCCceee
Confidence 6999999999999999999999999999999 9999999999987654 999999999999999999999999988872
Q ss_pred c---------------------------hHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557 145 Y---------------------------SKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK 184 (189)
Q Consensus 145 ~---------------------------~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~ 184 (189)
| +.+++.+.. +.+|+++++|+.+.+.++.|+|+++++
T Consensus 80 W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAt---dL~V~~~~rVt~v~~~~~~W~l~~~~g 143 (331)
T COG3380 80 WTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLAT---DLTVVLETRVTEVARTDNDWTLHTDDG 143 (331)
T ss_pred ccccccccccCCCCCCCCCCccccCcchHHHHHHHhc---cchhhhhhhhhhheecCCeeEEEecCC
Confidence 1 223444444 789999999999999999999998544
No 2
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.45 E-value=2.6e-13 Score=130.41 Aligned_cols=100 Identities=25% Similarity=0.287 Sum_probs=83.5
Q ss_pred ccceeecccccCCCCCCCCCCCCCCcCccccCCCCcchhhHhhhhhhhccccc-----cCC--CCCCCCEEEECCCHHHH
Q 041557 4 VTSTIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTF-----TAP--ISSNPHVKIIGGGMAVL 76 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~v~IiG~G~~Gl 76 (189)
+|-+++...-+.|...+..|+|||+.+|+|+...+++.++.+++.+....+.. ..+ +...++|+|||||++||
T Consensus 473 ~A~~~I~~~nPlP~icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGL 552 (1019)
T PRK09853 473 EALELIYQRNALPAITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGL 552 (1019)
T ss_pred HHHHHHHHhCChhhHhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHH
Confidence 35566777778888889999999999999998888999999999887654321 112 24578999999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 77 ACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 77 ~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
++|+.|+++|++|+|||+. +.+||++.
T Consensus 553 sAA~~Lar~G~~VtV~Ek~-~~~GG~lr 579 (1019)
T PRK09853 553 AAAYFLARAGHPVTVFERE-ENAGGVVK 579 (1019)
T ss_pred HHHHHHHHcCCeEEEEecc-cccCccee
Confidence 9999999999999999997 88999874
No 3
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.44 E-value=1.2e-13 Score=132.91 Aligned_cols=100 Identities=22% Similarity=0.229 Sum_probs=83.7
Q ss_pred ccceeecccccCCCCCCCCCCCCCCcCccccCCCCcchhhHhhhhhhhccccc-----c--CCCCCCCCEEEECCCHHHH
Q 041557 4 VTSTIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTF-----T--APISSNPHVKIIGGGMAVL 76 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~v~IiG~G~~Gl 76 (189)
+|-++|...-+.|...+..|.|||+.+|+|+...+++.++.+++.+....+.. . .+....++|+|||||++||
T Consensus 471 ~A~~vi~~~nPlp~icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGL 550 (1012)
T TIGR03315 471 EALEVIYDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGL 550 (1012)
T ss_pred HHHHHHHHhCChhhHhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHH
Confidence 45667777788888899999999999999998889999999999887654321 1 1123468999999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 77 ACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 77 ~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
+||+.|+++|++|+|||+. +.+||++.
T Consensus 551 SAA~~LAr~G~~VTV~Ek~-~~lGG~l~ 577 (1012)
T TIGR03315 551 SAGYFLARAGHPVTVFEKK-EKPGGVVK 577 (1012)
T ss_pred HHHHHHHHCCCeEEEEecc-cccCceee
Confidence 9999999999999999997 88999864
No 4
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.42 E-value=2.5e-13 Score=131.54 Aligned_cols=100 Identities=20% Similarity=0.124 Sum_probs=83.0
Q ss_pred ccceeecccccCCCCCCCCCCC--CCCcCccccCCCCcchhhHhhhhhhhccc----cccCCCCCCCCEEEECCCHHHHH
Q 041557 4 VTSTIIKATSSQPKTNSTNAQK--PTCRNCRRGSSYGSPRRSALKKTFTQKQF----TFTAPISSNPHVKIIGGGMAVLA 77 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--p~~~~c~r~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~IiG~G~~Gl~ 77 (189)
.|-.++..+.+-|...+..|++ ||+.+|+|+....++.+..++++...... .....+...++|+||||||+||+
T Consensus 365 ~A~~~i~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLs 444 (1006)
T PRK12775 365 GALEVIYEASIFPSICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLA 444 (1006)
T ss_pred HHHHHHHHhCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHH
Confidence 4566777888889999999998 99999999988889998888888765432 11111235789999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 78 CALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 78 ~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
+|++|+++|++|+|||+. +.+||.+.
T Consensus 445 aA~~La~~G~~VtV~E~~-~~~GG~l~ 470 (1006)
T PRK12775 445 AAADLVKYGVDVTVYEAL-HVVGGVLQ 470 (1006)
T ss_pred HHHHHHHcCCcEEEEecC-CCCcceee
Confidence 999999999999999997 88998864
No 5
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.42 E-value=3.1e-13 Score=130.14 Aligned_cols=98 Identities=18% Similarity=0.274 Sum_probs=78.8
Q ss_pred ccceeecccccCCCCCCCCCCC--CCCcCccccCCCCcchhhHhhhhhhhccc--------ccc---C--CCCCCCCEEE
Q 041557 4 VTSTIIKATSSQPKTNSTNAQK--PTCRNCRRGSSYGSPRRSALKKTFTQKQF--------TFT---A--PISSNPHVKI 68 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--p~~~~c~r~~~~~~~~~~~~~~~~~~~~~--------~~~---~--~~~~~~~v~I 68 (189)
+|-++|..+.+-|...+..|++ ||+.+|+++. .++.+..++++...... .+. . .+...++|+|
T Consensus 234 ~A~~~i~~~np~p~~~GrVCp~~~~CE~~C~~~~--~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaV 311 (944)
T PRK12779 234 EALELIESCNPLPNVTGRVCPQELQCQGVCTHTK--RPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAV 311 (944)
T ss_pred HHHHHHHHhCChhHHhcCcCCCccCHHHhccCCC--cCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEE
Confidence 4667788888999999999999 6999999984 47777777776554311 111 1 1345789999
Q ss_pred ECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 69 IGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 69 iG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
||||||||+||+.|+++|++|+|||+. +.+||.+.
T Consensus 312 IGsGPAGLsaA~~Lar~G~~VtVfE~~-~~~GG~l~ 346 (944)
T PRK12779 312 VGSGPSGLINAYLLAVEGFPVTVFEAF-HDLGGVLR 346 (944)
T ss_pred ECCCHHHHHHHHHHHHCCCeEEEEeeC-CCCCceEE
Confidence 999999999999999999999999997 89999874
No 6
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.40 E-value=1.1e-12 Score=88.05 Aligned_cols=65 Identities=31% Similarity=0.416 Sum_probs=53.4
Q ss_pred EECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeC--CchhHHHHHH
Q 041557 68 IIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVN--DSRFGELVDV 135 (189)
Q Consensus 68 IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~l~~ 135 (189)
|||||++||++|+.|+++|++|+|||+. +.+||++.+...+. ..+|.+++++... .+.+.+++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~-~~~GG~~~~~~~~g--~~~d~g~~~~~~~~~~~~~~~l~~~ 67 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKN-DRLGGRARSFRIPG--YRFDLGAHYFFPPDDYPNLFRLLRE 67 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESS-SSSSGGGCEEEETT--EEEETSS-SEEETTSCHHHHHHHHT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecC-cccCcceeEEEECC--EEEeeccEEEeCCCCchHHHHHHcC
Confidence 8999999999999999999999999998 99999999887755 4699999998863 4555555543
No 7
>PRK12831 putative oxidoreductase; Provisional
Probab=99.40 E-value=3.3e-13 Score=121.06 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=81.9
Q ss_pred ccceeecccccCCCCCCCCCCC--CCCcCccccCCCCcchhhHhhhhhhhccc----cccC-CCCCCCCEEEECCCHHHH
Q 041557 4 VTSTIIKATSSQPKTNSTNAQK--PTCRNCRRGSSYGSPRRSALKKTFTQKQF----TFTA-PISSNPHVKIIGGGMAVL 76 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--p~~~~c~r~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~v~IiG~G~~Gl 76 (189)
+|-+++....+.|..-+..|++ ||+.+|+|+....++.+..++++...... .... .+...++|+|||||++||
T Consensus 74 ~a~~~~~~~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl 153 (464)
T PRK12831 74 EAAKIIAKYNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGL 153 (464)
T ss_pred HHHHHHHHhCCchhhhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHH
Confidence 3556666777888888999997 99999999988889988888888776433 2211 234678999999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 77 ACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 77 ~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
++|+.|+++|++|+|||+. +.+||.+.
T Consensus 154 ~aA~~l~~~G~~V~v~e~~-~~~GG~l~ 180 (464)
T PRK12831 154 TCAGDLAKMGYDVTIFEAL-HEPGGVLV 180 (464)
T ss_pred HHHHHHHhCCCeEEEEecC-CCCCCeee
Confidence 9999999999999999997 88888763
No 8
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.39 E-value=3.9e-13 Score=120.70 Aligned_cols=99 Identities=20% Similarity=0.324 Sum_probs=82.4
Q ss_pred ccceeecccccCCCCCCCCCCCCCCcCccccCCCCcchhhHhhhhhhhccccc-----c-CCCCCCCCEEEECCCHHHHH
Q 041557 4 VTSTIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFTF-----T-APISSNPHVKIIGGGMAVLA 77 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~v~IiG~G~~Gl~ 77 (189)
+|-+++....+.|..-+..|++||+..|+|+...+++.+..++++........ . +++...++|+|||+|++||+
T Consensus 78 ~a~~~~~~~~p~~~~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~ 157 (471)
T PRK12810 78 EAAERLHQTNNFPEFTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLA 157 (471)
T ss_pred HHHHHHHHhCChhHHhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHH
Confidence 45667777788888899999999999999999889999999998877544321 1 12335689999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 78 CALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 78 ~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
+|..|+++|++|+|||+. +.+||.+
T Consensus 158 aA~~l~~~G~~V~vie~~-~~~GG~l 182 (471)
T PRK12810 158 AADQLARAGHKVTVFERA-DRIGGLL 182 (471)
T ss_pred HHHHHHhCCCcEEEEecC-CCCCcee
Confidence 999999999999999997 8888864
No 9
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.38 E-value=1e-12 Score=122.38 Aligned_cols=100 Identities=24% Similarity=0.391 Sum_probs=82.5
Q ss_pred ccceeecccccCCCCCCCCCC--CCCCcCccccCCCCcchhhHhhhhhhhcccc----ccC--CCCCCCCEEEECCCHHH
Q 041557 4 VTSTIIKATSSQPKTNSTNAQ--KPTCRNCRRGSSYGSPRRSALKKTFTQKQFT----FTA--PISSNPHVKIIGGGMAV 75 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~v~IiG~G~~G 75 (189)
+|.+++..+.+.|...+..|+ +||+.+|+|+...+++.+..++++....... ... .+...++|+|||+|++|
T Consensus 260 ~A~~~~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAG 339 (654)
T PRK12769 260 AAVELSHQTNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAG 339 (654)
T ss_pred HHHHHHHHhCCchhHhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHH
Confidence 466778888899999999998 5899999999888888888888877654432 111 12357899999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 76 LACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 76 l~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
|++|+.|++.|++|+|||+. +.+||.+.
T Consensus 340 LsaA~~L~~~G~~V~V~E~~-~~~GG~l~ 367 (654)
T PRK12769 340 LACADVLARNGVAVTVYDRH-PEIGGLLT 367 (654)
T ss_pred HHHHHHHHHCCCeEEEEecC-CCCCceee
Confidence 99999999999999999997 89999864
No 10
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.36 E-value=2.2e-12 Score=115.84 Aligned_cols=100 Identities=23% Similarity=0.381 Sum_probs=81.4
Q ss_pred ccceeecccccCCCCCCCCCC--CCCCcCccccCCCCcchhhHhhhhhhhcccc----ccC--CCCCCCCEEEECCCHHH
Q 041557 4 VTSTIIKATSSQPKTNSTNAQ--KPTCRNCRRGSSYGSPRRSALKKTFTQKQFT----FTA--PISSNPHVKIIGGGMAV 75 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~v~IiG~G~~G 75 (189)
+|-+++...-+.|..-+..|+ +||+.+|+|+...+++.+..++++....... ... .+...++|+|||+|++|
T Consensus 74 ~a~~~~~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaG 153 (467)
T TIGR01318 74 EAAELSHQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAG 153 (467)
T ss_pred HHHHHHHHhCCchHhhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHH
Confidence 355667777788888889998 6999999999888899988888877654332 111 12357899999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 76 LACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 76 l~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
|++|..|+++|++|+|||+. +.+||.+.
T Consensus 154 l~aA~~l~~~G~~V~i~e~~-~~~gG~l~ 181 (467)
T TIGR01318 154 LACADILARAGVQVVVFDRH-PEIGGLLT 181 (467)
T ss_pred HHHHHHHHHcCCeEEEEecC-CCCCceee
Confidence 99999999999999999997 88999764
No 11
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.36 E-value=1.8e-12 Score=120.48 Aligned_cols=100 Identities=24% Similarity=0.372 Sum_probs=82.8
Q ss_pred ccceeecccccCCCCCCCCCC--CCCCcCccccCCCCcchhhHhhhhhhhccc----cccC-C-CCCCCCEEEECCCHHH
Q 041557 4 VTSTIIKATSSQPKTNSTNAQ--KPTCRNCRRGSSYGSPRRSALKKTFTQKQF----TFTA-P-ISSNPHVKIIGGGMAV 75 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~----~~~~-~-~~~~~~v~IiG~G~~G 75 (189)
+|-+++..+.+.|...+..++ +||+.+|+|+...+++.+..++++...... .... + +...++|+|||+|++|
T Consensus 243 ~a~~~~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaG 322 (639)
T PRK12809 243 EAAELCHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAG 322 (639)
T ss_pred HHHHHHHHhCCcchhhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHH
Confidence 456677788889999999997 699999999988889998888887765443 2211 1 2357899999999999
Q ss_pred HHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 76 LACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 76 l~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
|++|+.|+++|++|+|||+. +.+||.+.
T Consensus 323 l~aA~~L~~~G~~Vtv~e~~-~~~GG~l~ 350 (639)
T PRK12809 323 LGCADILARAGVQVDVFDRH-PEIGGMLT 350 (639)
T ss_pred HHHHHHHHHcCCcEEEEeCC-CCCCCeee
Confidence 99999999999999999997 88998864
No 12
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.34 E-value=6.4e-12 Score=109.41 Aligned_cols=123 Identities=20% Similarity=0.183 Sum_probs=78.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeec---ceeeEee---CCchhHHHHHH
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDH---ATQFFTV---NDSRFGELVDV 135 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~---g~~~~~~---~~~~~~~~l~~ 135 (189)
..++|+|||||++||+||..++++|++|+|||+. +.+|-.+...-- ..+++-+ ...|++. ....+...+.+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~-~k~GrKil~sGg--GrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ 78 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKG-PKLGRKILMSGG--GRCNFTNSEAPDEFLSRNPGNGHFLKSALAR 78 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecC-ccccceeEecCC--CCccccccccHHHHHHhCCCcchHHHHHHHh
Confidence 3578999999999999999999999999999997 887654321100 0000100 1111111 11122333444
Q ss_pred Hhhhhhhc--------------Cc--------hHHHHHHhc--cCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557 136 CWKVVLLL--------------GY--------SKSQNLNIF--QTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW 187 (189)
Q Consensus 136 ~~~~~~~~--------------~~--------~~~~~~l~~--~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~ 187 (189)
|...+++. |+ +++++.+.. ...||+++++++|.++++.+.+|.|++.+++.+
T Consensus 79 ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i 154 (408)
T COG2081 79 FTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETV 154 (408)
T ss_pred CCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEE
Confidence 44444433 11 234555443 236899999999999999999999999988644
No 13
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.30 E-value=3e-12 Score=114.32 Aligned_cols=100 Identities=26% Similarity=0.267 Sum_probs=80.6
Q ss_pred ccceeecccccCCCCCCCCCCC--CCCcCccccC----CCCcchhhHhhhhhhhcccc----cc--CCCCCCCCEEEECC
Q 041557 4 VTSTIIKATSSQPKTNSTNAQK--PTCRNCRRGS----SYGSPRRSALKKTFTQKQFT----FT--APISSNPHVKIIGG 71 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--p~~~~c~r~~----~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~v~IiG~ 71 (189)
+|.+++....+.|..-+..|.+ ||+..|+++. ..+++.+..++++....... .. +.+...++|+|||+
T Consensus 62 ~A~~~~~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~ 141 (449)
T TIGR01316 62 GAVDIIKTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGA 141 (449)
T ss_pred HHHHHHHHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECc
Confidence 4566777778888888999999 9999999876 67888888888877643321 11 12345789999999
Q ss_pred CHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 72 GMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 72 G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
|++||++|+.|+++|++|+|||+. +.+||.+.
T Consensus 142 G~aGl~aA~~l~~~G~~V~vie~~-~~~GG~l~ 173 (449)
T TIGR01316 142 GPAGLACASELAKAGHSVTVFEAL-HKPGGVVT 173 (449)
T ss_pred CHHHHHHHHHHHHCCCcEEEEecC-CCCCcEee
Confidence 999999999999999999999997 88888653
No 14
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.30 E-value=7.1e-12 Score=99.24 Aligned_cols=117 Identities=15% Similarity=0.065 Sum_probs=62.4
Q ss_pred EEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCCCcCceeeeeCCcceeeecce--eeEeeCCc---hhHHHHHHHhhhh
Q 041557 67 KIIGGGMAVLACALRLDKRGVK-SNVFDMGNPDLEGRMGTRMIGRQPLIFDHAT--QFFTVNDS---RFGELVDVCWKVV 140 (189)
Q Consensus 67 ~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~--~~~~~~~~---~~~~~l~~~~~~~ 140 (189)
+|||||++||++|..|.++|.+ |+|||++ +.+||.|......... +.... ..+...+. .+... ..+....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~-~~~Gg~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 76 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERN-DRPGGVWRRYYSYTRL--HSPSFFSSDFGLPDFESFSFDDS-PEWRWPH 76 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESS-SSSTTHHHCH-TTTT---BSSSCCTGGSS--CCCHSCHHHH-HHHHHSB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCC-CCCCCeeEEeCCCCcc--ccCccccccccCCcccccccccC-CCCCCCc
Confidence 6999999999999999999999 9999998 9999998743211100 00000 00000000 01000 0110000
Q ss_pred hhcCchHHHHHHhc--cCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557 141 LLLGYSKSQNLNIF--QTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW 187 (189)
Q Consensus 141 ~~~~~~~~~~~l~~--~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~ 187 (189)
......++.+++.. ...+++++++++|+++++.+++|.|++.++..+
T Consensus 77 ~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~ 125 (203)
T PF13738_consen 77 DFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTI 125 (203)
T ss_dssp SSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EE
T ss_pred ccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEeccee
Confidence 00011222333322 113567999999999999999999999887444
No 15
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.27 E-value=6.2e-12 Score=117.14 Aligned_cols=100 Identities=27% Similarity=0.336 Sum_probs=81.5
Q ss_pred ccceeecccccCCCCCCCCCCCCCCcCccccCCCCcchhhHhhhhhhhccc----ccc--CCCCCCCCEEEECCCHHHHH
Q 041557 4 VTSTIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQF----TFT--APISSNPHVKIIGGGMAVLA 77 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~v~IiG~G~~Gl~ 77 (189)
+|-.++...-+.|..-+..|++||+..|+|+...+++.+..++++...... .+. .++...++|+|||+|++||+
T Consensus 128 ~a~~~~~~~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~ 207 (652)
T PRK12814 128 EAIRIIKETIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLT 207 (652)
T ss_pred HHHHHHHhhCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHH
Confidence 456677778888999999999999999999887788888888887664322 111 12345689999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 78 CALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 78 ~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
+|+.|+++|++|+|||+. +.+||.+.
T Consensus 208 aA~~La~~G~~Vtv~e~~-~~~GG~l~ 233 (652)
T PRK12814 208 AAYYLLRKGHDVTIFDAN-EQAGGMMR 233 (652)
T ss_pred HHHHHHHCCCcEEEEecC-CCCCceee
Confidence 999999999999999997 88888764
No 16
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.26 E-value=5.5e-12 Score=113.78 Aligned_cols=99 Identities=21% Similarity=0.292 Sum_probs=80.0
Q ss_pred ccceeecccccCCCCCCCCCCCCCCcCccccCCCCcchhhHhhhhhhhcccc----ccC--CCCCCCCEEEECCCHHHHH
Q 041557 4 VTSTIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQFT----FTA--PISSNPHVKIIGGGMAVLA 77 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~v~IiG~G~~Gl~ 77 (189)
+|-.++..+.+.|...+..|++||+.+|+|+...+++.+..++++....... ... .+...++|+|||+|++|++
T Consensus 78 ~a~~~~~~~~p~p~~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~ 157 (485)
T TIGR01317 78 EALDRLHATNNFPEFTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLA 157 (485)
T ss_pred HHHHHHHhhCCchhHHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHH
Confidence 3556667777888888999999999999999888888888888887544322 111 1234579999999999999
Q ss_pred HHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 78 CALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 78 ~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
+|..|+++|++|+|||+. +.+||.+
T Consensus 158 aA~~L~~~g~~V~v~e~~-~~~gG~l 182 (485)
T TIGR01317 158 AADQLNRAGHTVTVFERE-DRCGGLL 182 (485)
T ss_pred HHHHHHHcCCeEEEEecC-CCCCcee
Confidence 999999999999999997 8888764
No 17
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.26 E-value=2.4e-11 Score=107.63 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=61.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc--------CceeeeeCCcceeeecceeeEee--CCc-hhHHH
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG--------RMGTRMIGRQPLIFDHATQFFTV--NDS-RFGEL 132 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg--------~~~~~~~~~~~~~~~~g~~~~~~--~~~-~~~~~ 132 (189)
+||+|||||+|||+||+.|++.|.+|+|+|++ +.+|- ++.-.+.... ...|+.. .++ .+...
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~-~~~gkKil~tG~GrCN~tn~~~~------~~~~~~~~~~~~~f~~~~ 73 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERN-KRVGKKILITGNGRCNLTNLNID------PSEFLSGYGRNPKFLKSA 73 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SS-SSS-HHHHHCGGGT-EEEETTSS------GGGEECS-TBTTTCTHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC-cccccceeecCCCCccccccccc------hhhHhhhcccchHHHHHH
Confidence 58999999999999999999999999999998 88753 4332221100 0112211 122 22223
Q ss_pred HHHHhhhhhhc--------------C----c----hHHHHHHhc--cCCCcEEEeCceeEEEEEeCCe-EEEEeCCeeee
Q 041557 133 VDVCWKVVLLL--------------G----Y----SKSQNLNIF--QTSKVNVVRTCWISNLEPFNGM-WYLGENGKTAW 187 (189)
Q Consensus 133 l~~~~~~~~~~--------------~----~----~~~~~~l~~--~~~~v~v~~~t~V~~i~~~~~~-w~l~~~~~~~~ 187 (189)
+..|...+++. + . .++.+.|.. ...+++|+++++|.+|+.++++ |.|.+++...|
T Consensus 74 l~~f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~ 153 (409)
T PF03486_consen 74 LKRFSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEY 153 (409)
T ss_dssp HHHS-HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEE
T ss_pred HhcCCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccc
Confidence 33332222221 1 1 233444433 2358999999999999998777 99998444433
No 18
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.23 E-value=1.5e-11 Score=112.66 Aligned_cols=100 Identities=25% Similarity=0.420 Sum_probs=80.2
Q ss_pred ccceeecccccCCCCCCCCCCCCCCcCccccCCCCcchhhHhhhhhhhcc----ccccCC-CCCCCCEEEECCCHHHHHH
Q 041557 4 VTSTIIKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQ----FTFTAP-ISSNPHVKIIGGGMAVLAC 78 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~v~IiG~G~~Gl~~ 78 (189)
+|-+++...-+.|...+..|.+||+.+|+|+..+.++....+++...... +....+ ....++|+|||+|++||++
T Consensus 73 ~a~~~~~~~np~~~~~grvc~~~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~a 152 (564)
T PRK12771 73 YAWRRLTKDNPFPAVMGRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSA 152 (564)
T ss_pred HHHHHHHHhCCcchHhhCcCCchhHHhccCCCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHH
Confidence 35556666778888889999999999999998888888888888654322 222221 3467899999999999999
Q ss_pred HHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 79 ALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 79 A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
|+.|+++|++|+|||+. +.+||.+.
T Consensus 153 A~~l~~~G~~V~v~e~~-~~~GG~l~ 177 (564)
T PRK12771 153 AYHLRRMGHAVTIFEAG-PKLGGMMR 177 (564)
T ss_pred HHHHHHCCCeEEEEecC-CCCCCeee
Confidence 99999999999999997 88888653
No 19
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.22 E-value=1.3e-11 Score=110.22 Aligned_cols=99 Identities=20% Similarity=0.271 Sum_probs=78.9
Q ss_pred ccceeecccccCCCCCCCCCCCC--CCcCccccCCCCcchhhHhhhhhhhccccc-----cCCCCCCCCEEEECCCHHHH
Q 041557 4 VTSTIIKATSSQPKTNSTNAQKP--TCRNCRRGSSYGSPRRSALKKTFTQKQFTF-----TAPISSNPHVKIIGGGMAVL 76 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p--~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~IiG~G~~Gl 76 (189)
+|-+++....+-|...+..|.+| |+..|+++....++.+..+++......+.. ..++...++|+|||||++||
T Consensus 74 ~a~~~~~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl 153 (457)
T PRK11749 74 GAAETILETNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGL 153 (457)
T ss_pred HHHHHHHHhCCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHH
Confidence 35566777788888899999999 999999987777777777777655433221 12234568999999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 77 ACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 77 ~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
++|..|+++|++|+|||+. +.+||.+
T Consensus 154 ~aA~~l~~~g~~V~lie~~-~~~gG~l 179 (457)
T PRK11749 154 TAAHRLARKGYDVTIFEAR-DKAGGLL 179 (457)
T ss_pred HHHHHHHhCCCeEEEEccC-CCCCcEe
Confidence 9999999999999999997 8888764
No 20
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.21 E-value=4.4e-11 Score=107.14 Aligned_cols=100 Identities=22% Similarity=0.189 Sum_probs=80.2
Q ss_pred cceeecccccCCCCCCCCCCCC--CCcCccccCCCCcchhhHhhhhhhhccccc----c-CC-CCCCCCEEEECCCHHHH
Q 041557 5 TSTIIKATSSQPKTNSTNAQKP--TCRNCRRGSSYGSPRRSALKKTFTQKQFTF----T-AP-ISSNPHVKIIGGGMAVL 76 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~p--~~~~c~r~~~~~~~~~~~~~~~~~~~~~~~----~-~~-~~~~~~v~IiG~G~~Gl 76 (189)
|..+|..+-..|...+..|..| |+.+|.+.....++.+..++.+....++.. . .+ ....++|+|||+||+||
T Consensus 57 a~~~i~~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl 136 (457)
T COG0493 57 AIKLIHKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGL 136 (457)
T ss_pred HHHHHHHhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHh
Confidence 4566777778888889999999 999999987677777777766655544331 1 12 33568999999999999
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCCcCcee
Q 041557 77 ACALRLDKRGVKSNVFDMGNPDLEGRMGT 105 (189)
Q Consensus 77 ~~A~~l~~~g~~v~v~e~~~~~~gg~~~~ 105 (189)
++|..|++.|+.|+|||+. +.+||++..
T Consensus 137 ~~a~~L~~~G~~Vtv~e~~-~~~GGll~y 164 (457)
T COG0493 137 AAADDLSRAGHDVTVFERV-ALDGGLLLY 164 (457)
T ss_pred hhHHHHHhCCCeEEEeCCc-CCCceeEEe
Confidence 9999999999999999997 999999743
No 21
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.20 E-value=2.1e-11 Score=115.16 Aligned_cols=100 Identities=23% Similarity=0.304 Sum_probs=80.7
Q ss_pred ccceeecccccCCCCCCCCCCC--CCCcCccccCCC-CcchhhHhhhhhhhcccc---ccCC---CCCCCCEEEECCCHH
Q 041557 4 VTSTIIKATSSQPKTNSTNAQK--PTCRNCRRGSSY-GSPRRSALKKTFTQKQFT---FTAP---ISSNPHVKIIGGGMA 74 (189)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--p~~~~c~r~~~~-~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~v~IiG~G~~ 74 (189)
+|-+++..+.+.|...+..|++ ||+..|++.... .++.+..+++...+.... ...| +...++|+|||||++
T Consensus 363 ~a~~~~~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpA 442 (752)
T PRK12778 363 EAAKILKETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPA 442 (752)
T ss_pred HHHHHHHhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHH
Confidence 4556777788888999999986 999999999877 788888888876643221 1111 345789999999999
Q ss_pred HHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 75 VLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 75 Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
||++|+.|+++|++|+|||+. +.+||.+.
T Consensus 443 Gl~aA~~l~~~G~~V~v~e~~-~~~GG~l~ 471 (752)
T PRK12778 443 GLSFAGDLAKRGYDVTVFEAL-HEIGGVLK 471 (752)
T ss_pred HHHHHHHHHHCCCeEEEEecC-CCCCCeee
Confidence 999999999999999999997 88898864
No 22
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.19 E-value=5.2e-11 Score=106.92 Aligned_cols=44 Identities=30% Similarity=0.392 Sum_probs=40.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCcee
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT 105 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~ 105 (189)
...++|+|||||++||++|..|.+.|++|+|||++ ..+||.|..
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~-~~vGG~W~~ 51 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFERE-KQVGGLWVY 51 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecC-CCCcceeec
Confidence 34688999999999999999999999999999998 999999854
No 23
>PRK07208 hypothetical protein; Provisional
Probab=99.18 E-value=6.3e-11 Score=105.98 Aligned_cols=72 Identities=28% Similarity=0.294 Sum_probs=56.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHH
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDV 135 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~ 135 (189)
+..++|+|||||++||++|+.|+++|++|+|+|+. +.+||++.+...++ +.+|.|.+++...++.+.+++++
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~-~~~GG~~~s~~~~g--~~~d~G~h~~~~~~~~~~~l~~~ 73 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEAD-PVVGGISRTVTYKG--NRFDIGGHRFFSKSPEVMDLWNE 73 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCceeeeeccCC--ceEccCCceeccCCHHHHHHHHH
Confidence 35678999999999999999999999999999997 99999988766544 34777877666555544444333
No 24
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.17 E-value=4.1e-11 Score=105.70 Aligned_cols=63 Identities=25% Similarity=0.423 Sum_probs=51.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchh
Q 041557 64 PHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRF 129 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 129 (189)
++|+|||||++||+||+.|++.| ++|+|||+. +.+||++.+....+ ..+|.|++++....+.+
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~-~~~GGr~~t~~~~g--~~~d~G~~~~~~~~~~~ 65 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEAS-DRLGGKIQTVRKDG--FPIELGPESFLARKPSA 65 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcC-CCCcceEEEEeeCC--eEEecChHHhcCCcHHH
Confidence 36999999999999999999988 899999998 99999999877654 35788887555444333
No 25
>PLN02268 probable polyamine oxidase
Probab=99.15 E-value=1e-10 Score=103.48 Aligned_cols=58 Identities=26% Similarity=0.385 Sum_probs=51.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEee
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTV 124 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~ 124 (189)
++|+|||||++||++|+.|.+.|++|+|+|+. +.+||++.+....+ ..+|.|+++++.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~-~r~GGri~t~~~~g--~~~d~G~~~i~~ 58 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESR-DRIGGRVHTDYSFG--FPVDMGASWLHG 58 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCceeeecCcCC--cccCCCCeeEec
Confidence 47999999999999999999999999999997 99999998865544 358999998874
No 26
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.15 E-value=7.5e-11 Score=104.75 Aligned_cols=67 Identities=25% Similarity=0.397 Sum_probs=56.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHH
Q 041557 64 PHVKIIGGGMAVLACALRLDKR----GVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELV 133 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~----g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l 133 (189)
++|+|||||++||++|+.|+++ |++|+|||+. +.+||++.+...++ ..+|.|++++...++.+.+++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~-~r~GG~~~t~~~~g--~~~e~G~~~~~~~~~~~~~l~ 73 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEAS-DRVGGKIQTVKEDG--YLIERGPDSFLERKKSAPDLV 73 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcC-CcCcceEEEEeeCC--EEEecCccccccCChHHHHHH
Confidence 5899999999999999999999 9999999997 99999999877654 357888887776655444443
No 27
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=99.11 E-value=6.2e-11 Score=108.14 Aligned_cols=41 Identities=29% Similarity=0.429 Sum_probs=35.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCcee
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT 105 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~ 105 (189)
++|+|||||++||++|..|.+.|++|++||+. +.+||.|..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~-~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKS-DDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESS-SSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecC-CCCCccCee
Confidence 68999999999999999999999999999998 999999963
No 28
>PRK07233 hypothetical protein; Provisional
Probab=99.11 E-value=1.2e-10 Score=102.00 Aligned_cols=55 Identities=33% Similarity=0.508 Sum_probs=45.6
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeE
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFF 122 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~ 122 (189)
+|+|||||++||++|+.|+++|++|+|+|+. +.+||++.+....+. .+|.|.+++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~-~~~GG~~~s~~~~g~--~~d~g~~~~ 55 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEAD-DQLGGLAASFEFGGL--PIERFYHHI 55 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeC-CCCCCceeeeccCCc--chhhhhhhh
Confidence 5899999999999999999999999999998 999999877665432 345554444
No 29
>PLN02576 protoporphyrinogen oxidase
Probab=99.11 E-value=1.5e-10 Score=103.95 Aligned_cols=63 Identities=24% Similarity=0.396 Sum_probs=52.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDS 127 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (189)
...+|+|||||++||++|+.|+++ |++|+|||+. +.+||++.+.+.++ +.+|.|++++...++
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~-~rvGGr~~t~~~~g--~~~d~G~~~~~~~~~ 74 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEAR-DRVGGNITSVSEDG--FIWEEGPNSFQPSDP 74 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecC-CCCCCceeEeccCC--eEEecCCchhccCcH
Confidence 346899999999999999999999 9999999998 99999999877654 357777776654333
No 30
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.10 E-value=1.3e-10 Score=103.80 Aligned_cols=117 Identities=17% Similarity=0.134 Sum_probs=71.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCC------c-ceeeecceeeEeeCCchhHHHHH
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGR------Q-PLIFDHATQFFTVNDSRFGELVD 134 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~------~-~~~~~~g~~~~~~~~~~~~~~l~ 134 (189)
..++|+|||||+|||++|..|.+.|++|++|||. +.+||.|.-..-.. + .+..+..-++...++-+|.....
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~-~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~ 83 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERT-DDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDP 83 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEec-CCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCc
Confidence 4678999999999999999999999999999998 99999986431100 0 01111111112222222221100
Q ss_pred HHhhhhhhcCchHHHHHHhc----cCCCcEEEeCceeEEEEEeC-CeEEEEeCCe
Q 041557 135 VCWKVVLLLGYSKSQNLNIF----QTSKVNVVRTCWISNLEPFN-GMWYLGENGK 184 (189)
Q Consensus 135 ~~~~~~~~~~~~~~~~~l~~----~~~~v~v~~~t~V~~i~~~~-~~w~l~~~~~ 184 (189)
++ .+.+..+.++|.. ......++|+++|..++..+ +.|.|.+.+.
T Consensus 84 ~~-----~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~ 133 (448)
T KOG1399|consen 84 RY-----FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDN 133 (448)
T ss_pred cc-----CCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecC
Confidence 00 0000112222221 12245899999999999888 7999977554
No 31
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.09 E-value=1.4e-10 Score=103.48 Aligned_cols=67 Identities=19% Similarity=0.302 Sum_probs=54.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHH
Q 041557 64 PHVKIIGGGMAVLACALRLDKR------GVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELV 133 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~------g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l 133 (189)
++|+|||||++||++|+.|++. |++|+|+|+. +.+||++.+.+..+ ..+|.|++++....+.+.+++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~-~r~GGr~~T~~~~g--~~~e~G~~~i~~~~~~~~~l~ 74 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKE-EYLGGKIHSVEEKD--FIMESGADSIVARNEHVMPLV 74 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecC-CCccceEEEEeeCC--EEEecCcHHHhcCCHHHHHHH
Confidence 4699999999999999999986 3799999998 99999999987654 357888887765555444443
No 32
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.09 E-value=5.4e-10 Score=99.95 Aligned_cols=118 Identities=15% Similarity=0.140 Sum_probs=71.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhH--HHHHHH
Q 041557 60 ISSNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFG--ELVDVC 136 (189)
Q Consensus 60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~l~~~ 136 (189)
.....+|+|||||++||++|+.|.+.|.. ++||||. ..+||.|...+.+.. ..+....++..+...|. .....+
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~-~~~Gg~W~~~ry~~l--~~~~p~~~~~~~~~p~~~~~~~~~~ 81 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKR-DDVGGTWRYNRYPGL--RLDSPKWLLGFPFLPFRWDEAFAPF 81 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEcc-CCcCCcchhccCCce--EECCchheeccCCCccCCcccCCCc
Confidence 34578999999999999999999999999 9999997 999999876554321 22222222222222221 000000
Q ss_pred h-hhhhhcCchHHHHHHhccCCCcEEEeCceeEEEEEeC--CeEEEEeCCeee
Q 041557 137 W-KVVLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFN--GMWYLGENGKTA 186 (189)
Q Consensus 137 ~-~~~~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~--~~w~l~~~~~~~ 186 (189)
. ...++ .+..+.+.. ...+++++.|+.+.++. +.|+|++.++..
T Consensus 82 ~~~~~y~---~~~~~~y~~---~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~ 128 (443)
T COG2072 82 AEIKDYI---KDYLEKYGL---RFQIRFNTRVEVADWDEDTKRWTVTTSDGGT 128 (443)
T ss_pred ccHHHHH---HHHHHHcCc---eeEEEcccceEEEEecCCCCeEEEEEcCCCe
Confidence 0 00000 001222222 35777888888777654 479998887664
No 33
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.09 E-value=3.3e-10 Score=102.60 Aligned_cols=65 Identities=23% Similarity=0.229 Sum_probs=55.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCC
Q 041557 60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVND 126 (189)
Q Consensus 60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~ 126 (189)
....++|+|||||++||+||..|.+.|++|+|+|+. +.+|||+.+.+..... ..|.|+++++...
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEAR-dRvGGRI~t~~~~~~~-~vd~Gas~~~g~~ 76 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEAR-DRVGGRIYTFKSEGGD-HVDLGASVLTGVY 76 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEecc-CCcCceeEEEecCCCC-eeecCCceecCcC
Confidence 345678999999999999999999999999999996 9999999998776543 4788888887543
No 34
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.08 E-value=1.6e-10 Score=110.71 Aligned_cols=89 Identities=11% Similarity=0.112 Sum_probs=68.2
Q ss_pred cceeecccccCCCCCC-CCCCCCCCcCccccCCCCcchhhHhhhhhhhc---------------cccc-----c-CCCCC
Q 041557 5 TSTIIKATSSQPKTNS-TNAQKPTCRNCRRGSSYGSPRRSALKKTFTQK---------------QFTF-----T-APISS 62 (189)
Q Consensus 5 ~~~~~~~~~~~~~~~~-~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~---------------~~~~-----~-~~~~~ 62 (189)
|-+++...-+-|...+ ..|+ ||+.+|+|+ ...++.+..++++.... .+.. . +.+..
T Consensus 305 Al~ii~~~NP~p~~~G~RVCp-~CE~aC~r~-~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~t 382 (1028)
T PRK06567 305 ALAIIVIDNPMVAATGHRICN-DCSKACIYQ-KQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPT 382 (1028)
T ss_pred HHHHHHHhCCChHhhCCccCc-chHHHhcCC-CCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCC
Confidence 4455666667777777 7897 799999998 67788888888765432 1110 1 11346
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++|+|||+||+||++|+.|+++|++|+|||+.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 789999999999999999999999999999984
No 35
>PRK13984 putative oxidoreductase; Provisional
Probab=99.07 E-value=1.6e-10 Score=106.61 Aligned_cols=94 Identities=20% Similarity=0.181 Sum_probs=72.9
Q ss_pred ecccccCCCCCCCCCCCCCCcCccccCCCCcchhhHhhhhhhhccc----c---ccCCCCCCCCEEEECCCHHHHHHHHH
Q 041557 9 IKATSSQPKTNSTNAQKPTCRNCRRGSSYGSPRRSALKKTFTQKQF----T---FTAPISSNPHVKIIGGGMAVLACALR 81 (189)
Q Consensus 9 ~~~~~~~~~~~~~~~~~p~~~~c~r~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~v~IiG~G~~Gl~~A~~ 81 (189)
+....+-+..-+..|++||+.+|+|+..+.++.+..++++...... . ........++|+|||+|++|+++|..
T Consensus 222 ~~~~np~~~~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~ 301 (604)
T PRK13984 222 LYKTNPLSMVCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYF 301 (604)
T ss_pred HHhcCCccchhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHH
Confidence 3335556777788899999999999877777777777766554321 1 11223467889999999999999999
Q ss_pred HHHcCCeEEEEecCCCCCCcCc
Q 041557 82 LDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 82 l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
|+++|++|+|||+. +.+||.+
T Consensus 302 L~~~G~~v~vie~~-~~~gG~~ 322 (604)
T PRK13984 302 LATMGYEVTVYESL-SKPGGVM 322 (604)
T ss_pred HHHCCCeEEEEecC-CCCCceE
Confidence 99999999999997 8888764
No 36
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.05 E-value=3.9e-10 Score=101.84 Aligned_cols=59 Identities=27% Similarity=0.425 Sum_probs=50.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEe
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFT 123 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~ 123 (189)
+.+||+|||||+.||++|..|+++|++|+||||. +.+||++.+....+ +.||.|+.++.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~-~~~GG~a~t~e~~G--f~fd~G~~~~~ 60 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKN-DRVGGRARTFELDG--FRFDTGPSWYL 60 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEec-CCCCcceEEEeccc--eEeccCcceee
Confidence 3578999999999999999999999999999997 99999999877763 45777765554
No 37
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.04 E-value=2.3e-09 Score=89.22 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=62.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee-CCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI-GRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
+||+|||||++||++|..|+++|++|+|||+. + +||++..... ..++ .+.. ......+...+.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~-~gg~~~~~~~~~~~~-~~~~-----~~~~~~~~~~l~-------- 64 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGM-E-PGGQLTTTTEVENYP-GFPE-----GISGPELMEKMK-------- 64 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecc-C-CCcceeecccccccC-CCCC-----CCChHHHHHHHH--------
Confidence 47999999999999999999999999999986 4 7887643211 1000 0000 011111211111
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA 186 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~ 186 (189)
+.+.. .++++++ ++|++++..++.|.|.+.++..
T Consensus 65 -------~~~~~--~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~ 98 (300)
T TIGR01292 65 -------EQAVK--FGAEIIY-EEVIKVDLSDRPFKVKTGDGKE 98 (300)
T ss_pred -------HHHHH--cCCeEEE-EEEEEEEecCCeeEEEeCCCCE
Confidence 11111 2789988 8999999888889888766443
No 38
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=99.02 E-value=1.4e-09 Score=104.02 Aligned_cols=89 Identities=22% Similarity=0.278 Sum_probs=67.9
Q ss_pred CCCCCCCCCCCCCCcCccccCCCCcch----hhHhhhhhhhccccccCCC--CCCCCEEEECCCHHHHHHHHHHHHcCCe
Q 041557 15 QPKTNSTNAQKPTCRNCRRGSSYGSPR----RSALKKTFTQKQFTFTAPI--SSNPHVKIIGGGMAVLACALRLDKRGVK 88 (189)
Q Consensus 15 ~~~~~~~~~~~p~~~~c~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~v~IiG~G~~Gl~~A~~l~~~g~~ 88 (189)
-|+=++..|+.||+.+|..+-...++. +.++-+.+...+|-.+.|+ ...++|+|||+||+||+||-+|-+.|+.
T Consensus 1731 fpeftgrvcpapcegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~ 1810 (2142)
T KOG0399|consen 1731 FPEFTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHT 1810 (2142)
T ss_pred CccccCccCCCCcCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcE
Confidence 355568889999999998854433332 3344444555555443333 3689999999999999999999999999
Q ss_pred EEEEecCCCCCCcCce
Q 041557 89 SNVFDMGNPDLEGRMG 104 (189)
Q Consensus 89 v~v~e~~~~~~gg~~~ 104 (189)
|+|||+. +.+||.+.
T Consensus 1811 v~vyer~-dr~ggll~ 1825 (2142)
T KOG0399|consen 1811 VTVYERS-DRVGGLLM 1825 (2142)
T ss_pred EEEEEec-CCcCceee
Confidence 9999998 99999874
No 39
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.01 E-value=9.8e-10 Score=98.86 Aligned_cols=58 Identities=28% Similarity=0.347 Sum_probs=50.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEee
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTV 124 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~ 124 (189)
+||+|||||++||++|..|+++|++|+|||++ +.+||++.+....+ +.||.|++++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~-~~~GG~~~t~~~~G--~~fD~G~~~~~~ 59 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQH-AQPGGCAGTFRRRG--FTFDVGATQVAG 59 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecC-CCCCCccceeccCC--EEEeecceEEEe
Confidence 68999999999999999999999999999997 99999998876644 467888777653
No 40
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.99 E-value=1.3e-09 Score=97.01 Aligned_cols=63 Identities=22% Similarity=0.288 Sum_probs=49.9
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeee-eCCcceeeecceeeEeeCCchhH
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRM-IGRQPLIFDHATQFFTVNDSRFG 130 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~ 130 (189)
+|+|||||++||++|+.|.++|++|+|||+. +.+||++.+.. .++ ..+|.|.+++....+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~-~~~GG~~~s~~~~~g--~~~d~G~~~~~~~~~~~~ 64 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEAR-DVLGGKVAAWKDEDG--DWYETGLHIFFGAYPNML 64 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCCCcceeECCCC--CEEEcCcceeccCCchHH
Confidence 5899999999999999999999999999997 99999987753 233 246777776654444433
No 41
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=7.6e-10 Score=99.09 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=59.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHh
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCW 137 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 137 (189)
.+|+|+|||+|||+||++|+++|++|+|||++ +.+||...+.+...+. ..++|.++|-.....+..++++..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~-~~~GGk~~s~~~~dg~-~~E~glh~f~~~Y~n~~~ll~~~~ 72 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEAR-DRLGGKVASWRDSDGN-HVEHGLHVFFGCYYNLLTLLKELP 72 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEecc-CccCceeeeeecCCCC-eeeeeeEEechhHHHHHHHhhhCC
Confidence 47999999999999999999999999999998 9999999887764433 477888888766666665555543
No 42
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.98 E-value=1.1e-09 Score=98.79 Aligned_cols=55 Identities=29% Similarity=0.416 Sum_probs=48.3
Q ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEe
Q 041557 66 VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFT 123 (189)
Q Consensus 66 v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~ 123 (189)
|+|||||++||+||..|++.|++|+|+|++ +.+||++.+....+ +.||.|++++.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~-~~~GG~~~t~~~~G--~~fD~G~~~~~ 55 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQR-DKPGGRAGVLEDDG--FRFDTGPTVIT 55 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECC-CCCcCceEEEecCC--eEEecCCeEEc
Confidence 689999999999999999999999999998 99999998876654 35777777665
No 43
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.98 E-value=1.2e-08 Score=70.01 Aligned_cols=80 Identities=18% Similarity=0.171 Sum_probs=59.1
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhcC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLLG 144 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (189)
+|+|||||+.|+-+|..|++.|.+|+|+++. +.+... + ++.+...+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~-~~~~~~------------~----------~~~~~~~~~~--------- 48 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERS-DRLLPG------------F----------DPDAAKILEE--------- 48 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESS-SSSSTT------------S----------SHHHHHHHHH---------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEecc-chhhhh------------c----------CHHHHHHHHH---------
Confidence 5899999999999999999999999999997 443311 1 1223332222
Q ss_pred chHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557 145 YSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK 184 (189)
Q Consensus 145 ~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~ 184 (189)
.+.. .|+++++++.|+.++.++++++|.+.+|
T Consensus 49 ------~l~~--~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 49 ------YLRK--RGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp ------HHHH--TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred ------HHHH--CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 2222 3899999999999999887777877664
No 44
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.97 E-value=1.3e-09 Score=97.31 Aligned_cols=69 Identities=29% Similarity=0.512 Sum_probs=58.0
Q ss_pred CEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHH
Q 041557 65 HVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVC 136 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 136 (189)
+|+|||||++||++|++|++++ ++|+|||++ +.+||.+.+...+++ .+|.|.+.|....+.+.+++.++
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~-~r~GG~l~T~~~~G~--~~e~G~~~f~~~~~~~l~li~eL 72 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEAD-DRVGGLLRTVKIDGF--LFERGPHHFLARKEEILDLIKEL 72 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecC-CCCCceEEEEeeCCE--EEeechhheecchHHHHHHHHHh
Confidence 6999999999999999999999 999999998 999999999877664 58888887776655555555443
No 45
>PRK06753 hypothetical protein; Provisional
Probab=98.94 E-value=5.4e-09 Score=90.33 Aligned_cols=34 Identities=29% Similarity=0.549 Sum_probs=31.6
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
+|+|||||++||++|+.|+++|++|+|||+. +.+
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~-~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKN-ESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecC-Ccc
Confidence 6999999999999999999999999999996 554
No 46
>PLN02568 polyamine oxidase
Probab=98.93 E-value=3.5e-09 Score=96.87 Aligned_cols=60 Identities=27% Similarity=0.441 Sum_probs=52.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcC-----CeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEee
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRG-----VKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTV 124 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-----~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~ 124 (189)
..++|+|||||++||++|+.|++.| ++|+|||+. ..+||++.+....++ .+|.|+++++.
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~-~~~GGr~~t~~~~g~--~~d~G~~~~~g 68 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGG-DRIGGRINTSEFGGE--RIEMGATWIHG 68 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCC-CCcCCeEEEEEeCCe--EEecCCceeCC
Confidence 3578999999999999999999887 899999997 999999998776553 58889888874
No 47
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.93 E-value=8.3e-09 Score=93.76 Aligned_cols=100 Identities=16% Similarity=0.238 Sum_probs=65.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhh
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVL 141 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~ 141 (189)
..+||+|||||++||++|.+|+++|++|+|++. .+||++..... +..-..+.......+.+.+.
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~---~~GG~~~~~~~------~~~~~~~~~~~~~~l~~~l~------- 273 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE---RFGGQVLDTMG------IENFISVPETEGPKLAAALE------- 273 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec---CCCCeeeccCc------ccccCCCCCCCHHHHHHHHH-------
Confidence 468999999999999999999999999999975 48888753210 00000000011111221111
Q ss_pred hcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557 142 LLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW 187 (189)
Q Consensus 142 ~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~ 187 (189)
+.+.. .+++++++++|+++.+.++.|.|.+.++..+
T Consensus 274 --------~~~~~--~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i 309 (517)
T PRK15317 274 --------EHVKE--YDVDIMNLQRASKLEPAAGLIEVELANGAVL 309 (517)
T ss_pred --------HHHHH--CCCEEEcCCEEEEEEecCCeEEEEECCCCEE
Confidence 12221 2689999999999998878899987666544
No 48
>PRK07588 hypothetical protein; Provisional
Probab=98.92 E-value=1.2e-08 Score=89.04 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=31.0
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD 98 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~ 98 (189)
+|+|||||++||++|+.|+++|++|+|||+. +.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~-~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERA-PE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCC-CC
Confidence 7999999999999999999999999999986 44
No 49
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.91 E-value=6.6e-09 Score=84.56 Aligned_cols=41 Identities=29% Similarity=0.448 Sum_probs=37.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
..||+|+|+||+||+||++|+++|.+|+|||+. -.+||-++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~-ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERK-LSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEee-cccCCccc
Confidence 568999999999999999999999999999997 78877653
No 50
>PLN02612 phytoene desaturase
Probab=98.91 E-value=8.6e-09 Score=94.80 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=51.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee-CCcceeeecceeeEeeCCch
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI-GRQPLIFDHATQFFTVNDSR 128 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~-~~~~~~~~~g~~~~~~~~~~ 128 (189)
...++|+|||+|++||++|+.|+++|++|+|+|+. +.+||++.+... ++ ..+|.|.+++....+.
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~-~~~gG~~~s~~~~~G--~~~D~G~h~~~g~~~~ 156 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEAR-DVLGGKVAAWKDEDG--DWYETGLHIFFGAYPN 156 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecC-CCCCCcceeeEcCCC--CEEcCCceEEeCCCch
Confidence 34678999999999999999999999999999997 899999887543 32 2467777766544333
No 51
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.91 E-value=5e-08 Score=82.38 Aligned_cols=31 Identities=39% Similarity=0.640 Sum_probs=30.1
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
||+|||||++|+++|+.|+++|++|+|||++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 6999999999999999999999999999996
No 52
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.90 E-value=9.6e-09 Score=85.63 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=37.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
...||+|||||++||++|+.|+++|++|+|+|+. ..+||.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~-~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERS-LAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccc
Confidence 4679999999999999999999999999999997 8887654
No 53
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.90 E-value=3.9e-08 Score=81.37 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=33.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
+||+|||||++||++|+.|++.|++|+|+|+. ..++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~-~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKK-SFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-CCCCc
Confidence 48999999999999999999999999999997 66544
No 54
>PRK07236 hypothetical protein; Provisional
Probab=98.90 E-value=2.6e-08 Score=86.88 Aligned_cols=35 Identities=34% Similarity=0.555 Sum_probs=32.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+...+|+|||||++||++|+.|+++|++|+|||+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence 34578999999999999999999999999999996
No 55
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.89 E-value=3.3e-09 Score=94.48 Aligned_cols=99 Identities=19% Similarity=0.298 Sum_probs=72.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhh
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVL 141 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~ 141 (189)
..++++|||||++|+++|+.|++.|++|.++|++ +.+||+|.... ..+...|.... .-.+.|.++-
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKe-psiGGrmak~~--k~FP~~dcs~C---~LaP~m~~v~-------- 188 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKE-PSIGGRMAKLN--KTFPTNDCSIC---ILAPKMVEVS-------- 188 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecC-CcccccHHhhh--ccCCCcccchh---hccchhhhhc--------
Confidence 4678999999999999999999999999999998 99999986532 11111222211 1222232210
Q ss_pred hcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557 142 LLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW 187 (189)
Q Consensus 142 ~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~ 187 (189)
.-+++++.+.++|+.|...-+.|+|......+|
T Consensus 189 -------------~hp~i~l~TyaeV~ev~G~vGnF~vki~kkpry 221 (622)
T COG1148 189 -------------NHPNIELITYAEVEEVSGSVGNFTVKIEKKPRY 221 (622)
T ss_pred -------------cCCceeeeeeeeeeeecccccceEEEEeccccc
Confidence 013789999999999998888899987766655
No 56
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.88 E-value=1.1e-08 Score=83.21 Aligned_cols=42 Identities=33% Similarity=0.352 Sum_probs=34.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
...||+|||+||+||+||++|++.|++|+|||+. ..+||.++
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~-~~~GGg~~ 57 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERK-LSPGGGMW 57 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESS-SS-BTTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecC-CCCCcccc
Confidence 3578999999999999999999999999999997 88887753
No 57
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.88 E-value=6.7e-08 Score=90.29 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=33.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE 100 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g 100 (189)
..+|+|||||++|+++|+.|+++|++|+|+|+. ..++
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~-~~~~ 296 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEAD-EAPA 296 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecC-CCcc
Confidence 369999999999999999999999999999986 4443
No 58
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.88 E-value=5.4e-09 Score=94.16 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=51.4
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeee-eCCcceeeecceeeEeeCCchhHHH
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRM-IGRQPLIFDHATQFFTVNDSRFGEL 132 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~ 132 (189)
+|+|||||++||++|+.|++.|++|+|||+. +.+||++.+.. .++ ..+|.|.+++....+.+.++
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~-~~~GG~~~~~~~~~g--~~~d~G~~~~~~~~~~~~~~ 66 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESR-SFIGGKVGSWVDGDG--NHIEMGLHVFFGCYANLFRL 66 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEec-CCCCceeeeeecCCC--ceEeeceEEecCchHHHHHH
Confidence 5899999999999999999999999999998 99999988753 233 24777877776544444333
No 59
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.87 E-value=1.8e-08 Score=91.54 Aligned_cols=101 Identities=13% Similarity=0.207 Sum_probs=65.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhh
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVV 140 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~ 140 (189)
...+||+|||||++||++|..|++.|++|+|++. .+||++.... . +. .+.........++.+.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~---~~GG~~~~~~--~----~~---~~~~~~~~~~~~l~~~l---- 273 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE---RIGGQVKDTV--G----IE---NLISVPYTTGSQLAANL---- 273 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec---CCCCccccCc--C----cc---cccccCCCCHHHHHHHH----
Confidence 3468999999999999999999999999999974 5788764211 0 00 00000001111111111
Q ss_pred hhcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557 141 LLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW 187 (189)
Q Consensus 141 ~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~ 187 (189)
.+.+.. .+++++++++|++++..++.|.+.+.++..+
T Consensus 274 --------~~~l~~--~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i 310 (515)
T TIGR03140 274 --------EEHIKQ--YPIDLMENQRAKKIETEDGLIVVTLESGEVL 310 (515)
T ss_pred --------HHHHHH--hCCeEEcCCEEEEEEecCCeEEEEECCCCEE
Confidence 122222 2789999999999998878888887665443
No 60
>PRK09126 hypothetical protein; Provisional
Probab=98.86 E-value=1.8e-08 Score=87.69 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=32.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD 98 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~ 98 (189)
..+|+||||||+|+++|+.|+++|++|+|||+. +.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~-~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQ-PL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-Cc
Confidence 578999999999999999999999999999996 54
No 61
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.85 E-value=3.1e-08 Score=88.07 Aligned_cols=38 Identities=26% Similarity=0.339 Sum_probs=34.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
.+||+||||||+|+++|+.|+++|++|+|+|+. ..+|.
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~-~~~g~ 42 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERG-NSAGA 42 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcC-CCCCC
Confidence 589999999999999999999999999999997 66553
No 62
>PRK06847 hypothetical protein; Provisional
Probab=98.85 E-value=4.8e-08 Score=84.40 Aligned_cols=35 Identities=29% Similarity=0.664 Sum_probs=32.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD 98 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~ 98 (189)
..+|+|||||++||++|..|++.|++|+|||+. +.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~-~~ 38 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEID-PE 38 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecC-CC
Confidence 568999999999999999999999999999986 54
No 63
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.85 E-value=2.3e-08 Score=87.95 Aligned_cols=41 Identities=29% Similarity=0.373 Sum_probs=37.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
..+||+||||||||++||+.|+++|++|+|||+. ..+|...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~-~~~G~k~ 42 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKG-SEPGAKP 42 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecC-CCCCCCc
Confidence 3579999999999999999999999999999997 7777653
No 64
>PLN02487 zeta-carotene desaturase
Probab=98.84 E-value=1.6e-08 Score=93.10 Aligned_cols=59 Identities=22% Similarity=0.388 Sum_probs=48.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee-CCcceeeecceeeEee
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI-GRQPLIFDHATQFFTV 124 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~-~~~~~~~~~g~~~~~~ 124 (189)
.++|+|||+|++||++|+.|++.|++|+|||+. +.+||++.+... .+ ..++.|.+++..
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~-~~~gG~~~s~~~~~g--~~~e~G~h~~~~ 134 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR-PFIGGKVGSFVDKNG--NHIEMGLHVFFG 134 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecC-CCCCCceeeeeecCC--cEEecceeEecC
Confidence 359999999999999999999999999999997 999999877642 22 235667666543
No 65
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.83 E-value=2.4e-08 Score=83.37 Aligned_cols=41 Identities=34% Similarity=0.477 Sum_probs=37.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
...||+|||||++||++|+.|++.|++|+|+|+. ..+||.+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~-~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERK-LSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecC-CCCCCcc
Confidence 3579999999999999999999999999999997 7887764
No 66
>PRK05868 hypothetical protein; Validated
Probab=98.82 E-value=5.3e-08 Score=84.90 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=32.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
++|+|||||++||++|+.|+++|++|+|||+. +.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~-~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERH-PGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCC-CCC
Confidence 47999999999999999999999999999986 554
No 67
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.82 E-value=5.7e-09 Score=94.11 Aligned_cols=44 Identities=25% Similarity=0.218 Sum_probs=40.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI 108 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~ 108 (189)
.||+|||+|++||++|..|+++|++|+|+|++ ..+||++.+...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~-~~~GG~~~~~~~ 44 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERY-LIPGGSAGYFER 44 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECC-CCCCCceeEecc
Confidence 47999999999999999999999999999998 999999887554
No 68
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.81 E-value=4.6e-08 Score=85.17 Aligned_cols=38 Identities=32% Similarity=0.607 Sum_probs=33.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE 100 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g 100 (189)
...+|+|||||++||++|..|++.|++|+|||+. +.++
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~-~~~~ 40 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQA-AEIG 40 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeC-cccc
Confidence 3578999999999999999999999999999996 5543
No 69
>PRK10015 oxidoreductase; Provisional
Probab=98.81 E-value=2.5e-08 Score=88.71 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=33.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE 100 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g 100 (189)
.+||+||||||+|+++|+.|+++|++|+|+|+. +.+|
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~-~~~g 41 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERG-DSAG 41 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-CCCC
Confidence 579999999999999999999999999999997 5543
No 70
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.81 E-value=1.3e-08 Score=90.53 Aligned_cols=72 Identities=25% Similarity=0.379 Sum_probs=59.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEee-CCchhHHHHHHH
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTV-NDSRFGELVDVC 136 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~l~~~ 136 (189)
..++|+|||||+|||+||..|.+.| ..|+|||.. +.+|||+.+..+... .++.|++|++. .+....++.++.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~-dRIGGRI~ti~~~d~--~ielGAqwihG~~gNpVY~la~~~ 93 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEAS-DRIGGRIHTIPFADG--VIELGAQWIHGEEGNPVYELAKEY 93 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEec-cccCceEeeEEcCCC--eEeecceeecCCCCChHHHHHHHh
Confidence 3568999999999999999999776 579999998 999999998776543 48899999997 566666655544
No 71
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5.7e-08 Score=83.07 Aligned_cols=98 Identities=21% Similarity=0.230 Sum_probs=63.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCCCcCceeee-eCCcceeeecceeeEeeCCchhHHHHHHHhhh
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMGNPDLEGRMGTRM-IGRQPLIFDHATQFFTVNDSRFGELVDVCWKV 139 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~~~~~gg~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~ 139 (189)
..+||+||||||+||+||.++++.+++ ++|+|+ ..+||++.... +..++ .+..+ ....++++.+...
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~--~~~gg~~~~~~~venyp-g~~~~--------~~g~~L~~~~~~~ 70 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEG--GEPGGQLTKTTDVENYP-GFPGG--------ILGPELMEQMKEQ 70 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEec--CCcCCccccceeecCCC-CCccC--------CchHHHHHHHHHH
Confidence 357999999999999999999999998 666676 57888765433 22221 11111 1222333332221
Q ss_pred hhhcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCee
Q 041557 140 VLLLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKT 185 (189)
Q Consensus 140 ~~~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~ 185 (189)
. ...++++.. ..|..++..++.|.|.+.++.
T Consensus 71 a--------------~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~ 101 (305)
T COG0492 71 A--------------EKFGVEIVE-DEVEKVELEGGPFKVKTDKGT 101 (305)
T ss_pred H--------------hhcCeEEEE-EEEEEEeecCceEEEEECCCe
Confidence 1 012667776 788888766658999988876
No 72
>PLN02529 lysine-specific histone demethylase 1
Probab=98.80 E-value=1.7e-08 Score=95.15 Aligned_cols=63 Identities=32% Similarity=0.327 Sum_probs=53.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCC--cceeeecceeeEee
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGR--QPLIFDHATQFFTV 124 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~--~~~~~~~g~~~~~~ 124 (189)
...++|+|||||++||++|..|+++|++|+|||+. +.+||++.+..... ....+|.|+++++.
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~-~~~GG~~~t~~~~~~g~~~~~DlGaswi~g 222 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGR-NRPGGRVYTQKMGRKGQFAAVDLGGSVITG 222 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecC-ccCcCceeeecccCCCCceEEecCCeeccc
Confidence 35678999999999999999999999999999997 99999998876531 11357888888874
No 73
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.80 E-value=6.3e-09 Score=91.09 Aligned_cols=33 Identities=33% Similarity=0.472 Sum_probs=31.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..+|+||||||+||++|..|++.|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 468999999999999999999999999999995
No 74
>PRK08013 oxidoreductase; Provisional
Probab=98.80 E-value=2.9e-08 Score=87.10 Aligned_cols=35 Identities=34% Similarity=0.464 Sum_probs=32.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD 98 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~ 98 (189)
..||+||||||+|+++|+.|+++|++|+|+|+. +.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~-~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQR-VP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCC-CC
Confidence 478999999999999999999999999999996 54
No 75
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.79 E-value=3.8e-08 Score=84.89 Aligned_cols=34 Identities=38% Similarity=0.632 Sum_probs=31.7
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
||+|||||++||++|+.|+++|++|+|||+. +.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~-~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEAT-PAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCC-Ccc
Confidence 6999999999999999999999999999997 654
No 76
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.79 E-value=3.8e-08 Score=86.21 Aligned_cols=33 Identities=33% Similarity=0.486 Sum_probs=31.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+||+|||||++||++|+.|+++|++|+|||+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~ 34 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGG 34 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCC
Confidence 468999999999999999999999999999996
No 77
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.78 E-value=1.1e-07 Score=82.86 Aligned_cols=33 Identities=33% Similarity=0.546 Sum_probs=31.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+||+|||||++|+++|..|+++|++|+|||+.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~ 37 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHA 37 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCC
Confidence 478999999999999999999999999999986
No 78
>PLN02676 polyamine oxidase
Probab=98.78 E-value=2.2e-08 Score=90.61 Aligned_cols=60 Identities=20% Similarity=0.411 Sum_probs=50.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCCcCceeeeeCCcceeeecceeeEe
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFT 123 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~ 123 (189)
...++|+|||||++||++|+.|+++|. +|+|+|+. +.+||++.+....+ ..+|.|+++++
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~-~~~GG~~~~~~~~g--~~~d~g~~~~~ 84 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEAT-DRIGGRMRKANFAG--VSVELGANWVE 84 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCC-CCCCCcceeecCCC--eEEecCCEEEE
Confidence 346789999999999999999999998 59999997 99999998765543 24677777774
No 79
>PRK11445 putative oxidoreductase; Provisional
Probab=98.78 E-value=2.9e-08 Score=85.80 Aligned_cols=33 Identities=33% Similarity=0.204 Sum_probs=30.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD 98 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~ 98 (189)
+||+||||||+|+++|..|++. ++|+|+|+. +.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~-~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKK-HQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECC-Cc
Confidence 5899999999999999999999 999999986 53
No 80
>PRK06834 hypothetical protein; Provisional
Probab=98.77 E-value=8.9e-08 Score=86.60 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=33.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD 98 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~ 98 (189)
...+|+||||||+||++|..|+++|++|+|+|+. +.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~-~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERR-PN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CC
Confidence 3578999999999999999999999999999996 54
No 81
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.77 E-value=3.1e-08 Score=86.77 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=33.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
..++|+|||||++||++|..|+++|++|+|||+. +..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~-~~~ 53 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQ-PAE 53 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecC-Ccc
Confidence 4678999999999999999999999999999996 543
No 82
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.77 E-value=5.6e-08 Score=85.56 Aligned_cols=35 Identities=40% Similarity=0.662 Sum_probs=31.5
Q ss_pred CEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCCC
Q 041557 65 HVKIIGGGMAVLACALRLDKRG-VKSNVFDMGNPDLE 100 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~~~~~g 100 (189)
+|+|||||++||++|+.|+++| ++|+|||+. +.++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~-~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAA-PAFG 37 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecC-CcCC
Confidence 6999999999999999999998 599999996 6643
No 83
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.77 E-value=6.4e-08 Score=84.44 Aligned_cols=36 Identities=31% Similarity=0.500 Sum_probs=33.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD 98 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~ 98 (189)
...+|+||||||+|+++|+.|+++|++|+|+|+. +.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~-~~ 40 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGR-EP 40 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCC-CC
Confidence 4578999999999999999999999999999996 53
No 84
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.76 E-value=8.3e-08 Score=84.16 Aligned_cols=35 Identities=31% Similarity=0.456 Sum_probs=32.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
.+|+|||||++||++|+.|+++|++|+|||+. +.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~-~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKA-QEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecC-Ccc
Confidence 68999999999999999999999999999986 543
No 85
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.76 E-value=1.3e-07 Score=82.20 Aligned_cols=34 Identities=35% Similarity=0.461 Sum_probs=31.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc---CCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR---GVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~---g~~v~v~e~~ 95 (189)
...+|+|||||++|+++|+.|+++ |++|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 457899999999999999999998 9999999984
No 86
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.75 E-value=1.6e-07 Score=85.64 Aligned_cols=39 Identities=31% Similarity=0.382 Sum_probs=34.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE 100 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g 100 (189)
....+|+|||||++||++|..|+++|++|+|||+. +.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~-~~~~ 46 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERW-PTLY 46 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCC
Confidence 45679999999999999999999999999999997 6543
No 87
>PRK06184 hypothetical protein; Provisional
Probab=98.74 E-value=2.2e-07 Score=83.94 Aligned_cols=36 Identities=31% Similarity=0.538 Sum_probs=33.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
..+|+||||||+||++|..|+++|++|+|||+. +.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~-~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKA-PEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CCC
Confidence 578999999999999999999999999999996 554
No 88
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.73 E-value=3.9e-08 Score=86.33 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=50.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHH
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGEL 132 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 132 (189)
.||+|||||++||++|+.|++.|.+|+|+|+. +.+||.+.+....+ .+..+.|++++...+..+.++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~-~~iGG~~~~~~~~g-~~~~~~G~h~f~t~~~~v~~~ 68 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKR-NHIGGNCYDEVDET-ILFHQYGPHIFHTNNQYVWDY 68 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCCceeeecCCC-ceEEeecceeEecCcHHHHHH
Confidence 47999999999999999999999999999997 89999876543322 223466777776555544433
No 89
>PRK07190 hypothetical protein; Provisional
Probab=98.73 E-value=1.7e-07 Score=84.82 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=33.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
..+|+||||||+||++|..|+++|++|+|+|+. +.+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~-~~~ 40 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKS-DGP 40 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCC-Ccc
Confidence 468999999999999999999999999999996 554
No 90
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.73 E-value=2.9e-07 Score=80.52 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=33.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCCc
Q 041557 64 PHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLEG 101 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~gg 101 (189)
.||+|||||++|+++|+.|+++ |++|+|+|+. ..+++
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~-~~~~~ 41 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKE-SGPAR 41 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCC-Ccccc
Confidence 6899999999999999999999 9999999996 55543
No 91
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.73 E-value=1.6e-07 Score=81.38 Aligned_cols=31 Identities=35% Similarity=0.630 Sum_probs=30.0
Q ss_pred CEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRG-VKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~ 95 (189)
||+||||||+|+++|..|+++| ++|+|||+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~ 32 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEAN 32 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCC
Confidence 6999999999999999999999 999999986
No 92
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.72 E-value=3.7e-08 Score=93.55 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=50.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcc--eeeecceeeEe
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQP--LIFDHATQFFT 123 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~--~~~~~g~~~~~ 123 (189)
..++|+|||||++||++|+.|+++|++|+|+|+. ..+||++.+....+.. ..+|.|+++++
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~-~r~GGr~~t~~~~g~~~~~~~d~Gas~i~ 299 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGR-ARPGGRVKTMKMKGDGVVAAADLGGSVLT 299 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecc-ccCCCcccccccCCCCcceeccCCceeec
Confidence 4678999999999999999999999999999997 9999999876654321 23566666655
No 93
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.72 E-value=1.2e-07 Score=87.13 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=36.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
.+||+|||||++||++|..|+++|++|+|||++ ..||.+.
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~--~~GG~~~ 43 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD--DFGGQIT 43 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC--CCCceEE
Confidence 479999999999999999999999999999984 6888764
No 94
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.72 E-value=6.9e-08 Score=83.94 Aligned_cols=37 Identities=30% Similarity=0.508 Sum_probs=33.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
...||+|||||++|+++|+.|+++|++|+|||+. +.+
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~-~~~ 42 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPE-PPY 42 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCC-CCC
Confidence 4578999999999999999999999999999996 543
No 95
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.72 E-value=1.4e-07 Score=82.42 Aligned_cols=34 Identities=35% Similarity=0.467 Sum_probs=31.1
Q ss_pred CEEEECCCHHHHHHHHHH--HHcCCeEEEEecCCCCC
Q 041557 65 HVKIIGGGMAVLACALRL--DKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l--~~~g~~v~v~e~~~~~~ 99 (189)
||+|||||+|||++|+.| ++.|.+|+|+|+. +..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~-~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPK-PKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-ccc
Confidence 799999999999999999 8889999999986 554
No 96
>PRK10262 thioredoxin reductase; Provisional
Probab=98.71 E-value=1.4e-07 Score=80.37 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=37.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCcee
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT 105 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~ 105 (189)
..++|+|||||++||++|..|+++|+++++||+ ...||.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~--~~~gg~~~~ 46 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITG--MEKGGQLTT 46 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe--ecCCCceec
Confidence 468899999999999999999999999999996 467887643
No 97
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.71 E-value=4.5e-08 Score=85.40 Aligned_cols=33 Identities=33% Similarity=0.546 Sum_probs=31.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..||+||||||+|+++|..|+++|++|+|||+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCC
Confidence 368999999999999999999999999999985
No 98
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.71 E-value=1.7e-07 Score=81.67 Aligned_cols=34 Identities=35% Similarity=0.481 Sum_probs=31.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPD 98 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~ 98 (189)
+||+||||||+||++|..|+++| ++|+|||+. +.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~-~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAA-PA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCC-Cc
Confidence 58999999999999999999996 999999996 54
No 99
>PRK07045 putative monooxygenase; Reviewed
Probab=98.70 E-value=2e-07 Score=81.23 Aligned_cols=36 Identities=31% Similarity=0.289 Sum_probs=32.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
..+|+||||||+||++|+.|+++|++|+|||+. +.+
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~-~~~ 40 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERA-ARN 40 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCC-Ccc
Confidence 468999999999999999999999999999986 544
No 100
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.70 E-value=2.6e-07 Score=82.19 Aligned_cols=40 Identities=23% Similarity=0.320 Sum_probs=35.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~ 102 (189)
...||+|||||+.|+++|+.|.+.+ ++|+|+||. ..++.-
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~-~~~a~~ 43 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKE-DGVAQE 43 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEcc-Cccccc
Confidence 3579999999999999999999999 999999997 776644
No 101
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.69 E-value=6.3e-08 Score=82.67 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=59.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeC-CcceeeecceeeEeeCCchhHHHHHHHh
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIG-RQPLIFDHATQFFTVNDSRFGELVDVCW 137 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~l~~~~ 137 (189)
.|++|||+|++|+.+|..|+++|.+|+|+|+. +.+||.+.+...+ ...+....|++.|+..+....+++..+.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR-~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~ 75 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKR-NHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFT 75 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEecc-ccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhh
Confidence 58999999999999999999999999999996 9999998776554 2234456699999998887766655443
No 102
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.69 E-value=2.4e-07 Score=80.58 Aligned_cols=37 Identities=35% Similarity=0.645 Sum_probs=33.6
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
||+|||||++|+++|+.|++.|++|+|+|+. +..++.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~-~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPH-PPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CCCCCC
Confidence 6999999999999999999999999999997 666653
No 103
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.68 E-value=1.7e-07 Score=82.31 Aligned_cols=33 Identities=36% Similarity=0.481 Sum_probs=31.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+||+||||||+||++|..|+++|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 578999999999999999999999999999984
No 104
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.68 E-value=4.3e-07 Score=78.81 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=33.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
..+|+|||||++||++|+.|++.|++|+|+|+. +.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~-~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPR-APP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-CCc
Confidence 468999999999999999999999999999997 554
No 105
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.65 E-value=6.2e-08 Score=83.57 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=51.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee--CCcceeeecceeeEee-CCchhHHHHH
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI--GRQPLIFDHATQFFTV-NDSRFGELVD 134 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~--~~~~~~~~~g~~~~~~-~~~~~~~~l~ 134 (189)
+..+|+|||+|++||+||+.|+++ ++|++||.+ ..+||...|... +......|.|...+.. ..+.+..+++
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~-~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~ 80 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEAD-RRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFK 80 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEecc-ccccCccceeeccccCCceeecceeEEecCCCcchHHHHHH
Confidence 456799999999999999999876 799999998 999999988764 2333456666555543 3344444443
No 106
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.65 E-value=1.3e-07 Score=83.35 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=33.1
Q ss_pred EEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 67 KIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 67 ~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
+|||||++||++|+.|+++|++|+|+|+. +.+|+.+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~-~~~G~k~ 36 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKN-KKIGKKL 36 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecC-ccccccc
Confidence 59999999999999999999999999997 8887754
No 107
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.64 E-value=7.2e-08 Score=85.46 Aligned_cols=47 Identities=28% Similarity=0.419 Sum_probs=43.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI 108 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~ 108 (189)
....+|+|+|+|++||++|+.|.+.||+|+|+|.. +.+|||+.+.+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar-~r~GGR~~t~r~ 51 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEAR-DRVGGRSLTARA 51 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEecc-CCcCceeEEEec
Confidence 45789999999999999999999999999999996 999999887655
No 108
>PRK08244 hypothetical protein; Provisional
Probab=98.64 E-value=4.1e-07 Score=81.96 Aligned_cols=36 Identities=36% Similarity=0.370 Sum_probs=32.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
..+|+||||||+||++|..|+++|++|+|||+. +.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~-~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERL-KET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCC
Confidence 468999999999999999999999999999996 543
No 109
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.60 E-value=4.9e-07 Score=69.71 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=68.2
Q ss_pred EEECCCHHHHHHHHHHHHc-----CCeEEEEecCCCCCC-cC-ceeeeeCCcceeeecceeeEeeC---C-chhHHHHHH
Q 041557 67 KIIGGGMAVLACALRLDKR-----GVKSNVFDMGNPDLE-GR-MGTRMIGRQPLIFDHATQFFTVN---D-SRFGELVDV 135 (189)
Q Consensus 67 ~IiG~G~~Gl~~A~~l~~~-----g~~v~v~e~~~~~~g-g~-~~~~~~~~~~~~~~~g~~~~~~~---~-~~~~~~l~~ 135 (189)
+|||+|++|++++..|.++ ..+|+|||+. +. | |. +.+..... ...+..+...+.. . ..|.++++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~-~~-G~G~~~~~~~~~~--~llN~~a~~~s~~~~~~~~~f~~Wl~~ 76 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPS-PF-GAGGAYRPDQPPS--HLLNTPADQMSLFPDDPGDDFVDWLRA 76 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCC-Cc-cccccCCCCCChH--HhhcccccccccccccCCCCHHHHHHh
Confidence 6999999999999999888 4689999996 44 4 43 32321111 1223333333321 1 456655554
Q ss_pred Hhhh--hhhc--Cc----------hHHHHHH-hccCCCcEEE-eCceeEEEEEeCCeEEEEeCCeeeee
Q 041557 136 CWKV--VLLL--GY----------SKSQNLN-IFQTSKVNVV-RTCWISNLEPFNGMWYLGENGKTAWA 188 (189)
Q Consensus 136 ~~~~--~~~~--~~----------~~~~~~l-~~~~~~v~v~-~~t~V~~i~~~~~~w~l~~~~~~~~~ 188 (189)
-..+ .... .+ .+..+.+ ..++.+++|. ...+|++|+..+++|.|.+.++..+.
T Consensus 77 ~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~ 145 (156)
T PF13454_consen 77 NGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIR 145 (156)
T ss_pred cCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEE
Confidence 2210 0011 11 1112222 2234565544 47799999999999999888876653
No 110
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.59 E-value=4.3e-07 Score=79.07 Aligned_cols=32 Identities=25% Similarity=0.593 Sum_probs=30.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.||+||||||+|+++|+.|++.|++|+|||+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 47999999999999999999999999999985
No 111
>PLN03000 amine oxidase
Probab=98.59 E-value=1.8e-07 Score=89.41 Aligned_cols=63 Identities=27% Similarity=0.304 Sum_probs=53.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCc--ceeeecceeeEeeC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQ--PLIFDHATQFFTVN 125 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~--~~~~~~g~~~~~~~ 125 (189)
..++|+|||||++||.+|+.|.+.|++|+|||+. +.+||++.+.+.... ...+|.|+++++..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~-~riGGRi~T~~~~g~~~~~~~DlGas~i~g~ 247 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGR-KRPGGRVYTKKMEANRVGAAADLGGSVLTGT 247 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEcc-CcCCCCcceecccCCCCceEeecCCeEEeCC
Confidence 4688999999999999999999999999999997 999999998775431 23578888888743
No 112
>PLN02463 lycopene beta cyclase
Probab=98.58 E-value=9.1e-07 Score=79.38 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=32.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...||+|||||++|+++|..|+++|++|+|+|+.
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~ 60 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPS 60 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccC
Confidence 4579999999999999999999999999999986
No 113
>PRK09897 hypothetical protein; Provisional
Probab=98.58 E-value=4.5e-07 Score=82.98 Aligned_cols=38 Identities=13% Similarity=0.256 Sum_probs=32.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGR 102 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~ 102 (189)
++|+|||||++|+++|..|.+.+ ++|+|||+. ..+|..
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~-~~~G~G 41 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQA-DEAGVG 41 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecC-CCCCcc
Confidence 47999999999999999998865 489999997 778743
No 114
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.57 E-value=9e-07 Score=80.88 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=33.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
...+|+||||||+||++|+.|+++|++|+|||+. +.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~-~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDD-DTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-CCC
Confidence 4678999999999999999999999999999997 654
No 115
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.55 E-value=1e-06 Score=77.10 Aligned_cols=35 Identities=31% Similarity=0.367 Sum_probs=32.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD 98 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~ 98 (189)
..+|+||||||+||++|+.|++.|++|+|||+. +.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~-~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERR-SR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcC-Cc
Confidence 468999999999999999999999999999996 53
No 116
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.53 E-value=2.6e-07 Score=84.82 Aligned_cols=44 Identities=27% Similarity=0.343 Sum_probs=39.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCCCCcCceee
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR----GVKSNVFDMGNPDLEGRMGTR 106 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~----g~~v~v~e~~~~~~gg~~~~~ 106 (189)
..++++|||||++||++|..|.+. |++|+|||+. +.+||++.+.
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~-~~~GG~~~~~ 68 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEEL-DVPGGSLDGA 68 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCC-CCCCCCccCc
Confidence 357899999999999999999996 6899999998 9999998753
No 117
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.52 E-value=1.6e-07 Score=85.14 Aligned_cols=44 Identities=27% Similarity=0.325 Sum_probs=39.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCCCcCce
Q 041557 60 ISSNPHVKIIGGGMAVLACALRLDK--RGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 60 ~~~~~~v~IiG~G~~Gl~~A~~l~~--~g~~v~v~e~~~~~~gg~~~ 104 (189)
....++|+|||+||+||.+|..|++ .|++|+|||+. +.+||.+.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~-p~pgGlvr 68 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERL-PTPFGLVR 68 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecC-CCCcceEe
Confidence 3456789999999999999999987 79999999997 99999865
No 118
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.50 E-value=1.5e-07 Score=79.48 Aligned_cols=35 Identities=37% Similarity=0.573 Sum_probs=30.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
.+|+|||||++||++|+.|+++|++|+|||+. +.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~-~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERR-PDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESS-SSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhc-ccc
Confidence 47999999999999999999999999999996 443
No 119
>PRK06996 hypothetical protein; Provisional
Probab=98.48 E-value=2.8e-06 Score=74.52 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=31.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcC----CeEEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRG----VKSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g----~~v~v~e~~ 95 (189)
...++|+||||||+|+++|+.|++.| ++|+|+|+.
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~ 47 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAR 47 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCC
Confidence 35679999999999999999999987 479999985
No 120
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.46 E-value=1.2e-06 Score=76.54 Aligned_cols=37 Identities=32% Similarity=0.549 Sum_probs=33.8
Q ss_pred CEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCCcC
Q 041557 65 HVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~gg~ 102 (189)
||+|||||++||++|+.|++. |++|+|+|+. +..+|.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~-~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAG-RTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC-CCCCCc
Confidence 699999999999999999987 9999999997 777764
No 121
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.45 E-value=2.6e-07 Score=82.46 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=38.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
..+||+|||||++|+.+|..|+++|++|+|||+. +.+||.+
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~-~~~GG~~ 44 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERY-RNVGGGC 44 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecc-ccccccc
Confidence 4589999999999999999999999999999996 7899976
No 122
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=98.45 E-value=4.5e-07 Score=79.95 Aligned_cols=64 Identities=22% Similarity=0.443 Sum_probs=52.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCe--EEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVK--SNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDS 127 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~--v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~ 127 (189)
...+|+|+|||++||++|++|++++-+ ++|||+. +.+||.+.+.+... .+.|+.|+.-+....+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~-~RvGGwirS~r~~n-g~ifE~GPrtlrpag~ 75 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEAS-PRVGGWIRSDRMQN-GFIFEEGPRTLRPAGP 75 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecC-CcccceeeeccCCC-ceeeccCCCccCcCCc
Confidence 457899999999999999999999876 4669998 99999998843332 3578888887776665
No 123
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.41 E-value=3.5e-07 Score=82.13 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=37.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
.+||+|||+||+|+.+|..++++|++|+|+|+. ..+||.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~-~~~GG~c 42 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR-STLGGTC 42 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-Cceeeee
Confidence 479999999999999999999999999999985 6899975
No 124
>PLN02697 lycopene epsilon cyclase
Probab=98.41 E-value=4.4e-06 Score=76.44 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=31.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..||+|||||++||++|..|++.|++|+|+|+.
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 579999999999999999999999999999985
No 125
>PLN02661 Putative thiazole synthesis
Probab=98.39 E-value=1.3e-06 Score=76.01 Aligned_cols=41 Identities=32% Similarity=0.520 Sum_probs=36.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCCCcCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~~~~~gg~~ 103 (189)
...||+|||+|++||++|+.|++. |++|+|+|+. ..+||..
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~-~~~GGG~ 132 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQS-VSPGGGA 132 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecC-cccccce
Confidence 467999999999999999999986 8999999997 7887743
No 126
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.38 E-value=9.2e-07 Score=75.75 Aligned_cols=62 Identities=24% Similarity=0.284 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHH
Q 041557 73 MAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDV 135 (189)
Q Consensus 73 ~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~ 135 (189)
++||+||+.|+++|++|+|||+. +.+||++.+.+.......+|.|++++......+..++.+
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~-~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~ 62 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEAS-DRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDE 62 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESS-SSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHH
T ss_pred ChHHHHHHHHHhCCCCEEEEEcC-CCCCcceEEecCCccceeecCCcccccccchhhHHHHHH
Confidence 68999999999999999999998 999999999888721246999999998655555544444
No 127
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.37 E-value=6.5e-07 Score=80.22 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=41.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceee
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTR 106 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~ 106 (189)
+..+||+|||+|++|+.+|..|++.|++|+++|++ +..||++++.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n-~~yGG~~as~ 46 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRN-PYYGGESASL 46 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCC-CCcCcccccc
Confidence 34689999999999999999999999999999998 9999998865
No 128
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.37 E-value=4.3e-07 Score=80.84 Aligned_cols=40 Identities=30% Similarity=0.443 Sum_probs=33.5
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCcee
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT 105 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~ 105 (189)
||+|||||++|++||+.+++.|.+|+|+|+. ..+||.+..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~-~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKG-GFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SS-SSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECC-ccCCCcceE
Confidence 6999999999999999999999999999998 999998654
No 129
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.37 E-value=5.2e-07 Score=80.22 Aligned_cols=40 Identities=25% Similarity=0.247 Sum_probs=36.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC-CCCcCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNP-DLEGRM 103 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~-~~gg~~ 103 (189)
.+||+|||||++|+.+|..|+++|++|+|+|+. + ..||.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~-~~~~GG~~ 43 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQS-NAMYGGTC 43 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCC-CCccceeE
Confidence 579999999999999999999999999999986 5 478865
No 130
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.36 E-value=5.9e-07 Score=79.84 Aligned_cols=39 Identities=23% Similarity=0.249 Sum_probs=35.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC-CCcC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD-LEGR 102 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~-~gg~ 102 (189)
.+||+|||||++|+++|..|+++|++|+|||+. +. +||.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~-~~~~GG~ 42 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEES-KAMYGGT 42 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecC-Cccccee
Confidence 579999999999999999999999999999996 54 5875
No 131
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.35 E-value=5.1e-07 Score=78.94 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=30.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+||+||||||+|+++|+.|++.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 48999999999999999999999999999984
No 132
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.35 E-value=6.8e-07 Score=77.26 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=30.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+||+|||||++|+++|+.|+++|++|+|+|+.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~ 32 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF 32 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 47999999999999999999999999999996
No 133
>PRK06116 glutathione reductase; Validated
Probab=98.34 E-value=6.1e-07 Score=79.98 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=35.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
.+||+|||||++|+++|..|+++|++|+|+|+. .+||.+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~--~~GG~c 42 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK--RLGGTC 42 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc--chhhhh
Confidence 579999999999999999999999999999984 788864
No 134
>PLN02976 amine oxidase
Probab=98.34 E-value=1e-06 Score=87.49 Aligned_cols=60 Identities=22% Similarity=0.347 Sum_probs=48.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEe
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFT 123 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~ 123 (189)
..++|+|||+|++|+++|+.|++.|++|+|||+. +.+||++.+.+... .+.+|.|+++++
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~-~~vGGri~t~~~~~-g~pvDlGas~i~ 751 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEAR-SRIGGRVYTDRSSL-SVPVDLGASIIT 751 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeec-cCCCCceeeccccC-CceeccCcEEEe
Confidence 4578999999999999999999999999999997 99999988765321 123566666655
No 135
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.34 E-value=5.8e-07 Score=80.31 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=36.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
..+||+|||||++|+++|..|+++|++|+|+|+. . +||.+.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~-~-~GG~c~ 43 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKE-K-LGGTCL 43 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEecc-c-ccccee
Confidence 3579999999999999999999999999999986 5 899753
No 136
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.34 E-value=7.6e-07 Score=80.53 Aligned_cols=44 Identities=30% Similarity=0.424 Sum_probs=38.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHH-HcCCeEEEEecCCCCCCcCcee
Q 041557 61 SSNPHVKIIGGGMAVLACALRLD-KRGVKSNVFDMGNPDLEGRMGT 105 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~-~~g~~v~v~e~~~~~~gg~~~~ 105 (189)
...++|+||||||+||.+|..|. +.|++|+|||+. +.+||.+..
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~-p~pgGLvR~ 81 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKL-PNPYGLIRY 81 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecC-CCCccEEEE
Confidence 35678999999999999999764 679999999997 999999764
No 137
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.34 E-value=6.3e-07 Score=80.22 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=36.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
.+||+|||||++|+++|..|+++|++|+|+|+. .+||.+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~--~~GG~c 40 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK--KLGGTC 40 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc--ccccce
Confidence 579999999999999999999999999999984 689865
No 138
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.34 E-value=5.9e-07 Score=80.15 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=36.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
++||+||||||+|+++|..++++|++|+|+|+ ..+||.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~--~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE--PRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec--CccCceee
Confidence 57999999999999999999999999999998 47899754
No 139
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.33 E-value=7.4e-07 Score=78.21 Aligned_cols=35 Identities=31% Similarity=0.543 Sum_probs=32.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
++|+|||||++|+++|+.|++.|++|+|+|++ +.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~-~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRH-RYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-CCC
Confidence 48999999999999999999999999999997 544
No 140
>PRK06370 mercuric reductase; Validated
Probab=98.33 E-value=8e-07 Score=79.55 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=36.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
+..+||+|||+|++|+++|..|++.|++|+|+|+. .+||.+
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~--~~GG~c 43 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG--LLGGTC 43 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC--ccCCce
Confidence 34689999999999999999999999999999984 667764
No 141
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.32 E-value=9e-07 Score=76.38 Aligned_cols=33 Identities=27% Similarity=0.240 Sum_probs=31.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+||+|||||++|+++|+.|+++|++|+|+|++
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~ 35 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRF 35 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 578999999999999999999999999999996
No 142
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.31 E-value=9.3e-07 Score=76.40 Aligned_cols=34 Identities=38% Similarity=0.615 Sum_probs=32.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...+|+|||||++|+++|+.|+++|.+|+|+|+.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~ 36 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAG 36 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecC
Confidence 4678999999999999999999999999999986
No 143
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.31 E-value=8.7e-07 Score=79.52 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=32.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...+||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~ 71 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERK 71 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 35689999999999999999999999999999986
No 144
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.31 E-value=9.4e-07 Score=79.34 Aligned_cols=41 Identities=29% Similarity=0.465 Sum_probs=37.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
..+||+|||||++|+++|..|+++|++|+|+|+. .+||.+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~--~~GG~c~ 43 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG--KLGGTCL 43 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc--CCCcceE
Confidence 3689999999999999999999999999999984 7898763
No 145
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.30 E-value=1.1e-06 Score=79.74 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=35.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
++...||+|||||++|+++|+.|+++|++|+|+|++ +..+|
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~-d~~~G 43 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKD-DLAQG 43 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECC-CCCCC
Confidence 345689999999999999999999999999999996 54443
No 146
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.30 E-value=7.4e-07 Score=78.30 Aligned_cols=37 Identities=41% Similarity=0.677 Sum_probs=32.7
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
||+|||+|++||+||+.++++|.+|+|+||. +..||.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~-~~~gg~ 37 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKG-PRLGGS 37 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESS-SGGGSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEee-cccccc
Confidence 7999999999999999999999999999998 777774
No 147
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.30 E-value=8.2e-07 Score=77.88 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=32.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD 98 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~ 98 (189)
..+|+|||||++||++|..|+++|++|+|||+. +.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~-~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQ-SR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECC-CC
Confidence 468999999999999999999999999999996 53
No 148
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.30 E-value=1.2e-06 Score=79.76 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=35.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
...+||+|||||+.|+++|+.|+++|++|+|+|++ +..+|
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~-d~~~G 43 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQD-DLASA 43 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecC-CCCCC
Confidence 34689999999999999999999999999999996 55444
No 149
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.29 E-value=1.1e-06 Score=75.80 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=30.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+||+|||||++|+++|+.|+++|++|+|+|+.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~ 32 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERS 32 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47999999999999999999999999999986
No 150
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.29 E-value=1.1e-06 Score=79.03 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=37.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
..+||+|||||++|+.+|..|++.|++|+|+|+. +.+||.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~~GG~c 43 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERY-STLGGVC 43 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecC-Ccccccc
Confidence 3589999999999999999999999999999986 7889965
No 151
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.27 E-value=1.2e-06 Score=77.19 Aligned_cols=34 Identities=29% Similarity=0.516 Sum_probs=31.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD 98 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~ 98 (189)
.||+||||||+|+++|+.|+++|++|+|+|+. ..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~-~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERK-PD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecC-CC
Confidence 47999999999999999999999999999986 44
No 152
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.27 E-value=1.2e-06 Score=78.17 Aligned_cols=38 Identities=29% Similarity=0.421 Sum_probs=35.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
+||+|||||++|+.+|..|+++|++|+|+|+ +.+||.+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~--~~~GG~~ 39 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK--EYLGGTC 39 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec--CCCCCce
Confidence 6899999999999999999999999999998 4788874
No 153
>PRK06185 hypothetical protein; Provisional
Probab=98.27 E-value=1.3e-06 Score=76.39 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=32.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..+||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~ 38 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKH 38 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 4679999999999999999999999999999986
No 154
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.26 E-value=1.2e-06 Score=78.31 Aligned_cols=38 Identities=29% Similarity=0.474 Sum_probs=35.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
+||+|||||++|+++|..|+++|++|+|+|++ .+||.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~--~~GG~c 38 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERG--PLGGTC 38 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC--cccCCe
Confidence 58999999999999999999999999999985 488875
No 155
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.25 E-value=1.6e-06 Score=77.59 Aligned_cols=40 Identities=33% Similarity=0.478 Sum_probs=35.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC--CCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD--LEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~--~gg~ 102 (189)
...||+|||+|++||++|+.|+++|.+|+|+||. +. .||.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~-~~~~~GG~ 44 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAA-PREWRGGN 44 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-CCcCCCcc
Confidence 4679999999999999999999999999999997 53 4554
No 156
>PRK07538 hypothetical protein; Provisional
Probab=98.25 E-value=1.2e-06 Score=77.05 Aligned_cols=34 Identities=44% Similarity=0.778 Sum_probs=31.5
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
+|+|||||++||++|+.|+++|++|+|||+. +.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~-~~~ 35 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAA-PEL 35 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcC-Ccc
Confidence 6999999999999999999999999999996 543
No 157
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.24 E-value=1.6e-06 Score=77.44 Aligned_cols=41 Identities=29% Similarity=0.286 Sum_probs=36.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
..+||+|||||++|+++|..|++.|++|+|+|+ ..+||.+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~--~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK--GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC--Ccccccee
Confidence 357999999999999999999999999999998 46888653
No 158
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.24 E-value=1.8e-06 Score=77.49 Aligned_cols=39 Identities=23% Similarity=0.333 Sum_probs=35.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
.+||+|||+|++|+++|..|+++|++|+|+|++ .+||.+
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~--~~GG~c 42 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK--YWGGVC 42 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC--CCCCce
Confidence 479999999999999999999999999999984 677763
No 159
>PRK14694 putative mercuric reductase; Provisional
Probab=98.24 E-value=1.8e-06 Score=77.57 Aligned_cols=41 Identities=29% Similarity=0.590 Sum_probs=37.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
.++||+|||||++|+++|..|++.|++|+|||++ .+||.+.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~--~~GGtc~ 45 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG--TIGGTCV 45 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc--cccccee
Confidence 4689999999999999999999999999999985 6899864
No 160
>PRK06126 hypothetical protein; Provisional
Probab=98.22 E-value=2e-06 Score=78.45 Aligned_cols=36 Identities=42% Similarity=0.541 Sum_probs=32.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD 98 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~ 98 (189)
...+|+||||||+||++|+.|+++|++|+|||+. +.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~-~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERK-DG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CC
Confidence 4578999999999999999999999999999986 44
No 161
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.22 E-value=3.5e-06 Score=78.54 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=33.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
.+||+|||||+.|+++|+.|+++|++|+|+|++ +..+|
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~-d~a~G 108 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATRGLRVGLVERE-DFSSG 108 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc-ccCCC
Confidence 479999999999999999999999999999996 44444
No 162
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.21 E-value=1.8e-06 Score=76.61 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=34.3
Q ss_pred CEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCCCcC
Q 041557 65 HVKIIGGGMAVLACALRLDKRG-VKSNVFDMGNPDLEGR 102 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~~~~~gg~ 102 (189)
||+|||+|++||++|+.++++| .+|+|+||. +..||.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~-~~~gg~ 38 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKM-PVIGGN 38 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecC-CCCCCc
Confidence 6999999999999999999999 999999997 777765
No 163
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.21 E-value=1.7e-06 Score=75.86 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=31.9
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE 100 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g 100 (189)
+|+|||||++|+++|++|+++|++|+|+|+. ..++
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~-~~~~ 36 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQ-PGPA 36 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCC-Cchh
Confidence 6999999999999999999999999999996 5443
No 164
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.21 E-value=1.8e-06 Score=84.24 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=38.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
.++|+|||||++||++|+.|++.|++|+|||+. +.+||++.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~-~~~GG~~~ 203 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQ-PEAGGSLL 203 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CCCCCeee
Confidence 578999999999999999999999999999997 88998764
No 165
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.20 E-value=2.3e-06 Score=77.74 Aligned_cols=40 Identities=20% Similarity=0.379 Sum_probs=37.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
...||+|||+|.+||++|+.+++.|.+|+|+||. +..||.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~-~~~GG~ 99 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKM-PVAGGN 99 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC-CCCCCc
Confidence 4789999999999999999999999999999997 777775
No 166
>PRK07121 hypothetical protein; Validated
Probab=98.20 E-value=2.2e-06 Score=77.36 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=37.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
...||+|||+|.+||++|+.+++.|.+|+|+||. ...||..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~-~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERA-AGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC-CCCCCcc
Confidence 4689999999999999999999999999999997 7777753
No 167
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.17 E-value=2.9e-06 Score=77.84 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=32.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
..||+|||||+.|+++|+.|+++|++|+|+|++ +..
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~-d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERH-DIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECC-CCC
Confidence 579999999999999999999999999999996 443
No 168
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.16 E-value=3.5e-06 Score=73.84 Aligned_cols=36 Identities=36% Similarity=0.488 Sum_probs=32.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHc-CC-eEEEEecC
Q 041557 60 ISSNPHVKIIGGGMAVLACALRLDKR-GV-KSNVFDMG 95 (189)
Q Consensus 60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~-g~-~v~v~e~~ 95 (189)
....+||+|||||++|+++|+.|+++ |+ +|+|+|+.
T Consensus 27 ~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~ 64 (407)
T TIGR01373 27 PKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG 64 (407)
T ss_pred CCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 34578999999999999999999995 95 89999996
No 169
>PLN02507 glutathione reductase
Probab=98.15 E-value=3.3e-06 Score=76.68 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=38.1
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC--------CCCCCcCc
Q 041557 59 PISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG--------NPDLEGRM 103 (189)
Q Consensus 59 ~~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~--------~~~~gg~~ 103 (189)
|...++|++|||+|++|+.+|..++++|.+|+|+|+. ...+||.+
T Consensus 21 ~~~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc 73 (499)
T PLN02507 21 ATHYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTC 73 (499)
T ss_pred ccccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCcccee
Confidence 3345789999999999999999999999999999961 14688875
No 170
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.14 E-value=2.6e-06 Score=75.76 Aligned_cols=32 Identities=34% Similarity=0.400 Sum_probs=30.1
Q ss_pred CCEEEECCCHHHHHHHHHHHH----cCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDK----RGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~----~g~~v~v~e~~ 95 (189)
+||+||||||+||++|+.|++ +|++|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 479999999999999999998 89999999994
No 171
>PRK13748 putative mercuric reductase; Provisional
Probab=98.13 E-value=3.1e-06 Score=77.38 Aligned_cols=41 Identities=29% Similarity=0.507 Sum_probs=37.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
..+||+|||||++|+++|..|++.|.+|+|+|++ .+||.+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~--~~GG~c~ 137 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG--TIGGTCV 137 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC--cceeecc
Confidence 3589999999999999999999999999999984 7898763
No 172
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.13 E-value=4.5e-06 Score=72.21 Aligned_cols=43 Identities=37% Similarity=0.413 Sum_probs=38.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
+...++|+|||+|++|+.+|..|++.|++|+|||+. +.+||.+
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~~gg~~ 57 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKL-PEPGGLM 57 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCC-CCCCcee
Confidence 334678999999999999999999999999999997 8888764
No 173
>PRK14727 putative mercuric reductase; Provisional
Probab=98.12 E-value=3.5e-06 Score=75.95 Aligned_cols=42 Identities=26% Similarity=0.417 Sum_probs=38.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
..+|++|||+|++|+.+|..|+++|.+|+|+|++ ..+||.|.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~-~~~GG~c~ 56 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGA-DVIGGCCV 56 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CcceeEec
Confidence 4579999999999999999999999999999996 78999874
No 174
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.11 E-value=3.6e-06 Score=75.42 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=31.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~ 95 (189)
...||+|||||++|+++|+.|+++ |.+|+|+|++
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~ 58 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD 58 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 357999999999999999999998 8999999985
No 175
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.10 E-value=4.3e-06 Score=77.12 Aligned_cols=40 Identities=28% Similarity=0.403 Sum_probs=36.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
...||+|||+|++||++|+.++++|.+|+|+||. ...||.
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~-~~~gG~ 47 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKE-PVFGGT 47 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecC-CCCCCc
Confidence 3679999999999999999999999999999997 777775
No 176
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.10 E-value=4.6e-06 Score=75.04 Aligned_cols=41 Identities=29% Similarity=0.485 Sum_probs=35.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEec-----CCCCCCcCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDM-----GNPDLEGRM 103 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~-----~~~~~gg~~ 103 (189)
.+|++|||+|++|+++|..|++.|.+|+|+|+ +...+||.+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c 49 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTC 49 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcc
Confidence 57999999999999999999999999999998 114667765
No 177
>PLN02985 squalene monooxygenase
Probab=98.10 E-value=4.5e-06 Score=76.11 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=32.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
....||+|||||++|+++|..|+++|++|+|+|+.
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~ 75 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERD 75 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence 35679999999999999999999999999999986
No 178
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.10 E-value=4.6e-06 Score=73.33 Aligned_cols=38 Identities=39% Similarity=0.703 Sum_probs=33.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
..+|+|||||++||++|..|+++|++|+|||+. ..+-+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~-e~~R~ 39 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESR-EDPRG 39 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeec-ccccc
Confidence 357999999999999999999999999999985 55433
No 179
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.09 E-value=1.3e-05 Score=71.15 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=54.5
Q ss_pred CEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCC-chhHHHHHHHhhhhh
Q 041557 65 HVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVND-SRFGELVDVCWKVVL 141 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~l~~~~~~~~ 141 (189)
+|+|||||++|+++|..|++.+ .+|+|||++ +..+-. .. +..++.... ......+.. .
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~-~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~-~---- 62 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKT-DIVSFG------AC-------GLPYFVGGFFDDPNTMIAR-T---- 62 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECC-Ccceee------cC-------CCceEeccccCCHHHhhcC-C----
Confidence 6999999999999999999886 589999997 544311 00 001111000 000011100 0
Q ss_pred hcCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557 142 LLGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE 181 (189)
Q Consensus 142 ~~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~ 181 (189)
.+.+.. .+++++++++|++|+.+++.+++..
T Consensus 63 -------~~~~~~--~gv~~~~~~~V~~id~~~~~v~~~~ 93 (444)
T PRK09564 63 -------PEEFIK--SGIDVKTEHEVVKVDAKNKTITVKN 93 (444)
T ss_pred -------HHHHHH--CCCeEEecCEEEEEECCCCEEEEEE
Confidence 111211 3789999999999988877777764
No 180
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.09 E-value=4e-06 Score=78.49 Aligned_cols=35 Identities=31% Similarity=0.519 Sum_probs=32.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+..+|+|||||++||++|+.|+++|++|+|||+.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~ 113 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKD 113 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecc
Confidence 35678999999999999999999999999999996
No 181
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.09 E-value=4.6e-06 Score=65.51 Aligned_cols=31 Identities=42% Similarity=0.605 Sum_probs=29.6
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
||+|||||++|+.+|..|++.+++|+|+|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecc
Confidence 6999999999999999999999999999885
No 182
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.09 E-value=4.5e-06 Score=75.76 Aligned_cols=41 Identities=29% Similarity=0.390 Sum_probs=35.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCC----C---CCCcCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGN----P---DLEGRM 103 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~----~---~~gg~~ 103 (189)
.+||+|||||++|+.+|..|+++|++|+|+|+.. . .+||.+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C 52 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTC 52 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCcccccccccee
Confidence 4799999999999999999999999999999630 1 378874
No 183
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.07 E-value=5.9e-06 Score=75.74 Aligned_cols=41 Identities=27% Similarity=0.461 Sum_probs=36.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC--CCCcCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNP--DLEGRM 103 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~--~~gg~~ 103 (189)
...||+|||+|.+||++|..+++.|.+|+|+||. + ..||..
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~-~~~~~GG~s 45 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQE-NEANLGGQA 45 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC-CCCCCCCce
Confidence 3579999999999999999999999999999997 6 567753
No 184
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.07 E-value=5.6e-05 Score=65.84 Aligned_cols=86 Identities=14% Similarity=0.156 Sum_probs=60.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++|+|||+|+.|+-+|..|++.|.+|+++++. +.+..+. + ++.....+.
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~-~~~l~~~-----------~----------~~~~~~~l~-------- 190 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNA-ASLLASL-----------M----------PPEVSSRLQ-------- 190 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecC-Ccccchh-----------C----------CHHHHHHHH--------
Confidence 467999999999999999999999999999986 4322110 0 111111111
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW 187 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~ 187 (189)
+.+.. .|++++++++|++++.+++.|.|.+.++..+
T Consensus 191 -------~~l~~--~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i 226 (377)
T PRK04965 191 -------HRLTE--MGVHLLLKSQLQGLEKTDSGIRATLDSGRSI 226 (377)
T ss_pred -------HHHHh--CCCEEEECCeEEEEEccCCEEEEEEcCCcEE
Confidence 12221 3899999999999998777888887766544
No 185
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.07 E-value=5e-06 Score=75.68 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=35.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
...||+|||+| +||++|+++++.|.+|+|+||. ...||.
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~-~~~Gg~ 44 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEAT-DKFGGT 44 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecC-CCCCcc
Confidence 36799999999 9999999999999999999997 776664
No 186
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.07 E-value=4.7e-06 Score=75.45 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=31.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCC
Q 041557 64 PHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPD 98 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~ 98 (189)
.||+|||||++|+++|+.|++. |.+|+|+|+. ..
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~-~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERL-DA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcC-Cc
Confidence 4799999999999999999997 9999999996 44
No 187
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.05 E-value=6.1e-06 Score=73.58 Aligned_cols=35 Identities=37% Similarity=0.602 Sum_probs=31.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
.+|+|||||++|+.+|+.|+++|++|+|||+. +..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~r-p~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMR-PVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-Ccc
Confidence 58999999999999999999999999999985 443
No 188
>PTZ00058 glutathione reductase; Provisional
Probab=98.05 E-value=7.2e-06 Score=75.59 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=36.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
..+||+|||+|++|+.+|..+++.|.+|+|+|++ .+||.+
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~--~~GGtC 86 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD--YLGGTC 86 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc--cccccc
Confidence 5689999999999999999999999999999984 789875
No 189
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.02 E-value=7e-05 Score=65.77 Aligned_cols=85 Identities=16% Similarity=0.132 Sum_probs=58.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++|+|||+|..|+-+|..|++.|.+|+|+|+. +.+.++. + ++.+.+.+..
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~~l~~~-----------~----------~~~~~~~l~~------- 194 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELA-ATVMGRN-----------A----------PPPVQRYLLQ------- 194 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC-Ccchhhh-----------c----------CHHHHHHHHH-------
Confidence 468999999999999999999999999999986 4432221 0 1112221111
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW 187 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~ 187 (189)
.+.. .|++++++++|++++. ++.+.+.+.+++.+
T Consensus 195 --------~l~~--~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i 228 (396)
T PRK09754 195 --------RHQQ--AGVRILLNNAIEHVVD-GEKVELTLQSGETL 228 (396)
T ss_pred --------HHHH--CCCEEEeCCeeEEEEc-CCEEEEEECCCCEE
Confidence 1111 3899999999999976 55566666665543
No 190
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.01 E-value=8.7e-05 Score=66.27 Aligned_cols=84 Identities=14% Similarity=0.066 Sum_probs=59.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++++|||+|..|+.+|..|++.|.+|+|+++. +.+... + ++++...+..
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~-~~~l~~------------~----------d~~~~~~l~~------- 224 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTR-DRLLSF------------L----------DDEISDALSY------- 224 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC-CCcCCc------------C----------CHHHHHHHHH-------
Confidence 468999999999999999999999999999986 432110 1 2223222222
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA 186 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~ 186 (189)
.+.. .|++++++++|+.++..++++.+.+.++..
T Consensus 225 --------~l~~--~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~ 258 (461)
T PRK05249 225 --------HLRD--SGVTIRHNEEVEKVEGGDDGVIVHLKSGKK 258 (461)
T ss_pred --------HHHH--cCCEEEECCEEEEEEEeCCeEEEEECCCCE
Confidence 1211 389999999999999877778777655443
No 191
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.01 E-value=7.9e-06 Score=76.31 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=31.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~ 95 (189)
...+|+||||||+||++|..|++. |++|+|||+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~ 65 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERK 65 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcC
Confidence 467899999999999999999995 9999999986
No 192
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.00 E-value=8.7e-06 Score=75.38 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=33.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
..||+|||+|.+||+||+.+++.|.+|+|+||. ...+|
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~-~~~~g 40 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV-PVKRS 40 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEcc-CCCCC
Confidence 458999999999999999999999999999997 55444
No 193
>PTZ00367 squalene epoxidase; Provisional
Probab=98.00 E-value=7.7e-06 Score=75.49 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=32.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...||+|||||++|+++|+.|+++|++|+|+|+.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~ 65 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERD 65 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccc
Confidence 4678999999999999999999999999999986
No 194
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.00 E-value=8.2e-06 Score=74.98 Aligned_cols=36 Identities=28% Similarity=0.378 Sum_probs=32.7
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
||+|||+|++||+||+.+++.|.+|+|+||. ...+|
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~-~~~~g 36 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKV-YPTRS 36 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEecc-CCCCC
Confidence 6999999999999999999999999999997 65554
No 195
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.99 E-value=8.8e-06 Score=75.29 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=36.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
...||+|||+|.+||++|+.+++.|.+|+|+||. ...||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~-~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKS-AHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcC-CCCCch
Confidence 4679999999999999999999999999999997 777764
No 196
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.99 E-value=8.9e-06 Score=74.56 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=35.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
...||+|||+|.+||+||+.+++.|.+|+|+||. ...+|
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~-~~~~g 53 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKA-ALDDG 53 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEcc-CCCCC
Confidence 4689999999999999999999999999999997 66554
No 197
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.99 E-value=9.3e-06 Score=75.30 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=34.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
..+||+|||||+||+.||+.+++.|.+|+|+|+..+.+|+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence 3589999999999999999999999999999986235554
No 198
>PRK12839 hypothetical protein; Provisional
Probab=97.98 E-value=1.3e-05 Score=74.02 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=37.8
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
....||+|||+|.+||++|+.|+++|.+|+|+|+. ..+||..
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~-~~~gg~~ 47 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKA-STCGGAT 47 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCccc
Confidence 34689999999999999999999999999999997 7888763
No 199
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.97 E-value=4.9e-05 Score=66.74 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=30.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~ 95 (189)
.++|+|||||++|+.+|..|+++|+ +|+|++++
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e 37 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDE 37 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCC
Confidence 4679999999999999999999987 69999986
No 200
>PRK07846 mycothione reductase; Reviewed
Probab=97.96 E-value=0.00011 Score=65.89 Aligned_cols=84 Identities=17% Similarity=0.116 Sum_probs=58.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++++|||+|+.|+-+|..|++.|.+|+|+++. +.+.. ..++++.+.+..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~ll~----------------------~~d~~~~~~l~~------- 215 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRS-GRLLR----------------------HLDDDISERFTE------- 215 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC-Ccccc----------------------ccCHHHHHHHHH-------
Confidence 368999999999999999999999999999986 43210 012223222222
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW 187 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~ 187 (189)
.+. .+++++++++|++++..+++..+.+.++..+
T Consensus 216 --------l~~---~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i 249 (451)
T PRK07846 216 --------LAS---KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTV 249 (451)
T ss_pred --------HHh---cCeEEEeCCEEEEEEEcCCEEEEEECCCcEe
Confidence 111 2789999999999987766666766555443
No 201
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.95 E-value=0.0001 Score=65.88 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=57.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++++|||+|+.|+-+|..|++.|.+|+++++. +.+... + ++.+.+.+..
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~-~~~l~~------------~----------~~~~~~~l~~------- 221 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEAL-PRILPG------------E----------DKEISKLAER------- 221 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC-CCcCCc------------C----------CHHHHHHHHH-------
Confidence 368999999999999999999999999999986 432110 1 1223222222
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeC
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGEN 182 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~ 182 (189)
.+.. .|++++++++|++++.+++.+.+.+.
T Consensus 222 --------~l~~--~gV~i~~~~~V~~i~~~~~~v~v~~~ 251 (462)
T PRK06416 222 --------ALKK--RGIKIKTGAKAKKVEQTDDGVTVTLE 251 (462)
T ss_pred --------HHHH--cCCEEEeCCEEEEEEEeCCEEEEEEE
Confidence 1211 38999999999999987777777543
No 202
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.95 E-value=6.6e-05 Score=64.79 Aligned_cols=75 Identities=19% Similarity=0.179 Sum_probs=56.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++++|||+|+.||.+|..|+++|++|+++|.. +.+++++.. +.+.+.+....
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~-~~~~~~~~~---------------------~~~~~~~~~~l----- 188 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAA-DRLGGQLLD---------------------PEVAEELAELL----- 188 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcc-cccchhhhh---------------------HHHHHHHHHHH-----
Confidence 578999999999999999999999999999997 777766421 12222222211
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM 176 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~ 176 (189)
.. .|+++++++++..++...+.
T Consensus 189 ----------~~--~gi~~~~~~~~~~i~~~~~~ 210 (415)
T COG0446 189 ----------EK--YGVELLLGTKVVGVEGKGNT 210 (415)
T ss_pred ----------HH--CCcEEEeCCceEEEEcccCc
Confidence 11 27899999999999876554
No 203
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.95 E-value=1.1e-05 Score=72.11 Aligned_cols=35 Identities=34% Similarity=0.589 Sum_probs=31.7
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE 100 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g 100 (189)
+|+|||||++|+.+|+.|+++|++|+|||+. +..+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~r-p~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMR-PEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecc-cccc
Confidence 6999999999999999999999999999985 5543
No 204
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.94 E-value=1e-05 Score=73.43 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=32.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDL 99 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~ 99 (189)
...||+|||||+.|+++|+.|++. |++|+|+||. ..+
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~-~~~ 42 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERL-DGV 42 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcC-Cch
Confidence 457999999999999999999985 7899999996 544
No 205
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.94 E-value=1.2e-05 Score=74.00 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=35.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
...||+|||+|.+||+||..+++.|.+|+|+||. ...+|.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~-~~~~g~ 43 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKV-FPTRSH 43 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEcc-CCCCCc
Confidence 3579999999999999999999999999999997 555543
No 206
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.94 E-value=1.3e-05 Score=73.74 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=35.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
..||+|||+|.+||++|+.|++.|.+|+|+|+. ...||.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~-~~~gG~ 44 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ-DKVGGS 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCce
Confidence 678999999999999999999999999999997 677775
No 207
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.93 E-value=4.8e-05 Score=67.82 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=29.6
Q ss_pred CEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCC
Q 041557 65 HVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPD 98 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~ 98 (189)
+|+|||||++|+.+|..|++. +++|+|+|++ +.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~-~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKD-RD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECC-CC
Confidence 699999999999999999887 5789999997 44
No 208
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.93 E-value=1.4e-05 Score=73.60 Aligned_cols=40 Identities=28% Similarity=0.488 Sum_probs=36.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
...||+|||+|++|+++|..++++|.+|+|+|+. ..+||.
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~-~~~gG~ 45 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKA-PHYGGS 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCC-CCCCcc
Confidence 3679999999999999999999999999999997 777763
No 209
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.93 E-value=2e-05 Score=73.65 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=33.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE 100 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g 100 (189)
...||+|||+|.+||+||..+++.|.+|+|+|+. ..++
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~-~~~~ 71 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQ-DSPR 71 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecC-CCCC
Confidence 3579999999999999999999999999999985 5554
No 210
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.92 E-value=1.3e-05 Score=74.75 Aligned_cols=38 Identities=26% Similarity=0.263 Sum_probs=34.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
..||+|||+|.|||+||..+++.|.+|+|+||. ...+|
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~-~~~~g 45 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKS-LFGKA 45 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEecc-CCCCC
Confidence 578999999999999999999999999999997 55443
No 211
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.92 E-value=0.00013 Score=65.08 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=57.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++|+|||+|.+|+.+|..|++.|.+|+|+|+. +.+... + ++.+.+.+.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~-~~~l~~------------~----------~~~~~~~~~-------- 218 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEML-DRILPG------------E----------DAEVSKVVA-------- 218 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-CCCCCC------------C----------CHHHHHHHH--------
Confidence 368999999999999999999999999999986 432110 1 112222211
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK 184 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~ 184 (189)
+.+.. .|++++++++|++++..++++.+.+.++
T Consensus 219 -------~~l~~--~gi~i~~~~~v~~i~~~~~~v~v~~~~g 251 (461)
T TIGR01350 219 -------KALKK--KGVKILTNTKVTAVEKNDDQVVYENKGG 251 (461)
T ss_pred -------HHHHH--cCCEEEeCCEEEEEEEeCCEEEEEEeCC
Confidence 12221 3799999999999988777777765443
No 212
>PLN02546 glutathione reductase
Probab=97.92 E-value=1.5e-05 Score=73.39 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=31.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM 94 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~ 94 (189)
..++||+|||+|++|+.+|..|+++|.+|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3468999999999999999999999999999996
No 213
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.92 E-value=0.00012 Score=64.97 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=56.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++|+|||+|++|+.+|..|++.|.+|+|+++. +.+..+ .++.+.+.+..
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~-~~~l~~----------------------~~~~~~~~~~~------- 206 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAA-STILPR----------------------EEPSVAALAKQ------- 206 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC-CccCCC----------------------CCHHHHHHHHH-------
Confidence 357999999999999999999999999999986 443211 01122222221
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCC
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG 183 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~ 183 (189)
.+.. .|++++++++|+.++.+++.+.+..++
T Consensus 207 --------~l~~--~GI~i~~~~~V~~i~~~~~~v~v~~~g 237 (438)
T PRK07251 207 --------YMEE--DGITFLLNAHTTEVKNDGDQVLVVTED 237 (438)
T ss_pred --------HHHH--cCCEEEcCCEEEEEEecCCEEEEEECC
Confidence 1211 389999999999998766666665443
No 214
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.92 E-value=1.5e-05 Score=73.83 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=34.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
...||+|||+|.+||+||..+++.|.+|+|+||. ...+|
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~-~~~~g 49 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKV-FPTRS 49 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEecc-CCCCC
Confidence 3579999999999999999999999999999996 55444
No 215
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.92 E-value=1.4e-05 Score=74.46 Aligned_cols=40 Identities=23% Similarity=0.186 Sum_probs=35.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
...||+|||+|.+||+||+.+++.|.+|+|+||. ...+|.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~-~~~~g~ 67 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKL-FPTRSH 67 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecc-CCCCCC
Confidence 4679999999999999999999999999999997 555553
No 216
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.90 E-value=1.6e-05 Score=73.73 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=34.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
..||+|||+|.|||+||+.+++.|.+|+|+||. ...+|
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~-~~~~g 44 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKV-FPTRS 44 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEcc-CCCCC
Confidence 578999999999999999999999999999997 55554
No 217
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.90 E-value=1.5e-05 Score=73.90 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=34.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
...||+|||+|.+||+||+.+++.|.+|+|+||. ...+|
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~-~~~~g 49 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKV-FPTRS 49 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEcc-CCCCc
Confidence 3579999999999999999999999999999996 55444
No 218
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.90 E-value=1.6e-05 Score=74.37 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=34.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
...||+|||+|.+||+||+.+++.|.+|+|+||. ...+|
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~-~~~~g 87 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL-FPTRS 87 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcC-CCCCC
Confidence 3579999999999999999999999999999997 55554
No 219
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.89 E-value=1.7e-05 Score=71.12 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=33.5
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
+|+|||+|++|+++|..|++.|.+|+|+|++ ..||.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~--~~GG~c 38 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA--DLGGTC 38 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC--cccccC
Confidence 6999999999999999999999999999985 577753
No 220
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.89 E-value=0.00016 Score=64.87 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=57.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++++|||+|+.|+-+|..|++.|.+|+|+++. +.+... + ++++...+..
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~-~~ll~~------------~----------d~~~~~~l~~------- 218 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRS-TKLLRH------------L----------DEDISDRFTE------- 218 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-Cccccc------------c----------CHHHHHHHHH-------
Confidence 368999999999999999999999999999986 332110 1 1122222211
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA 186 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~ 186 (189)
.+. .+++++++++|++++.+++++.+.+.++..
T Consensus 219 --------~~~---~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~ 251 (452)
T TIGR03452 219 --------IAK---KKWDIRLGRNVTAVEQDGDGVTLTLDDGST 251 (452)
T ss_pred --------HHh---cCCEEEeCCEEEEEEEcCCeEEEEEcCCCE
Confidence 111 278999999999998777777776655433
No 221
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.89 E-value=1.1e-05 Score=67.61 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=28.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~ 95 (189)
+|++|||+|.+|+.+|.+|++.| ++|+|+|++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG 33 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAG 33 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcc
Confidence 48999999999999999999997 799999997
No 222
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.87 E-value=1.9e-05 Score=72.89 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=33.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEG 101 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg 101 (189)
..||+|||+|++||+||+.+++.| .+|+|+||. ...||
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~-~~~gg 42 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKT-HPIRS 42 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEecc-CCCch
Confidence 468999999999999999999874 899999997 55454
No 223
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.86 E-value=2.1e-05 Score=72.22 Aligned_cols=38 Identities=21% Similarity=0.111 Sum_probs=34.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
+||+|||+|++|+++|+.|+++|++|+|+|++ ...||.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~-~~~~~~ 38 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIG-AADSFL 38 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEecc-CccCCC
Confidence 48999999999999999999999999999997 666654
No 224
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.86 E-value=0.00024 Score=63.92 Aligned_cols=83 Identities=13% Similarity=0.130 Sum_probs=58.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhc
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLL 143 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (189)
++++|||+|..|+-+|..|++.|.+|+++++. +.+... + ++.+...+..
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~-~~~l~~------------~----------d~~~~~~l~~-------- 226 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSR-DRVLPG------------E----------DADAAEVLEE-------- 226 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC-CcCCCC------------C----------CHHHHHHHHH--------
Confidence 57999999999999999999999999999986 332211 0 1112222221
Q ss_pred CchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557 144 GYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA 186 (189)
Q Consensus 144 ~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~ 186 (189)
.|.. .|++++++++|++++..++++.+.+.++..
T Consensus 227 -------~L~~--~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~ 260 (466)
T PRK07845 227 -------VFAR--RGMTVLKRSRAESVERTGDGVVVTLTDGRT 260 (466)
T ss_pred -------HHHH--CCcEEEcCCEEEEEEEeCCEEEEEECCCcE
Confidence 1211 389999999999998777777776655443
No 225
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.85 E-value=2.6e-05 Score=72.08 Aligned_cols=41 Identities=29% Similarity=0.385 Sum_probs=37.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
....||+|||+|++|+++|+.++++|++|+|+|+. ...||.
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~-~~~gg~ 50 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKD-PVFGGT 50 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecC-CCCCcc
Confidence 34789999999999999999999999999999997 777775
No 226
>PRK06116 glutathione reductase; Validated
Probab=97.85 E-value=0.00019 Score=64.01 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=58.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++|+|||+|..|+-+|..|++.|.+|+++++. +.+... + ++.+.+.+..
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~~l~~------------~----------~~~~~~~l~~------- 216 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRG-DAPLRG------------F----------DPDIRETLVE------- 216 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC-CCCccc------------c----------CHHHHHHHHH-------
Confidence 468999999999999999999999999999986 332100 1 1122222111
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe-EEEEeCCeeee
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM-WYLGENGKTAW 187 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~-w~l~~~~~~~~ 187 (189)
.+.. .|++++++++|++++.++++ +.|.+.++..+
T Consensus 217 --------~L~~--~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i 252 (450)
T PRK06116 217 --------EMEK--KGIRLHTNAVPKAVEKNADGSLTLTLEDGETL 252 (450)
T ss_pred --------HHHH--CCcEEECCCEEEEEEEcCCceEEEEEcCCcEE
Confidence 1211 38999999999999876554 77776555443
No 227
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.85 E-value=2e-05 Score=72.74 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=34.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcC---CeEEEEecCCCCCCcC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRG---VKSNVFDMGNPDLEGR 102 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g---~~v~v~e~~~~~~gg~ 102 (189)
..||+|||+|.+||+||..+++.| .+|+|+||. ...+|.
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~-~~~~~~ 46 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKT-QPMRSH 46 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcc-cCCCCC
Confidence 468999999999999999999998 899999997 655553
No 228
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.85 E-value=2.4e-05 Score=71.13 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=31.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~ 95 (189)
...||+|||||+.|+++|+.|++.+ .+|+|+|+.
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~ 79 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERR 79 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecC
Confidence 4689999999999999999999964 699999996
No 229
>PLN02507 glutathione reductase
Probab=97.85 E-value=0.00025 Score=64.50 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=59.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++|+|||+|..|+-+|..|++.|.+|+|+++. +.+-. ..++++.+.+..
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~-~~~l~----------------------~~d~~~~~~l~~------- 252 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRK-ELPLR----------------------GFDDEMRAVVAR------- 252 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEec-CCcCc----------------------ccCHHHHHHHHH-------
Confidence 368999999999999999999999999999986 32110 012223332222
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeeee
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTAW 187 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~~ 187 (189)
.|.. .|++++++++|++++..+++..+.+.++..+
T Consensus 253 --------~l~~--~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i 287 (499)
T PLN02507 253 --------NLEG--RGINLHPRTNLTQLTKTEGGIKVITDHGEEF 287 (499)
T ss_pred --------HHHh--CCCEEEeCCEEEEEEEeCCeEEEEECCCcEE
Confidence 1211 3899999999999987777777776555433
No 230
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.85 E-value=2.4e-05 Score=70.38 Aligned_cols=41 Identities=29% Similarity=0.438 Sum_probs=37.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
..+|++|||+|++|..+|..+++.|.+|.++|+. ...||.+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~-~~lGGtC 43 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKG-ERLGGTC 43 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeec-CCcCceE
Confidence 4689999999999999999999999999999996 6899974
No 231
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.84 E-value=2e-05 Score=70.95 Aligned_cols=32 Identities=38% Similarity=0.668 Sum_probs=30.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.||+|||+|++||++|..+++.|.+|+|+||.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~ 33 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPG 33 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 58999999999999999999999999999996
No 232
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.84 E-value=2.1e-05 Score=73.76 Aligned_cols=38 Identities=26% Similarity=0.453 Sum_probs=33.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
..||+|||+|.+||+||..+++.|.+|+|+|+. +..+|
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~-~~~~s 42 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLV-PAKRS 42 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCC-CCCCc
Confidence 578999999999999999999999999999996 55443
No 233
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.84 E-value=2.6e-05 Score=70.73 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=35.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecC-------CCCCCcCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMG-------NPDLEGRM 103 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~-------~~~~gg~~ 103 (189)
..+||+|||+|++|..+|..++++ |.+|+|+|+. ...+||.+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtC 51 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTC 51 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCee
Confidence 468999999999999999999997 9999999972 03578864
No 234
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.83 E-value=2.5e-05 Score=70.66 Aligned_cols=38 Identities=37% Similarity=0.490 Sum_probs=33.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
..||+|||+|++||++|+.+++.|. |+|+||. +..+|.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~-~~~~g~ 39 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKA-PVTEGN 39 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEcc-CCCCCc
Confidence 3689999999999999999999997 9999997 665554
No 235
>PLN02815 L-aspartate oxidase
Probab=97.82 E-value=2.5e-05 Score=72.51 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=34.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
...||+|||+|.+||++|+.+++.| +|+|+||. ...||.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~-~~~gg~ 66 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKD-EPHESN 66 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECC-CCCCCc
Confidence 4579999999999999999999999 99999997 666653
No 236
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.81 E-value=3.1e-05 Score=71.43 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=37.0
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
....||+|||+| +|+++|..+++.|.+|+|+||. +.+||..
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~-~~~GG~~ 54 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKS-SYVGGST 54 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecC-CCCcCcc
Confidence 347899999999 8999999999999999999997 8888853
No 237
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.81 E-value=2.4e-05 Score=69.77 Aligned_cols=38 Identities=32% Similarity=0.343 Sum_probs=33.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
..||+|||+|.+||+||..++ .|.+|+|+||. ...+|.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~-~~~gg~ 41 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKG-KLNECN 41 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecC-CCCCCc
Confidence 579999999999999999975 79999999997 666664
No 238
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.81 E-value=3.1e-05 Score=70.47 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=33.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLE 100 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~g 100 (189)
...||+|||||++|+++|+.|++. +.+|+|+|+. +.+|
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~-~~~a 44 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERL-DSPA 44 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcC-CCcc
Confidence 456999999999999999999999 8999999994 4443
No 239
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.80 E-value=0.00028 Score=63.13 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=55.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhc
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLL 143 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (189)
++++|||+|..|+.+|..|++.|.+|+|+++. +.+... + ++++...+..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~-~~~l~~------------~----------d~~~~~~l~~-------- 215 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRS-DRLLPR------------E----------EPEISAAVEE-------- 215 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-CcCCCc------------c----------CHHHHHHHHH--------
Confidence 68999999999999999999999999999986 432211 1 2223222222
Q ss_pred CchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557 144 GYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE 181 (189)
Q Consensus 144 ~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~ 181 (189)
.+.. .|++++++++|+.++.+++.+.+.+
T Consensus 216 -------~l~~--~gV~i~~~~~V~~i~~~~~~~~v~~ 244 (463)
T TIGR02053 216 -------ALAE--EGIEVVTSAQVKAVSVRGGGKIITV 244 (463)
T ss_pred -------HHHH--cCCEEEcCcEEEEEEEcCCEEEEEE
Confidence 1111 3899999999999987766665543
No 240
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.80 E-value=2.4e-05 Score=74.50 Aligned_cols=33 Identities=27% Similarity=0.285 Sum_probs=30.6
Q ss_pred CEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCC
Q 041557 65 HVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPD 98 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~ 98 (189)
+|+|||||++||++|+.|+++ |++|+|||+. +.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~-~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERN-RP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecC-CC
Confidence 699999999999999999998 8999999996 54
No 241
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.80 E-value=0.00028 Score=63.04 Aligned_cols=83 Identities=13% Similarity=0.104 Sum_probs=57.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++++|||+|..|+-+|..|++.|.+|+|+++. +.+... + ++++...+..
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~-~~~l~~------------~----------d~~~~~~l~~------- 215 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRG-ELILRG------------F----------DDDMRALLAR------- 215 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeC-CCCCcc------------c----------CHHHHHHHHH-------
Confidence 467999999999999999999999999999986 332100 1 1222222211
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCee
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKT 185 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~ 185 (189)
.+.. .|++++++++|++++..++++.+.+.++.
T Consensus 216 --------~l~~--~gV~i~~~~~v~~i~~~~~~~~v~~~~g~ 248 (446)
T TIGR01424 216 --------NMEG--RGIRIHPQTSLTSITKTDDGLKVTLSHGE 248 (446)
T ss_pred --------HHHH--CCCEEEeCCEEEEEEEcCCeEEEEEcCCc
Confidence 1211 38999999999999876666777665443
No 242
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.80 E-value=2.8e-05 Score=71.56 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=33.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
...||+|||+|.|||+||+.++ .|.+|+|+||. ...||.
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~-~~~gg~ 46 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKD-TLKTSA 46 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEcc-CCCCCc
Confidence 4679999999999999999986 49999999997 666664
No 243
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.80 E-value=3e-05 Score=72.74 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=36.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
.+||+|||+|++|..+|..++++|.+|+|+|++...+||.+
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtC 156 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTC 156 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccce
Confidence 67999999999999999999999999999997424688863
No 244
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.79 E-value=3e-05 Score=77.00 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=37.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
...||+|||+|.+||+||..+++.|.+|+|+||. ...||..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~-~~~GG~s 448 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKE-AKLGGNS 448 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEcc-CCCCCch
Confidence 3589999999999999999999999999999997 8888863
No 245
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.79 E-value=2.8e-05 Score=72.33 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=32.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPD 98 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~ 98 (189)
..||+|||+|.|||+||+.+++. |.+|+|+||. ..
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~-~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKA-NI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECC-Cc
Confidence 47899999999999999999998 9999999997 44
No 246
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.77 E-value=3.8e-05 Score=69.06 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=35.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
++|+|||+|++|+.+|..|+++|.+|+|+|+. ..||.+.
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~--~~gG~c~ 40 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD--GLGGAAV 40 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc--CCCCccc
Confidence 47999999999999999999999999999985 5788764
No 247
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.76 E-value=0.00036 Score=62.52 Aligned_cols=81 Identities=17% Similarity=0.252 Sum_probs=56.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++++|||+|++|+.+|..|.+.|.+|+|+++. +.+.. ..++++.+.+.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~-~~ll~----------------------~~d~e~~~~l~~------- 219 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMA-PQLLP----------------------GEDEDIAHILRE------- 219 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecC-CCcCc----------------------cccHHHHHHHHH-------
Confidence 358999999999999999999999999999986 43210 011223222222
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCC
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG 183 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~ 183 (189)
.|.. .|++++++++|+.++..++.+.+...+
T Consensus 220 --------~L~~--~GI~i~~~~~V~~i~~~~~~v~~~~~g 250 (458)
T PRK06912 220 --------KLEN--DGVKIFTGAALKGLNSYKKQALFEYEG 250 (458)
T ss_pred --------HHHH--CCCEEEECCEEEEEEEcCCEEEEEECC
Confidence 1221 389999999999998766666665433
No 248
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.76 E-value=3.7e-05 Score=70.06 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=33.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
..||+|||+|.|||+||..+++ |.+|+|+||. ...+|.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~-~~~~g~ 40 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKK-TKRNSN 40 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEecc-CCCCCC
Confidence 5699999999999999999976 8999999997 665554
No 249
>PRK08275 putative oxidoreductase; Provisional
Probab=97.76 E-value=3.6e-05 Score=70.69 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=32.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPD 98 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~ 98 (189)
...||+|||+|.+||+||+.+++. |.+|+|+||. ..
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~-~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKA-NV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCC-CC
Confidence 357999999999999999999987 6899999997 54
No 250
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.75 E-value=4.2e-05 Score=69.25 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=30.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDM 94 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~ 94 (189)
.+|++|||+|++|+.+|..+++.|.+|+|+|+
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~ 33 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDF 33 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 47999999999999999999999999999997
No 251
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.75 E-value=0.00044 Score=61.94 Aligned_cols=82 Identities=17% Similarity=0.087 Sum_probs=55.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++++|||+|..|+-+|..|++.|.+|+|+++. +.+... + ++.+.+.+..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~-~~il~~------------~----------d~~~~~~~~~------- 215 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRH-ERVLRS------------F----------DSMISETITE------- 215 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC-CCCCcc------------c----------CHHHHHHHHH-------
Confidence 368999999999999999999999999999986 332111 1 1122222211
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCe-EEEEeCCe
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGM-WYLGENGK 184 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~-w~l~~~~~ 184 (189)
.|.. .|++++++++|+.++.++++ ..+.+.++
T Consensus 216 --------~l~~--~gI~i~~~~~v~~i~~~~~~~~~v~~~~g 248 (450)
T TIGR01421 216 --------EYEK--EGINVHKLSKPVKVEKTVEGKLVIHFEDG 248 (450)
T ss_pred --------HHHH--cCCEEEcCCEEEEEEEeCCceEEEEECCC
Confidence 1211 38999999999999875443 55555444
No 252
>PRK06370 mercuric reductase; Validated
Probab=97.74 E-value=0.00046 Score=61.86 Aligned_cols=77 Identities=23% Similarity=0.236 Sum_probs=54.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++|+|||+|+.|+-+|..|++.|.+|+|+++. +.+... .++.+.+.+..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~-~~~l~~----------------------~~~~~~~~l~~------- 220 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERG-PRLLPR----------------------EDEDVAAAVRE------- 220 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcC-CCCCcc----------------------cCHHHHHHHHH-------
Confidence 368999999999999999999999999999986 443211 01122222221
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEE
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYL 179 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l 179 (189)
.+.. .|++++++++|+.++..+++..+
T Consensus 221 --------~l~~--~GV~i~~~~~V~~i~~~~~~~~v 247 (463)
T PRK06370 221 --------ILER--EGIDVRLNAECIRVERDGDGIAV 247 (463)
T ss_pred --------HHHh--CCCEEEeCCEEEEEEEcCCEEEE
Confidence 1111 38999999999999877665544
No 253
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.74 E-value=3.9e-05 Score=70.31 Aligned_cols=39 Identities=28% Similarity=0.266 Sum_probs=33.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC-CCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD-LEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~-~gg~ 102 (189)
...||+|||+|.|||+||..+ +.|.+|+|+||. .. .||.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~-~~~~gG~ 45 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKG-LFGKSGC 45 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEcc-CCCCCcc
Confidence 357999999999999999999 999999999996 43 4554
No 254
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.74 E-value=4.7e-05 Score=69.49 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=36.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
...||+|||||+.|+.+|+.++.+|++|+|+|++ +...|.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~-D~AsGT 50 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKG-DLASGT 50 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecC-cccCcc
Confidence 6789999999999999999999999999999997 666554
No 255
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.73 E-value=4.9e-05 Score=70.25 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=37.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
.+.||+|||+|++|+++|..++++|++|+|+|+. ..+||..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~-~~~gg~~ 55 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERT-EYVGGTT 55 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCCcc
Confidence 4679999999999999999999999999999997 7788864
No 256
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.72 E-value=4.5e-05 Score=68.04 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=31.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+||+|||+|++|+++|+.|+++|++|+|+|++
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~ 34 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKG 34 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence 478999999999999999999999999999985
No 257
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.72 E-value=4e-05 Score=70.95 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=33.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGR 102 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~ 102 (189)
..||+|||+|.+||+||+.+++.| .+|+|+||. ...+|.
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~-~~~~g~ 44 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKV-YPMRSH 44 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEcc-CCCCCC
Confidence 468999999999999999999874 799999997 665553
No 258
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.72 E-value=0.00027 Score=63.46 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=33.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHcC---CeEEEEecCCCCCCcCce
Q 041557 64 PHVKIIGGGMAVLACALRLDKRG---VKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g---~~v~v~e~~~~~~gg~~~ 104 (189)
++|+|||+|++|+.+|..|.+.- ..|.|||+. ...|+-+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~-~~~G~Gia 44 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPR-PNFGQGIA 44 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccc-cccCCCcc
Confidence 57999999999999999998763 129999997 88887654
No 259
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.71 E-value=4.2e-05 Score=70.81 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=33.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCCcC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~gg~ 102 (189)
..||+|||+|++||+||+.+++. |.+|+|+||. ...+|.
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~-~~~~~~ 43 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKV-YPMRSH 43 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEcc-CCCCCC
Confidence 46899999999999999999987 5899999997 665554
No 260
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.71 E-value=0.00026 Score=63.83 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=59.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++++|||||+.|+-.|..+++.|.+|+|+|+. +.+-. ..++++.+.+....
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~-~~iLp----------------------~~D~ei~~~~~~~l----- 224 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERG-DRILP----------------------GEDPEISKELTKQL----- 224 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC-CCCCC----------------------cCCHHHHHHHHHHH-----
Confidence 467999999999999999999999999999996 33111 12334444333311
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK 184 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~ 184 (189)
.. .+++++++++|+.++..+++..+++.++
T Consensus 225 ----------~~--~gv~i~~~~~v~~~~~~~~~v~v~~~~g 254 (454)
T COG1249 225 ----------EK--GGVKILLNTKVTAVEKKDDGVLVTLEDG 254 (454)
T ss_pred ----------Hh--CCeEEEccceEEEEEecCCeEEEEEecC
Confidence 11 3789999999999998777655555443
No 261
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.71 E-value=0.00055 Score=61.44 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=55.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++|+|||+|..|+-+|..|++.|.+|+|+|+. +.+... + ++++...+.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~~l~~------------~----------d~~~~~~l~~------- 221 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFL-DRALPN------------E----------DAEVSKEIAK------- 221 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecC-CCcCCc------------c----------CHHHHHHHHH-------
Confidence 358999999999999999999999999999985 322110 1 1222222222
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE 181 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~ 181 (189)
.|.. .|++++++++|+.++..++.+.+.+
T Consensus 222 --------~l~~--~gV~i~~~~~v~~i~~~~~~~~v~~ 250 (466)
T PRK07818 222 --------QYKK--LGVKILTGTKVESIDDNGSKVTVTV 250 (466)
T ss_pred --------HHHH--CCCEEEECCEEEEEEEeCCeEEEEE
Confidence 2221 3899999999999987666665543
No 262
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.70 E-value=0.00048 Score=61.93 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=31.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++|+|||+|++|+.+|..|++.|.+|+|+|+.
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~ 212 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAA 212 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence 368999999999999999999999999999986
No 263
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.70 E-value=3.6e-05 Score=67.91 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=28.1
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
||+|||||+||+.||+.+++.|.+|+||....+.+|.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~ 37 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGE 37 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccc
Confidence 6999999999999999999999999999332144443
No 264
>PRK13748 putative mercuric reductase; Provisional
Probab=97.68 E-value=0.00039 Score=63.68 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=56.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++++|||+|..|+-+|..|++.|.+|+|+++. .. + . .+ ++.+.+.+..
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~----l-----~----~~----------d~~~~~~l~~------- 318 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARS-TL----F-----F----RE----------DPAIGEAVTA------- 318 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-cc----c-----c----cc----------CHHHHHHHHH-------
Confidence 368999999999999999999999999999974 21 0 0 01 1223222222
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCC
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG 183 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~ 183 (189)
.+.. .|++++++++|+.++.+++.+.+.+.+
T Consensus 319 --------~l~~--~gI~i~~~~~v~~i~~~~~~~~v~~~~ 349 (561)
T PRK13748 319 --------AFRA--EGIEVLEHTQASQVAHVDGEFVLTTGH 349 (561)
T ss_pred --------HHHH--CCCEEEcCCEEEEEEecCCEEEEEecC
Confidence 1211 389999999999998777777776544
No 265
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.68 E-value=0.00061 Score=61.36 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=55.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++|+|||+|..|+.+|..|++.|.+|+|+++. +.+... .++.+...+..
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~-~~~l~~----------------------~d~~~~~~~~~------- 232 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEAL-PAFLAA----------------------ADEQVAKEAAK------- 232 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCC-CccCCc----------------------CCHHHHHHHHH-------
Confidence 368999999999999999999999999999986 332110 02223222111
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE 181 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~ 181 (189)
.+.. .|++++++++|+.++..+++..+..
T Consensus 233 --------~l~~--~gi~i~~~~~v~~i~~~~~~v~v~~ 261 (475)
T PRK06327 233 --------AFTK--QGLDIHLGVKIGEIKTGGKGVSVAY 261 (475)
T ss_pred --------HHHH--cCcEEEeCcEEEEEEEcCCEEEEEE
Confidence 1211 3899999999999987766655543
No 266
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.68 E-value=0.00061 Score=60.61 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=56.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++++|||+|+.|+-+|..|++.|.+|+|+++. +.+... + ++.+...+..
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~-~~~l~~------------~----------~~~~~~~l~~------- 207 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAA-SLFLPR------------E----------DRDIADNIAT------- 207 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCCC------------c----------CHHHHHHHHH-------
Confidence 358999999999999999999999999999986 322110 0 1122222211
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCC
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG 183 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~ 183 (189)
.+.. .|++++++++|++++.+++.+.+.+.+
T Consensus 208 --------~l~~--~gV~v~~~~~v~~i~~~~~~v~v~~~~ 238 (441)
T PRK08010 208 --------ILRD--QGVDIILNAHVERISHHENQVQVHSEH 238 (441)
T ss_pred --------HHHh--CCCEEEeCCEEEEEEEcCCEEEEEEcC
Confidence 1221 389999999999998777777776544
No 267
>PRK14727 putative mercuric reductase; Provisional
Probab=97.68 E-value=0.00043 Score=62.45 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=56.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhc
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLL 143 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (189)
++++|||+|..|+-+|..|++.|.+|+|+++. .. + . .+ ++.+.+.+.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~----l-----~----~~----------d~~~~~~l~--------- 235 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TL----L-----F----RE----------DPLLGETLT--------- 235 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CC----C-----C----cc----------hHHHHHHHH---------
Confidence 68999999999999999999999999999864 11 0 0 01 112222211
Q ss_pred CchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557 144 GYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK 184 (189)
Q Consensus 144 ~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~ 184 (189)
+.+.. .|++++++++|+.++.+++.+.+.+.++
T Consensus 236 ------~~L~~--~GV~i~~~~~V~~i~~~~~~~~v~~~~g 268 (479)
T PRK14727 236 ------ACFEK--EGIEVLNNTQASLVEHDDNGFVLTTGHG 268 (479)
T ss_pred ------HHHHh--CCCEEEcCcEEEEEEEeCCEEEEEEcCC
Confidence 12221 3899999999999987777777766543
No 268
>PRK02106 choline dehydrogenase; Validated
Probab=97.67 E-value=5.7e-05 Score=69.40 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=32.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHH-cCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDK-RGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~-~g~~v~v~e~~ 95 (189)
..+|++|||+|.+|+.+|.+|++ .|++|+|+|++
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG 38 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAG 38 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCC
Confidence 35799999999999999999999 79999999998
No 269
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.66 E-value=0.00049 Score=61.90 Aligned_cols=78 Identities=12% Similarity=0.041 Sum_probs=54.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++|+|||+|+.|+-+|..|++.|.+|+|+|+. +.+... + ++++...+.+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~-~~il~~------------~----------d~~~~~~l~~------- 223 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYL-DRICPG------------T----------DTETAKTLQK------- 223 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCC-CCCCCC------------C----------CHHHHHHHHH-------
Confidence 468999999999999999999999999999986 432110 1 1122222111
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEE
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLG 180 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~ 180 (189)
.|.. .|++++++++|++++..++++.+.
T Consensus 224 --------~l~~--~gV~i~~~~~V~~i~~~~~~v~v~ 251 (466)
T PRK06115 224 --------ALTK--QGMKFKLGSKVTGATAGADGVSLT 251 (466)
T ss_pred --------HHHh--cCCEEEECcEEEEEEEcCCeEEEE
Confidence 1221 389999999999998766666554
No 270
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.66 E-value=6.1e-05 Score=68.97 Aligned_cols=39 Identities=41% Similarity=0.525 Sum_probs=33.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
...||+|||+|.+||++|+.+++. .+|+|+||. ...+|.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~-~~~~g~ 45 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKG-PLSEGS 45 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEecc-CCCCCC
Confidence 357999999999999999999886 899999997 666663
No 271
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.66 E-value=5e-05 Score=70.62 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=30.9
Q ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCC
Q 041557 66 VKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLE 100 (189)
Q Consensus 66 v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~g 100 (189)
|+|||+|++||+||..+++.|.+|+|+||. ..++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~-~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYV-DAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEec-CCCC
Confidence 689999999999999999999999999997 6443
No 272
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.65 E-value=6.4e-05 Score=69.56 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=32.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEG 101 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg 101 (189)
..||+|||+|++||++|+.+++. .+|+|+||. ...+|
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~-~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKL-YPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCC-CCCCC
Confidence 57899999999999999999986 899999996 55444
No 273
>PRK14694 putative mercuric reductase; Provisional
Probab=97.64 E-value=0.00056 Score=61.45 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=56.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++++|||+|+.|+-+|..|++.|.+|+|+++. ..+. ..++.+.+.+..
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~l~-----------------------~~~~~~~~~l~~------- 226 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARS-RVLS-----------------------QEDPAVGEAIEA------- 226 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC-CCCC-----------------------CCCHHHHHHHHH-------
Confidence 368999999999999999999999999999864 2110 011222222221
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCe
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGK 184 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~ 184 (189)
.+.. .|++++++++|..++.+++.+.+.++++
T Consensus 227 --------~l~~--~GI~v~~~~~v~~i~~~~~~~~v~~~~~ 258 (468)
T PRK14694 227 --------AFRR--EGIEVLKQTQASEVDYNGREFILETNAG 258 (468)
T ss_pred --------HHHh--CCCEEEeCCEEEEEEEcCCEEEEEECCC
Confidence 1211 3899999999999987777676665443
No 274
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=97.63 E-value=6e-05 Score=66.87 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=37.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCCcCceee
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR------GVKSNVFDMGNPDLEGRMGTR 106 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~------g~~v~v~e~~~~~~gg~~~~~ 106 (189)
...||+||||||+||++|.+|.+. -++|+|+|+. ..+||...+.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKa-a~~GghtlSG 124 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKA-AEVGGHTLSG 124 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeec-cccCCceecc
Confidence 468999999999999999999754 3679999998 9999986543
No 275
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.61 E-value=8.2e-05 Score=69.34 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=29.2
Q ss_pred CEEEECCCHHHHHHHHHHH----HcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLD----KRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~----~~g~~v~v~e~~ 95 (189)
||+|||+|.|||+||+.++ +.|.+|+|+||.
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~ 35 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKA 35 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEcc
Confidence 6999999999999999998 679999999996
No 276
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=97.61 E-value=0.00011 Score=63.81 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHH
Q 041557 77 ACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVD 134 (189)
Q Consensus 77 ~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~ 134 (189)
+||+.|+++|++|+|+|+. +.+||++.+...+.....+|.|.+++....+.+.++++
T Consensus 1 ~AA~~L~~~G~~v~vlEa~-~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~ 57 (419)
T TIGR03467 1 SAAVELARAGARVTLFEAR-PRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLR 57 (419)
T ss_pred ChHHHHHhCCCceEEEecC-CCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHH
Confidence 4899999999999999998 99999998877654322488899888866555555444
No 277
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.56 E-value=0.00083 Score=61.05 Aligned_cols=81 Identities=17% Similarity=0.012 Sum_probs=54.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhc
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLL 143 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (189)
++++|||+|..|+-+|..|++.|.+|+|+++. .+... + ++.+.+.+..
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~l~~------------~----------d~~~~~~l~~-------- 230 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS--IPLRG------------F----------DRQCSEKVVE-------- 230 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--ccccc------------C----------CHHHHHHHHH--------
Confidence 57999999999999999999999999999864 11000 1 1122222222
Q ss_pred CchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCee
Q 041557 144 GYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKT 185 (189)
Q Consensus 144 ~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~ 185 (189)
.|.. .|+++++++.|..++..++...|.+.+++
T Consensus 231 -------~l~~--~GV~i~~~~~v~~v~~~~~~~~v~~~~g~ 263 (499)
T PTZ00052 231 -------YMKE--QGTLFLEGVVPINIEKMDDKIKVLFSDGT 263 (499)
T ss_pred -------HHHH--cCCEEEcCCeEEEEEEcCCeEEEEECCCC
Confidence 1211 37999999999999876555556554433
No 278
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00011 Score=63.47 Aligned_cols=33 Identities=42% Similarity=0.774 Sum_probs=30.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
++||+|||||++|++|++.|.++|.++.|+-++
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 579999999999999999999999999999865
No 279
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.55 E-value=0.00011 Score=67.79 Aligned_cols=40 Identities=30% Similarity=0.469 Sum_probs=35.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
..+||+|||+|.|||.+|..++++|.+|+|+||. ...+|.
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~-~~~rg~ 44 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKA-PPKRGH 44 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcc-ccCCCc
Confidence 4679999999999999999999999999999997 555543
No 280
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=97.54 E-value=0.0001 Score=64.83 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=32.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...||+|||||.+|.+.|+.|++.|.+|.|+||+
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 4678999999999999999999999999999986
No 281
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.53 E-value=0.0008 Score=60.48 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=32.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLE 100 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~g 100 (189)
...||++||||+.|.+++..|.+. .++|.||||- +.++
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl-~~~A 41 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERL-DSVA 41 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEec-Ccch
Confidence 357999999999999999999988 4789999995 6654
No 282
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.52 E-value=0.0009 Score=59.37 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=55.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++|+|||+|+.|+-+|..|.+.|.+|+++++. +.+... .+ ++.+.+.+.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~-~~~l~~-----------~~----------~~~~~~~l~~------- 199 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLE-DRILPD-----------SF----------DKEITDVMEE------- 199 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCC-cccCch-----------hc----------CHHHHHHHHH-------
Confidence 468999999999999999999999999999986 322110 01 1223322222
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCC
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENG 183 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~ 183 (189)
.+.. .|++++++++|++++.+++.+.+.+++
T Consensus 200 --------~l~~--~gI~v~~~~~v~~i~~~~~~~~v~~~~ 230 (444)
T PRK09564 200 --------ELRE--NGVELHLNEFVKSLIGEDKVEGVVTDK 230 (444)
T ss_pred --------HHHH--CCCEEEcCCEEEEEecCCcEEEEEeCC
Confidence 1111 379999999999997654445555444
No 283
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.52 E-value=0.00057 Score=59.52 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=28.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRG--VKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~ 95 (189)
++|+|||+|++|+.+|..|++++ .+|+|++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~ 36 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITAD 36 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCC
Confidence 58999999999999999998864 579999986
No 284
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.51 E-value=0.00018 Score=62.41 Aligned_cols=111 Identities=16% Similarity=0.166 Sum_probs=56.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCCCC---cCce-eeeeCCcceeeecceeeEeeCCc----hhHHHHH
Q 041557 64 PHVKIIGGGMAVLACALRLDKRG-VKSNVFDMGNPDLE---GRMG-TRMIGRQPLIFDHATQFFTVNDS----RFGELVD 134 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~~~~~g---g~~~-~~~~~~~~~~~~~g~~~~~~~~~----~~~~~l~ 134 (189)
.|+++||.||++|++|..|.+.+ .+++.||+. +... |++. .....- .+.-|+ .+..+| .|.+++.
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~-~~f~Wh~gmll~~~~~q~-~fl~Dl----vt~~~P~s~~sflnYL~ 76 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERR-PSFSWHPGMLLPGARMQV-SFLKDL----VTLRDPTSPFSFLNYLH 76 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH---EEEEES--SS--TTGGG--SS-B-SS--TTSSS----STTT-TTSTTSHHHHHH
T ss_pred eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecC-CCCCcCCccCCCCCcccc-cccccc----CcCcCCCCcccHHHHHH
Confidence 58999999999999999999887 899999985 5432 2221 111100 001111 112222 2333332
Q ss_pred ------HHhhhhhhcC-c---hHHHHHHhccCCCcEEEeCceeEEEEEeCC----eEEEEe
Q 041557 135 ------VCWKVVLLLG-Y---SKSQNLNIFQTSKVNVVRTCWISNLEPFNG----MWYLGE 181 (189)
Q Consensus 135 ------~~~~~~~~~~-~---~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~----~w~l~~ 181 (189)
.|...+...+ . .++.+|.... ..-.++++++|++|+..++ .|+|.+
T Consensus 77 ~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~-~~~~v~~~~~V~~I~~~~~~~~~~~~V~~ 136 (341)
T PF13434_consen 77 EHGRLYEFYNRGYFFPSRREFNDYLRWVAEQ-LDNQVRYGSEVTSIEPDDDGDEDLFRVTT 136 (341)
T ss_dssp HTT-HHHHHHH--SS-BHHHHHHHHHHHHCC-GTTTEEESEEEEEEEEEEETTEEEEEEEE
T ss_pred HcCChhhhhhcCCCCCCHHHHHHHHHHHHHh-CCCceEECCEEEEEEEecCCCccEEEEEE
Confidence 2222222211 1 2334454431 1234999999999998654 599988
No 285
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.50 E-value=0.00099 Score=60.02 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=54.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhc
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLL 143 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (189)
++++|||+|+.|+-+|..|++.|.+|+|+|+. +.+.. ..++++.+.+..
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~il~----------------------~~d~~~~~~~~~-------- 223 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMF-DQVIP----------------------AADKDIVKVFTK-------- 223 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecC-CCCCC----------------------cCCHHHHHHHHH--------
Confidence 68999999999999999999999999999986 43211 012223322222
Q ss_pred CchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557 144 GYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE 181 (189)
Q Consensus 144 ~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~ 181 (189)
.|.. .++++++++|+.++..+++..+..
T Consensus 224 -------~l~~---~v~i~~~~~v~~i~~~~~~~~v~~ 251 (471)
T PRK06467 224 -------RIKK---QFNIMLETKVTAVEAKEDGIYVTM 251 (471)
T ss_pred -------HHhh---ceEEEcCCEEEEEEEcCCEEEEEE
Confidence 2222 278999999999987766666643
No 286
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.48 E-value=0.00083 Score=64.35 Aligned_cols=85 Identities=16% Similarity=0.173 Sum_probs=56.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++++|||||+.|+-+|..|++.|.+|+|+|.. +.+-.+ . + ++.+...+..
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~-~~ll~~----~-------l----------d~~~~~~l~~------- 190 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHA-PGLMAK----Q-------L----------DQTAGRLLQR------- 190 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccC-Cchhhh----h-------c----------CHHHHHHHHH-------
Confidence 467999999999999999999999999999985 332110 0 1 1122222222
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEeCCeee
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGENGKTA 186 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~~~~~~ 186 (189)
.+.. .||++++++.|+.+..++....|.+.++..
T Consensus 191 --------~l~~--~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~ 224 (785)
T TIGR02374 191 --------ELEQ--KGLTFLLEKDTVEIVGATKADRIRFKDGSS 224 (785)
T ss_pred --------HHHH--cCCEEEeCCceEEEEcCCceEEEEECCCCE
Confidence 1111 389999999999997654444555555543
No 287
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.46 E-value=0.00014 Score=62.94 Aligned_cols=34 Identities=32% Similarity=0.393 Sum_probs=31.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...+|+|||+|+.|+++|+.|+++|.+++++|+.
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf 39 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQF 39 (399)
T ss_pred cceeEEEEcccccchHHHHHHHhcCCeEEEEecc
Confidence 4678999999999999999999999999999985
No 288
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.46 E-value=0.00014 Score=70.56 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=32.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...||+|||+|.+||++|+.+++.|.+|+|+||.
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~ 45 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKA 45 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3579999999999999999999999999999996
No 289
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.45 E-value=0.0012 Score=59.84 Aligned_cols=77 Identities=18% Similarity=0.115 Sum_probs=52.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhhc
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLLL 143 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (189)
.+++|||+|..|+-+|..|++.|.+|+|+++. .+ .. .+ ++++.+.+..
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~--~~--------l~----~~----------d~~~~~~l~~-------- 228 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS--IL--------LR----GF----------DQDCANKVGE-------- 228 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec--cc--------cc----cc----------CHHHHHHHHH--------
Confidence 47999999999999999999999999999863 11 00 01 2223322222
Q ss_pred CchHHHHHHhccCCCcEEEeCceeEEEEEeCCeEEEEe
Q 041557 144 GYSKSQNLNIFQTSKVNVVRTCWISNLEPFNGMWYLGE 181 (189)
Q Consensus 144 ~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~~w~l~~ 181 (189)
.|.. .|+++++++.++.++..++...|..
T Consensus 229 -------~L~~--~gV~i~~~~~v~~v~~~~~~~~v~~ 257 (484)
T TIGR01438 229 -------HMEE--HGVKFKRQFVPIKVEQIEAKVKVTF 257 (484)
T ss_pred -------HHHH--cCCEEEeCceEEEEEEcCCeEEEEE
Confidence 1211 3899999999999987666555544
No 290
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00093 Score=55.15 Aligned_cols=44 Identities=27% Similarity=0.332 Sum_probs=37.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC---CCCCCcCceee
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG---NPDLEGRMGTR 106 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~---~~~~gg~~~~~ 106 (189)
..+|+|||+||++-++|.+++++.++.+|||.. .-.+||++.+.
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTT 54 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTT 54 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeee
Confidence 347999999999999999999999999999953 14568888764
No 291
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.42 E-value=0.0016 Score=57.62 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=30.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++|+|||+|++|+.+|..|++.|.+|+++++.
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~ 169 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRS 169 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 468999999999999999999999999999986
No 292
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.42 E-value=0.00017 Score=65.74 Aligned_cols=34 Identities=32% Similarity=0.388 Sum_probs=30.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPD 98 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~ 98 (189)
...||+|||+|.+||+||+.++ +.+|+|+||. ..
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~-~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPA-PL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECC-CC
Confidence 3679999999999999999986 5699999997 54
No 293
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.41 E-value=0.00015 Score=66.26 Aligned_cols=31 Identities=35% Similarity=0.344 Sum_probs=29.7
Q ss_pred CEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRG-VKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~ 95 (189)
|++|||+|.+|+.+|.+|++.| ++|+|+|++
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG 32 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAG 32 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecC
Confidence 6899999999999999999998 799999998
No 294
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.39 E-value=0.0022 Score=58.24 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=28.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHc---CCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKR---GVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~---g~~v~v~e~~ 95 (189)
.++++|||||+.|+-+|..|... |.+|+|+++.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~ 222 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRN 222 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecC
Confidence 46899999999999999866544 9999999986
No 295
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.38 E-value=0.00026 Score=61.50 Aligned_cols=41 Identities=27% Similarity=0.482 Sum_probs=35.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC-CCCCCcCc
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG-NPDLEGRM 103 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~-~~~~gg~~ 103 (189)
..+|+|+|+|++||.+|.+|+..|.+|+|+|++ ...+||+.
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 568999999999999999999999999999875 14467763
No 296
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.36 E-value=0.00025 Score=63.27 Aligned_cols=32 Identities=50% Similarity=0.804 Sum_probs=30.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+||+|||+|++|+++|+.|+++|++|+|+|++
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~ 32 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAG 32 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 47999999999999999999999999999985
No 297
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.33 E-value=0.0019 Score=57.60 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=31.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++++|||+|..|+-+|..|++.|.+|+|+++.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 180 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRS 180 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecc
Confidence 367999999999999999999999999999986
No 298
>PRK07846 mycothione reductase; Reviewed
Probab=97.33 E-value=0.0003 Score=63.05 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=31.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
+|++|||+|++|..+|.. ..|.+|+|+|++ .+||.+.
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~--~~GGtC~ 38 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEKG--TFGGTCL 38 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeCC--CCCCccc
Confidence 689999999999999875 469999999984 6888753
No 299
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.32 E-value=0.00033 Score=65.14 Aligned_cols=38 Identities=32% Similarity=0.440 Sum_probs=33.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
+||+|||+|++|+.+|..+++.|.+|+|+|+. ...+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~-~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLN-LDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecc-cccccC
Confidence 47999999999999999999999999999986 444443
No 300
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.32 E-value=0.00031 Score=63.01 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=32.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
++|++|||+|++|..+|.. ..|.+|+|+|+ ..+||.+.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~--~~~GGtC~ 39 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK--GTFGGTCL 39 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC--CCCCCeee
Confidence 5799999999999998754 57999999998 47898753
No 301
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.31 E-value=0.0025 Score=56.89 Aligned_cols=33 Identities=36% Similarity=0.613 Sum_probs=31.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++++|||+|..|+-+|..|++.|.+|+|+++.
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~ 201 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERG 201 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC
Confidence 468999999999999999999999999999986
No 302
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.30 E-value=0.00027 Score=63.60 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=26.6
Q ss_pred CEEEECCCHHHHHHHHHHHHcC---CeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRG---VKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g---~~v~v~e~~ 95 (189)
+|+|||||++|..+|..|++.+ ++|+|+|+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 5999999999999999999999 899999985
No 303
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.28 E-value=0.0013 Score=63.46 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=30.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHc----CCeEEEEecCCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKR----GVKSNVFDMGNPDL 99 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~----g~~v~v~e~~~~~~ 99 (189)
..+|+|||+|++|+.+|..|.++ +++|+||+++ +.+
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e-~~~ 42 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEE-PRI 42 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECC-CCC
Confidence 35799999999999999999765 4799999987 554
No 304
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.28 E-value=0.00031 Score=64.55 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=32.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...+|++|||+|.+|..+|..|+..|++|+|+|++
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 45789999999999999999999999999999987
No 305
>PLN02546 glutathione reductase
Probab=97.27 E-value=0.0043 Score=57.36 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=55.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++|+|||+|..|+-+|..|++.|.+|+|+++. +.+... .++.+.+.+..
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~-~~il~~----------------------~d~~~~~~l~~------- 301 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQ-KKVLRG----------------------FDEEVRDFVAE------- 301 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEec-cccccc----------------------cCHHHHHHHHH-------
Confidence 468999999999999999999999999999986 332111 11222222222
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEe-CCeEEEEeCCe
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPF-NGMWYLGENGK 184 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~-~~~w~l~~~~~ 184 (189)
.|.. .||+++++++|+.++.. ++...|.++++
T Consensus 302 --------~L~~--~GV~i~~~~~v~~i~~~~~g~v~v~~~~g 334 (558)
T PLN02546 302 --------QMSL--RGIEFHTEESPQAIIKSADGSLSLKTNKG 334 (558)
T ss_pred --------HHHH--CCcEEEeCCEEEEEEEcCCCEEEEEECCe
Confidence 1211 38999999999999764 34455554443
No 306
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00042 Score=60.81 Aligned_cols=41 Identities=32% Similarity=0.392 Sum_probs=36.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCCcCce
Q 041557 63 NPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~gg~~~ 104 (189)
.++|.|||+||||+.+|..|.++ +..|.|||+. +.+.|..+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~-PvPFGLvR 62 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKL-PVPFGLVR 62 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecC-Ccccceee
Confidence 45899999999999999999885 5889999997 99999864
No 307
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.25 E-value=0.00026 Score=62.89 Aligned_cols=34 Identities=29% Similarity=0.592 Sum_probs=30.2
Q ss_pred EECCCHHHHHHHHHHHHcCCeEEEEecCCCC--CCcC
Q 041557 68 IIGGGMAVLACALRLDKRGVKSNVFDMGNPD--LEGR 102 (189)
Q Consensus 68 IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~--~gg~ 102 (189)
|||+|.+||++|+.+++.|.+|+|+||. +. .||.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~-~~~~~Gg~ 36 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAA-PRARRGGN 36 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCC-CCCcCCcC
Confidence 7999999999999999999999999997 53 4554
No 308
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.25 E-value=0.001 Score=63.68 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHc---CCeEEEEecCCCCC
Q 041557 66 VKIIGGGMAVLACALRLDKR---GVKSNVFDMGNPDL 99 (189)
Q Consensus 66 v~IiG~G~~Gl~~A~~l~~~---g~~v~v~e~~~~~~ 99 (189)
|+|||+|++|+.+|..|.++ +++|+|||+. +.+
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e-~~~ 36 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEE-PHP 36 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCC-CCC
Confidence 68999999999999998775 4789999987 554
No 309
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.22 E-value=0.0029 Score=61.23 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++++|||+|+.|+-+|..|++.|.+|+|+|..
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~ 177 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFA 177 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecc
Confidence 457999999999999999999999999999986
No 310
>PTZ00058 glutathione reductase; Provisional
Probab=97.16 E-value=0.0038 Score=57.72 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=31.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++|+|||+|..|+-+|..|++.|.+|+|+++.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~ 269 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARG 269 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEec
Confidence 468999999999999999999999999999986
No 311
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.12 E-value=0.00062 Score=60.46 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=31.0
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...++|+|||||.+|+.+|..|.+.+++|+|+|+.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~ 42 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPR 42 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCC
Confidence 34578999999999999999998778999999975
No 312
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00087 Score=58.49 Aligned_cols=39 Identities=23% Similarity=0.484 Sum_probs=32.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
..+||+||||||+|.++|.+.+|+|++.=|+- ...||+.
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a---erfGGQv 248 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA---ERFGGQV 248 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh---hhhCCee
Confidence 46899999999999999999999999865553 3568875
No 313
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.00 E-value=0.0066 Score=57.20 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=30.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++|+|||+|..|+-.|..|++.|.+|+|+|+.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~ 344 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYS 344 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 357999999999999999999999999999986
No 314
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.97 E-value=0.0078 Score=53.46 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=28.1
Q ss_pred CCEEEECCCHHHHHHHHHHHH--------------cCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDK--------------RGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~--------------~g~~v~v~e~~ 95 (189)
++|+|||+|+.|+-+|..|+. .+.+|+|++..
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 219 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAG 219 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCC
Confidence 589999999999999999875 36889999986
No 315
>PLN02785 Protein HOTHEAD
Probab=96.97 E-value=0.00091 Score=62.11 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=30.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..+|++|||+|.+|+.+|.+|++ +++|+|+|++
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G 86 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERG 86 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecC
Confidence 45899999999999999999999 6899999998
No 316
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.96 E-value=0.0011 Score=51.18 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|+|||+|..|.++|..|+++|++|+|+.+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 4899999999999999999999999999885
No 317
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.00079 Score=58.26 Aligned_cols=33 Identities=30% Similarity=0.571 Sum_probs=30.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...|.|||||++|.-+||+++++|+.|.++|..
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMR 35 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMR 35 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcc
Confidence 356999999999999999999999999999974
No 318
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.95 E-value=0.0011 Score=58.51 Aligned_cols=41 Identities=24% Similarity=0.411 Sum_probs=38.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
..+|++|||+||.|-.+|...++.|++...+|+. ..+||.+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr-~~LGGTc 78 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKR-GTLGGTC 78 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEecc-CccCcee
Confidence 5789999999999999999999999999999996 8999974
No 319
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.92 E-value=0.0009 Score=59.95 Aligned_cols=44 Identities=25% Similarity=0.305 Sum_probs=38.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCcee
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGT 105 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~ 105 (189)
.+.+|++|||+|.-||++|.+|++.|.+|.|+|+. ...||-..+
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerr-hv~gGaavt 55 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERR-HVIGGAAVT 55 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEe-eecCcceee
Confidence 45789999999999999999999999999999996 677776443
No 320
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=96.91 E-value=0.00046 Score=58.74 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=33.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcC------CeEEEEecCCCCCCc
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRG------VKSNVFDMGNPDLEG 101 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g------~~v~v~e~~~~~~gg 101 (189)
..++|+|+|||+.|.++|++|++++ +.|+|||+. .-.||
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~-~IA~g 53 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK-EIAGG 53 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec-ccccc
Confidence 4588999999999999999999998 789999985 44443
No 321
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.82 E-value=0.0016 Score=56.37 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=35.0
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCc
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRM 103 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~ 103 (189)
.|+|||+|++||+++..+-.+|-.|+++|+. ...||.-
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~-~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKA-GSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEecc-CCcCCcc
Confidence 4999999999999999999998889999997 8999973
No 322
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.81 E-value=0.0016 Score=56.27 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=27.5
Q ss_pred CEEEECCCHHHHHHHHHHHHc---CCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKR---GVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~---g~~v~v~e~~ 95 (189)
+|+|||||++|+.+|..|.++ +++|+|+|++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~ 34 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPS 34 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCC
Confidence 589999999999999999644 6899999986
No 323
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=96.75 E-value=0.0015 Score=56.87 Aligned_cols=34 Identities=32% Similarity=0.420 Sum_probs=30.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc----CCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR----GVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~----g~~v~v~e~~ 95 (189)
.+++|+|||||..|++.|+.|.++ |++|+|+|++
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErd 122 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERD 122 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEecc
Confidence 478999999999999999999755 6999999986
No 324
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.74 E-value=0.0022 Score=57.68 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=31.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++|+|||+|.+|+.+|..|+++|++|+++|+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3568999999999999999999999999999974
No 325
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.73 E-value=0.0013 Score=59.33 Aligned_cols=30 Identities=40% Similarity=0.582 Sum_probs=28.6
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|+|||+|++||++|+.|++. ++|+|+-|.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~ 38 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKG 38 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCC
Confidence 799999999999999999998 999999986
No 326
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.65 E-value=0.003 Score=49.94 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=27.4
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|+|||+|..|...|..++..|++|+++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4899999999999999999999999999975
No 327
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.64 E-value=0.0026 Score=56.88 Aligned_cols=31 Identities=29% Similarity=0.279 Sum_probs=29.6
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||.|.+|+++|..|+++|++|+++|+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 5899999999999999999999999999985
No 328
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.64 E-value=0.0052 Score=54.26 Aligned_cols=79 Identities=10% Similarity=0.094 Sum_probs=57.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
.++++|||+|..||-++.-..+.|-+|+++|-. +.+||.+. .+..+...+.
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~-~~i~~~mD----------------------~Eisk~~qr~------ 261 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFL-DQIGGVMD----------------------GEISKAFQRV------ 261 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEeh-hhhccccC----------------------HHHHHHHHHH------
Confidence 468999999999999999999999999999986 77776631 1122211111
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeCC-eEEEEe
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFNG-MWYLGE 181 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~~-~w~l~~ 181 (189)
|. .++++++++|+|+.+++.++ ...|..
T Consensus 262 ---------L~--kQgikF~l~tkv~~a~~~~dg~v~i~v 290 (506)
T KOG1335|consen 262 ---------LQ--KQGIKFKLGTKVTSATRNGDGPVEIEV 290 (506)
T ss_pred ---------HH--hcCceeEeccEEEEeeccCCCceEEEE
Confidence 11 14899999999999998877 455533
No 329
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.59 E-value=0.035 Score=45.90 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=31.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++|+|||+|.+|+-+|..|++.+.+|+++++.
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~ 173 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR 173 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence 3568999999999999999999999999999985
No 330
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.57 E-value=0.0084 Score=53.74 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=31.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++|+|||+|..|+-+|..|.+.|.+|+|+++.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~ 304 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRR 304 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence 4678999999999999999999999999999985
No 331
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.53 E-value=0.01 Score=52.81 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=20.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRG 86 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g 86 (189)
...|+|+|||+.|.-+|-+|+..-
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~ 178 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERL 178 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHH
Confidence 346999999999999999997664
No 332
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.47 E-value=0.0041 Score=55.84 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=35.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeee
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRM 107 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~ 107 (189)
...+||+|+|-|+.-..+|..|++.|.+|+.+|++ +..||.+++..
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n-~yYGg~~asl~ 47 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRN-DYYGGEWASLN 47 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SS-SSSCGGG-EE-
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCC-CCcCCchhccc
Confidence 35689999999999999999999999999999998 99999987654
No 333
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.38 E-value=0.0053 Score=54.68 Aligned_cols=34 Identities=32% Similarity=0.353 Sum_probs=31.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++|+|+|+|..|+.+|..|++.|++|+++|+.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999999999999999999999999999985
No 334
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=96.31 E-value=0.0031 Score=54.44 Aligned_cols=38 Identities=29% Similarity=0.451 Sum_probs=33.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCCC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR--GVKSNVFDMGNPDLE 100 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~--g~~v~v~e~~~~~~g 100 (189)
..+|++|||||+.||+.|++|.-+ +.+|.|+|+. ...+
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke-~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKE-KSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehh-hhhc
Confidence 468999999999999999999877 8999999996 4443
No 335
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.30 E-value=0.008 Score=45.32 Aligned_cols=30 Identities=27% Similarity=0.338 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 66 VKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 66 v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
|+|+|+|..|+..|+.|++.|++|+++.+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999999999986
No 336
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=96.26 E-value=0.0013 Score=53.95 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=34.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMGNPDLEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~~~~~gg~ 102 (189)
...||+|+|+|-+||++|+..+++. ++|.|+|.. -.+||-
T Consensus 75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S-VaPGGG 116 (328)
T KOG2960|consen 75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS-VAPGGG 116 (328)
T ss_pred hccceEEECCCccccceeeeeeccCCCceEEEEEee-ecCCCc
Confidence 3568999999999999999998664 789999997 777765
No 337
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.24 E-value=0.034 Score=49.51 Aligned_cols=34 Identities=35% Similarity=0.434 Sum_probs=29.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc----CCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR----GVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~----g~~v~v~e~~ 95 (189)
..+||+|+||||+|+++|..|... -++|+|+|..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred ccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 478999999999999999999744 2689999985
No 338
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.20 E-value=0.0071 Score=51.54 Aligned_cols=31 Identities=29% Similarity=0.474 Sum_probs=29.7
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||+|..|...|..|+++|++|+++|+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCC
Confidence 6999999999999999999999999999986
No 339
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.19 E-value=0.0077 Score=49.32 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=29.7
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+++|||+|..|...|..|.+.|+.|+++|+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcC
Confidence 6899999999999999999999999999986
No 340
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.17 E-value=0.027 Score=50.45 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=31.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
..++|+|||+|..|+-+|..|.+.|. +|+++++.
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 46789999999999999999999998 89999974
No 341
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=96.17 E-value=0.0078 Score=47.20 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=29.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++|+|||+|.++.-+|..|++.|.+|+++-|.
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~ 199 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRS 199 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecC
Confidence 4689999999999999999999999999999885
No 342
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.17 E-value=0.0083 Score=53.36 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=30.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRG--VKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~ 95 (189)
.++|+|||||.+||.+|..|.++- .+|+++|+.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCC
Confidence 568999999999999999999974 889999985
No 343
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.16 E-value=0.0097 Score=50.17 Aligned_cols=33 Identities=21% Similarity=0.134 Sum_probs=30.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++|.|||+|..|...|..|+++|++|+++|+.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 457999999999999999999999999999975
No 344
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.13 E-value=0.006 Score=48.50 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=26.0
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||.|..||.+|..|+++|++|+.+|.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCC
Confidence 5899999999999999999999999999964
No 345
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.10 E-value=0.0087 Score=50.40 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=30.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
++|.|||+|..|...|..|+++|++|+++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCC
Confidence 46999999999999999999999999999975
No 346
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.0074 Score=52.65 Aligned_cols=35 Identities=34% Similarity=0.503 Sum_probs=32.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557 60 ISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM 94 (189)
Q Consensus 60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~ 94 (189)
....+|.+|||||-+||+||.+.+..|.+|.++|-
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 34678999999999999999999999999999985
No 347
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.04 E-value=0.01 Score=50.03 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=30.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+|+|||+|..|...|..|+++|++|+++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 46999999999999999999999999999975
No 348
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.02 E-value=0.013 Score=50.55 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=30.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++|+|||+|..|...|..++..|++|+++|..
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 467999999999999999999999999999975
No 349
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.99 E-value=0.0032 Score=57.65 Aligned_cols=40 Identities=35% Similarity=0.557 Sum_probs=35.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGR 102 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~ 102 (189)
..+||+|||||..|..||+..+-+|+++.++|++ +...|.
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~-DF~SGT 105 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAG-DFASGT 105 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecc-cccCCc
Confidence 3589999999999999999999999999999997 665554
No 350
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.98 E-value=0.11 Score=46.95 Aligned_cols=85 Identities=18% Similarity=0.117 Sum_probs=57.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeeeCCcceeeecceeeEeeCCchhHHHHHHHhhhhhh
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMIGRQPLIFDHATQFFTVNDSRFGELVDVCWKVVLL 142 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~ 142 (189)
...|+++|+|..|+-+|..|...+++|++++.. +.+--+ ...+...+.++.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e-~~~~~~---------------------lf~~~i~~~~~~------- 263 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPE-PWLLPR---------------------LFGPSIGQFYED------- 263 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccC-ccchhh---------------------hhhHHHHHHHHH-------
Confidence 667999999999999999999999999999986 221111 111122222222
Q ss_pred cCchHHHHHHhccCCCcEEEeCceeEEEEEeC--CeEEEEeCCeee
Q 041557 143 LGYSKSQNLNIFQTSKVNVVRTCWISNLEPFN--GMWYLGENGKTA 186 (189)
Q Consensus 143 ~~~~~~~~~l~~~~~~v~v~~~t~V~~i~~~~--~~w~l~~~~~~~ 186 (189)
+|.. .+|+++.++.+.+++... ..-.|.+.++..
T Consensus 264 --------y~e~--kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~ 299 (478)
T KOG1336|consen 264 --------YYEN--KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKT 299 (478)
T ss_pred --------HHHh--cCeEEEEecceeecccCCCCcEEEEEeccCCE
Confidence 2222 389999999999998765 335566555544
No 351
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=95.98 E-value=0.011 Score=53.71 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=34.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcC----CeEEEEecCCCCCCcCce
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRG----VKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g----~~v~v~e~~~~~~gg~~~ 104 (189)
++++=|||+|+++|++|..|-+-+ -+|+|+|+. +.+||-+.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~-~~~GGsld 46 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEEL-DVPGGSLD 46 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCC-CCCCCccc
Confidence 456889999999999999998774 589999996 88887654
No 352
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.96 E-value=0.011 Score=49.99 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=30.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+|.|||+|..|...|..|+..|++|+++|..
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECC
Confidence 47999999999999999999999999999975
No 353
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.94 E-value=0.0085 Score=42.95 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=30.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+++|+|||+|..|..-+..|.+.|.+|+|+...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4678999999999999999999999999999875
No 354
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.92 E-value=0.015 Score=47.02 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=31.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+++|+|||||.+|+..+..|.+.|.+|+|++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4678999999999999999999999999999864
No 355
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=95.87 E-value=0.079 Score=47.71 Aligned_cols=35 Identities=34% Similarity=0.390 Sum_probs=30.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHc-----CCeEEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKR-----GVKSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~-----g~~v~v~e~~ 95 (189)
....+++|||+|++|+.+|+.|+.. .+.+.++|.+
T Consensus 16 ~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g 55 (486)
T COG2509 16 NAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVG 55 (486)
T ss_pred hhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEec
Confidence 3568899999999999999999864 5789999975
No 356
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.84 E-value=0.04 Score=51.81 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=30.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
..++|+|||+|..|+-+|..|.+.|. +|+|+++.
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~ 356 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRR 356 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 46789999999999999999999996 59999875
No 357
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.82 E-value=0.018 Score=44.62 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=30.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM 94 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~ 94 (189)
.+++|+|||||-.|+.-+..|.+.|.+|+|+..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 578899999999999999999999999999954
No 358
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.79 E-value=0.033 Score=48.40 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=27.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~ 95 (189)
...++|+|||||.++..++..|.+.+. +|+++-+.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~ 224 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRS 224 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECC
Confidence 456789999999999999999999875 78888875
No 359
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.78 E-value=0.015 Score=49.03 Aligned_cols=32 Identities=16% Similarity=0.345 Sum_probs=30.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
++|.|||+|..|...|..|+++|++|+++|..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCC
Confidence 56999999999999999999999999999975
No 360
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.74 E-value=0.089 Score=45.33 Aligned_cols=31 Identities=29% Similarity=0.546 Sum_probs=25.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHH----cC--CeEEEEe
Q 041557 63 NPHVKIIGGGMAVLACALRLDK----RG--VKSNVFD 93 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~----~g--~~v~v~e 93 (189)
.++|+|||+|++|+.+|..|++ +| .+|+|+.
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~ 181 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA 181 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 4589999999999999999975 34 4788883
No 361
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.69 E-value=0.024 Score=42.51 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=31.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~ 95 (189)
..++++|||+|-+|..++..|...|.+ ++|+.|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 468899999999999999999999987 9999875
No 362
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.69 E-value=0.02 Score=44.53 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=29.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...+|+|+|+|.+|+.|+..|...|.+|+++|..
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 3478999999999999999999999999999974
No 363
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=95.65 E-value=0.015 Score=54.03 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=34.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCC
Q 041557 60 ISSNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDMGNPDL 99 (189)
Q Consensus 60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~~~~~~ 99 (189)
....+|.+|||||-||+.+|.+|.+. .++|+|+|++ ..+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaG-g~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAG-GDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecC-CCC
Confidence 34679999999999999999999987 5799999997 554
No 364
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.64 E-value=0.018 Score=52.49 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=31.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++|+|||||..|+-+|..|+..|.+|+|+++.
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~ 384 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFA 384 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeC
Confidence 3578999999999999999999999999999975
No 365
>PRK10262 thioredoxin reductase; Provisional
Probab=95.59 E-value=0.022 Score=48.40 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=31.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++|+|||+|..|+-+|..|++.|.+|+++++.
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~ 178 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRR 178 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEEC
Confidence 3578999999999999999999999999999986
No 366
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.59 E-value=0.018 Score=48.47 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=28.7
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDM 94 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~ 94 (189)
+|+|||+|..|...|..|++.|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999999999999987
No 367
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.58 E-value=0.019 Score=48.17 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=29.2
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|+|||+|..|...|..|++.|++|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4899999999999999999999999999973
No 368
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.56 E-value=0.024 Score=47.81 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=30.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++|.|||+|..|...|..|+..|++|+++|..
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~ 36 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSD 36 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 356999999999999999999999999999975
No 369
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.53 E-value=0.024 Score=48.34 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+|+|||+|..|...|..|++.|++|+++.++
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 46999999999999999999999999999875
No 370
>PRK12831 putative oxidoreductase; Provisional
Probab=95.48 E-value=0.025 Score=51.02 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=32.0
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...++|+|||+|..|+-+|..|.+.|.+|+|+++.
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 45689999999999999999999999999999874
No 371
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.44 E-value=0.029 Score=45.17 Aligned_cols=34 Identities=35% Similarity=0.370 Sum_probs=31.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+++|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 5688999999999999999999999999999764
No 372
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.43 E-value=0.018 Score=52.86 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=30.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+||+|||||-||+-||+..++.|.+++++--+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 489999999999999999999999999998654
No 373
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.43 E-value=0.024 Score=49.72 Aligned_cols=43 Identities=26% Similarity=0.319 Sum_probs=38.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCce
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMG 104 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~ 104 (189)
...+|.+|||||-.|++.|++.+..|.++.|+|.. -.+||.+.
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~-f~lGGTCV 60 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP-FGLGGTCV 60 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC-CCcCceEE
Confidence 35789999999999999999999999999999985 68999753
No 374
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.41 E-value=0.024 Score=52.27 Aligned_cols=34 Identities=29% Similarity=0.334 Sum_probs=31.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++|+|||||..|+-+|..|++.|.+|+++++.
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~ 175 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVRE 175 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeC
Confidence 4578999999999999999999999999999986
No 375
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.37 E-value=0.025 Score=50.36 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=30.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+|.|||.|..|+.+|..|+++|++|+++|.+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCC
Confidence 56999999999999999999999999999975
No 376
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=95.36 E-value=0.026 Score=53.05 Aligned_cols=44 Identities=27% Similarity=0.390 Sum_probs=33.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecCCCCCCcCc
Q 041557 60 ISSNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMGNPDLEGRM 103 (189)
Q Consensus 60 ~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~~~~~gg~~ 103 (189)
.+...+|+|||+|..|+.+|+.|++.|.+ ++++|+..-..|+.|
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttw 80 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTW 80 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeecccccc
Confidence 34457899999999999999999999998 556666523334443
No 377
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.35 E-value=0.032 Score=47.38 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=30.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
++|.|||+|..|...|..|++.|++|+++|..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 56999999999999999999999999999974
No 378
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.35 E-value=0.026 Score=47.36 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=29.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+|.|||+|..|...|..|+++|++|+++|..
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCC
Confidence 46999999999999999999999999999964
No 379
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.29 E-value=0.025 Score=48.45 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=29.5
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||+|..|...|..|++.|++|+++++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 5999999999999999999999999999975
No 380
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.28 E-value=0.029 Score=51.20 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=31.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++|+|||+|.+|+-+|..|+..+.+|+|+++.
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~ 383 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFA 383 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEEC
Confidence 4678999999999999999999999999999986
No 381
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.19 E-value=0.13 Score=46.47 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=29.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
..++|+|||+|..|+-+|..+.+.|. +|++++..
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 46789999999999999999888886 68877654
No 382
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.12 E-value=0.041 Score=44.26 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
...+|+|||+|-.|...|..|++.|+ +++|+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999999999999999999999 69999974
No 383
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.12 E-value=0.032 Score=50.15 Aligned_cols=33 Identities=30% Similarity=0.390 Sum_probs=30.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++|.|+|.|.+|+++|..|.++|++|+++|..
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 46 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKK 46 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCC
Confidence 467999999999999999999999999999975
No 384
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.09 E-value=0.033 Score=47.50 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=29.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+|+|||+|..|...|..|++.|.+|+++.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 36999999999999999999999999999985
No 385
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.04 E-value=0.04 Score=48.38 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=31.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...+|+|||+|.+|+.+|..|...|.+|+++|+.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 4567999999999999999999999999999974
No 386
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.04 E-value=0.037 Score=50.26 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=31.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++|+|+|.|.+|++++..|...|.+|+++|..
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4568999999999999999999999999999964
No 387
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=94.98 E-value=0.038 Score=47.74 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=30.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~ 95 (189)
..++|+|||+|..|+-+|..|.+.|.+ |+|+++.
T Consensus 171 ~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 171 EGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 357899999999999999999999987 9999874
No 388
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.96 E-value=0.038 Score=49.18 Aligned_cols=33 Identities=30% Similarity=0.243 Sum_probs=30.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++++|+|+|.+|+++|..|++.|++|++.|+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~ 37 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGK 37 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 467999999999999999999999999999974
No 389
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.93 E-value=0.049 Score=42.70 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=31.2
Q ss_pred CCCCCEEEECCCH-HHHHHHHHHHHcCCeEEEEecC
Q 041557 61 SSNPHVKIIGGGM-AVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~-~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...++|+|||+|- +|..+|..|.++|.+|+++.+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 4678999999995 7999999999999999999975
No 390
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=94.88 E-value=0.043 Score=46.95 Aligned_cols=32 Identities=22% Similarity=0.439 Sum_probs=29.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
.+|.|||+|..|...|+.|+.+|+ +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 369999999999999999999887 89999974
No 391
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.86 E-value=0.043 Score=40.91 Aligned_cols=33 Identities=36% Similarity=0.409 Sum_probs=29.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
+.+|+|||+|-.|..+|..|++.|. +++|+|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999999999998 69999975
No 392
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.84 E-value=0.055 Score=43.46 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=31.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++++|+|.|-.|..+|..|.+.|++|+++|..
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4678999999999999999999999999999975
No 393
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.82 E-value=0.036 Score=49.09 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=29.5
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||.|..|+.+|..|++.|++|+++|+.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECC
Confidence 5899999999999999999999999999985
No 394
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.82 E-value=0.056 Score=46.30 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=29.6
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||+|..|...|..|++.|++|+++++.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 6999999999999999999999999999985
No 395
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.81 E-value=0.043 Score=50.21 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=30.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
-++|.|||+|.-|...|..|++.|++|+++|+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 356999999999999999999999999999975
No 396
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.80 E-value=0.045 Score=46.82 Aligned_cols=31 Identities=23% Similarity=0.413 Sum_probs=29.2
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||+|..|.+.|..|++.|++|+++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 4899999999999999999999999999984
No 397
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.78 E-value=0.053 Score=48.38 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=30.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++|+|+|.|.+|+++|..|+++|+.|+++|..
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~ 37 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAE 37 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 467999999999999999999999999999975
No 398
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.77 E-value=0.051 Score=48.56 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=31.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++|+|+|.|+.|+.+|..|...|.+|+++|..
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d 234 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVD 234 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 4678999999999999999999999999999875
No 399
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=94.73 E-value=0.05 Score=46.07 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||+|..|...|..|++.|++|+++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 5999999999999999999999999999985
No 400
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.72 E-value=0.054 Score=49.58 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=30.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++|.|||+|.-|...|..|++.|+.|+++|+.
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~ 39 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDAR 39 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 467999999999999999999999999999975
No 401
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.67 E-value=0.054 Score=49.63 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=31.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+..+|+|||+|++||.++..+...|..|+++|..
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~ 197 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR 197 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4678999999999999999999999999999974
No 402
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.67 E-value=0.057 Score=41.63 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=27.7
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||-|..|...|..|.++|++|.+||+.
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence 6899999999999999999999999999985
No 403
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.033 Score=48.89 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=31.0
Q ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557 59 PISSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM 94 (189)
Q Consensus 59 ~~~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~ 94 (189)
|....+||+|||||-+|.-+|..|+---..|+++|=
T Consensus 350 PLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF 385 (520)
T COG3634 350 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF 385 (520)
T ss_pred cccCCceEEEECCCcchHHHHHhHHhhhheeeeeec
Confidence 456789999999999999999999866567999884
No 404
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.60 E-value=0.048 Score=49.23 Aligned_cols=33 Identities=15% Similarity=-0.034 Sum_probs=30.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++|+|+|.|.+|.++|..|.++|.+|++.|..
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence 567999999999999999999999999999963
No 405
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=94.59 E-value=0.045 Score=49.33 Aligned_cols=36 Identities=33% Similarity=0.292 Sum_probs=32.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDL 99 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~ 99 (189)
.++|+|+|-|.+|+++|..|.++|..|+++|.. +..
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~-~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDR-PAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCC-CCc
Confidence 678999999999999999999999999999965 444
No 406
>PRK04148 hypothetical protein; Provisional
Probab=94.58 E-value=0.043 Score=41.60 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=29.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++++||.| .|...|..|++.|++|+.+|.+
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECC
Confidence 4679999999 9999999999999999999976
No 407
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.55 E-value=0.067 Score=45.55 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=30.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+|.|||+|..|.+.|..|.+.|++|+++++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46999999999999999999999999999985
No 408
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=94.52 E-value=0.064 Score=48.87 Aligned_cols=32 Identities=31% Similarity=0.362 Sum_probs=30.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+|.|||+|..|...|..|+++|++|+++|+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 46999999999999999999999999999975
No 409
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.52 E-value=0.059 Score=46.06 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=28.7
Q ss_pred CEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRG--VKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~ 95 (189)
+|.|||+|..|+++|+.|+.+| ..+.++|..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 5999999999999999999999 479999986
No 410
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=94.45 E-value=0.084 Score=50.31 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=31.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.-++|.|||+|..|...|..++..|++|+++|..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~ 345 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDIN 345 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCC
Confidence 4567999999999999999999999999999975
No 411
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.44 E-value=0.074 Score=45.29 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=31.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++++|||.|.+|+.++..|.+.|.+|+++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 4688999999999999999999999999999985
No 412
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.43 E-value=0.065 Score=48.43 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=31.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++|.|+|.|.+|+++|..|.++|++|+++|+.
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 4567999999999999999999999999999974
No 413
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.40 E-value=0.056 Score=47.87 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=29.1
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||.|..||..|..|++.|++|+.+|..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid 32 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDID 32 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 5899999999999999999999999999964
No 414
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.38 E-value=0.097 Score=37.51 Aligned_cols=30 Identities=33% Similarity=0.336 Sum_probs=27.2
Q ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 66 VKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 66 v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
|+|+|.|..|...+..|.+.+.+|+++|..
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 689999999999999999988899999986
No 415
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=94.38 E-value=0.074 Score=45.04 Aligned_cols=34 Identities=35% Similarity=0.372 Sum_probs=30.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
..++|+|||+|-+|.++|+.|++.|. +|+|+++.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35789999999999999999999997 79999985
No 416
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=94.35 E-value=0.055 Score=49.26 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=31.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...++|+|||||-||+-+|...++.|.+.+++-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 45689999999999999999999999998888764
No 417
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.32 E-value=0.058 Score=51.38 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=30.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
-++|+|||+|..|...|..++..|++|+++|..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~ 345 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDIN 345 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCC
Confidence 467999999999999999999999999999975
No 418
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.32 E-value=0.24 Score=44.75 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=30.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
..++++|||+|..|+-+|..+.+.|. +|+|+++.
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~ 315 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRR 315 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEec
Confidence 46789999999999999999999995 79999974
No 419
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.32 E-value=0.078 Score=46.07 Aligned_cols=34 Identities=32% Similarity=0.391 Sum_probs=31.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45789999999999999999999998 79999975
No 420
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.29 E-value=0.32 Score=48.01 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=30.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
..++|+|||+|+.|+.+|..|++.|. .|+|+|..
T Consensus 316 ~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~ 350 (985)
T TIGR01372 316 PGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR 350 (985)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccC
Confidence 35789999999999999999999995 58899875
No 421
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.26 E-value=0.16 Score=47.80 Aligned_cols=34 Identities=18% Similarity=0.340 Sum_probs=29.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
..++|+|||+|..|+-+|..+.+.|. +|+++.+.
T Consensus 467 ~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~ 501 (654)
T PRK12769 467 AGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRR 501 (654)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEec
Confidence 46789999999999999999999996 69988864
No 422
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=94.25 E-value=0.071 Score=50.92 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=31.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~ 95 (189)
...++|+|||||..|+-+|..|.+.|.+ |+|+++.
T Consensus 568 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 568 KFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 3568899999999999999999999987 9999874
No 423
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.12 E-value=0.074 Score=44.61 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=29.2
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||.|..|.+.|..|.++|++|+++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 5899999999999999999999999999975
No 424
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.10 E-value=0.09 Score=44.82 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=28.6
Q ss_pred CEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRG--VKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~ 95 (189)
+|+|||+|-.|.++|+.|+.+| ..+.++|+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~ 34 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN 34 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 6999999999999999999999 479999985
No 425
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.08 E-value=0.093 Score=44.54 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=31.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++++|||.|..|..+|..|...|.+|+++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~ 183 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARS 183 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4678999999999999999999999999999986
No 426
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.07 E-value=0.31 Score=44.09 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~ 95 (189)
.+.++|||+|++|..|+.+|.+.|. +++++-++
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~ 108 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKRE 108 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEecc
Confidence 5789999999999999999999985 46666544
No 427
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=94.03 E-value=0.053 Score=46.46 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=26.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcC-------CeEEEEe
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRG-------VKSNVFD 93 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g-------~~v~v~e 93 (189)
..+|+|||+|..||+.|+.+.+.+ .+|+|+.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~ 40 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVIS 40 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEec
Confidence 457999999999999998888854 4688885
No 428
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.94 E-value=0.088 Score=46.70 Aligned_cols=33 Identities=24% Similarity=0.205 Sum_probs=30.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..+|.|||-|.+|+++|..|.++|++|+++|..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~ 35 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKS 35 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357999999999999999999999999999975
No 429
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=93.93 E-value=0.084 Score=44.40 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=29.2
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||.|..|...|..|++.|++|+++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4899999999999999999999999999985
No 430
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.87 E-value=0.1 Score=46.55 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=32.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...++|+|||.|+.|+.+|..|...|.+|+++|..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~d 227 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVD 227 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCC
Confidence 35788999999999999999999999999999875
No 431
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.86 E-value=0.088 Score=41.14 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=28.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...+.++|+|=|..|-.+|..|+..|.+|+|.|.+
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~D 55 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRGLGARVTVTEID 55 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SS
T ss_pred eCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECC
Confidence 45788999999999999999999999999999985
No 432
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=93.85 E-value=0.093 Score=50.20 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=31.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.-++|.|||+|..|...|..++..|++|+++|..
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~ 367 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDAT 367 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCC
Confidence 4467999999999999999999999999999975
No 433
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.85 E-value=0.1 Score=42.67 Aligned_cols=34 Identities=32% Similarity=0.269 Sum_probs=30.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCe---EEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVK---SNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~---v~v~e~~ 95 (189)
...+++|+|+|-+|..+|..|.+.|.+ +.|+|+.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 456899999999999999999999975 9999985
No 434
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=93.80 E-value=0.94 Score=39.30 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=24.8
Q ss_pred CcEEEeCceeEEEEEeCCeEEEEeCCee
Q 041557 158 KVNVVRTCWISNLEPFNGMWYLGENGKT 185 (189)
Q Consensus 158 ~v~v~~~t~V~~i~~~~~~w~l~~~~~~ 185 (189)
|+++++++.|++|+.+++.|.|.+.++.
T Consensus 148 G~~i~~~~~V~~i~~~~~~~~v~t~~g~ 175 (381)
T TIGR03197 148 RLTLHFNTEITSLERDGEGWQLLDANGE 175 (381)
T ss_pred CcEEEeCCEEEEEEEcCCeEEEEeCCCC
Confidence 8999999999999988888999877665
No 435
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=93.80 E-value=0.076 Score=47.67 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=30.8
Q ss_pred CCCCEEEECCCHHHHH-HHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLA-CALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~-~A~~l~~~g~~v~v~e~~ 95 (189)
..++|.|||.|-+|++ +|..|.++|++|++.|..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~ 40 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLK 40 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCC
Confidence 3467999999999999 699999999999999975
No 436
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.79 E-value=0.089 Score=47.42 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=29.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+++|+|+|.|.+|.++|..|. +|.+|+++|..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~ 37 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDL 37 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHh-CCCEEEEECCC
Confidence 4678999999999999999998 49999999963
No 437
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=93.75 E-value=0.16 Score=34.89 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=29.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc-CCeEEEEec
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR-GVKSNVFDM 94 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~~v~v~e~ 94 (189)
..++++|+|.|-.|..++..|.+. +.++.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 457899999999999999999998 578888886
No 438
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.73 E-value=0.091 Score=47.68 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=30.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++|.|+|.|.+|+++|..|.++|++|.++|..
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~ 39 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTR 39 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCC
Confidence 467999999999999999999999999999964
No 439
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.68 E-value=0.13 Score=44.74 Aligned_cols=34 Identities=38% Similarity=0.426 Sum_probs=31.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
...+|+|||+|-.|..+|..|++.|. +++|+|.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45789999999999999999999998 89999974
No 440
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.67 E-value=0.16 Score=43.79 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=30.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
..+|+|||+|-.|..+|+.|+..|+ ++.|+|..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~ 39 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV 39 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 4679999999999999999999996 89999975
No 441
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.64 E-value=0.14 Score=43.16 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=30.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
...+|+|||.|-.|..+|..|++.|. +++|+|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46789999999999999999999994 79999964
No 442
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.64 E-value=0.15 Score=40.99 Aligned_cols=34 Identities=38% Similarity=0.388 Sum_probs=31.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
...+|+|||.|-.|..+|..|++.|. +++|+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46789999999999999999999997 79999975
No 443
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.63 E-value=0.14 Score=40.41 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=30.5
Q ss_pred CCCCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++++|+|+ |..|..+|..|++.|.+|+++.+.
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999997 999999999999999999999875
No 444
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=0.097 Score=46.76 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=42.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCCcCceeeee
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMGNPDLEGRMGTRMI 108 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~~~~~gg~~~~~~~ 108 (189)
+...||+|||-|..=...|...++.|.+|+=+|.+ +..||.|++...
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn-~yYGg~waSfSm 52 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSN-EYYGGNWASFSM 52 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCc-cccCCcccceee
Confidence 45789999999999999998899999999999997 999999987554
No 445
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.61 E-value=0.11 Score=45.99 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=30.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~ 95 (189)
.+|+|||+|-.|..+|+.|+++| .+|+|.+|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 46999999999999999999999 899999985
No 446
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.60 E-value=0.13 Score=43.59 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=29.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
.+|+|||+|..|...|+.|+..|+ .|.++|..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~ 35 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIV 35 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECC
Confidence 479999999999999999999876 89999975
No 447
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=93.59 E-value=0.13 Score=42.95 Aligned_cols=34 Identities=35% Similarity=0.317 Sum_probs=30.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++++|+|+|-+|.+++..|++.|.+|+++++.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3567999999999999999999999999999875
No 448
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=93.58 E-value=0.1 Score=46.25 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=27.1
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||.|..|+.+|..|+. |++|+++|.+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d 31 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDIL 31 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECC
Confidence 48999999999999988885 9999999974
No 449
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.50 E-value=0.15 Score=40.05 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=28.5
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVK-SNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~ 95 (189)
+|+|||+|-.|...|..|++.|.. ++|+|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999999985 9999975
No 450
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=93.40 E-value=0.15 Score=43.27 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=30.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~ 95 (189)
..+.++|+|+|-+|.++|+.|++.|.+ |+|+.+.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 457899999999999999999999986 9999885
No 451
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=93.39 E-value=0.12 Score=50.86 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=31.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++|+|||||..|+-+|..+.+.|.+|+++.+.
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 5689999999999999999999999999999763
No 452
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=93.38 E-value=0.17 Score=37.99 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=30.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~ 95 (189)
..++++|||+|..|...|..|.+.| ..|+++++.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3567999999999999999999996 789999875
No 453
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.38 E-value=0.14 Score=46.97 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=31.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+..+|+|+|+|..|+.++..+...|..|+++|..
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~ 196 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR 196 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999999999999999999999999999975
No 454
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.37 E-value=0.11 Score=49.49 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=30.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHH-HcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLD-KRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~-~~g~~v~v~e~~ 95 (189)
.-++|+|||+|..|...|..++ ..|++|+++|..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~ 342 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDIN 342 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCC
Confidence 3467999999999999999999 889999999975
No 455
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.36 E-value=0.17 Score=37.86 Aligned_cols=31 Identities=32% Similarity=0.425 Sum_probs=28.6
Q ss_pred CEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
+|+|||.|-.|..+|..|.+.|+ +++|+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998 69999975
No 456
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=93.32 E-value=0.15 Score=41.25 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=28.5
Q ss_pred CEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIG-GGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.||| +|..|.++|..|.+.|++|+++++.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 489997 7999999999999999999999875
No 457
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=93.31 E-value=0.14 Score=45.89 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=31.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++|+|+|.|..|..+|..|...|.+|+++|..
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~d 244 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVD 244 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5778999999999999999999999999999975
No 458
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.28 E-value=0.17 Score=40.96 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=30.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVK-SNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~-v~v~e~~ 95 (189)
...+|+|||+|-.|..+|..|++.|.. ++|+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467899999999999999999999985 9999975
No 459
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.20 E-value=0.17 Score=42.94 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=29.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~ 95 (189)
..+|.|||.|..|.+.|..|.+.|+ .|+++++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3579999999999999999999995 89999875
No 460
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=93.12 E-value=0.15 Score=43.25 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=29.5
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||.|..|...|..|+++|++|++|++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~ 33 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVN 33 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 5999999999999999999999999999985
No 461
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.12 E-value=0.13 Score=44.16 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=30.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++|.|||+|.-|...|..++..|++|+++|..
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 367999999999999999999978999999975
No 462
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=93.12 E-value=0.13 Score=48.84 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=29.8
Q ss_pred CCCEEEECCCHHHHHHHHHHH-HcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLD-KRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~-~~g~~v~v~e~~ 95 (189)
-++|.|||+|..|...|..++ +.|++|+++|..
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~ 337 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDIN 337 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 357999999999999999988 589999999975
No 463
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.01 E-value=0.12 Score=39.19 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=26.7
Q ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 66 VKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 66 v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
++|+|+|..+...+..+...|++|+|+|..
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r 30 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPR 30 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 589999999999999999999999999975
No 464
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.01 E-value=0.14 Score=45.96 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=30.6
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.++|.|||.|-+|+++|..|.++|++|.+.|..
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 467999999999999999999999999999964
No 465
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=92.99 E-value=0.56 Score=46.48 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=29.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHc-CC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKR-GV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~-g~-~v~v~e~~ 95 (189)
..++|+|||||..|+-+|..+.+. |. +|+|+++.
T Consensus 665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr 700 (1012)
T TIGR03315 665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 700 (1012)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEcc
Confidence 467899999999999999998876 75 79999875
No 466
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=92.98 E-value=0.16 Score=44.29 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=28.4
Q ss_pred CEEEECCCHHHHHHHHHHHHcC--------CeEEEEec
Q 041557 65 HVKIIGGGMAVLACALRLDKRG--------VKSNVFDM 94 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g--------~~v~v~e~ 94 (189)
+|.|||+|.-|.++|..|+++| ++|+++.+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVF 38 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEe
Confidence 4899999999999999999999 99999987
No 467
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=92.96 E-value=0.12 Score=46.64 Aligned_cols=34 Identities=15% Similarity=0.092 Sum_probs=31.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..++|+|||+|.+|+-.|..|.+.+.+|+++.+.
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 5688999999999999999999999999999874
No 468
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.95 E-value=0.19 Score=41.27 Aligned_cols=33 Identities=27% Similarity=0.372 Sum_probs=30.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEec
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDM 94 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~ 94 (189)
..++|+|||||..++.-+..|.+.|.+|+|+-.
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 467899999999999999999999999999954
No 469
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.94 E-value=0.22 Score=42.86 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=30.1
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~ 95 (189)
+.+|+|||+|-.|.++|+.|...|+ .+.|||..
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4689999999999999999999997 79999975
No 470
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=92.89 E-value=0.16 Score=43.06 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=27.7
Q ss_pred EEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 66 VKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 66 v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
|.|||+|..|..+|+.|+.+|+ .|+++|..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5899999999999999999887 99999975
No 471
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=92.88 E-value=0.031 Score=47.25 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=25.5
Q ss_pred EEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557 66 VKIIGGGMAVLACALRLDKRG--VKSNVFDMG 95 (189)
Q Consensus 66 v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~ 95 (189)
.+|+|||++|.+||.+|+... .+++|+-..
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitas 33 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITAS 33 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence 689999999999999999875 468887764
No 472
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=92.86 E-value=0.2 Score=42.08 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=30.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~ 95 (189)
..++++|+|+|-+|.+++..|+..| .+|+|+.+.
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4578999999999999999999999 689999875
No 473
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.86 E-value=0.18 Score=44.39 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=31.1
Q ss_pred CCCCEEEEC-CCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIG-GGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG-~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...+|+||| .|..|...|..|.++|+.|+++++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 456799999 8999999999999999999999975
No 474
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.84 E-value=0.65 Score=41.45 Aligned_cols=37 Identities=27% Similarity=0.256 Sum_probs=31.8
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMGNPD 98 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~~~~ 98 (189)
....|++.||-||+-|+.|..|.+.+ .+++.+|+. +.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerk-p~ 40 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERK-PD 40 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecC-CC
Confidence 34678999999999999999999886 779999985 54
No 475
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=92.84 E-value=0.19 Score=41.79 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=31.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+..+++|+|+|..+..+|..+...|++|+|+|..
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R 132 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSR 132 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCC
Confidence 4578999999999999999999999999999864
No 476
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.79 E-value=0.2 Score=44.52 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=31.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...+++|+|.|..|..+|..|.+.|+.|+++|++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~ 263 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERD 263 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4578999999999999999999999999999985
No 477
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.77 E-value=0.19 Score=44.93 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=30.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.--|+|||-|-+|+++|..|.++|++|++.|..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~ 38 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSR 38 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCC
Confidence 446999999999999999999999999999974
No 478
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.71 E-value=0.23 Score=41.03 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=30.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
...+|+|||+|-.|..+|..|++.|. +++|+|.+
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45789999999999999999999997 68888875
No 479
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=92.68 E-value=0.16 Score=45.66 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=32.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...|+|+|||+|.+|...|-.|++.|.+|+++-+.
T Consensus 173 ~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs 207 (443)
T COG2072 173 LRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRS 207 (443)
T ss_pred cCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecC
Confidence 36799999999999999999999999999999885
No 480
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.67 E-value=0.14 Score=42.45 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=32.0
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 61 SSNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 61 ~~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
...+.|.|||+|.-|...|.-.+..|+.|.++|++
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~ 43 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDAN 43 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCC
Confidence 34577999999999999999999999999999986
No 481
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.65 E-value=0.18 Score=45.92 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=27.8
Q ss_pred CEEEECCCHHHHHHHHHHHHcC--CeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRG--VKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g--~~v~v~e~~ 95 (189)
+|+|||.|..|+.+|..|+++| ++|+.+|.+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 4999999999999999999985 789999864
No 482
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.59 E-value=0.27 Score=37.21 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=28.0
Q ss_pred CEEEECC-CHHHHHHHHHHHHcCC--eEEEEecC
Q 041557 65 HVKIIGG-GMAVLACALRLDKRGV--KSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~-G~~Gl~~A~~l~~~g~--~v~v~e~~ 95 (189)
+|.|||+ |..|.++|+.|...++ ++.++|..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN 35 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence 5899999 9999999999999975 69999975
No 483
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=92.53 E-value=0.19 Score=42.18 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||.|..|...|..|++.|++|+++++.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~ 34 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRN 34 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 6999999999999999999999999999975
No 484
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=92.52 E-value=0.2 Score=42.51 Aligned_cols=31 Identities=29% Similarity=0.342 Sum_probs=29.4
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||.|..|...|..|.++|++|.++++.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~ 32 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHD 32 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECC
Confidence 5899999999999999999999999999986
No 485
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.48 E-value=0.25 Score=40.95 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=30.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
...+|+|||.|-.|..+|..|++.|. +++|+|.+
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46789999999999999999999997 68898864
No 486
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.43 E-value=0.26 Score=40.18 Aligned_cols=34 Identities=29% Similarity=0.319 Sum_probs=30.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
...+|+|||.|-.|..+|..|++.|. +++|+|.+
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45789999999999999999999997 68888864
No 487
>PLN02494 adenosylhomocysteinase
Probab=92.35 E-value=0.25 Score=44.94 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=31.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..+.|+|+|.|..|..+|..|...|.+|+++|..
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~d 286 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEID 286 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4688999999999999999999999999999875
No 488
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.33 E-value=0.21 Score=44.36 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=29.3
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|+|+|+|..|..+|..|.+.|++|+++|++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~ 32 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTD 32 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 5999999999999999999999999999975
No 489
>PRK08017 oxidoreductase; Provisional
Probab=92.30 E-value=0.25 Score=39.85 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=29.3
Q ss_pred CCEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGG-GMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~-G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+.++|.|+ |..|..+|..|+++|++|+++.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~ 35 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRK 35 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 46999998 999999999999999999999875
No 490
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=92.30 E-value=0.2 Score=44.42 Aligned_cols=31 Identities=32% Similarity=0.384 Sum_probs=28.9
Q ss_pred CEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 65 HVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 65 ~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
+|.|||-|-+|+++|..|.++|++|++.|..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~ 31 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLK 31 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCC
Confidence 4789999999999999999999999999964
No 491
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.30 E-value=0.28 Score=42.18 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~ 95 (189)
...+|+|||+|-.|.++|+.|+..| ..+.|+|..
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 3467999999999999999999999 589999975
No 492
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.29 E-value=0.25 Score=42.41 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=29.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCC--eEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGV--KSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~--~v~v~e~~ 95 (189)
+.+|+|||+|-.|.++|+.|...+. .+.|||..
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~ 37 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV 37 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4589999999999999999999886 58999975
No 493
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=92.29 E-value=0.23 Score=45.78 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=30.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..+.++|+|+|-+|.++|+.|++.|.+|+++.+.
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~ 411 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGARVVIANRT 411 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999999999999999999999999999874
No 494
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.28 E-value=0.26 Score=41.76 Aligned_cols=33 Identities=33% Similarity=0.300 Sum_probs=29.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
.++++|+|+|-++.++++.|++.|. +++|++|.
T Consensus 127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 5789999999999999999999997 68899875
No 495
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=92.27 E-value=0.27 Score=45.32 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=31.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 63 NPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 63 ~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..+++|+|.|..|...|..|.++|++|+++|++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d 449 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETS 449 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECC
Confidence 468999999999999999999999999999986
No 496
>PRK08328 hypothetical protein; Provisional
Probab=92.22 E-value=0.29 Score=40.14 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=30.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
...+|+|||+|-.|..+|..|++.|. +++|+|.+
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45789999999999999999999997 58888864
No 497
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=92.18 E-value=0.28 Score=41.43 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=30.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGV-KSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~-~v~v~e~~ 95 (189)
..++++|||+|=++.++++.|++.|. +|+|+.|.
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35789999999999999999999997 69999875
No 498
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.10 E-value=0.15 Score=44.13 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=31.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
..-+|+|||+|.+|+-+|.-+.-.|-+|+|+|.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 4567999999999999999999999999999975
No 499
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=92.07 E-value=0.26 Score=43.96 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=30.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHcC-CeEEEEecC
Q 041557 62 SNPHVKIIGGGMAVLACALRLDKRG-VKSNVFDMG 95 (189)
Q Consensus 62 ~~~~v~IiG~G~~Gl~~A~~l~~~g-~~v~v~e~~ 95 (189)
...+|+|||+|..|..+|..|...| .+|+++++.
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT 213 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4578999999999999999999999 689999875
No 500
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.01 E-value=0.26 Score=42.75 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=29.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Q 041557 64 PHVKIIGGGMAVLACALRLDKRGVKSNVFDMG 95 (189)
Q Consensus 64 ~~v~IiG~G~~Gl~~A~~l~~~g~~v~v~e~~ 95 (189)
.+|.|||+|--|.+.|..|+++|+.|.++-+.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecC
Confidence 36999999999999999999999999999874
Done!