BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041558
(495 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 162/333 (48%), Gaps = 16/333 (4%)
Query: 4 LIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASI 63
L I N LSG I L L++S+NQF IP L +L +L L EN + I
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285
Query: 64 PSNV-GKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIP-NEIGKMRSL 121
P + G +L L L+GN F +P FG+ + L + LS N +P + + KMR L
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 122 NILEV--------LPLSVSNLTNPK-ELALLYNCLSGSIPPSL-ENP--MLARLGLDFNH 169
+L++ LP S++NL+ L L N SG I P+L +NP L L L N
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405
Query: 170 FKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKC 229
F IP +L +C+ L+ L + N L+ I +LG L + L N GEIP
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 230 PKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQ 289
L TL + N +T IP + N + + LS N + GEIPK +G+L +L L L N
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 290 LVGCLPTEIGSPIELEYLDFSVNRFNNLIPESL 322
G +P E+G L +LD + N FN IP ++
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 122/430 (28%), Positives = 177/430 (41%), Gaps = 68/430 (15%)
Query: 9 NSLSGFIPLN-IGNSQFLWGLDLSNNQFSSSIPLSFGNLS-NLIFLYLYENSYFASIPSN 66
N+ SG +P++ + + L LDLS N+FS +P S NLS +L+ L L N++ I N
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 67 VGK--LKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNIL 124
+ + +L +L L N F IP + N + L + LS N L +IP+ +G + L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL--- 444
Query: 125 EVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIPKSLRSCTS 183
++L L N L G IP L L L LDFN IP L +CT+
Sbjct: 445 -------------RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 184 LIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTIT 243
L + + N LT +I + +G L + LS N+F G IP+ C L L + N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 244 KGIPRE--------------------IRNS--------------------------SQRQ 257
IP I+N S R
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611
Query: 258 ALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNL 317
+++ G S++ L + N L G +P EIGS L L+ N +
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671
Query: 318 IPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL-GPIPNSIAFRGASV 376
IP+ + +L L+ L L NKL +P+ + L +E+DLS N L GPIP F
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731
Query: 377 EALKGNKRLC 386
N LC
Sbjct: 732 AKFLNNPGLC 741
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 208 LTFIDLSRNNFHGEIPS--NREKCPKLGTLGVLMNTITKGIPREIRNS---SQRQALDLS 262
LT +DLSRN+ G + + + C L L V NT+ P ++ + + LDLS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLS 159
Query: 263 LNHIIGE------IPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNN 316
N I G + G+L L + N++ G ++ + LE+LD S N F+
Sbjct: 160 ANSISGANVVGWVLSDGCGELK---HLAISGNKISG--DVDVSRCVNLEFLDVSSNNFST 214
Query: 317 LIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYN-FLGPIP 366
IP L + L +L + NKL + + + + L++S N F+GPIP
Sbjct: 215 GIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%)
Query: 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYF 60
M L + N LSG+IP IG+ +L+ L+L +N S SIP G+L L L L N
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 61 ASIPSNVGKLKSLGDLQLNGNQFISYIP 88
IP + L L ++ L+ N IP
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIP 721
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 115/333 (34%), Positives = 162/333 (48%), Gaps = 16/333 (4%)
Query: 4 LIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASI 63
L I N LSG I L L++S+NQF IP L +L +L L EN + I
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 282
Query: 64 PSNV-GKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIP-NEIGKMRSL 121
P + G +L L L+GN F +P FG+ + L + LS N +P + + KMR L
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 342
Query: 122 NILEV--------LPLSVSNLTNPK-ELALLYNCLSGSIPPSL-ENP--MLARLGLDFNH 169
+L++ LP S++NL+ L L N SG I P+L +NP L L L N
Sbjct: 343 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 402
Query: 170 FKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKC 229
F IP +L +C+ L+ L + N L+ I +LG L + L N GEIP
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 230 PKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQ 289
L TL + N +T IP + N + + LS N + GEIPK +G+L +L L L N
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 290 LVGCLPTEIGSPIELEYLDFSVNRFNNLIPESL 322
G +P E+G L +LD + N FN IP ++
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 122/430 (28%), Positives = 177/430 (41%), Gaps = 68/430 (15%)
Query: 9 NSLSGFIPLN-IGNSQFLWGLDLSNNQFSSSIPLSFGNLS-NLIFLYLYENSYFASIPSN 66
N+ SG +P++ + + L LDLS N+FS +P S NLS +L+ L L N++ I N
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 67 VGK--LKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNIL 124
+ + +L +L L N F IP + N + L + LS N L +IP+ +G + L
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL--- 441
Query: 125 EVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIPKSLRSCTS 183
++L L N L G IP L L L LDFN IP L +CT+
Sbjct: 442 -------------RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 488
Query: 184 LIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTIT 243
L + + N LT +I + +G L + LS N+F G IP+ C L L + N
Sbjct: 489 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 244 KGIPRE--------------------IRNS--------------------------SQRQ 257
IP I+N S R
Sbjct: 549 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 608
Query: 258 ALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNL 317
+++ G S++ L + N L G +P EIGS L L+ N +
Sbjct: 609 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 668
Query: 318 IPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL-GPIPNSIAFRGASV 376
IP+ + +L L+ L L NKL +P+ + L +E+DLS N L GPIP F
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 728
Query: 377 EALKGNKRLC 386
N LC
Sbjct: 729 AKFLNNPGLC 738
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 20/171 (11%)
Query: 208 LTFIDLSRNNFHGEIPS--NREKCPKLGTLGVLMNTITKGIPREIRNS---SQRQALDLS 262
LT +DLSRN+ G + + + C L L V NT+ P ++ + + LDLS
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLS 156
Query: 263 LNHIIGE------IPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNN 316
N I G + G+L L + N++ G ++ + LE+LD S N F+
Sbjct: 157 ANSISGANVVGWVLSDGCGELK---HLAISGNKISG--DVDVSRCVNLEFLDVSSNNFST 211
Query: 317 LIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYN-FLGPIP 366
IP L + L +L + NKL + + + + L++S N F+GPIP
Sbjct: 212 GIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 261
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 44/88 (50%)
Query: 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYF 60
M L + N LSG+IP IG+ +L+ L+L +N S SIP G+L L L L N
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 61 ASIPSNVGKLKSLGDLQLNGNQFISYIP 88
IP + L L ++ L+ N IP
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIP 718
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 103/243 (42%), Gaps = 8/243 (3%)
Query: 151 IPPSLEN-PMLARLGLD-FNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYL 208
IP SL N P L L + N+ IP ++ T L L N++ I + L L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 209 TFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQR-QALDLSLNHII 267
+D S N G +P + P L + N I+ IP + S+ ++ +S N +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 268 GEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFN-NLIPESLENLL 326
G+IP LN L + L RN L G GS + + + N +L L
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK-- 244
Query: 327 KLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL-GPIPNSIAFRGASVEALKGNKRL 385
L+ L L N++ LP+ L +L L++S+N L G IP + V A NK L
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
Query: 386 CVS 388
C S
Sbjct: 305 CGS 307
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 97/241 (40%), Gaps = 42/241 (17%)
Query: 9 NSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVG 68
N+L G IP I L L +++ S +IP + L+ L N+ ++P ++
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 69 KLKSLGDLQLNGNQFISYIPSSFGNLTNLSTS-RLSKNKLFVSIPNEIGKMRSLNILEVL 127
L +L + +GN+ IP S+G+ + L TS +S+N+
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR--------------------- 185
Query: 128 PLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRL 187
L+G IPP+ N LA + L N + S + ++
Sbjct: 186 -------------------LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 188 CRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIP 247
+N+L D+ + +G+ L +DL N +G +P + L +L V N + IP
Sbjct: 227 HLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Query: 248 R 248
+
Sbjct: 286 Q 286
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 3 LLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFAS 62
L I H N +SG IP + + L LD S N S ++P S +L NL+ + N +
Sbjct: 106 LYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 63 IPSNVGKLKSL-GDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKL 107
IP + G L + ++ N+ IP +F NL NL+ LS+N L
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 9/102 (8%)
Query: 28 LDLSNNQFSSSIPLS-FGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFIS 85
L L+NNQ +S +PL F +L+ L LYL N S+PS V +L L +L+LN NQ S
Sbjct: 88 LGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 86 YIPSSFGNLTNLSTSRLSKNKLFVSIP----NEIGKMRSLNI 123
+F LTNL T LS N+L S+P + +GK++++ +
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITL 186
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 262 SLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPES 321
SL+ + IP + KL+ L+ L +L +L+ N+ L
Sbjct: 25 SLDSVPSGIPADTEKLD------LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 322 LENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNSIAFRGASVEALKG 381
++L +L LGL N+L + + L Q +L L N L +P+ + R ++ L+
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138
Query: 382 N 382
N
Sbjct: 139 N 139
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 11/134 (8%)
Query: 28 LDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYI 87
LDL + ++ +F L+ L +L L N L LG L L NQ S
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 88 PSSFGNLTNLSTSRLSKNKLFVSIP----NEIGKMRSL----NILEVLPLSV-SNLTNPK 138
F +LT L L N+L S+P + + K++ L N L+ +P LTN +
Sbjct: 100 LGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 139 ELALLYNCLSGSIP 152
L+L N L S+P
Sbjct: 159 TLSLSTNQLQ-SVP 171
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 9/102 (8%)
Query: 28 LDLSNNQFSSSIPLS-FGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFIS 85
L L+NNQ +S +PL F +L+ L LYL N S+PS V +L L +L+LN NQ S
Sbjct: 88 LGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 86 YIPSSFGNLTNLSTSRLSKNKLFVSIP----NEIGKMRSLNI 123
+F LTNL T LS N+L S+P + +GK++++ +
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITL 186
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 262 SLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPES 321
SL+ + IP + KL+ L+ L +L +L+ N+ L
Sbjct: 25 SLDSVPSGIPADTEKLD------LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 322 LENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNSIAFRGASVEALKG 381
++L +L LGL N+L + + L Q +L L N L +P+ + R ++ L+
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138
Query: 382 N 382
N
Sbjct: 139 N 139
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 11/134 (8%)
Query: 28 LDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYI 87
LDL + ++ +F L+ L +L L N L LG L L NQ S
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 88 PSSFGNLTNLSTSRLSKNKLFVSIP----NEIGKMRSL----NILEVLPLSV-SNLTNPK 138
F +LT L L N+L S+P + + K++ L N L+ +P LTN +
Sbjct: 100 LGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 139 ELALLYNCLSGSIP 152
L+L N L S+P
Sbjct: 159 TLSLSTNQLQ-SVP 171
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Query: 241 TITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEI-G 299
++ GIP + Q L L N I P L +L +L L NQL G LP +
Sbjct: 33 SVPAGIP------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFD 85
Query: 300 SPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSY 359
S +L LD N+ L + L+ L L +C NKL ELP+ +E+L + L L
Sbjct: 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144
Query: 360 NFLGPIPN 367
N L IP+
Sbjct: 145 NQLKSIPH 152
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 10/123 (8%)
Query: 37 SSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTN 96
+S+P G +N LYL++N P L +L +L L NQ + F +LT
Sbjct: 32 ASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89
Query: 97 LSTSRLSKNKLFV---SIPNEIGKMRSL----NILEVLPLSVSNLTNPKELALLYNCLSG 149
L+ L N+L V ++ + + ++ L N L LP + LT+ LAL N L
Sbjct: 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK- 148
Query: 150 SIP 152
SIP
Sbjct: 149 SIP 151
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Query: 15 IPLNI-GNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNV-GKLKS 72
+P I N+Q L+ L +NQ + P F +L NL LYL N ++P V L
Sbjct: 34 VPAGIPTNAQILY---LHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQ 89
Query: 73 LGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEV 126
L L L NQ + F L +L + NKL +P I ++ L L +
Sbjct: 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLAL 142
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 299 GSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLS 358
G P + L N+ L P ++L+ L L L N+L + + L Q + LDL
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96
Query: 359 YNFLGPIPNSIAFR 372
N L +P+++ R
Sbjct: 97 TNQLTVLPSAVFDR 110
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 14 FIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSL 73
+P + N + L +DLSNN+ S+ SF N++ L+ L L N P LKSL
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 74 GDLQLNGNQFISYIPS-SFGNLTNLSTSRLSKNKLFVS 110
L L+GN IS +P +F +L+ LS + N L+
Sbjct: 105 RLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLYCD 141
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 48 NLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKL 107
++ LYL N F +P + K L + L+ N+ + SF N+T L T LS N+L
Sbjct: 32 DVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 108 FVSIPNEIGKMRSLNILEV 126
P ++SL +L +
Sbjct: 91 RCIPPRTFDGLKSLRLLSL 109
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 270 IPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLH 329
+PK + + + +L L NQ +P E+ + L +D S NR + L +S N+ +L
Sbjct: 25 LPKGIPR--DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 330 YLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIP 366
L L N+L P+ + L L L N + +P
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 98/226 (43%), Gaps = 14/226 (6%)
Query: 2 ALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFA 61
ALL + NN ++ + N + L L L NN+ S P +F L L LYL +N
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LK 113
Query: 62 SIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSL 121
+P + K+L +L+++ N+ S F L + L N L S E G + +
Sbjct: 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGAFQGM 170
Query: 122 NILEVLPLSVSNLTN-PK-------ELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKR 172
L + ++ +N+T P+ EL L N ++ SL+ LA+LGL FN
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 173 TIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNF 218
SL + L L N N L + + L + Y+ + L NN
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNI 275
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%)
Query: 301 PIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYN 360
P + LD N+ + +NL LH L L NK+ + P LV+ L LS N
Sbjct: 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 361 FLGPIPNSI 369
L +P +
Sbjct: 111 QLKELPEKM 119
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 104/238 (43%), Gaps = 16/238 (6%)
Query: 2 ALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFA 61
ALL + NN ++ + N + L L L NN+ S P +F L L LYL +N
Sbjct: 55 ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LK 113
Query: 62 SIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSL 121
+P + K+L +L+++ N+ S F L + L N L S E G + +
Sbjct: 114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGAFQGM 170
Query: 122 NILEVLPLSVSNLTN-PK-------ELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKR 172
L + ++ +N+T P+ EL L N ++ SL+ LA+LGL FN
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230
Query: 173 TIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCP 230
SL + L L N N L + + L + Y+ + L NN I SN + CP
Sbjct: 231 VDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA-IGSN-DFCP 285
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%)
Query: 301 PIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYN 360
P + LD N+ + +NL LH L L NK+ + P LV+ L LS N
Sbjct: 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 361 FLGPIPNSI 369
L +P +
Sbjct: 111 QLKELPEKM 119
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 274 LGKLNSLIKLILRRNQLVGCLPTEIGSPIE-LEYLDFSVNRFNNLIPESLENLLKLHYLG 332
L +L +L LIL NQL LP + + L+ L N+ +L + L L YL
Sbjct: 81 LKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 333 LCKNKLVQELPK-ILEKLVQFSELDLSYNFLGPIPNSIAFRGASVEALK 380
L N+L Q LPK + +KL +ELDLSYN L +P + + ++ L+
Sbjct: 140 LAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 276 KLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCK 335
KL +L +L+L NQL L YL+ + N+ +L + L L L L
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 336 NKLVQELPK-ILEKLVQFSELDLSYNFLGPIPNSIAFRGASVE 377
N+L Q LP+ + +KL Q +L L N L +P+ + R S++
Sbjct: 167 NQL-QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 30 LSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFISYIP 88
L NQ S F L+NL +L L N S+P V KL +L +L L+ NQ S
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174
Query: 89 SSFGNLTNLSTSRLSKNKLFVSIPNEI 115
F LT L RL +N+L S+P+ +
Sbjct: 175 GVFDKLTQLKDLRLYQNQL-KSVPDGV 200
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 30 LSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFISYIP 88
L+ NQ S F L+NL L L EN S+P V KL +L L L NQ S
Sbjct: 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPK 150
Query: 89 SSFGNLTNLSTSRLSKNKL 107
F LTNL+ LS N+L
Sbjct: 151 GVFDKLTNLTELDLSYNQL 169
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 56/120 (46%), Gaps = 11/120 (9%)
Query: 42 SFGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTS 100
+ L+NL +L L N S+P+ V KL +L +L L NQ S F LTNL+
Sbjct: 80 ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 101 RLSKNKL-------FVSIPNEIGKMRSLNILEVLPLSV-SNLTNPKELALLYNCLSGSIP 152
L+ N+L F + N S N L+ LP V LT K+L L N L S+P
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVP 197
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 28 LDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFISY 86
L+L++NQ S F L+NL L L N S+P V KL L DL+L NQ S
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 87 IPSSFGNLTNLSTSRLSKNKLFVSIP 112
F LT+L L N + P
Sbjct: 197 PDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 65 SNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEI-GKMRSL-- 121
S + +L +L L L GNQ S F LTNL L +N+L S+P+ + K+ +L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTY 137
Query: 122 -----NILEVLPLSV-SNLTNPKELALLYNCLSGSIP 152
N L+ LP V LTN EL L YN L S+P
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLP 173
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 10/139 (7%)
Query: 241 TITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGS 300
++ GIP +Q LDL N + +L SL +L L N+L LP + +
Sbjct: 21 SVPTGIP------AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFN 73
Query: 301 PI-ELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPK-ILEKLVQFSELDLS 358
+ L YL+ S N+ +L + L +L L L N+L Q LP + +KL Q +L L
Sbjct: 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLY 132
Query: 359 YNFLGPIPNSIAFRGASVE 377
N L +P+ + R S++
Sbjct: 133 QNQLKSVPDGVFDRLTSLQ 151
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 43 FGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSR 101
F L++L +L L N S+P+ V KL L +L LN NQ S F LT L R
Sbjct: 72 FNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130
Query: 102 LSKNKLFVSIPNEI 115
L +N+L S+P+ +
Sbjct: 131 LYQNQL-KSVPDGV 143
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 28 LDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFISY 86
LDL N S F L++L LYL N S+P+ V KL SL L L+ NQ S
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 87 IPSSFGNLTNLSTSRLSKNKLFVSIPNEI 115
F LT L L+ N+L S+P+ +
Sbjct: 92 PNGVFDKLTQLKELALNTNQL-QSLPDGV 119
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 28 LDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFISY 86
L+LS NQ S F L+ L L L N S+P V KL L DL+L NQ S
Sbjct: 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSV 139
Query: 87 IPSSFGNLTNLSTSRLSKNKLFVSIP 112
F LT+L L N + P
Sbjct: 140 PDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 28 LDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFISY 86
L L NQ S P F +L+ L +L L N S+P V KL SL +L+L NQ
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRV 172
Query: 87 IPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPL 129
+F LT L T +L N+L +P G SL L++L L
Sbjct: 173 PEGAFDKLTELKTLKLDNNQL-KRVPE--GAFDSLEKLKMLQL 212
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 239 MNTITKGIPREIRNSSQRQALDLSLNHI-IGEIPKELGKLNSLIKLILRRNQLVGCLPTE 297
+ T+ GI +E++N D L + IG +L +L +L L RNQL P
Sbjct: 73 LQTLPAGIFKELKNLETLWVTDNKLQALPIGVF----DQLVNLAELRLDRNQLKSLPPRV 128
Query: 298 IGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDL 357
S +L YL N +L + L L L L N+L + +KL + L L
Sbjct: 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188
Query: 358 SYNFLGPIPNSIAFRGASVEALK 380
N L +P AF S+E LK
Sbjct: 189 DNNQLKRVPEG-AFD--SLEKLK 208
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 47/173 (27%)
Query: 28 LDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGK------------------ 69
LDL +N+ SS +F L+ L LYL +N ++P+ + K
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 70 -------LKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLN 122
L +L +L+L+ NQ S P F +LT L+ ++S+ N
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT---------YLSL--------GYN 143
Query: 123 ILEVLPLSV-SNLTNPKELALLYNCLSGSIPPSLENPM--LARLGLDFNHFKR 172
L+ LP V LT+ KEL LYN +P + + L L LD N KR
Sbjct: 144 ELQSLPKGVFDKLTSLKELR-LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
Query: 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYF 60
+A L + N L P + L L L N+ S F L++L L LY N+
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY-NNQL 169
Query: 61 ASIPSNV-GKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKN 105
+P KL L L+L+ NQ +F +L L +L +N
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 28 LDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFISY 86
L LS NQ S F L+ L LYL+EN S+P+ V KL L +L L+ NQ S
Sbjct: 57 LSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSV 115
Query: 87 IPSSFGNLTNLSTSRLSKNKLFVSIP 112
F LT+L L N S P
Sbjct: 116 PDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 302 IELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPK-ILEKLVQFSELDLSYN 360
+L L S N+ +L + L KL L L +NKL Q LP + +KL Q EL L N
Sbjct: 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKELALDTN 110
Query: 361 FLGPIPNSIAFRGASVEAL 379
L +P+ I R S++ +
Sbjct: 111 QLKSVPDGIFDRLTSLQKI 129
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 56 ENSYFASIPSNV-GKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNE 114
E++ S+P V KL L L L+ NQ S F LT L+ L +NKL S+PN
Sbjct: 36 ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QSLPNG 94
Query: 115 IGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPM--LARLGLDFNHFKR 172
+ LT KELAL N L S+P + + + L ++ L N +
Sbjct: 95 V---------------FDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 138
Query: 173 TIPK 176
+ P+
Sbjct: 139 SCPR 142
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 298 IGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPK-ILEKLVQFSELD 356
G P L+ N+ +L + L +L L L +N+ +Q LP + +KL + + L
Sbjct: 24 TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILY 82
Query: 357 LSYNFLGPIPNSI 369
L N L +PN +
Sbjct: 83 LHENKLQSLPNGV 95
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 30 LSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFISYIP 88
L NQ S F L+NL +LYLY N S+P V KL +L L L+ NQ S
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLYLYHNQ-LQSLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
Query: 89 SSFGNLTNLSTSRLSKNKLFVSIPNEI 115
F LT L L+ N+L S+P+ +
Sbjct: 175 GVFDKLTQLKQLSLNDNQL-KSVPDGV 200
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 276 KLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCK 335
KL +L +L+L NQL L YL N+ +L + L L L L
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDN 166
Query: 336 NKLVQELPK-ILEKLVQFSELDLSYNFLGPIPNSIAFRGASV 376
N+L Q LP+ + +KL Q +L L+ N L +P+ + R S+
Sbjct: 167 NQL-QSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSL 207
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 30 LSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFISYIP 88
L+ NQ S F L+NL L L EN S+P V KL +L L L NQ S
Sbjct: 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLYLYHNQLQSLPK 150
Query: 89 SSFGNLTNLSTSRLSKNKL 107
F LTNL+ L N+L
Sbjct: 151 GVFDKLTNLTRLDLDNNQL 169
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 42 SFGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTS 100
+ L+NL +L L N S+P+ V KL +L +L L NQ S F LTNL+
Sbjct: 80 ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 101 RLSKNKLFVSIPNEI-GKMRSL-------NILEVLPLSV-SNLTNPKELALLYNCLSGSI 151
L N+L S+P + K+ +L N L+ LP V LT K+L+L N L S+
Sbjct: 139 YLYHNQL-QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SV 196
Query: 152 P 152
P
Sbjct: 197 P 197
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 229 CPKLGTL-GVLMNTITKG---IPREIRNSSQRQALDLSLNHIIGEIPKE--LGKLNSLIK 282
CP + G ++ +G IPR+I + L+ ++ +G I + G+L L+K
Sbjct: 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLN---DNELGRISSDGLFGRLPHLVK 58
Query: 283 LILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQEL 342
L L+RNQL G P ++ L N+ + + L +L L L N++ +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 343 PKILEKLVQFSELDLSYN 360
P E L + L+L+ N
Sbjct: 119 PGSFEHLNSLTSLNLASN 136
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 13/123 (10%)
Query: 172 RTIPKSLRSCTSLIRLCRNRNNLTRDISEAL-GIYPYLTFIDLSRNNFHGEIPSNREKCP 230
+ IP+ + T+ + L N N L R S+ L G P+L ++L RN G P+ E
Sbjct: 21 KEIPRDIPLHTTELLL--NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS 78
Query: 231 KLGTLGVLMNTITKGIPREIRNS-----SQRQALDLSLNHIIGEIPKELGKLNSLIKLIL 285
+ L + N I +EI N Q + L+L N I +P LNSL L L
Sbjct: 79 HIQELQLGENKI-----KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133
Query: 286 RRN 288
N
Sbjct: 134 ASN 136
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 28 LDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYI 87
L+L NQ + P +F S++ L L EN L L L L NQ +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 88 PSSFGNLTNLSTSRLSKN 105
P SF +L +L++ L+ N
Sbjct: 119 PGSFEHLNSLTSLNLASN 136
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 15 IPLNI-GNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNV-GKLKS 72
+P I + Q LW L+NNQ + P F +L NL LY N +IP+ V KL
Sbjct: 27 VPAGIPTDKQRLW---LNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQ 82
Query: 73 LGDLQLNGNQFISYIPSSFGNLTNLS 98
L L LN N S +F NL +L+
Sbjct: 83 LTQLDLNDNHLKSIPRGAFDNLKSLT 108
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 299 GSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLS 358
G P + + L + N+ L P ++L+ L L NKL + +KL Q ++LDL+
Sbjct: 30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
Query: 359 YNFLGPIPNSIAFRGA 374
N L IP RGA
Sbjct: 90 DNHLKSIP-----RGA 100
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 63 IPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSL- 121
I +N+ K L L LNGN ++ +P+ NL+NL LS N+L S+P E+G L
Sbjct: 239 ISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLK 296
Query: 122 ------NILEVLPLSVSNLTN 136
N++ LP NL N
Sbjct: 297 YFYFFDNMVTTLPWEFGNLCN 317
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 34/115 (29%)
Query: 240 NTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIG 299
N++T+ +P EI+N S + LDLS N + LP E+G
Sbjct: 257 NSLTE-LPAEIKNLSNLRVLDLSHNRLTS-------------------------LPAELG 290
Query: 300 SPIELEYLDFSVNRFNNLI---PESLENLLKLHYLGLCKNKLVQELPKIL-EKLV 350
S +L+Y F F+N++ P NL L +LG+ N L ++ KIL EK V
Sbjct: 291 SCFQLKYFYF----FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSV 341
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 84/202 (41%), Gaps = 16/202 (7%)
Query: 30 LSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYI-P 88
L N+ S SF + NL L+L+ N+ + L L L L+ N + + P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 89 SSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLT-----NPKELA-L 142
++F L +L T L + L P G R L L+ L L +NL ++L L
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGP---GLFRGLAALQYLYLQDNNLQALPDNTFRDLGNL 154
Query: 143 LYNCLSGSIPPSLENPM------LARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTR 196
+ L G+ PS+ L RL L NH R P + R L+ L NNL+
Sbjct: 155 THLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSM 214
Query: 197 DISEALGIYPYLTFIDLSRNNF 218
+E L L ++ L+ N +
Sbjct: 215 LPAEVLVPLRSLQYLRLNDNPW 236
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 34/164 (20%)
Query: 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNN-QFSSSIPLSFGNLSNL---------- 49
+ +L +H+N+L+G L LDLS+N Q P +F L +L
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 50 --------------IFLYLYENSYFASIPSNVGK-LKSLGDLQLNGNQFISYIPSSFGNL 94
+LYL +N+ ++P N + L +L L L+GN+ S +F L
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNN-LQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGL 175
Query: 95 TNLSTSRLSKNKLFVSIPN---EIGKMRSL----NILEVLPLSV 131
+L L +N + P+ ++G++ +L N L +LP V
Sbjct: 176 HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEV 219
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 86/204 (42%), Gaps = 14/204 (6%)
Query: 2 ALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFA 61
LL + NN +S + Q L+ L L NN+ S +F L L LY+ +N +
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLV 115
Query: 62 SIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSL 121
IP N+ SL +L+++ N+ F L N++ + N L S E G L
Sbjct: 116 EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-GFEPGAFDGL 172
Query: 122 NILEVLPLSVSNLTN-PK-------ELALLYNCLSG-SIPPSLENPMLARLGLDFNHFKR 172
L L +S + LT PK EL L +N + + L L RLGL N +
Sbjct: 173 K-LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231
Query: 173 TIPKSLRSCTSLIRLCRNRNNLTR 196
SL +L L + N L+R
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSR 255
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 24/107 (22%)
Query: 28 LDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYI 87
LDLS+N SS FG LS+L +L L N Y ++LG +
Sbjct: 105 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY-----------QTLG------------V 141
Query: 88 PSSFGNLTNLSTSRLSKNKLFVSIPN-EIGKMRSLNILEVLPLSVSN 133
S F NLTNL T R+ + F I + + SLN LE+ LS+ N
Sbjct: 142 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 188
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 299 GSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLS 358
G P + L +N+ L P ++L +L YL L N+L + +KL + + L L
Sbjct: 37 GIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALH 96
Query: 359 YNFLGPIP 366
N L IP
Sbjct: 97 INQLKSIP 104
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 24/107 (22%)
Query: 28 LDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYI 87
LDLS+N SS FG LS+L +L L N Y ++LG +
Sbjct: 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY-----------QTLG------------V 115
Query: 88 PSSFGNLTNLSTSRLSKNKLFVSIPN-EIGKMRSLNILEVLPLSVSN 133
S F NLTNL T R+ + F I + + SLN LE+ LS+ N
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 281 IKLILRRNQLVGCLPTEIGSPIE-LEYLDFSVNRFNNLIPESLENLL------KLHYLGL 333
+K I N V +P ++ LE+LD S N ++ E L+N L L L
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL---MVEEYLKNSACKGAWPSLQTLVL 368
Query: 334 CKNKL--VQELPKILEKLVQFSELDLSYNFLGPIPNSIAF 371
+N L +Q+ +IL L + LD+S N P+P+S +
Sbjct: 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW 408
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 79/200 (39%), Gaps = 12/200 (6%)
Query: 30 LSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGN-QFISYIP 88
L N+ S SF NL L+L+ N + L L L L+ N Q S P
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 89 SSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSL-------NILEVLPLSV-SNLTNPKEL 140
++F L L T L + L P + +L N L+ LP +L N L
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 157
Query: 141 ALLYNCLSGSIPPSLENPM--LARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDI 198
L N +S S+P + L RL L N P + R L+ L NNL+
Sbjct: 158 FLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 199 SEALGIYPYLTFIDLSRNNF 218
+EAL L ++ L+ N +
Sbjct: 217 TEALAPLRALQYLRLNDNPW 236
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 4 LIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASI 63
L +H N +S L L L N+ + P +F +L L+ LYL+ N+ A
Sbjct: 157 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 216
Query: 64 PSNVGKLKSLGDLQLNGNQFI 84
+ L++L L+LN N ++
Sbjct: 217 TEALAPLRALQYLRLNDNPWV 237
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 79/200 (39%), Gaps = 12/200 (6%)
Query: 30 LSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGN-QFISYIP 88
L N+ S SF NL L+L+ N + L L L L+ N Q S P
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 89 SSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSL-------NILEVLPLSV-SNLTNPKEL 140
++F L L T L + L P + +L N L+ LP +L N L
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158
Query: 141 ALLYNCLSGSIPPSLENPM--LARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDI 198
L N +S S+P + L RL L N P + R L+ L NNL+
Sbjct: 159 FLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 199 SEALGIYPYLTFIDLSRNNF 218
+EAL L ++ L+ N +
Sbjct: 218 TEALAPLRALQYLRLNDNPW 237
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 4 LIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASI 63
L +H N +S L L L N+ + P +F +L L+ LYL+ N+ A
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217
Query: 64 PSNVGKLKSLGDLQLNGNQFI 84
+ L++L L+LN N ++
Sbjct: 218 TEALAPLRALQYLRLNDNPWV 238
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 294 LPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFS 353
+PT I + ++ YL NR L P + L +L L L N+L + +KL Q +
Sbjct: 24 VPTGIPTTTQVLYL--YDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81
Query: 354 ELDLSYNFLGPIPNSIAFRGA 374
+L L+ N L IP RGA
Sbjct: 82 QLSLNDNQLKSIP-----RGA 97
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 37 SSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTN 96
+S+P + + LYLY+N P +L L L L+ NQ F LT
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 97 LSTSRLSKNKLFVSIP-NEIGKMRSLNILEVL 127
L+ L+ N+L SIP +RSL + +L
Sbjct: 80 LTQLSLNDNQL-KSIPRGAFDNLRSLTHIWLL 110
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 30 LSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFISYIP 88
L +N+ + P F L+ L L L +N+ +P+ V KL L L LN NQ S
Sbjct: 37 LYDNRITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 95
Query: 89 SSFGNLTNLS 98
+F NL +L+
Sbjct: 96 GAFDNLRSLT 105
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 51/127 (40%), Gaps = 9/127 (7%)
Query: 28 LDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYI 87
+DLS N SF N S L +L L L L +L L GN S+
Sbjct: 32 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 88 PSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEV---------LPLSVSNLTNPK 138
P SF LT+L + KL IG++ +L L V LP SNLTN
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 139 ELALLYN 145
+ L YN
Sbjct: 152 HVDLSYN 158
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
Query: 252 NSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSV 311
N S+ Q LDLS I K L+ L LIL N + P LE L
Sbjct: 49 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 108
Query: 312 NRFNNLIPESLENLLKLHYLGLCKNKLVQ-ELPKILEKLVQFSELDLSYNFLGPI 365
+ +L + L+ L L + N + +LP L +DLSYN++ I
Sbjct: 109 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 163
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 51/127 (40%), Gaps = 9/127 (7%)
Query: 28 LDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYI 87
+DLS N SF N S L +L L L L +L L GN S+
Sbjct: 37 IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 88 PSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEV---------LPLSVSNLTNPK 138
P SF LT+L + KL IG++ +L L V LP SNLTN
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 139 ELALLYN 145
+ L YN
Sbjct: 157 HVDLSYN 163
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
Query: 252 NSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSV 311
N S+ Q LDLS I K L+ L LIL N + P LE L
Sbjct: 54 NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113
Query: 312 NRFNNLIPESLENLLKLHYLGLCKNKLVQ-ELPKILEKLVQFSELDLSYNFLGPI 365
+ +L + L+ L L + N + +LP L +DLSYN++ I
Sbjct: 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 261 LSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPE 320
L L HI ++P + LN L NQL PT +L LD N + L PE
Sbjct: 14 LKLTHIPDDLPSNITVLN------LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE 67
Query: 321 SLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPI 365
+ L L L L N+L Q + +ELDL N + I
Sbjct: 68 LCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKI 112
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 31/122 (25%)
Query: 246 IPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELE 305
+P+++ S + L++S N+I ++ L+ L LI+ N++ +
Sbjct: 15 VPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--------------Q 58
Query: 306 YLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKI-LEKLVQFSELDLSYNFLGP 364
YLD SV +FN +L YL L NKLV KI V LDLS+N
Sbjct: 59 YLDISVFKFNQ----------ELEYLDLSHNKLV----KISCHPTVNLKHLDLSFNAFDA 104
Query: 365 IP 366
+P
Sbjct: 105 LP 106
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 32/149 (21%)
Query: 259 LDLSLNHIIGEIPKELGKLNSLIKLILRRNQL-----VGCLPTEIGSPIELEYLD----- 308
LD S N + + + G L L LIL+ NQL + + T++ S L+ LD
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS---LQQLDISQNS 385
Query: 309 ----------------FSVNRFNNLIPESLENLL--KLHYLGLCKNKLVQELPKILEKLV 350
S+N +N++ +++ L ++ L L NK ++ +PK + KL
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLE 444
Query: 351 QFSELDLSYNFLGPIPNSIAFRGASVEAL 379
EL+++ N L +P+ I R S++ +
Sbjct: 445 ALQELNVASNQLKSVPDGIFDRLTSLQKI 473
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 62 SIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIP 112
SIP V KL++L +L + NQ S F LT+L L N S P
Sbjct: 435 SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 294 LPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFS 353
+PT I + ++ YL N+ L P + L +L L L N+L + +KL Q +
Sbjct: 32 VPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 89
Query: 354 ELDLSYNFLGPIPNSIAFRGA 374
+L L+ N L IP RGA
Sbjct: 90 QLSLNDNQLKSIP-----RGA 105
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 30 LSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFISYIP 88
L +NQ + P F L+ L L L +N+ +P+ V KL L L LN NQ S
Sbjct: 45 LYDNQITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 103
Query: 89 SSFGNLTNLS 98
+F NL +L+
Sbjct: 104 GAFDNLKSLT 113
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 37 SSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTN 96
+S+P + + LYLY+N P +L L L L+ NQ F LT
Sbjct: 30 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 97 LSTSRLSKNKLFVSIP 112
L+ L+ N+L SIP
Sbjct: 88 LTQLSLNDNQL-KSIP 102
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 294 LPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFS 353
+PT I + ++ YL N+ L P + L +L L L N+L + +KL Q +
Sbjct: 24 VPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81
Query: 354 ELDLSYNFLGPIPNSIAFRGA 374
+L L+ N L IP RGA
Sbjct: 82 QLSLNDNQLKSIP-----RGA 97
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 30 LSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNV-GKLKSLGDLQLNGNQFISYIP 88
L +NQ + P F L+ L L L +N+ +P+ V KL L L LN NQ S
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDL-DNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 95
Query: 89 SSFGNLTNLS 98
+F NL +L+
Sbjct: 96 GAFDNLKSLT 105
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 37 SSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTN 96
+S+P + + LYLY+N P +L L L L+ NQ F LT
Sbjct: 22 ASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 97 LSTSRLSKNKLFVSIP 112
L+ L+ N+L SIP
Sbjct: 80 LTQLSLNDNQL-KSIP 94
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 96/222 (43%), Gaps = 60/222 (27%)
Query: 4 LIIHNNSLSGFIPLNI----------GNS----------QFLWGLDLSNNQFSSSIPLSF 43
LI NN +S PL I GN L LDL+NNQ S+ PLS
Sbjct: 200 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS- 258
Query: 44 GNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQF-----------ISYIPSSFG 92
L+ L L L N P + L +L +L+LN NQ ++Y+ F
Sbjct: 259 -GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 315
Query: 93 NLTNLS-TSRLSK-NKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGS 150
N++++S S L+K +LF S N++ + SL +NLTN L+ +N +S
Sbjct: 316 NISDISPVSSLTKLQRLFFS-NNKVSDVSSL----------ANLTNINWLSAGHNQISDL 364
Query: 151 IPPSLEN-PMLARLGLDFNHFKR---------TIPKSLRSCT 182
P L N + +LGL+ + +IP ++++ T
Sbjct: 365 TP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 79/182 (43%), Gaps = 48/182 (26%)
Query: 4 LIIHNNSLSGFIPLNI----------GNS----------QFLWGLDLSNNQFSSSIPLSF 43
LI NN +S PL I GN L LDL+NNQ S+ PLS
Sbjct: 199 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS- 257
Query: 44 GNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQF-----------ISYIPSSFG 92
L+ L L L N P + L +L +L+LN NQ ++Y+ F
Sbjct: 258 -GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 314
Query: 93 NLTNLS-TSRLSK-NKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGS 150
N++++S S L+K +LF S N++ + SL +NLTN L+ +N +S
Sbjct: 315 NISDISPVSSLTKLQRLFFS-NNKVSDVSSL----------ANLTNINWLSAGHNQISDL 363
Query: 151 IP 152
P
Sbjct: 364 TP 365
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 42 SFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISY-IPSSFGNLTNLSTS 100
+F LS+L L E + + +G LK+L +L + N S+ +P F NLTNL
Sbjct: 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154
Query: 101 RLSKNKL 107
LS NK+
Sbjct: 155 DLSSNKI 161
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 42 SFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISY-IPSSFGNLTNLSTS 100
+F LS+L L E + + +G LK+L +L + N S+ +P F NLTNL
Sbjct: 97 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 156
Query: 101 RLSKNKL 107
LS NK+
Sbjct: 157 DLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 42 SFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISY-IPSSFGNLTNLSTS 100
+F LS+L L E + + +G LK+L +L + N S+ +P F NLTNL
Sbjct: 96 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 101 RLSKNKL 107
LS NK+
Sbjct: 156 DLSSNKI 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 42 SFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISY-IPSSFGNLTNLSTS 100
+F LS+L L E + + +G LK+L +L + N S+ +P F NLTNL
Sbjct: 96 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 155
Query: 101 RLSKNKL 107
LS NK+
Sbjct: 156 DLSSNKI 162
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 46/181 (25%)
Query: 4 LIIHNNSLSGFIPLNI----------GNS----------QFLWGLDLSNNQFSSSIPLSF 43
LI NN +S PL I GN L LDL+NNQ S+ PLS
Sbjct: 203 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS- 261
Query: 44 GNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQF-----------ISYIPSSFG 92
L+ L L L N P + L +L +L+LN NQ ++Y+ F
Sbjct: 262 -GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 318
Query: 93 NLTNLS-TSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSI 151
N++++S S L+K + N++ + SL +NLTN L+ +N +S
Sbjct: 319 NISDISPVSSLTKLQRLFFANNKVSDVSSL----------ANLTNINWLSAGHNQISDLT 368
Query: 152 P 152
P
Sbjct: 369 P 369
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 93/221 (42%), Gaps = 58/221 (26%)
Query: 4 LIIHNNSLSGFIPLNI----------GNS----------QFLWGLDLSNNQFSSSIPLSF 43
LI NN +S PL I GN L LDL+NNQ S+ PLS
Sbjct: 200 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS- 258
Query: 44 GNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQF-----------ISYIPSSFG 92
L+ L L L N P + L +L +L+LN NQ ++Y+ F
Sbjct: 259 -GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 315
Query: 93 NLTNLS-TSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSI 151
N++++S S L+K + N++ + SL +NLTN L+ +N +S
Sbjct: 316 NISDISPVSSLTKLQRLFFYNNKVSDVSSL----------ANLTNINWLSAGHNQISDLT 365
Query: 152 PPSLEN-PMLARLGLDFNHFKR---------TIPKSLRSCT 182
P L N + +LGL+ + +IP ++++ T
Sbjct: 366 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVT 404
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 46/181 (25%)
Query: 4 LIIHNNSLSGFIPLNI----------GNS----------QFLWGLDLSNNQFSSSIPLSF 43
LI NN +S PL I GN L LDL+NNQ S+ PLS
Sbjct: 200 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS- 258
Query: 44 GNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQF-----------ISYIPSSFG 92
L+ L L L N P + L +L +L+LN NQ ++Y+ F
Sbjct: 259 -GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 315
Query: 93 NLTNLS-TSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSI 151
N++++S S L+K + N++ + SL +NLTN L+ +N +S
Sbjct: 316 NISDISPVSSLTKLQRLFFYNNKVSDVSSL----------ANLTNINWLSAGHNQISDLT 365
Query: 152 P 152
P
Sbjct: 366 P 366
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 42 SFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISY-IPSSFGNLTNLSTS 100
+F LS+L L E + + +G LK+L +L + N S+ +P F NLTNL
Sbjct: 97 AFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 156
Query: 101 RLSKNKL 107
LS NK+
Sbjct: 157 DLSSNKI 163
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 67 VGKLKSLGDLQLNGNQFISY-IPSSFGNLTNLSTSRLSKNKL 107
+G LK+L +L + N S+ +P F NLTNL LS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 43 FGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFIS-YIPSSFGNLTNLSTSR 101
F +L NLI+L + + L SL L++ GN F ++P F L NL+
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 102 LSKNKLFVSIPNEIGKMRSLNILEV 126
LS+ +L P + SL +L +
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNM 501
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 67 VGKLKSLGDLQLNGNQFISY-IPSSFGNLTNLSTSRLSKNKL 107
+G LK+L +L + N S+ +P F NLTNL LS NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 43 FGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFIS-YIPSSFGNLTNLSTSR 101
F +L NLI+L + + L SL L++ GN F ++P F L NL+
Sbjct: 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500
Query: 102 LSKNKLFVSIPNEIGKMRSLNILEV 126
LS+ +L P + SL +L +
Sbjct: 501 LSQCQLEQLSPTAFNSLSSLQVLNM 525
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 28 LDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYI 87
L+LS+N + S+ F L + + N+ SIP +V L++L +L + NQ S
Sbjct: 433 LNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVP 489
Query: 88 PSSFGNLTNLSTSRLSKNKLFVSIP 112
F LT+L L N + P
Sbjct: 490 DGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 46/181 (25%)
Query: 4 LIIHNNSLSGFIPLNI----------GNS----------QFLWGLDLSNNQFSSSIPLSF 43
LI NN +S PL I GN L LDL+NNQ S+ PLS
Sbjct: 204 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS- 262
Query: 44 GNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQF-----------ISYIPSSFG 92
L+ L L L N P + L +L +L+LN NQ ++Y+ F
Sbjct: 263 -GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 319
Query: 93 NLTNLS-TSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSI 151
N++++S S L+K + N++ + SL +NLTN L+ +N +S
Sbjct: 320 NISDISPVSSLTKLQRLFFYNNKVSDVSSL----------ANLTNINWLSAGHNQISDLT 369
Query: 152 P 152
P
Sbjct: 370 P 370
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 45/102 (44%)
Query: 25 LWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFI 84
L +DLSNNQ S P +F L +L L LY N S L SL L LN N+
Sbjct: 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
Query: 85 SYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEV 126
+F +L NL+ L NKL +R++ + +
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 46/181 (25%)
Query: 4 LIIHNNSLSGFIPLNI----------GNS----------QFLWGLDLSNNQFSSSIPLSF 43
LI NN +S PL I GN L LDL+NNQ S+ PLS
Sbjct: 199 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS- 257
Query: 44 GNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQF-----------ISYIPSSFG 92
L+ L L L N P + L +L +L+LN NQ ++Y+ F
Sbjct: 258 -GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 314
Query: 93 NLTNLS-TSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSI 151
N++++S S L+K + N++ + SL +NLTN L+ +N +S
Sbjct: 315 NISDISPVSSLTKLQRLFFYNNKVSDVSSL----------ANLTNINWLSAGHNQISDLT 364
Query: 152 P 152
P
Sbjct: 365 P 365
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 45/102 (44%)
Query: 25 LWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFI 84
L +DLSNNQ S P +F L +L L LY N S L SL L LN N+
Sbjct: 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
Query: 85 SYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEV 126
+F +L NL+ L NKL +R++ + +
Sbjct: 118 XLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 67 VGKLKSLGDLQLNGNQFISY-IPSSFGNLTNLSTSRLSKNKL 107
+G LK+L +L + N S+ +P F NLTNL LS NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 7/179 (3%)
Query: 206 PYLTFIDLSRN--NFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSL 263
P L F+DLSRN +F G + L L + N + + Q + LD
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 405
Query: 264 NHI--IGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFN-NLIPE 320
+++ + E L L +LI L + LE L + N F N +P+
Sbjct: 406 SNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 321 SLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNSIAFRGASVEAL 379
L L +L L + +L Q P L L+++ N L +P+ I R S++ +
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 43 FGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFIS-YIPSSFGNLTNLSTSR 101
F +L NLI+L + + L SL L++ GN F ++P F L NL+
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 102 LSKNKLFVSIPNEIGKMRSLNILEV 126
LS+ +L P + SL +L +
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNM 501
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 56/148 (37%), Gaps = 24/148 (16%)
Query: 200 EALGIYPYLTFIDLSRNNFHGEIPSNREKCP-KLGTLGVL------MNTITKGIPREIRN 252
E + ++P L+ +DLS N GE CP K TL VL M T +
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226
Query: 253 SSQRQALDLSLNHIIG-------EIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELE 305
Q Q LDLS N + + P +L LN G G P +L
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL---------SFTGLKQVPKGLPAKLS 277
Query: 306 YLDFSVNRFN-NLIPESLENLLKLHYLG 332
LD S NR + N P+ L + L G
Sbjct: 278 VLDLSYNRLDRNPSPDELPQVGNLSLKG 305
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 26/105 (24%)
Query: 257 QALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNN 316
Q LDL+ H+ E+P L L++L KL+L S N+F N
Sbjct: 281 QELDLTATHL-SELPSGLVGLSTLKKLVL------------------------SANKFEN 315
Query: 317 LIPESLENLLKLHYLGLCKNKLVQEL-PKILEKLVQFSELDLSYN 360
L S N L +L + N EL LE L ELDLS++
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 74/166 (44%), Gaps = 29/166 (17%)
Query: 182 TSLIRLCRNRNNLTR-DISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMN 240
T L L + N LT+ D+S+ P LT+++ +RN EI + +L L +N
Sbjct: 106 TKLTYLNCDTNKLTKLDVSQN----PLLTYLNCARNTL-TEIDVSHNT--QLTELDCHLN 158
Query: 241 TITKGIPR-EIRNSSQRQALDLSLNHIIGEIPKELGKL--------NSLIKLILRRN--- 288
K I + ++ +Q LD S N I E+ KL N++ KL L +N
Sbjct: 159 ---KKITKLDVTPQTQLTTLDCSFNKIT-ELDVSQNKLLNRLNCDTNNITKLDLNQNIQL 214
Query: 289 QLVGCLP---TEIG-SPI-ELEYLDFSVNRFNNLIPESLENLLKLH 329
+ C TEI +P+ +L Y D SVN L +L L LH
Sbjct: 215 TFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLH 260
>pdb|2B94|A Chain A, Structural Analysis Of P Knowlesi Homolog Of P Falciparum
Pnp
Length = 267
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Query: 299 GSPIELEYLDFSVNRFNNLIPESLENLLKL 328
G P++ + DF NNL+PE LEN++K+
Sbjct: 230 GCPLKWDEGDFD----NNLVPEKLENMIKI 255
>pdb|2FNA|A Chain A, Crystal Structure Of An Archaeal Aaa+ Atpase (Sso1545)
From Sulfolobus Solfataricus P2 At 2.00 A Resolution
pdb|2FNA|B Chain B, Crystal Structure Of An Archaeal Aaa+ Atpase (Sso1545)
From Sulfolobus Solfataricus P2 At 2.00 A Resolution
Length = 357
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 16/118 (13%)
Query: 57 NSYFASIPSNVGKLKSLGDLQLNGNQ----FISYIPSSFGNLTNLSTSRLSKNKLFVSI- 111
N +PS + LK++ + + GN+ + SF NL S + SK+ + + +
Sbjct: 86 NKLVKRLPSLLKALKNIQGIVIXGNEIKFNWNRKDRLSFANLLE-SFEQASKDNVIIVLD 144
Query: 112 -PNEIGKMRSLNILEVLPLSVSNLTNPK------ELALLYNCLSGSIPPSLENPMLAR 162
E+ K+R +N+L L + NL K E LLY+ L P E+P+ R
Sbjct: 145 EAQELVKLRGVNLLPALAYAYDNLKRIKFIXSGSEXGLLYDYLRVEDP---ESPLFGR 199
>pdb|3EMV|A Chain A, Crystal Structure Of Plasmodium Vivax Pnp With Sulphate
Length = 253
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
Query: 299 GSPIELEYLDFSVNRFNNLIPESLENLLKL 328
G P++ + DF NNL+PE LEN++K+
Sbjct: 208 GCPLKWDEGDFD----NNLVPERLENMIKI 233
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 4 LIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASI 63
L I N+ LS P I + L LDL + P FG + L L L + S ++
Sbjct: 211 LKIRNSPLSALGPA-IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269
Query: 64 PSNVGKLKSLGDLQLNGNQFISYIPSSFGNL 94
P ++ +L L L L G +S +PS L
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 28 LDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYI 87
LDL N+ + F + +L L L EN A P L +L L L N+ + I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLI 95
Query: 88 P-SSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEV 126
P F L+NL+ +S+NK+ + + + +L LEV
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 43 FGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFIS-YIPSSFGNLTNLSTSR 101
F +L NLI+L + + L SL L++ GN F ++P F L NL+
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181
Query: 102 LSKNKLFVSIPNEIGKMRSLNILEV 126
LS+ +L P + SL +L +
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNM 206
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 239 MNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEI 298
+N+I G+ ++ +LDLS N I +L + +L L+L N +
Sbjct: 43 LNSIPSGLTEAVK------SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96
Query: 299 GSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKN 336
S LE+LD S N +NL + L L +L L N
Sbjct: 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%)
Query: 285 LRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPK 344
L ++++ L + +LE L + N N + + L L L L +N L +
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSR 341
Query: 345 ILEKLVQFSELDLSYNFL 362
+ E L + LDLSYN +
Sbjct: 342 MFENLDKLEVLDLSYNHI 359
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 304 LEY-LDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLV---QFSELDL 357
+EY L + ++ N+ E+ E L L +CK+ LV+ LPK++ LV ++S++D+
Sbjct: 258 VEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDI 315
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 304 LEY-LDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLV---QFSELDL 357
+EY L + ++ N+ E+ E L L +CK+ LV+ LPK++ LV ++S++D+
Sbjct: 258 VEYXLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGXKYSDIDI 315
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 304 LEY-LDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLV---QFSELDL 357
+EY L + ++ N+ E+ E L L +CK+ LV+ LPK++ LV ++S++D+
Sbjct: 258 VEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDI 315
>pdb|3BFJ|A Chain A, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|B Chain B, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|C Chain C, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|D Chain D, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|E Chain E, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|F Chain F, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|G Chain G, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|H Chain H, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|I Chain I, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|J Chain J, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|K Chain K, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|L Chain L, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|M Chain M, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|N Chain N, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|O Chain O, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|P Chain P, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|Q Chain Q, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|R Chain R, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|S Chain S, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
pdb|3BFJ|T Chain T, Crystal Structure Analysis Of 1,3-Propanediol
Oxidoreductase
Length = 387
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 352 FSELDLSYNFLGPIPNSIAFRGASVEALKGNKRLCVSAKGLQPCK 396
F L + NF GP N+I+ G + L G K L V+ KGL+ K
Sbjct: 6 FDYLVPNVNFFGP--NAISVVGERCQLLGGKKALLVTDKGLRAIK 48
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 304 LEY-LDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLV---QFSELDL 357
+EY L + ++ N+ E+ E L L +CK+ LV+ LPK++ LV ++S++D+
Sbjct: 258 VEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDI 315
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,748,654
Number of Sequences: 62578
Number of extensions: 557698
Number of successful extensions: 1820
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1290
Number of HSP's gapped (non-prelim): 371
length of query: 495
length of database: 14,973,337
effective HSP length: 103
effective length of query: 392
effective length of database: 8,527,803
effective search space: 3342898776
effective search space used: 3342898776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)