Query 041558
Match_columns 495
No_of_seqs 541 out of 4655
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 14:07:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.2E-56 3.2E-60 470.1 31.0 397 1-399 271-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.9E-50 2E-54 425.5 30.2 383 1-385 225-717 (768)
3 4eco_A Uncharacterized protein 100.0 3.4E-48 1.2E-52 402.8 25.7 381 1-389 83-604 (636)
4 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-46 7.9E-51 389.1 30.1 386 1-388 34-561 (606)
5 3t6q_A CD180 antigen; protein- 100.0 1.6E-45 5.3E-50 382.9 33.1 361 1-362 59-512 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 9.5E-46 3.3E-50 397.1 26.7 383 1-387 26-562 (844)
7 4ecn_A Leucine-rich repeat pro 100.0 1.2E-45 4E-50 390.1 26.7 376 2-386 326-841 (876)
8 3t6q_A CD180 antigen; protein- 100.0 8.8E-45 3E-49 377.2 31.3 363 1-364 35-490 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 8.6E-45 3E-49 377.3 30.0 367 1-371 58-566 (606)
10 4eco_A Uncharacterized protein 100.0 1E-45 3.5E-50 384.3 22.3 346 10-366 194-603 (636)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.2E-44 7.4E-49 386.6 25.4 365 1-370 50-567 (844)
12 1ziw_A TOLL-like receptor 3; i 100.0 5.4E-43 1.8E-47 368.6 34.3 387 1-387 99-624 (680)
13 2z63_A TOLL-like receptor 4, v 100.0 6.4E-44 2.2E-48 368.2 26.7 383 1-386 30-532 (570)
14 1ziw_A TOLL-like receptor 3; i 100.0 6.4E-43 2.2E-47 368.0 34.7 372 1-372 224-632 (680)
15 3v47_A TOLL-like receptor 5B a 100.0 1.2E-43 4.1E-48 355.8 26.2 363 4-370 15-416 (455)
16 2z63_A TOLL-like receptor 4, v 100.0 1.9E-43 6.6E-48 364.6 27.1 364 1-368 54-537 (570)
17 4ecn_A Leucine-rich repeat pro 100.0 9.1E-44 3.1E-48 375.7 24.2 346 9-366 435-843 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 5.4E-43 1.8E-47 357.0 24.7 354 2-366 3-484 (520)
19 4g8a_A TOLL-like receptor 4; l 100.0 4.8E-41 1.6E-45 351.2 32.5 390 1-392 54-613 (635)
20 2z81_A CD282 antigen, TOLL-lik 100.0 3.6E-42 1.2E-46 353.4 20.5 375 1-386 28-511 (549)
21 3v47_A TOLL-like receptor 5B a 100.0 3E-41 1E-45 338.3 24.5 360 25-388 12-411 (455)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.5E-41 1.5E-45 345.6 26.4 356 2-368 34-515 (562)
23 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-41 4.5E-46 349.2 18.2 355 1-366 52-514 (549)
24 2id5_A Lingo-1, leucine rich r 100.0 1.5E-40 5.2E-45 335.1 24.0 320 3-341 15-335 (477)
25 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-39 3.9E-44 332.4 24.7 347 26-386 3-482 (520)
26 1o6v_A Internalin A; bacterial 100.0 8E-39 2.7E-43 321.1 27.9 340 1-368 48-393 (466)
27 4g8a_A TOLL-like receptor 4; l 100.0 1.9E-37 6.6E-42 323.9 32.5 375 9-386 41-581 (635)
28 2id5_A Lingo-1, leucine rich r 100.0 3.1E-38 1.1E-42 318.2 25.3 301 1-317 34-335 (477)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.1E-38 1.7E-42 322.9 25.9 353 21-386 29-511 (562)
30 3o6n_A APL1; leucine-rich repe 100.0 3.9E-37 1.3E-41 301.8 25.3 334 21-388 43-377 (390)
31 3oja_B Anopheles plasmodium-re 100.0 5.4E-37 1.9E-41 316.9 25.0 335 21-389 49-384 (597)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-36 5.6E-41 301.9 25.2 320 1-368 44-393 (457)
33 1jl5_A Outer protein YOPM; leu 100.0 2.2E-36 7.6E-41 300.7 23.1 321 1-362 13-369 (454)
34 3o6n_A APL1; leucine-rich repe 100.0 4.6E-36 1.6E-40 294.2 23.7 308 1-341 47-354 (390)
35 1o6v_A Internalin A; bacterial 100.0 2E-35 6.8E-40 296.4 27.7 340 20-386 43-389 (466)
36 4fmz_A Internalin; leucine ric 100.0 2.5E-35 8.5E-40 284.5 25.3 306 19-363 40-346 (347)
37 4fmz_A Internalin; leucine ric 100.0 3.4E-35 1.1E-39 283.6 24.2 300 1-339 46-346 (347)
38 3bz5_A Internalin-J, INLJ; leu 100.0 5.9E-35 2E-39 290.8 25.9 311 11-367 30-356 (457)
39 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-35 8.5E-40 279.5 20.5 248 23-289 50-302 (313)
40 2ft3_A Biglycan; proteoglycan, 100.0 3.1E-34 1.1E-38 274.8 24.9 288 24-361 34-331 (332)
41 1xku_A Decorin; proteoglycan, 100.0 1.2E-33 4E-38 270.6 26.9 289 24-361 32-330 (330)
42 1ogq_A PGIP-2, polygalacturona 100.0 7.1E-35 2.4E-39 276.3 17.3 231 158-390 76-309 (313)
43 3oja_B Anopheles plasmodium-re 100.0 7.6E-34 2.6E-38 293.4 24.0 311 45-387 49-360 (597)
44 1xku_A Decorin; proteoglycan, 100.0 5.6E-33 1.9E-37 265.9 26.3 290 1-337 33-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 3.7E-33 1.3E-37 267.3 24.9 289 1-337 35-331 (332)
46 1jl5_A Outer protein YOPM; leu 100.0 6.8E-33 2.3E-37 275.6 25.3 333 16-386 5-371 (454)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-36 5.4E-41 304.6 -5.6 352 1-363 5-411 (461)
48 3oja_A Leucine-rich immune mol 100.0 1E-33 3.6E-38 284.2 5.4 149 206-358 120-270 (487)
49 1z7x_W Ribonuclease inhibitor; 100.0 4E-35 1.4E-39 294.3 -5.5 350 1-362 30-439 (461)
50 2z80_A TOLL-like receptor 2, v 100.0 4.2E-31 1.4E-35 255.2 16.2 283 18-362 26-313 (353)
51 2z66_A Variable lymphocyte rec 100.0 1.5E-30 5.1E-35 246.3 17.1 278 27-324 11-296 (306)
52 2z66_A Variable lymphocyte rec 100.0 3.3E-30 1.1E-34 244.0 18.8 279 3-300 11-296 (306)
53 4fcg_A Uncharacterized protein 100.0 3.8E-30 1.3E-34 245.2 17.6 88 23-113 81-168 (328)
54 2z80_A TOLL-like receptor 2, v 100.0 2.5E-30 8.4E-35 249.9 14.3 279 43-387 27-316 (353)
55 3zyi_A Leucine-rich repeat-con 100.0 3.5E-29 1.2E-33 250.0 21.2 254 73-370 56-310 (452)
56 1ozn_A Reticulon 4 receptor; N 100.0 2.1E-29 7.2E-34 235.8 18.3 252 4-299 16-269 (285)
57 3zyj_A Leucine-rich repeat-con 100.0 3.7E-29 1.3E-33 248.9 20.9 255 72-370 44-299 (440)
58 3zyi_A Leucine-rich repeat-con 100.0 1.4E-28 4.7E-33 245.7 24.6 247 24-314 55-302 (452)
59 1ozn_A Reticulon 4 receptor; N 100.0 3.3E-29 1.1E-33 234.5 18.6 228 138-367 14-242 (285)
60 3zyj_A Leucine-rich repeat-con 100.0 1.8E-28 6E-33 244.0 24.5 247 24-338 44-291 (440)
61 4fcg_A Uncharacterized protein 100.0 3.3E-29 1.1E-33 238.8 17.5 205 158-366 104-317 (328)
62 3g06_A SSPH2 (leucine-rich rep 100.0 1.9E-27 6.6E-32 243.5 26.6 268 24-350 41-308 (622)
63 3o53_A Protein LRIM1, AGAP0063 100.0 1.9E-30 6.5E-35 246.6 3.1 257 26-335 13-271 (317)
64 3o53_A Protein LRIM1, AGAP0063 100.0 3.3E-30 1.1E-34 244.9 4.7 254 4-310 15-270 (317)
65 3ogk_B Coronatine-insensitive 100.0 3.7E-31 1.3E-35 274.0 -3.8 361 1-363 114-526 (592)
66 1wwl_A Monocyte differentiatio 100.0 1.5E-29 5.2E-34 239.7 7.5 154 158-316 149-310 (312)
67 1wwl_A Monocyte differentiatio 100.0 1.2E-29 4E-34 240.5 5.4 251 43-340 39-310 (312)
68 3oja_A Leucine-rich immune mol 99.9 2.2E-28 7.6E-33 245.5 9.0 237 46-334 33-270 (487)
69 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-25 4.3E-30 230.0 28.6 261 47-366 40-301 (622)
70 3ogk_B Coronatine-insensitive 99.9 1.6E-29 5.4E-34 261.8 -2.4 382 1-383 75-524 (592)
71 2z62_A TOLL-like receptor 4, v 99.9 4.6E-26 1.6E-30 212.1 17.2 208 158-366 28-240 (276)
72 2o6q_A Variable lymphocyte rec 99.9 4E-25 1.4E-29 204.8 21.0 206 159-367 17-222 (270)
73 2p1m_B Transport inhibitor res 99.9 7.5E-29 2.6E-33 256.8 -6.0 359 1-362 107-518 (594)
74 2z62_A TOLL-like receptor 4, v 99.9 3.6E-25 1.2E-29 206.0 18.1 207 136-343 29-241 (276)
75 2o6q_A Variable lymphocyte rec 99.9 1.6E-24 5.6E-29 200.7 21.3 204 136-341 17-220 (270)
76 1p9a_G Platelet glycoprotein I 99.9 2.3E-24 7.7E-29 201.5 18.5 206 131-366 6-211 (290)
77 3rfs_A Internalin B, repeat mo 99.9 8.5E-25 2.9E-29 202.8 14.5 229 22-302 18-246 (272)
78 1p9a_G Platelet glycoprotein I 99.9 7.4E-24 2.5E-28 198.0 20.2 202 90-314 5-207 (290)
79 3rfs_A Internalin B, repeat mo 99.9 1.6E-24 5.5E-29 201.0 14.9 231 45-327 17-247 (272)
80 3goz_A Leucine-rich repeat-con 99.9 4.9E-26 1.7E-30 220.3 2.1 229 3-243 2-266 (362)
81 2p1m_B Transport inhibitor res 99.9 2.1E-27 7.3E-32 245.9 -10.6 358 1-361 132-542 (594)
82 2xwt_C Thyrotropin receptor; s 99.9 1E-23 3.5E-28 191.7 14.7 197 158-360 31-236 (239)
83 2ca6_A RAN GTPase-activating p 99.9 2E-25 6.7E-30 218.2 3.4 251 62-362 23-315 (386)
84 4glp_A Monocyte differentiatio 99.9 3.6E-24 1.2E-28 202.6 10.6 199 158-362 91-306 (310)
85 2ast_B S-phase kinase-associat 99.9 6.7E-25 2.3E-29 210.4 4.1 252 24-299 48-314 (336)
86 3goz_A Leucine-rich repeat-con 99.9 1.5E-25 5.2E-30 216.8 -0.7 266 27-323 2-305 (362)
87 2ca6_A RAN GTPase-activating p 99.9 4.3E-26 1.5E-30 222.9 -4.7 247 14-294 23-319 (386)
88 3m19_A Variable lymphocyte rec 99.9 1.6E-22 5.3E-27 185.2 19.0 156 207-362 36-191 (251)
89 3m19_A Variable lymphocyte rec 99.9 1.2E-22 4E-27 186.1 17.9 181 158-341 14-194 (251)
90 4glp_A Monocyte differentiatio 99.9 5.5E-23 1.9E-27 194.5 14.6 201 135-340 91-308 (310)
91 2xwt_C Thyrotropin receptor; s 99.9 9.6E-23 3.3E-27 185.3 15.4 194 136-336 32-236 (239)
92 2ast_B S-phase kinase-associat 99.9 3E-24 1E-28 205.8 2.4 229 135-367 70-311 (336)
93 1h6u_A Internalin H; cell adhe 99.9 2.9E-22 1E-26 189.0 15.4 193 158-366 41-233 (308)
94 1h6u_A Internalin H; cell adhe 99.9 6.2E-22 2.1E-26 186.8 14.6 192 21-267 39-230 (308)
95 4ay9_X Follicle-stimulating ho 99.9 6.6E-21 2.2E-25 183.3 17.8 240 2-265 12-257 (350)
96 4ay9_X Follicle-stimulating ho 99.9 4.8E-21 1.7E-25 184.2 14.9 199 26-244 12-216 (350)
97 3cvr_A Invasion plasmid antige 99.8 2.1E-20 7.2E-25 189.1 17.9 149 181-350 99-254 (571)
98 2o6s_A Variable lymphocyte rec 99.8 9.3E-21 3.2E-25 168.2 13.6 162 182-350 28-189 (208)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 7.4E-21 2.5E-25 170.1 12.7 159 209-370 14-173 (220)
100 2o6s_A Variable lymphocyte rec 99.8 8.9E-21 3.1E-25 168.3 12.4 174 185-368 10-184 (208)
101 2v9t_B SLIT homolog 2 protein 99.8 2.5E-20 8.5E-25 166.7 15.1 160 209-371 14-173 (220)
102 3cvr_A Invasion plasmid antige 99.8 3.1E-20 1.1E-24 187.8 14.8 188 72-326 60-254 (571)
103 2xot_A Amphoterin-induced prot 99.8 6.1E-20 2.1E-24 177.3 15.5 160 207-366 40-205 (361)
104 2xot_A Amphoterin-induced prot 99.8 1.6E-19 5.3E-24 174.4 15.3 177 161-340 21-203 (361)
105 1h6t_A Internalin B; cell adhe 99.8 5.9E-20 2E-24 171.7 11.3 191 160-366 26-216 (291)
106 3e6j_A Variable lymphocyte rec 99.8 5.5E-19 1.9E-23 159.0 16.3 154 209-366 22-175 (229)
107 2v9t_B SLIT homolog 2 protein 99.8 5.2E-19 1.8E-23 158.1 15.3 153 185-340 14-166 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 3.6E-19 1.2E-23 159.1 13.8 154 186-342 15-169 (220)
109 3e6j_A Variable lymphocyte rec 99.8 1.5E-18 5E-23 156.2 16.1 155 184-342 21-175 (229)
110 1h6t_A Internalin B; cell adhe 99.8 2.1E-19 7.2E-24 167.9 10.5 170 158-341 46-215 (291)
111 1m9s_A Internalin B; cell inva 99.8 4.2E-19 1.4E-23 181.6 13.2 191 23-245 21-212 (605)
112 1m9s_A Internalin B; cell inva 99.8 2.8E-19 9.4E-24 182.9 11.0 170 158-341 43-212 (605)
113 1dce_A Protein (RAB geranylger 99.8 1.9E-21 6.3E-26 197.8 -6.6 217 68-333 346-567 (567)
114 4ezg_A Putative uncharacterize 99.8 1.1E-18 3.8E-23 153.3 11.5 151 205-363 43-194 (197)
115 3sb4_A Hypothetical leucine ri 99.8 6.3E-19 2.2E-23 168.0 9.7 256 22-308 48-327 (329)
116 1dce_A Protein (RAB geranylger 99.8 5.4E-21 1.8E-25 194.4 -6.8 122 231-357 442-567 (567)
117 4ezg_A Putative uncharacterize 99.8 1.7E-18 5.6E-23 152.1 9.6 153 179-339 41-194 (197)
118 1w8a_A SLIT protein; signaling 99.8 1.7E-18 6E-23 151.2 9.3 132 209-343 11-143 (192)
119 1w8a_A SLIT protein; signaling 99.8 5.9E-18 2E-22 147.8 12.5 127 233-362 11-138 (192)
120 1xeu_A Internalin C; cellular 99.8 7.2E-19 2.5E-23 161.6 6.8 166 158-362 19-184 (263)
121 1xeu_A Internalin C; cellular 99.7 2E-18 6.9E-23 158.6 7.4 169 134-317 18-187 (263)
122 3sb4_A Hypothetical leucine ri 99.7 1.2E-17 4.2E-22 159.0 12.3 262 1-285 51-328 (329)
123 4b8c_D Glucose-repressible alc 99.7 2.2E-18 7.4E-23 180.8 7.6 178 16-219 217-404 (727)
124 2ell_A Acidic leucine-rich nuc 99.7 2.9E-17 1E-21 140.2 10.8 137 230-368 24-165 (168)
125 4b8c_D Glucose-repressible alc 99.7 9E-19 3.1E-23 183.7 1.5 141 175-319 217-358 (727)
126 2wfh_A SLIT homolog 2 protein 99.7 1.8E-17 6.3E-22 144.6 9.0 115 255-370 32-146 (193)
127 2je0_A Acidic leucine-rich nuc 99.7 3.8E-17 1.3E-21 136.5 8.3 122 1-124 19-145 (149)
128 4fdw_A Leucine rich hypothetic 99.7 1.7E-15 5.8E-20 147.3 21.1 264 22-314 112-382 (401)
129 4fdw_A Leucine rich hypothetic 99.7 2.4E-15 8.3E-20 146.2 22.1 201 130-337 175-381 (401)
130 4fs7_A Uncharacterized protein 99.7 3.3E-15 1.1E-19 145.9 22.4 310 35-359 59-375 (394)
131 2je0_A Acidic leucine-rich nuc 99.7 8.2E-17 2.8E-21 134.5 9.3 127 231-359 18-149 (149)
132 2ell_A Acidic leucine-rich nuc 99.7 7.2E-17 2.5E-21 137.8 8.6 131 207-339 25-160 (168)
133 2wfh_A SLIT homolog 2 protein 99.7 8.8E-16 3E-20 133.9 13.6 128 209-340 13-140 (193)
134 2o6r_A Variable lymphocyte rec 99.7 1.2E-15 4E-20 131.4 14.1 130 209-341 10-139 (177)
135 2o6r_A Variable lymphocyte rec 99.6 1.9E-15 6.5E-20 130.1 12.7 133 231-366 8-140 (177)
136 4fs7_A Uncharacterized protein 99.6 5.5E-14 1.9E-18 137.2 22.9 322 16-355 64-393 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.6 2.9E-15 9.8E-20 128.8 8.7 108 204-315 17-126 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.6 4.9E-15 1.7E-19 127.3 9.9 134 225-362 14-152 (176)
139 3g39_A Variable lymphocyte rec 99.6 1E-14 3.4E-19 124.4 11.0 106 2-110 12-117 (170)
140 1ds9_A Outer arm dynein; leuci 99.6 1.7E-17 5.8E-22 145.8 -6.9 149 207-362 19-184 (198)
141 2r9u_A Variable lymphocyte rec 99.5 2.1E-14 7.2E-19 122.8 11.0 104 2-108 15-118 (174)
142 1ds9_A Outer arm dynein; leuci 99.5 3.7E-17 1.3E-21 143.6 -7.5 152 182-340 18-186 (198)
143 3g39_A Variable lymphocyte rec 99.5 4E-14 1.4E-18 120.7 10.6 107 257-366 12-118 (170)
144 2r9u_A Variable lymphocyte rec 99.5 7.2E-14 2.5E-18 119.5 10.7 108 257-367 15-122 (174)
145 4gt6_A Cell surface protein; l 99.5 7.3E-12 2.5E-16 122.1 26.0 313 14-361 54-389 (394)
146 4gt6_A Cell surface protein; l 99.5 3.5E-12 1.2E-16 124.4 22.3 300 35-362 51-369 (394)
147 2ifg_A High affinity nerve gro 99.4 1.5E-12 5E-17 124.9 9.3 104 234-340 12-117 (347)
148 2ifg_A High affinity nerve gro 99.4 1.6E-12 5.3E-17 124.7 9.6 103 3-108 12-116 (347)
149 3un9_A NLR family member X1; l 99.3 2.4E-14 8E-19 137.9 -4.1 166 182-347 72-260 (372)
150 3un9_A NLR family member X1; l 99.3 9.3E-14 3.2E-18 133.7 -3.1 160 205-364 71-253 (372)
151 4h09_A Hypothetical leucine ri 99.3 8.7E-10 3E-14 106.8 24.1 307 19-349 42-355 (379)
152 4h09_A Hypothetical leucine ri 99.3 1.7E-09 5.9E-14 104.7 26.2 297 11-326 57-356 (379)
153 2ra8_A Uncharacterized protein 99.0 2.1E-10 7.1E-15 109.4 4.0 158 199-361 165-341 (362)
154 2ra8_A Uncharacterized protein 98.9 2.9E-10 9.8E-15 108.4 2.6 82 19-103 135-227 (362)
155 3rw6_A Nuclear RNA export fact 98.6 9.2E-09 3.2E-13 92.9 1.2 105 19-125 137-257 (267)
156 3rw6_A Nuclear RNA export fact 98.6 1.3E-08 4.6E-13 91.9 2.1 81 20-102 167-258 (267)
157 1io0_A Tropomodulin; LRR prote 98.6 8.7E-09 3E-13 88.6 0.8 122 16-149 29-165 (185)
158 1io0_A Tropomodulin; LRR prote 98.6 5.6E-09 1.9E-13 89.8 -0.4 121 39-171 28-164 (185)
159 3e4g_A ATP synthase subunit S, 98.2 3.3E-07 1.1E-11 76.7 1.7 92 15-106 53-150 (176)
160 3e4g_A ATP synthase subunit S, 98.0 3.7E-06 1.3E-10 70.3 4.9 82 255-336 62-149 (176)
161 4asz_A BDNF/NT-3 growth factor 97.8 8.4E-06 2.9E-10 75.4 2.9 32 464-495 68-99 (299)
162 4aoj_A High affinity nerve gro 97.8 9.5E-06 3.3E-10 76.2 2.9 32 464-495 96-127 (329)
163 4gt4_A Tyrosine-protein kinase 97.7 8.8E-06 3E-10 75.6 2.1 32 464-495 82-113 (308)
164 3rfe_A Platelet glycoprotein I 97.6 7.4E-05 2.5E-09 59.5 5.2 63 306-370 12-75 (130)
165 1pgv_A TMD-1, tropomodulin TMD 97.4 3E-05 1E-09 66.1 1.2 118 19-148 37-170 (197)
166 3hmm_A TGF-beta receptor type- 97.4 8.3E-05 2.9E-09 69.0 3.7 32 464-495 50-85 (303)
167 3omv_A RAF proto-oncogene seri 97.4 6.7E-05 2.3E-09 69.5 2.9 31 464-495 85-115 (307)
168 1pgv_A TMD-1, tropomodulin TMD 97.4 2.5E-05 8.4E-10 66.6 -0.1 91 43-145 37-136 (197)
169 3rfe_A Platelet glycoprotein I 97.0 0.0015 5.1E-08 51.9 6.6 57 281-339 11-68 (130)
170 4g3f_A NF-kappa-beta-inducing 96.9 0.0006 2.1E-08 63.8 4.2 32 464-495 103-134 (336)
171 4fih_A Serine/threonine-protei 96.6 0.001 3.6E-08 62.4 3.3 32 464-495 124-155 (346)
172 3fpq_A Serine/threonine-protei 96.6 0.00087 3E-08 61.4 2.6 32 464-495 78-113 (290)
173 3ubd_A Ribosomal protein S6 ki 96.5 0.0018 6.2E-08 59.6 4.5 32 464-495 79-110 (304)
174 4b9d_A Serine/threonine-protei 96.4 0.0016 5.6E-08 61.2 3.3 32 464-495 76-107 (350)
175 4ase_A Vascular endothelial gr 96.4 0.0011 3.7E-08 62.7 1.9 32 464-495 120-153 (353)
176 4fie_A Serine/threonine-protei 96.4 0.0017 5.8E-08 62.7 3.3 32 464-495 201-232 (423)
177 4aw0_A HPDK1, 3-phosphoinositi 96.0 0.0041 1.4E-07 57.4 3.7 32 464-495 85-116 (311)
178 3hyh_A Carbon catabolite-derep 95.7 0.0047 1.6E-07 56.0 2.6 31 464-494 66-96 (275)
179 2qol_A Ephrin receptor; recept 95.6 0.0048 1.6E-07 59.0 2.7 32 464-495 99-130 (373)
180 2x4f_A Myosin light chain kina 95.6 0.007 2.4E-07 57.8 3.7 32 464-495 139-170 (373)
181 3s95_A LIMK-1, LIM domain kina 95.4 0.0095 3.2E-07 55.1 3.9 32 464-495 60-91 (310)
182 4g31_A Eukaryotic translation 95.3 0.0088 3E-07 55.0 3.2 32 464-495 56-99 (299)
183 2c30_A Serine/threonine-protei 95.2 0.012 4.2E-07 54.8 3.8 32 464-495 95-126 (321)
184 3cbl_A C-FES, proto-oncogene t 95.2 0.0084 2.9E-07 57.3 2.7 32 464-495 165-196 (377)
185 2qkw_B Protein kinase; three-h 95.1 0.0091 3.1E-07 55.6 2.7 32 464-495 88-119 (321)
186 1opk_A P150, C-ABL, proto-onco 95.0 0.0079 2.7E-07 59.9 2.1 32 464-495 269-300 (495)
187 3hko_A Calcium/calmodulin-depe 95.0 0.012 4E-07 55.4 3.1 32 464-495 81-112 (345)
188 3kul_A Ephrin type-A receptor 95.0 0.0089 3E-07 55.8 2.2 32 464-495 103-134 (325)
189 3kmu_A ILK, integrin-linked ki 94.9 0.013 4.6E-07 52.7 3.2 32 464-495 60-93 (271)
190 4fvq_A Tyrosine-protein kinase 94.9 0.011 3.8E-07 53.9 2.6 32 464-495 65-96 (289)
191 3uim_A Brassinosteroid insensi 94.9 0.011 3.8E-07 55.1 2.6 32 464-495 80-111 (326)
192 3gni_B Strad alpha; kinase fol 94.8 0.015 5.1E-07 55.8 3.3 32 464-495 79-110 (389)
193 3eqc_A Dual specificity mitoge 94.8 0.021 7.1E-07 54.1 4.3 32 464-495 84-115 (360)
194 4ejn_A RAC-alpha serine/threon 94.8 0.02 6.7E-07 56.1 4.2 32 464-495 201-232 (446)
195 3v8s_A RHO-associated protein 94.7 0.015 5E-07 56.3 3.1 32 464-495 122-153 (410)
196 4eqm_A Protein kinase; transfe 94.7 0.019 6.5E-07 52.6 3.6 32 464-495 64-95 (294)
197 3f3z_A Calcium/calmodulin-depe 94.7 0.018 6.2E-07 52.2 3.4 32 464-495 59-90 (277)
198 4aw2_A Serine/threonine-protei 94.7 0.016 5.4E-07 56.6 3.1 32 464-495 127-158 (437)
199 3fxz_A Serine/threonine-protei 94.6 0.017 5.9E-07 53.0 3.3 32 464-495 70-101 (297)
200 2w4o_A Calcium/calmodulin-depe 94.6 0.016 5.5E-07 54.7 3.1 32 464-495 101-132 (349)
201 4hcu_A Tyrosine-protein kinase 94.6 0.015 5E-07 52.5 2.6 32 464-495 58-89 (269)
202 2pmi_A Negative RE, cyclin-dep 94.6 0.018 6.1E-07 53.5 3.3 32 464-495 56-87 (317)
203 3is5_A Calcium-dependent prote 94.6 0.02 6.7E-07 52.2 3.5 32 464-495 73-104 (285)
204 3tki_A Serine/threonine-protei 94.6 0.017 5.8E-07 53.8 3.1 32 464-495 58-89 (323)
205 3fe3_A MAP/microtubule affinit 94.6 0.017 5.9E-07 54.0 3.1 32 464-495 67-98 (328)
206 3c0i_A Peripheral plasma membr 94.6 0.018 6.2E-07 54.4 3.3 32 464-495 79-110 (351)
207 1luf_A Muscle-specific tyrosin 94.5 0.014 4.8E-07 54.8 2.4 32 464-495 103-134 (343)
208 1u5q_A Serine/threonine protei 94.5 0.018 6.2E-07 54.3 3.2 31 464-494 107-137 (348)
209 3fdn_A Serine/threonine-protei 94.5 0.024 8.2E-07 51.4 3.7 32 464-495 62-93 (279)
210 3uqc_A Probable conserved tran 94.4 0.021 7.3E-07 52.1 3.3 31 464-494 84-114 (286)
211 2bdw_A Hypothetical protein K1 94.4 0.02 6.7E-07 54.4 3.1 32 464-495 81-112 (362)
212 1tki_A Titin; serine kinase, m 94.4 0.022 7.5E-07 53.0 3.3 32 464-495 54-85 (321)
213 3uto_A Twitchin; kinase, muscl 94.4 0.019 6.7E-07 58.0 3.1 32 464-495 207-238 (573)
214 2rku_A Serine/threonine-protei 94.4 0.023 8E-07 51.9 3.4 32 464-495 68-99 (294)
215 3o0g_A Cell division protein k 94.4 0.026 8.9E-07 51.6 3.8 31 464-494 54-84 (292)
216 1ob3_A PFPK5, cell division co 94.3 0.026 9E-07 51.5 3.8 31 464-494 53-83 (288)
217 3p86_A Serine/threonine-protei 94.3 0.016 5.4E-07 53.7 2.2 32 464-495 87-118 (309)
218 1k9a_A Carboxyl-terminal SRC k 94.3 0.021 7.1E-07 56.0 3.2 32 464-495 239-271 (450)
219 3l9p_A Anaplastic lymphoma kin 94.3 0.015 5.1E-07 55.3 2.1 32 464-495 127-158 (367)
220 3soc_A Activin receptor type-2 94.3 0.021 7.2E-07 53.1 3.1 32 464-495 71-106 (322)
221 2vwi_A Serine/threonine-protei 94.3 0.028 9.5E-07 51.6 3.8 32 464-495 66-97 (303)
222 3dtc_A Mitogen-activated prote 94.3 0.016 5.6E-07 52.2 2.2 32 464-495 59-90 (271)
223 2y0a_A Death-associated protei 94.3 0.021 7.3E-07 53.2 3.1 32 464-495 67-98 (326)
224 3cok_A Serine/threonine-protei 94.3 0.027 9.3E-07 51.0 3.7 32 464-495 64-95 (278)
225 3zgw_A Maternal embryonic leuc 94.3 0.024 8.2E-07 53.4 3.4 32 464-495 61-92 (347)
226 2psq_A Fibroblast growth facto 94.3 0.016 5.4E-07 55.3 2.1 32 464-495 139-171 (370)
227 3a62_A Ribosomal protein S6 ki 94.2 0.021 7.3E-07 53.3 2.9 32 464-495 74-105 (327)
228 2ivs_A Proto-oncogene tyrosine 94.2 0.02 7E-07 52.8 2.7 32 464-495 79-110 (314)
229 3sxs_A Cytoplasmic tyrosine-pr 94.2 0.018 6.3E-07 51.8 2.3 32 464-495 56-87 (268)
230 3bhy_A Death-associated protei 94.2 0.024 8.1E-07 51.5 3.1 32 464-495 61-92 (283)
231 2yab_A Death-associated protei 94.2 0.029 9.8E-07 53.2 3.7 32 464-495 68-99 (361)
232 2nru_A Interleukin-1 receptor- 94.1 0.017 6E-07 53.2 2.1 32 464-495 83-114 (307)
233 3gbz_A Kinase, CMGC CDK; ssgci 94.1 0.032 1.1E-06 52.0 3.9 31 464-494 86-116 (329)
234 1kob_A Twitchin; kinase, intra 94.1 0.03 1E-06 53.7 3.8 32 464-495 101-132 (387)
235 3uc3_A Serine/threonine-protei 94.1 0.025 8.4E-07 53.7 3.1 32 464-495 69-100 (361)
236 3kn6_A Ribosomal protein S6 ki 94.1 0.042 1.4E-06 51.2 4.6 32 464-495 58-90 (325)
237 3lij_A Calcium/calmodulin depe 94.0 0.03 1E-06 55.6 3.7 32 464-495 89-120 (494)
238 2owb_A Serine/threonine-protei 94.0 0.03 1E-06 52.4 3.5 32 464-495 94-125 (335)
239 4agu_A Cyclin-dependent kinase 94.0 0.024 8.3E-07 52.3 2.8 32 464-495 55-86 (311)
240 2j7t_A Serine/threonine-protei 94.0 0.025 8.5E-07 51.9 2.8 32 464-495 69-100 (302)
241 2clq_A Mitogen-activated prote 94.0 0.028 9.6E-07 51.4 3.1 31 464-494 72-102 (295)
242 2zv2_A Calcium/calmodulin-depe 94.0 0.031 1.1E-06 51.2 3.4 32 464-495 89-122 (298)
243 3niz_A Rhodanese family protei 93.9 0.022 7.4E-07 52.8 2.3 31 464-494 72-102 (311)
244 1fot_A TPK1 delta, CAMP-depend 93.9 0.033 1.1E-06 51.7 3.4 32 464-495 59-90 (318)
245 3t9t_A Tyrosine-protein kinase 93.8 0.025 8.5E-07 50.8 2.4 32 464-495 56-87 (267)
246 3mtl_A Cell division protein k 93.8 0.033 1.1E-06 51.8 3.4 31 464-494 53-83 (324)
247 1mqb_A Ephrin type-A receptor 93.8 0.026 8.9E-07 52.8 2.6 32 464-495 99-130 (333)
248 2pml_X PFPK7, Ser/Thr protein 93.8 0.027 9.4E-07 52.9 2.8 32 464-495 96-127 (348)
249 3kk8_A Calcium/calmodulin depe 93.8 0.032 1.1E-06 50.7 3.1 32 464-495 58-89 (284)
250 2vgo_A Serine/threonine-protei 93.8 0.036 1.2E-06 50.3 3.5 32 464-495 67-98 (284)
251 3gen_A Tyrosine-protein kinase 93.7 0.028 9.7E-07 51.0 2.7 32 464-495 72-103 (283)
252 2h6d_A 5'-AMP-activated protei 93.7 0.037 1.3E-06 50.0 3.4 32 464-495 64-95 (276)
253 2h34_A Serine/threonine-protei 93.7 0.042 1.4E-06 50.7 3.9 32 464-495 87-118 (309)
254 2pzi_A Probable serine/threoni 93.7 0.033 1.1E-06 57.8 3.4 32 464-495 132-168 (681)
255 1fvr_A Tyrosine-protein kinase 93.7 0.044 1.5E-06 51.0 3.9 32 464-495 78-110 (327)
256 1x8b_A WEE1HU, WEE1-like prote 93.7 0.036 1.2E-06 50.3 3.3 32 464-495 63-95 (289)
257 4fl3_A Tyrosine-protein kinase 93.7 0.028 9.4E-07 57.8 2.7 31 464-495 423-453 (635)
258 2i1m_A Macrophage colony-stimu 93.7 0.022 7.5E-07 53.2 1.8 32 464-495 102-134 (333)
259 3q5i_A Protein kinase; CDPK, m 93.6 0.036 1.2E-06 55.2 3.4 32 464-495 99-130 (504)
260 3soa_A Calcium/calmodulin-depe 93.6 0.033 1.1E-06 54.4 3.0 32 464-495 63-94 (444)
261 3qd2_B Eukaryotic translation 93.6 0.041 1.4E-06 51.1 3.6 21 464-484 57-77 (332)
262 4fr4_A YANK1, serine/threonine 93.6 0.04 1.4E-06 52.7 3.5 32 464-495 68-99 (384)
263 1o6l_A RAC-beta serine/threoni 93.5 0.041 1.4E-06 51.6 3.5 32 464-495 58-89 (337)
264 4b99_A Mitogen-activated prote 93.5 0.039 1.3E-06 52.9 3.3 31 464-494 106-142 (398)
265 2yfx_A Tyrosine-protein kinase 93.5 0.027 9.3E-07 52.5 2.1 32 464-495 86-117 (327)
266 2yex_A Serine/threonine-protei 93.5 0.046 1.6E-06 49.3 3.6 32 464-495 58-89 (276)
267 3kfa_A Tyrosine-protein kinase 93.4 0.03 1E-06 50.9 2.3 32 464-495 62-93 (288)
268 2ozo_A Tyrosine-protein kinase 93.4 0.038 1.3E-06 56.5 3.2 31 464-495 389-419 (613)
269 2wqm_A Serine/threonine-protei 93.4 0.047 1.6E-06 50.3 3.6 32 464-495 85-116 (310)
270 3dls_A PAS domain-containing s 93.4 0.049 1.7E-06 51.0 3.7 31 464-494 82-112 (335)
271 3h4j_B AMPK kdaid, SNF1-like p 93.4 0.047 1.6E-06 51.1 3.6 31 464-494 62-92 (336)
272 1p4o_A Insulin-like growth fac 93.4 0.037 1.3E-06 51.3 2.9 32 464-495 81-112 (322)
273 3poz_A Epidermal growth factor 93.4 0.037 1.3E-06 51.6 2.8 31 464-495 70-100 (327)
274 2r5t_A Serine/threonine-protei 93.4 0.057 2E-06 51.4 4.2 32 464-495 92-123 (373)
275 1t46_A HOMO sapiens V-KIT hard 93.4 0.026 9E-07 52.1 1.8 32 464-495 79-111 (313)
276 4aaa_A Cyclin-dependent kinase 93.3 0.037 1.3E-06 51.6 2.8 31 464-494 77-107 (331)
277 2vd5_A DMPK protein; serine/th 93.3 0.041 1.4E-06 53.2 3.1 32 464-495 114-145 (412)
278 2y4i_B KSR2, HKSR2, kinase sup 93.3 0.041 1.4E-06 50.9 3.0 32 464-495 82-113 (319)
279 3c1x_A Hepatocyte growth facto 93.3 0.034 1.2E-06 53.0 2.5 32 464-495 143-175 (373)
280 2r3i_A Cell division protein k 93.2 0.055 1.9E-06 49.5 3.8 31 464-494 55-85 (299)
281 2a2a_A Death-associated protei 93.2 0.045 1.5E-06 50.8 3.1 32 464-495 68-99 (321)
282 2jam_A Calcium/calmodulin-depe 93.2 0.045 1.5E-06 50.3 3.1 32 464-495 59-90 (304)
283 2y94_A 5'-AMP-activated protei 93.1 0.054 1.8E-06 53.4 3.7 32 464-495 69-100 (476)
284 2eue_A Carbon catabolite derep 93.1 0.042 1.4E-06 49.6 2.7 31 464-494 66-96 (275)
285 3kex_A Receptor tyrosine-prote 93.1 0.041 1.4E-06 51.2 2.7 31 464-495 68-98 (325)
286 3fme_A Dual specificity mitoge 93.1 0.055 1.9E-06 49.2 3.5 31 464-494 59-89 (290)
287 4euu_A Serine/threonine-protei 93.0 0.046 1.6E-06 50.7 2.9 32 464-495 60-93 (319)
288 1qcf_A Haematopoetic cell kina 93.0 0.041 1.4E-06 54.0 2.7 31 464-495 236-266 (454)
289 3vhe_A Vascular endothelial gr 93.0 0.032 1.1E-06 52.7 1.8 32 464-495 78-111 (359)
290 3i6u_A CDS1, serine/threonine- 93.0 0.037 1.3E-06 53.7 2.3 31 464-495 193-223 (419)
291 3aln_A Dual specificity mitoge 93.0 0.06 2.1E-06 50.0 3.6 31 464-494 74-104 (327)
292 2wei_A Calmodulin-domain prote 92.9 0.06 2E-06 49.0 3.4 32 464-495 74-105 (287)
293 3a7i_A MST3 kinase, serine/thr 92.9 0.056 1.9E-06 49.6 3.3 32 464-495 73-104 (303)
294 3an0_A Dual specificity mitoge 92.9 0.058 2E-06 50.5 3.4 31 464-494 103-133 (340)
295 3tt0_A Basic fibroblast growth 92.9 0.034 1.2E-06 53.2 1.8 32 464-495 127-159 (382)
296 3com_A Serine/threonine-protei 92.8 0.064 2.2E-06 49.5 3.6 31 464-494 77-107 (314)
297 3ork_A Serine/threonine protei 92.8 0.035 1.2E-06 51.3 1.8 31 464-494 65-99 (311)
298 1fmk_A C-SRC, P60-SRC, tyrosin 92.8 0.038 1.3E-06 54.2 2.0 31 464-495 232-262 (452)
299 1rjb_A FL cytokine receptor; k 92.8 0.036 1.2E-06 52.0 1.8 32 464-495 101-133 (344)
300 3p1a_A MYT1 kinase, membrane-a 92.7 0.079 2.7E-06 48.9 4.1 27 468-494 114-140 (311)
301 2pvf_A Fibroblast growth facto 92.7 0.038 1.3E-06 51.6 1.9 32 464-495 93-125 (334)
302 1rdq_E PKA C-alpha, CAMP-depen 92.7 0.072 2.5E-06 50.2 3.7 32 464-495 94-125 (350)
303 1ua2_A CAK, cell division prot 92.6 0.044 1.5E-06 51.5 2.2 31 464-494 65-95 (346)
304 2w5a_A Serine/threonine-protei 92.6 0.059 2E-06 48.7 3.0 32 464-495 58-91 (279)
305 1phk_A Phosphorylase kinase; g 92.6 0.056 1.9E-06 49.4 2.8 32 464-495 76-108 (298)
306 3nyv_A Calmodulin-domain prote 92.6 0.071 2.4E-06 52.7 3.7 32 464-495 79-110 (484)
307 3mwu_A Calmodulin-domain prote 92.5 0.06 2E-06 53.3 3.1 32 464-495 74-105 (486)
308 1u59_A Tyrosine-protein kinase 92.4 0.057 2E-06 49.1 2.7 31 464-495 63-93 (287)
309 2h8h_A Proto-oncogene tyrosine 92.4 0.044 1.5E-06 55.0 2.0 31 464-495 315-345 (535)
310 4eut_A Serine/threonine-protei 92.4 0.061 2.1E-06 51.7 2.9 32 464-495 60-93 (396)
311 3a8x_A Protein kinase C IOTA t 92.4 0.066 2.2E-06 50.3 3.1 32 464-495 62-94 (345)
312 2ac3_A MAP kinase-interacting 92.4 0.07 2.4E-06 49.2 3.3 32 464-495 63-95 (316)
313 1t4h_A Serine/threonine-protei 92.4 0.074 2.5E-06 48.4 3.4 32 464-495 78-113 (290)
314 1mp8_A Focal adhesion kinase 1 92.4 0.059 2E-06 48.8 2.7 31 464-495 69-99 (281)
315 4e5w_A Tyrosine-protein kinase 92.4 0.069 2.4E-06 48.9 3.1 32 464-495 76-109 (302)
316 1xbb_A Tyrosine-protein kinase 92.3 0.067 2.3E-06 48.8 3.0 31 464-495 71-101 (291)
317 2ks1_B Epidermal growth factor 92.3 0.19 6.4E-06 30.5 3.8 19 419-437 21-39 (44)
318 2eva_A TAK1 kinase - TAB1 chim 92.3 0.028 9.6E-07 51.9 0.3 30 464-495 54-83 (307)
319 2acx_A G protein-coupled recep 92.3 0.067 2.3E-06 53.9 3.1 32 464-495 237-268 (576)
320 3v5w_A G-protein coupled recep 92.3 0.082 2.8E-06 53.9 3.7 32 464-495 245-276 (689)
321 2wtk_C Serine/threonine-protei 92.2 0.056 1.9E-06 49.6 2.3 31 464-494 59-91 (305)
322 3ugc_A Tyrosine-protein kinase 92.2 0.032 1.1E-06 51.0 0.6 32 464-495 64-97 (295)
323 3lxp_A Non-receptor tyrosine-p 92.1 0.082 2.8E-06 48.9 3.3 32 464-495 86-119 (318)
324 3qup_A Tyrosine-protein kinase 92.1 0.065 2.2E-06 49.7 2.6 32 464-495 78-115 (323)
325 2ycf_A Serine/threonine-protei 92.0 0.073 2.5E-06 49.3 2.9 31 464-495 68-98 (322)
326 4dc2_A Protein kinase C IOTA t 92.0 0.071 2.4E-06 51.2 2.8 32 464-495 105-137 (396)
327 3e3p_A Protein kinase, putativ 92.0 0.063 2.2E-06 50.6 2.4 32 464-495 72-110 (360)
328 3brb_A Proto-oncogene tyrosine 92.0 0.059 2E-06 49.7 2.2 32 464-495 89-125 (313)
329 2qr7_A Ribosomal protein S6 ki 92.0 0.073 2.5E-06 50.0 2.8 32 464-495 68-100 (342)
330 3gxj_A TGF-beta receptor type- 91.9 0.098 3.4E-06 47.8 3.6 29 467-495 53-85 (303)
331 2dyl_A Dual specificity mitoge 91.9 0.086 3E-06 48.6 3.2 31 464-494 77-107 (318)
332 1byg_A CSK, protein (C-termina 91.8 0.079 2.7E-06 47.8 2.8 32 464-495 67-99 (278)
333 3lxl_A Tyrosine-protein kinase 91.7 0.1 3.4E-06 48.5 3.4 32 464-495 77-110 (327)
334 3f66_A Hepatocyte growth facto 91.7 0.06 2E-06 49.2 1.9 32 464-495 79-111 (298)
335 2y7j_A Phosphorylase B kinase 91.7 0.082 2.8E-06 50.1 2.9 32 464-495 152-184 (365)
336 3p23_A Serine/threonine-protei 91.7 0.14 4.8E-06 49.8 4.6 31 464-494 70-101 (432)
337 3mdy_A Bone morphogenetic prot 91.6 0.13 4.5E-06 47.8 4.2 31 465-495 85-119 (337)
338 4e7w_A Glycogen synthase kinas 91.5 0.082 2.8E-06 50.7 2.6 31 464-494 85-121 (394)
339 3pls_A Macrophage-stimulating 91.5 0.064 2.2E-06 49.0 1.8 32 464-495 75-107 (298)
340 4azs_A Methyltransferase WBDD; 91.5 0.17 5.7E-06 51.2 4.9 32 464-495 294-326 (569)
341 1zy4_A Serine/threonine-protei 91.4 0.095 3.2E-06 47.8 2.9 32 464-495 55-99 (303)
342 3txo_A PKC-L, NPKC-ETA, protei 91.3 0.1 3.5E-06 49.1 3.1 32 464-495 76-108 (353)
343 3c4z_A Rhodopsin kinase; Ser/T 91.3 0.1 3.5E-06 52.3 3.1 32 464-495 238-269 (543)
344 3eb0_A Putative uncharacterize 91.1 0.13 4.3E-06 49.1 3.5 20 464-483 53-72 (383)
345 2buj_A Serine/threonine-protei 91.0 0.075 2.6E-06 49.1 1.7 32 464-495 79-114 (317)
346 1xjd_A Protein kinase C, theta 91.0 0.11 3.7E-06 48.9 2.8 32 464-495 70-102 (345)
347 1j1b_A Glycogen synthase kinas 90.9 0.082 2.8E-06 51.2 2.0 31 464-494 100-136 (420)
348 1vzo_A Ribosomal protein S6 ki 90.9 0.11 3.9E-06 48.9 2.9 32 464-495 111-143 (355)
349 2a19_B Interferon-induced, dou 90.9 0.094 3.2E-06 47.4 2.3 32 464-495 57-104 (284)
350 3lb7_A RAF proto-oncogene seri 90.8 0.12 4.1E-06 47.6 2.9 31 464-495 85-115 (307)
351 4f9c_A Cell division cycle 7-r 90.7 0.1 3.5E-06 49.3 2.4 32 464-495 72-104 (361)
352 3rgf_A Cyclin-dependent kinase 90.6 0.11 3.7E-06 50.0 2.5 31 464-494 71-103 (405)
353 3e7e_A HBUB1, BUB1A, mitotic c 90.5 0.15 5.1E-06 48.2 3.4 31 465-495 121-151 (365)
354 2xir_A Vascular endothelial gr 90.5 0.093 3.2E-06 48.3 1.9 32 464-495 83-116 (316)
355 3mi9_A Cell division protein k 90.4 0.14 4.8E-06 48.1 3.1 31 464-494 69-107 (351)
356 2w1i_A JAK2; chromosomal rearr 90.3 0.11 3.9E-06 48.1 2.4 32 464-495 95-128 (326)
357 2j0j_A Focal adhesion kinase 1 90.3 0.11 3.8E-06 53.5 2.4 31 464-495 444-474 (656)
358 1b6c_B TGF-B superfamily recep 90.2 0.2 6.7E-06 46.7 3.9 29 467-495 92-124 (342)
359 3lzb_A Epidermal growth factor 90.1 0.14 4.8E-06 47.6 2.7 31 464-495 70-100 (327)
360 4f0f_A Serine/threonine-protei 90.0 0.14 4.7E-06 46.5 2.5 29 464-494 76-104 (287)
361 1qpc_A LCK kinase; alpha beta 89.9 0.12 4.2E-06 46.6 2.1 31 464-495 61-91 (279)
362 2xrw_A Mitogen-activated prote 89.8 0.15 5E-06 48.4 2.6 31 464-494 77-113 (371)
363 3en9_A Glycoprotease, O-sialog 89.7 0.092 3.1E-06 52.7 1.2 32 464-495 392-423 (540)
364 1u46_A ACK-1, activated CDC42 89.5 0.14 4.8E-06 46.4 2.2 31 464-495 74-104 (291)
365 3q4u_A Activin receptor type-1 89.5 0.2 6.8E-06 45.7 3.3 31 465-495 56-90 (301)
366 3g33_A Cell division protein k 89.4 0.2 6.9E-06 45.9 3.2 30 465-494 68-102 (308)
367 2x7f_A TRAF2 and NCK-interacti 89.3 0.19 6.5E-06 46.5 3.0 32 464-495 73-111 (326)
368 1blx_A Cyclin-dependent kinase 89.2 0.16 5.4E-06 47.0 2.4 30 465-494 68-102 (326)
369 2i6l_A Mitogen-activated prote 89.2 0.19 6.4E-06 46.3 2.9 31 464-494 61-105 (320)
370 3og7_A AKAP9-BRAF fusion prote 89.2 0.17 5.7E-06 46.0 2.5 30 464-494 73-102 (289)
371 3op5_A Serine/threonine-protei 89.1 0.17 5.8E-06 47.8 2.6 30 464-493 101-134 (364)
372 2rio_A Serine/threonine-protei 88.9 0.19 6.4E-06 48.9 2.7 31 464-494 61-92 (434)
373 3oz6_A Mitogen-activated prote 88.8 0.2 6.7E-06 47.8 2.8 31 464-494 61-94 (388)
374 3cc6_A Protein tyrosine kinase 88.8 0.15 5.2E-06 46.0 1.9 31 464-495 66-96 (281)
375 2l2t_A Receptor tyrosine-prote 88.8 0.39 1.3E-05 29.1 3.0 16 422-437 23-38 (44)
376 2i0e_A Protein kinase C-beta I 88.6 0.28 9.7E-06 46.1 3.7 32 464-495 73-105 (353)
377 3ttj_A Mitogen-activated prote 88.5 0.12 4.1E-06 50.8 1.1 31 464-494 114-150 (464)
378 2v62_A Serine/threonine-protei 88.2 0.22 7.5E-06 46.6 2.6 30 464-493 101-134 (345)
379 3llt_A Serine/threonine kinase 88.1 0.32 1.1E-05 45.7 3.7 27 468-494 93-119 (360)
380 2b9h_A MAP kinase FUS3, mitoge 88.0 0.18 6E-06 47.4 1.8 31 464-494 62-97 (353)
381 3pg1_A Mitogen-activated prote 88.0 0.15 5.3E-06 48.0 1.4 31 464-494 82-117 (362)
382 3lm5_A Serine/threonine-protei 87.7 0.36 1.2E-05 44.7 3.8 32 464-495 81-113 (327)
383 3n9x_A Phosphotransferase; mal 87.7 0.18 6.3E-06 48.9 1.8 31 464-494 78-113 (432)
384 3rp9_A Mitogen-activated prote 87.7 0.16 5.6E-06 49.7 1.4 31 464-494 105-140 (458)
385 3m2w_A MAP kinase-activated pr 87.4 0.31 1.1E-05 44.5 3.1 31 465-495 65-99 (299)
386 4exu_A Mitogen-activated prote 87.4 0.16 5.5E-06 48.2 1.1 31 464-494 94-130 (371)
387 1nxk_A MAP kinase-activated pr 87.3 0.3 1E-05 46.8 3.0 31 465-495 109-143 (400)
388 3nsz_A CK II alpha, casein kin 87.3 0.27 9.2E-06 45.5 2.6 32 464-495 83-117 (330)
389 2izr_A Casein kinase I isoform 87.2 0.27 9.3E-06 45.6 2.6 31 464-494 57-88 (330)
390 3coi_A Mitogen-activated prote 86.1 0.21 7.1E-06 46.9 1.1 31 464-494 76-112 (353)
391 1cm8_A Phosphorylated MAP kina 85.2 0.22 7.5E-06 47.1 0.8 31 464-494 77-113 (367)
392 3qa8_A MGC80376 protein; kinas 85.1 0.15 5E-06 52.3 -0.5 32 464-495 65-102 (676)
393 3fhr_A MAP kinase-activated pr 83.7 0.49 1.7E-05 44.0 2.5 32 464-495 75-110 (336)
394 3g2f_A Bone morphogenetic prot 83.4 0.79 2.7E-05 42.4 3.8 32 464-495 60-96 (336)
395 3qyz_A Mitogen-activated prote 83.0 0.41 1.4E-05 45.1 1.6 31 464-494 78-113 (364)
396 2iwi_A Serine/threonine-protei 82.7 0.34 1.2E-05 44.5 0.9 31 464-494 87-122 (312)
397 3ll6_A Cyclin G-associated kin 81.5 0.47 1.6E-05 43.9 1.5 31 464-494 78-117 (337)
398 3byv_A Rhoptry kinase; malaria 80.2 0.44 1.5E-05 45.2 0.8 31 464-494 129-183 (377)
399 3dbq_A Dual specificity protei 79.9 0.87 3E-05 42.4 2.7 31 464-494 60-92 (343)
400 2fst_X Mitogen-activated prote 79.2 0.57 2E-05 44.2 1.2 31 464-494 81-117 (367)
401 3pfq_A PKC-B, PKC-beta, protei 78.0 1 3.5E-05 46.4 2.8 32 464-495 394-426 (674)
402 2jii_A Serine/threonine-protei 77.7 0.52 1.8E-05 44.1 0.4 30 464-493 95-140 (352)
403 3kvw_A DYRK2, dual specificity 77.6 1.8 6.3E-05 41.7 4.3 28 467-494 155-182 (429)
404 1csn_A Casein kinase-1; phosph 77.0 1.3 4.5E-05 40.0 2.9 30 464-493 58-88 (298)
405 2zmd_A Dual specificity protei 76.9 1.2 4E-05 42.4 2.7 30 464-493 107-138 (390)
406 2lz0_A Uncharacterized protein 75.4 7 0.00024 28.7 6.0 45 35-80 8-52 (100)
407 3a99_A Proto-oncogene serine/t 72.9 1.8 6.1E-05 39.8 2.7 31 464-494 99-131 (320)
408 2vuw_A Serine/threonine-protei 70.5 2.7 9.2E-05 38.8 3.4 13 483-495 134-146 (336)
409 3cek_A Dual specificity protei 70.5 2 7E-05 39.1 2.5 30 464-493 79-110 (313)
410 1wak_A Serine/threonine-protei 69.6 1.4 4.7E-05 41.8 1.1 25 470-494 100-128 (397)
411 2lz0_A Uncharacterized protein 68.7 14 0.00048 27.0 6.3 49 9-58 6-54 (100)
412 2vx3_A Dual specificity tyrosi 64.6 4.6 0.00016 38.0 3.7 27 469-495 114-140 (382)
413 1z57_A Dual specificity protei 63.7 2.2 7.6E-05 39.2 1.3 25 470-494 76-100 (339)
414 3q60_A ROP5B; pseudokinase, tr 56.1 4.8 0.00016 37.7 2.1 30 464-494 118-171 (371)
415 2eu9_A Dual specificity protei 55.8 4 0.00014 37.7 1.5 31 464-494 69-105 (355)
416 2l9u_A Receptor tyrosine-prote 54.9 18 0.00062 20.1 3.4 20 418-437 15-34 (40)
417 1q8y_A SR protein kinase; tran 53.9 3.7 0.00013 38.3 1.0 28 467-494 82-113 (373)
418 4hgt_A Casein kinase I isoform 51.9 6.5 0.00022 35.1 2.2 31 464-494 57-88 (296)
419 3uzp_A CKI-delta, CKID, casein 51.7 6.6 0.00022 35.1 2.2 31 464-494 57-88 (296)
420 3sv0_A Casein kinase I-like; t 30.6 27 0.00092 34.0 2.9 31 464-494 55-86 (483)
421 1nd4_A Aminoglycoside 3'-phosp 24.2 34 0.0011 29.5 2.1 32 464-495 66-99 (264)
422 1zar_A RIO2 kinase; serine kin 20.0 20 0.00067 32.0 -0.4 28 464-495 157-184 (282)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.2e-56 Score=470.09 Aligned_cols=397 Identities=32% Similarity=0.445 Sum_probs=354.6
Q ss_pred CcEEEeeCCcccccCCccCcCC-ccCCeeecccCcccccCCcccccCcccceeecccccccccCCcc-ccCCCCCCeeec
Q 041558 1 MALLIIHNNSLSGFIPLNIGNS-QFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSN-VGKLKSLGDLQL 78 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~l 78 (495)
|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..|+++++|++|++++|.+.+.+|.. +.++++|++|++
T Consensus 271 L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence 5778888888888888887765 88888888888888888888888888888888888888777765 888888888888
Q ss_pred cCCcccccCChhhhcCC-CCCEEecCCCcccccCCccccC--CCCCCEEee--------ecccccCCCCCCEEEcccccc
Q 041558 79 NGNQFISYIPSSFGNLT-NLSTSRLSKNKLFVSIPNEIGK--MRSLNILEV--------LPLSVSNLTNPKELALLYNCL 147 (495)
Q Consensus 79 ~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~--l~~L~~L~l--------~~~~l~~~~~L~~L~l~~n~l 147 (495)
++|.+++.+|..+.+++ +|++|++++|.+++.+|..+.. +++|+.|++ +|..+..+++|+.|++++|.+
T Consensus 351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence 88888888888888877 8888888888888888887776 778888887 778888999999999999999
Q ss_pred ccCCCccCcc-cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCC
Q 041558 148 SGSIPPSLEN-PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNR 226 (495)
Q Consensus 148 ~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 226 (495)
++.+|..+.. ++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..++.+++|++|++++|++++.+|.++
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 510 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence 9999988887 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCC---------------------------------
Q 041558 227 EKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKE--------------------------------- 273 (495)
Q Consensus 227 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~--------------------------------- 273 (495)
+.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.++|.+|..
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA 590 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999888766643
Q ss_pred -------------------------------------CccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCC
Q 041558 274 -------------------------------------LGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNN 316 (495)
Q Consensus 274 -------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 316 (495)
+..+++|+.|++++|+++|.+|..++.+++|+.|+|++|.++|
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g 670 (768)
T 3rgz_A 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670 (768)
T ss_dssp EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence 3445789999999999999999999999999999999999999
Q ss_pred CchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCC-CCCCCcccccCCChhhccCCcCCCCCCCCCCCc
Q 041558 317 LIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL-GPIPNSIAFRGASVEALKGNKRLCVSAKGLQPC 395 (495)
Q Consensus 317 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l-~~~p~~~~~~~~~~~~~~~n~~~c~~~~~~~~c 395 (495)
.+|..++.+++|+.|||++|+++|.+|..+..++.|+.||+++|++ +.+|...++..++...+.||+.+|+.|.. +|
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~--~C 748 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP--RC 748 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC--CC
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc--CC
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999998754 78
Q ss_pred cccc
Q 041558 396 KALR 399 (495)
Q Consensus 396 ~~~~ 399 (495)
....
T Consensus 749 ~~~~ 752 (768)
T 3rgz_A 749 DPSN 752 (768)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 6433
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.9e-50 Score=425.52 Aligned_cols=383 Identities=33% Similarity=0.443 Sum_probs=287.7
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCC-CCCCeeecc
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKL-KSLGDLQLN 79 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l-~~L~~L~l~ 79 (495)
|++|++++|.+++.+|..|+++++|++|++++|.+++.+|.. .+++|++|++++|.+.+.+|..+... ++|++|+++
T Consensus 225 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC
T ss_pred CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc
Confidence 566777777777666777777777777777666666555433 45555555555555555555544432 555555555
Q ss_pred CCcccccCChhhhcCCCCCEEecCCCcccccCCcc-ccCCCCCCEEe-------------------------e-------
Q 041558 80 GNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNE-IGKMRSLNILE-------------------------V------- 126 (495)
Q Consensus 80 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~-------------------------l------- 126 (495)
+|.+++.+|..|+++++|++|++++|.+.+.+|.. +..+++|++|+ +
T Consensus 303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~ 382 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382 (768)
T ss_dssp SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEE
T ss_pred CCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCC
Confidence 55555555555555555555555555554444443 44444454444 4
Q ss_pred -ecccccC--CCCCCEEEccccccccCCCccCcc-cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccc
Q 041558 127 -LPLSVSN--LTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEAL 202 (495)
Q Consensus 127 -~~~~l~~--~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 202 (495)
+|..+.. +++|++|++++|.+++.+|..+.. ++|++|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+
T Consensus 383 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 462 (768)
T 3rgz_A 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462 (768)
T ss_dssp ECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred CcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 2333333 566777777777777777777766 788888888888888888888888888888888888888888888
Q ss_pred cCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccce
Q 041558 203 GIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIK 282 (495)
Q Consensus 203 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 282 (495)
+.+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.
T Consensus 463 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 88889999999999998888888999999999999999999889999999999999999999999999999999999999
Q ss_pred eecccccccccCCccc----------------------------------------------------------------
Q 041558 283 LILRRNQLVGCLPTEI---------------------------------------------------------------- 298 (495)
Q Consensus 283 L~L~~n~l~~~~~~~~---------------------------------------------------------------- 298 (495)
|++++|+++|.+|..+
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 9999999887776543
Q ss_pred ------CCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCC-CCCCCccc-
Q 041558 299 ------GSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL-GPIPNSIA- 370 (495)
Q Consensus 299 ------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l-~~~p~~~~- 370 (495)
..+++|+.|||++|.++|.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.||+++|.+ +.+|....
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 3356789999999999999999999999999999999999999999999999999999999999 88886542
Q ss_pred ccCCChhhccCCcCC
Q 041558 371 FRGASVEALKGNKRL 385 (495)
Q Consensus 371 ~~~~~~~~~~~n~~~ 385 (495)
........+.+|+..
T Consensus 703 l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLS 717 (768)
T ss_dssp CCCCSEEECCSSEEE
T ss_pred CCCCCEEECcCCccc
Confidence 334555556666543
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.4e-48 Score=402.84 Aligned_cols=381 Identities=22% Similarity=0.297 Sum_probs=342.4
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCc----------------------------------------------
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQ---------------------------------------------- 34 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---------------------------------------------- 34 (495)
++.|+|++|+++|.+|++++++++|++|+|++|.
T Consensus 83 V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~ 162 (636)
T 4eco_A 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162 (636)
T ss_dssp EEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHH
Confidence 3579999999999999999999999999999884
Q ss_pred --------------------------------ccccCCcccccCcccceeeccccccccc-----------------CCc
Q 041558 35 --------------------------------FSSSIPLSFGNLSNLIFLYLYENSYFAS-----------------IPS 65 (495)
Q Consensus 35 --------------------------------l~~~~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~ 65 (495)
+++ +|..|+++++|++|+|++|.+++. +|.
T Consensus 163 ~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~ 241 (636)
T 4eco_A 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241 (636)
T ss_dssp HHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch
Confidence 445 788899999999999999999986 999
Q ss_pred ccc--CCCCCCeeeccCCcccccCChhhhcCCCCCEEecCCCc-ccc-cCCccccCC------CCCCEEee-------ec
Q 041558 66 NVG--KLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNK-LFV-SIPNEIGKM------RSLNILEV-------LP 128 (495)
Q Consensus 66 ~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l------~~L~~L~l-------~~ 128 (495)
.++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|++ +|
T Consensus 242 ~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip 321 (636)
T 4eco_A 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFP 321 (636)
T ss_dssp CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCC
T ss_pred hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccC
Confidence 999 99999999999999999999999999999999999998 988 899998887 99999998 78
Q ss_pred c--cccCCCCCCEEEccccccccCCCccCcc-cccccccccccccccccCccCCCCCC-CCEEEccCceeeeccCccccC
Q 041558 129 L--SVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIPKSLRSCTS-LIRLCRNRNNLTRDISEALGI 204 (495)
Q Consensus 129 ~--~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~ 204 (495)
. .++.+++|+.|++++|.++|.+| .+.. ++|++|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~ 398 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDA 398 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCT
T ss_pred chhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhh
Confidence 7 89999999999999999999999 6666 99999999999998 78888999999 999999999999 67777776
Q ss_pred CC--CccEEEccCCcCcccCCCCCC-------CCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCc
Q 041558 205 YP--YLTFIDLSRNNFHGEIPSNRE-------KCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELG 275 (495)
Q Consensus 205 ~~--~L~~L~l~~n~l~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 275 (495)
++ +|++|++++|.+++.+|..+. .+++|+.|++++|.+....+..+..+++|++|++++|.++ .+|....
T Consensus 399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 477 (636)
T 4eco_A 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSL 477 (636)
T ss_dssp TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSS
T ss_pred cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHh
Confidence 55 899999999999999999888 8889999999999999644445667999999999999999 6666433
Q ss_pred c-c-------cccceeecccccccccCCcccC--CCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeC------cCCcCC
Q 041558 276 K-L-------NSLIKLILRRNQLVGCLPTEIG--SPIELEYLDFSVNRFNNLIPESLENLLKLHYLGL------CKNKLV 339 (495)
Q Consensus 276 ~-~-------~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l------~~n~l~ 339 (495)
. . ++|+.|++++|.++ .+|..+. .+++|++|+|++|.+++ +|..+..+++|+.|++ ++|++.
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred ccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccc
Confidence 2 2 39999999999999 7888887 99999999999999998 7889999999999999 567888
Q ss_pred ccchhHhhcCCCCCeEeccCCCCCCCCCcccccCCChhhccCCcCCCCCC
Q 041558 340 QELPKILEKLVQFSELDLSYNFLGPIPNSIAFRGASVEALKGNKRLCVSA 389 (495)
Q Consensus 340 ~~~~~~~~~l~~L~~l~ls~n~l~~~p~~~~~~~~~~~~~~~n~~~c~~~ 389 (495)
+.+|..+..+++|+.|++++|.++.+|.... +......+.+|+..|...
T Consensus 556 ~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQIGSNDIRKVNEKIT-PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCCCBCCSCCC-TTCCEEECCSCTTCEEEC
T ss_pred ccChHHHhcCCCCCEEECCCCcCCccCHhHh-CcCCEEECcCCCCccccH
Confidence 9999999999999999999999999997643 667777788898887543
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-46 Score=389.07 Aligned_cols=386 Identities=19% Similarity=0.172 Sum_probs=306.6
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
+++|++++|.+++..+..|.++++|++|++++|.+++..|.+|+++++|++|+|++|.+.+..|..|+++++|++|++++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence 57899999999888888899999999999999999988888899999999999999998888888899999999999999
Q ss_pred CcccccCChhhhcCCCCCEEecCCCcccc-cCCccccCCCCCCEEee--------ecccccCCCCCC----EEEcccccc
Q 041558 81 NQFISYIPSSFGNLTNLSTSRLSKNKLFV-SIPNEIGKMRSLNILEV--------LPLSVSNLTNPK----ELALLYNCL 147 (495)
Q Consensus 81 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l--------~~~~l~~~~~L~----~L~l~~n~l 147 (495)
|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++ .+..+..+++|+ ++++++|.+
T Consensus 114 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193 (606)
T ss_dssp SCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCC
T ss_pred CccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCc
Confidence 99888777788899999999999998865 57888999999998887 122222222221 333333333
Q ss_pred ccCCCccCc-----------------------------------------------------------------------
Q 041558 148 SGSIPPSLE----------------------------------------------------------------------- 156 (495)
Q Consensus 148 ~~~~~~~~~----------------------------------------------------------------------- 156 (495)
++..+..+.
T Consensus 194 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 273 (606)
T 3vq2_A 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273 (606)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTT
T ss_pred ceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccc
Confidence 222111111
Q ss_pred -------------------------------c-cccccccccccccccccCc--------------------cCCCCCCC
Q 041558 157 -------------------------------N-PMLARLGLDFNHFKRTIPK--------------------SLRSCTSL 184 (495)
Q Consensus 157 -------------------------------~-~~L~~L~l~~n~~~~~~~~--------------------~~~~l~~L 184 (495)
. ++|++|++++|.+ +.+|. .+..+++|
T Consensus 274 ~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L 352 (606)
T 3vq2_A 274 FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSL 352 (606)
T ss_dssp CCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTC
T ss_pred ccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCC
Confidence 1 2334444444433 22221 34466777
Q ss_pred CEEEccCceeeec--cCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCC-ccccCCCCCceecc
Q 041558 185 IRLCRNRNNLTRD--ISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIP-REIRNSSQRQALDL 261 (495)
Q Consensus 185 ~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l 261 (495)
+.|++++|.+++. .+..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+..| ..+..+++|++|++
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence 7888888887766 37778888899999999988874 66888999999999999999998777 67889999999999
Q ss_pred CCCeeeeecCCCCccccccceeecccccccc-cCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCc
Q 041558 262 SLNHIIGEIPKELGKLNSLIKLILRRNQLVG-CLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQ 340 (495)
Q Consensus 262 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 340 (495)
++|.+.+..|..+..+++|+.|++++|.+++ .+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++
T Consensus 432 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 9999998889999999999999999999997 478889999999999999999999989999999999999999999999
Q ss_pred cchhHhhcCCCCCeEeccCCCCCCCCCccc-cc-CCChhhccCCcCCCCC
Q 041558 341 ELPKILEKLVQFSELDLSYNFLGPIPNSIA-FR-GASVEALKGNKRLCVS 388 (495)
Q Consensus 341 ~~~~~~~~l~~L~~l~ls~n~l~~~p~~~~-~~-~~~~~~~~~n~~~c~~ 388 (495)
..|..+..+++|+.|++++|.+..+|.... +. ......+.+|+..|..
T Consensus 512 ~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 512 LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp EEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred cCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCC
Confidence 999999999999999999999988886522 22 3556677889988843
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-45 Score=382.86 Aligned_cols=361 Identities=19% Similarity=0.148 Sum_probs=229.6
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
|++|+|++|.+++..|.+|+++++|++|++++|.+++..|..|+++++|++|++++|.+.+..|..++++++|++|++++
T Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~ 138 (606)
T 3t6q_A 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138 (606)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCS
T ss_pred ceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCC
Confidence 67889999998888888899999999999999998888888888888999999988888876677788888888888888
Q ss_pred CcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCC--EEee--------------------------------
Q 041558 81 NQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLN--ILEV-------------------------------- 126 (495)
Q Consensus 81 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~--~L~l-------------------------------- 126 (495)
|.+++..++.+..+++|++|++++|.+++..|..++.+++|+ .|++
T Consensus 139 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 218 (606)
T 3t6q_A 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI 218 (606)
T ss_dssp SCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHH
T ss_pred CcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHH
Confidence 888774434444578888888888877766666666666666 3332
Q ss_pred ---------------------------------------------------ecccccCCCCCCEEEccccccccCCCccC
Q 041558 127 ---------------------------------------------------LPLSVSNLTNPKELALLYNCLSGSIPPSL 155 (495)
Q Consensus 127 ---------------------------------------------------~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 155 (495)
.+..+..+++|++|++++|.++ .+|..+
T Consensus 219 ~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l 297 (606)
T 3t6q_A 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL 297 (606)
T ss_dssp HHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC
T ss_pred hhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh
Confidence 0122556677888888888776 566666
Q ss_pred cc-cccccccccccccccccCccCCCCCCCCEEEccCceeeeccC-ccccCCCCccEEEccCCcCcccC--CCCCCCCCC
Q 041558 156 EN-PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDIS-EALGIYPYLTFIDLSRNNFHGEI--PSNREKCPK 231 (495)
Q Consensus 156 ~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~ 231 (495)
.. ++|++|++++|.+++..|..+..+++|+.|++++|.+.+.++ ..++.+++|++|++++|.+++.. +..+..+++
T Consensus 298 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~ 377 (606)
T 3t6q_A 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377 (606)
T ss_dssp CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCC
Confidence 55 777777777777776666666666666666666666654333 33555666666666666555443 445555555
Q ss_pred CCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCC-CccccccceeecccccccccCCcccCCCCCCCEEeCC
Q 041558 232 LGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKE-LGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFS 310 (495)
Q Consensus 232 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 310 (495)
|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+++..|..+..+++|++|+++
T Consensus 378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457 (606)
T ss_dssp CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECC
Confidence 555555555555555555555555555555555555443332 4455555555555555554444445555555555555
Q ss_pred CCcCCCC---chhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCC
Q 041558 311 VNRFNNL---IPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL 362 (495)
Q Consensus 311 ~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l 362 (495)
+|.+++. .+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+
T Consensus 458 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp TCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 5544431 112344444444444444444444444444444444444444444
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-46 Score=397.11 Aligned_cols=383 Identities=24% Similarity=0.222 Sum_probs=268.6
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccC-CcccccCcccceeecccccccccCCccccCCCCCCeeecc
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSI-PLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLN 79 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 79 (495)
+++|+|++|.+++..|..|.++++|++|++++|...+.+ |.+|+++++|++|+|++|++.+..|..|.++++|++|+|+
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 578999999999888889999999999999998655444 7788999999999999999888889999999999999999
Q ss_pred CCcccccCChh--hhcCCCCCEEecCCCcccccCC-ccccCCCCCCEEee--------ecccccCC--CC----------
Q 041558 80 GNQFISYIPSS--FGNLTNLSTSRLSKNKLFVSIP-NEIGKMRSLNILEV--------LPLSVSNL--TN---------- 136 (495)
Q Consensus 80 ~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l--------~~~~l~~~--~~---------- 136 (495)
+|.+++.+|.. |.++++|++|++++|.+++..+ ..++++++|+.|++ .+..+..+ ++
T Consensus 106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 99988766654 8889999999999998876654 57888999998887 22222222 33
Q ss_pred --------------------CCEEEccccccccCCCccCc---------------------------------------c
Q 041558 137 --------------------PKELALLYNCLSGSIPPSLE---------------------------------------N 157 (495)
Q Consensus 137 --------------------L~~L~l~~n~l~~~~~~~~~---------------------------------------~ 157 (495)
|+.|++++|.+++..+..+. .
T Consensus 186 l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~ 265 (844)
T 3j0a_A 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLAR 265 (844)
T ss_dssp SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTT
T ss_pred cccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcccc
Confidence 56666666655444332221 1
Q ss_pred cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEec
Q 041558 158 PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGV 237 (495)
Q Consensus 158 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 237 (495)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|+.|++
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 345 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence 35677777777777777777788888888888888888887888888888888888888887777778888888888888
Q ss_pred ccccccccCCccccCCCCCceeccCCCeeeeec------------------CCC----------------------Cccc
Q 041558 238 LMNTITKGIPREIRNSSQRQALDLSLNHIIGEI------------------PKE----------------------LGKL 277 (495)
Q Consensus 238 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~------------------~~~----------------------~~~~ 277 (495)
++|.+.+..+..|..+++|++|++++|.+++.. |.. +..+
T Consensus 346 ~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l 425 (844)
T 3j0a_A 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRV 425 (844)
T ss_dssp CSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTC
T ss_pred CCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcC
Confidence 888887766667777888888888777665310 000 1134
Q ss_pred cccceeeccccccccc------------------------------CCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCC
Q 041558 278 NSLIKLILRRNQLVGC------------------------------LPTEIGSPIELEYLDFSVNRFNNLIPESLENLLK 327 (495)
Q Consensus 278 ~~L~~L~L~~n~l~~~------------------------------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 327 (495)
++|+.|++++|++++. .+..|..+++|+.|+|++|.+++.+|..|..+++
T Consensus 426 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 505 (844)
T 3j0a_A 426 PHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTA 505 (844)
T ss_dssp TTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCS
T ss_pred CccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhh
Confidence 4555555555555422 1223445555666666666666665656666666
Q ss_pred CCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCC-CCCCCcccccCCChhhccCCcCCCC
Q 041558 328 LHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL-GPIPNSIAFRGASVEALKGNKRLCV 387 (495)
Q Consensus 328 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l-~~~p~~~~~~~~~~~~~~~n~~~c~ 387 (495)
|+.|+|++|++++..+..+. ++|+.|++++|.+ +..|.. +.......+.+|+..|.
T Consensus 506 L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 506 LRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICE 562 (844)
T ss_dssp CSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCS
T ss_pred hheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccc
Confidence 66666666666555444443 5566666666666 333322 34455566777888773
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.2e-45 Score=390.13 Aligned_cols=376 Identities=20% Similarity=0.282 Sum_probs=329.6
Q ss_pred cEEEeeCCcccccCCccCcCCccCCeeec-ccCccccc------------------------------------------
Q 041558 2 ALLIIHNNSLSGFIPLNIGNSQFLWGLDL-SNNQFSSS------------------------------------------ 38 (495)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-~~n~l~~~------------------------------------------ 38 (495)
+.|+|++|++.|.+|++|+++++|++|+| ++|.++|.
T Consensus 326 ~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~ 405 (876)
T 4ecn_A 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ 405 (876)
T ss_dssp EEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred EEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHH
Confidence 57999999999999999999999999999 77765443
Q ss_pred ----------------------------------CCcccccCcccceeecccccccc-----------------cCCccc
Q 041558 39 ----------------------------------IPLSFGNLSNLIFLYLYENSYFA-----------------SIPSNV 67 (495)
Q Consensus 39 ----------------------------------~~~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~~ 67 (495)
+|..|+++++|++|+|++|.+++ .+|..+
T Consensus 406 ~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l 485 (876)
T 4ecn_A 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL 485 (876)
T ss_dssp HHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred HHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhh
Confidence 78889999999999999999998 389998
Q ss_pred c--CCCCCCeeeccCCcccccCChhhhcCCCCCEEecCCCc-ccc-cCCccccCCC-------CCCEEee-------ecc
Q 041558 68 G--KLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNK-LFV-SIPNEIGKMR-------SLNILEV-------LPL 129 (495)
Q Consensus 68 ~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l~-------~L~~L~l-------~~~ 129 (495)
+ ++++|++|+|++|.+.+.+|..|.++++|++|++++|+ +++ .+|..++.++ +|+.|++ +|.
T Consensus 486 ~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~ 565 (876)
T 4ecn_A 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA 565 (876)
T ss_dssp CGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred hhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence 7 99999999999999999999999999999999999998 888 8998777665 9999998 787
Q ss_pred --cccCCCCCCEEEccccccccCCCccCcc-cccccccccccccccccCccCCCCCC-CCEEEccCceeeeccCccccCC
Q 041558 130 --SVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIPKSLRSCTS-LIRLCRNRNNLTRDISEALGIY 205 (495)
Q Consensus 130 --~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~ 205 (495)
.+..+++|+.|++++|.++ .+| .+.. ++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..+
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~ 641 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK 641 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred hhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence 8999999999999999999 788 6665 99999999999998 78888999999 999999999998 677888776
Q ss_pred CC--ccEEEccCCcCcccCCCCC---C--CCCCCCEEecccccccccCCcc-ccCCCCCceeccCCCeeeeecCCCCcc-
Q 041558 206 PY--LTFIDLSRNNFHGEIPSNR---E--KCPKLGTLGVLMNTITKGIPRE-IRNSSQRQALDLSLNHIIGEIPKELGK- 276 (495)
Q Consensus 206 ~~--L~~L~l~~n~l~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~- 276 (495)
+. |+.|++++|.+.+.+|... . .+++|+.|++++|.+.. +|.. +..+++|+.|++++|.+. .+|..+..
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~ 719 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMT-SIPENSLKP 719 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSC
T ss_pred ccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCC-ccChHHhcc
Confidence 55 9999999999998766432 2 34589999999999995 5554 458999999999999998 66665433
Q ss_pred -------ccccceeecccccccccCCcccC--CCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcC------CcCCcc
Q 041558 277 -------LNSLIKLILRRNQLVGCLPTEIG--SPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCK------NKLVQE 341 (495)
Q Consensus 277 -------~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~------n~l~~~ 341 (495)
+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |++.+.
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp TTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred ccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccccc
Confidence 349999999999999 7888887 89999999999999998 688899999999999977 788899
Q ss_pred chhHhhcCCCCCeEeccCCCCCCCCCcccccCCChhhccCCcCCC
Q 041558 342 LPKILEKLVQFSELDLSYNFLGPIPNSIAFRGASVEALKGNKRLC 386 (495)
Q Consensus 342 ~~~~~~~l~~L~~l~ls~n~l~~~p~~~~~~~~~~~~~~~n~~~c 386 (495)
+|..+..+++|+.|++++|.++.+|.... +......+.+|+...
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~-~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSNDIRKVDEKLT-PQLYILDIADNPNIS 841 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSCCCBCCSCCC-SSSCEEECCSCTTCE
T ss_pred ChHHHhcCCCCCEEECCCCCCCccCHhhc-CCCCEEECCCCCCCc
Confidence 99999999999999999999999997643 556666666776544
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.8e-45 Score=377.21 Aligned_cols=363 Identities=20% Similarity=0.148 Sum_probs=262.5
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
+++|++++|.+++..|.+|+++++|++|++++|.+++..|.+|+++++|++|++++|.+.+..|..|+++++|++|++++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 114 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc
Confidence 58999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEee--------ecccccCCCCCC--EEEccccccccC
Q 041558 81 NQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEV--------LPLSVSNLTNPK--ELALLYNCLSGS 150 (495)
Q Consensus 81 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l--------~~~~l~~~~~L~--~L~l~~n~l~~~ 150 (495)
|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++ .+..+..+++|+ .|++++|.+.+.
T Consensus 115 n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp SCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred cCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence 9999877888999999999999999998744445555999999998 356678888888 888888887765
Q ss_pred CCccCc--------------------------------------------------------------------------
Q 041558 151 IPPSLE-------------------------------------------------------------------------- 156 (495)
Q Consensus 151 ~~~~~~-------------------------------------------------------------------------- 156 (495)
.|..+.
T Consensus 195 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~ 274 (606)
T 3t6q_A 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274 (606)
T ss_dssp CTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT
T ss_pred ChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh
Confidence 554332
Q ss_pred -c-cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCC-CCCCCCCCC
Q 041558 157 -N-PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPS-NREKCPKLG 233 (495)
Q Consensus 157 -~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~ 233 (495)
. ++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..++.+++|++|++++|.+.+.+|. .+..+++|+
T Consensus 275 ~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred ccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 1 34444444444444 3444455555555555555555555555555555555555555555544333 355666666
Q ss_pred EEecccccccccC--CccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCc-ccCCCCCCCEEeCC
Q 041558 234 TLGVLMNTITKGI--PREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPT-EIGSPIELEYLDFS 310 (495)
Q Consensus 234 ~L~l~~n~l~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls 310 (495)
.|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..+. .+..+++|++|+++
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECC
Confidence 6666666665543 45566666666666666666666666666666777777777766655443 36666777777777
Q ss_pred CCcCCCCchhhhhcCCCCCEEeCcCCcCCcc---chhHhhcCCCCCeEeccCCCCCC
Q 041558 311 VNRFNNLIPESLENLLKLHYLGLCKNKLVQE---LPKILEKLVQFSELDLSYNFLGP 364 (495)
Q Consensus 311 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~l~ls~n~l~~ 364 (495)
+|.+++..|..++.+++|+.|++++|++++. .+..+..+++|+.|++++|.+..
T Consensus 434 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp TCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred CCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 7777666666677777777777777776552 22456667777777777777733
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.6e-45 Score=377.26 Aligned_cols=367 Identities=21% Similarity=0.158 Sum_probs=312.5
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
|++|++++|.+++..|.+|+++++|++|++++|.+++..|..|+++++|++|++++|.+.+..+..++++++|++|++++
T Consensus 58 L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 137 (606)
T 3vq2_A 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCS
T ss_pred CcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCC
Confidence 68999999999988889999999999999999999988899999999999999999999888878899999999999999
Q ss_pred Ccccc-cCChhhhcCCCCCEEecCCCcccccCCccccCCCCCC----EEe------------------------------
Q 041558 81 NQFIS-YIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLN----ILE------------------------------ 125 (495)
Q Consensus 81 n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~----~L~------------------------------ 125 (495)
|.+++ .+|..|+++++|++|++++|++++..|..++.+++|+ .|+
T Consensus 138 n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNS 217 (606)
T ss_dssp SCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC
T ss_pred CcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccc
Confidence 99886 5689999999999999999998776665444333221 111
Q ss_pred --------------------------------------------------------------------------e-----
Q 041558 126 --------------------------------------------------------------------------V----- 126 (495)
Q Consensus 126 --------------------------------------------------------------------------l----- 126 (495)
+
T Consensus 218 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 297 (606)
T 3vq2_A 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297 (606)
T ss_dssp HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC
T ss_pred hhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccc
Confidence 1
Q ss_pred --ecccccCCCCCCEEEccccccccCCCcc--------------------Ccc-cccccccccccccccc--cCccCCCC
Q 041558 127 --LPLSVSNLTNPKELALLYNCLSGSIPPS--------------------LEN-PMLARLGLDFNHFKRT--IPKSLRSC 181 (495)
Q Consensus 127 --~~~~l~~~~~L~~L~l~~n~l~~~~~~~--------------------~~~-~~L~~L~l~~n~~~~~--~~~~~~~l 181 (495)
+| .+..+++|+.|++++|.+ +.+|.. +.. ++|++|++++|.+++. .+..+..+
T Consensus 298 ~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 298 KYLE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375 (606)
T ss_dssp CCCC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred hhhh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccC
Confidence 11 244455667777777766 444421 112 6777888888887765 37888999
Q ss_pred CCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCC-CCCCCCCCCCEEecccccccccCCccccCCCCCceec
Q 041558 182 TSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIP-SNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALD 260 (495)
Q Consensus 182 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 260 (495)
++|+.|++++|.+.+. |..+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus 376 ~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 376 NSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp SCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 9999999999999874 4889999999999999999998877 6899999999999999999999999999999999999
Q ss_pred cCCCeeee-ecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCC
Q 041558 261 LSLNHIIG-EIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLV 339 (495)
Q Consensus 261 ls~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 339 (495)
+++|.+.+ .+|..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|+++
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 99999987 47889999999999999999999988999999999999999999999999999999999999999999997
Q ss_pred ccchhHhhcCC-CCCeEeccCCCCCCCCCcccc
Q 041558 340 QELPKILEKLV-QFSELDLSYNFLGPIPNSIAF 371 (495)
Q Consensus 340 ~~~~~~~~~l~-~L~~l~ls~n~l~~~p~~~~~ 371 (495)
.+|..+..++ +|+.+++++|++.|.+...++
T Consensus 535 -~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~ 566 (606)
T 3vq2_A 535 -TSKGILQHFPKSLAFFNLTNNSVACICEHQKF 566 (606)
T ss_dssp -CEESCGGGSCTTCCEEECCSCCCCCSSTTHHH
T ss_pred -ccCHhHhhhcccCcEEEccCCCcccCCccHHH
Confidence 5666688887 599999999999555544433
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1e-45 Score=384.28 Aligned_cols=346 Identities=18% Similarity=0.262 Sum_probs=311.0
Q ss_pred cccccCCccCcCCccCCeeecccCccccc-----------------CCcccc--cCcccceeecccccccccCCccccCC
Q 041558 10 SLSGFIPLNIGNSQFLWGLDLSNNQFSSS-----------------IPLSFG--NLSNLIFLYLYENSYFASIPSNVGKL 70 (495)
Q Consensus 10 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~l 70 (495)
++++ +|++|+++++|++|+|++|.+++. +|..++ ++++|++|++++|.+.+.+|..|+++
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 5666 899999999999999999999986 999998 99999999999999999999999999
Q ss_pred CCCCeeeccCCc-ccc-cCChhhhcC------CCCCEEecCCCcccccCCc--cccCCCCCCEEee--------eccccc
Q 041558 71 KSLGDLQLNGNQ-FIS-YIPSSFGNL------TNLSTSRLSKNKLFVSIPN--EIGKMRSLNILEV--------LPLSVS 132 (495)
Q Consensus 71 ~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l--------~~~~l~ 132 (495)
++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .++.+++|+.|++ +| .+.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence 999999999998 998 899988887 99999999999998 8999 9999999999998 66 788
Q ss_pred CCCCCCEEEccccccccCCCccCcc-cc-cccccccccccccccCccCCCCC--CCCEEEccCceeeeccCcccc-----
Q 041558 133 NLTNPKELALLYNCLSGSIPPSLEN-PM-LARLGLDFNHFKRTIPKSLRSCT--SLIRLCRNRNNLTRDISEALG----- 203 (495)
Q Consensus 133 ~~~~L~~L~l~~n~l~~~~~~~~~~-~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~----- 203 (495)
.+++|+.|++++|.++ .+|..+.. ++ |++|++++|.++ .+|..+..+. +|+.|++++|.+.+..|..+.
T Consensus 351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence 8899999999999999 78888877 77 999999999998 7888887765 899999999999999999888
Q ss_pred --CCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCcc-ccCCC-------CCceeccCCCeeeeecCCC
Q 041558 204 --IYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPRE-IRNSS-------QRQALDLSLNHIIGEIPKE 273 (495)
Q Consensus 204 --~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~-------~L~~L~ls~n~l~~~~~~~ 273 (495)
.+++|++|++++|.+++..+..+..+++|+.|++++|.++. +|.. +.... +|++|++++|.++ .+|..
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence 78899999999999994434445668999999999999995 5543 43332 9999999999999 78888
Q ss_pred Cc--cccccceeecccccccccCCcccCCCCCCCEEeC------CCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhH
Q 041558 274 LG--KLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDF------SVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKI 345 (495)
Q Consensus 274 ~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 345 (495)
+. .+++|+.|+|++|++++ +|..+..+++|++|+| ++|.+.+.+|..+..+++|+.|++++|++ +.+|..
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK 584 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence 76 99999999999999997 8999999999999999 56888899999999999999999999999 777876
Q ss_pred hhcCCCCCeEeccCCCCCCCC
Q 041558 346 LEKLVQFSELDLSYNFLGPIP 366 (495)
Q Consensus 346 ~~~l~~L~~l~ls~n~l~~~p 366 (495)
+. ++|+.|++++|++.++.
T Consensus 585 ~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 585 IT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CC--TTCCEEECCSCTTCEEE
T ss_pred Hh--CcCCEEECcCCCCcccc
Confidence 54 79999999999996554
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.2e-44 Score=386.59 Aligned_cols=365 Identities=24% Similarity=0.240 Sum_probs=294.0
Q ss_pred CcEEEeeCCcccccC-CccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCcc--ccCCCCCCeee
Q 041558 1 MALLIIHNNSLSGFI-PLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSN--VGKLKSLGDLQ 77 (495)
Q Consensus 1 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~l~~L~~L~ 77 (495)
|++|+|++|...+.+ |.+|.++++|++|+|++|.+++..|..|+++++|++|+|++|.+.+..|.. |.++++|++|+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 678888888655555 777888888888888888888888888888888888888888888766654 78888888888
Q ss_pred ccCCcccccCC-hhhhcCCCCCEEecCCCcccccCCccccCC--CC------------------------------CCEE
Q 041558 78 LNGNQFISYIP-SSFGNLTNLSTSRLSKNKLFVSIPNEIGKM--RS------------------------------LNIL 124 (495)
Q Consensus 78 l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l--~~------------------------------L~~L 124 (495)
+++|.+++..+ ..|+++++|++|++++|.+++..+..+..+ ++ |+.|
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L 209 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEE
T ss_pred CCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEE
Confidence 88888877544 578888888888888888776666555433 22 4555
Q ss_pred ee--------eccc------------------------------------ccC--CCCCCEEEccccccccCCCccCcc-
Q 041558 125 EV--------LPLS------------------------------------VSN--LTNPKELALLYNCLSGSIPPSLEN- 157 (495)
Q Consensus 125 ~l--------~~~~------------------------------------l~~--~~~L~~L~l~~n~l~~~~~~~~~~- 157 (495)
++ ++.. +.. .++|+.|++++|.+.+..+..+..
T Consensus 210 ~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l 289 (844)
T 3j0a_A 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289 (844)
T ss_dssp BCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC
T ss_pred ecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC
Confidence 54 1111 111 268999999999999888888877
Q ss_pred cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEec
Q 041558 158 PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGV 237 (495)
Q Consensus 158 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 237 (495)
++|+.|++++|.+++..+..|.++++|+.|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 290 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 369 (844)
T 3j0a_A 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369 (844)
T ss_dssp CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEE
T ss_pred CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred ccccccccC------------------Cc----------------------cccCCCCCceeccCCCeeee---------
Q 041558 238 LMNTITKGI------------------PR----------------------EIRNSSQRQALDLSLNHIIG--------- 268 (495)
Q Consensus 238 ~~n~l~~~~------------------~~----------------------~~~~l~~L~~L~ls~n~l~~--------- 268 (495)
++|.+++.. |. .+..+++|++|++++|.+++
T Consensus 370 s~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 449 (844)
T 3j0a_A 370 RDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449 (844)
T ss_dssp ETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred CCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc
Confidence 999876521 00 12245566666666665542
Q ss_pred ---------------------ecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCC
Q 041558 269 ---------------------EIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLK 327 (495)
Q Consensus 269 ---------------------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 327 (495)
..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..+..+. ++
T Consensus 450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~ 527 (844)
T 3j0a_A 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--AN 527 (844)
T ss_dssp CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SC
T ss_pred CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cc
Confidence 2234577889999999999999988888999999999999999999998777666 89
Q ss_pred CCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCCccc
Q 041558 328 LHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNSIA 370 (495)
Q Consensus 328 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~~~~ 370 (495)
|+.|++++|++++..|..+ .+|+.+++++|++.|-+...+
T Consensus 528 L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~ 567 (844)
T 3j0a_A 528 LEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELST 567 (844)
T ss_dssp CCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCS
T ss_pred ccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccHH
Confidence 9999999999999988764 578999999999955554433
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.4e-43 Score=368.60 Aligned_cols=387 Identities=22% Similarity=0.196 Sum_probs=268.5
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccC-----------------
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASI----------------- 63 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~----------------- 63 (495)
|++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+.+..
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 456666666666555556666666666666666666555555555555555555555443322
Q ss_pred ---------Ccc---------------------------------------------------ccCCC--CCCeeeccCC
Q 041558 64 ---------PSN---------------------------------------------------VGKLK--SLGDLQLNGN 81 (495)
Q Consensus 64 ---------~~~---------------------------------------------------~~~l~--~L~~L~l~~n 81 (495)
|.. |.+++ +|++|++++|
T Consensus 179 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n 258 (680)
T 1ziw_A 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258 (680)
T ss_dssp TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS
T ss_pred CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC
Confidence 222 22221 2555555555
Q ss_pred cccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEee-------------ecc----cccCCCCCCEEEccc
Q 041558 82 QFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEV-------------LPL----SVSNLTNPKELALLY 144 (495)
Q Consensus 82 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l-------------~~~----~l~~~~~L~~L~l~~ 144 (495)
.+++..|..|..+++|++|++++|.+.+..|..+..+++|+.|++ +|. .+..+++|++|++++
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence 555555555556666666666666665555555555666665554 111 456677777777777
Q ss_pred cccccCCCccCcc-ccc----------------------------ccccccccccccccCccCCCCCCCCEEEccCceee
Q 041558 145 NCLSGSIPPSLEN-PML----------------------------ARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLT 195 (495)
Q Consensus 145 n~l~~~~~~~~~~-~~L----------------------------~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 195 (495)
|.+++..+..+.. ++| +.|++++|.+++..|..+..+++|+.|++++|.+.
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 7777665554443 444 44444555566666677777888888888888887
Q ss_pred eccC-ccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEeccccccc--ccCCccccCCCCCceeccCCCeeeeecCC
Q 041558 196 RDIS-EALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTIT--KGIPREIRNSSQRQALDLSLNHIIGEIPK 272 (495)
Q Consensus 196 ~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 272 (495)
+.++ ..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|++|++++|.+++..+.
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 6554 67777888888888888877777777777888888888888776 45677888888999999999988877777
Q ss_pred CCccccccceeecccccccccCC--------cccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchh
Q 041558 273 ELGKLNSLIKLILRRNQLVGCLP--------TEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPK 344 (495)
Q Consensus 273 ~~~~~~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 344 (495)
.|..+++|+.|++++|.+++..+ ..|..+++|++|+|++|.++...+..|.++++|+.|++++|++++..+.
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 578 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHh
Confidence 78888899999999998875422 2367888899999999988877666788899999999999999877777
Q ss_pred HhhcCCCCCeEeccCCCCCCCCCcc---cccCCChhhccCCcCCCC
Q 041558 345 ILEKLVQFSELDLSYNFLGPIPNSI---AFRGASVEALKGNKRLCV 387 (495)
Q Consensus 345 ~~~~l~~L~~l~ls~n~l~~~p~~~---~~~~~~~~~~~~n~~~c~ 387 (495)
.+..+++|+.|++++|.+..++... .++......+.+|++.|.
T Consensus 579 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp TTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred HhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 7888899999999999886666432 345666777888998884
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-44 Score=368.18 Aligned_cols=383 Identities=20% Similarity=0.182 Sum_probs=249.8
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
+++|++++|.+++..+.+|.++++|++|++++|++++..+..|+++++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc
Confidence 57899999999988888999999999999999999988888999999999999999999988888999999999999999
Q ss_pred CcccccCChhhhcCCCCCEEecCCCcccc-cCCccccCCCCCCEEee--------ecccccCCCCC----CEEEcccccc
Q 041558 81 NQFISYIPSSFGNLTNLSTSRLSKNKLFV-SIPNEIGKMRSLNILEV--------LPLSVSNLTNP----KELALLYNCL 147 (495)
Q Consensus 81 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l--------~~~~l~~~~~L----~~L~l~~n~l 147 (495)
|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++ .+..+..+++| +.+++++|.+
T Consensus 110 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp SCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred cccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc
Confidence 99988666679999999999999999876 57999999999999988 34556666666 7788887776
Q ss_pred ccCCCccCcc----------------------------------------------------------------------
Q 041558 148 SGSIPPSLEN---------------------------------------------------------------------- 157 (495)
Q Consensus 148 ~~~~~~~~~~---------------------------------------------------------------------- 157 (495)
.+..+..+..
T Consensus 190 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 269 (570)
T 2z63_A 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269 (570)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTE
T ss_pred eecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchh
Confidence 6555544333
Q ss_pred ------------cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccc-------------------cCCC
Q 041558 158 ------------PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEAL-------------------GIYP 206 (495)
Q Consensus 158 ------------~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-------------------~~~~ 206 (495)
++|+.|++++|.++ .+|..+..+ +|+.|++++|.+.......+ ..++
T Consensus 270 ~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 270 YLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp EESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence 34444555444444 234333333 33333333333331111000 2334
Q ss_pred CccEEEccCCcCcccC--CCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecC-CCCcccccccee
Q 041558 207 YLTFIDLSRNNFHGEI--PSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIP-KELGKLNSLIKL 283 (495)
Q Consensus 207 ~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L 283 (495)
+|++|++++|.+++.. |..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|+.|
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 4444444444444321 33344445555555555555443222 5555666666666666654443 345566666666
Q ss_pred ecccccccccCCcccCCCCCCCEEeCCCCcCC-CCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCC
Q 041558 284 ILRRNQLVGCLPTEIGSPIELEYLDFSVNRFN-NLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL 362 (495)
Q Consensus 284 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l 362 (495)
++++|.+++..|..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 66666666556666666666666666666665 34555666666666666666666665566666666666666666666
Q ss_pred CCCCCcc--cccCCChhhccCCcCCC
Q 041558 363 GPIPNSI--AFRGASVEALKGNKRLC 386 (495)
Q Consensus 363 ~~~p~~~--~~~~~~~~~~~~n~~~c 386 (495)
..+|... .........+.+|+..|
T Consensus 507 ~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 507 KSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCHHHhhcccCCcEEEecCCcccC
Confidence 4443221 22334444455555555
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.4e-43 Score=368.04 Aligned_cols=372 Identities=21% Similarity=0.190 Sum_probs=329.8
Q ss_pred CcEEEeeCCcccccCCccCcCCcc--CCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeec
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQF--LWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQL 78 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 78 (495)
|++|++++|.+++..|..|.+++. |++|++++|.+++..|..|+.+++|++|++++|.+.+..|..|.++++|++|++
T Consensus 224 L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (680)
T 1ziw_A 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303 (680)
T ss_dssp CCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEEC
T ss_pred ccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEec
Confidence 578999999999999999998866 999999999999988999999999999999999999999999999999999999
Q ss_pred cCCcccc-----cCCh----hhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeee---------c-cccc--CCCCC
Q 041558 79 NGNQFIS-----YIPS----SFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVL---------P-LSVS--NLTNP 137 (495)
Q Consensus 79 ~~n~l~~-----~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~---------~-~~l~--~~~~L 137 (495)
++|...+ .+|. .|..+++|++|++++|.+.+..+..+..+++|++|++- + ..+. ..++|
T Consensus 304 ~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L 383 (680)
T 1ziw_A 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383 (680)
T ss_dssp TTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC
T ss_pred cchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcC
Confidence 9876543 2332 78899999999999999998888899999999999871 1 1122 23589
Q ss_pred CEEEccccccccCCCccCcc-cccccccccccccccccC-ccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccC
Q 041558 138 KELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIP-KSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSR 215 (495)
Q Consensus 138 ~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 215 (495)
+.|++++|.+++..|..+.. ++|+.|++++|.+++.++ ..+.++++|+.|++++|++.+..+..|..+++|+.|++++
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 463 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence 99999999999998888877 999999999999987666 6899999999999999999999999999999999999999
Q ss_pred CcCc--ccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecC--------CCCccccccceeec
Q 041558 216 NNFH--GEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIP--------KELGKLNSLIKLIL 285 (495)
Q Consensus 216 n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~--------~~~~~~~~L~~L~L 285 (495)
|.+. +.+|..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+ ..+..+++|+.|++
T Consensus 464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp SCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred ccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence 9987 5688999999999999999999999888889999999999999999985422 23788999999999
Q ss_pred ccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhh-cCCCCCeEeccCCCCCC
Q 041558 286 RRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILE-KLVQFSELDLSYNFLGP 364 (495)
Q Consensus 286 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~l~ls~n~l~~ 364 (495)
++|+++...+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++++..+..+. .+++|+.+++++|++.|
T Consensus 544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 99999955555799999999999999999998888899999999999999999999888887 78999999999999955
Q ss_pred CCCc-cccc
Q 041558 365 IPNS-IAFR 372 (495)
Q Consensus 365 ~p~~-~~~~ 372 (495)
.+.. .|+.
T Consensus 624 ~c~~~~~~~ 632 (680)
T 1ziw_A 624 TCESIAWFV 632 (680)
T ss_dssp CCCCCSSEE
T ss_pred CCccHHHHH
Confidence 5543 4444
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-43 Score=355.76 Aligned_cols=363 Identities=22% Similarity=0.173 Sum_probs=280.4
Q ss_pred EEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccC-CccccCCCCCCeeeccCCc
Q 041558 4 LIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASI-PSNVGKLKSLGDLQLNGNQ 82 (495)
Q Consensus 4 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~ 82 (495)
++.+++.++ .+|. +. ++|++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.
T Consensus 15 ~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 15 AICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp EECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 444555554 3444 22 55666666666666666666666666666666666655333 3456666666666666666
Q ss_pred ccccCChhhhcCCCCCEEecCCCcccccCCcc--ccCCCCCCEEee--------eccc-ccCCCCCCEEEccccccccCC
Q 041558 83 FISYIPSSFGNLTNLSTSRLSKNKLFVSIPNE--IGKMRSLNILEV--------LPLS-VSNLTNPKELALLYNCLSGSI 151 (495)
Q Consensus 83 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~l--------~~~~-l~~~~~L~~L~l~~n~l~~~~ 151 (495)
+++..|..|.++++|++|++++|.+++.++.. +..+++|++|++ .|.. +..+++|++|++++|.+.+..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 66655666666666666666666665544433 566666666665 2333 677889999999999999888
Q ss_pred CccCcc---cccccccccccccccccCcc--------CCCCCCCCEEEccCceeeeccCccccCC---CCccEEEccCCc
Q 041558 152 PPSLEN---PMLARLGLDFNHFKRTIPKS--------LRSCTSLIRLCRNRNNLTRDISEALGIY---PYLTFIDLSRNN 217 (495)
Q Consensus 152 ~~~~~~---~~L~~L~l~~n~~~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~L~~L~l~~n~ 217 (495)
+..+.. .+++.+++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+... ++|+.|++++|.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 887765 78999999999987655443 3467899999999999998887766544 889999999886
Q ss_pred CcccC----------CCCCC--CCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeec
Q 041558 218 FHGEI----------PSNRE--KCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLIL 285 (495)
Q Consensus 218 l~~~~----------~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L 285 (495)
..+.. +..+. ..++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..|..+++|+.|++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 330 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence 55321 11222 2368999999999999999999999999999999999999888989999999999999
Q ss_pred ccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCC-CC
Q 041558 286 RRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL-GP 364 (495)
Q Consensus 286 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l-~~ 364 (495)
++|.+++..|..|..+++|++|+|++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++ +.
T Consensus 331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 99999988889999999999999999999999899999999999999999999988778889999999999999999 66
Q ss_pred CCCccc
Q 041558 365 IPNSIA 370 (495)
Q Consensus 365 ~p~~~~ 370 (495)
+|...+
T Consensus 411 ~~~~~~ 416 (455)
T 3v47_A 411 CPRIDY 416 (455)
T ss_dssp TTTTHH
T ss_pred CCcchH
Confidence 664433
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-43 Score=364.60 Aligned_cols=364 Identities=22% Similarity=0.195 Sum_probs=302.5
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
|++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|++.+..+..++++++|++|++++
T Consensus 54 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 133 (570)
T 2z63_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS
T ss_pred ceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCC
Confidence 68999999999988888899999999999999999988888999999999999999998877666789999999999999
Q ss_pred Ccccc-cCChhhhcCCCCCEEecCCCcccccCCccccCCCCC----CEEee-----------------------------
Q 041558 81 NQFIS-YIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSL----NILEV----------------------------- 126 (495)
Q Consensus 81 n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L----~~L~l----------------------------- 126 (495)
|.+++ .+|..|+++++|++|++++|.+++..+..++.+++| +.+++
T Consensus 134 n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~ 213 (570)
T 2z63_A 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS 213 (570)
T ss_dssp SCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC
T ss_pred CccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccccc
Confidence 99887 468889999999999999998876655555544444 22222
Q ss_pred ------------------------------------------------------------ecccccCCCCCCEEEccccc
Q 041558 127 ------------------------------------------------------------LPLSVSNLTNPKELALLYNC 146 (495)
Q Consensus 127 ------------------------------------------------------------~~~~l~~~~~L~~L~l~~n~ 146 (495)
++..+..+++|+.|++++|.
T Consensus 214 ~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 293 (570)
T 2z63_A 214 LNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293 (570)
T ss_dssp TTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE
T ss_pred ccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc
Confidence 12234445677777777776
Q ss_pred cccCCCccCcc---------------------cccccccccccccccccCccCCCCCCCCEEEccCceeeecc--Ccccc
Q 041558 147 LSGSIPPSLEN---------------------PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDI--SEALG 203 (495)
Q Consensus 147 l~~~~~~~~~~---------------------~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~ 203 (495)
+. .+|..+.. ++|+.|++++|.+.+..+. ..+++|+.|++++|.+++.. +..+.
T Consensus 294 l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~ 370 (570)
T 2z63_A 294 IE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF 370 (570)
T ss_dssp EC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred ch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccccccccc
Confidence 65 34443332 4444445544444433332 67889999999999998765 77888
Q ss_pred CCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCC-ccccCCCCCceeccCCCeeeeecCCCCccccccce
Q 041558 204 IYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIP-REIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIK 282 (495)
Q Consensus 204 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~ 282 (495)
.+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|+.
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 449 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred ccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence 999999999999999865554 8999999999999999998766 57889999999999999999889999999999999
Q ss_pred eeccccccc-ccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCC
Q 041558 283 LILRRNQLV-GCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNF 361 (495)
Q Consensus 283 L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~ 361 (495)
|++++|.++ +.+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.+++++|+
T Consensus 450 L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 999999998 5789999999999999999999999989999999999999999999999888889999999999999999
Q ss_pred C-CCCCCc
Q 041558 362 L-GPIPNS 368 (495)
Q Consensus 362 l-~~~p~~ 368 (495)
+ +.+|..
T Consensus 530 ~~~~~~~~ 537 (570)
T 2z63_A 530 WDCSCPRI 537 (570)
T ss_dssp BCCCTTTT
T ss_pred ccCCCcch
Confidence 9 555543
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.1e-44 Score=375.69 Aligned_cols=346 Identities=20% Similarity=0.248 Sum_probs=304.9
Q ss_pred CcccccCCccCcCCccCCeeecccCcccc-----------------cCCcccc--cCcccceeecccccccccCCccccC
Q 041558 9 NSLSGFIPLNIGNSQFLWGLDLSNNQFSS-----------------SIPLSFG--NLSNLIFLYLYENSYFASIPSNVGK 69 (495)
Q Consensus 9 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~ 69 (495)
|.+++ +|..|+++++|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..|++
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 34444 89999999999999999999998 3888877 9999999999999999999999999
Q ss_pred CCCCCeeeccCCc-ccc-cCChhhhcCC-------CCCEEecCCCcccccCCc--cccCCCCCCEEee-------ecccc
Q 041558 70 LKSLGDLQLNGNQ-FIS-YIPSSFGNLT-------NLSTSRLSKNKLFVSIPN--EIGKMRSLNILEV-------LPLSV 131 (495)
Q Consensus 70 l~~L~~L~l~~n~-l~~-~~~~~~~~l~-------~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l-------~~~~l 131 (495)
+++|++|++++|+ +++ .+|..+..++ +|++|++++|.++ .+|. .++.+++|+.|++ +| .+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~ 591 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AF 591 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hh
Confidence 9999999999998 888 8888877766 9999999999998 8999 9999999999998 67 88
Q ss_pred cCCCCCCEEEccccccccCCCccCcc-cc-cccccccccccccccCccCCCCCC--CCEEEccCceeeeccCccc---c-
Q 041558 132 SNLTNPKELALLYNCLSGSIPPSLEN-PM-LARLGLDFNHFKRTIPKSLRSCTS--LIRLCRNRNNLTRDISEAL---G- 203 (495)
Q Consensus 132 ~~~~~L~~L~l~~n~l~~~~~~~~~~-~~-L~~L~l~~n~~~~~~~~~~~~l~~--L~~L~l~~n~~~~~~~~~~---~- 203 (495)
+.+++|+.|++++|.++ .+|..+.. ++ |+.|++++|.++ .+|..+..++. |+.|++++|.+.+.+|... .
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 99999999999999999 88888877 77 999999999998 78888877754 9999999999998766432 2
Q ss_pred -CCCCccEEEccCCcCcccCCCCC-CCCCCCCEEecccccccccCCccccC--------CCCCceeccCCCeeeeecCCC
Q 041558 204 -IYPYLTFIDLSRNNFHGEIPSNR-EKCPKLGTLGVLMNTITKGIPREIRN--------SSQRQALDLSLNHIIGEIPKE 273 (495)
Q Consensus 204 -~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~ls~n~l~~~~~~~ 273 (495)
.+++|+.|++++|.++ .+|..+ ..+++|+.|++++|.+.. +|..+.. +++|+.|+|++|.++ .+|..
T Consensus 670 ~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~ 746 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDD 746 (876)
T ss_dssp CCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGG
T ss_pred ccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc-cchHH
Confidence 3458999999999999 566554 478999999999999994 5554433 238999999999998 78888
Q ss_pred Cc--cccccceeecccccccccCCcccCCCCCCCEEeCCC------CcCCCCchhhhhcCCCCCEEeCcCCcCCccchhH
Q 041558 274 LG--KLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSV------NRFNNLIPESLENLLKLHYLGLCKNKLVQELPKI 345 (495)
Q Consensus 274 ~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 345 (495)
+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |.+.+.+|..+..+++|+.|+|++|++ +.+|..
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 87 89999999999999996 788899999999999976 888899999999999999999999999 778877
Q ss_pred hhcCCCCCeEeccCCCCCCCC
Q 041558 346 LEKLVQFSELDLSYNFLGPIP 366 (495)
Q Consensus 346 ~~~l~~L~~l~ls~n~l~~~p 366 (495)
+. ++|+.||+++|++..+.
T Consensus 825 l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 825 LT--PQLYILDIADNPNISID 843 (876)
T ss_dssp CC--SSSCEEECCSCTTCEEE
T ss_pred hc--CCCCEEECCCCCCCccC
Confidence 54 69999999999995554
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.4e-43 Score=356.95 Aligned_cols=354 Identities=21% Similarity=0.179 Sum_probs=237.1
Q ss_pred cEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCC
Q 041558 2 ALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGN 81 (495)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 81 (495)
++|++++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++.+..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57899999998 5787776 88999999999998777788999999999999999988888888999999999999999
Q ss_pred cccccCChhhhcCCCCCEEecCCCcccc-cCCccccCCCCCCEEee-----ecccccCCCCC--CEEEcccccc--ccCC
Q 041558 82 QFISYIPSSFGNLTNLSTSRLSKNKLFV-SIPNEIGKMRSLNILEV-----LPLSVSNLTNP--KELALLYNCL--SGSI 151 (495)
Q Consensus 82 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l-----~~~~l~~~~~L--~~L~l~~n~l--~~~~ 151 (495)
++++ +|.. .+++|++|++++|.+++ .+|..++.+++|++|++ ....+..+++| +.|++++|.+ .+..
T Consensus 80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccc
Confidence 9885 5555 78999999999999876 57888999999999988 22456667777 8888888887 5555
Q ss_pred CccCcc---------------------------c----------------------------------------------
Q 041558 152 PPSLEN---------------------------P---------------------------------------------- 158 (495)
Q Consensus 152 ~~~~~~---------------------------~---------------------------------------------- 158 (495)
|..+.. +
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 236 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH
Confidence 443322 2
Q ss_pred -----------ccccccccccccccccCccC-----CCCCCCCEEEccCceeeeccC-cc--------------------
Q 041558 159 -----------MLARLGLDFNHFKRTIPKSL-----RSCTSLIRLCRNRNNLTRDIS-EA-------------------- 201 (495)
Q Consensus 159 -----------~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~-------------------- 201 (495)
+|++|++++|.+++.+|..+ ..+++|+.+++++|.+ .+| ..
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l 314 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM 314 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc
Confidence 44555555555555555555 4455544444444444 111 10
Q ss_pred -----ccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccc--cCCccccCCCCCceeccCCCeeeeecCC-C
Q 041558 202 -----LGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITK--GIPREIRNSSQRQALDLSLNHIIGEIPK-E 273 (495)
Q Consensus 202 -----~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~ 273 (495)
+..+++|++|++++|.+++.+|..+..+++|+.|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|. .
T Consensus 315 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 1455666666666666665566666666666666666666664 3445556666666666666666653443 3
Q ss_pred CccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCC
Q 041558 274 LGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFS 353 (495)
Q Consensus 274 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 353 (495)
+..+++|+.|++++|.+++..|..+. ++|++|++++|.++. +|..+..+++|+.|++++|++++..+..+..+++|+
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCCccCHHHhccCCccc
Confidence 55566666666666666655554443 566666666666663 444455666666666666666533223355666666
Q ss_pred eEeccCCCCCCCC
Q 041558 354 ELDLSYNFLGPIP 366 (495)
Q Consensus 354 ~l~ls~n~l~~~p 366 (495)
.+++++|++.|.+
T Consensus 472 ~L~l~~N~~~c~c 484 (520)
T 2z7x_B 472 KIWLHTNPWDCSC 484 (520)
T ss_dssp EEECCSSCBCCCH
T ss_pred EEECcCCCCcccC
Confidence 6666666664433
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.8e-41 Score=351.21 Aligned_cols=390 Identities=19% Similarity=0.131 Sum_probs=290.8
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
+++|+|++|+|++..|.+|.++++|++|||++|+|+++.+++|+++++|++|+|++|++++..+..|.++++|++|++++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence 57899999999987778899999999999999999988888999999999999999999887778899999999999999
Q ss_pred CcccccCChhhhcCCCCCEEecCCCcccc-cCCccccCCCCCCEEee--------ecccccCCC----------------
Q 041558 81 NQFISYIPSSFGNLTNLSTSRLSKNKLFV-SIPNEIGKMRSLNILEV--------LPLSVSNLT---------------- 135 (495)
Q Consensus 81 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l--------~~~~l~~~~---------------- 135 (495)
|++++..+..|+++++|++|++++|.+++ ..|..++.+++|++|++ .+..+..+.
T Consensus 134 N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 134 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 213 (635)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred CcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcc
Confidence 99988777789999999999999999865 46788888999998887 111111110
Q ss_pred -----------CCCEEEccccc----------------------------------------------------------
Q 041558 136 -----------NPKELALLYNC---------------------------------------------------------- 146 (495)
Q Consensus 136 -----------~L~~L~l~~n~---------------------------------------------------------- 146 (495)
.++.+++.+|.
T Consensus 214 ~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~ 293 (635)
T 4g8a_A 214 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 293 (635)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred cccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcc
Confidence 01111111110
Q ss_pred ------------------------cccCCCccCcc-cccccccccccccccccCc-------------------cCCCCC
Q 041558 147 ------------------------LSGSIPPSLEN-PMLARLGLDFNHFKRTIPK-------------------SLRSCT 182 (495)
Q Consensus 147 ------------------------l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~-------------------~~~~l~ 182 (495)
+... + .+.. ..++.|++.+|.+....+. ....++
T Consensus 294 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~ 371 (635)
T 4g8a_A 294 YLDGIIDLFNCLTNVSSFSLVSVTIERV-K-DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 371 (635)
T ss_dssp CEEECTTTTGGGTTCSEEEEESCEEEEC-G-GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT
T ss_pred cccchhhhhhhhcccccccccccccccc-c-ccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc
Confidence 0000 0 0000 2344455554443322111 123456
Q ss_pred CCCEEEccCceeee--c-----------------------cCccccCCCCccEEEccCCcCcccCC-CCCCCCCCCCEEe
Q 041558 183 SLIRLCRNRNNLTR--D-----------------------ISEALGIYPYLTFIDLSRNNFHGEIP-SNREKCPKLGTLG 236 (495)
Q Consensus 183 ~L~~L~l~~n~~~~--~-----------------------~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~ 236 (495)
+|+.++++.|.+.. . .+..+..+++|+.++++.+......+ ..+..+++++.++
T Consensus 372 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence 66777777665532 1 12344556777777777666554433 4567888999999
Q ss_pred cccccccccCCccccCCCCCceeccCCCeee-eecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCC
Q 041558 237 VLMNTITKGIPREIRNSSQRQALDLSLNHII-GEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFN 315 (495)
Q Consensus 237 l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 315 (495)
++.|.+.+..+..+..++.++.|++++|.+. +..|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|+++
T Consensus 452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~ 531 (635)
T 4g8a_A 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531 (635)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCC
Confidence 9999999988888899999999999999754 457888999999999999999999888999999999999999999999
Q ss_pred CCchhhhhcCCCCCEEeCcCCcCCccchhHhhcC-CCCCeEeccCCCCCCCCCcccccCC----ChhhccCCcCCCCCCC
Q 041558 316 NLIPESLENLLKLHYLGLCKNKLVQELPKILEKL-VQFSELDLSYNFLGPIPNSIAFRGA----SVEALKGNKRLCVSAK 390 (495)
Q Consensus 316 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~l~ls~n~l~~~p~~~~~~~~----~~~~~~~n~~~c~~~~ 390 (495)
+..+..|..+++|+.|+|++|++++..|..+..+ ++|+.|++++|++.|-|...+|..+ ...........|..|.
T Consensus 532 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~ 611 (635)
T 4g8a_A 532 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 611 (635)
T ss_dssp BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSST
T ss_pred CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCch
Confidence 9989999999999999999999999999999888 6899999999999777766555322 1111122345687766
Q ss_pred CC
Q 041558 391 GL 392 (495)
Q Consensus 391 ~~ 392 (495)
.+
T Consensus 612 ~~ 613 (635)
T 4g8a_A 612 DK 613 (635)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.6e-42 Score=353.39 Aligned_cols=375 Identities=24% Similarity=0.240 Sum_probs=221.2
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
|++|++++|.+++..|..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+.+..|..|+++++|++|++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 56788888888877777788888888888888888877777788888888888888887776666678888888888888
Q ss_pred Ccccc-cCChhhhcCCCCCEEecCCCcccccCC-ccccCCCCCCEEee--------ecccccC-----------------
Q 041558 81 NQFIS-YIPSSFGNLTNLSTSRLSKNKLFVSIP-NEIGKMRSLNILEV--------LPLSVSN----------------- 133 (495)
Q Consensus 81 n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l--------~~~~l~~----------------- 133 (495)
|.+++ ..|..+.++++|++|++++|.+.+.+| ..+..+++|++|++ .|..+..
T Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 187 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH
T ss_pred CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccccc
Confidence 87775 345677777788888887777444554 46777777777766 3444444
Q ss_pred -------CCCCCEEEccccccccCC--CccCcc--cccccccccccccccccC----ccCCCC-----------------
Q 041558 134 -------LTNPKELALLYNCLSGSI--PPSLEN--PMLARLGLDFNHFKRTIP----KSLRSC----------------- 181 (495)
Q Consensus 134 -------~~~L~~L~l~~n~l~~~~--~~~~~~--~~L~~L~l~~n~~~~~~~----~~~~~l----------------- 181 (495)
+++|+.|++++|.+++.. +..+.. ++|+.|++++|.+++..+ ..+..+
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence 344555555555544421 111110 233333333322221100 001111
Q ss_pred ------------------------------------------CCCCEEEccCceeeeccCccc-cCCCCccEEEccCCcC
Q 041558 182 ------------------------------------------TSLIRLCRNRNNLTRDISEAL-GIYPYLTFIDLSRNNF 218 (495)
Q Consensus 182 ------------------------------------------~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l 218 (495)
.+|+.|++++|.+.. +|..+ ..+++|++|++++|.+
T Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l 346 (549)
T 2z81_A 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLM 346 (549)
T ss_dssp CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCC
T ss_pred cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCcc
Confidence 233444444444432 22222 3566666677776666
Q ss_pred cccCC---CCCCCCCCCCEEecccccccccCC--ccccCCCCCceeccCCCeeeeecCCCCccccccceeeccccccccc
Q 041558 219 HGEIP---SNREKCPKLGTLGVLMNTITKGIP--REIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGC 293 (495)
Q Consensus 219 ~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 293 (495)
++.+| ..++.+++|+.|++++|.+++..+ ..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++ .
T Consensus 347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~ 424 (549)
T 2z81_A 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-V 424 (549)
T ss_dssp CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-C
T ss_pred ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-c
Confidence 65442 335566667777777776665322 34566666777777777666 55666666666777777776665 3
Q ss_pred CCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCCc--ccc
Q 041558 294 LPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNS--IAF 371 (495)
Q Consensus 294 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~~--~~~ 371 (495)
+|..+ .++|++|++++|.+++.+ ..+++|+.|++++|+++ .+|. ...+++|+.|++++|.+..++.. ..+
T Consensus 425 l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 496 (549)
T 2z81_A 425 VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRL 496 (549)
T ss_dssp CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcC
Confidence 33322 245666666666665542 35666666666666665 3443 34566666666666666333322 223
Q ss_pred cCCChhhccCCcCCC
Q 041558 372 RGASVEALKGNKRLC 386 (495)
Q Consensus 372 ~~~~~~~~~~n~~~c 386 (495)
.......+.+|+..|
T Consensus 497 ~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 497 TSLQKIWLHTNPWDC 511 (549)
T ss_dssp TTCCEEECCSSCBCC
T ss_pred cccCEEEecCCCccC
Confidence 344444555565555
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3e-41 Score=338.34 Aligned_cols=360 Identities=20% Similarity=0.178 Sum_probs=301.6
Q ss_pred CCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccC-ChhhhcCCCCCEEecC
Q 041558 25 LWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYI-PSSFGNLTNLSTSRLS 103 (495)
Q Consensus 25 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~ 103 (495)
-+.++.+++.++ .+|. + .++|++|+|++|.+.+..|..|.++++|++|++++|.+.+.+ +..|.++++|++|+++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 456888888888 5665 3 378999999999999988999999999999999999987544 6789999999999999
Q ss_pred CCcccccCCccccCCCCCCEEee--------eccc--ccCCCCCCEEEccccccccCCCcc-Ccc-cccccccccccccc
Q 041558 104 KNKLFVSIPNEIGKMRSLNILEV--------LPLS--VSNLTNPKELALLYNCLSGSIPPS-LEN-PMLARLGLDFNHFK 171 (495)
Q Consensus 104 ~n~~~~~~~~~~~~l~~L~~L~l--------~~~~--l~~~~~L~~L~l~~n~l~~~~~~~-~~~-~~L~~L~l~~n~~~ 171 (495)
+|.+++..|..++.+++|++|++ ++.. +..+++|++|++++|.+++..|.. +.. ++|++|++++|.++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99998888999999999999988 2333 788889999999999988887776 444 88999999999988
Q ss_pred cccCccCCCC--CCCCEEEccCceeeeccCccc--------cCCCCccEEEccCCcCcccCCCCCCC---CCCCCEEecc
Q 041558 172 RTIPKSLRSC--TSLIRLCRNRNNLTRDISEAL--------GIYPYLTFIDLSRNNFHGEIPSNREK---CPKLGTLGVL 238 (495)
Q Consensus 172 ~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~--------~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~~L~l~ 238 (495)
+..+..+..+ .+|+.+++++|.+.+..+..+ ..+++|++|++++|.+++..|..+.. .++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 8888777765 688899999998877655433 35678999999999888776665543 3788899998
Q ss_pred cccccccC----------Ccccc--CCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCE
Q 041558 239 MNTITKGI----------PREIR--NSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEY 306 (495)
Q Consensus 239 ~n~l~~~~----------~~~~~--~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 306 (495)
+|...+.. +..+. ..++|++|++++|.+.+..|..+..+++|+.|++++|.+++..|..|..+++|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 88655421 11222 2368999999999999999999999999999999999999888999999999999
Q ss_pred EeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCCcc--cccCCChhhccCCcC
Q 041558 307 LDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNSI--AFRGASVEALKGNKR 384 (495)
Q Consensus 307 L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~~~--~~~~~~~~~~~~n~~ 384 (495)
|++++|.+++..+..++.+++|+.|++++|++++..|..+..+++|+.|++++|.+..+|... .........+.+|+.
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 999999999998999999999999999999999988999999999999999999997777543 345666777888988
Q ss_pred CCCC
Q 041558 385 LCVS 388 (495)
Q Consensus 385 ~c~~ 388 (495)
.|..
T Consensus 408 ~~~~ 411 (455)
T 3v47_A 408 DCSC 411 (455)
T ss_dssp CCCT
T ss_pred ccCC
Confidence 8854
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.5e-41 Score=345.59 Aligned_cols=356 Identities=20% Similarity=0.189 Sum_probs=266.0
Q ss_pred cEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCC
Q 041558 2 ALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGN 81 (495)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 81 (495)
+++++++|+++ .+|..+. ++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 57899999998 4777664 78999999999999877788999999999999999998888888999999999999999
Q ss_pred cccccCChhhhcCCCCCEEecCCCcccc-cCCccccCCCCCCEEee-----ecccccCCCCC--CEEEcccccc--ccCC
Q 041558 82 QFISYIPSSFGNLTNLSTSRLSKNKLFV-SIPNEIGKMRSLNILEV-----LPLSVSNLTNP--KELALLYNCL--SGSI 151 (495)
Q Consensus 82 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l-----~~~~l~~~~~L--~~L~l~~n~l--~~~~ 151 (495)
+++. +|.. .+++|++|++++|++++ .+|..++++++|++|++ ....+..+++| ++|++++|.+ ++..
T Consensus 111 ~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~ 187 (562)
T 3a79_B 111 RLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGE 187 (562)
T ss_dssp CCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSS
T ss_pred cCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccC
Confidence 9885 5555 78999999999999876 45688999999999988 22345556666 8999998888 5555
Q ss_pred CccCcc---------------------------c----------------------------------------------
Q 041558 152 PPSLEN---------------------------P---------------------------------------------- 158 (495)
Q Consensus 152 ~~~~~~---------------------------~---------------------------------------------- 158 (495)
|..+.. +
T Consensus 188 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 267 (562)
T 3a79_B 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267 (562)
T ss_dssp CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence 544322 1
Q ss_pred ---------ccccccccccccccccCccC-----CCCCC--------------------------CCEEEccCceeeecc
Q 041558 159 ---------MLARLGLDFNHFKRTIPKSL-----RSCTS--------------------------LIRLCRNRNNLTRDI 198 (495)
Q Consensus 159 ---------~L~~L~l~~n~~~~~~~~~~-----~~l~~--------------------------L~~L~l~~n~~~~~~ 198 (495)
+|++|++++|.+++.+|..+ ..++. |+.|++++|.+....
T Consensus 268 ~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~ 347 (562)
T 3a79_B 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347 (562)
T ss_dssp HHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred HHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc
Confidence 45555555555555555544 22222 333333333332111
Q ss_pred CccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEeccccccccc--CCccccCCCCCceeccCCCeeeeecCC-CCc
Q 041558 199 SEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKG--IPREIRNSSQRQALDLSLNHIIGEIPK-ELG 275 (495)
Q Consensus 199 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~ 275 (495)
..+.+++|++|++++|.+++.+|..+..+++|+.|++++|.+++. +|..+..+++|++|++++|.+++.+|. .+.
T Consensus 348 --~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 348 --CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp --CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred --CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 015678888888888888887888888888888888888888872 345678888888888888888874554 477
Q ss_pred cccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeE
Q 041558 276 KLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSEL 355 (495)
Q Consensus 276 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 355 (495)
.+++|+.|++++|.+++.+|..+. ++|++|++++|.++. +|..+..+++|+.|++++|++++..+..+..+++|+.+
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCE
T ss_pred CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEE
Confidence 788888888888888876666543 688888888888885 45555688888888888888875433347888888888
Q ss_pred eccCCCCCCCCCc
Q 041558 356 DLSYNFLGPIPNS 368 (495)
Q Consensus 356 ~ls~n~l~~~p~~ 368 (495)
++++|++.|.+..
T Consensus 503 ~l~~N~~~c~c~~ 515 (562)
T 3a79_B 503 WLHDNPWDCTCPG 515 (562)
T ss_dssp ECCSCCBCCCHHH
T ss_pred EecCCCcCCCcch
Confidence 8888888544433
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.3e-41 Score=349.17 Aligned_cols=355 Identities=23% Similarity=0.235 Sum_probs=286.2
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccc-cCCccccCCCCCCeeecc
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFA-SIPSNVGKLKSLGDLQLN 79 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~ 79 (495)
|++|++++|.+++..|++|+++++|++|++++|.+++..|..|+++++|++|++++|.+.+ ..|..++++++|++|+++
T Consensus 52 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 131 (549)
T 2z81_A 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131 (549)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC
Confidence 6899999999998888999999999999999999998888789999999999999999887 467789999999999999
Q ss_pred CCcccccC-ChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEe------------------------ee-------
Q 041558 80 GNQFISYI-PSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILE------------------------VL------- 127 (495)
Q Consensus 80 ~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~------------------------l~------- 127 (495)
+|.+.+.+ +..|.++++|++|++++|.+++..|..++.+++|++|+ +-
T Consensus 132 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred CCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 99854444 46899999999999999999888888777655554444 30
Q ss_pred ---cc-cccCCCCCCEEEcccccc----------------------------ccCCC---------ccC-----------
Q 041558 128 ---PL-SVSNLTNPKELALLYNCL----------------------------SGSIP---------PSL----------- 155 (495)
Q Consensus 128 ---~~-~l~~~~~L~~L~l~~n~l----------------------------~~~~~---------~~~----------- 155 (495)
+. ....+++|+.|++++|.+ .+... ..+
T Consensus 212 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 291 (549)
T 2z81_A 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291 (549)
T ss_dssp CCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESC
T ss_pred cccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccc
Confidence 10 112234455555544433 32100 000
Q ss_pred ---------------cc-cccccccccccccccccCccC-CCCCCCCEEEccCceeeeccC---ccccCCCCccEEEccC
Q 041558 156 ---------------EN-PMLARLGLDFNHFKRTIPKSL-RSCTSLIRLCRNRNNLTRDIS---EALGIYPYLTFIDLSR 215 (495)
Q Consensus 156 ---------------~~-~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~ 215 (495)
.. ++|++|++++|.+. .+|..+ ..+++|+.|++++|.+.+..| ..++.+++|++|++++
T Consensus 292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~ 370 (549)
T 2z81_A 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370 (549)
T ss_dssp BCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTT
T ss_pred ccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccC
Confidence 00 46777888888876 456555 579999999999999998764 3478899999999999
Q ss_pred CcCcccCC--CCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeeccccccccc
Q 041558 216 NNFHGEIP--SNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGC 293 (495)
Q Consensus 216 n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 293 (495)
|.+++..+ ..+..+++|++|++++|++++ +|..+..+++|++|++++|.++ .+|..+. ++|+.|++++|++++.
T Consensus 371 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N~l~~~ 446 (549)
T 2z81_A 371 NHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLDSF 446 (549)
T ss_dssp SCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSSCCSCC
T ss_pred CcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCCChhhh
Confidence 99985432 457889999999999999985 7888899999999999999997 4554432 6899999999999964
Q ss_pred CCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCC-CCCC
Q 041558 294 LPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL-GPIP 366 (495)
Q Consensus 294 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l-~~~p 366 (495)
+ ..+++|++|++++|.++.+ |. ...+++|+.|++++|++++.+|..+..+++|+.|++++|++ +.+|
T Consensus 447 ~----~~l~~L~~L~Ls~N~l~~i-p~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 447 S----LFLPRLQELYISRNKLKTL-PD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp C----CCCTTCCEEECCSSCCSSC-CC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred c----ccCChhcEEECCCCccCcC-CC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 3 4789999999999999964 54 56799999999999999999999999999999999999999 5554
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-40 Score=335.06 Aligned_cols=320 Identities=22% Similarity=0.168 Sum_probs=237.8
Q ss_pred EEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCc
Q 041558 3 LLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQ 82 (495)
Q Consensus 3 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 82 (495)
.++.++++++ .+|..+. +++++|+|++|++++..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.
T Consensus 15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 5667777777 5776664 578899999999988888888889999999999998888888888889999999999988
Q ss_pred ccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-cccc
Q 041558 83 FISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLA 161 (495)
Q Consensus 83 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~ 161 (495)
+++..+..|.++++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+.. ++|+
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 155 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYM----------------FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLE 155 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTT----------------TTTCTTCCEEEECCTTCCEECTTSSTTCTTCC
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhH----------------ccccccCCEEECCCCccceeChhhccCCCCCC
Confidence 88766667888899999999988887655544 344566777777888777666666665 7777
Q ss_pred cccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEeccccc
Q 041558 162 RLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNT 241 (495)
Q Consensus 162 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 241 (495)
+|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+|.......+|+.|++++|.
T Consensus 156 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 156 QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp EEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred EEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 77777777776555567777777777777777777777777777777777777776666666666556677777777777
Q ss_pred ccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhh
Q 041558 242 ITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPES 321 (495)
Q Consensus 242 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 321 (495)
+++..+..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++|.+++..+..
T Consensus 236 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence 77644455667777777777777777666666777777777777777777666667777777777777777777766666
Q ss_pred hhcCCCCCEEeCcCCcCCcc
Q 041558 322 LENLLKLHYLGLCKNKLVQE 341 (495)
Q Consensus 322 ~~~l~~L~~L~l~~n~l~~~ 341 (495)
|..+++|+.|++++|++...
T Consensus 316 ~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 316 FHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp BSCGGGCCEEECCSSCEECS
T ss_pred cCCCcccCEEEccCCCccCc
Confidence 66777777777777776543
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-39 Score=332.37 Aligned_cols=347 Identities=20% Similarity=0.208 Sum_probs=267.1
Q ss_pred CeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEecCCC
Q 041558 26 WGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKN 105 (495)
Q Consensus 26 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 105 (495)
++||+++|+++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 58999999999 5777665 89999999999999888889999999999999999999988999999999999999999
Q ss_pred cccccCCccccCCCCCCEEee---------ecccccCCCCCCEEEccccccccCCCccCcc-ccc--cccccccccc--c
Q 041558 106 KLFVSIPNEIGKMRSLNILEV---------LPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PML--ARLGLDFNHF--K 171 (495)
Q Consensus 106 ~~~~~~~~~~~~l~~L~~L~l---------~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L--~~L~l~~n~~--~ 171 (495)
+++ .+|.. .+++|++|++ +|..++.+++|++|++++|.+++. .+.. ++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeeccccccc
Confidence 997 67776 8999999998 467899999999999999998863 3333 666 9999999988 6
Q ss_pred cccCccCCCCC---------------------------------------------------------------------
Q 041558 172 RTIPKSLRSCT--------------------------------------------------------------------- 182 (495)
Q Consensus 172 ~~~~~~~~~l~--------------------------------------------------------------------- 182 (495)
+..|..+..+.
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence 66666655532
Q ss_pred --------------CCCEEEccCceeeeccCccc-----cCCCCccEEEccCCcCcccCCC-------------------
Q 041558 183 --------------SLIRLCRNRNNLTRDISEAL-----GIYPYLTFIDLSRNNFHGEIPS------------------- 224 (495)
Q Consensus 183 --------------~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~~------------------- 224 (495)
+|+.|++++|.+++.+|..+ +.+++|+.+++++|.+ .+|.
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence 56777777777776777666 6666666666655554 2220
Q ss_pred ------C-CCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeee--ecCCCCccccccceeecccccccccCC
Q 041558 225 ------N-REKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIG--EIPKELGKLNSLIKLILRRNQLVGCLP 295 (495)
Q Consensus 225 ------~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~ 295 (495)
. +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|.+++.+|
T Consensus 312 n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp SCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred CccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence 0 1567778888888888887777777788888888888888775 445567777888888888888876455
Q ss_pred c-ccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCCc--cccc
Q 041558 296 T-EIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNS--IAFR 372 (495)
Q Consensus 296 ~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~~--~~~~ 372 (495)
. .+..+++|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|.+..+|.. ..+.
T Consensus 392 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 468 (520)
T 2z7x_B 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT 468 (520)
T ss_dssp GCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCC
Confidence 4 367778888888888888776665543 67888888888886 5666666888888888888888777754 1233
Q ss_pred CCChhhccCCcCCC
Q 041558 373 GASVEALKGNKRLC 386 (495)
Q Consensus 373 ~~~~~~~~~n~~~c 386 (495)
......+.+|+..|
T Consensus 469 ~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 469 SLQKIWLHTNPWDC 482 (520)
T ss_dssp TCCEEECCSSCBCC
T ss_pred cccEEECcCCCCcc
Confidence 44455566777666
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8e-39 Score=321.07 Aligned_cols=340 Identities=26% Similarity=0.314 Sum_probs=294.6
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
++.|+++++.++ .+| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|++++
T Consensus 48 l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 48 VTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121 (466)
T ss_dssp CCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred ccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence 578999999998 455 48899999999999999996544 9999999999999999887554 89999999999999
Q ss_pred CcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEee-----ecccccCCCCCCEEEccccccccCCCccC
Q 041558 81 NQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEV-----LPLSVSNLTNPKELALLYNCLSGSIPPSL 155 (495)
Q Consensus 81 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l-----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 155 (495)
|.+++..+ +.++++|++|++++|.+.+ ++ .+..+++|+.|.+ -...+..+++|+.|++++|.+.+. + .+
T Consensus 122 n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-~l 195 (466)
T 1o6v_A 122 NQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-S-VL 195 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-G-GG
T ss_pred CCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-h-hh
Confidence 99987533 8999999999999999864 34 5889999999988 123488899999999999998754 2 34
Q ss_pred cc-cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCE
Q 041558 156 EN-PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGT 234 (495)
Q Consensus 156 ~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 234 (495)
.. ++|+.|++++|.+++..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|+.
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 269 (466)
T 1o6v_A 196 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269 (466)
T ss_dssp GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCE
Confidence 44 999999999999987655 77899999999999999875 468889999999999999986554 888999999
Q ss_pred EecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcC
Q 041558 235 LGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRF 314 (495)
Q Consensus 235 L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 314 (495)
|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..| +..+++|++|++++|.+
T Consensus 270 L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 270 LKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred EECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc
Confidence 9999999998544 8889999999999999986544 7899999999999999997665 77899999999999999
Q ss_pred CCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCCc
Q 041558 315 NNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNS 368 (495)
Q Consensus 315 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~~ 368 (495)
++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++...|..
T Consensus 344 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 344 SDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCBC
T ss_pred CCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCchh
Confidence 986 578999999999999999998887 88999999999999999666643
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.9e-37 Score=323.88 Aligned_cols=375 Identities=23% Similarity=0.196 Sum_probs=294.9
Q ss_pred CcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCC
Q 041558 9 NSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIP 88 (495)
Q Consensus 9 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 88 (495)
.+++ .+|..+. +++++|||++|+|+++.+.+|.++++|++|+|++|++.+..|.+|.++++|++|+|++|++++..+
T Consensus 41 ~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 41 LNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp SCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 3455 5776553 479999999999998888899999999999999999999888999999999999999999999877
Q ss_pred hhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEee---------ecccccCCCCCCEEEccccccccCCCccCcc-c
Q 041558 89 SSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEV---------LPLSVSNLTNPKELALLYNCLSGSIPPSLEN-P 158 (495)
Q Consensus 89 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l---------~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~ 158 (495)
..|.++++|++|++++|++++..+..|+++++|++|++ +|..+..+++|++|++++|.+++..+..+.. .
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 197 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchh
Confidence 88999999999999999998766778999999999998 4677889999999999999988765544322 1
Q ss_pred c---------------------------ccccccccccccc---------------------------------------
Q 041558 159 M---------------------------LARLGLDFNHFKR--------------------------------------- 172 (495)
Q Consensus 159 ~---------------------------L~~L~l~~n~~~~--------------------------------------- 172 (495)
+ ++.+++.+|....
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence 1 1112221111000
Q ss_pred -------------------c----------------------cCccCCCCCCCCEEEccCceeeeccCc-----------
Q 041558 173 -------------------T----------------------IPKSLRSCTSLIRLCRNRNNLTRDISE----------- 200 (495)
Q Consensus 173 -------------------~----------------------~~~~~~~l~~L~~L~l~~n~~~~~~~~----------- 200 (495)
. ....+.....|+.|++.+|.+....+.
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence 0 000122334566677776665443222
Q ss_pred --------cccCCCCccEEEccCCcCccc-------------------------CCCCCCCCCCCCEEecccccccccCC
Q 041558 201 --------ALGIYPYLTFIDLSRNNFHGE-------------------------IPSNREKCPKLGTLGVLMNTITKGIP 247 (495)
Q Consensus 201 --------~~~~~~~L~~L~l~~n~l~~~-------------------------~~~~~~~~~~L~~L~l~~n~l~~~~~ 247 (495)
....+++|+.+++++|.+... .+..+..+++|+.+++..+......+
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccc
Confidence 223467888888888876421 23345667788888888777666544
Q ss_pred -ccccCCCCCceeccCCCeeeeecCCCCccccccceeeccccccc-ccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcC
Q 041558 248 -REIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLV-GCLPTEIGSPIELEYLDFSVNRFNNLIPESLENL 325 (495)
Q Consensus 248 -~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 325 (495)
..+..+.+++.++++.|.+.+..+..+..++.++.|++++|.+. +..|..|..+++|++|+|++|.+++.+|..|+++
T Consensus 438 ~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l 517 (635)
T 4g8a_A 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517 (635)
T ss_dssp SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC
Confidence 45778899999999999999888889999999999999999754 4578889999999999999999999999999999
Q ss_pred CCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCCc-cc-c-cCCChhhccCCcCCC
Q 041558 326 LKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNS-IA-F-RGASVEALKGNKRLC 386 (495)
Q Consensus 326 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~~-~~-~-~~~~~~~~~~n~~~c 386 (495)
++|++|+|++|++++..|..+..+++|+.||+++|.+..++.. .. + .......+.+|++.|
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 9999999999999999999999999999999999999554433 21 1 345566788999999
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.1e-38 Score=318.17 Aligned_cols=301 Identities=20% Similarity=0.110 Sum_probs=273.3
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
+++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+....+..|.++++|++|++++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence 58999999999988889999999999999999999999999999999999999999999887777899999999999999
Q ss_pred CcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-cc
Q 041558 81 NQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PM 159 (495)
Q Consensus 81 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~ 159 (495)
|.+++..+..|.++++|++|++++|.+.+..+.. +..+++|++|++++|.+++..+..+.. ++
T Consensus 114 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----------------~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA----------------FSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS----------------STTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred CccccCChhHccccccCCEEECCCCccceeChhh----------------ccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 9999988999999999999999999987665554 455677888889999988766666666 99
Q ss_pred cccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEeccc
Q 041558 160 LARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLM 239 (495)
Q Consensus 160 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 239 (495)
|+.|++++|.+.+..+..+..+++|+.|++++|...+.++.......+|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 99999999999988888999999999999999988887777776777999999999999955546788999999999999
Q ss_pred ccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCC
Q 041558 240 NTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNL 317 (495)
Q Consensus 240 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 317 (495)
|.+.+..+..|..+++|+.|++++|.+.+..|..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+...
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp SCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 999998888899999999999999999998899999999999999999999987777889999999999999998754
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.1e-38 Score=322.87 Aligned_cols=353 Identities=20% Similarity=0.170 Sum_probs=275.9
Q ss_pred CCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEE
Q 041558 21 NSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTS 100 (495)
Q Consensus 21 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 100 (495)
.+...+++|+++|++++ +|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|+.|.++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 34556899999999994 776554 899999999999998888899999999999999999999889999999999999
Q ss_pred ecCCCcccccCCccccCCCCCCEEee---------ecccccCCCCCCEEEccccccccCCCccCccccc--ccccccccc
Q 041558 101 RLSKNKLFVSIPNEIGKMRSLNILEV---------LPLSVSNLTNPKELALLYNCLSGSIPPSLENPML--ARLGLDFNH 169 (495)
Q Consensus 101 ~l~~n~~~~~~~~~~~~l~~L~~L~l---------~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L--~~L~l~~n~ 169 (495)
++++|+++ .+|.. .+++|++|++ +|..++++++|++|++++|.+++.....+ ++| ++|++++|.
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l--~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV--AHLHLSCILLDLVS 180 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGG--TTSCEEEEEEEESS
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhh--hhceeeEEEeeccc
Confidence 99999996 67776 8999999998 34789999999999999999886433222 455 999999998
Q ss_pred c--ccccCccCCCCC-----------------------------------------------------------------
Q 041558 170 F--KRTIPKSLRSCT----------------------------------------------------------------- 182 (495)
Q Consensus 170 ~--~~~~~~~~~~l~----------------------------------------------------------------- 182 (495)
+ ++..|..+..+.
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 8 666665554432
Q ss_pred ----------------CCCEEEccCceeeeccCccc-----cCC--------------------------CCccEEEccC
Q 041558 183 ----------------SLIRLCRNRNNLTRDISEAL-----GIY--------------------------PYLTFIDLSR 215 (495)
Q Consensus 183 ----------------~L~~L~l~~n~~~~~~~~~~-----~~~--------------------------~~L~~L~l~~ 215 (495)
+|+.|++++|.+.+.+|..+ ..+ .+|++|++++
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEES
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccC
Confidence 55556666666665555444 222 2244455555
Q ss_pred CcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeee--ecCCCCccccccceeeccccccccc
Q 041558 216 NNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIG--EIPKELGKLNSLIKLILRRNQLVGC 293 (495)
Q Consensus 216 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~ 293 (495)
|.+.... ....+++|++|++++|.+++.+|..+..+++|++|++++|.+++ .+|..+..+++|+.|++++|.+++.
T Consensus 341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred CCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 5443111 11678899999999999999888899999999999999999985 3456788899999999999999974
Q ss_pred CCc-ccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCCc--cc
Q 041558 294 LPT-EIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNS--IA 370 (495)
Q Consensus 294 ~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~~--~~ 370 (495)
+|. .+..+++|++|++++|.+++..|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|.+..+|.. ..
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 495 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence 554 578889999999999999876665443 68999999999996 5666666899999999999999888865 23
Q ss_pred ccCCChhhccCCcCCC
Q 041558 371 FRGASVEALKGNKRLC 386 (495)
Q Consensus 371 ~~~~~~~~~~~n~~~c 386 (495)
++......+.+|+..|
T Consensus 496 l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CTTCCCEECCSCCBCC
T ss_pred CCCCCEEEecCCCcCC
Confidence 3445556677888777
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.9e-37 Score=301.84 Aligned_cols=334 Identities=20% Similarity=0.150 Sum_probs=282.8
Q ss_pred CCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEE
Q 041558 21 NSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTS 100 (495)
Q Consensus 21 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 100 (495)
.++++++|++++|.++...+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 46889999999999996666668999999999999999988888899999999999999999998888889999999999
Q ss_pred ecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-cccccccccccccccccCccCC
Q 041558 101 RLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIPKSLR 179 (495)
Q Consensus 101 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~ 179 (495)
++++|.++ .+|.. .+..+++|++|++++|.+++..+..+.. ++|++|++++|.+++. .+.
T Consensus 123 ~L~~n~l~-~l~~~---------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~ 183 (390)
T 3o6n_A 123 VLERNDLS-SLPRG---------------IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLS 183 (390)
T ss_dssp ECCSSCCC-CCCTT---------------TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGG
T ss_pred ECCCCccC-cCCHH---------------HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccc
Confidence 99999886 34432 2456778888899999998887777777 9999999999998764 356
Q ss_pred CCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCcee
Q 041558 180 SCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQAL 259 (495)
Q Consensus 180 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 259 (495)
.+++|+.+++++|.+++. ...++|+.|++++|.+... |.. ..++|+.|++++|.+++. ..+..+++|++|
T Consensus 184 ~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 253 (390)
T 3o6n_A 184 LIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEV 253 (390)
T ss_dssp GCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred cccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEE
Confidence 789999999999988753 3456899999999999854 433 257899999999999873 578899999999
Q ss_pred ccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCC
Q 041558 260 DLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLV 339 (495)
Q Consensus 260 ~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 339 (495)
++++|.+.+..|..+..+++|+.|++++|++++ +|..+..+++|++|++++|.+++. |..+..+++|+.|++++|+++
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp ECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCC
T ss_pred ECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccc
Confidence 999999998889999999999999999999984 566778899999999999999864 667889999999999999997
Q ss_pred ccchhHhhcCCCCCeEeccCCCCCCCCCcccccCCChhhccCCcCCCCC
Q 041558 340 QELPKILEKLVQFSELDLSYNFLGPIPNSIAFRGASVEALKGNKRLCVS 388 (495)
Q Consensus 340 ~~~~~~~~~l~~L~~l~ls~n~l~~~p~~~~~~~~~~~~~~~n~~~c~~ 388 (495)
.. + +..+++|+.|++++|++.+.+...++.......+.++...|..
T Consensus 332 ~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 332 TL-K--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CC-C--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCT
T ss_pred ee-C--chhhccCCEEEcCCCCccchhHHHHHHHHHhhcccccCceecc
Confidence 65 3 6678899999999999965555556666666667777777854
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.4e-37 Score=316.94 Aligned_cols=335 Identities=19% Similarity=0.144 Sum_probs=285.6
Q ss_pred CCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEE
Q 041558 21 NSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTS 100 (495)
Q Consensus 21 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 100 (495)
.+++++.|++++|.+....+..|.++++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46789999999999997777778999999999999999998888899999999999999999999888889999999999
Q ss_pred ecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-cccccccccccccccccCccCC
Q 041558 101 RLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIPKSLR 179 (495)
Q Consensus 101 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~ 179 (495)
++++|.+++ +|.. .++.+++|+.|++++|.+++..|..+.. ++|+.|++++|.+++. .+.
T Consensus 129 ~L~~n~l~~-l~~~---------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~ 189 (597)
T 3oja_B 129 VLERNDLSS-LPRG---------------IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLS 189 (597)
T ss_dssp ECCSSCCCC-CCTT---------------TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGG
T ss_pred EeeCCCCCC-CCHH---------------HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chh
Confidence 999999863 4432 2455678888889999999888887877 9999999999998865 256
Q ss_pred CCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCcee
Q 041558 180 SCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQAL 259 (495)
Q Consensus 180 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 259 (495)
.+++|+.|++++|.+++. ...++|+.|++++|.+....+. + .++|+.|++++|.+++ +..+..+++|+.|
T Consensus 190 ~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L 259 (597)
T 3oja_B 190 LIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEV 259 (597)
T ss_dssp GCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEE
T ss_pred hhhhhhhhhcccCccccc-----cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEE
Confidence 688999999999988753 3456899999999999854333 2 3689999999999988 4778899999999
Q ss_pred ccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCC
Q 041558 260 DLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLV 339 (495)
Q Consensus 260 ~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 339 (495)
++++|.+.+..|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++
T Consensus 260 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp ECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCC
T ss_pred ECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCC
Confidence 999999999999999999999999999999995 67777889999999999999996 5778899999999999999997
Q ss_pred ccchhHhhcCCCCCeEeccCCCCCCCCCcccccCCChhhccCCcCCCCCC
Q 041558 340 QELPKILEKLVQFSELDLSYNFLGPIPNSIAFRGASVEALKGNKRLCVSA 389 (495)
Q Consensus 340 ~~~~~~~~~l~~L~~l~ls~n~l~~~p~~~~~~~~~~~~~~~n~~~c~~~ 389 (495)
+.. +..+++|+.|++++|++.+.+...++..+....+.++...|+.+
T Consensus 338 ~~~---~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 338 TLK---LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CCC---CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCTT
T ss_pred CcC---hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCcc
Confidence 653 56788999999999999554555566777777778888888653
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-36 Score=301.94 Aligned_cols=320 Identities=19% Similarity=0.192 Sum_probs=176.1
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
|++|++++|.+++. | .++.+++|++|++++|++++. | ++.+++|++|++++|.+.+. + ++++++|++|++++
T Consensus 44 L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 44 LTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDT 115 (457)
T ss_dssp CCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCS
T ss_pred CCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCC
Confidence 45666666666643 3 466666666666666666643 2 56666666666666665553 2 56666666666666
Q ss_pred CcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-cc
Q 041558 81 NQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PM 159 (495)
Q Consensus 81 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~ 159 (495)
|++++ +| +..+++|++|++++|++++ ++ ++. +++|++|++++|...+.+ .+.. ++
T Consensus 116 N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~----------------l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 116 NKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSH----------------NTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp SCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTT----------------CTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred CcCCe-ec--CCCCCcCCEEECCCCccce-ec--ccc----------------CCcCCEEECCCCCccccc--ccccCCc
Confidence 66655 23 5666666666666666654 22 344 445555555555333333 1222 55
Q ss_pred cccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEeccc
Q 041558 160 LARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLM 239 (495)
Q Consensus 160 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 239 (495)
|+.|++++|.+++ +| +..+++|+.|++++|.+++. .++.+++|++|++++|++++ +| +..+++|+.|++++
T Consensus 172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 5555555555554 22 45555555555555555543 24455555555555555554 33 44555555555555
Q ss_pred ccccccCCccccCCC-------CCceeccCCCeeeeecCCCCccccccceeecccccccccCCc--------ccCCCCCC
Q 041558 240 NTITKGIPREIRNSS-------QRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPT--------EIGSPIEL 304 (495)
Q Consensus 240 n~l~~~~~~~~~~l~-------~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~~~~l~~L 304 (495)
|.+++..+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. .+..+++|
T Consensus 243 N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL 320 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred CcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence 555554333333332 34455555555444444 34555666666666654444332 23444566
Q ss_pred CEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHh-------------hcCCCCCeEeccCCCC-CCCCCc
Q 041558 305 EYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKIL-------------EKLVQFSELDLSYNFL-GPIPNS 368 (495)
Q Consensus 305 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------~~l~~L~~l~ls~n~l-~~~p~~ 368 (495)
++|++++|.+++. + ++.+++|+.|++++|++++. + .+ ..+..|..+++++|.+ +.+|..
T Consensus 321 ~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l-~-~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 321 VYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF-S-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC-T-TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTT
T ss_pred CEEECCCCccccc-c--cccCCcCcEEECCCCCCCCc-c-ccccccccCCcEEecceeeecCccccccCcEEEEcChh
Confidence 6666666666664 2 56666666666666666542 1 01 1234567778888888 777754
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.2e-36 Score=300.73 Aligned_cols=321 Identities=22% Similarity=0.258 Sum_probs=172.2
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCccc-------------ceeecccccccccCCccc
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNL-------------IFLYLYENSYFASIPSNV 67 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------~~L~L~~n~~~~~~~~~~ 67 (495)
|++|++++|.+ +.+|++|+++++|++|++++|.+++.+|..++++++| ++|++++|.+++ +|..
T Consensus 13 L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~- 89 (454)
T 1jl5_A 13 LQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL- 89 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC-
T ss_pred chhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC-
Confidence 57899999999 7999999999999999999999999999999988875 888888888765 3432
Q ss_pred cCCCCCCeeeccCCcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEee-------ecccccCCCCCCEE
Q 041558 68 GKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEV-------LPLSVSNLTNPKEL 140 (495)
Q Consensus 68 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l-------~~~~l~~~~~L~~L 140 (495)
.++|++|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++ +| .++.+++|++|
T Consensus 90 --~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 90 --PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKII 158 (454)
T ss_dssp --CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred --cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEE
Confidence 3677888888887776 4543 3566667776666643 2221 145666665 44 46666666666
Q ss_pred EccccccccCCCccCcccccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcc
Q 041558 141 ALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHG 220 (495)
Q Consensus 141 ~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 220 (495)
++++|++++ +|... ++|++|++++|.+++ +| .+.++++|+.|++++|.+++. |.. .++|++|++++|.++
T Consensus 159 ~l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 159 DVDNNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILE- 228 (454)
T ss_dssp ECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-
T ss_pred ECCCCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCCcCC-
Confidence 666666654 33322 466666666666654 34 466666666666666666542 211 135555566555555
Q ss_pred cCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccc--cCCcc-
Q 041558 221 EIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVG--CLPTE- 297 (495)
Q Consensus 221 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~- 297 (495)
.+|. ++.+++|+.|++++|.+.+ +|.. .++|++|++++|.+++ +|.. .++|+.|++++|.+++ .+|..
T Consensus 229 ~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L 299 (454)
T 1jl5_A 229 ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNL 299 (454)
T ss_dssp SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTC
T ss_pred cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcC
Confidence 4442 5555555555555555554 2221 2344444444444432 2221 1233333333333332 11110
Q ss_pred ------------cCCC-CCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCC
Q 041558 298 ------------IGSP-IELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL 362 (495)
Q Consensus 298 ------------~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l 362 (495)
+..+ ++|++|++++|.+++. |.. +++|+.|++++|++++ +|. .+++|+.|++++|++
T Consensus 300 ~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~l-p~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 300 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CEEECCSSCCSEECCCCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred CEEECcCCcCCcccCCcCcCCEEECCCCccccc-ccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCC
Confidence 1111 4666666666666653 322 4566777777776653 343 356667777777766
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.6e-36 Score=294.20 Aligned_cols=308 Identities=19% Similarity=0.145 Sum_probs=265.4
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
+++|++++|.++...+..|..+++|++|++++|.+++..+..|+.+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 57899999999865555579999999999999999988888999999999999999999998888999999999999999
Q ss_pred CcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCccccc
Q 041558 81 NQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPML 160 (495)
Q Consensus 81 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L 160 (495)
|.+++..+..|.++++|++|++++|.+.+..|.. +..+++|++|++++|.+++.....+ ++|
T Consensus 127 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------------~~~l~~L~~L~l~~n~l~~~~~~~l--~~L 188 (390)
T 3o6n_A 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT----------------FQATTSLQNLQLSSNRLTHVDLSLI--PSL 188 (390)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT----------------TSSCTTCCEEECCSSCCSBCCGGGC--TTC
T ss_pred CccCcCCHHHhcCCCCCcEEECCCCccCccChhh----------------ccCCCCCCEEECCCCcCCccccccc--ccc
Confidence 9998765566799999999999999997655544 4456778888889998876522221 889
Q ss_pred ccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccc
Q 041558 161 ARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMN 240 (495)
Q Consensus 161 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 240 (495)
+.+++++|.+++. ...++|+.|++++|.+...... ..++|+.|++++|.+++. ..+..+++|+.|++++|
T Consensus 189 ~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 189 FHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp SEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred ceeeccccccccc-----CCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCC
Confidence 9999999988743 3456899999999999876443 357999999999999853 57889999999999999
Q ss_pred cccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchh
Q 041558 241 TITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPE 320 (495)
Q Consensus 241 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 320 (495)
.+.+..|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+++..
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~-- 334 (390)
T 3o6n_A 259 ELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK-- 334 (390)
T ss_dssp CCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--
T ss_pred cCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--
Confidence 9999889999999999999999999984 5667788999999999999999 67777888999999999999998763
Q ss_pred hhhcCCCCCEEeCcCCcCCcc
Q 041558 321 SLENLLKLHYLGLCKNKLVQE 341 (495)
Q Consensus 321 ~~~~l~~L~~L~l~~n~l~~~ 341 (495)
+..+++|+.|++++|++...
T Consensus 335 -~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 335 -LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp -CCTTCCCSEEECCSSCEEHH
T ss_pred -chhhccCCEEEcCCCCccch
Confidence 67889999999999999764
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2e-35 Score=296.40 Aligned_cols=340 Identities=25% Similarity=0.299 Sum_probs=283.7
Q ss_pred cCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCE
Q 041558 20 GNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLST 99 (495)
Q Consensus 20 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 99 (495)
..+++++.|+++++.+.. +| .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+++..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 346899999999999984 55 48899999999999999886544 8999999999999999987544 999999999
Q ss_pred EecCCCcccccCCccccCCCCCCEEee------ecccccCCCCCCEEEccccccccCCCccCcc-ccccccccccccccc
Q 041558 100 SRLSKNKLFVSIPNEIGKMRSLNILEV------LPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKR 172 (495)
Q Consensus 100 L~l~~n~~~~~~~~~~~~l~~L~~L~l------~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~ 172 (495)
|++++|.+.+. +. +..+++|++|++ -...+..+++|+.|+++ |.+.+. +. +.. ++|++|++++|.+++
T Consensus 117 L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~-~~-~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 117 LTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDL-KP-LANLTTLERLDISSNKVSD 191 (466)
T ss_dssp EECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCC-GG-GTTCTTCCEEECCSSCCCC
T ss_pred EECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCc-hh-hccCCCCCEEECcCCcCCC
Confidence 99999998654 33 899999999998 12358889999999996 444433 22 444 999999999999875
Q ss_pred ccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccC
Q 041558 173 TIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRN 252 (495)
Q Consensus 173 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 252 (495)
. ..+..+++|+.|++++|.+.+..+ ++.+++|+.|++++|.+++. +.+..+++|+.|++++|.+.+..+ +..
T Consensus 192 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 192 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 4 358899999999999999988766 77899999999999999853 457889999999999999988554 889
Q ss_pred CCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEe
Q 041558 253 SSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLG 332 (495)
Q Consensus 253 l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 332 (495)
+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..| +..+++|+.|+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 9999999999999986544 8899999999999999996544 7889999999999999998765 78999999999
Q ss_pred CcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCCcccccCCChhhccCCcCCC
Q 041558 333 LCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNSIAFRGASVEALKGNKRLC 386 (495)
Q Consensus 333 l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~~~~~~~~~~~~~~~n~~~c 386 (495)
+++|++++. ..+..+++|+.|++++|++...+....+.......+.+|+...
T Consensus 338 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred CCCCccCCc--hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence 999999876 4688999999999999999444434444455555555665444
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.5e-35 Score=284.47 Aligned_cols=306 Identities=24% Similarity=0.265 Sum_probs=250.9
Q ss_pred CcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCC
Q 041558 19 IGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLS 98 (495)
Q Consensus 19 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 98 (495)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+.. . +.++++|++|++++|.+++. +.+.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccch-h-hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 4577889999999999884 44 4888999999999999877543 3 88899999999999988763 4688999999
Q ss_pred EEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-cccccccccccccccccCcc
Q 041558 99 TSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIPKS 177 (495)
Q Consensus 99 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~ 177 (495)
+|++++|.+.+ ++. +..+++|+.|++++|.....++. +.. ++|++|++++|.+.+..+
T Consensus 114 ~L~l~~n~i~~-~~~-----------------~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-- 172 (347)
T 4fmz_A 114 ELYLNEDNISD-ISP-----------------LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-- 172 (347)
T ss_dssp EEECTTSCCCC-CGG-----------------GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--
T ss_pred EEECcCCcccC-chh-----------------hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--
Confidence 99999998753 222 34567778888888865555544 444 889999999988875443
Q ss_pred CCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCc
Q 041558 178 LRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQ 257 (495)
Q Consensus 178 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 257 (495)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~ 246 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLT 246 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCC
Confidence 7889999999999999886554 7889999999999999885444 7888999999999999987444 88899999
Q ss_pred eeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCc
Q 041558 258 ALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNK 337 (495)
Q Consensus 258 ~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 337 (495)
+|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..++.+++|+.|++++|+
T Consensus 247 ~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 247 WLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred EEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 999999998753 4578899999999999999854 457889999999999999999888999999999999999999
Q ss_pred CCccchhHhhcCCCCCeEeccCCCCC
Q 041558 338 LVQELPKILEKLVQFSELDLSYNFLG 363 (495)
Q Consensus 338 l~~~~~~~~~~l~~L~~l~ls~n~l~ 363 (495)
+++..| +..+++|+.+++++|++.
T Consensus 323 l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 323 ITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCCGG--GGGCTTCSEESSSCC---
T ss_pred cccccC--hhhhhccceeehhhhccc
Confidence 988776 788999999999999873
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.4e-35 Score=283.55 Aligned_cols=300 Identities=24% Similarity=0.294 Sum_probs=255.1
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
|++|++++|.+.. +| .+..+++|++|++++|.+++. +. |.++++|++|++++|.+.. + +.+.++++|++|++++
T Consensus 46 L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 46 ITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNE 119 (347)
T ss_dssp CSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTT
T ss_pred ccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcC
Confidence 6899999999984 45 489999999999999999954 33 9999999999999999876 3 4699999999999999
Q ss_pred CcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-cc
Q 041558 81 NQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PM 159 (495)
Q Consensus 81 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~ 159 (495)
|.+++. +. +..+++|++|++++|.....++. +..+++|+.|++++|.+.+..+ +.. ++
T Consensus 120 n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~-----------------~~~l~~L~~L~l~~~~~~~~~~--~~~l~~ 178 (347)
T 4fmz_A 120 DNISDI-SP-LANLTKMYSLNLGANHNLSDLSP-----------------LSNMTGLNYLTVTESKVKDVTP--IANLTD 178 (347)
T ss_dssp SCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGG-----------------GTTCTTCCEEECCSSCCCCCGG--GGGCTT
T ss_pred CcccCc-hh-hccCCceeEEECCCCCCcccccc-----------------hhhCCCCcEEEecCCCcCCchh--hccCCC
Confidence 999874 33 88999999999999965433322 4567788888889988775443 444 89
Q ss_pred cccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEeccc
Q 041558 160 LARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLM 239 (495)
Q Consensus 160 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 239 (495)
|++|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++
T Consensus 179 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 179 LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252 (347)
T ss_dssp CSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCC
Confidence 9999999999875433 8889999999999999987655 7889999999999999985443 88999999999999
Q ss_pred ccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCch
Q 041558 240 NTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIP 319 (495)
Q Consensus 240 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 319 (495)
|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|
T Consensus 253 n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 253 NQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp SCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred CccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 999873 5688999999999999999854 458889999999999999998888899999999999999999998766
Q ss_pred hhhhcCCCCCEEeCcCCcCC
Q 041558 320 ESLENLLKLHYLGLCKNKLV 339 (495)
Q Consensus 320 ~~~~~l~~L~~L~l~~n~l~ 339 (495)
+..+++|+.|++++|+++
T Consensus 329 --~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 --LASLSKMDSADFANQVIK 346 (347)
T ss_dssp --GGGCTTCSEESSSCC---
T ss_pred --hhhhhccceeehhhhccc
Confidence 889999999999999885
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.9e-35 Score=290.75 Aligned_cols=311 Identities=19% Similarity=0.163 Sum_probs=260.4
Q ss_pred ccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChh
Q 041558 11 LSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSS 90 (495)
Q Consensus 11 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 90 (495)
..+..+..++++++|++|++++|.+++. | .|+.+++|++|++++|.+.+. | ++.+++|++|++++|.+++. +
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--
T ss_pred cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--
Confidence 3344556788899999999999999964 5 699999999999999998874 3 88999999999999999884 3
Q ss_pred hhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-cccccccccccc
Q 041558 91 FGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNH 169 (495)
Q Consensus 91 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~ 169 (495)
++++++|++|++++|++++ +| ++.+++|++|++++|.+++. + +.. ++|++|++++|.
T Consensus 102 ~~~l~~L~~L~L~~N~l~~-l~------------------~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~ 159 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK-LD------------------VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNK 159 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC-CC------------------CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCS
T ss_pred cCCCCcCCEEECCCCcCCe-ec------------------CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCC
Confidence 8899999999999999864 22 34567888999999999874 2 444 899999999996
Q ss_pred cccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCcc
Q 041558 170 FKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPRE 249 (495)
Q Consensus 170 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 249 (495)
..+.+ .+..+++|+.|++++|++++. | ++.+++|+.|++++|.+++. .++.+++|+.|++++|++++ +|
T Consensus 160 ~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-- 228 (457)
T 3bz5_A 160 KITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-- 228 (457)
T ss_dssp CCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--
T ss_pred ccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--
Confidence 65555 488999999999999999985 3 78899999999999999965 48899999999999999999 55
Q ss_pred ccCCCCCceeccCCCeeeeecCCCCcccc-------ccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchh--
Q 041558 250 IRNSSQRQALDLSLNHIIGEIPKELGKLN-------SLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPE-- 320 (495)
Q Consensus 250 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-- 320 (495)
+..+++|+.|++++|.+++..+..+..+. +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|.
T Consensus 229 ~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~ 306 (457)
T 3bz5_A 229 VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA 306 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT
T ss_pred ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC
Confidence 78899999999999999976555555544 56677777777776666 56789999999999987665553
Q ss_pred ------hhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCC
Q 041558 321 ------SLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPN 367 (495)
Q Consensus 321 ------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~ 367 (495)
.+..+++|+.|++++|++++. + +..+++|+.|++++|.+..++.
T Consensus 307 ~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l~~ 356 (457)
T 3bz5_A 307 AGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDFSS 356 (457)
T ss_dssp CCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBCTT
T ss_pred CcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCCccc
Confidence 256678999999999999884 3 8899999999999999966654
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.5e-35 Score=279.50 Aligned_cols=248 Identities=26% Similarity=0.352 Sum_probs=187.2
Q ss_pred ccCCeeecccCcccc--cCCcccccCcccceeeccc-ccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCE
Q 041558 23 QFLWGLDLSNNQFSS--SIPLSFGNLSNLIFLYLYE-NSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLST 99 (495)
Q Consensus 23 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 99 (495)
.+++.|++++|.+++ .+|..|+++++|++|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578888888888888 7888888888888888884 8888888888888888888888888888888888888888888
Q ss_pred EecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-c-ccccccccccccccccCcc
Q 041558 100 SRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-P-MLARLGLDFNHFKRTIPKS 177 (495)
Q Consensus 100 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~-~L~~L~l~~n~~~~~~~~~ 177 (495)
|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+.. + .|++|++++|.+++.+|..
T Consensus 130 L~Ls~N~l~~~~p~~~~~----------------l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~ 193 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISS----------------LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193 (313)
T ss_dssp EECCSSEEESCCCGGGGG----------------CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred EeCCCCccCCcCChHHhc----------------CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence 888888887776665543 456666777777777666666655 3 6777777777777667777
Q ss_pred CCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCc
Q 041558 178 LRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQ 257 (495)
Q Consensus 178 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 257 (495)
+..+. |+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|+
T Consensus 194 ~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 194 FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp GGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred HhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence 76665 77777777777777777777777777777777777655554 56667777777777777766777777777777
Q ss_pred eeccCCCeeeeecCCCCccccccceeeccccc
Q 041558 258 ALDLSLNHIIGEIPKELGKLNSLIKLILRRNQ 289 (495)
Q Consensus 258 ~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~ 289 (495)
+|++++|.+++.+|.. ..+++|+.+++++|+
T Consensus 272 ~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 272 SLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred EEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 7777777777666654 666677777777776
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.1e-34 Score=274.79 Aligned_cols=288 Identities=18% Similarity=0.184 Sum_probs=202.3
Q ss_pred cCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEecC
Q 041558 24 FLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLS 103 (495)
Q Consensus 24 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 103 (495)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5777777777776 4555442 567777777777666666667777777777777777776666677777777777777
Q ss_pred CCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCccCCCCCC
Q 041558 104 KNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTS 183 (495)
Q Consensus 104 ~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 183 (495)
+|.++ .+|..+ . ++|++|++++|.+++..+..+.++++
T Consensus 111 ~n~l~-~l~~~~----------------------------------------~-~~L~~L~l~~n~i~~~~~~~~~~l~~ 148 (332)
T 2ft3_A 111 KNHLV-EIPPNL----------------------------------------P-SSLVELRIHDNRIRKVPKGVFSGLRN 148 (332)
T ss_dssp SSCCC-SCCSSC----------------------------------------C-TTCCEEECCSSCCCCCCSGGGSSCSS
T ss_pred CCcCC-ccCccc----------------------------------------c-ccCCEEECCCCccCccCHhHhCCCcc
Confidence 77664 333321 1 34445555555555444555677777
Q ss_pred CCEEEccCceeee--ccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceecc
Q 041558 184 LIRLCRNRNNLTR--DISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDL 261 (495)
Q Consensus 184 L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 261 (495)
|+.|++++|.++. ..+..+..+ +|++|++++|.+++ +|..+. ++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 149 L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L 224 (332)
T 2ft3_A 149 MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGL 224 (332)
T ss_dssp CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 7777777777753 556666666 78888888888774 555443 67888888888888777777888888888888
Q ss_pred CCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcC------CCCCEEeCcC
Q 041558 262 SLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENL------LKLHYLGLCK 335 (495)
Q Consensus 262 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l------~~L~~L~l~~ 335 (495)
++|.+.+..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|.+++..+..|... +.|+.|++++
T Consensus 225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp CSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred CCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 888887666667788888888888888887 677778888888888888888887766666543 5678888888
Q ss_pred CcCC--ccchhHhhcCCCCCeEeccCCC
Q 041558 336 NKLV--QELPKILEKLVQFSELDLSYNF 361 (495)
Q Consensus 336 n~l~--~~~~~~~~~l~~L~~l~ls~n~ 361 (495)
|++. +..|..+..++.|+.+++++|.
T Consensus 304 N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 304 NPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CcccccccCcccccccchhhhhhccccc
Confidence 8886 5667778888888888888774
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.2e-33 Score=270.60 Aligned_cols=289 Identities=20% Similarity=0.218 Sum_probs=215.8
Q ss_pred cCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEecC
Q 041558 24 FLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLS 103 (495)
Q Consensus 24 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 103 (495)
+++.++++++.++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5677777777666 4454442 466777777777666666667777777777777777766666667777777777777
Q ss_pred CCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCccCCCCCC
Q 041558 104 KNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTS 183 (495)
Q Consensus 104 ~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 183 (495)
+|.++ .+|..+ . ++|++|++++|.+++..+..+.++++
T Consensus 109 ~n~l~-~l~~~~----------------------------------------~-~~L~~L~l~~n~l~~~~~~~~~~l~~ 146 (330)
T 1xku_A 109 KNQLK-ELPEKM----------------------------------------P-KTLQELRVHENEITKVRKSVFNGLNQ 146 (330)
T ss_dssp SSCCS-BCCSSC----------------------------------------C-TTCCEEECCSSCCCBBCHHHHTTCTT
T ss_pred CCcCC-ccChhh----------------------------------------c-ccccEEECCCCcccccCHhHhcCCcc
Confidence 77653 333221 1 34555555566665555566778888
Q ss_pred CCEEEccCceeee--ccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceecc
Q 041558 184 LIRLCRNRNNLTR--DISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDL 261 (495)
Q Consensus 184 L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 261 (495)
|+.|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+. ++|+.|++++|.+++..|..+..+++|++|++
T Consensus 147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 223 (330)
T 1xku_A 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223 (330)
T ss_dssp CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 8888888888853 66778888889999999998888 4555543 78999999999998887888889999999999
Q ss_pred CCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhc------CCCCCEEeCcC
Q 041558 262 SLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLEN------LLKLHYLGLCK 335 (495)
Q Consensus 262 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~l~~ 335 (495)
++|.+++..+..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+..|.. .+.++.+++++
T Consensus 224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~ 302 (330)
T 1xku_A 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302 (330)
T ss_dssp CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeec
Confidence 999998777778888999999999999998 78888888999999999999998887776653 36788999999
Q ss_pred CcCCc--cchhHhhcCCCCCeEeccCCC
Q 041558 336 NKLVQ--ELPKILEKLVQFSELDLSYNF 361 (495)
Q Consensus 336 n~l~~--~~~~~~~~l~~L~~l~ls~n~ 361 (495)
|++.. ..|..+..++.++.+++++|+
T Consensus 303 N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 303 NPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcccccccCccccccccceeEEEecccC
Confidence 98854 456778888899999998874
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.1e-35 Score=276.33 Aligned_cols=231 Identities=27% Similarity=0.340 Sum_probs=135.0
Q ss_pred cccccccccc-cccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEe
Q 041558 158 PMLARLGLDF-NHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLG 236 (495)
Q Consensus 158 ~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 236 (495)
++|++|++++ |.+.+.+|..+.++++|++|++++|.+++..|..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence 3344444442 444444555555555555555555555555555555555555555555555555555555555556666
Q ss_pred cccccccccCCccccCCC-CCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCC
Q 041558 237 VLMNTITKGIPREIRNSS-QRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFN 315 (495)
Q Consensus 237 l~~n~l~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 315 (495)
+++|.+++.+|..+..++ .|++|++++|.+++.+|..+..++ |+.|++++|.+++..|..+..+++|++|++++|.++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 665555555555555555 566666666666655555555554 666666666666555666666666666666666665
Q ss_pred CCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCC-CCCCCcccccCCChhhccCCcCCCCCCC
Q 041558 316 NLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL-GPIPNSIAFRGASVEALKGNKRLCVSAK 390 (495)
Q Consensus 316 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l-~~~p~~~~~~~~~~~~~~~n~~~c~~~~ 390 (495)
+.++. +..+++|+.|++++|++++.+|..+..+++|+.|++++|++ +.+|....++......+.+|+.+|+.|.
T Consensus 235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCC
Confidence 54443 55556666666666666656666666666666666666666 5566555555555666666777776543
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.6e-34 Score=293.39 Aligned_cols=311 Identities=20% Similarity=0.146 Sum_probs=268.4
Q ss_pred cCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEE
Q 041558 45 NLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNIL 124 (495)
Q Consensus 45 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 124 (495)
.+.+++.+++++|.+....+..|.++++|++|++++|.+++..|..|..+++|+.|+|++|.+++..|..
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------- 118 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---------- 118 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT----------
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH----------
Confidence 4678999999999988777777889999999999999999988889999999999999999997765554
Q ss_pred eeecccccCCCCCCEEEccccccccCCCccCcc-cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCcccc
Q 041558 125 EVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALG 203 (495)
Q Consensus 125 ~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 203 (495)
++.+++|+.|++++|.+++..+..+.. ++|+.|++++|.+++..|..+..+++|+.|++++|.+++.. ++
T Consensus 119 ------~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~ 189 (597)
T 3oja_B 119 ------FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LS 189 (597)
T ss_dssp ------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GG
T ss_pred ------HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hh
Confidence 455677888899999999666665666 99999999999999999999999999999999999998763 55
Q ss_pred CCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCcccccccee
Q 041558 204 IYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKL 283 (495)
Q Consensus 204 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 283 (495)
.+++|+.|++++|.+++. ...++|+.|++++|.+....+.. .++|+.|++++|.+++ +..+..+++|+.|
T Consensus 190 ~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L 259 (597)
T 3oja_B 190 LIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEV 259 (597)
T ss_dssp GCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEE
T ss_pred hhhhhhhhhcccCccccc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEE
Confidence 678999999999998853 33468999999999998754333 3689999999999986 3678899999999
Q ss_pred ecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCC
Q 041558 284 ILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLG 363 (495)
Q Consensus 284 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~ 363 (495)
+|++|.+++..|..|..+++|+.|+|++|.+++. |..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+.
T Consensus 260 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337 (597)
T ss_dssp ECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred ECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC
Confidence 9999999999999999999999999999999985 667788999999999999997 57777889999999999999997
Q ss_pred CCCCcccccCCChhhccCCcCCCC
Q 041558 364 PIPNSIAFRGASVEALKGNKRLCV 387 (495)
Q Consensus 364 ~~p~~~~~~~~~~~~~~~n~~~c~ 387 (495)
.+| ...++......+.+|+..|.
T Consensus 338 ~~~-~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 338 TLK-LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCC-CCTTCCCSEEECCSSCEEHH
T ss_pred CcC-hhhcCCCCEEEeeCCCCCCh
Confidence 666 33456667777889988874
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.6e-33 Score=265.91 Aligned_cols=290 Identities=19% Similarity=0.204 Sum_probs=214.7
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
++.++++++.++ .+|..+. +.+++|++++|.+++..+..|+++++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 578899999988 6777664 6899999999999988888999999999999999999998899999999999999999
Q ss_pred CcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCccccc
Q 041558 81 NQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPML 160 (495)
Q Consensus 81 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L 160 (495)
|.++. +|..+. ++|++|++++|.+.+..+..+ ..+++|+.|++++|.+..
T Consensus 110 n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~----------------~~l~~L~~L~l~~n~l~~----------- 159 (330)
T 1xku_A 110 NQLKE-LPEKMP--KTLQELRVHENEITKVRKSVF----------------NGLNQMIVVELGTNPLKS----------- 159 (330)
T ss_dssp SCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHH----------------TTCTTCCEEECCSSCCCG-----------
T ss_pred CcCCc-cChhhc--ccccEEECCCCcccccCHhHh----------------cCCccccEEECCCCcCCc-----------
Confidence 99885 555543 799999999999875444443 445667777777776642
Q ss_pred ccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccc
Q 041558 161 ARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMN 240 (495)
Q Consensus 161 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 240 (495)
.+..+..+.++++|+.|++++|.++.... .+ .++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 160 ----------~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 160 ----------SGIENGAFQGMKKLSYIRIADTNITTIPQ-GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp ----------GGBCTTGGGGCTTCCEEECCSSCCCSCCS-SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred ----------cCcChhhccCCCCcCEEECCCCccccCCc-cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 11233445556666666666666654322 22 256777777777777666666777777777777777
Q ss_pred cccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCC------CCCCCEEeCCCCcC
Q 041558 241 TITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGS------PIELEYLDFSVNRF 314 (495)
Q Consensus 241 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~Ls~n~l 314 (495)
.+.+..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|.. ...++.+++++|.+
T Consensus 227 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence 777766666777777777777777776 66777777777888888888777655555533 36788888988887
Q ss_pred CC--CchhhhhcCCCCCEEeCcCCc
Q 041558 315 NN--LIPESLENLLKLHYLGLCKNK 337 (495)
Q Consensus 315 ~~--~~~~~~~~l~~L~~L~l~~n~ 337 (495)
.. ..|..|..+.+++.+++++|+
T Consensus 306 ~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 306 QYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccCccccccccceeEEEecccC
Confidence 64 566788888889999988874
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.7e-33 Score=267.29 Aligned_cols=289 Identities=20% Similarity=0.176 Sum_probs=215.0
Q ss_pred CcEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 1 MALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
++.++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++.+..|..|.++++|++|++++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 578999999998 6787774 6899999999999988888999999999999999999998899999999999999999
Q ss_pred CcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCccccc
Q 041558 81 NQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPML 160 (495)
Q Consensus 81 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L 160 (495)
|.++. +|..+. ++|++|++++|.+.+..+.. +..+++|+.|++++|.++..
T Consensus 112 n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~----------------~~~l~~L~~L~l~~n~l~~~---------- 162 (332)
T 2ft3_A 112 NHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGV----------------FSGLRNMNCIEMGGNPLENS---------- 162 (332)
T ss_dssp SCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGG----------------GSSCSSCCEEECCSCCCBGG----------
T ss_pred CcCCc-cCcccc--ccCCEEECCCCccCccCHhH----------------hCCCccCCEEECCCCccccC----------
Confidence 99985 555554 89999999999986443333 44566777777888876520
Q ss_pred ccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccc
Q 041558 161 ARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMN 240 (495)
Q Consensus 161 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 240 (495)
+..+..+..+ +|+.|++++|.+++. |..+ .++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 163 -----------~~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 163 -----------GFEPGAFDGL-KLNYLRISEAKLTGI-PKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp -----------GSCTTSSCSC-CCSCCBCCSSBCSSC-CSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred -----------CCCcccccCC-ccCEEECcCCCCCcc-Cccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 1223333334 555555555555442 2222 156777777777777666667777777777777777
Q ss_pred cccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCC------CCCCCEEeCCCCcC
Q 041558 241 TITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGS------PIELEYLDFSVNRF 314 (495)
Q Consensus 241 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~Ls~n~l 314 (495)
.+.+..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|.. ...|+.|++++|.+
T Consensus 228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred cCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 777766667777778888888888777 67777777888888888888887655555543 35688899999988
Q ss_pred C--CCchhhhhcCCCCCEEeCcCCc
Q 041558 315 N--NLIPESLENLLKLHYLGLCKNK 337 (495)
Q Consensus 315 ~--~~~~~~~~~l~~L~~L~l~~n~ 337 (495)
. +..|..|..+++|+.+++++|+
T Consensus 307 ~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 307 PYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccCcccccccchhhhhhccccc
Confidence 7 5677788888999999998874
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.8e-33 Score=275.62 Aligned_cols=333 Identities=26% Similarity=0.336 Sum_probs=232.8
Q ss_pred CccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCC-------------CeeeccCCc
Q 041558 16 PLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSL-------------GDLQLNGNQ 82 (495)
Q Consensus 16 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L-------------~~L~l~~n~ 82 (495)
|+.+ +.++|++|++++|.+ +.+|.+|+++++|++|++++|.+.+.+|..++++.+| ++|++++|.
T Consensus 5 p~~~-~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred cccc-ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 4444 468999999999999 6999999999999999999999999999999988764 999999999
Q ss_pred ccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccc---cCC-CCCCEEEccccccccCCCccCcc-
Q 041558 83 FISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSV---SNL-TNPKELALLYNCLSGSIPPSLEN- 157 (495)
Q Consensus 83 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l---~~~-~~L~~L~l~~n~l~~~~~~~~~~- 157 (495)
+++ +|.. .++|++|++++|.+++ +|.. +++|+.|++-...+ ... ++|++|++++|++++ +| .+..
T Consensus 83 l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 83 LSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp CSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred ccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 887 4442 4789999999999976 7754 37888888822222 222 689999999999986 66 4655
Q ss_pred cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEec
Q 041558 158 PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGV 237 (495)
Q Consensus 158 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 237 (495)
++|++|++++|.+++ +|..+ .+|+.|++++|.+++ +| .++.+++|++|++++|.+++ +|... ++|+.|++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEEC
T ss_pred CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEEC
Confidence 999999999999986 55543 589999999999988 45 58999999999999999985 55433 58999999
Q ss_pred ccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCC
Q 041558 238 LMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNL 317 (495)
Q Consensus 238 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 317 (495)
++|.+. .+| .+..+++|++|++++|.+++ +|.. +++|+.|++++|.+++ +|.. +++|++|++++|.+++.
T Consensus 223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred cCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence 999998 466 48899999999999999984 5543 4789999999999985 5543 36788888888888762
Q ss_pred --chhhhh-------------cC-CCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCCcccccCCChhhccC
Q 041558 318 --IPESLE-------------NL-LKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNSIAFRGASVEALKG 381 (495)
Q Consensus 318 --~~~~~~-------------~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~~~~~~~~~~~~~~~ 381 (495)
.|..+. .+ ++|+.|++++|++++ +|.. +++|+.|++++|.+..+|. .........+.+
T Consensus 293 ~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~--~l~~L~~L~L~~ 366 (454)
T 1jl5_A 293 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE--LPQNLKQLHVEY 366 (454)
T ss_dssp SCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC--CCTTCCEEECCS
T ss_pred cCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc--hhhhccEEECCC
Confidence 222211 12 467777777777755 3432 4677777888877766766 344555555556
Q ss_pred CcCCC
Q 041558 382 NKRLC 386 (495)
Q Consensus 382 n~~~c 386 (495)
|...+
T Consensus 367 N~l~~ 371 (454)
T 1jl5_A 367 NPLRE 371 (454)
T ss_dssp SCCSS
T ss_pred CCCCc
Confidence 65444
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.6e-36 Score=304.59 Aligned_cols=352 Identities=21% Similarity=0.132 Sum_probs=264.0
Q ss_pred CcEEEeeCCcccccCCcc-CcCCccCCeeecccCcccc----cCCcccccCcccceeecccccccccCCcccc-CCC---
Q 041558 1 MALLIIHNNSLSGFIPLN-IGNSQFLWGLDLSNNQFSS----SIPLSFGNLSNLIFLYLYENSYFASIPSNVG-KLK--- 71 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~--- 71 (495)
|++|++++|.++...... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+....+..+. .++
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 84 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 84 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCC
Confidence 478999999987543333 7889999999999999884 3466778889999999999998765444433 454
Q ss_pred -CCCeeeccCCcccc----cCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccc
Q 041558 72 -SLGDLQLNGNQFIS----YIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNC 146 (495)
Q Consensus 72 -~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~ 146 (495)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+... .....++|++|++++|.
T Consensus 85 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~-----------l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 85 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG-----------LLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH-----------HTSTTCCCCEEECTTSC
T ss_pred CceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHH-----------HhcCCCcceEEECCCCC
Confidence 79999999999884 568889999999999999999876544443210 12234578888888888
Q ss_pred cccCC----CccCcc-cccccccccccccccccCccCC-----CCCCCCEEEccCceeeec----cCccccCCCCccEEE
Q 041558 147 LSGSI----PPSLEN-PMLARLGLDFNHFKRTIPKSLR-----SCTSLIRLCRNRNNLTRD----ISEALGIYPYLTFID 212 (495)
Q Consensus 147 l~~~~----~~~~~~-~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~ 212 (495)
+++.. +..+.. ++|++|++++|.++...+..+. ..++|+.|++++|.+++. ++..+..+++|++|+
T Consensus 154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence 77644 333333 7888888888887654443332 356889999999988764 466777788999999
Q ss_pred ccCCcCcccC-----CCCCCCCCCCCEEeccccccccc----CCccccCCCCCceeccCCCeeeeecCCCCcc-----cc
Q 041558 213 LSRNNFHGEI-----PSNREKCPKLGTLGVLMNTITKG----IPREIRNSSQRQALDLSLNHIIGEIPKELGK-----LN 278 (495)
Q Consensus 213 l~~n~l~~~~-----~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-----~~ 278 (495)
+++|.+++.. +..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .+
T Consensus 234 Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~ 313 (461)
T 1z7x_W 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTC
T ss_pred ccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCc
Confidence 9998877532 33344678899999999988774 4666777888999999999886543333322 25
Q ss_pred ccceeeccccccccc----CCcccCCCCCCCEEeCCCCcCCCCchhhhhc-----CCCCCEEeCcCCcCCc----cchhH
Q 041558 279 SLIKLILRRNQLVGC----LPTEIGSPIELEYLDFSVNRFNNLIPESLEN-----LLKLHYLGLCKNKLVQ----ELPKI 345 (495)
Q Consensus 279 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~ 345 (495)
+|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|.+++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 899999999988865 4556667789999999999887765555543 6789999999999875 67888
Q ss_pred hhcCCCCCeEeccCCCCC
Q 041558 346 LEKLVQFSELDLSYNFLG 363 (495)
Q Consensus 346 ~~~l~~L~~l~ls~n~l~ 363 (495)
+..+++|+.|++++|+++
T Consensus 394 l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 394 LLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHCCCCCEEECCSSSCC
T ss_pred HHhCCCccEEECCCCCCC
Confidence 888899999999999874
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=1e-33 Score=284.25 Aligned_cols=149 Identities=18% Similarity=0.116 Sum_probs=95.1
Q ss_pred CCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCcccc-CCCCCceeccCCCeeeeecCCCCccccccceee
Q 041558 206 PYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIR-NSSQRQALDLSLNHIIGEIPKELGKLNSLIKLI 284 (495)
Q Consensus 206 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ 284 (495)
++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++..+ ...+++|+.|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~ 197 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLD 197 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEE
Confidence 4455555555555544444555555555555555555555555543 56666666666666664422 23467777777
Q ss_pred cccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCC-ccchhHhhcCCCCCeEecc
Q 041558 285 LRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLV-QELPKILEKLVQFSELDLS 358 (495)
Q Consensus 285 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~l~ls 358 (495)
|++|.+++. |..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus 198 Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 198 LSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 777777753 3346777778888888887776 4556777788888888888886 5667777777777666664
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=4e-35 Score=294.33 Aligned_cols=350 Identities=16% Similarity=0.062 Sum_probs=272.5
Q ss_pred CcEEEeeCCcccc----cCCccCcCCccCCeeecccCcccccCCccc-ccCc----ccceeecccccccc----cCCccc
Q 041558 1 MALLIIHNNSLSG----FIPLNIGNSQFLWGLDLSNNQFSSSIPLSF-GNLS----NLIFLYLYENSYFA----SIPSNV 67 (495)
Q Consensus 1 L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~----~L~~L~L~~n~~~~----~~~~~~ 67 (495)
|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+ ..++ +|++|++++|.+.. .++..+
T Consensus 30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l 109 (461)
T 1z7x_W 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL 109 (461)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHT
T ss_pred ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHH
Confidence 6899999999875 457778889999999999999986555444 3455 79999999999884 558889
Q ss_pred cCCCCCCeeeccCCcccccCChhhhc-----CCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEc
Q 041558 68 GKLKSLGDLQLNGNQFISYIPSSFGN-----LTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELAL 142 (495)
Q Consensus 68 ~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l 142 (495)
..+++|++|++++|.+++..+..+.. .++|++|++++|.+++..+..+ +..+..+++|++|++
T Consensus 110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l------------~~~l~~~~~L~~L~L 177 (461)
T 1z7x_W 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL------------ASVLRAKPDFKELTV 177 (461)
T ss_dssp TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH------------HHHHHHCTTCCEEEC
T ss_pred ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH------------HHHHhhCCCCCEEEC
Confidence 99999999999999987654444332 5689999999999876443322 234556788899999
Q ss_pred cccccccCCCccCcc------cccccccccccccccc----cCccCCCCCCCCEEEccCceeeecc-----CccccCCCC
Q 041558 143 LYNCLSGSIPPSLEN------PMLARLGLDFNHFKRT----IPKSLRSCTSLIRLCRNRNNLTRDI-----SEALGIYPY 207 (495)
Q Consensus 143 ~~n~l~~~~~~~~~~------~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~~~~ 207 (495)
++|.+++..+..+.. ++|++|++++|.+++. ++..+..+++|+.|++++|.+++.. +..+..+++
T Consensus 178 ~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~ 257 (461)
T 1z7x_W 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSR 257 (461)
T ss_dssp CSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred cCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCC
Confidence 999887654444332 5899999999998763 5677788999999999999987643 333346899
Q ss_pred ccEEEccCCcCccc----CCCCCCCCCCCCEEecccccccccCCcccc-----CCCCCceeccCCCeeeee----cCCCC
Q 041558 208 LTFIDLSRNNFHGE----IPSNREKCPKLGTLGVLMNTITKGIPREIR-----NSSQRQALDLSLNHIIGE----IPKEL 274 (495)
Q Consensus 208 L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~~~----~~~~~ 274 (495)
|++|++++|.+++. ++..+..+++|+.|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+
T Consensus 258 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 337 (461)
T 1z7x_W 258 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred ceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHH
Confidence 99999999999864 566677789999999999999765444433 236999999999998754 45556
Q ss_pred ccccccceeecccccccccCCcccCC-----CCCCCEEeCCCCcCCC----CchhhhhcCCCCCEEeCcCCcCCccchhH
Q 041558 275 GKLNSLIKLILRRNQLVGCLPTEIGS-----PIELEYLDFSVNRFNN----LIPESLENLLKLHYLGLCKNKLVQELPKI 345 (495)
Q Consensus 275 ~~~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 345 (495)
..+++|+.|++++|.+++..+..+.. .++|++|++++|.+++ .++..+..+++|+.|++++|++++.-...
T Consensus 338 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~ 417 (461)
T 1z7x_W 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 417 (461)
T ss_dssp HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHH
T ss_pred hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHH
Confidence 77899999999999998654443332 6799999999999986 67888899999999999999997653333
Q ss_pred hh-----cCCCCCeEeccCCCC
Q 041558 346 LE-----KLVQFSELDLSYNFL 362 (495)
Q Consensus 346 ~~-----~l~~L~~l~ls~n~l 362 (495)
+. ....|+.|++.++.+
T Consensus 418 l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 418 LVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTCCC
T ss_pred HHHHhccCCcchhheeeccccc
Confidence 22 134688888887776
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=4.2e-31 Score=255.24 Aligned_cols=283 Identities=17% Similarity=0.100 Sum_probs=174.0
Q ss_pred cCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCC
Q 041558 18 NIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNL 97 (495)
Q Consensus 18 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 97 (495)
+-..++.....+.+++.++ .+|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|
T Consensus 26 ~~~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 26 ASLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp -CCEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCCCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence 3445666677888888888 5666554 488999999999887777788889999999999999888778888899999
Q ss_pred CEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCcc
Q 041558 98 STSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKS 177 (495)
Q Consensus 98 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 177 (495)
++|++++|++++ +|.. .+..+++|++|++++|.+++..+ ...
T Consensus 103 ~~L~Ls~n~l~~-~~~~---------------~~~~l~~L~~L~L~~n~l~~l~~----------------------~~~ 144 (353)
T 2z80_A 103 EHLDLSYNYLSN-LSSS---------------WFKPLSSLTFLNLLGNPYKTLGE----------------------TSL 144 (353)
T ss_dssp CEEECCSSCCSS-CCHH---------------HHTTCTTCSEEECTTCCCSSSCS----------------------SCS
T ss_pred CEEECCCCcCCc-CCHh---------------HhCCCccCCEEECCCCCCcccCc----------------------hhh
Confidence 999999998864 3322 13345556666666665542111 024
Q ss_pred CCCCCCCCEEEccCc-eeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCC
Q 041558 178 LRSCTSLIRLCRNRN-NLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQR 256 (495)
Q Consensus 178 ~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 256 (495)
+..+++|+.|++++| .+.+..+..|+.+++|++|++++|.+++..|..+..+++|+.|++++|.+....+..+..+++|
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 224 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTE
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccc
Confidence 555666666666666 3555555666666777777777777766666666667777777777776654332333446666
Q ss_pred ceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCC----CchhhhhcCCCCCEEe
Q 041558 257 QALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNN----LIPESLENLLKLHYLG 332 (495)
Q Consensus 257 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~ 332 (495)
+.|++++|.+++..+..+.. ......++.++++++.+++ .+|..+..+++|+.|+
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~ 283 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE 283 (353)
T ss_dssp EEEEEESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred cEEECCCCcccccccccccc---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEE
Confidence 66666666665433222211 0112333444444444433 1344555555566666
Q ss_pred CcCCcCCccchhHhhcCCCCCeEeccCCCC
Q 041558 333 LCKNKLVQELPKILEKLVQFSELDLSYNFL 362 (495)
Q Consensus 333 l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l 362 (495)
+++|+++...+..+..+++|+.|++++|++
T Consensus 284 Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCCCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 666655432222345556666666666666
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.5e-30 Score=246.31 Aligned_cols=278 Identities=21% Similarity=0.169 Sum_probs=156.1
Q ss_pred eeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCccccc--CChhhhcCCCCCEEecCC
Q 041558 27 GLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISY--IPSSFGNLTNLSTSRLSK 104 (495)
Q Consensus 27 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~ 104 (495)
.++.+++.++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 3444444444 2333221 3455555555554433333344555555555555544421 234444455555555555
Q ss_pred CcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCC-ccCcc-cccccccccccccccccCccCCCCC
Q 041558 105 NKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIP-PSLEN-PMLARLGLDFNHFKRTIPKSLRSCT 182 (495)
Q Consensus 105 n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~ 182 (495)
|.+. .+|. .+..+++|++|++++|.+++..+ ..+.. ++|++|++++|.+.+..+..+..++
T Consensus 88 n~i~-~l~~----------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 88 NGVI-TMSS----------------NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150 (306)
T ss_dssp CSEE-EEEE----------------EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred Cccc-cChh----------------hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence 5442 1222 12233444444445554444333 22333 5555666666666555666666777
Q ss_pred CCCEEEccCceeee-ccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceecc
Q 041558 183 SLIRLCRNRNNLTR-DISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDL 261 (495)
Q Consensus 183 ~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 261 (495)
+|+.|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 77777777777765 46666777777777777777777666777777777777777777777655556677777777777
Q ss_pred CCCeeeeecCCCCcccc-ccceeecccccccccCC--cccCCCCCCCEEeCCCCcCCCCchhhhhc
Q 041558 262 SLNHIIGEIPKELGKLN-SLIKLILRRNQLVGCLP--TEIGSPIELEYLDFSVNRFNNLIPESLEN 324 (495)
Q Consensus 262 s~n~l~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 324 (495)
++|.+.+..+..+..++ +|+.|++++|.+++..+ ....++...+.+....+.+....|..+.+
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 77777766666676663 77777777777764322 11222334444555555555555555544
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=3.3e-30 Score=243.96 Aligned_cols=279 Identities=19% Similarity=0.149 Sum_probs=166.7
Q ss_pred EEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeeccccccccc--CCccccCCCCCCeeeccC
Q 041558 3 LLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFAS--IPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 3 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l~~ 80 (495)
.++.+++.++ .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.+... .|..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4555666665 4554443 4666677776666644444466666677777766665532 244555666677777776
Q ss_pred CcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-cc
Q 041558 81 NQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PM 159 (495)
Q Consensus 81 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~ 159 (495)
|.+++ +|..+..+++|++|++++|.+.+..+. ..+..+++|++|++++|.+.+..+..+.. ++
T Consensus 88 n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~---------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 151 (306)
T 2z66_A 88 NGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF---------------SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151 (306)
T ss_dssp CSEEE-EEEEEETCTTCCEEECTTSEEESSTTT---------------TTTTTCTTCCEEECTTSCCEECSTTTTTTCTT
T ss_pred Ccccc-ChhhcCCCCCCCEEECCCCcccccccc---------------hhhhhccCCCEEECCCCcCCccchhhcccCcC
Confidence 66654 455566666677777766666432220 12344556666666666666666655555 66
Q ss_pred ccccccccccccc-ccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecc
Q 041558 160 LARLGLDFNHFKR-TIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVL 238 (495)
Q Consensus 160 L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 238 (495)
|++|++++|.+++ ..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 6677776666654 456666666677777777776666666666666667777777766665555556666667777777
Q ss_pred cccccccCCccccCCC-CCceeccCCCeeeeecCC--CCccccccceeecccccccccCCcccCC
Q 041558 239 MNTITKGIPREIRNSS-QRQALDLSLNHIIGEIPK--ELGKLNSLIKLILRRNQLVGCLPTEIGS 300 (495)
Q Consensus 239 ~n~l~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 300 (495)
+|.+.+..|..+..++ +|++|++++|.+.+.-+. ....+...+.+.+..+.+....|..+.+
T Consensus 232 ~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp TSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred CCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 7766666666666653 666777776666543211 0122333444455555555555555443
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=3.8e-30 Score=245.22 Aligned_cols=88 Identities=18% Similarity=0.270 Sum_probs=50.8
Q ss_pred ccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEec
Q 041558 23 QFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRL 102 (495)
Q Consensus 23 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 102 (495)
++++.|++++|.++ .+|..+..+++|++|+|++|.+. .+|..++++++|++|++++|.++ .+|..+.++++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 45566666666665 45555555666666666666655 55555566666666666666555 34555555666666666
Q ss_pred CCCcccccCCc
Q 041558 103 SKNKLFVSIPN 113 (495)
Q Consensus 103 ~~n~~~~~~~~ 113 (495)
++|++.+.+|.
T Consensus 158 ~~n~~~~~~p~ 168 (328)
T 4fcg_A 158 RACPELTELPE 168 (328)
T ss_dssp EEETTCCCCCS
T ss_pred CCCCCccccCh
Confidence 55554444443
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=249.87 Aligned_cols=279 Identities=21% Similarity=0.178 Sum_probs=193.1
Q ss_pred cccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCC
Q 041558 43 FGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLN 122 (495)
Q Consensus 43 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 122 (495)
-..|+.....+.+++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..
T Consensus 27 ~~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------- 95 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-------- 95 (353)
T ss_dssp CCEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT--------
T ss_pred CCCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh--------
Confidence 345677777899999866 4666554 58999999999999877778999999999999999886433332
Q ss_pred EEeeecccccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccc
Q 041558 123 ILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEAL 202 (495)
Q Consensus 123 ~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 202 (495)
+.++++|++|++++|.+++..+..|
T Consensus 96 -------------------------------------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~ 120 (353)
T 2z80_A 96 -------------------------------------------------------FSSLGSLEHLDLSYNYLSNLSSSWF 120 (353)
T ss_dssp -------------------------------------------------------TTTCTTCCEEECCSSCCSSCCHHHH
T ss_pred -------------------------------------------------------cCCCCCCCEEECCCCcCCcCCHhHh
Confidence 2333334444444444443333334
Q ss_pred cCCCCccEEEccCCcCcccCC-CCCCCCCCCCEEecccc-cccccCCccccCCCCCceeccCCCeeeeecCCCCcccccc
Q 041558 203 GIYPYLTFIDLSRNNFHGEIP-SNREKCPKLGTLGVLMN-TITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSL 280 (495)
Q Consensus 203 ~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L 280 (495)
+.+++|++|++++|.+++..+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 555555555555555553222 25556666666666666 3455445566677777777777777776667777777888
Q ss_pred ceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhh---cCCCCCEEeCcCCcCCc----cchhHhhcCCCCC
Q 041558 281 IKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLE---NLLKLHYLGLCKNKLVQ----ELPKILEKLVQFS 353 (495)
Q Consensus 281 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~ 353 (495)
+.|++++|.++...+..+..+++|++|++++|.+++..+..+. ..+.++.++++++.+++ .+|..+..+++|+
T Consensus 201 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~ 280 (353)
T 2z80_A 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280 (353)
T ss_dssp EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred CeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCC
Confidence 8888888877633333344577888888888888776544333 45678899999999876 4788899999999
Q ss_pred eEeccCCCCCCCCCcc--cccCCChhhccCCcCCCC
Q 041558 354 ELDLSYNFLGPIPNSI--AFRGASVEALKGNKRLCV 387 (495)
Q Consensus 354 ~l~ls~n~l~~~p~~~--~~~~~~~~~~~~n~~~c~ 387 (495)
.|++++|.+..+|... .+.......+.+|+..|.
T Consensus 281 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 281 ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 9999999998888753 345666777888988883
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.5e-29 Score=249.97 Aligned_cols=254 Identities=18% Similarity=0.115 Sum_probs=170.4
Q ss_pred CCeeeccCCcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCC
Q 041558 73 LGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIP 152 (495)
Q Consensus 73 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~ 152 (495)
...++.+++.++. +|..+. ++++.|+|++|++++..|..| ..+++|+.|++++|.
T Consensus 56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~----------------~~l~~L~~L~Ls~n~------ 110 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTF----------------RHLHHLEVLQLGRNS------ 110 (452)
T ss_dssp SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTT----------------TTCTTCCEEECCSSC------
T ss_pred CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHc----------------CCCCCCCEEECCCCc------
Confidence 4566676666654 444332 567777777776655444433 233444444555554
Q ss_pred ccCcccccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCC
Q 041558 153 PSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKL 232 (495)
Q Consensus 153 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 232 (495)
+++..+..|.++++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|
T Consensus 111 -----------------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 111 -----------------IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173 (452)
T ss_dssp -----------------CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred -----------------cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence 444555566666677777777776666666666667777777777777765555566677777
Q ss_pred CEEecccc-cccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCC
Q 041558 233 GTLGVLMN-TITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSV 311 (495)
Q Consensus 233 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 311 (495)
+.|++++| .+....+..|..+++|++|++++|.+++ +| .+..+++|+.|+|++|.+++..|..|..+++|+.|++++
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence 77777763 3333333456677777777777777763 33 466777788888888888777777777888888888888
Q ss_pred CcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCCccc
Q 041558 312 NRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNSIA 370 (495)
Q Consensus 312 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~~~~ 370 (495)
|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.+...+
T Consensus 252 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~ 310 (452)
T 3zyi_A 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILW 310 (452)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHH
T ss_pred CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchH
Confidence 88877777777788888888888888877767777777888888888888855555444
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.1e-29 Score=235.83 Aligned_cols=252 Identities=21% Similarity=0.164 Sum_probs=146.6
Q ss_pred EEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCc-
Q 041558 4 LIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQ- 82 (495)
Q Consensus 4 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~- 82 (495)
++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 16 ~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 16 TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 444444444 334332 2345555555555554444445555555555555555554445555555555555555554
Q ss_pred ccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-cccc
Q 041558 83 FISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLA 161 (495)
Q Consensus 83 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~ 161 (495)
+....|..|..+++|++|++++|.+ ++..+..+.. ++|+
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l----------------------------------------~~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGL----------------------------------------QELGPGLFRGLAALQ 132 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCC----------------------------------------CCCCTTTTTTCTTCC
T ss_pred ccccCHHHhcCCcCCCEEECCCCcC----------------------------------------CEECHhHhhCCcCCC
Confidence 4443344455555555555555544 4333333333 4445
Q ss_pred cccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEeccccc
Q 041558 162 RLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNT 241 (495)
Q Consensus 162 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 241 (495)
+|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 55555555555555556777777777777777777766677777778888888877777777777777778888888887
Q ss_pred ccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccC
Q 041558 242 ITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIG 299 (495)
Q Consensus 242 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 299 (495)
+++..+..+..+++|+.|++++|.+....+.. .....++.+....+.+....|..+.
T Consensus 213 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp CSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred CCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence 77755556777777888888887776332211 1122344455556666655665543
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.7e-29 Score=248.94 Aligned_cols=255 Identities=18% Similarity=0.151 Sum_probs=155.3
Q ss_pred CCCeeeccCCcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCC
Q 041558 72 SLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSI 151 (495)
Q Consensus 72 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~ 151 (495)
..+.++.+++.++. +|..+. ++++.|+|++|++.+..+..| ..+++|++|++++|.++
T Consensus 44 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~----------------~~l~~L~~L~Ls~n~i~--- 101 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSF----------------KHLRHLEILQLSRNHIR--- 101 (440)
T ss_dssp TSCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTT----------------SSCSSCCEEECCSSCCC---
T ss_pred CCCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHh----------------hCCCCCCEEECCCCcCC---
Confidence 35567777766654 454443 567777777777654444333 33445555555555554
Q ss_pred CccCcccccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCC
Q 041558 152 PPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPK 231 (495)
Q Consensus 152 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 231 (495)
+..+..|.++++|+.|++++|++++..+..|..+++|++|++++|.+++..+..+..+++
T Consensus 102 --------------------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 102 --------------------TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161 (440)
T ss_dssp --------------------EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTT
T ss_pred --------------------ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcc
Confidence 344445555666666666666666555555666666666666666666555555666666
Q ss_pred CCEEeccccc-ccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCC
Q 041558 232 LGTLGVLMNT-ITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFS 310 (495)
Q Consensus 232 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 310 (495)
|+.|++++|. +....+..|..+++|++|++++|.++ .+| .+..+++|+.|+|++|.+++..|..|..+++|+.|+|+
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECC
Confidence 6666666633 33323335566666666666666665 333 35666667777777777666666666667777777777
Q ss_pred CCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCCccc
Q 041558 311 VNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNSIA 370 (495)
Q Consensus 311 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~~~~ 370 (495)
+|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.+...|
T Consensus 240 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~ 299 (440)
T 3zyj_A 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILW 299 (440)
T ss_dssp TCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred CCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCchH
Confidence 777766666666677777777777777766666666667777777777777754444433
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.4e-28 Score=245.71 Aligned_cols=247 Identities=22% Similarity=0.171 Sum_probs=155.2
Q ss_pred cCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEecC
Q 041558 24 FLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLS 103 (495)
Q Consensus 24 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 103 (495)
....++.++..++ .+|..+. +++++|+|++|.+.+..|..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4578888888888 5666554 689999999999999888999999999999999999998888899999999999999
Q ss_pred CCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCccCCCCCC
Q 041558 104 KNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTS 183 (495)
Q Consensus 104 ~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 183 (495)
+|.+++..+..+ ..+++|++|++++|.++ ...+..|.++++
T Consensus 132 ~n~l~~~~~~~~----------------~~l~~L~~L~L~~N~l~-----------------------~~~~~~~~~l~~ 172 (452)
T 3zyi_A 132 DNWLTVIPSGAF----------------EYLSKLRELWLRNNPIE-----------------------SIPSYAFNRVPS 172 (452)
T ss_dssp SSCCSBCCTTTS----------------SSCTTCCEEECCSCCCC-----------------------EECTTTTTTCTT
T ss_pred CCcCCccChhhh----------------cccCCCCEEECCCCCcc-----------------------eeCHhHHhcCCc
Confidence 998864333322 33344444455544433 333344555666
Q ss_pred CCEEEccC-ceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccC
Q 041558 184 LIRLCRNR-NNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLS 262 (495)
Q Consensus 184 L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 262 (495)
|+.|++++ +.+....+..|..+++|++|++++|.+++ +| .+..+++|+.|++++|.+.+..|..|..+++|+.|+++
T Consensus 173 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250 (452)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECT
T ss_pred ccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeC
Confidence 66666665 33334444456666666666666666653 23 24555555555555555555555555555555555555
Q ss_pred CCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcC
Q 041558 263 LNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRF 314 (495)
Q Consensus 263 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 314 (495)
+|.+.+..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+
T Consensus 251 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 251 NSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 5555544444455555555555555555543444444444444454444443
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.3e-29 Score=234.52 Aligned_cols=228 Identities=22% Similarity=0.171 Sum_probs=186.9
Q ss_pred CEEEccccccccCCCccCcccccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCc
Q 041558 138 KELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNN 217 (495)
Q Consensus 138 ~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 217 (495)
+.++.+++.++ .+|..+ .+++++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~-~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCS-SCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcc-cCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 34555555554 233322 2577888888888887777788888899999999998888888888888999999999887
Q ss_pred -CcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCc
Q 041558 218 -FHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPT 296 (495)
Q Consensus 218 -l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 296 (495)
+....|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 7766678888889999999999998887788888889999999999988866666788889999999999998866666
Q ss_pred ccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCC
Q 041558 297 EIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPN 367 (495)
Q Consensus 297 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~ 367 (495)
.+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.+.
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 78888999999999999988888888889999999999999988777888889999999999999944443
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=244.02 Aligned_cols=247 Identities=23% Similarity=0.216 Sum_probs=154.3
Q ss_pred cCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEecC
Q 041558 24 FLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLS 103 (495)
Q Consensus 24 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 103 (495)
..+.++.+++.++ .+|..+. +++++|+|++|++.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4678899998888 6776554 689999999999998888999999999999999999998888899999999999999
Q ss_pred CCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCccCCCCCC
Q 041558 104 KNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTS 183 (495)
Q Consensus 104 ~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 183 (495)
+|+++...+..| ..+++|++|++++|.++ ...+..|..+++
T Consensus 121 ~n~l~~~~~~~~----------------~~l~~L~~L~L~~N~i~-----------------------~~~~~~~~~l~~ 161 (440)
T 3zyj_A 121 DNRLTTIPNGAF----------------VYLSKLKELWLRNNPIE-----------------------SIPSYAFNRIPS 161 (440)
T ss_dssp SSCCSSCCTTTS----------------CSCSSCCEEECCSCCCC-----------------------EECTTTTTTCTT
T ss_pred CCcCCeeCHhHh----------------hccccCceeeCCCCccc-----------------------ccCHHHhhhCcc
Confidence 998853322222 23334444444444333 233334455555
Q ss_pred CCEEEccC-ceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccC
Q 041558 184 LIRLCRNR-NNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLS 262 (495)
Q Consensus 184 L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 262 (495)
|+.|++++ +.+....+..|..+++|++|++++|.++ .+| .+..+++|++|+++
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-------------------------~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-------------------------NLTPLIKLDELDLS 215 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-------------------------CCTTCSSCCEEECT
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-------------------------ccCCCcccCEEECC
Confidence 55555555 2333333344555555555555555554 222 23344445555555
Q ss_pred CCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcC
Q 041558 263 LNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKL 338 (495)
Q Consensus 263 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 338 (495)
+|.+++..|..|..+++|+.|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++
T Consensus 216 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 5555544455555555555555555555555555555555555555555555555555555556666666666655
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3.3e-29 Score=238.79 Aligned_cols=205 Identities=17% Similarity=0.207 Sum_probs=152.3
Q ss_pred cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCC---------
Q 041558 158 PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREK--------- 228 (495)
Q Consensus 158 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--------- 228 (495)
++|++|++++|.++ .+|..+..+++|+.|++++|.+. .+|..++.+++|++|++++|.+.+.+|..+..
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence 44444444555554 45555566666666666666665 44556666666666666666666666655543
Q ss_pred CCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEe
Q 041558 229 CPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLD 308 (495)
Q Consensus 229 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 308 (495)
+++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..+..+++|++|+
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 788888888888887 57777888888888888888887 4666788888888888888888888888888888888888
Q ss_pred CCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCC
Q 041558 309 FSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIP 366 (495)
Q Consensus 309 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p 366 (495)
+++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.+++..+.+..++
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 8888888888888888888888888888888888888888888888888877665444
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.9e-27 Score=243.46 Aligned_cols=268 Identities=24% Similarity=0.277 Sum_probs=178.0
Q ss_pred cCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEecC
Q 041558 24 FLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLS 103 (495)
Q Consensus 24 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 103 (495)
+++.|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|++|+|++|++++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 4666666666666 4454443 566666666666553 333 35666666666666654 333 45666666666
Q ss_pred CCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCccCCCCCC
Q 041558 104 KNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTS 183 (495)
Q Consensus 104 ~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~ 183 (495)
+|.+++ +|. .+++|+.|++++|.+++ +|..+ ++|+.|++++|.+++ +|. .+++
T Consensus 110 ~N~l~~-l~~-------------------~l~~L~~L~L~~N~l~~-lp~~l--~~L~~L~Ls~N~l~~-l~~---~~~~ 162 (622)
T 3g06_A 110 SNPLTH-LPA-------------------LPSGLCKLWIFGNQLTS-LPVLP--PGLQELSVSDNQLAS-LPA---LPSE 162 (622)
T ss_dssp SCCCCC-CCC-------------------CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSC-CCC---CCTT
T ss_pred CCcCCC-CCC-------------------CCCCcCEEECCCCCCCc-CCCCC--CCCCEEECcCCcCCC-cCC---ccCC
Confidence 666542 222 13455666666666554 33322 566777777776664 232 3466
Q ss_pred CCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCC
Q 041558 184 LIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSL 263 (495)
Q Consensus 184 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 263 (495)
|+.|++++|.+++.. ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++. +|.. +++|+.|++++
T Consensus 163 L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~ 230 (622)
T 3g06_A 163 LCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSG 230 (622)
T ss_dssp CCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCC---CTTCCEEECCS
T ss_pred CCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCCC---CCCCCEEEccC
Confidence 778888888777633 346778888888888874 4443 4678888888888775 4432 46788888888
Q ss_pred CeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccch
Q 041558 264 NHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELP 343 (495)
Q Consensus 264 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 343 (495)
|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|+|++|.++. +|..+..+++|+.|++++|++++.+|
T Consensus 231 N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 231 NRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp SCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred CccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCH
Confidence 88874 55 34577888888888888 5555 56788889999988884 57778888889999999999888888
Q ss_pred hHhhcCC
Q 041558 344 KILEKLV 350 (495)
Q Consensus 344 ~~~~~l~ 350 (495)
..+..++
T Consensus 302 ~~l~~L~ 308 (622)
T 3g06_A 302 QALREIT 308 (622)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 7776654
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=1.9e-30 Score=246.57 Aligned_cols=257 Identities=16% Similarity=0.109 Sum_probs=146.5
Q ss_pred CeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEecCCC
Q 041558 26 WGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKN 105 (495)
Q Consensus 26 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 105 (495)
+..+++.+.+.......+..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 344555555554444444556666666666666666555666666666666666666665433 666666666666666
Q ss_pred cccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCccCCCCCCCC
Q 041558 106 KLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLI 185 (495)
Q Consensus 106 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 185 (495)
.+++. + ..++|++|++++|.+++..+. .+++|+
T Consensus 91 ~l~~l-~--------------------~~~~L~~L~l~~n~l~~~~~~--------------------------~~~~L~ 123 (317)
T 3o53_A 91 YVQEL-L--------------------VGPSIETLHAANNNISRVSCS--------------------------RGQGKK 123 (317)
T ss_dssp EEEEE-E--------------------ECTTCCEEECCSSCCSEEEEC--------------------------CCSSCE
T ss_pred ccccc-c--------------------CCCCcCEEECCCCccCCcCcc--------------------------ccCCCC
Confidence 65421 1 124455555555544432211 123455
Q ss_pred EEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCC-CCCCCCCEEecccccccccCCccccCCCCCceeccCCC
Q 041558 186 RLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNR-EKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLN 264 (495)
Q Consensus 186 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 264 (495)
.|++++|.+++..+..++.+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|
T Consensus 124 ~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSN 201 (317)
T ss_dssp EEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSS
T ss_pred EEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCC
Confidence 55555555555444445555555555555555554444333 2455555555555555543 1 1223566666666666
Q ss_pred eeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCC-CCchhhhhcCCCCCEEeCcC
Q 041558 265 HIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFN-NLIPESLENLLKLHYLGLCK 335 (495)
Q Consensus 265 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~ 335 (495)
.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.++..+..+++|+.+++++
T Consensus 202 ~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 202 KLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 6663 3344666667777777777776 45666666777777777777776 55666677777777777663
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=3.3e-30 Score=244.92 Aligned_cols=254 Identities=18% Similarity=0.134 Sum_probs=163.3
Q ss_pred EEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcc
Q 041558 4 LIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQF 83 (495)
Q Consensus 4 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 83 (495)
.+++.+.+....+..+..+++|++|++++|.+++..|..|+++++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 3445555554444556677899999999999998888899999999999999999887654 89999999999999998
Q ss_pred cccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcccccccc
Q 041558 84 ISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARL 163 (495)
Q Consensus 84 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 163 (495)
++.. ..++|++|++++|.+++..+. .+++|++|++++|.+++..+..+
T Consensus 93 ~~l~-----~~~~L~~L~l~~n~l~~~~~~-------------------~~~~L~~L~l~~N~l~~~~~~~~-------- 140 (317)
T 3o53_A 93 QELL-----VGPSIETLHAANNNISRVSCS-------------------RGQGKKNIYLANNKITMLRDLDE-------- 140 (317)
T ss_dssp EEEE-----ECTTCCEEECCSSCCSEEEEC-------------------CCSSCEEEECCSSCCCSGGGBCT--------
T ss_pred cccc-----CCCCcCEEECCCCccCCcCcc-------------------ccCCCCEEECCCCCCCCccchhh--------
Confidence 8633 348999999999998654322 24567777777777765444444
Q ss_pred cccccccccccCccCCCCCCCCEEEccCceeeeccCccc-cCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccc
Q 041558 164 GLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEAL-GIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTI 242 (495)
Q Consensus 164 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 242 (495)
..+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++. +. ...+++|+.|++++|.+
T Consensus 141 ---------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 141 ---------------GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp ---------------GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCC
T ss_pred ---------------hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcC
Confidence 344444444444444444443333 2345555555555555433 21 12245555555555555
Q ss_pred cccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeeccccccc-ccCCcccCCCCCCCEEeCC
Q 041558 243 TKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLV-GCLPTEIGSPIELEYLDFS 310 (495)
Q Consensus 243 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls 310 (495)
++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++ +.+|..+..+++|+.++++
T Consensus 204 ~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 204 AF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred Cc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 54 2333555555666666666555 34555555556666666666655 4455555555555555555
No 65
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3.7e-31 Score=274.00 Aligned_cols=361 Identities=13% Similarity=0.071 Sum_probs=229.5
Q ss_pred CcEEEeeCCcccccCCccCcC-Ccc-CCeeecccCc-ccc-cCCcccccCcccceeecccccccccC----CccccCCCC
Q 041558 1 MALLIIHNNSLSGFIPLNIGN-SQF-LWGLDLSNNQ-FSS-SIPLSFGNLSNLIFLYLYENSYFASI----PSNVGKLKS 72 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~~-l~~-L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~----~~~~~~l~~ 72 (495)
|++|+|++|.+++..+..+.. ++. |++|++++|. ++. .++....++++|++|+|++|.+.+.. +..+..+++
T Consensus 114 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred CCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 345555555544443333333 222 5555555544 110 01111235566666666666654432 222345666
Q ss_pred CCeeeccCCccc----ccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEee-----------ecccccCCCCC
Q 041558 73 LGDLQLNGNQFI----SYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEV-----------LPLSVSNLTNP 137 (495)
Q Consensus 73 L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l-----------~~~~l~~~~~L 137 (495)
|++|++++|.++ +.++..+.++++|+.|++++|.+.+ +|..+..+++|+.|.+ .+..+..+++|
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 666666666665 2334445566777777777766643 5566666677777666 12345566777
Q ss_pred CEEEccccccccCCCccCcc-cccccccccccccccccC-ccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccC
Q 041558 138 KELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIP-KSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSR 215 (495)
Q Consensus 138 ~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 215 (495)
+.++++++. .+.+|..+.. ++|++|++++|.+++... ..+..+++|+.|+++++-..+.++..+..+++|++|++++
T Consensus 273 ~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~ 351 (592)
T 3ogk_B 273 CRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351 (592)
T ss_dssp CEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred cccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeec
Confidence 777776642 2344444444 788999998888754433 3467888999998884333333444446678899999983
Q ss_pred -----------CcCccc-CCCCCCCCCCCCEEecccccccccCCccccC-CCCCceeccC----CCeeeee-----cCCC
Q 041558 216 -----------NNFHGE-IPSNREKCPKLGTLGVLMNTITKGIPREIRN-SSQRQALDLS----LNHIIGE-----IPKE 273 (495)
Q Consensus 216 -----------n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~ls----~n~l~~~-----~~~~ 273 (495)
+.+++. ++.....+++|+.|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..
T Consensus 352 g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~ 431 (592)
T 3ogk_B 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431 (592)
T ss_dssp CCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred CccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence 455432 2222345889999999888888766666654 8899999996 5666642 2223
Q ss_pred Cccccccceeeccccc--ccccCCccc-CCCCCCCEEeCCCCcCCCC-chhhhhcCCCCCEEeCcCCcCCcc-chhHhhc
Q 041558 274 LGKLNSLIKLILRRNQ--LVGCLPTEI-GSPIELEYLDFSVNRFNNL-IPESLENLLKLHYLGLCKNKLVQE-LPKILEK 348 (495)
Q Consensus 274 ~~~~~~L~~L~L~~n~--l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~ 348 (495)
+..+++|+.|++++|. +++..+..+ ..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++. ++.....
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 5668899999997543 554444333 3478899999999998863 455567889999999999998654 4555678
Q ss_pred CCCCCeEeccCCCCC
Q 041558 349 LVQFSELDLSYNFLG 363 (495)
Q Consensus 349 l~~L~~l~ls~n~l~ 363 (495)
+++|+.|++++|+++
T Consensus 512 l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 512 LPSLRYLWVQGYRAS 526 (592)
T ss_dssp CSSCCEEEEESCBCC
T ss_pred cCccCeeECcCCcCC
Confidence 899999999999983
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.5e-29 Score=239.75 Aligned_cols=154 Identities=21% Similarity=0.213 Sum_probs=103.5
Q ss_pred cccccccccccccccccCccCCCCCCCCEEEccCceeeec--cCccc--cCCCCccEEEccCCcCccc--C-CCCCCCCC
Q 041558 158 PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRD--ISEAL--GIYPYLTFIDLSRNNFHGE--I-PSNREKCP 230 (495)
Q Consensus 158 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~--~~~~~L~~L~l~~n~l~~~--~-~~~~~~~~ 230 (495)
++|++|++++|.+++..+..++.+++|+.|++++|++.+. .+..+ +.+++|++|++++|.+++. + ...+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 4556666666666655556666777777777777766543 22223 6667777777777777621 1 12334567
Q ss_pred CCCEEecccccccccCC-ccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeC
Q 041558 231 KLGTLGVLMNTITKGIP-REIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDF 309 (495)
Q Consensus 231 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 309 (495)
+|+.|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 77777777777777554 34556677888888888877 6666655 7788888888888854 55 777888888888
Q ss_pred CCCcCCC
Q 041558 310 SVNRFNN 316 (495)
Q Consensus 310 s~n~l~~ 316 (495)
++|.+++
T Consensus 304 ~~N~l~~ 310 (312)
T 1wwl_A 304 KGNPFLD 310 (312)
T ss_dssp TTCTTTC
T ss_pred cCCCCCC
Confidence 8888775
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.2e-29 Score=240.52 Aligned_cols=251 Identities=21% Similarity=0.197 Sum_probs=150.0
Q ss_pred cccCcccceeecccccccccCCccccCCCCCCeeeccCCccc-ccCChhhh-------cCCCCCEEecCCCcccccCCcc
Q 041558 43 FGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFI-SYIPSSFG-------NLTNLSTSRLSKNKLFVSIPNE 114 (495)
Q Consensus 43 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~ 114 (495)
++..++|++|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34455566666666665 455444332 555666666552 23444333 4555555555555555444443
Q ss_pred ccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCccCCCC-----CCCCEEEc
Q 041558 115 IGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSC-----TSLIRLCR 189 (495)
Q Consensus 115 ~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~l 189 (495)
+. +..+++|++|++++|+++ +. |..+..+ ++|++|++
T Consensus 115 ~~--------------~~~l~~L~~L~Ls~N~l~-----------------------~~-~~~~~~l~~~~~~~L~~L~L 156 (312)
T 1wwl_A 115 LL--------------EATGPDLNILNLRNVSWA-----------------------TR-DAWLAELQQWLKPGLKVLSI 156 (312)
T ss_dssp SS--------------SCCSCCCSEEEEESCBCS-----------------------SS-SSHHHHHHTTCCTTCCEEEE
T ss_pred HH--------------HhcCCCccEEEccCCCCc-----------------------ch-hHHHHHHHHhhcCCCcEEEe
Confidence 20 122334444444444443 33 3333333 77888888
Q ss_pred cCceeeeccCccccCCCCccEEEccCCcCccc--CCCCC--CCCCCCCEEeccccccccc--CC-ccccCCCCCceeccC
Q 041558 190 NRNNLTRDISEALGIYPYLTFIDLSRNNFHGE--IPSNR--EKCPKLGTLGVLMNTITKG--IP-REIRNSSQRQALDLS 262 (495)
Q Consensus 190 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~--~~~~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~L~ls 262 (495)
++|++.+..+..|+.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++. ++ ..+..+++|++|+++
T Consensus 157 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp ESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred eCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 88888877777888888888888888876654 22222 6677778888887777631 22 233466777777777
Q ss_pred CCeeeeecC-CCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCc
Q 041558 263 LNHIIGEIP-KELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQ 340 (495)
Q Consensus 263 ~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 340 (495)
+|.+++..| ..+..+++|+.|++++|.++ .+|..+. ++|++|++++|.+++. |. +..+++|+.|++++|++++
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 777776553 34555677777777777776 5565554 6677777777777665 33 6666667777777776654
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.2e-28 Score=245.51 Aligned_cols=237 Identities=17% Similarity=0.082 Sum_probs=126.2
Q ss_pred CcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEe
Q 041558 46 LSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILE 125 (495)
Q Consensus 46 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 125 (495)
+++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++. |
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~------------- 96 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L------------- 96 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E-------------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C-------------
Confidence 3466666666666666555666666666666666666665443 66666666666666665421 1
Q ss_pred eecccccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCC
Q 041558 126 VLPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIY 205 (495)
Q Consensus 126 l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 205 (495)
..++|+.|++++|.+++..+..+ ++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+.
T Consensus 97 -------~~~~L~~L~L~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-- 165 (487)
T 3oja_A 97 -------VGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA-- 165 (487)
T ss_dssp -------ECTTCCEEECCSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG--
T ss_pred -------CCCCcCEEECcCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh--
Confidence 11344555555554443222111 3344444444444444444444444444444444444444444333
Q ss_pred CCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeec
Q 041558 206 PYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLIL 285 (495)
Q Consensus 206 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L 285 (495)
..+++|+.|++++|.+++..+ ...+++|+.|++++|.+++ +|..+..+++|+.|++
T Consensus 166 ---------------------~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 166 ---------------------ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221 (487)
T ss_dssp ---------------------GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred ---------------------hhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEe
Confidence 134445555555555444311 2235556666666666653 2333556666666666
Q ss_pred ccccccccCCcccCCCCCCCEEeCCCCcCC-CCchhhhhcCCCCCEEeCc
Q 041558 286 RRNQLVGCLPTEIGSPIELEYLDFSVNRFN-NLIPESLENLLKLHYLGLC 334 (495)
Q Consensus 286 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~ 334 (495)
++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 222 s~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 222 RNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 6666663 4555666666677777777666 4455666666666666654
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.3e-25 Score=230.02 Aligned_cols=261 Identities=25% Similarity=0.254 Sum_probs=216.1
Q ss_pred cccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEee
Q 041558 47 SNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEV 126 (495)
Q Consensus 47 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 126 (495)
.++++|++++|.++ .+|..+. ++|++|++++|.+++ +|. .+++|++|++++|+++ .+|.
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~------------- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV------------- 98 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC-------------
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC-------------
Confidence 46999999999987 6777665 899999999999986 555 5799999999999985 3443
Q ss_pred ecccccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCC
Q 041558 127 LPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYP 206 (495)
Q Consensus 127 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 206 (495)
.+++|++|++++|.+++. |. ..++|+.|++++|.+++ +|.. +++|+.|++++|.+++.. . .++
T Consensus 99 ------~l~~L~~L~Ls~N~l~~l-~~--~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~-~---~~~ 161 (622)
T 3g06_A 99 ------LPPGLLELSIFSNPLTHL-PA--LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLP-A---LPS 161 (622)
T ss_dssp ------CCTTCCEEEECSCCCCCC-CC--CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC-C---CCT
T ss_pred ------CCCCCCEEECcCCcCCCC-CC--CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcC-C---ccC
Confidence 357888999999998864 43 33889999999999985 4543 489999999999998643 2 457
Q ss_pred CccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecc
Q 041558 207 YLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILR 286 (495)
Q Consensus 207 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~ 286 (495)
+|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|.. +++|+.|+++
T Consensus 162 ~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls 229 (622)
T 3g06_A 162 ELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVS 229 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred CCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEcc
Confidence 89999999999995 66 457899999999999987 4543 478999999999998 55543 4789999999
Q ss_pred cccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCC-CCC
Q 041558 287 RNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL-GPI 365 (495)
Q Consensus 287 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l-~~~ 365 (495)
+|.+++ +| ..+++|+.|++++|.++.+ |. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++ +..
T Consensus 230 ~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 230 GNRLTS-LP---VLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp SSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred CCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence 999995 66 4568999999999999975 43 6789999999999997 6788899999999999999999 444
Q ss_pred C
Q 041558 366 P 366 (495)
Q Consensus 366 p 366 (495)
|
T Consensus 301 ~ 301 (622)
T 3g06_A 301 L 301 (622)
T ss_dssp H
T ss_pred H
Confidence 3
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=1.6e-29 Score=261.77 Aligned_cols=382 Identities=14% Similarity=0.099 Sum_probs=272.2
Q ss_pred CcEEEeeCCcc---cccCCccCc------------CCccCCeeecccCcccccCCccccc-Ccc-cceeecccccc-cc-
Q 041558 1 MALLIIHNNSL---SGFIPLNIG------------NSQFLWGLDLSNNQFSSSIPLSFGN-LSN-LIFLYLYENSY-FA- 61 (495)
Q Consensus 1 L~~L~l~~n~l---~~~~~~~~~------------~l~~L~~L~l~~n~l~~~~~~~~~~-l~~-L~~L~L~~n~~-~~- 61 (495)
|++|+++++.. .+.+|..++ .+++|++|+|++|.+++..+..+.. +++ |++|+|++|.- ..
T Consensus 75 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~ 154 (592)
T 3ogk_B 75 LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTD 154 (592)
T ss_dssp CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHH
T ss_pred CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHH
Confidence 57888877542 234454444 6889999999999888766666665 444 99999998862 11
Q ss_pred cCCccccCCCCCCeeeccCCccccc----CChhhhcCCCCCEEecCCCccc----ccCCccccCCCCCCEEee-------
Q 041558 62 SIPSNVGKLKSLGDLQLNGNQFISY----IPSSFGNLTNLSTSRLSKNKLF----VSIPNEIGKMRSLNILEV------- 126 (495)
Q Consensus 62 ~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~l------- 126 (495)
.++....++++|++|+|++|.+++. ++..+..+++|++|++++|.++ +.++..+.++++|+.|++
T Consensus 155 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 155 GLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred HHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 1222334789999999999988765 4445678899999999999886 345556678899999988
Q ss_pred ecccccCCCCCCEEEccccccc---cCCCccCcc-cccccccccccccccccCccCCCCCCCCEEEccCceeeeccC-cc
Q 041558 127 LPLSVSNLTNPKELALLYNCLS---GSIPPSLEN-PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDIS-EA 201 (495)
Q Consensus 127 ~~~~l~~~~~L~~L~l~~n~l~---~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~ 201 (495)
++..+..+++|++|+++..... +..+..+.. ++|+.++++++. ...+|..+..+++|+.|++++|.+++... ..
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~ 313 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH
Confidence 5566778889999999864322 122233333 788888887753 34567778889999999999999765543 44
Q ss_pred ccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEeccc-----------cccccc-CCccccCCCCCceeccCCCeeeee
Q 041558 202 LGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLM-----------NTITKG-IPREIRNSSQRQALDLSLNHIIGE 269 (495)
Q Consensus 202 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~ 269 (495)
+..+++|+.|+++++...+.++..+..+++|+.|++++ |.+++. ++..+..+++|++|+++.|.+++.
T Consensus 314 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~ 393 (592)
T 3ogk_B 314 IQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNE 393 (592)
T ss_dssp HTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHH
T ss_pred HHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHH
Confidence 68899999999994433333444446688999999993 566543 223345689999999988888876
Q ss_pred cCCCCcc-ccccceeecc----ccccccc-----CCcccCCCCCCCEEeCCCCc--CCCCchhhhh-cCCCCCEEeCcCC
Q 041558 270 IPKELGK-LNSLIKLILR----RNQLVGC-----LPTEIGSPIELEYLDFSVNR--FNNLIPESLE-NLLKLHYLGLCKN 336 (495)
Q Consensus 270 ~~~~~~~-~~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~l~~n 336 (495)
.+..+.. +++|+.|+++ .|.+++. ++..+..+++|++|+++.|. +++..+..+. .+++|+.|++++|
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 6555554 8899999996 6677753 33346678999999998653 6665555554 4899999999999
Q ss_pred cCCc-cchhHhhcCCCCCeEeccCCCCCC--CCCc-ccccCCChhhccCCc
Q 041558 337 KLVQ-ELPKILEKLVQFSELDLSYNFLGP--IPNS-IAFRGASVEALKGNK 383 (495)
Q Consensus 337 ~l~~-~~~~~~~~l~~L~~l~ls~n~l~~--~p~~-~~~~~~~~~~~~~n~ 383 (495)
++++ .++..+..+++|+.|++++|+++. ++.. ...+......+.+|.
T Consensus 474 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 474 GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 9976 456667889999999999999721 2221 123444555555555
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=4.6e-26 Score=212.05 Aligned_cols=208 Identities=20% Similarity=0.167 Sum_probs=169.1
Q ss_pred cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEec
Q 041558 158 PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGV 237 (495)
Q Consensus 158 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 237 (495)
+++++|++++|.+++..+..+.++++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46778888888887776667888888888888888888888888888888888888888888777788888888888888
Q ss_pred ccccccccCCccccCCCCCceeccCCCeeeee-cCCCCccccccceeecccccccccCCcccCCCCCCC----EEeCCCC
Q 041558 238 LMNTITKGIPREIRNSSQRQALDLSLNHIIGE-IPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELE----YLDFSVN 312 (495)
Q Consensus 238 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~Ls~n 312 (495)
++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|+.|++++|++++..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 88888886666788888888888888888753 577888888888899998888876666776666666 8899999
Q ss_pred cCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCC
Q 041558 313 RFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIP 366 (495)
Q Consensus 313 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p 366 (495)
.+++..+..+.. .+|+.|++++|++++..+..+..+++|+.|++++|++.+.+
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 988776555543 48999999999998777777888999999999999994433
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=4e-25 Score=204.83 Aligned_cols=206 Identities=19% Similarity=0.141 Sum_probs=156.6
Q ss_pred ccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecc
Q 041558 159 MLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVL 238 (495)
Q Consensus 159 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 238 (495)
..+.++++++.++. +|..+. ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 34556666666653 444332 567777777777777776777777888888888887775555566777888888888
Q ss_pred cccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCc
Q 041558 239 MNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLI 318 (495)
Q Consensus 239 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 318 (495)
+|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88877766666777888888888888887666667788888888888888888666666788888888888888888877
Q ss_pred hhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCC
Q 041558 319 PESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPN 367 (495)
Q Consensus 319 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~ 367 (495)
+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 7778888888888888888877777778888888899999998855443
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=7.5e-29 Score=256.80 Aligned_cols=359 Identities=16% Similarity=0.100 Sum_probs=212.2
Q ss_pred CcEEEeeCCcccccCCccCc-CCccCCeeecccC-ccccc-CCcccccCcccceeecccccccccCCcccc----CCCCC
Q 041558 1 MALLIIHNNSLSGFIPLNIG-NSQFLWGLDLSNN-QFSSS-IPLSFGNLSNLIFLYLYENSYFASIPSNVG----KLKSL 73 (495)
Q Consensus 1 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~----~l~~L 73 (495)
|++|+|++|.+++..+..+. .+++|++|++++| .+++. ++..+.++++|++|++++|.+++..+..+. .+++|
T Consensus 107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L 186 (594)
T 2p1m_B 107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186 (594)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence 34555555555544444443 4555556665555 33321 222233555666666665555443333222 44456
Q ss_pred CeeeccCCc--ccc-cCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEee--------------ecccccCCCC
Q 041558 74 GDLQLNGNQ--FIS-YIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEV--------------LPLSVSNLTN 136 (495)
Q Consensus 74 ~~L~l~~n~--l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l--------------~~~~l~~~~~ 136 (495)
++|++++|. ++. .++..+..+++|++|++++|...+.++..+..+++|+.|.+ ++..+.++++
T Consensus 187 ~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~ 266 (594)
T 2p1m_B 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266 (594)
T ss_dssp CEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTT
T ss_pred cEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCC
Confidence 666666554 111 11122234466666666655222235555555666666652 2224556666
Q ss_pred CCEE-EccccccccCCCccCcc-ccccccccccccccccc-CccCCCCCCCCEEEccCceeeec-cCccccCCCCccEEE
Q 041558 137 PKEL-ALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTI-PKSLRSCTSLIRLCRNRNNLTRD-ISEALGIYPYLTFID 212 (495)
Q Consensus 137 L~~L-~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~ 212 (495)
|+.+ .+.... .+.++..+.. ++|++|++++|.+++.. ...+..+++|+.|++++| +.+. .+.....+++|++|+
T Consensus 267 L~~Ls~~~~~~-~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 267 LRCLSGFWDAV-PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR 344 (594)
T ss_dssp CCEEECCBTCC-GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred cccccCCcccc-hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence 6666 222211 1122222223 78999999998876432 233568899999999988 4432 233334578899998
Q ss_pred ccC---------CcCcccCCCCC-CCCCCCCEEecccccccccCCcccc-CCCCCceeccC--C----Ceeeee-----c
Q 041558 213 LSR---------NNFHGEIPSNR-EKCPKLGTLGVLMNTITKGIPREIR-NSSQRQALDLS--L----NHIIGE-----I 270 (495)
Q Consensus 213 l~~---------n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~ls--~----n~l~~~-----~ 270 (495)
+.+ +.+++.....+ ..+++|+.|.+..|.+++..+..+. .+++|+.|+++ + +.+++. +
T Consensus 345 L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 424 (594)
T 2p1m_B 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424 (594)
T ss_dssp EECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH
T ss_pred EecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHH
Confidence 843 34433211122 2478899998888888775555554 58899999998 3 344311 1
Q ss_pred CCCCccccccceeecccccccccCCcccCC-CCCCCEEeCCCCcCCCCchhhh-hcCCCCCEEeCcCCcCCccchh-Hhh
Q 041558 271 PKELGKLNSLIKLILRRNQLVGCLPTEIGS-PIELEYLDFSVNRFNNLIPESL-ENLLKLHYLGLCKNKLVQELPK-ILE 347 (495)
Q Consensus 271 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~-~~~ 347 (495)
+..+..+++|+.|++++ .+++..+..+.. +++|++|+|++|.+++.....+ ..+++|+.|++++|++++.... ...
T Consensus 425 ~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~ 503 (594)
T 2p1m_B 425 GAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANAS 503 (594)
T ss_dssp HHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGG
T ss_pred HHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHH
Confidence 11245678899999977 666544444444 7889999999999877655555 6789999999999998554443 445
Q ss_pred cCCCCCeEeccCCCC
Q 041558 348 KLVQFSELDLSYNFL 362 (495)
Q Consensus 348 ~l~~L~~l~ls~n~l 362 (495)
.+++|+.|++++|++
T Consensus 504 ~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 504 KLETMRSLWMSSCSV 518 (594)
T ss_dssp GGGGSSEEEEESSCC
T ss_pred hCCCCCEEeeeCCCC
Confidence 688999999999987
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3.6e-25 Score=205.99 Aligned_cols=207 Identities=22% Similarity=0.155 Sum_probs=165.6
Q ss_pred CCCEEEccccccccCCCccCcc-cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEcc
Q 041558 136 NPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLS 214 (495)
Q Consensus 136 ~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 214 (495)
+|++|++++|.+++..+..+.. ++|++|++++|.+++..+..+.++++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 3444555555544444434443 556666666666666666678888999999999999988888888999999999999
Q ss_pred CCcCcccCCCCCCCCCCCCEEeccccccccc-CCccccCCCCCceeccCCCeeeeecCCCCccccccc----eeeccccc
Q 041558 215 RNNFHGEIPSNREKCPKLGTLGVLMNTITKG-IPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLI----KLILRRNQ 289 (495)
Q Consensus 215 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~----~L~L~~n~ 289 (495)
+|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 9999877777788999999999999999874 588899999999999999999877777787777777 89999999
Q ss_pred ccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccch
Q 041558 290 LVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELP 343 (495)
Q Consensus 290 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 343 (495)
+++..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|++.+..+
T Consensus 189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9966555554 4589999999999999887788999999999999999976543
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.6e-24 Score=200.69 Aligned_cols=204 Identities=21% Similarity=0.183 Sum_probs=175.9
Q ss_pred CCCEEEccccccccCCCccCcccccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccC
Q 041558 136 NPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSR 215 (495)
Q Consensus 136 ~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 215 (495)
..+.++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|+.|++++|.++...+..|..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCC-ccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 3556666666666 3444333 5788888888888877777899999999999999999988888889999999999999
Q ss_pred CcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCC
Q 041558 216 NNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLP 295 (495)
Q Consensus 216 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 295 (495)
|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 99997777788999999999999999999888888999999999999999986666678999999999999999997777
Q ss_pred cccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCcc
Q 041558 296 TEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQE 341 (495)
Q Consensus 296 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 341 (495)
..|..+++|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 7789999999999999999998888899999999999999998654
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.3e-24 Score=201.48 Aligned_cols=206 Identities=26% Similarity=0.219 Sum_probs=110.0
Q ss_pred ccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccE
Q 041558 131 VSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTF 210 (495)
Q Consensus 131 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 210 (495)
+..++++++++++++.++ .+|..+. +.++.|++++|.+++..+..+..+++|+.|++++|.+++..+. +.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 455667777777777665 2333322 4455555555555554445555555555555555555443322 34445555
Q ss_pred EEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccc
Q 041558 211 IDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQL 290 (495)
Q Consensus 211 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l 290 (495)
|++++|.++ .+| ..+..+++|++|++++|.+++..+..|..+++|+.|++++|++
T Consensus 82 L~Ls~N~l~-~l~------------------------~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 82 LDLSHNQLQ-SLP------------------------LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp EECCSSCCS-SCC------------------------CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCc------------------------hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence 555555444 334 4444455555555555555544444455555555555555555
Q ss_pred cccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCC
Q 041558 291 VGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIP 366 (495)
Q Consensus 291 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p 366 (495)
++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|+++ .+|..+...++|+.+++++|++.|.+
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 5444444555555666666666655554445555566666666666654 34444445556666666666664433
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=8.5e-25 Score=202.81 Aligned_cols=229 Identities=21% Similarity=0.139 Sum_probs=133.2
Q ss_pred CccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEe
Q 041558 22 SQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSR 101 (495)
Q Consensus 22 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 101 (495)
+.++..+++..+.+.+. ..+..+++|+.|++++|.+.. + ..+..+++|++|++++|.+++. +.+..+++|++|+
T Consensus 18 ~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred HHHHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence 34455566666666543 235677778888888877553 2 3467778888888888877662 3677788888888
Q ss_pred cCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCccCCCC
Q 041558 102 LSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSC 181 (495)
Q Consensus 102 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 181 (495)
+++|.+++..+..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 92 L~~n~l~~~~~~~~----------------~~l~~L~~L~L~~n~l~~~~~-----------------------~~~~~l 132 (272)
T 3rfs_A 92 LTGNQLQSLPNGVF----------------DKLTNLKELVLVENQLQSLPD-----------------------GVFDKL 132 (272)
T ss_dssp CTTSCCCCCCTTTT----------------TTCTTCCEEECTTSCCCCCCT-----------------------TTTTTC
T ss_pred CCCCccCccChhHh----------------cCCcCCCEEECCCCcCCccCH-----------------------HHhccC
Confidence 88887764444333 334555556666665543333 334444
Q ss_pred CCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceecc
Q 041558 182 TSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDL 261 (495)
Q Consensus 182 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 261 (495)
++|+.|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL 212 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEc
Confidence 55555555555555444444555555555555555555444444555555555555555555544444555555666666
Q ss_pred CCCeeeeecCCCCccccccceeecccccccccCCcccCCCC
Q 041558 262 SLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPI 302 (495)
Q Consensus 262 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 302 (495)
++|.+.+ .+++|+.+++..|.++|.+|..++.+.
T Consensus 213 ~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 213 HDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 6555542 233456666666666666666555443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=7.4e-24 Score=198.00 Aligned_cols=202 Identities=19% Similarity=0.163 Sum_probs=152.7
Q ss_pred hhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-ccccccccccc
Q 041558 90 SFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFN 168 (495)
Q Consensus 90 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n 168 (495)
.+.+++++++++++++.++ .+|..+ .++++.|++++|.+++..+..+.. ++|+.|++++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~------------------~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n 65 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDL------------------PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCC------------------CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS
T ss_pred cccccCCccEEECCCCCCC-cCCCCC------------------CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC
Confidence 5778999999999999884 666543 267899999999999887877777 99999999999
Q ss_pred ccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCc
Q 041558 169 HFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPR 248 (495)
Q Consensus 169 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 248 (495)
.+++..+. ..+++|+.|++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+.
T Consensus 66 ~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 142 (290)
T 1p9a_G 66 ELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG 142 (290)
T ss_dssp CCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred ccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh
Confidence 99865443 78999999999999998 5567788899999999999999877677788888888888888888776555
Q ss_pred cccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcC
Q 041558 249 EIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRF 314 (495)
Q Consensus 249 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 314 (495)
.|..+++|+.|++++|.+++..+..|..+++|+.|++++|+++ .+|..+....+|+.++|++|.+
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 6666667777777766666444444555666666666666665 4454444445555555555544
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.6e-24 Score=200.96 Aligned_cols=231 Identities=20% Similarity=0.179 Sum_probs=187.0
Q ss_pred cCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEE
Q 041558 45 NLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNIL 124 (495)
Q Consensus 45 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 124 (495)
.+.++..+++..+.+... .....+++|+.|++++|.++.. ..+..+++|++|++++|.+.+ ++ .
T Consensus 17 ~~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~-~---------- 80 (272)
T 3rfs_A 17 AFAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS-A---------- 80 (272)
T ss_dssp HHHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG-G----------
T ss_pred hHHHHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch-h----------
Confidence 345666777777765543 3356788889999988887652 357788888888888888753 11 2
Q ss_pred eeecccccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccC
Q 041558 125 EVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGI 204 (495)
Q Consensus 125 ~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 204 (495)
+..+++|++|++++| .+++..+..+..+++|+.|++++|.+++..+..|+.
T Consensus 81 ------l~~l~~L~~L~L~~n-----------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 131 (272)
T 3rfs_A 81 ------LKELTNLTYLILTGN-----------------------QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131 (272)
T ss_dssp ------GTTCTTCCEEECTTS-----------------------CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred ------hcCCCCCCEEECCCC-----------------------ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhcc
Confidence 233444555555544 455555666888999999999999999998888999
Q ss_pred CCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceee
Q 041558 205 YPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLI 284 (495)
Q Consensus 205 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ 284 (495)
+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 132 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence 99999999999999987788889999999999999999987777889999999999999999988777889999999999
Q ss_pred cccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCC
Q 041558 285 LRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLK 327 (495)
Q Consensus 285 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 327 (495)
+++|.+.+. +++|++++++.|.++|.+|..++.++.
T Consensus 212 l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 212 LHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 999998754 557899999999999999988876643
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=4.9e-26 Score=220.31 Aligned_cols=229 Identities=18% Similarity=0.103 Sum_probs=159.8
Q ss_pred EEEeeCCcccccCCccCcCCccCCeeecccCcccccCC----cccccCc-ccceeecccccccccCCccccCC-----CC
Q 041558 3 LLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIP----LSFGNLS-NLIFLYLYENSYFASIPSNVGKL-----KS 72 (495)
Q Consensus 3 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l-----~~ 72 (495)
.++++.|.+++.+|..+...++|++||+++|.+++..+ ..|..++ +|++|+|++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46889999999888877777779999999999997776 6788888 89999999999988877777765 89
Q ss_pred CCeeeccCCcccccCChhhh----cC-CCCCEEecCCCcccccCCccccCCCCCCEEeeecccccC-CCCCCEEEccccc
Q 041558 73 LGDLQLNGNQFISYIPSSFG----NL-TNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSN-LTNPKELALLYNC 146 (495)
Q Consensus 73 L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~L~~L~l~~n~ 146 (495)
|++|++++|.+++..+..+. .+ ++|++|++++|.+++..+..+.. .+.. .++|++|++++|.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~------------~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ------------AFSNLPASITSLNLRGND 149 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH------------HHTTSCTTCCEEECTTSC
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH------------HHHhCCCceeEEEccCCc
Confidence 99999999999876666444 44 89999999999987655544322 2333 3578888899998
Q ss_pred cccCCCccC----cc--cccccccccccccccccCcc----CCCC-CCCCEEEccCceeeec----cCccccC-CCCccE
Q 041558 147 LSGSIPPSL----EN--PMLARLGLDFNHFKRTIPKS----LRSC-TSLIRLCRNRNNLTRD----ISEALGI-YPYLTF 210 (495)
Q Consensus 147 l~~~~~~~~----~~--~~L~~L~l~~n~~~~~~~~~----~~~l-~~L~~L~l~~n~~~~~----~~~~~~~-~~~L~~ 210 (495)
+++..+..+ .. ++|++|++++|.+++..+.. +..+ ++|+.|++++|.+++. ++..+.. .++|++
T Consensus 150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~ 229 (362)
T 3goz_A 150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS 229 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence 876544333 22 36777777777766544432 3334 4677777777766652 2333333 346667
Q ss_pred EEccCCcCcccCC----CCCCCCCCCCEEeccccccc
Q 041558 211 IDLSRNNFHGEIP----SNREKCPKLGTLGVLMNTIT 243 (495)
Q Consensus 211 L~l~~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~ 243 (495)
|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 7777666654322 33455566666666666543
No 81
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=2.1e-27 Score=245.89 Aligned_cols=358 Identities=14% Similarity=0.082 Sum_probs=254.8
Q ss_pred CcEEEeeCC-ccccc-CCccCcCCccCCeeecccCcccccCCcccc----cCcccceeeccccc--ccc-cCCccccCCC
Q 041558 1 MALLIIHNN-SLSGF-IPLNIGNSQFLWGLDLSNNQFSSSIPLSFG----NLSNLIFLYLYENS--YFA-SIPSNVGKLK 71 (495)
Q Consensus 1 L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~n~--~~~-~~~~~~~~l~ 71 (495)
|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+. .+++|++|++++|. +.. .++..+..++
T Consensus 132 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~ 211 (594)
T 2p1m_B 132 FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211 (594)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCT
T ss_pred CcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCC
Confidence 689999999 55543 445556899999999999998876555443 67799999999986 211 1112234579
Q ss_pred CCCeeeccCCcccccCChhhhcCCCCCEEecCCCc-------ccccCCccccCCCCCCEEe-e-------ecccccCCCC
Q 041558 72 SLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNK-------LFVSIPNEIGKMRSLNILE-V-------LPLSVSNLTN 136 (495)
Q Consensus 72 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------~~~~~~~~~~~l~~L~~L~-l-------~~~~l~~~~~ 136 (495)
+|++|++++|...+.++..+..+++|++|+++.+. +. .++..+.++++|+.+. + ++..+..+++
T Consensus 212 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~ 290 (594)
T 2p1m_B 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290 (594)
T ss_dssp TCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTT
T ss_pred CCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCC
Confidence 99999999994333478889999999999966543 32 3455788999999983 3 3444457899
Q ss_pred CCEEEccccccccCCCcc-Ccc-ccccccccccccccc-ccCccCCCCCCCCEEEcc---------CceeeeccCcccc-
Q 041558 137 PKELALLYNCLSGSIPPS-LEN-PMLARLGLDFNHFKR-TIPKSLRSCTSLIRLCRN---------RNNLTRDISEALG- 203 (495)
Q Consensus 137 L~~L~l~~n~l~~~~~~~-~~~-~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~---------~n~~~~~~~~~~~- 203 (495)
|++|++++|.+++..... +.. ++|++|++++| +.. .++.....+++|+.|++. .+.+++.....+.
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~ 369 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence 999999999876543332 223 89999999988 432 233333468999999993 3455544333333
Q ss_pred CCCCccEEEccCCcCcccCCCCCC-CCCCCCEEecc--c----cccccc-----CCccccCCCCCceeccCCCeeeeecC
Q 041558 204 IYPYLTFIDLSRNNFHGEIPSNRE-KCPKLGTLGVL--M----NTITKG-----IPREIRNSSQRQALDLSLNHIIGEIP 271 (495)
Q Consensus 204 ~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~ls~n~l~~~~~ 271 (495)
.+++|+.|++..|.+++.....+. .+++|+.|+++ + +.++.. ++..+..+++|+.|++++ .+++..+
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 489999999999988865544444 58999999999 4 455521 223366789999999987 5654444
Q ss_pred CCCcc-ccccceeecccccccccCCccc-CCCCCCCEEeCCCCcCCCCchh-hhhcCCCCCEEeCcCCcCCccchhHh-h
Q 041558 272 KELGK-LNSLIKLILRRNQLVGCLPTEI-GSPIELEYLDFSVNRFNNLIPE-SLENLLKLHYLGLCKNKLVQELPKIL-E 347 (495)
Q Consensus 272 ~~~~~-~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-~ 347 (495)
..+.. +++|+.|++++|.+++..+..+ ..+++|++|+|++|.+++.... ....+++|+.|++++|+++......+ .
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 528 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence 44444 7899999999999976544444 5689999999999999665443 34568999999999999954433444 4
Q ss_pred cCCCCCeEeccCCC
Q 041558 348 KLVQFSELDLSYNF 361 (495)
Q Consensus 348 ~l~~L~~l~ls~n~ 361 (495)
.++.++...+..+.
T Consensus 529 ~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 529 KMPKLNVEVIDERG 542 (594)
T ss_dssp HCTTEEEEEECSSS
T ss_pred hCCCCEEEEecCCC
Confidence 56777665555543
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1e-23 Score=191.68 Aligned_cols=197 Identities=15% Similarity=0.168 Sum_probs=147.9
Q ss_pred cccccccccccccccccCccCCCCCCCCEEEccCce-eeeccCccccCCCCccEEEccC-CcCcccCCCCCCCCCCCCEE
Q 041558 158 PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNN-LTRDISEALGIYPYLTFIDLSR-NNFHGEIPSNREKCPKLGTL 235 (495)
Q Consensus 158 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L 235 (495)
+++++|++++|.+++..+..|.++++|+.|++++|+ +++..+.+|..+++|++|++++ |.+++..+..|..+++|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 467777777777776666677888888888888886 7777777788888888888887 88876666777788888888
Q ss_pred ecccccccccCCccccCCCCCc---eeccCCC-eeeeecCCCCccccccc-eeecccccccccCCcccCCCCCCCEEeCC
Q 041558 236 GVLMNTITKGIPREIRNSSQRQ---ALDLSLN-HIIGEIPKELGKLNSLI-KLILRRNQLVGCLPTEIGSPIELEYLDFS 310 (495)
Q Consensus 236 ~l~~n~l~~~~~~~~~~l~~L~---~L~ls~n-~l~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 310 (495)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ .|++++|.++...+..|.. ++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 888888877 554 77777777 8888888 77766666678888888 8888888887333333444 778888888
Q ss_pred CCc-CCCCchhhhhcC-CCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCC
Q 041558 311 VNR-FNNLIPESLENL-LKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYN 360 (495)
Q Consensus 311 ~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n 360 (495)
+|. +++..+..|..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 884 877767778888 8888888888888654333 5667778877765
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2e-25 Score=218.22 Aligned_cols=251 Identities=19% Similarity=0.196 Sum_probs=116.2
Q ss_pred cCCccccCCCCCCeeeccCCcccccCC----hhhhcCCCCCEEecCCCc---ccccCCccccCCCCCCEEeeecccccCC
Q 041558 62 SIPSNVGKLKSLGDLQLNGNQFISYIP----SSFGNLTNLSTSRLSKNK---LFVSIPNEIGKMRSLNILEVLPLSVSNL 134 (495)
Q Consensus 62 ~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~l~~~~l~~~ 134 (495)
.++..+..+++|++|+|++|.++...+ ..+..+++|++|+|++|. +.+.+|..+.. +...+..+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~---------l~~~l~~~ 93 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL---------LLQALLKC 93 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH---------HHHHHTTC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH---------HHHHHhhC
Confidence 344555566666677776666655422 234556666666666643 23333333211 11122333
Q ss_pred CCCCEEEccccccccCCCccCcccccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccC----C-----
Q 041558 135 TNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGI----Y----- 205 (495)
Q Consensus 135 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----~----- 205 (495)
++|++|++++|.+++.. ...++..+..+++|+.|++++|.+++..+..+.. +
T Consensus 94 ~~L~~L~Ls~n~l~~~~-------------------~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~ 154 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTA-------------------QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154 (386)
T ss_dssp TTCCEEECCSCCCCTTT-------------------HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccEEECCCCcCCHHH-------------------HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhh
Confidence 44444444443322100 0024445556666666666666665433322222 2
Q ss_pred ----CCccEEEccCCcCc-ccCC---CCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeee---ecCCCC
Q 041558 206 ----PYLTFIDLSRNNFH-GEIP---SNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIG---EIPKEL 274 (495)
Q Consensus 206 ----~~L~~L~l~~n~l~-~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~---~~~~~~ 274 (495)
++|++|++++|.++ +.++ ..+..+++|+.|++++|.+... + ..+..+
T Consensus 155 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~----------------------g~~~l~~~~l 212 (386)
T 2ca6_A 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE----------------------GIEHLLLEGL 212 (386)
T ss_dssp HHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH----------------------HHHHHHHTTG
T ss_pred cccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh----------------------HHHHHHHHHh
Confidence 55555555555554 1222 2233344445555554444411 1 122244
Q ss_pred ccccccceeeccccccc----ccCCcccCCCCCCCEEeCCCCcCCCC----chhhhhc--CCCCCEEeCcCCcCCc----
Q 041558 275 GKLNSLIKLILRRNQLV----GCLPTEIGSPIELEYLDFSVNRFNNL----IPESLEN--LLKLHYLGLCKNKLVQ---- 340 (495)
Q Consensus 275 ~~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~--l~~L~~L~l~~n~l~~---- 340 (495)
..+++|+.|+|++|.++ +.+|..+..+++|++|+|++|.+++. ++..+.. +++|+.|+|++|.+++
T Consensus 213 ~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~ 292 (386)
T 2ca6_A 213 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR 292 (386)
T ss_dssp GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHH
T ss_pred hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHH
Confidence 44455555555555543 23444444455555555555555443 2333322 4555555555555544
Q ss_pred cchhHh-hcCCCCCeEeccCCCC
Q 041558 341 ELPKIL-EKLVQFSELDLSYNFL 362 (495)
Q Consensus 341 ~~~~~~-~~l~~L~~l~ls~n~l 362 (495)
.+|..+ .++++|+.|++++|++
T Consensus 293 ~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 293 TLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp HHHHHHHHHCTTCCEEECTTSBS
T ss_pred HHHHHHHhcCCCceEEEccCCcC
Confidence 244444 3345555555555555
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=3.6e-24 Score=202.62 Aligned_cols=199 Identities=19% Similarity=0.132 Sum_probs=108.8
Q ss_pred cccccccccccccccccCccC--CCCCCCCEEEccCceeeeccC----ccccCCCCccEEEccCCcCcccCCCCCCCCCC
Q 041558 158 PMLARLGLDFNHFKRTIPKSL--RSCTSLIRLCRNRNNLTRDIS----EALGIYPYLTFIDLSRNNFHGEIPSNREKCPK 231 (495)
Q Consensus 158 ~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 231 (495)
++|++|++++|.+++..|..+ ..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555555555544 555555555555555554332 22334556666666666665555555666666
Q ss_pred CCEEeccccccccc--C--CccccCCCCCceeccCCCeeeeecCC----CCccccccceeecccccccccCCcccCCC--
Q 041558 232 LGTLGVLMNTITKG--I--PREIRNSSQRQALDLSLNHIIGEIPK----ELGKLNSLIKLILRRNQLVGCLPTEIGSP-- 301 (495)
Q Consensus 232 L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~ls~n~l~~~~~~----~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-- 301 (495)
|++|++++|++.+. + +..+..+++|++|++++|.++ .++. .+..+++|+.|+|++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 66666666655431 1 122345566666666666664 1111 13445666666666666665555555444
Q ss_pred -CCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCC
Q 041558 302 -IELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL 362 (495)
Q Consensus 302 -~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l 362 (495)
++|++|+|++|.++. +|..+. ++|+.|++++|++++. |. +..+++|+.|++++|++
T Consensus 250 ~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTT
T ss_pred cCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCC
Confidence 466666666666663 344332 5666666666666553 22 34556666666666665
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=6.7e-25 Score=210.39 Aligned_cols=252 Identities=17% Similarity=0.154 Sum_probs=148.1
Q ss_pred cCCeeecccCcccccCCcccccC--cccceeecccccccccCCccccCCCCCCeeeccCCccccc-CChhhhcCCCCCEE
Q 041558 24 FLWGLDLSNNQFSSSIPLSFGNL--SNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISY-IPSSFGNLTNLSTS 100 (495)
Q Consensus 24 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 100 (495)
.++.+++++|.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3677888877765 3456666 7788888888887766554 45678888888888877654 66777788888888
Q ss_pred ecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEcccc-ccccC-CCccCcc-ccccccccccc-ccccc-cC
Q 041558 101 RLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYN-CLSGS-IPPSLEN-PMLARLGLDFN-HFKRT-IP 175 (495)
Q Consensus 101 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n-~l~~~-~~~~~~~-~~L~~L~l~~n-~~~~~-~~ 175 (495)
++++|.+++..+..++ .+++|++|++++| .+++. ++..+.. ++|++|++++| .+++. ++
T Consensus 124 ~L~~~~l~~~~~~~l~----------------~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLA----------------KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp ECTTCBCCHHHHHHHT----------------TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred eCcCcccCHHHHHHHh----------------cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 8888877665555443 3455666666666 44432 2222222 55555556555 55432 34
Q ss_pred ccCCCCC-CCCEEEccCc--eee-eccCccccCCCCccEEEccCCc-CcccCCCCCCCCCCCCEEeccccc-ccccCCcc
Q 041558 176 KSLRSCT-SLIRLCRNRN--NLT-RDISEALGIYPYLTFIDLSRNN-FHGEIPSNREKCPKLGTLGVLMNT-ITKGIPRE 249 (495)
Q Consensus 176 ~~~~~l~-~L~~L~l~~n--~~~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~ 249 (495)
..+..++ +|+.|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.......
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 4455566 6666666666 333 3344455556666666666666 454555555666666666666663 22211123
Q ss_pred ccCCCCCceeccCCCeeeeecCCCCccc-cccceeecccccccccCCcccC
Q 041558 250 IRNSSQRQALDLSLNHIIGEIPKELGKL-NSLIKLILRRNQLVGCLPTEIG 299 (495)
Q Consensus 250 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~ 299 (495)
+..+++|+.|++++| ++ ...+..+ ..+..|++++|.+++..|..++
T Consensus 268 l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCccc
Confidence 455666666666665 21 1123333 2355555566666555554443
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.5e-25 Score=216.83 Aligned_cols=266 Identities=16% Similarity=0.148 Sum_probs=181.3
Q ss_pred eeecccCcccccCCcccccCcccceeecccccccccCC----ccccCCC-CCCeeeccCCcccccCChhhhcC-----CC
Q 041558 27 GLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIP----SNVGKLK-SLGDLQLNGNQFISYIPSSFGNL-----TN 96 (495)
Q Consensus 27 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~ 96 (495)
.+++++|.+++.+|..+...++|++|+|++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999998888777777779999999999887766 6777888 89999999999988777777765 89
Q ss_pred CCEEecCCCcccccCCccccCCCCCCEEeeecccccCC-CCCCEEEccccccccCCCccCcccccccccccccccccccC
Q 041558 97 LSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNL-TNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIP 175 (495)
Q Consensus 97 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 175 (495)
|++|++++|.+++..+..+.. .+..+ ++|++|++++|.+++..+..+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~------------------- 130 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVK------------TLAAIPFTITVLDLGWNDFSSKSSSEFK------------------- 130 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHH------------HHHTSCTTCCEEECCSSCGGGSCHHHHH-------------------
T ss_pred ccEEECcCCcCChHHHHHHHH------------HHHhCCCCccEEECcCCcCCcHHHHHHH-------------------
Confidence 999999999987665554432 23344 6777778888877654332221
Q ss_pred ccCCC-CCCCCEEEccCceeeec----cCccccCCC-CccEEEccCCcCcccCCCC----CCCC-CCCCEEecccccccc
Q 041558 176 KSLRS-CTSLIRLCRNRNNLTRD----ISEALGIYP-YLTFIDLSRNNFHGEIPSN----REKC-PKLGTLGVLMNTITK 244 (495)
Q Consensus 176 ~~~~~-l~~L~~L~l~~n~~~~~----~~~~~~~~~-~L~~L~l~~n~l~~~~~~~----~~~~-~~L~~L~l~~n~l~~ 244 (495)
..+.. +++|+.|++++|.+++. ++..+..++ +|++|++++|.+++..+.. +..+ ++|+.|++++|.+.+
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 12223 24666666666666532 223334444 6777777777776544432 2333 477777777777766
Q ss_pred c----CCccccC-CCCCceeccCCCeeeeecC----CCCccccccceeeccccccccc-------CCcccCCCCCCCEEe
Q 041558 245 G----IPREIRN-SSQRQALDLSLNHIIGEIP----KELGKLNSLIKLILRRNQLVGC-------LPTEIGSPIELEYLD 308 (495)
Q Consensus 245 ~----~~~~~~~-l~~L~~L~ls~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~ 308 (495)
. ++..+.. .++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+. ++..+..+++|+.||
T Consensus 211 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~Ld 290 (362)
T 3goz_A 211 KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290 (362)
T ss_dssp SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred hHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEe
Confidence 3 3344444 3588888888888865332 3456778899999999985432 334567888899999
Q ss_pred CCCCcCCCCchhhhh
Q 041558 309 FSVNRFNNLIPESLE 323 (495)
Q Consensus 309 Ls~n~l~~~~~~~~~ 323 (495)
+++|.+.+..+..+.
T Consensus 291 L~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 291 KNGKEIHPSHSIPIS 305 (362)
T ss_dssp TTSCBCCGGGCHHHH
T ss_pred cCCCcCCCcchHHHH
Confidence 999998876444443
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=4.3e-26 Score=222.90 Aligned_cols=247 Identities=18% Similarity=0.168 Sum_probs=162.5
Q ss_pred cCCccCcCCccCCeeecccCcccccCC----cccccCcccceeecccc---cccccCCccc-------cCCCCCCeeecc
Q 041558 14 FIPLNIGNSQFLWGLDLSNNQFSSSIP----LSFGNLSNLIFLYLYEN---SYFASIPSNV-------GKLKSLGDLQLN 79 (495)
Q Consensus 14 ~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n---~~~~~~~~~~-------~~l~~L~~L~l~ 79 (495)
.++..+..+++|++|+|++|.+++..+ ..|..+++|++|+|++| ++.+.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 356667778888888888888876533 33667888888888885 3444555544 577888888888
Q ss_pred CCcccc----cCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCC---------CCCCEEEccccc
Q 041558 80 GNQFIS----YIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNL---------TNPKELALLYNC 146 (495)
Q Consensus 80 ~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~---------~~L~~L~l~~n~ 146 (495)
+|.++. .+|..+..+++|++|+|++|.++...+..+.. .+..+ ++|++|++++|.
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~------------~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR------------ALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH------------HHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH------------HHHHHhhhhhcccCCCCcEEECCCCC
Confidence 888876 46677788888888888888875443333321 12222 556666666665
Q ss_pred cccCCCccCcccccccccccccccccccC---ccCCCCCCCCEEEccCceeee-----ccCccccCCCCccEEEccCCcC
Q 041558 147 LSGSIPPSLENPMLARLGLDFNHFKRTIP---KSLRSCTSLIRLCRNRNNLTR-----DISEALGIYPYLTFIDLSRNNF 218 (495)
Q Consensus 147 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~L~l~~n~l 218 (495)
++. +.++ ..+..+++|+.|++++|.++. ..+..+..+++|+.|++++|.+
T Consensus 171 l~~----------------------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 171 LEN----------------------GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp CTG----------------------GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred CCc----------------------HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 541 1122 234456666677777666652 2333566667777777777776
Q ss_pred c----ccCCCCCCCCCCCCEEeccccccccc----CCcccc--CCCCCceeccCCCeeee----ecCCCC-cccccccee
Q 041558 219 H----GEIPSNREKCPKLGTLGVLMNTITKG----IPREIR--NSSQRQALDLSLNHIIG----EIPKEL-GKLNSLIKL 283 (495)
Q Consensus 219 ~----~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~--~l~~L~~L~ls~n~l~~----~~~~~~-~~~~~L~~L 283 (495)
+ ..+|..+..+++|+.|++++|.+++. ++..+. .+++|+.|++++|.+++ .+|..+ ..+++|+.|
T Consensus 229 ~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L 308 (386)
T 2ca6_A 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308 (386)
T ss_dssp HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence 4 34566666677777777777777654 344442 37778888888888775 366555 456788888
Q ss_pred ecccccccccC
Q 041558 284 ILRRNQLVGCL 294 (495)
Q Consensus 284 ~L~~n~l~~~~ 294 (495)
++++|.+++..
T Consensus 309 ~l~~N~l~~~~ 319 (386)
T 2ca6_A 309 ELNGNRFSEED 319 (386)
T ss_dssp ECTTSBSCTTS
T ss_pred EccCCcCCcch
Confidence 88888887554
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=1.6e-22 Score=185.23 Aligned_cols=156 Identities=19% Similarity=0.165 Sum_probs=78.2
Q ss_pred CccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecc
Q 041558 207 YLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILR 286 (495)
Q Consensus 207 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~ 286 (495)
+++.|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|+|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 34444444444444444444444444444444444444444444444444555555554443333444455555555555
Q ss_pred cccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCC
Q 041558 287 RNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL 362 (495)
Q Consensus 287 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l 362 (495)
+|.+++..+..|..+++|++|+|++|.+++..+..|+.+++|+.|++++|++++..+..+..+++|+.|++++|++
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 5555544444445555555555555555554444555555555555555555554444555555555555555555
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=1.2e-22 Score=186.08 Aligned_cols=181 Identities=18% Similarity=0.183 Sum_probs=165.8
Q ss_pred cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEec
Q 041558 158 PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGV 237 (495)
Q Consensus 158 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 237 (495)
...++++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 46778999999887 4565554 68999999999999999999999999999999999999888888999999999999
Q ss_pred ccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCC
Q 041558 238 LMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNL 317 (495)
Q Consensus 238 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 317 (495)
++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|++|+|++|.+++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999998888899999999999999999977666789999999999999999977777899999999999999999999
Q ss_pred chhhhhcCCCCCEEeCcCCcCCcc
Q 041558 318 IPESLENLLKLHYLGLCKNKLVQE 341 (495)
Q Consensus 318 ~~~~~~~l~~L~~L~l~~n~l~~~ 341 (495)
.+..+..+++|+.|++++|++.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 888999999999999999999775
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=5.5e-23 Score=194.49 Aligned_cols=201 Identities=24% Similarity=0.242 Sum_probs=156.1
Q ss_pred CCCCEEEccccccccCCCccC--cc-cccccccccccccccccC----ccCCCCCCCCEEEccCceeeeccCccccCCCC
Q 041558 135 TNPKELALLYNCLSGSIPPSL--EN-PMLARLGLDFNHFKRTIP----KSLRSCTSLIRLCRNRNNLTRDISEALGIYPY 207 (495)
Q Consensus 135 ~~L~~L~l~~n~l~~~~~~~~--~~-~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 207 (495)
++|++|++++|.+.+..|..+ .. ++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..|+.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555555555554 33 666666666666665433 23457889999999999999888899999999
Q ss_pred ccEEEccCCcCccc--C--CCCCCCCCCCCEEecccccccccC--Cc-cccCCCCCceeccCCCeeeeecCCCCccc---
Q 041558 208 LTFIDLSRNNFHGE--I--PSNREKCPKLGTLGVLMNTITKGI--PR-EIRNSSQRQALDLSLNHIIGEIPKELGKL--- 277 (495)
Q Consensus 208 L~~L~l~~n~l~~~--~--~~~~~~~~~L~~L~l~~n~l~~~~--~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~--- 277 (495)
|++|++++|++.+. + +..+..+++|++|++++|.++... +. .+..+++|++|++++|.+.+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 99999999987652 2 334478899999999999997421 11 35678999999999999998878777776
Q ss_pred cccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCc
Q 041558 278 NSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQ 340 (495)
Q Consensus 278 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 340 (495)
++|+.|++++|+++ .+|..+. ++|++|+|++|.+++. |. +..+++|+.|++++|+++.
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 69999999999999 6777664 8999999999999986 32 6888999999999999864
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=9.6e-23 Score=185.25 Aligned_cols=194 Identities=18% Similarity=0.186 Sum_probs=146.8
Q ss_pred CCCEEEccccccccCCCccCcc-cccccccccccc-cccccCccCCCCCCCCEEEccC-ceeeeccCccccCCCCccEEE
Q 041558 136 NPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNH-FKRTIPKSLRSCTSLIRLCRNR-NNLTRDISEALGIYPYLTFID 212 (495)
Q Consensus 136 ~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~ 212 (495)
++++|++++|++++..+..+.. ++|++|++++|. ++...+..|.++++|+.|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 3444444444444443334433 555666666664 5555556778888888888888 888888888888888999999
Q ss_pred ccCCcCcccCCCCCCCCCCCC---EEecccc-cccccCCccccCCCCCc-eeccCCCeeeeecCC-CCccccccceeecc
Q 041558 213 LSRNNFHGEIPSNREKCPKLG---TLGVLMN-TITKGIPREIRNSSQRQ-ALDLSLNHIIGEIPK-ELGKLNSLIKLILR 286 (495)
Q Consensus 213 l~~n~l~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~ls~n~l~~~~~~-~~~~~~~L~~L~L~ 286 (495)
+++|.+++ +|. +..+++|+ .|++++| .+.+..+..|..+++|+ +|++++|.++ .+|. .+.. ++|+.|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence 99888885 665 78888888 9999999 88887777788899999 9999999988 4554 4444 789999999
Q ss_pred ccc-ccccCCcccCCC-CCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCC
Q 041558 287 RNQ-LVGCLPTEIGSP-IELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKN 336 (495)
Q Consensus 287 ~n~-l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 336 (495)
+|+ +++..+..|..+ ++|+.|++++|.+++..+. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 995 886667788888 8999999999999876543 5678889988776
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=3e-24 Score=205.81 Aligned_cols=229 Identities=15% Similarity=0.135 Sum_probs=171.6
Q ss_pred CCCCEEEccccccccCCCccCcccccccccccccccccc-cCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEc
Q 041558 135 TNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRT-IPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDL 213 (495)
Q Consensus 135 ~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 213 (495)
++++.+++++|.+.+..+..+..++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 445556666666665555544346777777777776654 6677888899999999999888888888888999999999
Q ss_pred cCC-cCccc-CCCCCCCCCCCCEEecccc-ccccc-CCccccCCC-CCceeccCCC--eee-eecCCCCccccccceeec
Q 041558 214 SRN-NFHGE-IPSNREKCPKLGTLGVLMN-TITKG-IPREIRNSS-QRQALDLSLN--HII-GEIPKELGKLNSLIKLIL 285 (495)
Q Consensus 214 ~~n-~l~~~-~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~ls~n--~l~-~~~~~~~~~~~~L~~L~L 285 (495)
++| .+++. ++..+..+++|+.|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 998 67653 5666777889999999999 88764 566678888 9999999998 454 455666778899999999
Q ss_pred cccc-ccccCCcccCCCCCCCEEeCCCCc-CCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcC-CCCCeEeccCCCC
Q 041558 286 RRNQ-LVGCLPTEIGSPIELEYLDFSVNR-FNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKL-VQFSELDLSYNFL 362 (495)
Q Consensus 286 ~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~l~ls~n~l 362 (495)
++|. +++..+..+..+++|++|++++|. +.......++.+++|+.|++++| ++.. .+..+ ..+..|++++|.+
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccC
Confidence 9998 776777788889999999999995 33332336788999999999998 5432 22333 2366777899999
Q ss_pred -CCCCC
Q 041558 363 -GPIPN 367 (495)
Q Consensus 363 -~~~p~ 367 (495)
+..|.
T Consensus 306 ~~~~~~ 311 (336)
T 2ast_B 306 TTIARP 311 (336)
T ss_dssp CCTTCS
T ss_pred ccccCC
Confidence 55554
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.9e-22 Score=189.03 Aligned_cols=193 Identities=22% Similarity=0.222 Sum_probs=129.0
Q ss_pred cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEec
Q 041558 158 PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGV 237 (495)
Q Consensus 158 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 237 (495)
++|++|++++|.++. ++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 445555555555443 22 35666677777777776665544 6667777777777777664 22 4666777777777
Q ss_pred ccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCC
Q 041558 238 LMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNL 317 (495)
Q Consensus 238 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 317 (495)
++|.+++. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++. +. +..+++|+.|++++|.+++.
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~ 188 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI 188 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC
Confidence 77777663 2 26677777777777777764333 66777777777777777743 33 67777788888888877765
Q ss_pred chhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCC
Q 041558 318 IPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIP 366 (495)
Q Consensus 318 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p 366 (495)
.+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++...|
T Consensus 189 ~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp GG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred hh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence 43 6777778888888887766543 667777888888888775544
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=6.2e-22 Score=186.78 Aligned_cols=192 Identities=22% Similarity=0.253 Sum_probs=106.3
Q ss_pred CCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEE
Q 041558 21 NSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTS 100 (495)
Q Consensus 21 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 100 (495)
++++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. +.+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 44555555555555542 22 34555555555555555443222 55555555555555555442 235555555555
Q ss_pred ecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCccCCC
Q 041558 101 RLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRS 180 (495)
Q Consensus 101 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 180 (495)
++++|.+++ ++. +..+ ++|++|++++|.+++..+ +..
T Consensus 113 ~l~~n~l~~-~~~-----------------l~~l-----------------------~~L~~L~l~~n~l~~~~~--l~~ 149 (308)
T 1h6u_A 113 DLTSTQITD-VTP-----------------LAGL-----------------------SNLQVLYLDLNQITNISP--LAG 149 (308)
T ss_dssp ECTTSCCCC-CGG-----------------GTTC-----------------------TTCCEEECCSSCCCCCGG--GGG
T ss_pred ECCCCCCCC-chh-----------------hcCC-----------------------CCCCEEECCCCccCcCcc--ccC
Confidence 555555432 111 2233 444444444444443322 556
Q ss_pred CCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceec
Q 041558 181 CTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALD 260 (495)
Q Consensus 181 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 260 (495)
+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+.. .+..+++|+.|+
T Consensus 150 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~ 223 (308)
T 1h6u_A 150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVT 223 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEE
T ss_pred CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEE
Confidence 6667777777776665433 6666777777777777664332 566677777777777776643 266677777777
Q ss_pred cCCCeee
Q 041558 261 LSLNHII 267 (495)
Q Consensus 261 ls~n~l~ 267 (495)
+++|.++
T Consensus 224 l~~N~i~ 230 (308)
T 1h6u_A 224 LTNQTIT 230 (308)
T ss_dssp EEEEEEE
T ss_pred ccCCeee
Confidence 7777775
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=6.6e-21 Score=183.31 Aligned_cols=240 Identities=16% Similarity=0.093 Sum_probs=180.6
Q ss_pred cEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCC-ccccCCCCCCe-eecc
Q 041558 2 ALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIP-SNVGKLKSLGD-LQLN 79 (495)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~-L~l~ 79 (495)
++++-++++++ .+|..+. +++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45677888998 7887773 689999999999997777789999999999999999877555 57889998876 5667
Q ss_pred CCcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccc-cccccCCCccCcc-
Q 041558 80 GNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLY-NCLSGSIPPSLEN- 157 (495)
Q Consensus 80 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~- 157 (495)
.|++++..|..|.++++|++|++++|++....+..+. ...++..+++.+ +.+....+..+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~----------------~~~~l~~l~l~~~~~i~~l~~~~f~~~ 152 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI----------------HSLQKVLLDIQDNINIHTIERNSFVGL 152 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC----------------CBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhc----------------ccchhhhhhhccccccccccccchhhc
Confidence 7899988889999999999999999998654333332 233455666655 4555444444444
Q ss_pred -cccccccccccccccccCccCCCCCCCCEEEccC-ceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEE
Q 041558 158 -PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNR-NNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTL 235 (495)
Q Consensus 158 -~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 235 (495)
..++.|++++|.++.. +.......+|+.+++.+ |.++...+++|+.+++|++|++++|+++...+.. +.+|+.|
T Consensus 153 ~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L 228 (350)
T 4ay9_X 153 SFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKL 228 (350)
T ss_dssp BSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEE
T ss_pred chhhhhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHh
Confidence 5688899999999854 44444567899999975 6677776778899999999999999998444333 4566666
Q ss_pred ecccccccccCCccccCCCCCceeccCCCe
Q 041558 236 GVLMNTITKGIPREIRNSSQRQALDLSLNH 265 (495)
Q Consensus 236 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~ 265 (495)
.+.++.-...+| .+..+++|+.++++++.
T Consensus 229 ~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 229 RARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp ECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred hhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 666655445566 47788999999988653
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=4.8e-21 Score=184.24 Aligned_cols=199 Identities=16% Similarity=0.108 Sum_probs=117.2
Q ss_pred CeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCC-hhhhcCCCCCE-EecC
Q 041558 26 WGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIP-SSFGNLTNLST-SRLS 103 (495)
Q Consensus 26 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l~ 103 (495)
++++.++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+| .+|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57788888888 566655 3578888888888887666778888888888888888766444 46778887765 4555
Q ss_pred CCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-cccccccccc-cccccccCccCCCC
Q 041558 104 KNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDF-NHFKRTIPKSLRSC 181 (495)
Q Consensus 104 ~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~-n~~~~~~~~~~~~l 181 (495)
.|++....|.. +..+++|+.|++++|.+....+..+.. .++..+++.+ +.+....+..|..+
T Consensus 89 ~N~l~~l~~~~----------------f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~ 152 (350)
T 4ay9_X 89 ANNLLYINPEA----------------FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152 (350)
T ss_dssp ETTCCEECTTS----------------BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred CCcccccCchh----------------hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc
Confidence 67765443443 444566677777777776544433332 4455555543 34443333444444
Q ss_pred C-CCCEEEccCceeeeccCccccCCCCccEEEccC-CcCcccCCCCCCCCCCCCEEecccccccc
Q 041558 182 T-SLIRLCRNRNNLTRDISEALGIYPYLTFIDLSR-NNFHGEIPSNREKCPKLGTLGVLMNTITK 244 (495)
Q Consensus 182 ~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 244 (495)
. .++.|++++|+++...+..|. ..+|+.+++++ |.++...+..|..+++|+.|++++|+++.
T Consensus 153 ~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 153 SFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp BSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred chhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 3 355555555555544444332 23455555543 33332222344455555555555555544
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=2.1e-20 Score=189.10 Aligned_cols=149 Identities=24% Similarity=0.280 Sum_probs=87.4
Q ss_pred CCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceec
Q 041558 181 CTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALD 260 (495)
Q Consensus 181 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 260 (495)
+++|+.|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|+
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLS 166 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEE
Confidence 4555555555555555 333 332 56666666666654 444 35566666666666655 333 345666666
Q ss_pred cCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCC-------CEEeCCCCcCCCCchhhhhcCCCCCEEeC
Q 041558 261 LSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIEL-------EYLDFSVNRFNNLIPESLENLLKLHYLGL 333 (495)
Q Consensus 261 ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l 333 (495)
+++|.+++ +|. +. ++|+.|+|++|.++ .+|. +.. +| +.|+|++|.|+. +|..+..+++|+.|+|
T Consensus 167 Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 167 VRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIIL 237 (571)
T ss_dssp CCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEEC
T ss_pred CCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEe
Confidence 66666654 444 44 56666666666666 4554 433 55 777777777765 4555566777777777
Q ss_pred cCCcCCccchhHhhcCC
Q 041558 334 CKNKLVQELPKILEKLV 350 (495)
Q Consensus 334 ~~n~l~~~~~~~~~~l~ 350 (495)
++|++++.+|..+..+.
T Consensus 238 ~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 238 EDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CSSSCCHHHHHHHHHHH
T ss_pred eCCcCCCcCHHHHHHhh
Confidence 77777777776666543
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=9.3e-21 Score=168.20 Aligned_cols=162 Identities=19% Similarity=0.112 Sum_probs=100.7
Q ss_pred CCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceecc
Q 041558 182 TSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDL 261 (495)
Q Consensus 182 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 261 (495)
++|+.|++++|.+++..+..|+.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35666666666666555555666666666666666666544445566666666666666666544455566666666666
Q ss_pred CCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCcc
Q 041558 262 SLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQE 341 (495)
Q Consensus 262 s~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 341 (495)
++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|+++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 6666665444456666667777777776665555556666677777777765543 334566667777777777
Q ss_pred chhHhhcCC
Q 041558 342 LPKILEKLV 350 (495)
Q Consensus 342 ~~~~~~~l~ 350 (495)
+|..++.++
T Consensus 181 ip~~~~~l~ 189 (208)
T 2o6s_A 181 VRNSAGSVA 189 (208)
T ss_dssp BBCTTSSBC
T ss_pred eeccCcccc
Confidence 766655544
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=7.4e-21 Score=170.08 Aligned_cols=159 Identities=19% Similarity=0.163 Sum_probs=128.1
Q ss_pred cEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCC-ccccCCCCCceeccCCCeeeeecCCCCccccccceeeccc
Q 041558 209 TFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIP-REIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRR 287 (495)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~ 287 (495)
+.+++++|.++ .+|..+. +.++.|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|+.|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777777776 4565443 356788888888877644 4577888888888888888877777888888999999999
Q ss_pred ccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCC
Q 041558 288 NQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPN 367 (495)
Q Consensus 288 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~ 367 (495)
|.+++..+..|..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..|..+..+++|+.|++++|++.+.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99987777778888999999999999988888888889999999999999988888888889999999999999955444
Q ss_pred ccc
Q 041558 368 SIA 370 (495)
Q Consensus 368 ~~~ 370 (495)
..+
T Consensus 171 l~~ 173 (220)
T 2v70_A 171 LAW 173 (220)
T ss_dssp GHH
T ss_pred hHH
Confidence 333
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=8.9e-21 Score=168.32 Aligned_cols=174 Identities=20% Similarity=0.119 Sum_probs=136.1
Q ss_pred CEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCC
Q 041558 185 IRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLN 264 (495)
Q Consensus 185 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 264 (495)
+.++.+++.++..... ..++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4556666655543322 2457888899888888766667788888999999988888766667788888899999988
Q ss_pred eeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchh
Q 041558 265 HIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPK 344 (495)
Q Consensus 265 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 344 (495)
.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 8886666667888889999999888887666677888889999999888888777778888888999998888764
Q ss_pred HhhcCCCCCeEeccCCCC-CCCCCc
Q 041558 345 ILEKLVQFSELDLSYNFL-GPIPNS 368 (495)
Q Consensus 345 ~~~~l~~L~~l~ls~n~l-~~~p~~ 368 (495)
.++.|+.|+++.|.+ +.+|..
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCT
T ss_pred ---CCCCHHHHHHHHHhCCceeecc
Confidence 345778888888888 777754
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=2.5e-20 Score=166.65 Aligned_cols=160 Identities=23% Similarity=0.241 Sum_probs=120.3
Q ss_pred cEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccc
Q 041558 209 TFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRN 288 (495)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 288 (495)
+.++++++.++ .+|..+. ++++.|++++|.+.+..+..|..+++|+.|++++|.+++..|..|..+++|+.|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666666666 4555443 56777777777777766667777778888888888887777777888888888888888
Q ss_pred cccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCCc
Q 041558 289 QLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNS 368 (495)
Q Consensus 289 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~~ 368 (495)
.++...+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 88855555677788888888888888887777888888888888888888777777788888888888888888555544
Q ss_pred ccc
Q 041558 369 IAF 371 (495)
Q Consensus 369 ~~~ 371 (495)
.|+
T Consensus 171 ~~l 173 (220)
T 2v9t_B 171 KWL 173 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=3.1e-20 Score=187.81 Aligned_cols=188 Identities=27% Similarity=0.341 Sum_probs=116.9
Q ss_pred CCCeeeccCCcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCC
Q 041558 72 SLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSI 151 (495)
Q Consensus 72 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~ 151 (495)
+|++|++++|.+++ +|..+ .++|+.|++++|.++ .+| . .+++|+.|++++|.+++ +
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip-~------------------~l~~L~~L~Ls~N~l~~-i 115 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP-E------------------LPASLEYLDACDNRLST-L 115 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC-C------------------CCTTCCEEECCSSCCSC-C
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc-c------------------ccCCCCEEEccCCCCCC-c
Confidence 77888888887776 55544 267778888777775 344 1 13455666666666554 3
Q ss_pred CccCcccccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCC
Q 041558 152 PPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPK 231 (495)
Q Consensus 152 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 231 (495)
|. +.. +|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++
T Consensus 116 p~------------------------l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~ 161 (571)
T 3cvr_A 116 PE------------------------LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTS 161 (571)
T ss_dssp CC------------------------CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTT
T ss_pred ch------------------------hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCC
Confidence 33 222 55555555555554 222 34556666666666653 443 3456
Q ss_pred CCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCcccccc-------ceeecccccccccCCcccCCCCCC
Q 041558 232 LGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSL-------IKLILRRNQLVGCLPTEIGSPIEL 304 (495)
Q Consensus 232 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L-------~~L~L~~n~l~~~~~~~~~~l~~L 304 (495)
|+.|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|+|++|.++ .+|..+..+++|
T Consensus 162 L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L 232 (571)
T 3cvr_A 162 LEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPT 232 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTT
T ss_pred cCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCC
Confidence 6666666666655 444 43 66666666666666 4554 443 55 88888888888 577777778888
Q ss_pred CEEeCCCCcCCCCchhhhhcCC
Q 041558 305 EYLDFSVNRFNNLIPESLENLL 326 (495)
Q Consensus 305 ~~L~Ls~n~l~~~~~~~~~~l~ 326 (495)
+.|+|++|.+++.+|..+..++
T Consensus 233 ~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 233 CTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp EEEECCSSSCCHHHHHHHHHHH
T ss_pred CEEEeeCCcCCCcCHHHHHHhh
Confidence 8888888888888887777654
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=6.1e-20 Score=177.25 Aligned_cols=160 Identities=26% Similarity=0.186 Sum_probs=88.7
Q ss_pred CccEEEccCCcCcccCCCCCC-CCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeec
Q 041558 207 YLTFIDLSRNNFHGEIPSNRE-KCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLIL 285 (495)
Q Consensus 207 ~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L 285 (495)
.++.|++++|.+++..+..+. .+++|+.|++++|.+++..+..|..+++|++|+|++|.+.+..+..|..+++|+.|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 345555555555544444444 5555555555555555544445555555555555555555444445555556666666
Q ss_pred ccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhh---hcCCCCCEEeCcCCcCCccchhHhhcCCC--CCeEeccCC
Q 041558 286 RRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESL---ENLLKLHYLGLCKNKLVQELPKILEKLVQ--FSELDLSYN 360 (495)
Q Consensus 286 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~l~ls~n 360 (495)
++|.+++..|..|..+++|++|+|++|.+++..+..| ..+++|+.|+|++|++++..+..+..++. ++.|++++|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 6666655555555566666666666666655444444 34566666666666665555555555554 356666666
Q ss_pred CCCCCC
Q 041558 361 FLGPIP 366 (495)
Q Consensus 361 ~l~~~p 366 (495)
++.|.+
T Consensus 200 ~~~C~C 205 (361)
T 2xot_A 200 PLECDC 205 (361)
T ss_dssp CEECCH
T ss_pred CccCCc
Confidence 664433
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.6e-19 Score=174.41 Aligned_cols=177 Identities=24% Similarity=0.155 Sum_probs=146.5
Q ss_pred ccccccccccccccCccCCCCCCCCEEEccCceeeeccCcccc-CCCCccEEEccCCcCcccCCCCCCCCCCCCEEeccc
Q 041558 161 ARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALG-IYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLM 239 (495)
Q Consensus 161 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 239 (495)
+.++++++.++. +|..+. ..++.|++++|.+++..+..|. .+++|++|++++|++++..+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666653 454443 4578888888888888888887 888999999999999877778888999999999999
Q ss_pred ccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCccc---CCCCCCCEEeCCCCcCCC
Q 041558 240 NTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEI---GSPIELEYLDFSVNRFNN 316 (495)
Q Consensus 240 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~ 316 (495)
|.+.+..+..|..+++|++|+|++|.+.+..+..|..+++|+.|+|++|.+++..+..| ..+++|+.|+|++|.+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99988777788899999999999999998888889999999999999999995444444 568999999999999999
Q ss_pred CchhhhhcCCC--CCEEeCcCCcCCc
Q 041558 317 LIPESLENLLK--LHYLGLCKNKLVQ 340 (495)
Q Consensus 317 ~~~~~~~~l~~--L~~L~l~~n~l~~ 340 (495)
..+..+..++. ++.|++++|++..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 88888888887 4889999999864
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=5.9e-20 Score=171.67 Aligned_cols=191 Identities=21% Similarity=0.255 Sum_probs=142.8
Q ss_pred cccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEeccc
Q 041558 160 LARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLM 239 (495)
Q Consensus 160 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 239 (495)
+..+.+..+.+++.. .+..+++|+.|++++|.+... ..+..+++|++|++++|.+++..+ +..+++|+.|++++
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 344455555554432 234677888888888887655 236778888888888888875433 77888888888888
Q ss_pred ccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCch
Q 041558 240 NTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIP 319 (495)
Q Consensus 240 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 319 (495)
|.+.+ + ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+
T Consensus 100 n~l~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 100 NKVKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp SCCCC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 88876 2 3477888888888888888743 3577888888888888888854 567788888888888888887654
Q ss_pred hhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCC
Q 041558 320 ESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIP 366 (495)
Q Consensus 320 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p 366 (495)
+..+++|+.|++++|.+++. + .+..+++|+.|++++|++...|
T Consensus 174 --l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred --hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence 88888888888888888664 3 3778888888888888885444
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=5.5e-19 Score=158.99 Aligned_cols=154 Identities=21% Similarity=0.162 Sum_probs=88.8
Q ss_pred cEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccc
Q 041558 209 TFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRN 288 (495)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 288 (495)
+.++.+++.++ .+|..+. ++|+.|++++|.+.+..|..|..+++|++|++++|.+....+..|..+++|+.|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 34455555544 3443332 45555555555555555555555556666666666655333344556666666666666
Q ss_pred cccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCC
Q 041558 289 QLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIP 366 (495)
Q Consensus 289 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p 366 (495)
.+++..+..|..+++|++|+|++|.++. +|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.+
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 6665444555666666666666666663 3555666666666666666666555555666666666666666664333
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=5.2e-19 Score=158.07 Aligned_cols=153 Identities=19% Similarity=0.147 Sum_probs=110.9
Q ss_pred CEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCC
Q 041558 185 IRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLN 264 (495)
Q Consensus 185 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 264 (495)
+.++.+++.++.. |..+ .++++.|++++|.+++..+..|..+++|+.|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~i-P~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSC-CSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcC-CCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3455555555433 2222 246677777777777666666777777777777777777766777777777777777777
Q ss_pred eeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCc
Q 041558 265 HIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQ 340 (495)
Q Consensus 265 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 340 (495)
.++...+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..+..|..+++|+.|++++|++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 7775444556778888888888888887777788888888888888888888777778888888888888888754
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=159.07 Aligned_cols=154 Identities=20% Similarity=0.196 Sum_probs=102.2
Q ss_pred EEEccCceeeeccCccccCCCCccEEEccCCcCcccCC-CCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCC
Q 041558 186 RLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIP-SNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLN 264 (495)
Q Consensus 186 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 264 (495)
.+++++|.++.. |..+ .+.+++|++++|.+++..+ ..+..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 455555555432 2222 2344566666666665433 33556666666666666666655556666677777777777
Q ss_pred eeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccc
Q 041558 265 HIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQEL 342 (495)
Q Consensus 265 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 342 (495)
.+++..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..|..|..+++|+.|++++|++.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 776555556677777777777777777666777777777888888888887777777778888888888888876543
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.5e-18 Score=156.22 Aligned_cols=155 Identities=17% Similarity=0.091 Sum_probs=115.3
Q ss_pred CCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCC
Q 041558 184 LIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSL 263 (495)
Q Consensus 184 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~ 263 (495)
.+.++.+++.+..... .+ .++|++|++++|.+++..|..+..+++|+.|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3455555555543322 22 26677777777777766677777777777777777777665556677778888888888
Q ss_pred CeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccc
Q 041558 264 NHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQEL 342 (495)
Q Consensus 264 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 342 (495)
|.+++..+..|..+++|+.|++++|+++ .+|..+..+++|++|+|++|.+++..+..+..+++|+.|++++|++....
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 8887665666778888888888888888 67777888888888888888888877777888888999999999887654
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=2.1e-19 Score=167.90 Aligned_cols=170 Identities=22% Similarity=0.269 Sum_probs=132.2
Q ss_pred cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEec
Q 041558 158 PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGV 237 (495)
Q Consensus 158 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 237 (495)
++|+.|++++|.+... + .+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++
T Consensus 46 ~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 4556666666655533 2 36777888888888888877655 7788888888888888874 33 3778888888888
Q ss_pred ccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCC
Q 041558 238 LMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNL 317 (495)
Q Consensus 238 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 317 (495)
++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++.
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC
Confidence 88888773 4677888899999999988754 467888899999999999986544 88889999999999999875
Q ss_pred chhhhhcCCCCCEEeCcCCcCCcc
Q 041558 318 IPESLENLLKLHYLGLCKNKLVQE 341 (495)
Q Consensus 318 ~~~~~~~l~~L~~L~l~~n~l~~~ 341 (495)
+ .+..+++|+.|++++|+++..
T Consensus 194 -~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 194 -R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp -G-GGTTCTTCSEEEEEEEEEECC
T ss_pred -h-hhccCCCCCEEECcCCcccCC
Confidence 3 488899999999999988653
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=4.2e-19 Score=181.60 Aligned_cols=191 Identities=21% Similarity=0.224 Sum_probs=111.4
Q ss_pred ccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEec
Q 041558 23 QFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRL 102 (495)
Q Consensus 23 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 102 (495)
..+..+.++.+.+.+..+ +..+++|+.|++++|.+.. +| .+..+++|++|+|++|.+++..+ +..+++|+.|+|
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 344445555555553332 4556666666666666543 22 36666666666666666665433 666666666666
Q ss_pred CCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-cccccccccccccccccCccCCCC
Q 041558 103 SKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIPKSLRSC 181 (495)
Q Consensus 103 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l 181 (495)
++|.+.+ +| .+..+++|+.|++++|.+.+. + .+.. ++|+.|+|++|.+++. ..+..+
T Consensus 95 s~N~l~~-l~-----------------~l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l 152 (605)
T 1m9s_A 95 DENKIKD-LS-----------------SLKDLKKLKSLSLEHNGISDI-N-GLVHLPQLESLYLGNNKITDI--TVLSRL 152 (605)
T ss_dssp CSSCCCC-CT-----------------TSTTCTTCCEEECTTSCCCCC-G-GGGGCTTCSEEECCSSCCCCC--GGGGSC
T ss_pred cCCCCCC-Ch-----------------hhccCCCCCEEEecCCCCCCC-c-cccCCCccCEEECCCCccCCc--hhhccc
Confidence 6666542 11 234455566666666665542 2 2222 5566666666665543 456666
Q ss_pred CCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEeccccccccc
Q 041558 182 TSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKG 245 (495)
Q Consensus 182 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 245 (495)
++|+.|++++|.+.+..| +..+++|+.|+|++|.+++. +.+..+++|+.|+|++|.+.+.
T Consensus 153 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 153 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 667777777766666555 66666677777777766642 2466666677777776666553
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=2.8e-19 Score=182.94 Aligned_cols=170 Identities=22% Similarity=0.270 Sum_probs=118.4
Q ss_pred cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEec
Q 041558 158 PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGV 237 (495)
Q Consensus 158 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 237 (495)
+.|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+.+ +| .+..+++|+.|+|
T Consensus 43 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 6777777777777643 2 46777777777777777776554 6777777777777777764 33 5677777777777
Q ss_pred ccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCC
Q 041558 238 LMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNL 317 (495)
Q Consensus 238 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 317 (495)
++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+++.
T Consensus 117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 117 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp TTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred cCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 77777662 3466777777777777777643 456677777777777777775444 66777777777777777764
Q ss_pred chhhhhcCCCCCEEeCcCCcCCcc
Q 041558 318 IPESLENLLKLHYLGLCKNKLVQE 341 (495)
Q Consensus 318 ~~~~~~~l~~L~~L~l~~n~l~~~ 341 (495)
+.+..+++|+.|+|++|++.+.
T Consensus 191 --~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 191 --RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --GGGTTCTTCSEEECCSEEEECC
T ss_pred --hHHccCCCCCEEEccCCcCcCC
Confidence 3467777777777777777553
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=1.9e-21 Score=197.84 Aligned_cols=217 Identities=14% Similarity=0.060 Sum_probs=129.2
Q ss_pred cCCCCCCeeeccCCcccccCChhhhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEE-ccccc
Q 041558 68 GKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELA-LLYNC 146 (495)
Q Consensus 68 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~-l~~n~ 146 (495)
..+++|+.|+|++|.++ .+|..++++++|+.|++++|.....+|..+..+ ......|..++.+++|+.|+ ++.|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~---~~~~~~~~~l~~l~~L~~L~~l~~n~ 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRAL---DPLLYEKETLQYFSTLKAVDPMRAAY 421 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---CTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhc---ccccCCHHHHHHHHhcccCcchhhcc
Confidence 56788888999998886 478888889999998886664211112111000 00001222223333333333 22222
Q ss_pred cccCCCccCcccccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCC
Q 041558 147 LSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNR 226 (495)
Q Consensus 147 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 226 (495)
+ ..|+.+.+++|.++ ...+ ..|+.|++++|.+++ +|. +
T Consensus 422 ~----------~~L~~l~l~~n~i~------------------------~l~~------~~L~~L~Ls~n~l~~-lp~-~ 459 (567)
T 1dce_A 422 L----------DDLRSKFLLENSVL------------------------KMEY------ADVRVLHLAHKDLTV-LCH-L 459 (567)
T ss_dssp H----------HHHHHHHHHHHHHH------------------------HHHH------TTCSEEECTTSCCSS-CCC-G
T ss_pred c----------chhhhhhhhccccc------------------------ccCc------cCceEEEecCCCCCC-CcC-c
Confidence 1 12333334444333 2211 135566666666663 454 6
Q ss_pred CCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccC-CcccCCCCCCC
Q 041558 227 EKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCL-PTEIGSPIELE 305 (495)
Q Consensus 227 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 305 (495)
+.+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++ +| .++.+++|+.|+|++|.+++.. |..+..+++|+
T Consensus 460 ~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 460 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred cccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCC
Confidence 66666666666666666 456667777777777777777764 55 6777777777777777777665 77777778888
Q ss_pred EEeCCCCcCCCCchh---hhhcCCCCCEEeC
Q 041558 306 YLDFSVNRFNNLIPE---SLENLLKLHYLGL 333 (495)
Q Consensus 306 ~L~Ls~n~l~~~~~~---~~~~l~~L~~L~l 333 (495)
.|+|++|.+++.+|. .+..+++|+.|++
T Consensus 537 ~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 537 LLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888888877776442 2345778888764
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=1.1e-18 Score=153.25 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=92.7
Q ss_pred CCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceee
Q 041558 205 YPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLI 284 (495)
Q Consensus 205 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ 284 (495)
+++|+.|++++|.++ .+| .+..+++|+.|++++|.+.. +..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344555555555554 333 34555555555555554432 23455566666666666666655566666677777777
Q ss_pred cccccccccCCcccCCCCCCCEEeCCCCc-CCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCC
Q 041558 285 LRRNQLVGCLPTEIGSPIELEYLDFSVNR-FNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLG 363 (495)
Q Consensus 285 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~ 363 (495)
+++|.+++..+..+..+++|++|++++|. ++.. + .+..+++|+.|++++|++++. + .+..+++|+.|++++|+++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 77777766566667777777777777776 5443 3 567777777777777777553 2 5667777777777777763
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=6.3e-19 Score=167.96 Aligned_cols=256 Identities=13% Similarity=0.058 Sum_probs=133.3
Q ss_pred CccCCeeecccCccc--ccCCcccccCcccceeecccccccccCCccccC--------CCCCCeeeccCCcccccCChhh
Q 041558 22 SQFLWGLDLSNNQFS--SSIPLSFGNLSNLIFLYLYENSYFASIPSNVGK--------LKSLGDLQLNGNQFISYIPSSF 91 (495)
Q Consensus 22 l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~ 91 (495)
+++|++|||++|++. ...+..+ +.++.+.+..|. ..+.+|.+ +++|+.|++.+ .++.+.+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCccccc---cccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 455666666666655 2222111 223333333332 23355666 88888888888 7777777788
Q ss_pred hcCCCCCEEecCCCcccccCCccccCCCCCCEEeee------------cccccCCCCCC-EEEccccccccCCCccCccc
Q 041558 92 GNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVL------------PLSVSNLTNPK-ELALLYNCLSGSIPPSLENP 158 (495)
Q Consensus 92 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~------------~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~~ 158 (495)
.++++|+.+++++|.+....+..|..+.++..+..- ...+.++..|+ .+.+....
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~------------ 188 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG------------ 188 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC------------
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC------------
Confidence 888888888888888765555556554444333220 01111222222 11111100
Q ss_pred ccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecc
Q 041558 159 MLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVL 238 (495)
Q Consensus 159 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 238 (495)
.+...+...-....+++.+.+.++-...........+++|+.+++++|+++...+.+|.+|++|+.+++.
T Consensus 189 ----------~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 189 ----------KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp ----------CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ----------cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 0000000011122333444443321111111111124566666666666665555556666666666666
Q ss_pred cccccccCCccccCCCCCc-eeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEe
Q 041558 239 MNTITKGIPREIRNSSQRQ-ALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLD 308 (495)
Q Consensus 239 ~n~l~~~~~~~~~~l~~L~-~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 308 (495)
+| +....+.+|.++.+|+ .+++.+ .++...+.+|.+|++|+.+++++|.++...+..|.++++|+.++
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 65 5554455666666666 666666 45544556677777777777777777655556677777777665
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=5.4e-21 Score=194.43 Aligned_cols=122 Identities=24% Similarity=0.233 Sum_probs=89.4
Q ss_pred CCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCC
Q 041558 231 KLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFS 310 (495)
Q Consensus 231 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 310 (495)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 47778888887776 554 777777888888888777 667777777788888888887774 55 67777788888888
Q ss_pred CCcCCCCc-hhhhhcCCCCCEEeCcCCcCCccch---hHhhcCCCCCeEec
Q 041558 311 VNRFNNLI-PESLENLLKLHYLGLCKNKLVQELP---KILEKLVQFSELDL 357 (495)
Q Consensus 311 ~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~l~l 357 (495)
+|.+++.. |..++.+++|+.|+|++|++++.+| ..+..+++|+.||+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88777776 7777777888888888887766544 23444677777653
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=1.7e-18 Score=152.12 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=114.8
Q ss_pred CCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCce
Q 041558 179 RSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQA 258 (495)
Q Consensus 179 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 258 (495)
..+++|+.|++++|.+.. ++ .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 456677777777777763 33 4677778888888887654 2345777788888888888887777777888888888
Q ss_pred eccCCCeeeeecCCCCccccccceeeccccc-ccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCc
Q 041558 259 LDLSLNHIIGEIPKELGKLNSLIKLILRRNQ-LVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNK 337 (495)
Q Consensus 259 L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 337 (495)
|++++|.+++..+..+..+++|+.|++++|. ++ .+| .+..+++|++|++++|.+++.. .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcc
Confidence 8888888876666777788888888888887 54 455 5778888888888888888753 67888889999998888
Q ss_pred CC
Q 041558 338 LV 339 (495)
Q Consensus 338 l~ 339 (495)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 74
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=1.7e-18 Score=151.16 Aligned_cols=132 Identities=20% Similarity=0.205 Sum_probs=98.9
Q ss_pred cEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCc-cccCCCCCceeccCCCeeeeecCCCCccccccceeeccc
Q 041558 209 TFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPR-EIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRR 287 (495)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~ 287 (495)
+.+++++|.++ .+|..+.. +++.|++++|.+.+..+. .|..+++|++|++++|.+++..|..|..+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888888886 56665543 788888888888775554 367778888888888888777777777777888888888
Q ss_pred ccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccch
Q 041558 288 NQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELP 343 (495)
Q Consensus 288 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 343 (495)
|++++..+..|..+++|++|+|++|.+++..|..+..+++|+.|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88877777677777777777777777777777777777777777777777765543
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.75 E-value=5.9e-18 Score=147.78 Aligned_cols=127 Identities=26% Similarity=0.369 Sum_probs=64.8
Q ss_pred CEEecccccccccCCccccCCCCCceeccCCCeeeeecCC-CCccccccceeecccccccccCCcccCCCCCCCEEeCCC
Q 041558 233 GTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPK-ELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSV 311 (495)
Q Consensus 233 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 311 (495)
+.+++++|.+.. +|..+.. ++++|++++|.+.+..+. .|..+++|+.|+|++|.+++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 445555555533 3333321 455555555555433332 245555555555555555544455555555555555555
Q ss_pred CcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCC
Q 041558 312 NRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL 362 (495)
Q Consensus 312 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l 362 (495)
|.+++..+..|..+++|+.|++++|++++..|..+..+++|+.|++++|++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 555555444455555555555555555555555555555555555555555
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=7.2e-19 Score=161.62 Aligned_cols=166 Identities=19% Similarity=0.208 Sum_probs=87.1
Q ss_pred cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEec
Q 041558 158 PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGV 237 (495)
Q Consensus 158 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 237 (495)
.++..++++.+.+++.. .+..+++|+.|++++|.++... .++.+++|++|++++|.+++..+ +..+++|+.|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 45666677777666433 3556666666666666665432 45556666666666666653322 555555666666
Q ss_pred ccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCC
Q 041558 238 LMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNL 317 (495)
Q Consensus 238 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 317 (495)
++|.+++ +|.. .. ++|++| ++++|.+++ ++ .+..+++|++|++++|.+++.
T Consensus 93 ~~N~l~~-l~~~-~~-~~L~~L------------------------~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~ 143 (263)
T 1xeu_A 93 NRNRLKN-LNGI-PS-ACLSRL------------------------FLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI 143 (263)
T ss_dssp CSSCCSC-CTTC-CC-SSCCEE------------------------ECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC
T ss_pred CCCccCC-cCcc-cc-CcccEE------------------------EccCCccCC-Ch-hhcCcccccEEECCCCcCCCC
Confidence 6555554 2211 11 444444 444444442 22 244455555555555555443
Q ss_pred chhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCC
Q 041558 318 IPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFL 362 (495)
Q Consensus 318 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l 362 (495)
+.+..+++|+.|++++|++++. ..+..+++|+.|++++|++
T Consensus 144 --~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 144 --VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp --GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred --hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 1344555555555555555443 3344455555555555555
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=2e-18 Score=158.64 Aligned_cols=169 Identities=16% Similarity=0.166 Sum_probs=131.3
Q ss_pred CCCCCEEEccccccccCCCccCcc-cccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEE
Q 041558 134 LTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFID 212 (495)
Q Consensus 134 ~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 212 (495)
+.++..++++.+.+++.. .+.. ++|+.|++++|.++. ++ .+..+++|+.|++++|.+++..+ ++.+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 445666778888776443 3334 899999999999974 44 68899999999999999998766 89999999999
Q ss_pred ccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccc
Q 041558 213 LSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVG 292 (495)
Q Consensus 213 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 292 (495)
+++|++++ +|.... ++|+.|++++|.+++. ..+..+++|+.|++++|.+++. + .+..+++|+.|++++|.+++
T Consensus 92 L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKN-LNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSC-CTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCC-cCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 99999985 444333 8999999999999883 3577888888888888888743 3 56677777777777777775
Q ss_pred cCCcccCCCCCCCEEeCCCCcCCCC
Q 041558 293 CLPTEIGSPIELEYLDFSVNRFNNL 317 (495)
Q Consensus 293 ~~~~~~~~l~~L~~L~Ls~n~l~~~ 317 (495)
. ..+..+++|+.|++++|.++..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 4 4566677777777777766654
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=1.2e-17 Score=159.00 Aligned_cols=262 Identities=13% Similarity=-0.014 Sum_probs=172.2
Q ss_pred CcEEEeeCCccc--ccCCccCcCCccCCeeecccCcccccCCccccc--------CcccceeecccccccccCCccccCC
Q 041558 1 MALLIIHNNSLS--GFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGN--------LSNLIFLYLYENSYFASIPSNVGKL 70 (495)
Q Consensus 1 L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~L~~n~~~~~~~~~~~~l 70 (495)
|++|||++|++. ...+.. ++.++.+.+..|. +.+.+|.+ |++|+.++|.+ .+....+.+|.+|
T Consensus 51 L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~ 123 (329)
T 3sb4_A 51 LKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC 123 (329)
T ss_dssp CCEEEEEEEEECCEEESSSS---SGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred CeEEecCcceeEEecCcccc---ccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence 689999999998 333222 3335666666663 33456777 99999999998 7888888899999
Q ss_pred CCCCeeeccCCcccccCChhhhcCCCCCEEecCCCcc----cccCCccccCCCCCCE-EeeecccccCCCCCCEEEcccc
Q 041558 71 KSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKL----FVSIPNEIGKMRSLNI-LEVLPLSVSNLTNPKELALLYN 145 (495)
Q Consensus 71 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~----~~~~~~~~~~l~~L~~-L~l~~~~l~~~~~L~~L~l~~n 145 (495)
++|++|++++|.+..+.+.+|.++.++..+....+.. .......|.++..|+. +.+ + ....+...-...
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~-~----~~~~l~~~~~~~- 197 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQV-G----AMGKLEDEIMKA- 197 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEE-C----TTCCHHHHHHHT-
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEe-c----CCCcHHHHHhhc-
Confidence 9999999999999888888999988888887766432 1122345666666662 222 1 111110000000
Q ss_pred ccccCCCccCcccccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCC
Q 041558 146 CLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSN 225 (495)
Q Consensus 146 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 225 (495)
.+...+++.+.+.++-...........+++|+.+++++|+++.+...+|..+++|+.+++++| ++...+.+
T Consensus 198 --------~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~a 268 (329)
T 3sb4_A 198 --------GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRV 268 (329)
T ss_dssp --------TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred --------ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHH
Confidence 000122222333222111011011123677888888888888777788888888888888877 66666777
Q ss_pred CCCCCCCC-EEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeec
Q 041558 226 REKCPKLG-TLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLIL 285 (495)
Q Consensus 226 ~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L 285 (495)
|.+|++|+ .+++.+ .++...+.+|.++++|+.++++.|.+....+.+|.++++|+.++.
T Consensus 269 F~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 269 FSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 88888888 888877 666666677888888888888888887666667888888887753
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=2.2e-18 Score=180.78 Aligned_cols=178 Identities=24% Similarity=0.204 Sum_probs=87.6
Q ss_pred CccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCC
Q 041558 16 PLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLT 95 (495)
Q Consensus 16 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 95 (495)
|+.|..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|.+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 445555666666666666665 44444555666666666666655 55555666666666666666655 3455566666
Q ss_pred CCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc--cccccccccccccccc
Q 041558 96 NLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN--PMLARLGLDFNHFKRT 173 (495)
Q Consensus 96 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~--~~L~~L~l~~n~~~~~ 173 (495)
+|++|+|++|.++ .+| ..++.+++|+.|++++|.+++.+|..+.. .....+++++|.+++.
T Consensus 294 ~L~~L~L~~N~l~-~lp----------------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLP----------------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp TCSEEECCSSCCC-CCC----------------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCEEECCCCCCC-ccC----------------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence 6666666666553 333 34556677788888888888877777655 3334577888888877
Q ss_pred cCccCCCCCCCCEEEccCc--------eeeeccCccccCCCCccEEEccCCcCc
Q 041558 174 IPKSLRSCTSLIRLCRNRN--------NLTRDISEALGIYPYLTFIDLSRNNFH 219 (495)
Q Consensus 174 ~~~~~~~l~~L~~L~l~~n--------~~~~~~~~~~~~~~~L~~L~l~~n~l~ 219 (495)
+|.. |..|+++.| .+.+..+..+..+..+....++.|.+.
T Consensus 357 ~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 357 LPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCCC-----------------------------------------------CCC
T ss_pred Cccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 7654 344555555 222333333344444455555555543
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=2.9e-17 Score=140.23 Aligned_cols=137 Identities=23% Similarity=0.162 Sum_probs=97.5
Q ss_pred CCCCEEeccccccc-ccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEe
Q 041558 230 PKLGTLGVLMNTIT-KGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLD 308 (495)
Q Consensus 230 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 308 (495)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555666666555 44555556666666677776666643 5667777788888888888766777666678888888
Q ss_pred CCCCcCCCCch-hhhhcCCCCCEEeCcCCcCCccch---hHhhcCCCCCeEeccCCCCCCCCCc
Q 041558 309 FSVNRFNNLIP-ESLENLLKLHYLGLCKNKLVQELP---KILEKLVQFSELDLSYNFLGPIPNS 368 (495)
Q Consensus 309 Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~l~ls~n~l~~~p~~ 368 (495)
+++|.+++... ..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+..+|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 88888877532 677788888888888888876655 4777888888888888888666643
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=9e-19 Score=183.66 Aligned_cols=141 Identities=21% Similarity=0.192 Sum_probs=67.8
Q ss_pred CccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCC
Q 041558 175 PKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSS 254 (495)
Q Consensus 175 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 254 (495)
+..+..++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|+.|+|++|.++ .+|..|..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 444555555555555555554 23333334555555555555555 44555555555555555555555 3455555555
Q ss_pred CCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCC-CCEEeCCCCcCCCCch
Q 041558 255 QRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIE-LEYLDFSVNRFNNLIP 319 (495)
Q Consensus 255 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~ 319 (495)
+|++|+|++|.++ .+|..|+.+++|+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 5555555555554 44445555555555555555555544444432211 1124455555554444
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=144.58 Aligned_cols=115 Identities=23% Similarity=0.212 Sum_probs=66.1
Q ss_pred CCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCc
Q 041558 255 QRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLC 334 (495)
Q Consensus 255 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 334 (495)
++++|++++|.++ .+|..|..+++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|+
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3444555555444 344445555555555555555554444555556666666666666666555556666666666666
Q ss_pred CCcCCccchhHhhcCCCCCeEeccCCCCCCCCCccc
Q 041558 335 KNKLVQELPKILEKLVQFSELDLSYNFLGPIPNSIA 370 (495)
Q Consensus 335 ~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~~~~ 370 (495)
+|++++..+..+..+++|+.|++++|++.|.+...+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHH
Confidence 666655555556666666667777777644444333
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=3.8e-17 Score=136.52 Aligned_cols=122 Identities=20% Similarity=0.151 Sum_probs=75.1
Q ss_pred CcEEEeeCCccc-ccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeecc
Q 041558 1 MALLIIHNNSLS-GFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLN 79 (495)
Q Consensus 1 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 79 (495)
|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+.+.+|..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 456666666666 56666666666666666666666644 456666666666666666666566655566666666666
Q ss_pred CCccccc-CChhhhcCCCCCEEecCCCcccccCC---ccccCCCCCCEE
Q 041558 80 GNQFISY-IPSSFGNLTNLSTSRLSKNKLFVSIP---NEIGKMRSLNIL 124 (495)
Q Consensus 80 ~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L 124 (495)
+|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEE
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccc
Confidence 6666652 23556666666666666666654333 244444444444
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=1.7e-15 Score=147.31 Aligned_cols=264 Identities=13% Similarity=0.066 Sum_probs=167.9
Q ss_pred CccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEe
Q 041558 22 SQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSR 101 (495)
Q Consensus 22 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 101 (495)
+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+..+.+.+|.++++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 45666776654 3554666677775 6888887665 566666677774 688888875 56666667788888888888
Q ss_pred cCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-cccccccccccccccccCccCCC
Q 041558 102 LSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIPKSLRS 180 (495)
Q Consensus 102 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~ 180 (495)
+++|+++..-...|. +.+|+. +.+..+ +.......|.. ++|+.+.+..+ ++.....+|.+
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~----------------l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~ 247 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEE----------------VLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE 247 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSE----------------EECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT
T ss_pred cCCCcceEechhhEe-ecccCE----------------EEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc
Confidence 887777533333332 334443 333322 22222333333 45555555543 33334445555
Q ss_pred CCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCc-----ccCCCCCCCCCCCCEEecccccccccCCccccCCCC
Q 041558 181 CTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFH-----GEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQ 255 (495)
Q Consensus 181 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 255 (495)
.+|+.+.+ .+.+......+|..+++|+.+++.+|.+. ...+..|..|++|+.+.+.+ .+......+|.++.+
T Consensus 248 -~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~ 324 (401)
T 4fdw_A 248 -SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRK 324 (401)
T ss_dssp -CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCS
T ss_pred -CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCC
Confidence 56777777 34455566677777777777777766554 34566777788888888873 466655667778888
Q ss_pred CceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCC-CCCEEeCCCCcC
Q 041558 256 RQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPI-ELEYLDFSVNRF 314 (495)
Q Consensus 256 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l 314 (495)
|+.+++..+ ++..-..+|.++ +|+.+++.+|.+....+..|..++ +++.|.+..+.+
T Consensus 325 L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 325 VTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred ccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 888888655 554556678888 888888888877755566676664 677888776654
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.69 E-value=2.4e-15 Score=146.25 Aligned_cols=201 Identities=11% Similarity=0.050 Sum_probs=121.4
Q ss_pred cccCCCCCCEEEccccccccCCCccCcccccccccccccccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCcc
Q 041558 130 SVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLT 209 (495)
Q Consensus 130 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 209 (495)
.|.+|++|+.+++..|.++......+...+|+.+.+..+ ++.....+|.+|++|+.+++..+ +......+|.. .+|+
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGIT 251 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCS
T ss_pred HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCcc
Confidence 466677777777777777655555555577777777643 55555667777777777777754 55555666666 6677
Q ss_pred EEEccCCcCcccCCCCCCCCCCCCEEeccccccc-----ccCCccccCCCCCceeccCCCeeeeecCCCCccccccceee
Q 041558 210 FIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTIT-----KGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLI 284 (495)
Q Consensus 210 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~ 284 (495)
.+.+. +.++..-+.+|..|++|+.+.+.+|.+. ...+..|.++++|+.+++.+ .+...-..+|.+|.+|+.+.
T Consensus 252 ~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 252 TVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp EEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEE
T ss_pred EEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEE
Confidence 77774 3455455666777777777777766554 23344566666666666663 34434445566666666666
Q ss_pred cccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCC-CCCEEeCcCCc
Q 041558 285 LRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLL-KLHYLGLCKNK 337 (495)
Q Consensus 285 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~ 337 (495)
+..+ ++..-..+|.++ +|+.+++++|.+....+..|.+++ +++.|.+..+.
T Consensus 330 lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 330 IPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp ECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred ECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 6443 443444556665 666666666655554444555543 44555554443
No 130
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.68 E-value=3.3e-15 Score=145.92 Aligned_cols=310 Identities=11% Similarity=-0.025 Sum_probs=172.7
Q ss_pred ccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCCEEecCCCcccccCCcc
Q 041558 35 FSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLSTSRLSKNKLFVSIPNE 114 (495)
Q Consensus 35 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 114 (495)
++.+...+|.+|.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ +.......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 34445556666666776666433 45555556666667777766543 44444556666666666655543 22223333
Q ss_pred ccCCCCCCEEee------ecccccCCCCCCEEEccccccccCCCccCcc-cccccccccccccccccCccCCCCCCCCEE
Q 041558 115 IGKMRSLNILEV------LPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIPKSLRSCTSLIRL 187 (495)
Q Consensus 115 ~~~l~~L~~L~l------~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 187 (495)
|.++..++.... -...|.+|++|+.+.+..+. .......+.. .+|+.+.+..+ ++.....+|.++..|+.+
T Consensus 136 F~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 136 FKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred eecccccccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 444332221111 22456667777777775442 2222334443 67777777655 333445567777777777
Q ss_pred EccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeee
Q 041558 188 CRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHII 267 (495)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 267 (495)
.+..+... +.+.+....+|+.+.+... ++..-...+..+..++.+.+..+.. ......|..+..++.+....+.+
T Consensus 214 ~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i- 288 (394)
T 4fs7_A 214 EFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV- 288 (394)
T ss_dssp CCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE-
T ss_pred ecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee-
Confidence 76655332 1222333456666666543 2324455666677777777665533 22344566666666666655432
Q ss_pred eecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhh
Q 041558 268 GEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILE 347 (495)
Q Consensus 268 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 347 (495)
....|..+.+|+.+.+..+ ++..-..+|.++.+|+.++|..+ ++.+...+|.++++|+.+++..+ ++..-...|.
T Consensus 289 --~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 289 --PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp --CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT
T ss_pred --ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh
Confidence 2235666667777766544 44344456666777777777543 55445566777777777777655 5444455666
Q ss_pred cCCCCCeEeccC
Q 041558 348 KLVQFSELDLSY 359 (495)
Q Consensus 348 ~l~~L~~l~ls~ 359 (495)
.+++|+.+++..
T Consensus 364 ~C~~L~~i~lp~ 375 (394)
T 4fs7_A 364 GCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEEEEEG
T ss_pred CCCCCCEEEECC
Confidence 677777776643
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=8.2e-17 Score=134.47 Aligned_cols=127 Identities=22% Similarity=0.164 Sum_probs=80.2
Q ss_pred CCCEEeccccccc-ccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeC
Q 041558 231 KLGTLGVLMNTIT-KGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDF 309 (495)
Q Consensus 231 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 309 (495)
+++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 4444444444444 33444445555555555555555533 45566667777777777776556666666777777777
Q ss_pred CCCcCCCC-chhhhhcCCCCCEEeCcCCcCCccch---hHhhcCCCCCeEeccC
Q 041558 310 SVNRFNNL-IPESLENLLKLHYLGLCKNKLVQELP---KILEKLVQFSELDLSY 359 (495)
Q Consensus 310 s~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~l~ls~ 359 (495)
++|.+++. .+..+..+++|+.|++++|++++..+ ..+..+++|+.||+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 77777764 33667777777777777777766555 4677777777777653
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=7.2e-17 Score=137.78 Aligned_cols=131 Identities=21% Similarity=0.168 Sum_probs=66.4
Q ss_pred CccEEEccCCcCc-ccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeec
Q 041558 207 YLTFIDLSRNNFH-GEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLIL 285 (495)
Q Consensus 207 ~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L 285 (495)
+|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|+.|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3444444444443 33344344444444444444444432 33444444555555555544334444444555555555
Q ss_pred ccccccccC-CcccCCCCCCCEEeCCCCcCCCCch---hhhhcCCCCCEEeCcCCcCC
Q 041558 286 RRNQLVGCL-PTEIGSPIELEYLDFSVNRFNNLIP---ESLENLLKLHYLGLCKNKLV 339 (495)
Q Consensus 286 ~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~ 339 (495)
++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 555555321 1455566666666666666665544 35666666666666666653
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=8.8e-16 Score=133.90 Aligned_cols=128 Identities=23% Similarity=0.273 Sum_probs=108.2
Q ss_pred cEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccc
Q 041558 209 TFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRN 288 (495)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 288 (495)
+.+++++|.++ .+|..+. ++++.|++++|.++. +|..|..+++|+.|++++|.+++..+..|..+++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46777788777 5665443 578888888888874 6778888899999999999998777778899999999999999
Q ss_pred cccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCc
Q 041558 289 QLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQ 340 (495)
Q Consensus 289 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 340 (495)
.+++..+..|..+++|++|+|++|.++...+..|..+++|+.|++++|++..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9998778889999999999999999998877789999999999999999865
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=1.2e-15 Score=131.42 Aligned_cols=130 Identities=19% Similarity=0.152 Sum_probs=63.8
Q ss_pred cEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccc
Q 041558 209 TFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRN 288 (495)
Q Consensus 209 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n 288 (495)
+.++++++.++ .+|..+ .++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 44555555554 233222 134555555555555433344445555555555555554333333455555555555555
Q ss_pred cccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCCcc
Q 041558 289 QLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLVQE 341 (495)
Q Consensus 289 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 341 (495)
.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 55544444444555555555555555544444444555555555555555443
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=1.9e-15 Score=130.07 Aligned_cols=133 Identities=22% Similarity=0.211 Sum_probs=116.6
Q ss_pred CCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCC
Q 041558 231 KLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFS 310 (495)
Q Consensus 231 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 310 (495)
..+.++++++.+.. +|..+ .++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|++|+++
T Consensus 8 ~~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 8 SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp ETTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 35789999999877 45443 3689999999999997666678999999999999999997777778999999999999
Q ss_pred CCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCC
Q 041558 311 VNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIP 366 (495)
Q Consensus 311 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p 366 (495)
+|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+.+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 99999988888999999999999999998877777888999999999999995444
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=5.5e-14 Score=137.23 Aligned_cols=322 Identities=12% Similarity=0.027 Sum_probs=235.9
Q ss_pred CccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCC
Q 041558 16 PLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLT 95 (495)
Q Consensus 16 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 95 (495)
..+|.++.+|+.+.+.. .++.+...+|.+|++|+.+++..+ ++.....+|.++.+|+.+.+..+ +......+|.++.
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 35688899999999975 477677788999999999999755 56666778999999999888754 4555566777775
Q ss_pred CCCEEecCCCcccccCCccccCCCCCCEEee-------ecccccCCCCCCEEEccccccccCCCccCcc-cccccccccc
Q 041558 96 NLSTSRLSKNKLFVSIPNEIGKMRSLNILEV-------LPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDF 167 (495)
Q Consensus 96 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l-------~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~ 167 (495)
.++....... .......|.++++|+.+.+ -...|.++.+|+.+.+..+ +.......+.. ..|+.+.+..
T Consensus 141 ~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 141 FKEITIPEGV--TVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp CSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred ccccccCccc--cccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 4443333322 2334557888888888876 2345778899999988766 33333444544 7788888776
Q ss_pred cccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCC
Q 041558 168 NHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIP 247 (495)
Q Consensus 168 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 247 (495)
+.. .+...+..+..|+.+.+... +......+|..+..++.+.+..+... .....|..+..++.+....+.+. .
T Consensus 218 ~~~--~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~ 290 (394)
T 4fs7_A 218 SLY--YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---E 290 (394)
T ss_dssp TCC--EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---T
T ss_pred Cce--EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---c
Confidence 543 23445556778999888644 44556678888999999999877554 66778889999999988776543 3
Q ss_pred ccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCC
Q 041558 248 REIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLK 327 (495)
Q Consensus 248 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 327 (495)
..|..+.+|+.+.+..+ +...-..+|.++.+|+.+++..+ ++..-..+|.++.+|+.+++..+ ++.+...+|.++++
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 56788999999999765 55455668999999999999754 66455678999999999999877 77666789999999
Q ss_pred CCEEeCcCCcCCccchhHhhcCCCCCeE
Q 041558 328 LHYLGLCKNKLVQELPKILEKLVQFSEL 355 (495)
Q Consensus 328 L~~L~l~~n~l~~~~~~~~~~l~~L~~l 355 (495)
|+.+++..+ + ..+...|.++++|+.+
T Consensus 368 L~~i~lp~~-~-~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 368 LKKVELPKR-L-EQYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEEEEEGG-G-GGGGGGBCTTCEEEEE
T ss_pred CCEEEECCC-C-EEhhheecCCCCCcEE
Confidence 999999765 2 2334556666666543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=2.9e-15 Score=128.79 Aligned_cols=108 Identities=21% Similarity=0.080 Sum_probs=41.8
Q ss_pred CCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCcccccccee
Q 041558 204 IYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKL 283 (495)
Q Consensus 204 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L 283 (495)
.+++|+.|++++|.++. +|......++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 34444455555554442 222111112444444444444332 233334444444444444432221222334444444
Q ss_pred ecccccccccCCc--ccCCCCCCCEEeCCCCcCC
Q 041558 284 ILRRNQLVGCLPT--EIGSPIELEYLDFSVNRFN 315 (495)
Q Consensus 284 ~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~ 315 (495)
++++|.++ .+|. .+..+++|++|++++|.++
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 44444443 2222 3334444444444444443
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=4.9e-15 Score=127.30 Aligned_cols=134 Identities=21% Similarity=0.152 Sum_probs=111.9
Q ss_pred CCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCC
Q 041558 225 NREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIEL 304 (495)
Q Consensus 225 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 304 (495)
.+..+++|+.|++++|.+.. ++......++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 35567899999999999986 454333344999999999999865 678999999999999999996655666889999
Q ss_pred CEEeCCCCcCCCCch-hhhhcCCCCCEEeCcCCcCCccchh----HhhcCCCCCeEeccCCCC
Q 041558 305 EYLDFSVNRFNNLIP-ESLENLLKLHYLGLCKNKLVQELPK----ILEKLVQFSELDLSYNFL 362 (495)
Q Consensus 305 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~l~ls~n~l 362 (495)
++|++++|.++...+ ..+..+++|+.|++++|+++. +|. .+..+++|+.||+++|..
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCH
Confidence 999999999976432 378899999999999999964 454 488999999999999887
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=1e-14 Score=124.40 Aligned_cols=106 Identities=28% Similarity=0.248 Sum_probs=89.5
Q ss_pred cEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCC
Q 041558 2 ALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGN 81 (495)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 81 (495)
+++++++|.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++.+..+..|.++++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 57888889888 5776664 78899999999998888888889999999999999988777777888999999999999
Q ss_pred cccccCChhhhcCCCCCEEecCCCccccc
Q 041558 82 QFISYIPSSFGNLTNLSTSRLSKNKLFVS 110 (495)
Q Consensus 82 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 110 (495)
++++..+..|..+++|++|+|++|.+...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 98887677788899999999999988644
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=1.7e-17 Score=145.75 Aligned_cols=149 Identities=24% Similarity=0.281 Sum_probs=93.3
Q ss_pred CccEEEccCCcCcccCCC------CCCCCCCCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCcccccc
Q 041558 207 YLTFIDLSRNNFHGEIPS------NREKCPKLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSL 280 (495)
Q Consensus 207 ~L~~L~l~~n~l~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L 280 (495)
.++.++++.+.+.+.+|. .+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 334444444444444333 45556666666666666655 44 5666666777777777666 455555566777
Q ss_pred ceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCch-hhhhcCCCCCEEeCcCCcCCccchh----------HhhcC
Q 041558 281 IKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIP-ESLENLLKLHYLGLCKNKLVQELPK----------ILEKL 349 (495)
Q Consensus 281 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~----------~~~~l 349 (495)
+.|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++.+.+|. .+..+
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 777777777764 34 46666777777777777776433 4667777777777777777665543 36677
Q ss_pred CCCCeEeccCCCC
Q 041558 350 VQFSELDLSYNFL 362 (495)
Q Consensus 350 ~~L~~l~ls~n~l 362 (495)
++|+.|| +|++
T Consensus 174 ~~L~~Ld--~~~i 184 (198)
T 1ds9_A 174 PNLKKLD--GMPV 184 (198)
T ss_dssp SSCSEEC--CGGG
T ss_pred CCcEEEC--Cccc
Confidence 7888776 4444
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.55 E-value=2.1e-14 Score=122.80 Aligned_cols=104 Identities=32% Similarity=0.306 Sum_probs=79.9
Q ss_pred cEEEeeCCcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCC
Q 041558 2 ALLIIHNNSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGN 81 (495)
Q Consensus 2 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 81 (495)
+.+++++|+++ .+|..+. ++|++|+|++|++++..|..|+++++|++|+|++|++.+..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 46777888876 5676664 67888888888888777777888888888888888877766666777888888888888
Q ss_pred cccccCChhhhcCCCCCEEecCCCccc
Q 041558 82 QFISYIPSSFGNLTNLSTSRLSKNKLF 108 (495)
Q Consensus 82 ~l~~~~~~~~~~l~~L~~L~l~~n~~~ 108 (495)
++++..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 887765556778888888888888775
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=3.7e-17 Score=143.60 Aligned_cols=152 Identities=22% Similarity=0.179 Sum_probs=108.4
Q ss_pred CCCCEEEccCceeeeccCc------cccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCccccCCCC
Q 041558 182 TSLIRLCRNRNNLTRDISE------ALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIRNSSQ 255 (495)
Q Consensus 182 ~~L~~L~l~~n~~~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 255 (495)
..++.++++.+.+++..|. .++.+++|++|++++|.+++ +| .+..+++|+.|++++|.+.. +|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCc
Confidence 3444444444444444443 66667777777777777764 55 66777778888888887774 6666666778
Q ss_pred CceeccCCCeeeeecCCCCccccccceeecccccccccCC-cccCCCCCCCEEeCCCCcCCCCchh----------hhhc
Q 041558 256 RQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLP-TEIGSPIELEYLDFSVNRFNNLIPE----------SLEN 324 (495)
Q Consensus 256 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~----------~~~~ 324 (495)
|++|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+++..|. .+..
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 8888888888874 44 57788889999999998884322 4678889999999999988776554 3788
Q ss_pred CCCCCEEeCcCCcCCc
Q 041558 325 LLKLHYLGLCKNKLVQ 340 (495)
Q Consensus 325 l~~L~~L~l~~n~l~~ 340 (495)
+++|+.|| +|.++.
T Consensus 173 l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 173 LPNLKKLD--GMPVDV 186 (198)
T ss_dssp CSSCSEEC--CGGGTT
T ss_pred CCCcEEEC--CcccCH
Confidence 99999987 666643
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=4e-14 Score=120.65 Aligned_cols=107 Identities=21% Similarity=0.206 Sum_probs=68.6
Q ss_pred ceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCC
Q 041558 257 QALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKN 336 (495)
Q Consensus 257 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 336 (495)
+++++++|.++ .+|..+. ++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45566666555 3444432 55666666666666555666666666777777777666666666666677777777777
Q ss_pred cCCccchhHhhcCCCCCeEeccCCCCCCCC
Q 041558 337 KLVQELPKILEKLVQFSELDLSYNFLGPIP 366 (495)
Q Consensus 337 ~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p 366 (495)
++++..+..+..+++|+.|++++|++.+.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 776655556666777777777777775444
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=7.2e-14 Score=119.47 Aligned_cols=108 Identities=18% Similarity=0.209 Sum_probs=70.2
Q ss_pred ceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCC
Q 041558 257 QALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKN 336 (495)
Q Consensus 257 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 336 (495)
+.+++++|.++ .+|..+. ++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45566666654 4554443 56666666666666656666666677777777777776665555666777777777777
Q ss_pred cCCccchhHhhcCCCCCeEeccCCCCCCCCC
Q 041558 337 KLVQELPKILEKLVQFSELDLSYNFLGPIPN 367 (495)
Q Consensus 337 ~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~ 367 (495)
++++..+..+..+++|+.|++++|++.+.|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 7765555556667777777777777755553
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.50 E-value=7.3e-12 Score=122.11 Aligned_cols=313 Identities=10% Similarity=0.041 Sum_probs=171.8
Q ss_pred cCCccCcCCc-cCCeeecccCcccccCCcccccCcccceeeccccc---ccccCCccccCCCCCCeeeccCCcccccCCh
Q 041558 14 FIPLNIGNSQ-FLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENS---YFASIPSNVGKLKSLGDLQLNGNQFISYIPS 89 (495)
Q Consensus 14 ~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~---~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 89 (495)
.-..+|.++. .|+.+.+..+ ++.+...+|.+|.+|+.+.+..|. ++.....+|.++.+|+.+.+..+ ++.+...
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 3345687774 5899988754 666777889999999999988763 55556678888999998888764 5555667
Q ss_pred hhhcCCCCCEEecCCCcccccCCccccCCCCCCEEee------ecccccCCCCCCEEEccccccccCCCccCcccccccc
Q 041558 90 SFGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEV------LPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARL 163 (495)
Q Consensus 90 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l------~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L 163 (495)
+|.++.+|+.+.+..+. .......|..+.+|+.+.+ +....-...+|+.+.+..+
T Consensus 132 aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF~~~~l~~i~ip~~------------------ 192 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDSVTAIEERAFTGTALTQIHIPAK------------------ 192 (394)
T ss_dssp TTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCCCSEEEECTT------------------
T ss_pred hhhhhccccccccccee-eeecccceecccccccccccceeeEeccccccccceeEEEECCc------------------
Confidence 88889999999987553 3334456666666766654 1111111233444443222
Q ss_pred cccccccccccCccCCCCCCCCEEEccCceeeeccCc-------------cccCCCCccEEEccCCcCcccCCCCCCCCC
Q 041558 164 GLDFNHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISE-------------ALGIYPYLTFIDLSRNNFHGEIPSNREKCP 230 (495)
Q Consensus 164 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-------------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 230 (495)
. ......+|.++..++......+........ .+.....+..+.+.+ .++..-..+|..|.
T Consensus 193 -----~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~ 265 (394)
T 4gt6_A 193 -----V-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCA 265 (394)
T ss_dssp -----C-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCS
T ss_pred -----c-cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecc
Confidence 1 112223344444444444333221110000 011122233333322 22223344566666
Q ss_pred CCCEEecccccccccCCccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCC
Q 041558 231 KLGTLGVLMNTITKGIPREIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFS 310 (495)
Q Consensus 231 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 310 (495)
.|+.+.+.++.. ......|.++..|+.+.+.. .+......+|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+.
T Consensus 266 ~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 266 YLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp SCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 666666654432 22334566666666666653 333344456667777777777643 443445567777777777775
Q ss_pred CCcCCCCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCC
Q 041558 311 VNRFNNLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNF 361 (495)
Q Consensus 311 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~ 361 (495)
.+ ++.+...+|.++++|+.+++.++... ...+.....|+.+.+..|.
T Consensus 343 ~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 343 SS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC---------
T ss_pred cc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCC
Confidence 44 55555567777777777777665431 1334455566666655443
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.48 E-value=3.5e-12 Score=124.36 Aligned_cols=300 Identities=8% Similarity=0.037 Sum_probs=196.1
Q ss_pred ccccCCcccccCc-ccceeecccccccccCCccccCCCCCCeeeccCCc---ccccCChhhhcCCCCCEEecCCCccccc
Q 041558 35 FSSSIPLSFGNLS-NLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQ---FISYIPSSFGNLTNLSTSRLSKNKLFVS 110 (495)
Q Consensus 35 l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 110 (495)
++.+...+|.+++ .|+.+.+-.+ ++.+...+|.++.+|+.+.+..|. ++.+-..+|.++.+|+.+.+..+ +...
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 3444556677774 4888887543 566666778888888888887653 44555567777778877766554 2222
Q ss_pred CCccccCCCCCCEEeeecccccCCCCCCEEEccccccccCCCccCcc-cccccccccccccccccCccCCCCCCCCEEEc
Q 041558 111 IPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSGSIPPSLEN-PMLARLGLDFNHFKRTIPKSLRSCTSLIRLCR 189 (495)
Q Consensus 111 ~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 189 (495)
....| ..+.+|+.+.+..+ ........+.. ..|+.+.+..+ ++..-..+|. ...|+.+.+
T Consensus 129 ~~~aF----------------~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~i 189 (394)
T 4gt6_A 129 DSEAF----------------HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHI 189 (394)
T ss_dssp CTTTT----------------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEE
T ss_pred hhhhh----------------hhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEE
Confidence 22333 44555555555432 12122223333 56666666544 3323334454 467899888
Q ss_pred cCceeeeccCccccCCCCccEEEccCCcCcccCCCC--------------CCCCCCCCEEecccccccccCCccccCCCC
Q 041558 190 NRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSN--------------REKCPKLGTLGVLMNTITKGIPREIRNSSQ 255 (495)
Q Consensus 190 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--------------~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 255 (495)
..+ +......+|..+.+++......+.... +... +.....+..+.+.. .+...-..+|.++..
T Consensus 190 p~~-~~~i~~~af~~c~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~ 266 (394)
T 4gt6_A 190 PAK-VTRIGTNAFSECFALSTITSDSESYPA-IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAY 266 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEECCSSSCB-SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSS
T ss_pred CCc-ccccccchhhhccccceeccccccccc-ccceeecccccccccccccccccccceEEcCC-cceEcccceeeeccc
Confidence 755 334556778888899888776654431 1111 11223344444432 233334567889999
Q ss_pred CceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcC
Q 041558 256 RQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCK 335 (495)
Q Consensus 256 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~ 335 (495)
|+.+.+..+... ....+|.+++.|+.+.+. +.++......|.++.+|+.++|..+ ++.+...+|.++.+|+.+.+..
T Consensus 267 L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 267 LASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp CCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred ccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence 999999876543 556789999999999997 4555456678999999999999875 6666678999999999999975
Q ss_pred CcCCccchhHhhcCCCCCeEeccCCCC
Q 041558 336 NKLVQELPKILEKLVQFSELDLSYNFL 362 (495)
Q Consensus 336 n~l~~~~~~~~~~l~~L~~l~ls~n~l 362 (495)
+ ++..-...|.++++|+.+++.++..
T Consensus 344 s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 344 S-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp T-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred c-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 5 6666678899999999999987643
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=1.5e-12 Score=124.90 Aligned_cols=104 Identities=19% Similarity=0.201 Sum_probs=68.9
Q ss_pred EEecccc-cccccCCccccCCCCCceeccCC-CeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCC
Q 041558 234 TLGVLMN-TITKGIPREIRNSSQRQALDLSL-NHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSV 311 (495)
Q Consensus 234 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 311 (495)
.++.+++ .+++ +|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 6655 555 66667777777774 777655556667777777777777777766666667777777777777
Q ss_pred CcCCCCchhhhhcCCCCCEEeCcCCcCCc
Q 041558 312 NRFNNLIPESLENLLKLHYLGLCKNKLVQ 340 (495)
Q Consensus 312 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 340 (495)
|.|++..+..+..++ |+.|+|.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777666555555554 6677777766653
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=1.6e-12 Score=124.67 Aligned_cols=103 Identities=19% Similarity=0.118 Sum_probs=79.0
Q ss_pred EEEeeCC-cccccCCccCcCCccCCeeeccc-CcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 3 LLIIHNN-SLSGFIPLNIGNSQFLWGLDLSN-NQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 3 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
.++.+++ +++ .+|. +..+++|++|+|++ |.+++..+..|+++++|++|+|++|++.+..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566776 777 4777 88888888888885 888877777788888888888888888887777788888888888888
Q ss_pred CcccccCChhhhcCCCCCEEecCCCccc
Q 041558 81 NQFISYIPSSFGNLTNLSTSRLSKNKLF 108 (495)
Q Consensus 81 n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 108 (495)
|++++..+..|..++ |+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 888776555666555 888888888775
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=2.4e-14 Score=137.92 Aligned_cols=166 Identities=18% Similarity=0.174 Sum_probs=81.9
Q ss_pred CCCCEEEccCceeeeccCccccC-----CCCccEEEccCCcCcccCCCCC-CCCCCCCEEecccccccccCCccc-----
Q 041558 182 TSLIRLCRNRNNLTRDISEALGI-----YPYLTFIDLSRNNFHGEIPSNR-EKCPKLGTLGVLMNTITKGIPREI----- 250 (495)
Q Consensus 182 ~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~----- 250 (495)
+.|+.|++++|.++......+.. .++|+.|++++|.+++.....+ ..+++|+.|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45666666666665433332221 2466666666666653211111 123455666666666554322222
Q ss_pred cCCCCCceeccCCCeeeee----cCCCCccccccceeeccccccccc----CCcccCCCCCCCEEeCCCCcCCCC----c
Q 041558 251 RNSSQRQALDLSLNHIIGE----IPKELGKLNSLIKLILRRNQLVGC----LPTEIGSPIELEYLDFSVNRFNNL----I 318 (495)
Q Consensus 251 ~~l~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~ 318 (495)
...+.|++|+|++|.++.. ++..+..+++|+.|+|++|.+++. ++..+...++|++|+|++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 1345566666666655421 222233445566666666655432 233344455666666666666542 2
Q ss_pred hhhhhcCCCCCEEeCcCCcCCccchhHhh
Q 041558 319 PESLENLLKLHYLGLCKNKLVQELPKILE 347 (495)
Q Consensus 319 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 347 (495)
...+...++|+.|+|++|.++..-...+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 22333445666666666666544333333
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=9.3e-14 Score=133.73 Aligned_cols=160 Identities=16% Similarity=0.136 Sum_probs=121.9
Q ss_pred CCCccEEEccCCcCcccCCCC----CC-CCCCCCEEecccccccccCCccc-cCCCCCceeccCCCeeeeecCCCC----
Q 041558 205 YPYLTFIDLSRNNFHGEIPSN----RE-KCPKLGTLGVLMNTITKGIPREI-RNSSQRQALDLSLNHIIGEIPKEL---- 274 (495)
Q Consensus 205 ~~~L~~L~l~~n~l~~~~~~~----~~-~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~---- 274 (495)
++.|+.|++++|.++...... +. ..++|+.|+|++|.++......+ ..+.+|+.|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 468999999999987543222 22 34799999999999976433333 346789999999999975433333
Q ss_pred -ccccccceeeccccccccc----CCcccCCCCCCCEEeCCCCcCCCC----chhhhhcCCCCCEEeCcCCcCCcc----
Q 041558 275 -GKLNSLIKLILRRNQLVGC----LPTEIGSPIELEYLDFSVNRFNNL----IPESLENLLKLHYLGLCKNKLVQE---- 341 (495)
Q Consensus 275 -~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~---- 341 (495)
...++|+.|+|++|.++.. ++..+...++|++|+|++|.+++. +...+...++|+.|+|++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2457899999999999752 444557789999999999999764 355677888999999999999753
Q ss_pred chhHhhcCCCCCeEeccCCCCCC
Q 041558 342 LPKILEKLVQFSELDLSYNFLGP 364 (495)
Q Consensus 342 ~~~~~~~l~~L~~l~ls~n~l~~ 364 (495)
++..+...++|+.||+++|+++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 44556677999999999999843
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.28 E-value=8.7e-10 Score=106.84 Aligned_cols=307 Identities=9% Similarity=-0.001 Sum_probs=179.2
Q ss_pred CcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChhhhcCCCCC
Q 041558 19 IGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSSFGNLTNLS 98 (495)
Q Consensus 19 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 98 (495)
+....+|+.+.+.. .++.+...+|.+|.+|+.+.|..+ ++.....+|.++ +|+.+.+..+ +..+...+|.+. +|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence 45567788888864 466566778999999999998654 566666778876 6888877654 455445566654 788
Q ss_pred EEecCCCcccccCCccccCCCCCCEEee-------ecccccCCCCCCEEEccccccccCCCccCcccccccccccccccc
Q 041558 99 TSRLSKNKLFVSIPNEIGKMRSLNILEV-------LPLSVSNLTNPKELALLYNCLSGSIPPSLENPMLARLGLDFNHFK 171 (495)
Q Consensus 99 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l-------~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~ 171 (495)
.+.+..+- .......|.++ ++....+ -...+..+.+++.+.+..+.......... ..+. .
T Consensus 117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~----------~~~~-~ 183 (379)
T 4h09_A 117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV----------LYNK-N 183 (379)
T ss_dssp EEECCTTC-CEECTTTTTTC-CCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTE----------EEET-T
T ss_pred cccCCCcc-ccccccccccc-eeeeeeccceeeccccchhcccccccccccccccceeecccce----------eccc-c
Confidence 88887653 22223334333 4444443 12334555666665554432111000000 0000 0
Q ss_pred cccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCcccc
Q 041558 172 RTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIR 251 (495)
Q Consensus 172 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 251 (495)
......+..+..+..+.+... .......++....+|+.+.+..+ +.......+..+..|+.+.+..+ ++..-...|.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~ 260 (379)
T 4h09_A 184 KTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQ 260 (379)
T ss_dssp SSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTT
T ss_pred cceeccccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccc
Confidence 111223444455555554432 22233445566667777776544 33345556677777777777654 4443445667
Q ss_pred CCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEE
Q 041558 252 NSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYL 331 (495)
Q Consensus 252 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 331 (495)
++..|+.+.+..+ +......+|..+.+|+.+.+.++.++..-..+|.++.+|+.++|..+ ++.+...+|.++++|+.+
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 7777777777544 43344456777788888888777776555667777888888888654 555555677888888877
Q ss_pred eCcCCcCCccchhHhhcC
Q 041558 332 GLCKNKLVQELPKILEKL 349 (495)
Q Consensus 332 ~l~~n~l~~~~~~~~~~l 349 (495)
.+..+ ++..-...|..+
T Consensus 339 ~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 339 SYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCCTT-CCEECTTTTTTS
T ss_pred EECCc-cCEEchhHhhCC
Confidence 77544 433333444444
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.28 E-value=1.7e-09 Score=104.71 Aligned_cols=297 Identities=13% Similarity=0.014 Sum_probs=175.5
Q ss_pred ccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCChh
Q 041558 11 LSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPSS 90 (495)
Q Consensus 11 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 90 (495)
++..-..+|.++.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ +......+|.+. +|+.+.+..+ ++.....+
T Consensus 57 vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~ 131 (379)
T 4h09_A 57 ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYI 131 (379)
T ss_dssp EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTT
T ss_pred ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc-cccccccc
Confidence 44334567899999999999754 666777889888 6777777544 455555667664 8999999865 34444455
Q ss_pred hhcCCCCCEEecCCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEcccccc--ccCCCccCcc-cccccccccc
Q 041558 91 FGNLTNLSTSRLSKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCL--SGSIPPSLEN-PMLARLGLDF 167 (495)
Q Consensus 91 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l--~~~~~~~~~~-~~L~~L~l~~ 167 (495)
|.+. +|+.+.+..+ ++......+..+..++........ ........... .......+.. ..+..+.+..
T Consensus 132 F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (379)
T 4h09_A 132 FYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNN------KNYVAENYVLYNKNKTILESYPAAKTGTEFTIPS 203 (379)
T ss_dssp TTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTC------SSEEEETTEEEETTSSEEEECCTTCCCSEEECCT
T ss_pred cccc-eeeeeeccce-eeccccchhccccccccccccccc------ceeecccceecccccceecccccccccccccccc
Confidence 6654 6777766654 334445567777777776651110 00000000000 0000001111 2222222222
Q ss_pred cccccccCccCCCCCCCCEEEccCceeeeccCccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCC
Q 041558 168 NHFKRTIPKSLRSCTSLIRLCRNRNNLTRDISEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIP 247 (495)
Q Consensus 168 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 247 (495)
. ........+..+..|+.+.+..+ +......+|..+..|+.+.+..+ ++..-...|..+.+|+.+.+..+ +.....
T Consensus 204 ~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~ 279 (379)
T 4h09_A 204 T-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPY 279 (379)
T ss_dssp T-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECT
T ss_pred c-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccc
Confidence 1 12233445666677777776544 44445566677777777777654 44455566777777777777543 444344
Q ss_pred ccccCCCCCceeccCCCeeeeecCCCCccccccceeecccccccccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCC
Q 041558 248 REIRNSSQRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQLVGCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLL 326 (495)
Q Consensus 248 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 326 (495)
..|.++.+|+.+.+.++.+...-..+|.++.+|+.+.|..+ ++..-..+|.++++|+.+.+..+ ++.+...+|.++.
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 56777777777777777666555567777778888777654 44344567777788888777654 5444455666654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=2.1e-10 Score=109.42 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=96.3
Q ss_pred CccccCCCCccEEEccCCcCcccCCCCCCCCCCCCEEecccccccccCCcccc--CCCCCceeccCC--Ceeeee-----
Q 041558 199 SEALGIYPYLTFIDLSRNNFHGEIPSNREKCPKLGTLGVLMNTITKGIPREIR--NSSQRQALDLSL--NHIIGE----- 269 (495)
Q Consensus 199 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~ls~--n~l~~~----- 269 (495)
...+..+|+|+.|.+++|.-. .++. + .+++|+.|++..+.+.......+. .+++|+.|+|+. |...+.
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 344566788888888776311 2333 3 377888888888777654333333 578888888753 221111
Q ss_pred cCCCC--ccccccceeecccccccccCCccc---CCCCCCCEEeCCCCcCCCC----chhhhhcCCCCCEEeCcCCcCCc
Q 041558 270 IPKEL--GKLNSLIKLILRRNQLVGCLPTEI---GSPIELEYLDFSVNRFNNL----IPESLENLLKLHYLGLCKNKLVQ 340 (495)
Q Consensus 270 ~~~~~--~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 340 (495)
+...+ ..+++|+.|+|.+|.+.+..+..+ ..+++|++|+|+.|.+++. ++..+..+++|+.|++++|.++.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 00112 246788888888888764322222 2467888888888888764 23334567888888888888765
Q ss_pred cchhHhhc-CCCCCeEeccCCC
Q 041558 341 ELPKILEK-LVQFSELDLSYNF 361 (495)
Q Consensus 341 ~~~~~~~~-l~~L~~l~ls~n~ 361 (495)
..-..+.. + ...++++.++
T Consensus 322 ~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 322 EMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHc--CCEEEecCCc
Confidence 44444443 2 3557777665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=2.9e-10 Score=108.44 Aligned_cols=82 Identities=16% Similarity=0.110 Sum_probs=42.8
Q ss_pred CcCCccCCeeecccCccc---------ccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccCCcccccCCh
Q 041558 19 IGNSQFLWGLDLSNNQFS---------SSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNGNQFISYIPS 89 (495)
Q Consensus 19 ~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 89 (495)
...+++|+.|.+..+... +.+...+..+++|+.|++++|.-. .++. +. +++|++|++..|.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHH
Confidence 445667777766543221 112233455667777777665211 2222 32 56677777766665443223
Q ss_pred hhh--cCCCCCEEecC
Q 041558 90 SFG--NLTNLSTSRLS 103 (495)
Q Consensus 90 ~~~--~l~~L~~L~l~ 103 (495)
.+. .+++|++|+|+
T Consensus 212 ~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHSBCTTCCEEEEE
T ss_pred HHHHccCCCCcEEEEe
Confidence 333 56677777664
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.58 E-value=9.2e-09 Score=92.93 Aligned_cols=105 Identities=23% Similarity=0.273 Sum_probs=67.5
Q ss_pred CcCCccCCe--eecccCccc---ccCCcccccCcccceeecccccccc--cCCccccCCCCCCeeeccCCcccccCChhh
Q 041558 19 IGNSQFLWG--LDLSNNQFS---SSIPLSFGNLSNLIFLYLYENSYFA--SIPSNVGKLKSLGDLQLNGNQFISYIPSSF 91 (495)
Q Consensus 19 ~~~l~~L~~--L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 91 (495)
|...+.|+. ++++.|... +..+....++++|+.|+|++|++.+ .+|..+..+++|++|+|++|.+++. ..+
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l 214 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--REL 214 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhh
Confidence 333444544 556666432 2222222567888888888888877 4456667888888888888888764 334
Q ss_pred hcCC--CCCEEecCCCcccccCCc-------cccCCCCCCEEe
Q 041558 92 GNLT--NLSTSRLSKNKLFVSIPN-------EIGKMRSLNILE 125 (495)
Q Consensus 92 ~~l~--~L~~L~l~~n~~~~~~~~-------~~~~l~~L~~L~ 125 (495)
..+. +|++|+|++|.+.+.+|. .+..+++|+.|+
T Consensus 215 ~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 215 DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4444 888888888888776653 244555555554
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.58 E-value=1.3e-08 Score=91.88 Aligned_cols=81 Identities=25% Similarity=0.258 Sum_probs=66.6
Q ss_pred cCCccCCeeecccCcccc--cCCcccccCcccceeecccccccccCCccccCCC--CCCeeeccCCcccccCC-------
Q 041558 20 GNSQFLWGLDLSNNQFSS--SIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLK--SLGDLQLNGNQFISYIP------- 88 (495)
Q Consensus 20 ~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~------- 88 (495)
.++++|+.|+|++|.+++ .+|..+..+++|++|+|++|++.+. ..+..+. +|++|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 568899999999999997 4567778999999999999998875 3344444 99999999999987665
Q ss_pred hhhhcCCCCCEEec
Q 041558 89 SSFGNLTNLSTSRL 102 (495)
Q Consensus 89 ~~~~~l~~L~~L~l 102 (495)
..+..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 34778999999863
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=8.7e-09 Score=88.62 Aligned_cols=122 Identities=11% Similarity=0.046 Sum_probs=90.1
Q ss_pred CccCcCCccCCeeecccC-ccccc----CCcccccCcccceeeccccccccc----CCccccCCCCCCeeeccCCccccc
Q 041558 16 PLNIGNSQFLWGLDLSNN-QFSSS----IPLSFGNLSNLIFLYLYENSYFAS----IPSNVGKLKSLGDLQLNGNQFISY 86 (495)
Q Consensus 16 ~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~ 86 (495)
...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.++..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344667889999999999 88743 334456778999999999997653 334455668899999999998763
Q ss_pred ----CChhhhcCCCCCEEec--CCCcccccCCccccCCCCCCEEeeecccccCCCCCCEEEcccccccc
Q 041558 87 ----IPSSFGNLTNLSTSRL--SKNKLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLSG 149 (495)
Q Consensus 87 ----~~~~~~~l~~L~~L~l--~~n~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~~ 149 (495)
+..++...++|++|+| ++|.+.......+. ..+...+.|++|++++|.+..
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~------------~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA------------NMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH------------HHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH------------HHHHhCCCcCEEeccCCCCCh
Confidence 4566777889999999 88988654433332 245567788888999998864
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.57 E-value=5.6e-09 Score=89.85 Aligned_cols=121 Identities=12% Similarity=0.060 Sum_probs=87.7
Q ss_pred CCcccccCcccceeecccc-ccccc----CCccccCCCCCCeeeccCCccccc----CChhhhcCCCCCEEecCCCcccc
Q 041558 39 IPLSFGNLSNLIFLYLYEN-SYFAS----IPSNVGKLKSLGDLQLNGNQFISY----IPSSFGNLTNLSTSRLSKNKLFV 109 (495)
Q Consensus 39 ~~~~~~~l~~L~~L~L~~n-~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~ 109 (495)
+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445677889999999998 76542 334456678899999999998752 34556677899999999998865
Q ss_pred cCCccccCCCCCCEEeeecccccCCCCCCEEEc--cccccccCCCccCcc-----cccccccccccccc
Q 041558 110 SIPNEIGKMRSLNILEVLPLSVSNLTNPKELAL--LYNCLSGSIPPSLEN-----PMLARLGLDFNHFK 171 (495)
Q Consensus 110 ~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l--~~n~l~~~~~~~~~~-----~~L~~L~l~~n~~~ 171 (495)
.....+ ...+...+.|++|++ ++|.++......+.. +.|++|++++|.+.
T Consensus 108 ~g~~~l------------~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILAL------------VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHH------------HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHH------------HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 433222 234556778899999 889888765443333 78999999998875
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.21 E-value=3.3e-07 Score=76.69 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=54.9
Q ss_pred CCccCcCCccCCeeecccCcccccCCcccccCcccceeeccccc-ccccCCccccCC----CCCCeeeccCCc-ccccCC
Q 041558 15 IPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENS-YFASIPSNVGKL----KSLGDLQLNGNQ-FISYIP 88 (495)
Q Consensus 15 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l----~~L~~L~l~~n~-l~~~~~ 88 (495)
+|.....-..|+.||++++.++...-..+.+|++|++|+|++|. ++..--..+..+ ++|++|+|++|. ++..--
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 44433333457777777777765544556677777777777774 443322334443 357777777764 554333
Q ss_pred hhhhcCCCCCEEecCCCc
Q 041558 89 SSFGNLTNLSTSRLSKNK 106 (495)
Q Consensus 89 ~~~~~l~~L~~L~l~~n~ 106 (495)
..+..+++|++|+++++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 445667777777777664
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.05 E-value=3.7e-06 Score=70.33 Aligned_cols=82 Identities=15% Similarity=0.078 Sum_probs=34.4
Q ss_pred CCceeccCCCeeeeecCCCCccccccceeeccccc-ccccCCcccCCC----CCCCEEeCCCCc-CCCCchhhhhcCCCC
Q 041558 255 QRQALDLSLNHIIGEIPKELGKLNSLIKLILRRNQ-LVGCLPTEIGSP----IELEYLDFSVNR-FNNLIPESLENLLKL 328 (495)
Q Consensus 255 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 328 (495)
.|+.||+++|.++..--..+..+++|+.|+|++|. +++.--..+..+ ++|++|+|++|. +++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555443322333444455555555542 332222222221 234455554442 443322334444444
Q ss_pred CEEeCcCC
Q 041558 329 HYLGLCKN 336 (495)
Q Consensus 329 ~~L~l~~n 336 (495)
+.|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444444
No 161
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=97.79 E-value=8.4e-06 Score=75.42 Aligned_cols=32 Identities=38% Similarity=0.687 Sum_probs=30.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|||||+++|+|.+++..++|||||++
T Consensus 68 il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~ 99 (299)
T 4asz_A 68 LLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKH 99 (299)
T ss_dssp HHTTCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred HHHhCCCCCCccEEEEEeeCCEEEEEEEcCCC
Confidence 89999999999999999999999999999985
No 162
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=97.76 E-value=9.5e-06 Score=76.16 Aligned_cols=32 Identities=34% Similarity=0.715 Sum_probs=30.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|||||+++|+|.+++..++|||||++
T Consensus 96 il~~l~HpnIV~l~g~~~~~~~~~lV~Ey~~~ 127 (329)
T 4aoj_A 96 LLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRH 127 (329)
T ss_dssp HHTTCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred HHHhCCCCCCCcEEEEEEECCEEEEEEEcCCC
Confidence 89999999999999999999999999999985
No 163
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=97.73 E-value=8.8e-06 Score=75.63 Aligned_cols=32 Identities=13% Similarity=0.193 Sum_probs=30.6
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|||||+++|+|.+++..++|||||++
T Consensus 82 il~~l~HpNIV~l~g~~~~~~~~~lV~Ey~~~ 113 (308)
T 4gt4_A 82 LRARLQHPNVVCLLGVVTKDQPLSMIFSYCSH 113 (308)
T ss_dssp HHHHCCCTTBCCEEEEECSSSSCEEEEECCSS
T ss_pred HHHhCCCCCCCCcceEEEECCEEEEEEEcCCC
Confidence 89999999999999999999999999999985
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.58 E-value=7.4e-05 Score=59.52 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=35.5
Q ss_pred EEeCCCCcCC-CCchhhhhcCCCCCEEeCcCCcCCccchhHhhcCCCCCeEeccCCCCCCCCCccc
Q 041558 306 YLDFSVNRFN-NLIPESLENLLKLHYLGLCKNKLVQELPKILEKLVQFSELDLSYNFLGPIPNSIA 370 (495)
Q Consensus 306 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ls~n~l~~~p~~~~ 370 (495)
.++.+++.++ ..+|..+ .++|+.|+|++|+|+...+..|..+++|+.|++++|++.+-+...+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~ 75 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVP 75 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHH
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHH
Confidence 4555555554 1223221 1346666666666665555666666677777777777755554433
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.44 E-value=3e-05 Score=66.11 Aligned_cols=118 Identities=10% Similarity=0.049 Sum_probs=74.4
Q ss_pred CcCCccCCeeecccC-ccccc----CCcccccCcccceeecccccccccCC----ccccCCCCCCeeeccCCccccc---
Q 041558 19 IGNSQFLWGLDLSNN-QFSSS----IPLSFGNLSNLIFLYLYENSYFASIP----SNVGKLKSLGDLQLNGNQFISY--- 86 (495)
Q Consensus 19 ~~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~--- 86 (495)
+.+-+.|+.|+|++| .|... +...+..-..|+.|+|++|.+..... ..+..-+.|++|+|++|.|+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345678888999885 77532 33445566788999999888765333 3344567899999999988752
Q ss_pred -CChhhhcCCCCCEEecCCC---cccccCCccccCCCCCCEEeeecccccCCCCCCEEEccccccc
Q 041558 87 -IPSSFGNLTNLSTSRLSKN---KLFVSIPNEIGKMRSLNILEVLPLSVSNLTNPKELALLYNCLS 148 (495)
Q Consensus 87 -~~~~~~~l~~L~~L~l~~n---~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n~l~ 148 (495)
+.+++..-+.|++|+|++| .+.......+ ...+..-+.|+.|+++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i------------a~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM------------MMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH------------HHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH------------HHHHHhCCCcCeEeccCCCcc
Confidence 3345666677999999765 3322222222 123444556667777766655
No 166
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=97.39 E-value=8.3e-05 Score=69.00 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=28.1
Q ss_pred ecccccCCceeeeEEEEEeCC----eeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHAR----HSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~----~~~LVyeym~n 495 (495)
.+++++|||||+++|+|.+++ ..+||||||++
T Consensus 50 ~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~ 85 (303)
T 3hmm_A 50 QTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEH 85 (303)
T ss_dssp TSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTT
T ss_pred HHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCC
Confidence 678899999999999998754 56899999985
No 167
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=97.38 E-value=6.7e-05 Score=69.47 Aligned_cols=31 Identities=29% Similarity=0.360 Sum_probs=27.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|||||+++|||.+ +..++|||||++
T Consensus 85 il~~l~HpNIV~l~g~~~~-~~~~iVmEy~~g 115 (307)
T 3omv_A 85 VLRKTRHVNILLFMGYMTK-DNLAIVTQWCEG 115 (307)
T ss_dssp HHTTCCCTTBCCEEEEECS-SSCEEEEECCSS
T ss_pred HHHhCCCCCEeeEEEEEEC-CeEEEEEEcCCC
Confidence 8999999999999999965 567999999985
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=2.5e-05 Score=66.62 Aligned_cols=91 Identities=10% Similarity=-0.031 Sum_probs=56.7
Q ss_pred cccCcccceeecccc-cccc----cCCccccCCCCCCeeeccCCcccc----cCChhhhcCCCCCEEecCCCcccccCCc
Q 041558 43 FGNLSNLIFLYLYEN-SYFA----SIPSNVGKLKSLGDLQLNGNQFIS----YIPSSFGNLTNLSTSRLSKNKLFVSIPN 113 (495)
Q Consensus 43 ~~~l~~L~~L~L~~n-~~~~----~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 113 (495)
+.+-+.|++|+|++| .+.. .+...+..-..|++|+|++|.+.. .+..++..-+.|++|+|++|.+......
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345567888888875 5543 233445566778888888888764 3445566677888888888887544333
Q ss_pred cccCCCCCCEEeeecccccCCCCCCEEEcccc
Q 041558 114 EIGKMRSLNILEVLPLSVSNLTNPKELALLYN 145 (495)
Q Consensus 114 ~~~~l~~L~~L~l~~~~l~~~~~L~~L~l~~n 145 (495)
.+. +.+..-+.|++|++++|
T Consensus 117 ala------------~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLL------------RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHH------------HHTTTTCCCSEEECCCC
T ss_pred HHH------------HHHhhCCceeEEECCCC
Confidence 322 23344455666666543
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.99 E-value=0.0015 Score=51.87 Aligned_cols=57 Identities=26% Similarity=0.290 Sum_probs=46.5
Q ss_pred ceeeccccccc-ccCCcccCCCCCCCEEeCCCCcCCCCchhhhhcCCCCCEEeCcCCcCC
Q 041558 281 IKLILRRNQLV-GCLPTEIGSPIELEYLDFSVNRFNNLIPESLENLLKLHYLGLCKNKLV 339 (495)
Q Consensus 281 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 339 (495)
..++.+++.++ ..+|..+ .++|++|+|++|.|+.+.+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36778888886 3566543 357999999999999988888999999999999999885
No 170
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=96.89 E-value=0.0006 Score=63.77 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=30.5
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|||||+++|++.+++..++|+|||++
T Consensus 103 il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~g 134 (336)
T 4g3f_A 103 ACAGLSSPRIVPLYGAVREGPWVNIFMELLEG 134 (336)
T ss_dssp TTTTCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred HHHhCCCCCCCcEEEEEEECCEEEEEEeccCC
Confidence 89999999999999999999999999999984
No 171
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=96.58 E-value=0.001 Score=62.38 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=30.5
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|||||++++++.+++..++|+|||++
T Consensus 124 il~~l~HpnIV~l~~~~~~~~~~~ivmEy~~g 155 (346)
T 4fih_A 124 IMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 155 (346)
T ss_dssp HHHHCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred HHHhCCCCCCCcEEEEEEECCEEEEEEeCCCC
Confidence 89999999999999999999999999999974
No 172
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=96.56 E-value=0.00087 Score=61.40 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=27.3
Q ss_pred ecccccCCceeeeEEEEEe----CCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSH----ARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~----~~~~~LVyeym~n 495 (495)
++++++|||||+++|++.+ ++..++|+|||++
T Consensus 78 il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~g 113 (290)
T 3fpq_A 78 MLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTS 113 (290)
T ss_dssp HHHTCCCTTBCCEEEEEEEEETTEEEEEEEEECCCS
T ss_pred HHHhCCCCCCCcEEEEEeeccCCCcEEEEEEeCCCC
Confidence 8999999999999999865 2346899999974
No 173
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=96.52 E-value=0.0018 Score=59.64 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=30.5
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|||||++++++.+++..++|+|||++
T Consensus 79 il~~l~HpnIv~l~~~~~~~~~~~ivmEy~~g 110 (304)
T 3ubd_A 79 ILVEVNHPFIVKLHYAFQTEGKLYLILDFLRG 110 (304)
T ss_dssp CCCCCCCTTEECEEEEEEETTEEEEEECCCTT
T ss_pred HHHHCCCCCCCeEEEEEEECCEEEEEEEcCCC
Confidence 89999999999999999999999999999974
No 174
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=96.38 E-value=0.0016 Score=61.18 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=30.4
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|||||++++++.+++..++|+|||++
T Consensus 76 il~~l~HpnIV~~~~~~~~~~~~yiVmEy~~g 107 (350)
T 4b9d_A 76 VLANMKHPNIVQYRESFEENGSLYIVMDYCEG 107 (350)
T ss_dssp HHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred HHHHCCCCCCCcEEEEEEECCEEEEEEeCCCC
Confidence 89999999999999999999999999999974
No 175
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=96.36 E-value=0.0011 Score=62.70 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=27.3
Q ss_pred ecccccC-CceeeeEEEEEeC-CeeEEEecccCC
Q 041558 464 ALTETGH-RNIVKFYGFCSHA-RHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H-~NlV~l~G~c~~~-~~~~LVyeym~n 495 (495)
++++++| ||||+++|+|.+. +..++|+|||++
T Consensus 120 il~~l~hhpnIV~l~g~~~~~~~~~~iV~Ey~~~ 153 (353)
T 4ase_A 120 ILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKF 153 (353)
T ss_dssp HHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTT
T ss_pred HHHHcCCCCcEEEEEEEEEecCCEEEEEEEcCCC
Confidence 7888865 8999999999875 457899999985
No 176
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=96.36 E-value=0.0017 Score=62.69 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=30.5
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|||||++++++.+++..++|+|||++
T Consensus 201 il~~l~HpnIV~l~~~~~~~~~~~iVmEy~~g 232 (423)
T 4fie_A 201 IMRDYQHENVVEMYNSYLVGDELWVVMEFLEG 232 (423)
T ss_dssp HHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred HHHhCCCCCCCceEEEEEECCEEEEEEeCCCC
Confidence 89999999999999999999999999999974
No 177
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=95.99 E-value=0.0041 Score=57.42 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=30.2
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|||||+++++..+++..++|+||+++
T Consensus 85 il~~l~HpnIv~l~~~~~~~~~~yivmEy~~g 116 (311)
T 4aw0_A 85 VMSRLDHPFFVKLYFTFQDDEKLYFGLSYAKN 116 (311)
T ss_dssp HHTTCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred HHHhCCCCCCCeEEEEEEeCCEEEEEEecCCC
Confidence 89999999999999999999999999999974
No 178
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=95.66 E-value=0.0047 Score=56.02 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=29.4
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++++++|||||+++++..+.+..++|+||++
T Consensus 66 il~~l~HpnIv~~~~~~~~~~~~~ivmEy~~ 96 (275)
T 3hyh_A 66 YLRLLRHPHIIKLYDVIKSKDEIIMVIEYAG 96 (275)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEEECCC
T ss_pred HHHHCCCCCCCeEEEEEEECCEEEEEEeCCC
Confidence 7899999999999999999999999999985
No 179
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=95.63 E-value=0.0048 Score=58.99 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=30.0
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|||||+++|+|.+++..++|+|||++
T Consensus 99 ~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~ 130 (373)
T 2qol_A 99 IMGQFDHPNIIRLEGVVTKSKPVMIVTEYMEN 130 (373)
T ss_dssp HHTTCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred HHHhCCCCCCCeEEEEEeeCCceEEEEeCCCC
Confidence 78999999999999999999999999999974
No 180
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=95.58 E-value=0.007 Score=57.80 Aligned_cols=32 Identities=16% Similarity=0.336 Sum_probs=30.3
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++|+|.+++..++|||||++
T Consensus 139 ~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~ 170 (373)
T 2x4f_A 139 VMNQLDHANLIQLYDAFESKNDIVLVMEYVDG 170 (373)
T ss_dssp HHTTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred HHHhCCCCCCCeEEEEEEECCEEEEEEeCCCC
Confidence 88999999999999999999999999999974
No 181
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=95.41 E-value=0.0095 Score=55.13 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=30.1
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+++..++|+|||++
T Consensus 60 ~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~ 91 (310)
T 3s95_A 60 VMRCLEHPNVLKFIGVLYKDKRLNFITEYIKG 91 (310)
T ss_dssp HHTTCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred HHHhCCCcCcccEEEEEecCCeeEEEEEecCC
Confidence 78899999999999999999999999999974
No 182
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=95.29 E-value=0.0088 Score=55.05 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=27.0
Q ss_pred ecccccCCceeeeEEEEEeCCe------------eEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARH------------SFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~------------~~LVyeym~n 495 (495)
++++++|||||++++++.+.+. .++|+||+++
T Consensus 56 il~~l~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~g 99 (299)
T 4g31_A 56 ALAKLEHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRK 99 (299)
T ss_dssp HHTTCCCTTBCCEEEEEEEEC----------CEEEEEEEECCCS
T ss_pred HHHhCCCCCCCeEEEEEEecCccccccccCCCcEEEEEEecCCC
Confidence 8999999999999999876442 5799999974
No 183
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=95.18 E-value=0.012 Score=54.77 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=30.2
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|+|..++..++|+|||++
T Consensus 95 ~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~ 126 (321)
T 2c30_A 95 IMRDYQHFNVVEMYKSYLVGEELWVLMEFLQG 126 (321)
T ss_dssp HHTTCCCTTBCCEEEEEEETTEEEEEECCCCS
T ss_pred HHHhCCCCCcceEEEEEEECCEEEEEEecCCC
Confidence 78999999999999999999999999999974
No 184
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=95.16 E-value=0.0084 Score=57.34 Aligned_cols=32 Identities=28% Similarity=0.556 Sum_probs=30.0
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++|+|.+++..++|+|||++
T Consensus 165 ~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~ 196 (377)
T 3cbl_A 165 ILKQYSHPNIVRLIGVCTQKQPIYIVMELVQG 196 (377)
T ss_dssp HHTTCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred HHHhCCCCCEEEEEEEEecCCCcEEEEEcCCC
Confidence 78999999999999999998899999999974
No 185
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=95.11 E-value=0.0091 Score=55.59 Aligned_cols=32 Identities=25% Similarity=0.580 Sum_probs=30.0
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+++..++|+|||++
T Consensus 88 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~ 119 (321)
T 2qkw_B 88 TLSFCRHPHLVSLIGFCDERNEMILIYKYMEN 119 (321)
T ss_dssp GGGSCCCTTBCCEEEECCCTTCCEEEEECCTT
T ss_pred HHHhCCCCCEeeEEEEEcCCCeEEEEEEcCCC
Confidence 78999999999999999999999999999973
No 186
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=95.01 E-value=0.0079 Score=59.88 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=30.1
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++|+|.+++..++|+|||++
T Consensus 269 ~l~~l~hpniv~l~~~~~~~~~~~lv~E~~~~ 300 (495)
T 1opk_A 269 VMKEIKHPNLVQLLGVCTREPPFYIITEFMTY 300 (495)
T ss_dssp HHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred HHHhcCCCCEeeEEEEEecCCcEEEEEEccCC
Confidence 78999999999999999999999999999974
No 187
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=94.97 E-value=0.012 Score=55.42 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++|+|.+++..++|+|||++
T Consensus 81 ~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~g 112 (345)
T 3hko_A 81 LMKKLHHPNIARLYEVYEDEQYICLVMELCHG 112 (345)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred HHHhCCCCCcceeehhhccCCeEEEEEeCCCC
Confidence 78899999999999999999999999999964
No 188
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=94.96 E-value=0.0089 Score=55.84 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=30.0
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++|+|.+++..++|+|||++
T Consensus 103 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~ 134 (325)
T 3kul_A 103 IMGQFDHPNIIRLEGVVTRGRLAMIVTEYMEN 134 (325)
T ss_dssp HHTTCCCTTBCCEEEEECGGGCCEEEEECCTT
T ss_pred HHHhCCCCCCCcEEEEEEeCCccEEEeeCCCC
Confidence 78999999999999999999999999999974
No 189
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=94.92 E-value=0.013 Score=52.72 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=28.8
Q ss_pred ecccccCCceeeeEEEEEeC--CeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHA--RHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~--~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+. +..++|+|||++
T Consensus 60 ~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~ 93 (271)
T 3kmu_A 60 RLRIFSHPNVLPVLGACQSPPAPHPTLITHWMPY 93 (271)
T ss_dssp GGCCCSCTTEECEEEEECTTTSSSCEEEEECCTT
T ss_pred HHHhcCCCchhheEEEEccCCCCCeEeeecccCC
Confidence 78899999999999999886 677999999974
No 190
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=94.87 E-value=0.011 Score=53.91 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+++..++|+||+++
T Consensus 65 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~ 96 (289)
T 4fvq_A 65 MMSKLSHKHLVLNYGVCVCGDENILVQEFVKF 96 (289)
T ss_dssp HHHTSCCTTBCCEEEEECCTTCCEEEEECCTT
T ss_pred HHHhCCCCCEeEEEEEEEeCCCCEEEEECCCC
Confidence 78899999999999999999999999999973
No 191
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=94.86 E-value=0.011 Score=55.10 Aligned_cols=32 Identities=25% Similarity=0.593 Sum_probs=30.0
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|||+|+++|+|.+++..++|+|||++
T Consensus 80 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~ 111 (326)
T 3uim_A 80 MISMAVHRNLLRLRGFCMTPTERLLVYPYMAN 111 (326)
T ss_dssp GGGTCCCTTBCCCCEEECCSSCCEEEEECCTT
T ss_pred HHHhccCCCccceEEEEecCCceEEEEEeccC
Confidence 78999999999999999999999999999974
No 192
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=94.77 E-value=0.015 Score=55.84 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=30.0
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++|++.+++..++|+|||++
T Consensus 79 ~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~ 110 (389)
T 3gni_B 79 VSKLFNHPNIVPYRATFIADNELWVVTSFMAY 110 (389)
T ss_dssp HHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred HHHhCCCCCCCcEeEEEEECCEEEEEEEccCC
Confidence 78899999999999999999999999999974
No 193
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=94.77 E-value=0.021 Score=54.08 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=30.1
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|+|.+++..++|+|||++
T Consensus 84 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~ 115 (360)
T 3eqc_A 84 VLHECNSPYIVGFYGAFYSDGEISICMEHMDG 115 (360)
T ss_dssp GGGGCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred HHHHCCCCCEEEEeEEEEECCEEEEEEECCCC
Confidence 78899999999999999999999999999974
No 194
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=94.77 E-value=0.02 Score=56.13 Aligned_cols=32 Identities=13% Similarity=-0.004 Sum_probs=30.2
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++++|.+++..++|+|||++
T Consensus 201 ~l~~l~h~~iv~l~~~~~~~~~~~lv~e~~~~ 232 (446)
T 4ejn_A 201 VLQNSRHPFLTALKYSFQTHDRLCFVMEYANG 232 (446)
T ss_dssp CCCCCSCTTSCCEEEEEEETTEEEEEECCCSS
T ss_pred HHHhCCCCeEeeEEEEEeeCCEEEEEEeeCCC
Confidence 78999999999999999999999999999974
No 195
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=94.74 E-value=0.015 Score=56.30 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=30.0
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|||||+++++|.+++..++|+|||++
T Consensus 122 il~~l~hp~Iv~l~~~~~~~~~~~lV~E~~~g 153 (410)
T 3v8s_A 122 IMAFANSPWVVQLFYAFQDDRYLYMVMEYMPG 153 (410)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred HHHhCCCCCCCeEEEEEEECCEEEEEEeCCCC
Confidence 78889999999999999999999999999974
No 196
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=94.67 E-value=0.019 Score=52.63 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+.+++|||+|++++++.+++..++|+|||++
T Consensus 64 ~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g 95 (294)
T 4eqm_A 64 NSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEG 95 (294)
T ss_dssp HHTTCCBTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred HHhcCCCCCCceEEEeeeeCCeEEEEEeCCCC
Confidence 78899999999999999999999999999974
No 197
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=94.66 E-value=0.018 Score=52.15 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+++..++|+||+++
T Consensus 59 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 90 (277)
T 3f3z_A 59 IMKSLDHPNIIRLYETFEDNTDIYLVMELCTG 90 (277)
T ss_dssp HHHTCCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred HHHhCCCCCEeeEEEEEecCCeEEEEEeccCC
Confidence 78899999999999999999999999999963
No 198
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=94.66 E-value=0.016 Score=56.59 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++++|.+++..++|||||++
T Consensus 127 il~~~~hp~Iv~l~~~~~~~~~~~lV~Ey~~g 158 (437)
T 4aw2_A 127 VLVNGDSKWITTLHYAFQDDNNLYLVMDYYVG 158 (437)
T ss_dssp HHHHSCTTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred HHHhCCCCCEEEEEEEEeeCCEEEEEEecCCC
Confidence 78889999999999999999999999999974
No 199
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=94.65 E-value=0.017 Score=53.04 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||++++++..++..++|+|||++
T Consensus 70 ~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~ 101 (297)
T 3fxz_A 70 VMRENKNPNIVNYLDSYLVGDELWVVMEYLAG 101 (297)
T ss_dssp HHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred HHhcCCCCCCCeEeEEEEECCEEEEEEECCCC
Confidence 78889999999999999999999999999964
No 200
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=94.64 E-value=0.016 Score=54.68 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=30.1
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|+|.+++..++|+|||++
T Consensus 101 ~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~ 132 (349)
T 2w4o_A 101 VLLRLSHPNIIKLKEIFETPTEISLVLELVTG 132 (349)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred HHHhCCCCCCcceeeeEecCCeEEEEEEeCCC
Confidence 78999999999999999999999999999974
No 201
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=94.61 E-value=0.015 Score=52.55 Aligned_cols=32 Identities=25% Similarity=0.544 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+++..++|+|||++
T Consensus 58 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 89 (269)
T 4hcu_A 58 VMMKLSHPKLVQLYGVCLEQAPICLVFEFMEH 89 (269)
T ss_dssp HHHTCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred HHHhCCCCCEeeEEEEEecCCceEEEEEeCCC
Confidence 78899999999999999999999999999974
No 202
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=94.61 E-value=0.018 Score=53.49 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=30.0
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++|++..++..++|+|||++
T Consensus 56 ~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~ 87 (317)
T 2pmi_A 56 LMKELKHENIVRLYDVIHTENKLTLVFEFMDN 87 (317)
T ss_dssp HHTTCCBTTBCCEEEEECCTTEEEEEEECCCC
T ss_pred HHHhcCCCCcceEEEEEEECCeEEEEEEecCC
Confidence 78999999999999999999999999999973
No 203
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=94.60 E-value=0.02 Score=52.25 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=30.0
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++++|.+.+..++|+|||++
T Consensus 73 ~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~ 104 (285)
T 3is5_A 73 VLKSLDHPNIIKIFEVFEDYHNMYIVMETCEG 104 (285)
T ss_dssp HHHTCCCTTBCCEEEEEECSSEEEEEECCCSC
T ss_pred HHHhCCCchHHhHHHheecCCeEEEEEEeCCC
Confidence 78899999999999999999999999999974
No 204
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=94.59 E-value=0.017 Score=53.83 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|||+++|+|.+++..++|+||+++
T Consensus 58 ~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~ 89 (323)
T 3tki_A 58 INKMLNHENVVKFYGHRREGNIQYLFLEYCSG 89 (323)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred HHHhCCCCCCCeEEEEEecCCeEEEEEEcCCC
Confidence 78889999999999999999999999999974
No 205
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=94.59 E-value=0.017 Score=53.95 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|++++++...+..++|+|||++
T Consensus 67 ~l~~l~hpnIv~l~~~~~~~~~~~lv~e~~~~ 98 (328)
T 3fe3_A 67 IMKILNHPNIVKLFEVIETEKTLYLIMEYASG 98 (328)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred HHHhCCCCCEeeEEEEEEECCEEEEEEECCCC
Confidence 78889999999999999999999999999974
No 206
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=94.56 E-value=0.018 Score=54.36 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||++++++.+++..++|+|||++
T Consensus 79 ~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g 110 (351)
T 3c0i_A 79 ICHMLKHPHIVELLETYSSDGMLYMVFEFMDG 110 (351)
T ss_dssp HHHHCCCTTBCCEEEEEEETTEEEEEEECCSS
T ss_pred HHHhCCCCCCCcEEEEEEeCCEEEEEEeCCCC
Confidence 78889999999999999999999999999973
No 207
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=94.54 E-value=0.014 Score=54.79 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+++..++|+|||++
T Consensus 103 ~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~ 134 (343)
T 1luf_A 103 LMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAY 134 (343)
T ss_dssp HHHTCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred HHHhCCCCCEEEEEEEEccCCceEEEEecCCC
Confidence 78899999999999999999999999999973
No 208
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=94.53 E-value=0.018 Score=54.30 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=29.5
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++|||+|+++|+|..++..++|+|||+
T Consensus 107 ~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~ 137 (348)
T 1u5q_A 107 FLQKLRHPNTIQYRGCYLREHTAWLVMEYCL 137 (348)
T ss_dssp HHHHCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred HHHhCCCCCEeeEEEEEEECCeEEEEEecCC
Confidence 7889999999999999999999999999986
No 209
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=94.45 E-value=0.024 Score=51.39 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+++..++|+||+++
T Consensus 62 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 93 (279)
T 3fdn_A 62 IQSHLRHPNILRLYGYFHDATRVYLILEYAPL 93 (279)
T ss_dssp HHTTCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred HHHcCCCCCCcchhheEecCCEEEEEEecCCC
Confidence 78889999999999999999999999999973
No 210
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=94.43 E-value=0.021 Score=52.11 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=29.5
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
.+++++|+|+|++++++.+++..++|+||++
T Consensus 84 ~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~ 114 (286)
T 3uqc_A 84 RLSRIDKPGVARVLDVVHTRAGGLVVAEWIR 114 (286)
T ss_dssp HHHTCCCTTBCCEEEEEEETTEEEEEEECCC
T ss_pred HHhcCCCCCcceeeEEEEECCcEEEEEEecC
Confidence 6889999999999999999999999999996
No 211
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=94.40 E-value=0.02 Score=54.39 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||++++++.+++..++|+|||++
T Consensus 81 il~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g 112 (362)
T 2bdw_A 81 ICRKLQHPNIVRLHDSIQEESFHYLVFDLVTG 112 (362)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred HHHhCCCCCCCeEEEEEEeCCEEEEEEecCCC
Confidence 78889999999999999999999999999973
No 212
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=94.37 E-value=0.022 Score=53.03 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|++++++.+.+..++|+||+++
T Consensus 54 ~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~g 85 (321)
T 1tki_A 54 ILNIARHRNILHLHESFESMEELVMIFEFISG 85 (321)
T ss_dssp HHHHSCCTTBCCEEEEEEETTEEEEEECCCCC
T ss_pred HHHhCCCCCCCeEeEEEecCCEEEEEEEeCCC
Confidence 78889999999999999999999999999973
No 213
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=94.36 E-value=0.019 Score=58.03 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=30.2
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
+|++++|||||++++++.+.+..++|+|||++
T Consensus 207 il~~l~hpnIv~l~~~~~~~~~~~iv~E~~~g 238 (573)
T 3uto_A 207 TMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSG 238 (573)
T ss_dssp HHHHTCCTTBCCEEEEEECSSEEEEEEECCCC
T ss_pred HHHhCCCCCCCeEEEEEEECCEEEEEEeecCC
Confidence 78999999999999999999999999999974
No 214
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=94.35 E-value=0.023 Score=51.94 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=29.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|+|.+++..++|+|||++
T Consensus 68 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~ 99 (294)
T 2rku_A 68 IHRSLAHQHVVGFHGFFEDNDFVFVVLELCRR 99 (294)
T ss_dssp HHHTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred HHHhCCCCCEeeeeeeeccCCEEEEEEecCCC
Confidence 78889999999999999999999999999973
No 215
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=94.35 E-value=0.026 Score=51.57 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=29.6
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++|||+|++++++.+++..++|+|||+
T Consensus 54 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 84 (292)
T 3o0g_A 54 LLKELKHKNIVRLHDVLHSDKKLTLVFEFCD 84 (292)
T ss_dssp HHTTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred HHhcCCCCCEeeEEeEEEeCCEEEEEEecCC
Confidence 7899999999999999999999999999986
No 216
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=94.35 E-value=0.026 Score=51.45 Aligned_cols=31 Identities=35% Similarity=0.544 Sum_probs=29.5
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++|||+|+++|++.+++..++|+||++
T Consensus 53 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 83 (288)
T 1ob3_A 53 ILKELKHSNIVKLYDVIHTKKRLVLVFEHLD 83 (288)
T ss_dssp GGGGCCCTTBCCEEEEEECSSCEEEEEECCS
T ss_pred HHHhcCCCCEeeeeeEEccCCeEEEEEEecC
Confidence 7899999999999999999999999999986
No 217
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=94.34 E-value=0.016 Score=53.68 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|++.+.+..++|+|||++
T Consensus 87 ~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~ 118 (309)
T 3p86_A 87 IMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSR 118 (309)
T ss_dssp HHHHCCCTTBCCEEEEECSTTCCEEEEECCTT
T ss_pred HHHhCCCCCEeeEEEEEEECCceEEEEecCCC
Confidence 78899999999999999999999999999974
No 218
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=94.34 E-value=0.021 Score=56.03 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=28.9
Q ss_pred ecccccCCceeeeEEEEEeCC-eeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHAR-HSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~-~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+.+ ..++|+|||++
T Consensus 239 ~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~~~ 271 (450)
T 1k9a_A 239 VMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK 271 (450)
T ss_dssp HHHTCCCTTBCCEEEEEECTTSCEEEEEECCTT
T ss_pred HHHhccCCCEEEEEEEEEcCCCceEEEEEecCC
Confidence 889999999999999998866 68999999974
No 219
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=94.33 E-value=0.015 Score=55.33 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=29.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|+|||+++|+|.+++..++|+|||++
T Consensus 127 ~l~~l~hpnIv~~~~~~~~~~~~~lv~e~~~~ 158 (367)
T 3l9p_A 127 IISKFNHQNIVRCIGVSLQSLPRFILLELMAG 158 (367)
T ss_dssp HHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred HHHhCCCCCCCeEEEEEecCCCCEEEEEeCCC
Confidence 78889999999999999999999999999974
No 220
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=94.31 E-value=0.021 Score=53.12 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=27.7
Q ss_pred ecccccCCceeeeEEEEEeCC----eeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHAR----HSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~----~~~LVyeym~n 495 (495)
.+.+++|||||+++|+|.+++ ..++|+|||++
T Consensus 71 ~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~ 106 (322)
T 3soc_A 71 SLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEK 106 (322)
T ss_dssp TSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTT
T ss_pred HHhcCCCCCchhhcceeccCCCCCceEEEEEecCCC
Confidence 688999999999999998854 35899999974
No 221
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=94.31 E-value=0.028 Score=51.58 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+.+++|||+|+++|++...+..++|+||+++
T Consensus 66 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 97 (303)
T 2vwi_A 66 AMSQCHHPNIVSYYTSFVVKDELWLVMKLLSG 97 (303)
T ss_dssp CCCCCCCTTBCCEEEEEESSSCEEEEEECCTT
T ss_pred HHhhcCCCCEeeEEEEEeecCCcEEEehhccC
Confidence 78899999999999999999999999999963
No 222
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=94.30 E-value=0.016 Score=52.22 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=27.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+++..++|+||+++
T Consensus 59 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 90 (271)
T 3dtc_A 59 LFAMLKHPNIIALRGVCLKEPNLCLVMEFARG 90 (271)
T ss_dssp HHHHCCCTTBCCEEEEECCC--CEEEEECCTT
T ss_pred HHHhcCCCCEeeEEEEEecCCceEEEEEcCCC
Confidence 78889999999999999999999999999964
No 223
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=94.30 E-value=0.021 Score=53.22 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|++++++.+++..++|+||+++
T Consensus 67 ~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~ 98 (326)
T 2y0a_A 67 ILKEIQHPNVITLHEVYENKTDVILILELVAG 98 (326)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred HHHhCCCCCCCcEEEEEEeCCEEEEEEEcCCC
Confidence 78899999999999999999999999999963
No 224
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=94.30 E-value=0.027 Score=50.98 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=29.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|++++++.+++..++|+||+++
T Consensus 64 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 95 (278)
T 3cok_A 64 IHCQLKHPSILELYNYFEDSNYVYLVLEMCHN 95 (278)
T ss_dssp HHTTBCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred HHHhCCCCCeEeEEEEEccCCeEEEEEecCCC
Confidence 78889999999999999999999999999963
No 225
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=94.29 E-value=0.024 Score=53.40 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=30.0
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|++++++.+.+..++|+|||++
T Consensus 61 ~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~~g 92 (347)
T 3zgw_A 61 ALKNLRHQHICQLYHVLETANKIFMVLEYCPG 92 (347)
T ss_dssp HHHTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred HHHhCCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence 78899999999999999999999999999964
No 226
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=94.27 E-value=0.016 Score=55.27 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=29.4
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|||||+++|+|.+.+..++|+||+++
T Consensus 139 ~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~ 171 (370)
T 2psq_A 139 MMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 171 (370)
T ss_dssp HHHHSCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred HHHHhcCCCCEeeEEEEEccCCCEEEEEEcCCC
Confidence 77888 899999999999999999999999974
No 227
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=94.21 E-value=0.021 Score=53.27 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||++++++..++..++|+|||++
T Consensus 74 ~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~ 105 (327)
T 3a62_A 74 ILEEVKHPFIVDLIYAFQTGGKLYLILEYLSG 105 (327)
T ss_dssp HHHHCCCTTBCCEEEEEECSSCEEEEEECCTT
T ss_pred HHHhCCCCCccceeEEEEcCCEEEEEEeCCCC
Confidence 78899999999999999999999999999973
No 228
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=94.20 E-value=0.02 Score=52.85 Aligned_cols=32 Identities=25% Similarity=0.501 Sum_probs=29.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++|+|.+++..++|+||+++
T Consensus 79 ~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~ 110 (314)
T 2ivs_A 79 VLKQVNHPHVIKLYGACSQDGPLLLIVEYAKY 110 (314)
T ss_dssp HHTTCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred HHhhCCCCceeeEEEEEecCCceEEEEeecCC
Confidence 78899999999999999999999999999973
No 229
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=94.19 E-value=0.018 Score=51.80 Aligned_cols=32 Identities=31% Similarity=0.623 Sum_probs=29.6
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+.+++|||+|+++|+|.+++..++|+||+++
T Consensus 56 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 87 (268)
T 3sxs_A 56 TMMKLSHPKLVKFYGVCSKEYPIYIVTEYISN 87 (268)
T ss_dssp HHHHCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred HHHhCCCCCEeeEEEEEccCCceEEEEEccCC
Confidence 78889999999999999999999999999974
No 230
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=94.19 E-value=0.024 Score=51.51 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++++|.+++..++|+|||++
T Consensus 61 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 92 (283)
T 3bhy_A 61 ILREIRHPNIITLHDIFENKTDVVLILELVSG 92 (283)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred HHHhCCCCCeeehhheecCCCeEEEEEeecCC
Confidence 78899999999999999999999999999963
No 231
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=94.16 E-value=0.029 Score=53.21 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||++++++.+++..++|+||+++
T Consensus 68 il~~l~hpnIv~l~~~~~~~~~~~lv~e~~~g 99 (361)
T 2yab_A 68 ILRQVLHPNIITLHDVYENRTDVVLILELVSG 99 (361)
T ss_dssp HHTTCCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred HHHhCCCcCCCcEEEEEEeCCEEEEEEEcCCC
Confidence 78999999999999999999999999999963
No 232
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=94.15 E-value=0.017 Score=53.16 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=29.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+++..++|||||++
T Consensus 83 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 114 (307)
T 2nru_A 83 VMAKCQHENLVELLGFSSDGDDLCLVYVYMPN 114 (307)
T ss_dssp HHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred HHHhcCCCCeEEEEEEEecCCceEEEEEecCC
Confidence 78899999999999999999999999999963
No 233
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=94.13 E-value=0.032 Score=52.03 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++|||+|++++++.+++..++|+||++
T Consensus 86 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 116 (329)
T 3gbz_A 86 LLKELQHRNIIELKSVIHHNHRLHLIFEYAE 116 (329)
T ss_dssp HGGGCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred HHHHcCCCCcceEEEEEecCCEEEEEEecCC
Confidence 8899999999999999999999999999996
No 234
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=94.12 E-value=0.03 Score=53.65 Aligned_cols=32 Identities=9% Similarity=0.141 Sum_probs=30.0
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|||++++++.+++..++|+|||++
T Consensus 101 il~~l~hpnIv~~~~~~~~~~~~~lv~E~~~g 132 (387)
T 1kob_A 101 IMNQLHHPKLINLHDAFEDKYEMVLILEFLSG 132 (387)
T ss_dssp HHTTCCSTTBCCEEEEEECSSEEEEEEECCCC
T ss_pred HHHhCCCcCCCeEEEEEEeCCEEEEEEEcCCC
Confidence 78999999999999999999999999999974
No 235
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=94.10 E-value=0.025 Score=53.68 Aligned_cols=32 Identities=22% Similarity=0.185 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+.+++|||||++++++.+++..++|+|||++
T Consensus 69 ~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~ 100 (361)
T 3uc3_A 69 NHRSLRHPNIVRFKEVILTPTHLAIIMEYASG 100 (361)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred HHHhCCCCCCCcEEEEEeeCCEEEEEEEeCCC
Confidence 78889999999999999999999999999963
No 236
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=94.05 E-value=0.042 Score=51.16 Aligned_cols=32 Identities=38% Similarity=0.406 Sum_probs=28.9
Q ss_pred eccccc-CCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETG-HRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~-H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+.+++ |||||++++++.+++..++|+|||++
T Consensus 58 ~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~ 90 (325)
T 3kn6_A 58 ALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNG 90 (325)
T ss_dssp HHHHTTTCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred HHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCC
Confidence 677776 99999999999999999999999974
No 237
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=94.03 E-value=0.03 Score=55.65 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=30.1
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++++|.+++..++|+||+++
T Consensus 89 ~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~ 120 (494)
T 3lij_A 89 VLKLLDHPNIMKLYDFFEDKRNYYLVMECYKG 120 (494)
T ss_dssp HHTTCCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred HHHhCCCCCCCeEEEEEEeCCEEEEEEecCCC
Confidence 78999999999999999999999999999974
No 238
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=94.02 E-value=0.03 Score=52.45 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|+|.+++..++|+|||++
T Consensus 94 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~ 125 (335)
T 2owb_A 94 IHRSLAHQHVVGFHGFFEDNDFVFVVLELCRR 125 (335)
T ss_dssp HHHTCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred HHHhCCCCCCCeEEEEEecCCeEEEEEecCCC
Confidence 78899999999999999999999999999973
No 239
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=94.00 E-value=0.024 Score=52.28 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|+|.+++..++|+|||++
T Consensus 55 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 86 (311)
T 4agu_A 55 MLKQLKHPNLVNLLEVFRRKRRLHLVFEYCDH 86 (311)
T ss_dssp HHHHCCCTTBCCEEEEEEETTEEEEEEECCSE
T ss_pred HHHhCCCCCccchhheeecCCeEEEEEEeCCC
Confidence 78899999999999999999999999999973
No 240
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=93.98 E-value=0.025 Score=51.92 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=28.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+.+++|||+|+++|+|..++..++|+|||++
T Consensus 69 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 100 (302)
T 2j7t_A 69 ILATCDHPYIVKLLGAYYHDGKLWIMIEFCPG 100 (302)
T ss_dssp HHHHCCCTTBCCEEEEEECC-CEEEEEECCTT
T ss_pred HHhcCCCCCEeeeeeeeeeCCeEEEEEEeCCC
Confidence 78889999999999999999999999999974
No 241
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=93.97 E-value=0.028 Score=51.35 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=29.4
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++|+|+|+++|+|.+.+..++|+||++
T Consensus 72 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 102 (295)
T 2clq_A 72 LHKHLKHKNIVQYLGSFSENGFIKIFMEQVP 102 (295)
T ss_dssp HHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred HHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence 7888999999999999999999999999996
No 242
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=93.97 E-value=0.031 Score=51.22 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=28.6
Q ss_pred ecccccCCceeeeEEEEEe--CCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSH--ARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~--~~~~~LVyeym~n 495 (495)
++.+++|||+|++++++.+ ++..++|+||+++
T Consensus 89 ~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~ 122 (298)
T 2zv2_A 89 ILKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQ 122 (298)
T ss_dssp HHHTCCCTTBCCEEEEEECSSSSEEEEEEECCTT
T ss_pred HHHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCC
Confidence 8899999999999999987 5678999999963
No 243
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=93.95 E-value=0.022 Score=52.76 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=29.3
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++|||+|++++++.+++..++|+|||+
T Consensus 72 ~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~ 102 (311)
T 3niz_A 72 LLKELHHPNIVSLIDVIHSERCLTLVFEFME 102 (311)
T ss_dssp HHHHCCCTTBCCEEEEECCSSCEEEEEECCS
T ss_pred HHHHcCCCCEeeeeeEEccCCEEEEEEcCCC
Confidence 7889999999999999999999999999996
No 244
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=93.86 E-value=0.033 Score=51.74 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=29.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|||||+++|++.+.+..++|+||+++
T Consensus 59 ~l~~l~hp~Iv~~~~~~~~~~~~~lv~e~~~g 90 (318)
T 1fot_A 59 MLSIVTHPFIIRMWGTFQDAQQIFMIMDYIEG 90 (318)
T ss_dssp HHHSCCBTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred HHhhCCCCCCceEeEEEEeCCEEEEEEeCCCC
Confidence 78889999999999999999999999999974
No 245
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=93.83 E-value=0.025 Score=50.83 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=29.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+.+++|||+|+++|+|.+++..++|+||+++
T Consensus 56 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 87 (267)
T 3t9t_A 56 VMMKLSHPKLVQLYGVCLEQAPICLVTEFMEH 87 (267)
T ss_dssp HHHTCCCTTBCCEEEEECSSSSCEEEECCCTT
T ss_pred HHHhCCCCCEeeEEEEEccCCCeEEEEeCCCC
Confidence 78889999999999999999999999999973
No 246
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=93.83 E-value=0.033 Score=51.83 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=29.5
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++|+|+|++++++..++..++|+|||+
T Consensus 53 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 83 (324)
T 3mtl_A 53 LLKDLKHANIVTLHDIIHTEKSLTLVFEYLD 83 (324)
T ss_dssp HHSCCCCTTBCCEEEEEECSSCEEEEEECCS
T ss_pred HHHhcCCCCCCeeeeEEeeCCEEEEEecccc
Confidence 7899999999999999999999999999996
No 247
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=93.83 E-value=0.026 Score=52.81 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=29.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+.+..++|+|||++
T Consensus 99 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~ 130 (333)
T 1mqb_A 99 IMGQFSHHNIIRLEGVISKYKPMMIITEYMEN 130 (333)
T ss_dssp HHHTCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred HHHhCCCCCCCcEEEEEecCCCcEEEEeCCCC
Confidence 78899999999999999999999999999974
No 248
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=93.82 E-value=0.027 Score=52.89 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=30.1
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|+|.+.+..++|+|||++
T Consensus 96 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 127 (348)
T 2pml_X 96 IITDIKNEYCLTCEGIITNYDEVYIIYEYMEN 127 (348)
T ss_dssp HHTTCCCTTBCCCSEEEESSSEEEEEEECCTT
T ss_pred HHHhCCCCCcceEEEEEeeCCeEEEEEeccCC
Confidence 78999999999999999999999999999974
No 249
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=93.78 E-value=0.032 Score=50.66 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=29.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++++|.+++..++|+|||++
T Consensus 58 ~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~ 89 (284)
T 3kk8_A 58 ICRKLQHPNIVRLHDSIQEESFHYLVFDLVTG 89 (284)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred HHHHcCCCCcCeEEEEEEcCCEEEEEEecCCC
Confidence 78889999999999999999999999999963
No 250
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=93.76 E-value=0.036 Score=50.34 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=29.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|++.+++..++|+||+++
T Consensus 67 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 98 (284)
T 2vgo_A 67 IQSHLRHPNILRMYNYFHDRKRIYLMLEFAPR 98 (284)
T ss_dssp HHHTCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred HHhcCCCCCEeeEEEEEEcCCEEEEEEEeCCC
Confidence 78889999999999999999999999999963
No 251
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=93.73 E-value=0.028 Score=51.02 Aligned_cols=32 Identities=25% Similarity=0.632 Sum_probs=29.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++++|.+++..++|+|||++
T Consensus 72 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 103 (283)
T 3gen_A 72 VMMNLSHEKLVQLYGVCTKQRPIFIITEYMAN 103 (283)
T ss_dssp HHHTCCCTTBCCEEEEECSSSSEEEEECCCTT
T ss_pred HHhcCCCCCEeeEEEEEecCCCeEEEEeccCC
Confidence 78899999999999999999999999999963
No 252
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=93.73 E-value=0.037 Score=50.01 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=29.6
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+.+++|+|+|++++++.+++..++|+||+++
T Consensus 64 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 95 (276)
T 2h6d_A 64 NLKLFRHPHIIKLYQVISTPTDFFMVMEYVSG 95 (276)
T ss_dssp HHHTCCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred HHhcCCCCCEeEEEEEEecCCeEEEEEeccCC
Confidence 68889999999999999999999999999963
No 253
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=93.73 E-value=0.042 Score=50.68 Aligned_cols=32 Identities=6% Similarity=0.050 Sum_probs=30.0
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+.+++|||+|+++|++..++..++|+||+++
T Consensus 87 ~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~ 118 (309)
T 2h34_A 87 TAGRLQEPHVVPIHDFGEIDGQLYVDMRLING 118 (309)
T ss_dssp HHTTCCCTTBCCEEEEEEETTEEEEEEECCCC
T ss_pred HHhhcCCCCeeEEEEEEeeCCeEEEEEEecCC
Confidence 78899999999999999999999999999973
No 254
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.68 E-value=0.033 Score=57.82 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=28.6
Q ss_pred ecccccCCceeeeEEEEEeCCe-----eEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARH-----SFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~-----~~LVyeym~n 495 (495)
++.+++|||||+++++|.+.+. .++|+|||++
T Consensus 132 ~l~~l~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g 168 (681)
T 2pzi_A 132 FLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGG 168 (681)
T ss_dssp GGGGCCCTTBCCEEEEEEEECTTSCEEEEEEEECCCC
T ss_pred HHHhcCCCCcCeEeeeEeecCCCCCceeEEEEEeCCC
Confidence 7999999999999999988655 6999999974
No 255
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=93.66 E-value=0.044 Score=51.03 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=29.7
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|||+|+++|++.+++..++|+||+++
T Consensus 78 ~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~ 110 (327)
T 1fvr_A 78 VLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH 110 (327)
T ss_dssp HHTTCCCCTTBCCEEEEEEETTEEEEEECCCTT
T ss_pred HHHhccCCCchhhhceeeeeCCceEEEEecCCC
Confidence 78888 999999999999999999999999963
No 256
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=93.66 E-value=0.036 Score=50.25 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=28.6
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+.++ +|||+|+++|++.+++..++|+||+++
T Consensus 63 ~~~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~ 95 (289)
T 1x8b_A 63 AHAVLGQHSHVVRYFSAWAEDDHMLIQNEYCNG 95 (289)
T ss_dssp HHHHSCSCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred HHHHhCCCCCeeeeeeeeecCCeEEEEEEecCC
Confidence 55666 999999999999999999999999974
No 257
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=93.65 E-value=0.028 Score=57.78 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=27.4
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|||+++|+|. .+..++|||||++
T Consensus 423 il~~l~hpnIv~l~~~~~-~~~~~lv~E~~~~ 453 (635)
T 4fl3_A 423 VMQQLDNPYIVRMIGICE-AESWMLVMEMAEL 453 (635)
T ss_dssp HHHHCCCTTBCCEEEEEE-SSSEEEEEECCTT
T ss_pred HHHhCCCCCEeeEEEEEe-cCCEEEEEEccCC
Confidence 789999999999999995 4567899999974
No 258
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=93.65 E-value=0.022 Score=53.22 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=29.4
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|||+|+++|+|.+++..++|+||+++
T Consensus 102 ~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~ 134 (333)
T 2i1m_A 102 IMSHLGQHENIVNLLGACTHGGPVLVITEYCCY 134 (333)
T ss_dssp HHHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred HHHhhcCCCCeeeEEEEEecCCceEEEEecCCC
Confidence 78888 899999999999999999999999974
No 259
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=93.64 E-value=0.036 Score=55.23 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=30.0
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++++|.+++..++|+||+++
T Consensus 99 ~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~g 130 (504)
T 3q5i_A 99 LLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEG 130 (504)
T ss_dssp HHHTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred HHHhCCCCCCCeEEEEEEcCCEEEEEEecCCC
Confidence 78899999999999999999999999999974
No 260
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=93.59 E-value=0.033 Score=54.40 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||++++++.+++..++|+|||++
T Consensus 63 il~~l~hpnIv~l~~~~~~~~~~~lv~E~~~g 94 (444)
T 3soa_A 63 ICRLLKHPNIVRLHDSISEEGHHYLIFDLVTG 94 (444)
T ss_dssp HHHHCCBTTBCCEEEEEECSSEEEEEECCCBC
T ss_pred HHHhCCCcCCCeEEEEEEECCEEEEEEEeCCC
Confidence 78899999999999999999999999999964
No 261
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=93.58 E-value=0.041 Score=51.13 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=18.8
Q ss_pred ecccccCCceeeeEEEEEeCC
Q 041558 464 ALTETGHRNIVKFYGFCSHAR 484 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~ 484 (495)
++++++|||||+++|+|.+.+
T Consensus 57 ~l~~l~hpniv~~~~~~~~~~ 77 (332)
T 3qd2_B 57 ALAKLEHPGIVRYFNAWLETP 77 (332)
T ss_dssp HHTSCCCTTBCCEEEEEEECC
T ss_pred HHHhCCCCCEeeEEEEEEEec
Confidence 889999999999999997654
No 262
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=93.55 E-value=0.04 Score=52.67 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||++++++.+.+..++|+|||++
T Consensus 68 il~~l~hp~Iv~l~~~~~~~~~~~lv~e~~~g 99 (384)
T 4fr4_A 68 IMQGLEHPFLVNLWYSFQDEEDMFMVVDLLLG 99 (384)
T ss_dssp HHHTCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred HHHhCCCCCCCcEEEEEEeCCEEEEEEecCCC
Confidence 78899999999999999999999999999964
No 263
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=93.54 E-value=0.041 Score=51.58 Aligned_cols=32 Identities=16% Similarity=0.012 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|++++++...+..++|+|||++
T Consensus 58 ~l~~l~hp~iv~l~~~~~~~~~~~lv~E~~~g 89 (337)
T 1o6l_A 58 VLQNTRHPFLTALKYAFQTHDRLCFVMEYANG 89 (337)
T ss_dssp HHHSCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred HHHhCCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence 78889999999999999999999999999974
No 264
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=93.49 E-value=0.039 Score=52.91 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=26.9
Q ss_pred ecccccCCceeeeEEEEEe------CCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSH------ARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~------~~~~~LVyeym~ 494 (495)
+|.+++|||||++++++.. .+..++|+|||+
T Consensus 106 il~~l~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~ 142 (398)
T 4b99_A 106 ILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLME 142 (398)
T ss_dssp HHHHCCCTTBCCEEEECCCSSCTTTCCCEEEEEECCS
T ss_pred HHHhcCCCCcceEeeeeecccccccCCEEEEEEeCCC
Confidence 8999999999999999864 246799999996
No 265
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=93.48 E-value=0.027 Score=52.46 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=29.6
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++|++.+.+..++|+||+++
T Consensus 86 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~ 117 (327)
T 2yfx_A 86 IISKFNHQNIVRCIGVSLQSLPRFILMELMAG 117 (327)
T ss_dssp HHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred HHhhCCCCCCCeEEEEEcCCCCcEEEEecCCC
Confidence 78889999999999999999999999999963
No 266
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=93.46 E-value=0.046 Score=49.30 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=29.6
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|++.+++..++|+||+++
T Consensus 58 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 89 (276)
T 2yex_A 58 INKMLNHENVVKFYGHRREGNIQYLFLEYCSG 89 (276)
T ss_dssp HHHTCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred HHHhcCCCCceeeeeEEEcCCEEEEEEEecCC
Confidence 68889999999999999999999999999963
No 267
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=93.44 E-value=0.03 Score=50.95 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=29.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|+|.+++..++|+||+++
T Consensus 62 ~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~ 93 (288)
T 3kfa_A 62 VMKEIKHPNLVQLLGVCTREPPFYIITEFMTY 93 (288)
T ss_dssp HHHHCCCTTBCCEEEEECSSSSEEEEEECCTT
T ss_pred HHHhCCCCCEeeEEEEEccCCCEEEEEEcCCC
Confidence 78899999999999999999999999999973
No 268
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=93.43 E-value=0.038 Score=56.52 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=27.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++|+|.. +..++|+|||++
T Consensus 389 il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~ 419 (613)
T 2ozo_A 389 IMHQLDNPYIVRLIGVCQA-EALMLVMEMAGG 419 (613)
T ss_dssp HHTTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred HHHhCCCCCEeeEEEEecc-CCeEEEEEeCCC
Confidence 8899999999999999976 568999999974
No 269
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=93.40 E-value=0.047 Score=50.34 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+.+++|+|+|+++|+|.+++..++|+||++.
T Consensus 85 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 116 (310)
T 2wqm_A 85 LLKQLNHPNVIKYYASFIEDNELNIVLELADA 116 (310)
T ss_dssp HHHTCCCTTBCCEEEEEEETTEEEEEEECCCS
T ss_pred HHHhCCCCCEeeEEEEEEcCCcEEEEEecCCC
Confidence 78899999999999999999999999999963
No 270
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=93.39 E-value=0.049 Score=50.99 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=29.4
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++|||||++++++.+++..++|+||++
T Consensus 82 ~l~~l~h~~Iv~~~~~~~~~~~~~lv~e~~~ 112 (335)
T 3dls_A 82 ILSRVEHANIIKVLDIFENQGFFQLVMEKHG 112 (335)
T ss_dssp HHTTCCCTTBCCEEEEEECSSEEEEEEECCT
T ss_pred HHHhCCCCCEeeEEEEEeeCCEEEEEEEeCC
Confidence 8899999999999999999999999999985
No 271
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=93.39 E-value=0.047 Score=51.13 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=29.3
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++|||||++++++...+..++|+||++
T Consensus 62 ~l~~l~hpnIv~l~~~~~~~~~~~lv~E~~~ 92 (336)
T 3h4j_B 62 YLKLLRHPHIIKLYDVITTPTDIVMVIEYAG 92 (336)
T ss_dssp HHTTCCCTTBCCEEEEEECSSEEEEEECCCC
T ss_pred HHHhCCCCCCCeEEEEEEeCCEEEEEEECCC
Confidence 7889999999999999999999999999985
No 272
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=93.38 E-value=0.037 Score=51.29 Aligned_cols=32 Identities=16% Similarity=0.416 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|+|.+++..++|+||+++
T Consensus 81 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 112 (322)
T 1p4o_A 81 VMKEFNCHHVVRLLGVVSQGQPTLVIMELMTR 112 (322)
T ss_dssp HGGGCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred HHHhcCCCCEeeeEEEEccCCccEEEEEeCCC
Confidence 78899999999999999999999999999973
No 273
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=93.37 E-value=0.037 Score=51.59 Aligned_cols=31 Identities=6% Similarity=0.268 Sum_probs=27.4
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++++++|||+|+++|+|.+++ ..+|+|||++
T Consensus 70 ~l~~l~h~~iv~~~~~~~~~~-~~~v~e~~~~ 100 (327)
T 3poz_A 70 VMASVDNPHVCRLLGICLTST-VQLITQLMPF 100 (327)
T ss_dssp HHHHCCBTTBCCEEEEEESSS-EEEEEECCTT
T ss_pred HHHhCCCCCEeEEEEEEecCC-eEEEEEecCC
Confidence 788999999999999998764 7799999974
No 274
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=93.37 E-value=0.057 Score=51.38 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=29.3
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++..++|||||++++++.+.+..++|+|||++
T Consensus 92 ll~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~g 123 (373)
T 2r5t_A 92 LLKNVKHPFLVGLHFSFQTADKLYFVLDYING 123 (373)
T ss_dssp CBCCCCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred HHHhCCCCCCCCEEEEEEeCCEEEEEEeCCCC
Confidence 46889999999999999999999999999974
No 275
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=93.36 E-value=0.026 Score=52.06 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=29.4
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|||+|+++|+|..++..++|+||+++
T Consensus 79 ~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~ 111 (313)
T 1t46_A 79 VLSYLGNHMNIVNLLGACTIGGPTLVITEYCCY 111 (313)
T ss_dssp HHHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred HHhhcccCCCeeeEEEEEecCCCcEEEEecCCC
Confidence 67888 999999999999999999999999964
No 276
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=93.34 E-value=0.037 Score=51.63 Aligned_cols=31 Identities=23% Similarity=0.532 Sum_probs=29.5
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++|+|+|+++++|.+++..++|+||++
T Consensus 77 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 107 (331)
T 4aaa_A 77 LLKQLRHENLVNLLEVCKKKKRWYLVFEFVD 107 (331)
T ss_dssp HHHHCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred HHhhCCCCCEeeEEEEeecCCEEEEEEecCC
Confidence 7889999999999999999999999999986
No 277
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=93.31 E-value=0.041 Score=53.16 Aligned_cols=32 Identities=16% Similarity=0.046 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|||++++++.+.+..++|+|||++
T Consensus 114 il~~~~hp~Iv~l~~~~~~~~~~~lVmE~~~g 145 (412)
T 2vd5_A 114 VLVNGDRRWITQLHFAFQDENYLYLVMEYYVG 145 (412)
T ss_dssp HHHHSCTTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred HHHhcCCCCeeeEEEEEeeCCEEEEEEcCCCC
Confidence 78889999999999999999999999999974
No 278
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=93.30 E-value=0.041 Score=50.94 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+.+++|+|+|+++|+|.+.+..++|+||+++
T Consensus 82 ~l~~l~h~~iv~~~~~~~~~~~~~iv~e~~~~ 113 (319)
T 2y4i_B 82 AYRQTRHENVVLFMGACMSPPHLAIITSLCKG 113 (319)
T ss_dssp GGTTCCCTTBCCCCEEEECSSCEEEECBCCCS
T ss_pred HHhcCCCCCEeEEEEEEecCCceEEEeecccC
Confidence 78999999999999999999999999999973
No 279
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=93.29 E-value=0.034 Score=52.99 Aligned_cols=32 Identities=16% Similarity=0.453 Sum_probs=28.1
Q ss_pred ecccccCCceeeeEEEEEeC-CeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHA-RHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~-~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+. +..++|+|||++
T Consensus 143 il~~l~hpnIv~~~~~~~~~~~~~~lv~e~~~~ 175 (373)
T 3c1x_A 143 IMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKH 175 (373)
T ss_dssp TSTTCCCTTBCCCCEEECCCSSCCEEEEECCTT
T ss_pred HHHhCCCCCcceEEEEEEcCCCCeEEEEECCCC
Confidence 78999999999999999764 467899999974
No 280
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=93.25 E-value=0.055 Score=49.51 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=29.4
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
.+.+++|+|+|+++|++..++..++|+||++
T Consensus 55 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 85 (299)
T 2r3i_A 55 LLKELNHPNIVKLLDVIHTENKLYLVFEFLH 85 (299)
T ss_dssp HHTTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred HHHHcCCCCeeeEEEEEecCCceEEEEEccc
Confidence 7889999999999999999999999999985
No 281
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=93.19 E-value=0.045 Score=50.80 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|++++++.+++..++|+||+++
T Consensus 68 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~ 99 (321)
T 2a2a_A 68 ILRQVLHHNVITLHDVYENRTDVVLILELVSG 99 (321)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred HHHhCCCCCcceEEEEEecCCEEEEEEEcCCC
Confidence 78899999999999999999999999999963
No 282
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=93.18 E-value=0.045 Score=50.28 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|++.+++..++|+||+++
T Consensus 59 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 90 (304)
T 2jam_A 59 VLKKIKHENIVTLEDIYESTTHYYLVMQLVSG 90 (304)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred HHHhCCCCCeeehhhhcccCCEEEEEEEcCCC
Confidence 78899999999999999999999999999963
No 283
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=93.13 E-value=0.054 Score=53.40 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||++++++...+..++|+||+++
T Consensus 69 ~l~~l~HpnIv~l~~~~~~~~~~~lv~E~~~g 100 (476)
T 2y94_A 69 NLKLFRHPHIIKLYQVISTPSDIFMVMEYVSG 100 (476)
T ss_dssp HHTTCCCTTBCCEEEEEECSSEEEEEEECCSS
T ss_pred HHHhCCCCCCCcEEEEEEECCEEEEEEeCCCC
Confidence 78899999999999999999999999999964
No 284
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=93.12 E-value=0.042 Score=49.62 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=29.1
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
.+.+++|||+|+++++|.+++..++|+||+.
T Consensus 66 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 96 (275)
T 2eue_A 66 YLRLLRHPHIIKLYDVIKSKDEIIMVIEYAG 96 (275)
T ss_dssp HHHHCCCTTBCCEEEEEECSSCEEEEEECCC
T ss_pred HHHhCCCCCeEEEEEEEecCCeEEEEehhcC
Confidence 7888999999999999999999999999985
No 285
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=93.11 E-value=0.041 Score=51.23 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=27.1
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+++++|+|||+++|+|. ++..++|+|||++
T Consensus 68 ~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~ 98 (325)
T 3kex_A 68 AIGSLDHAHIVRLLGLCP-GSSLQLVTQYLPL 98 (325)
T ss_dssp HHHTCCCTTBCCEEEEEC-BSSEEEEEECCTT
T ss_pred HHhcCCCCCcCeEEEEEc-CCccEEEEEeCCC
Confidence 788899999999999985 5668899999974
No 286
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=93.09 E-value=0.055 Score=49.19 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=28.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
.+..++|||+|+++|+|.+++..++|+|||+
T Consensus 59 ~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~ 89 (290)
T 3fme_A 59 SMRTVDCPFTVTFYGALFREGDVWICMELMD 89 (290)
T ss_dssp HHTTCCCTTBCCEEEEEECSSSEEEEEECCS
T ss_pred HHHhCCCCeEEEEeeeeeccCCEEEEEehhc
Confidence 4778899999999999999999999999996
No 287
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=93.04 E-value=0.046 Score=50.67 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=28.2
Q ss_pred ecccccCCceeeeEEEEEeCC--eeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHAR--HSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~--~~~LVyeym~n 495 (495)
++.+++|+|+|+++|++...+ ..++|+|||++
T Consensus 60 ~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~ 93 (319)
T 4euu_A 60 VLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPC 93 (319)
T ss_dssp HHHHCCCTTBCCEEEEEECTTTCCEEEEEECCTT
T ss_pred HHHhcCCCCcceEEEEeecCCCceEEEEEeCCCC
Confidence 788999999999999998765 67999999973
No 288
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=93.04 E-value=0.041 Score=53.95 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=27.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++|+|. .+..++|+|||++
T Consensus 236 ~l~~l~h~~iv~l~~~~~-~~~~~lv~e~~~~ 266 (454)
T 1qcf_A 236 VMKTLQHDKLVKLHAVVT-KEPIYIITEFMAK 266 (454)
T ss_dssp HHTTCCCTTBCCEEEEEC-SSSCEEEECCCTT
T ss_pred HHhhCCCCCEeeEEEEEe-CCccEEEEeecCC
Confidence 889999999999999986 6678999999974
No 289
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=93.03 E-value=0.032 Score=52.71 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=27.5
Q ss_pred ecccc-cCCceeeeEEEEEeCCe-eEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARH-SFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~-~~LVyeym~n 495 (495)
++.++ +|||||+++|+|.+.+. .++|+||+++
T Consensus 78 ~l~~l~~hpniv~~~~~~~~~~~~~~iv~e~~~~ 111 (359)
T 3vhe_A 78 ILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKF 111 (359)
T ss_dssp HHHHHCCCTTBCCEEEEECSTTSCCEEEEECCTT
T ss_pred HHHhhcCCcceeeeeeeeecCCCceEEEEEecCC
Confidence 67777 89999999999988654 8999999974
No 290
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=93.00 E-value=0.037 Score=53.65 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=27.2
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++|++ +.+..++|+|||++
T Consensus 193 ~l~~l~hpniv~l~~~~-~~~~~~lv~e~~~~ 223 (419)
T 3i6u_A 193 ILKKLNHPCIIKIKNFF-DAEDYYIVLELMEG 223 (419)
T ss_dssp HHHHCCCTTBCCCCEEE-ESSEEEEEEECCTT
T ss_pred HHHhCCCCCEeeEEEEE-ecCceEEEEEcCCC
Confidence 78999999999999997 45568999999974
No 291
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=92.96 E-value=0.06 Score=50.02 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=28.7
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
.+..++|||||+++|++..++..++|+|||+
T Consensus 74 ~~~~~~h~niv~~~~~~~~~~~~~lv~e~~~ 104 (327)
T 3aln_A 74 VMRSSDCPYIVQFYGALFREGDCWICMELMS 104 (327)
T ss_dssp HHSSCCCTTBCCEEEEEECSSEEEEEECCCS
T ss_pred HHHcCCCCcEeeeeeEEEeCCceEEEEeecC
Confidence 5677899999999999999999999999996
No 292
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=92.89 E-value=0.06 Score=48.97 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|++.+.+..++|+||+++
T Consensus 74 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 105 (287)
T 2wei_A 74 LLKKLDHPNIMKLFEILEDSSSFYIVGELYTG 105 (287)
T ss_dssp HHHTCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred HHHhccCCCccEEEEEEeCCCeEEEEEEccCC
Confidence 78899999999999999999999999999863
No 293
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=92.88 E-value=0.056 Score=49.57 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|+|.+++..++|+||+++
T Consensus 73 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~ 104 (303)
T 3a7i_A 73 VLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGG 104 (303)
T ss_dssp HHHHCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred HHHhCCCCCEeEEEEEEecCCeEEEEEEeCCC
Confidence 78889999999999999999999999999974
No 294
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=92.88 E-value=0.058 Score=50.46 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=28.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
.+..++|+|+|+++|+|.+++..++|+|||+
T Consensus 103 ~~~~~~h~~iv~~~~~~~~~~~~~lv~e~~~ 133 (340)
T 3an0_A 103 SMRTVDCPFTVTFYGALFREGDVWICMELMD 133 (340)
T ss_dssp HHTTCCCTTTCCEEEEEECSSCEEEEECCCS
T ss_pred HHhhcCCCcEEEEeeEEEeCCcEEEEHHHhh
Confidence 4788999999999999999999999999996
No 295
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=92.87 E-value=0.034 Score=53.16 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=29.2
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|||||+++|+|.+++..++|+||+++
T Consensus 127 ~l~~l~~hpnIv~~~~~~~~~~~~~lv~e~~~~ 159 (382)
T 3tt0_A 127 MMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 159 (382)
T ss_dssp HHHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred HHHHhcCCchhhhheeeeccCCceEEEEEecCC
Confidence 67777 999999999999999999999999974
No 296
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=92.84 E-value=0.064 Score=49.49 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=29.4
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
.+.+++|+|+|+++|++.+++..++|+||++
T Consensus 77 ~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 107 (314)
T 3com_A 77 IMQQCDSPHVVKYYGSYFKNTDLWIVMEYCG 107 (314)
T ss_dssp HHHTCCCTTBCCEEEEEEETTEEEEEEECCT
T ss_pred HHHhCCCCCCccEEEEEEeCCEEEEEeecCC
Confidence 7889999999999999999999999999986
No 297
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=92.83 E-value=0.035 Score=51.25 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=26.6
Q ss_pred ecccccCCceeeeEEEEEeCCe----eEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARH----SFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~----~~LVyeym~ 494 (495)
.+.+++|||||++++++...+. .++|+||++
T Consensus 65 ~l~~l~hp~iv~~~~~~~~~~~~~~~~~lv~e~~~ 99 (311)
T 3ork_A 65 NAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVD 99 (311)
T ss_dssp TCCCCCCTTBCCEEEEEEEEETTEEEEEEEEECCC
T ss_pred HHHcCCCCCcceEEEeeeccCCCCcccEEEEecCC
Confidence 7889999999999999876543 389999996
No 298
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=92.78 E-value=0.038 Score=54.20 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=27.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++|+|.+ +..++|+|||++
T Consensus 232 ~l~~l~hp~iv~~~~~~~~-~~~~iv~e~~~~ 262 (452)
T 1fmk_A 232 VMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSK 262 (452)
T ss_dssp HHHHCCCTTBCCEEEEECS-SSCEEEECCCTT
T ss_pred HHHhCCCCCEeeEEEEEcC-CceEEEehhhcC
Confidence 7899999999999999976 678999999974
No 299
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=92.77 E-value=0.036 Score=52.01 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=29.5
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|||||+++|+|..++..++|+||+++
T Consensus 101 ~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~ 133 (344)
T 1rjb_A 101 MMTQLGSHENIVNLLGACTLSGPIYLIFEYCCY 133 (344)
T ss_dssp HHHHHCCCTTBCCEEEEECSSSSCEEEEECCTT
T ss_pred HHHhhcCCCCeeeEEEEEeeCCccEEEEecCCC
Confidence 78888 899999999999999999999999973
No 300
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=92.74 E-value=0.079 Score=48.87 Aligned_cols=27 Identities=11% Similarity=-0.049 Sum_probs=25.4
Q ss_pred ccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 468 TGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 468 ~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
.+|+|+|+++|+|.+++..++|||||.
T Consensus 114 ~~h~~iv~l~~~~~~~~~~~lv~e~~~ 140 (311)
T 3p1a_A 114 GQHPCCVRLEQAWEEGGILYLQTELCG 140 (311)
T ss_dssp CCCTTBCCEEEEEEETTEEEEEEECCC
T ss_pred cCCCcEEEEEEEEEeCCEEEEEEeccC
Confidence 389999999999999999999999985
No 301
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=92.71 E-value=0.038 Score=51.64 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=29.1
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|||+|+++|+|.+.+..++|+||+++
T Consensus 93 ~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~~ 125 (334)
T 2pvf_A 93 MMKMIGKHKNIINLLGACTQDGPLYVIVEYASK 125 (334)
T ss_dssp HHHHHCCCTTBCCEEEEECSSSCCEEEEECCTT
T ss_pred HHHHhhcCCCEeeEEEEEccCCceEEEEECCCC
Confidence 67777 899999999999999999999999974
No 302
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=92.65 E-value=0.072 Score=50.17 Aligned_cols=32 Identities=16% Similarity=0.083 Sum_probs=29.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||++++++.+++..++|+||+++
T Consensus 94 ~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~g 125 (350)
T 1rdq_E 94 ILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAG 125 (350)
T ss_dssp HHTTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred HHHhCCCCCCCeEEEEEEcCCEEEEEEcCCCC
Confidence 78899999999999999999999999999973
No 303
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=92.61 E-value=0.044 Score=51.51 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=29.3
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++|+|+|++++++.+.+..++|+|||+
T Consensus 65 ~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 95 (346)
T 1ua2_A 65 LLQELSHPNIIGLLDAFGHKSNISLVFDFME 95 (346)
T ss_dssp HHHHCCCTTBCCEEEEECCTTCCEEEEECCS
T ss_pred HHhhCCCCCCCeEEEEEeeCCceEEEEEcCC
Confidence 7889999999999999999999999999996
No 304
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=92.59 E-value=0.059 Score=48.67 Aligned_cols=32 Identities=31% Similarity=0.380 Sum_probs=27.9
Q ss_pred ecccccCCceeeeEEEEEe--CCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSH--ARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~--~~~~~LVyeym~n 495 (495)
.+.+++|||+|+++|+|.. ++..++|+||+++
T Consensus 58 ~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~ 91 (279)
T 2w5a_A 58 LLRELKHPNIVRYYDRIIDRTNTTLYIVMEYCEG 91 (279)
T ss_dssp HHHHCCCTTBCCEEEEEEEGGGTEEEEEEECCTT
T ss_pred HHHhcCCCCCCeEEEEEecCCCceEEEEEeCCCC
Confidence 7888999999999999865 5678999999973
No 305
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=92.56 E-value=0.056 Score=49.40 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=28.8
Q ss_pred eccccc-CCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETG-HRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~-H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++ |||+|++++++..++..++|+|||++
T Consensus 76 ~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~ 108 (298)
T 1phk_A 76 ILRKVSGHPNIIQLKDTYETNTFFFLVFDLMKK 108 (298)
T ss_dssp HHHHHTTCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred HHHHhcCCCCEeeeeeeeccCCeEEEEEeccCC
Confidence 677785 99999999999999999999999973
No 306
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=92.56 E-value=0.071 Score=52.74 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||++++++.+.+..++|+||+++
T Consensus 79 ~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~ 110 (484)
T 3nyv_A 79 LLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTG 110 (484)
T ss_dssp HHTTCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred HHHhCCCCCCCcEEEEEEeCCEEEEEEecCCC
Confidence 78999999999999999999999999999863
No 307
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=92.52 E-value=0.06 Score=53.32 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++++|.+.+..++|+||+++
T Consensus 74 ~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~ 105 (486)
T 3mwu_A 74 LLKKLDHPNIMKLFEILEDSSSFYIVGELYTG 105 (486)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred HHHhCCCCCcCeEEEEEEcCCEEEEEEEcCCC
Confidence 78899999999999999999999999999963
No 308
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=92.44 E-value=0.057 Score=49.09 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=27.5
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+| +.+..++|+||+++
T Consensus 63 ~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~ 93 (287)
T 1u59_A 63 IMHQLDNPYIVRLIGVC-QAEALMLVMEMAGG 93 (287)
T ss_dssp HHHHCCCTTBCCEEEEE-ESSSEEEEEECCTT
T ss_pred HHHhCCCCCEeEEEEEe-cCCCcEEEEEeCCC
Confidence 78889999999999999 66678999999974
No 309
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=92.44 E-value=0.044 Score=55.02 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=27.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|||+++|+|.+ +..++|+|||++
T Consensus 315 ~l~~l~hpniv~~~~~~~~-~~~~lv~e~~~~ 345 (535)
T 2h8h_A 315 VMKKLRHEKLVQLYAVVSE-EPIYIVTEYMSK 345 (535)
T ss_dssp HHHHCCCTTBCCEEEEECS-SSCEEEECCCTT
T ss_pred HHHhCCCCCEeeEEEEEee-ccceEeeehhcC
Confidence 7899999999999999976 678999999974
No 310
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=92.44 E-value=0.061 Score=51.66 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=28.2
Q ss_pred ecccccCCceeeeEEEEEeCC--eeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHAR--HSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~--~~~LVyeym~n 495 (495)
++.+++|+|||+++|++...+ ..++|+|||++
T Consensus 60 ~l~~l~hpnIv~~~~~~~~~~~~~~~lv~e~~~~ 93 (396)
T 4eut_A 60 VLKKLNHKNIVKLFAIEEETTTRHKVLIMEFCPC 93 (396)
T ss_dssp HHHHCCCTTBCCEEEEEECTTTCCEEEEECCCTT
T ss_pred HHHhcCCCCCCeEEEeeccCCCCeeEEEEecCCC
Confidence 788999999999999998755 67999999973
No 311
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=92.41 E-value=0.066 Score=50.34 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=28.3
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|||||++++++.+.+..++|+|||++
T Consensus 62 ~l~~~~~hp~iv~l~~~~~~~~~~~lv~e~~~g 94 (345)
T 3a8x_A 62 VFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG 94 (345)
T ss_dssp HHHHTTTCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred HHHhcCCCCccCeEEEEEEeCCEEEEEEeCCCC
Confidence 55565 899999999999999999999999974
No 312
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=92.41 E-value=0.07 Score=49.23 Aligned_cols=32 Identities=25% Similarity=0.546 Sum_probs=28.2
Q ss_pred eccc-ccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTE-TGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~-~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+ .+|||+|++++++.+++..++|+|||++
T Consensus 63 ~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~ 95 (316)
T 2ac3_A 63 MLYQCQGHRNVLELIEFFEEEDRFYLVFEKMRG 95 (316)
T ss_dssp HHHHTCCCTTBCCEEEEEEETTEEEEEEECCTT
T ss_pred HHHHhcCCCCeeeEEEEEeeCCEEEEEEEcCCC
Confidence 4555 5799999999999999999999999973
No 313
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=92.40 E-value=0.074 Score=48.40 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=27.3
Q ss_pred ecccccCCceeeeEEEEEe----CCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSH----ARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~----~~~~~LVyeym~n 495 (495)
++.+++|||+|++++++.. ++..++|+|||++
T Consensus 78 ~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~ 113 (290)
T 1t4h_A 78 MLKGLQHPNIVRFYDSWESTVKGKKCIVLVTELMTS 113 (290)
T ss_dssp HHTTCCCTTBCCEEEEEEEESSSCEEEEEEEECCCS
T ss_pred HHHhCCCCCeeeeeeeeccccCCCceEEEEEEecCC
Confidence 7889999999999999875 3457899999963
No 314
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=92.39 E-value=0.059 Score=48.82 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=26.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+.+++|||+|+++|++ .++..++|+||++.
T Consensus 69 ~l~~l~h~~iv~~~~~~-~~~~~~lv~e~~~~ 99 (281)
T 1mp8_A 69 TMRQFDHPHIVKLIGVI-TENPVWIIMELCTL 99 (281)
T ss_dssp HHHTCCCTTBCCEEEEE-CSSSCEEEEECCTT
T ss_pred HHHhCCCCccceEEEEE-ccCccEEEEecCCC
Confidence 78889999999999998 45678899999973
No 315
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=92.37 E-value=0.069 Score=48.89 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=27.7
Q ss_pred ecccccCCceeeeEEEEEeC--CeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHA--RHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~--~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|+|.+. +..++|+||+++
T Consensus 76 ~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~ 109 (302)
T 4e5w_A 76 ILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPS 109 (302)
T ss_dssp HHHTCCCTTBCCEEEEEEC---CCEEEEEECCTT
T ss_pred HHHhCCCCCeeeeeeEEecCCCceEEEEEEeCCC
Confidence 78899999999999999876 567899999964
No 316
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=92.34 E-value=0.067 Score=48.76 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=27.5
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+| +.+..++|+||++.
T Consensus 71 ~l~~l~h~~i~~~~~~~-~~~~~~lv~e~~~~ 101 (291)
T 1xbb_A 71 VMQQLDNPYIVRMIGIC-EAESWMLVMEMAEL 101 (291)
T ss_dssp HHHTCCCTTBCCEEEEE-ESSSEEEEEECCTT
T ss_pred HHHhCCCCCEEEEEEEE-CCCCcEEEEEeCCC
Confidence 78889999999999999 66778999999973
No 317
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=92.30 E-value=0.19 Score=30.54 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 041558 419 ALFVSIALILIFFIFQKWK 437 (495)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~ 437 (495)
.+++++++..+++++++++
T Consensus 21 v~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhhhH
Confidence 3333334444444444433
No 318
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=92.28 E-value=0.028 Score=51.85 Aligned_cols=30 Identities=40% Similarity=0.563 Sum_probs=26.3
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+.+++|||||+++|+|. +..++|+||+++
T Consensus 54 ~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~~ 83 (307)
T 2eva_A 54 QLSRVNHPNIVKLYGACL--NPVCLVMEYAEG 83 (307)
T ss_dssp HHHHCCCTTBCCEEEBCT--TTTEEEEECCTT
T ss_pred HHhcCCCCCcCeEEEEEc--CCcEEEEEcCCC
Confidence 788999999999999986 457899999974
No 319
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=92.27 E-value=0.067 Score=53.88 Aligned_cols=32 Identities=13% Similarity=0.033 Sum_probs=30.0
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||++++++.+.+..++|+|||++
T Consensus 237 iL~~l~hp~Iv~l~~~~~~~~~l~lVmEy~~g 268 (576)
T 2acx_A 237 ILEKVNSRFVVSLAYAYETKDALCLVLTLMNG 268 (576)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred HHHHcCCCCEeeEEEEEeeCCEEEEEEEcCCC
Confidence 78899999999999999999999999999974
No 320
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=92.26 E-value=0.082 Score=53.94 Aligned_cols=32 Identities=6% Similarity=-0.085 Sum_probs=29.3
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
+++.++|||||+++++..+.+..++|+|||++
T Consensus 245 ll~~~~HP~IV~l~~~f~~~~~lylVmEy~~G 276 (689)
T 3v5w_A 245 LVSTGDCPFIVCMSYAFHTPDKLSFILDLMNG 276 (689)
T ss_dssp HHSSSCCTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred HHhhCCCCCEeEEEEEEEECCEEEEEEecCCC
Confidence 56788999999999999999999999999974
No 321
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=92.25 E-value=0.056 Score=49.61 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=26.1
Q ss_pred ecccccCCceeeeEEEEEe--CCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSH--ARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~--~~~~~LVyeym~ 494 (495)
++.+++|+|+|+++|++.. ++..++|+|||+
T Consensus 59 ~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~ 91 (305)
T 2wtk_C 59 LLRRLRHKNVIQLVDVLYNEEKQKMYMVMEYCV 91 (305)
T ss_dssp HHTTCCCTTBCCEEEEEECC---CEEEEEECCS
T ss_pred HHHhcCCCCeeEEEEEEEcCCCCeEEEEehhcc
Confidence 7889999999999999964 456799999986
No 322
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=92.20 E-value=0.032 Score=51.02 Aligned_cols=32 Identities=38% Similarity=0.492 Sum_probs=27.6
Q ss_pred ecccccCCceeeeEEEEEeC--CeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHA--RHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~--~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|+|... ...++|+|||++
T Consensus 64 ~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~ 97 (295)
T 3ugc_A 64 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 97 (295)
T ss_dssp HHHTCCCTTBCCEEEEECHHHHTSCEEEEECCTT
T ss_pred HHHhCCCCCEeeEEEEEecCCCCceEEEEEeCCC
Confidence 78899999999999999764 457899999964
No 323
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=92.09 E-value=0.082 Score=48.94 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=28.2
Q ss_pred ecccccCCceeeeEEEEEeC--CeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHA--RHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~--~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+. +..++|+||+++
T Consensus 86 ~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~ 119 (318)
T 3lxp_A 86 ILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPL 119 (318)
T ss_dssp HHHHCCCTTBCCEEEEEEETTTTEEEEEECCCTT
T ss_pred HHHhCCCcchhhEEEEEecCCCceEEEEEecccC
Confidence 78899999999999999884 567899999963
No 324
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=92.08 E-value=0.065 Score=49.68 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=26.5
Q ss_pred ecccccCCceeeeEEEEEeCCee------EEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHS------FSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~------~LVyeym~n 495 (495)
++.+++|||+|+++|++...+.. ++|+||+++
T Consensus 78 ~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~ 115 (323)
T 3qup_A 78 CMKEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKH 115 (323)
T ss_dssp HHTTCCCTTBCCCCEEEECC-------CEEEEEECCTT
T ss_pred HHHHCCCCceehhhceeeccccccCCCccEEEEEeccC
Confidence 78899999999999999887665 999999974
No 325
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=92.02 E-value=0.073 Score=49.33 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=27.1
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|++..++ .++|+|||++
T Consensus 68 ~l~~l~h~~i~~~~~~~~~~~-~~lv~e~~~~ 98 (322)
T 2ycf_A 68 ILKKLNHPCIIKIKNFFDAED-YYIVLELMEG 98 (322)
T ss_dssp HHHHCCCTTBCCEEEEEESSS-EEEEEECCTT
T ss_pred HHHhCCCCCCceEeeEEcCCc-eEEEEecCCC
Confidence 788999999999999986654 8999999974
No 326
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=91.99 E-value=0.071 Score=51.16 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=28.1
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|||||++++++.+.+..++|+|||++
T Consensus 105 il~~~~~hp~Iv~l~~~~~~~~~~~lV~E~~~g 137 (396)
T 4dc2_A 105 VFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG 137 (396)
T ss_dssp HHHHHTTCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred HHHhcCCCCCcCeeEEEEEECCEEEEEEEcCCC
Confidence 45554 899999999999999999999999974
No 327
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=91.98 E-value=0.063 Score=50.61 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=26.8
Q ss_pred ecccccCCceeeeEEEEEeCCe-------eEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARH-------SFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~-------~~LVyeym~n 495 (495)
.+++++|||||+++|++...+. .++|+|||++
T Consensus 72 ~l~~l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~~ 110 (360)
T 3e3p_A 72 DLAVLHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPD 110 (360)
T ss_dssp HHHHHCCTTBCCEEEEEEEECSSCTTCEEEEEEEECCSC
T ss_pred HHHhcCCCCcccHHHhhhccccccccceeEEEEeecccc
Confidence 5788899999999999976443 6899999973
No 328
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=91.98 E-value=0.059 Score=49.69 Aligned_cols=32 Identities=13% Similarity=0.444 Sum_probs=26.1
Q ss_pred ecccccCCceeeeEEEEEeCCe-----eEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARH-----SFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~-----~~LVyeym~n 495 (495)
.+.+++|||+|+++|+|.+.+. .++|+|||++
T Consensus 89 ~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~ 125 (313)
T 3brb_A 89 CMKDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKY 125 (313)
T ss_dssp HHHTCCCTTBCCCCEEEEC-------CEEEEEECCTT
T ss_pred HHhcCCCCCeeeeeEEEeeccccCCcccEEEEecccC
Confidence 7889999999999999987654 3899999973
No 329
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=91.97 E-value=0.073 Score=49.97 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=28.1
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|||||++++++.+++..++|+|||++
T Consensus 68 ~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~g 100 (342)
T 2qr7_A 68 ILLRYGQHPNIITLKDVYDDGKYVYVVTELMKG 100 (342)
T ss_dssp HHHHHTTSTTBCCEEEEEECSSEEEEEECCCCS
T ss_pred HHHHhcCCCCcCeEEEEEEcCCEEEEEEeCCCC
Confidence 45555 799999999999999999999999963
No 330
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=91.88 E-value=0.098 Score=47.80 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=24.6
Q ss_pred cccCCceeeeEEEEEeCC----eeEEEecccCC
Q 041558 467 ETGHRNIVKFYGFCSHAR----HSFSVYESLEK 495 (495)
Q Consensus 467 ~~~H~NlV~l~G~c~~~~----~~~LVyeym~n 495 (495)
+++|||+|+++|++...+ ..++|+|||++
T Consensus 53 ~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~ 85 (303)
T 3gxj_A 53 MLRHENILGFIAADNKDNGTWTQLWLVSDYHEH 85 (303)
T ss_dssp TCCC-CBCCEEEEEEEECSSSEEEEEEEECCTT
T ss_pred hccCcceeeeeeecccCCCccceeEEEEeccCC
Confidence 389999999999998876 77999999974
No 331
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=91.87 E-value=0.086 Score=48.61 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=28.6
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++..++|+|+|+++|++.+++..++|+|||.
T Consensus 77 ~~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~ 107 (318)
T 2dyl_A 77 VLKSHDCPYIVQCFGTFITNTDVFIAMELMG 107 (318)
T ss_dssp HHHTTTCTTBCCEEEEEECSSEEEEEECCCS
T ss_pred HHHhcCCCceeeEEEEEecCCcEEEEEeccC
Confidence 5778899999999999999999999999984
No 332
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=91.80 E-value=0.079 Score=47.84 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=27.5
Q ss_pred ecccccCCceeeeEEEEEeCC-eeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHAR-HSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~-~~~LVyeym~n 495 (495)
++.+++|+|+|+++|++.+.+ ..++|+||+++
T Consensus 67 ~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~ 99 (278)
T 1byg_A 67 VMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK 99 (278)
T ss_dssp HHTTCCCTTBCCEEEEECCC--CCEEEECCCTT
T ss_pred HHHhCCCCCEeeEEEEEEcCCCceEEEEecCCC
Confidence 788999999999999987654 67999999974
No 333
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=91.72 E-value=0.1 Score=48.53 Aligned_cols=32 Identities=25% Similarity=0.171 Sum_probs=27.7
Q ss_pred ecccccCCceeeeEEEEEe--CCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSH--ARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~--~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|++.. .+..++|+||+++
T Consensus 77 ~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~ 110 (327)
T 3lxl_A 77 ILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPS 110 (327)
T ss_dssp HHHTCCCTTBCCEEEEEECSSSCEEEEEEECCTT
T ss_pred HHHhcCCCceeEEEEEEecCCCceEEEEEeecCC
Confidence 7889999999999999984 4567899999963
No 334
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=91.71 E-value=0.06 Score=49.24 Aligned_cols=32 Identities=16% Similarity=0.453 Sum_probs=27.8
Q ss_pred ecccccCCceeeeEEEEEeC-CeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHA-RHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~-~~~~LVyeym~n 495 (495)
++.+++|||+|+++++|.+. +..++|+|||++
T Consensus 79 ~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~ 111 (298)
T 3f66_A 79 IMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKH 111 (298)
T ss_dssp HHHTCCCTTBCCCCEEECCSSSCCEEEEECCTT
T ss_pred HHHhCCCCCEeeeeeEEEcCCCceEEEEeCCCC
Confidence 78899999999999998764 467899999974
No 335
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=91.71 E-value=0.082 Score=50.11 Aligned_cols=32 Identities=22% Similarity=0.446 Sum_probs=28.9
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|||+|++++++...+..++|+|||++
T Consensus 152 ~l~~l~~hp~iv~~~~~~~~~~~~~lv~e~~~g 184 (365)
T 2y7j_A 152 ILRQVAGHPHIITLIDSYESSSFMFLVFDLMRK 184 (365)
T ss_dssp HHHHHTTCTTBCCEEEEEEBSSEEEEEECCCTT
T ss_pred HHHHhcCCCCEeEEEEEEeeCCEEEEEEEeCCC
Confidence 56777 799999999999999999999999974
No 336
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=91.69 E-value=0.14 Score=49.76 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=28.5
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.++ +|||||++++++.+++..++|+|||+
T Consensus 70 ~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~~~ 101 (432)
T 3p23_A 70 LLRESDEHPNVIRYFCTEKDRQFQYIAIELCA 101 (432)
T ss_dssp HHHHSCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred HHHhccCCCCcCeEEEEEecCCEEEEEEECCC
Confidence 67777 89999999999999999999999986
No 337
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=91.61 E-value=0.13 Score=47.82 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=26.6
Q ss_pred cccccCCceeeeEEEEEeC----CeeEEEecccCC
Q 041558 465 LTETGHRNIVKFYGFCSHA----RHSFSVYESLEK 495 (495)
Q Consensus 465 l~~~~H~NlV~l~G~c~~~----~~~~LVyeym~n 495 (495)
...++|+|+|+++|+|..+ +..++|+|||++
T Consensus 85 ~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~ 119 (337)
T 3mdy_A 85 TVLMRHENILGFIAADIKGTGSWTQLYLITDYHEN 119 (337)
T ss_dssp STTCCCTTBCCEEEEEEESCGGGCEEEEEECCCTT
T ss_pred HHhhcCCCeeeEEEEEccCCCCCCceEEEEeccCC
Confidence 3446999999999999987 678999999974
No 338
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=91.50 E-value=0.082 Score=50.71 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=26.7
Q ss_pred ecccccCCceeeeEEEEEeCCe------eEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARH------SFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~------~~LVyeym~ 494 (495)
++.+++|+|+|++++++...+. .++|+|||+
T Consensus 85 il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~ 121 (394)
T 4e7w_A 85 IMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVP 121 (394)
T ss_dssp HHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEECCS
T ss_pred HHHhCCCCCcceEEEEEEecCCCCCceEEEEEeeccC
Confidence 8899999999999999976433 679999996
No 339
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=91.49 E-value=0.064 Score=48.97 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=27.9
Q ss_pred ecccccCCceeeeEEEEEeCCee-EEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHS-FSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~-~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+.+.. ++|+||+++
T Consensus 75 ~l~~l~h~~iv~~~~~~~~~~~~~~~v~e~~~~ 107 (298)
T 3pls_A 75 LMRGLNHPNVLALIGIMLPPEGLPHVLLPYMCH 107 (298)
T ss_dssp HHHTCCCTTBCCCCEEECCSSSCCEEEECCCTT
T ss_pred HHHhCCCCCeeeEEEEEecCCCCcEEEEecccC
Confidence 78889999999999999876655 899999863
No 340
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=91.45 E-value=0.17 Score=51.16 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=29.8
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
+|.++ .|+|+|++++|..++++.+||+||+++
T Consensus 294 ~l~~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G 326 (569)
T 4azs_A 294 FLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPG 326 (569)
T ss_dssp HHHSCCTTCCCCCEEEEEECSSEEEEEEECCCS
T ss_pred HHHhcCCCCCeeEEEEEEEECCEEEEEEecCCC
Confidence 78888 799999999999999999999999974
No 341
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=91.38 E-value=0.095 Score=47.85 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=27.2
Q ss_pred ecccccCCceeeeEEEEEe-------------CCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSH-------------ARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~-------------~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.+ .+..++|+||+++
T Consensus 55 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~ 99 (303)
T 1zy4_A 55 LLASLNHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCEN 99 (303)
T ss_dssp HHTTCCCTTBCCEEEEEEECCCCCC------CEEEEEEEEECCCS
T ss_pred HHHhcCchHHHHHHHHHHhhcchhhhhcccccCCceEEEEecCCC
Confidence 7889999999999999876 3456899999973
No 342
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=91.29 E-value=0.1 Score=49.14 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=28.2
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|||||++++++.+.+..++|+|||++
T Consensus 76 il~~~~~hp~Iv~l~~~~~~~~~~~lv~E~~~g 108 (353)
T 3txo_A 76 ILSLARNHPFLTQLFCCFQTPDRLFFVMEFVNG 108 (353)
T ss_dssp HHHHTTTCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred HHHhccCCCceeeEEEEEEeCCEEEEEEeCCCC
Confidence 55555 699999999999999999999999974
No 343
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=91.28 E-value=0.1 Score=52.27 Aligned_cols=32 Identities=16% Similarity=0.042 Sum_probs=29.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||++++++...+..++|+|||++
T Consensus 238 iL~~l~hp~Iv~l~~~~~~~~~l~lVmE~~~g 269 (543)
T 3c4z_A 238 ILAKVHSRFIVSLAYAFETKTDLCLVMTIMNG 269 (543)
T ss_dssp HHHHCCCTTBCCEEEEEECSSEEEEEECCCTT
T ss_pred HHHhcCCCCEeeEEEEEeeCCEEEEEEEeccC
Confidence 78899999999999999999999999999974
No 344
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=91.09 E-value=0.13 Score=49.15 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=17.8
Q ss_pred ecccccCCceeeeEEEEEeC
Q 041558 464 ALTETGHRNIVKFYGFCSHA 483 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~ 483 (495)
++.+++|+|+|++++++...
T Consensus 53 il~~l~hpnIv~l~~~~~~~ 72 (383)
T 3eb0_A 53 IMKVLDHVNIIKLVDYFYTT 72 (383)
T ss_dssp HHTTCCCTTBCCEEEEEEEC
T ss_pred HHHHcCCCCccchhheeeec
Confidence 78999999999999999653
No 345
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=90.95 E-value=0.075 Score=49.08 Aligned_cols=32 Identities=13% Similarity=0.356 Sum_probs=27.4
Q ss_pred ecccccCCceeeeEEEEEe----CCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSH----ARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~----~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|.. .+..++|+||+++
T Consensus 79 ~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~ 114 (317)
T 2buj_A 79 MHRLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKR 114 (317)
T ss_dssp HHHTCCCTTBCCCCEEEEEEETTEEEEEEEEECCTT
T ss_pred HHhhcCCCCeeeEEEEEEeccCCCceeEEEEEeCCC
Confidence 7889999999999999973 3467899999974
No 346
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=90.95 E-value=0.11 Score=48.87 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=27.9
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|||+|++++++.+.+..++|+||+++
T Consensus 70 il~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~g 102 (345)
T 1xjd_A 70 VLSLAWEHPFLTHMFCTFQTKENLFFVMEYLNG 102 (345)
T ss_dssp HHHHHTTCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred HHHhcCCCCCCCcEEEEEEeCCEEEEEEeCCCC
Confidence 45544 899999999999999999999999974
No 347
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=90.92 E-value=0.082 Score=51.20 Aligned_cols=31 Identities=19% Similarity=0.208 Sum_probs=25.9
Q ss_pred ecccccCCceeeeEEEEEeC----Ce--eEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHA----RH--SFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~----~~--~~LVyeym~ 494 (495)
++.+++|+|||+++++|... ++ .++|+|||+
T Consensus 100 il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~ 136 (420)
T 1j1b_A 100 IMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVP 136 (420)
T ss_dssp HHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEECCC
T ss_pred HHHHcCCCCccceeeEEeccCCCCcceeEEeehhccc
Confidence 88999999999999998652 22 468999997
No 348
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=90.89 E-value=0.11 Score=48.89 Aligned_cols=32 Identities=6% Similarity=0.003 Sum_probs=29.0
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|+|+|++++++..++..++|+|||++
T Consensus 111 ~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~ 143 (355)
T 1vzo_A 111 VLEHIRQSPFLVTLHYAFQTETKLHLILDYING 143 (355)
T ss_dssp HHHHHHTCTTBCCEEEEEEETTEEEEEECCCCS
T ss_pred HHHHccCCCceeEEEEEEeeCceEEEEeecCCC
Confidence 67778 699999999999999999999999974
No 349
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=90.87 E-value=0.094 Score=47.39 Aligned_cols=32 Identities=31% Similarity=0.407 Sum_probs=26.9
Q ss_pred ecccccCCceeeeEEEEEe----------------CCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSH----------------ARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~----------------~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|++.. .+..++|+||+++
T Consensus 57 ~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~ 104 (284)
T 2a19_B 57 ALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDK 104 (284)
T ss_dssp HHHHCCCTTBCCEEEEEEEEEEC---------CCEEEEEEEEECCCCS
T ss_pred HHHhCCCCCEEEEeeeEeccccCcccccccccccCcceEEEEEeccCC
Confidence 7889999999999999864 3446899999973
No 350
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=90.83 E-value=0.12 Score=47.59 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=26.8
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++||+. .+..++|+||+++
T Consensus 85 ~l~~l~h~~iv~~~~~~~-~~~~~lv~e~~~~ 115 (307)
T 3lb7_A 85 VLRKTRHVNILLFMGYMT-KDNLAIVTQWCEG 115 (307)
T ss_dssp HHTTCCCTTBCCEEEEEC-SSSCEEEEECCSS
T ss_pred HHHhCCCCCEEEEEEEEc-cCcEEEEEecCCC
Confidence 789999999999999874 5567899999974
No 351
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=90.74 E-value=0.1 Score=49.33 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=28.4
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|||+|+++++..+.+..++|+|||++
T Consensus 72 ~l~~~~~h~nIv~l~~~~~~~~~~~lvmE~~~g 104 (361)
T 4f9c_A 72 CLTVAGGQDNVMGVKYCFRKNDHVVIAMPYLEH 104 (361)
T ss_dssp HHHHTCSBTTBCCCSEEEEETTEEEEEEECCCC
T ss_pred HHHHhcCCCCCceEEEEEEECCEEEEEEeCCCc
Confidence 56666 699999999999999999999999974
No 352
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=90.56 E-value=0.11 Score=50.04 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=27.9
Q ss_pred ecccccCCceeeeEEEEEe--CCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSH--ARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~--~~~~~LVyeym~ 494 (495)
++.+++|||||++++++.. +...++|+||++
T Consensus 71 ~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~ 103 (405)
T 3rgf_A 71 LLRELKHPNVISLQKVFLSHADRKVWLLFDYAE 103 (405)
T ss_dssp HHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS
T ss_pred HHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC
Confidence 7899999999999999965 667899999986
No 353
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=90.54 E-value=0.15 Score=48.19 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=27.1
Q ss_pred cccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 465 LTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 465 l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
+....|+|+|+++++|..++..++|+|||++
T Consensus 121 l~~~~~~~iv~~~~~~~~~~~~~lv~e~~~~ 151 (365)
T 3e7e_A 121 LKPSMQHMFMKFYSAHLFQNGSVLVGELYSY 151 (365)
T ss_dssp SCGGGGGGBCCEEEEEECSSCEEEEECCCCS
T ss_pred hhhhhhhhhhhhheeeecCCCcEEEEeccCC
Confidence 4444599999999999999999999999974
No 354
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=90.47 E-value=0.093 Score=48.33 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=27.1
Q ss_pred ecccc-cCCceeeeEEEEEeCC-eeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHAR-HSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~-~~~LVyeym~n 495 (495)
++.++ +|||+|+++|+|.+.+ ..++|+||+++
T Consensus 83 ~l~~l~~hp~iv~~~~~~~~~~~~~~lv~e~~~~ 116 (316)
T 2xir_A 83 ILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKF 116 (316)
T ss_dssp HHHHHCCCTTBCCEEEEECCTTSCCEEEEECCTT
T ss_pred HHHhcccCCCeeeEEEEEecCCCceEEEEEcCCC
Confidence 67777 7999999999998755 48999999973
No 355
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=90.38 E-value=0.14 Score=48.05 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=27.4
Q ss_pred ecccccCCceeeeEEEEEeC--------CeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHA--------RHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~--------~~~~LVyeym~ 494 (495)
++.+++|+|+|+++++|... +..++|+||++
T Consensus 69 ~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~ 107 (351)
T 3mi9_A 69 ILQLLKHENVVNLIEICRTKASPYNRCKGSIYLVFDFCE 107 (351)
T ss_dssp HHHHCCCTTBCCEEEEEEEC--------CEEEEEEECCS
T ss_pred HHHhccCCCcccHhheeeccccccccCCceEEEEEeccC
Confidence 78899999999999999873 46789999996
No 356
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=90.34 E-value=0.11 Score=48.13 Aligned_cols=32 Identities=34% Similarity=0.433 Sum_probs=26.8
Q ss_pred ecccccCCceeeeEEEEEeCC--eeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHAR--HSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~--~~~LVyeym~n 495 (495)
++.+++|+|+|+++|+|...+ ..++|+||+++
T Consensus 95 ~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~ 128 (326)
T 2w1i_A 95 ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPY 128 (326)
T ss_dssp HHHTCCCTTBCCEEEEECC----CCEEEECCCTT
T ss_pred HHHhCCCCCeeeEEEEEEecCCCceEEEEECCCC
Confidence 788999999999999998754 67899999973
No 357
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=90.26 E-value=0.11 Score=53.52 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=27.1
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||||+++|+|. ++..++|+|||++
T Consensus 444 ~l~~l~HpnIv~l~~~~~-~~~~~lv~E~~~~ 474 (656)
T 2j0j_A 444 TMRQFDHPHIVKLIGVIT-ENPVWIIMELCTL 474 (656)
T ss_dssp HHHHCCCTTBCCEEEEEC-SSSCEEEEECCTT
T ss_pred HHHhCCCCCCCeEEEEEe-cCceEEEEEcCCC
Confidence 788999999999999984 4568999999973
No 358
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=90.16 E-value=0.2 Score=46.74 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=25.6
Q ss_pred cccCCceeeeEEEEEeCC----eeEEEecccCC
Q 041558 467 ETGHRNIVKFYGFCSHAR----HSFSVYESLEK 495 (495)
Q Consensus 467 ~~~H~NlV~l~G~c~~~~----~~~LVyeym~n 495 (495)
+++|||+|+++|++...+ ..++|+||+++
T Consensus 92 ~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~ 124 (342)
T 1b6c_B 92 MLRHENILGFIAADNKDNGTWTQLWLVSDYHEH 124 (342)
T ss_dssp CCCCTTBCCEEEEEECCCSSCCCEEEEECCCTT
T ss_pred hcCCCcEEEEEeeecccCCccceeEEEEeecCC
Confidence 389999999999998876 78999999974
No 359
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=90.06 E-value=0.14 Score=47.57 Aligned_cols=31 Identities=6% Similarity=0.268 Sum_probs=27.2
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|+|..++ ..+|+|||+.
T Consensus 70 ~l~~l~hp~iv~~~~~~~~~~-~~~v~~~~~~ 100 (327)
T 3lzb_A 70 VMASVDNPHVCRLLGICLTST-VQLITQLMPF 100 (327)
T ss_dssp HHTTCCBTTBCCCCEEEESSS-EEEEECCCSS
T ss_pred HHHhCCCCCeeEEEEEEecCC-ceEEEEecCC
Confidence 789999999999999998765 7889999873
No 360
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=89.95 E-value=0.14 Score=46.46 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=25.4
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++|+|+|+++|++.+.. .+|+||++
T Consensus 76 ~l~~l~h~~i~~~~~~~~~~~--~lv~e~~~ 104 (287)
T 4f0f_A 76 IMSNLNHPNIVKLYGLMHNPP--RMVMEFVP 104 (287)
T ss_dssp HHTTCCCTTBCCEEEEETTTT--EEEEECCT
T ss_pred HHHhCCCCCchhhheeecCCC--eEEEEecC
Confidence 788999999999999986554 69999997
No 361
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=89.90 E-value=0.12 Score=46.58 Aligned_cols=31 Identities=16% Similarity=0.435 Sum_probs=26.9
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|+|+|+++|++. .+..++|+||+++
T Consensus 61 ~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~~~ 91 (279)
T 1qpc_A 61 LMKQLQHQRLVRLYAVVT-QEPIYIITEYMEN 91 (279)
T ss_dssp HHHHCCCTTBCCEEEEEC-SSSCEEEEECCTT
T ss_pred HHHhCCCcCcceEEEEEc-CCCcEEEEecCCC
Confidence 788999999999999986 4568999999963
No 362
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=89.77 E-value=0.15 Score=48.43 Aligned_cols=31 Identities=16% Similarity=0.379 Sum_probs=27.5
Q ss_pred ecccccCCceeeeEEEEEeCC------eeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHAR------HSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~------~~~LVyeym~ 494 (495)
++.+++|||+|+++|++...+ ..++|+|||+
T Consensus 77 ~l~~l~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~ 113 (371)
T 2xrw_A 77 LMKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMD 113 (371)
T ss_dssp HHHHCCCTTBCCEEEEECSCCSTTTCCEEEEEEECCS
T ss_pred HHHhcCCCCccceEEeeccccccccccceEEEEEcCC
Confidence 788899999999999998654 6799999996
No 363
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=89.69 E-value=0.092 Score=52.68 Aligned_cols=32 Identities=13% Similarity=-0.021 Sum_probs=29.3
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|++.+|+...+..++|+|||++
T Consensus 392 il~~l~h~nIv~~~~~~~~~~~~~lVmE~~~g 423 (540)
T 3en9_A 392 YLALVKDFGIPAPYIFDVDLDNKRIMMSYING 423 (540)
T ss_dssp HHHHGGGGTCCCCCEEEEETTTTEEEEECCCS
T ss_pred HHHhcCCCCcCceEEEEEeCCccEEEEECCCC
Confidence 78899999999988999898899999999974
No 364
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=89.53 E-value=0.14 Score=46.45 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=27.0
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.+.+++|+|+|+++|++.+++ ..+|+||+++
T Consensus 74 ~l~~l~h~~i~~~~~~~~~~~-~~~v~e~~~~ 104 (291)
T 1u46_A 74 AMHSLDHRNLIRLYGVVLTPP-MKMVTELAPL 104 (291)
T ss_dssp HHHHCCCTTBCCEEEEECSSS-CEEEEECCTT
T ss_pred HHHhCCCCCcccEEEEEccCC-ceeeEecccC
Confidence 788899999999999997755 7899999873
No 365
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=89.47 E-value=0.2 Score=45.66 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=24.8
Q ss_pred cccccCCceeeeEEEEEeC----CeeEEEecccCC
Q 041558 465 LTETGHRNIVKFYGFCSHA----RHSFSVYESLEK 495 (495)
Q Consensus 465 l~~~~H~NlV~l~G~c~~~----~~~~LVyeym~n 495 (495)
..+++|||+|+++|+|... +..++|+||+++
T Consensus 56 ~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~ 90 (301)
T 3q4u_A 56 TVMLRHENILGFIASDMTSRHSSTQLWLITHYHEM 90 (301)
T ss_dssp HTCCCCTTBCCEEEEEEEEETTEEEEEEEECCCTT
T ss_pred HhhccCcCeeeEEEeeccccCCCceeEEehhhccC
Confidence 3348999999999998763 357899999974
No 366
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=89.42 E-value=0.2 Score=45.92 Aligned_cols=30 Identities=27% Similarity=0.565 Sum_probs=24.7
Q ss_pred cccccCCceeeeEEEEEeCC-----eeEEEecccC
Q 041558 465 LTETGHRNIVKFYGFCSHAR-----HSFSVYESLE 494 (495)
Q Consensus 465 l~~~~H~NlV~l~G~c~~~~-----~~~LVyeym~ 494 (495)
+.+++|||+|+++++|...+ ..++|+|||+
T Consensus 68 l~~~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~ 102 (308)
T 3g33_A 68 LEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVD 102 (308)
T ss_dssp HHHHCCTTBCCEEEEEEECCSSSEEEEEEEEECCC
T ss_pred HhhcCCCCeEEeeeeeeccCCCCceeEEEEehhhh
Confidence 44556999999999998765 4689999986
No 367
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=89.29 E-value=0.19 Score=46.47 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=27.2
Q ss_pred ecccc-cCCceeeeEEEEEe------CCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSH------ARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~------~~~~~LVyeym~n 495 (495)
.+.++ +|||+|+++|++.. .+..++|+||++.
T Consensus 73 ~l~~l~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~ 111 (326)
T 2x7f_A 73 MLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGA 111 (326)
T ss_dssp HHHHHCCSTTBCCEEEEEEECC--CCCCEEEEEEECCTT
T ss_pred HHHhccCCCCeeeeeeEEeeccCccccceEEEEEEcCCC
Confidence 56777 89999999999987 4678999999963
No 368
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=89.24 E-value=0.16 Score=47.00 Aligned_cols=30 Identities=23% Similarity=0.558 Sum_probs=25.0
Q ss_pred cccccCCceeeeEEEEE-----eCCeeEEEecccC
Q 041558 465 LTETGHRNIVKFYGFCS-----HARHSFSVYESLE 494 (495)
Q Consensus 465 l~~~~H~NlV~l~G~c~-----~~~~~~LVyeym~ 494 (495)
+.+++|||+|+++|+|. .+...++|+||++
T Consensus 68 l~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~ 102 (326)
T 1blx_A 68 LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD 102 (326)
T ss_dssp HHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCS
T ss_pred hhccCCCCeEeeeeeeeecccCCCceEEEEEecCC
Confidence 44558999999999997 4556789999986
No 369
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=89.23 E-value=0.19 Score=46.26 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=26.5
Q ss_pred ecccccCCceeeeEEEEE--------------eCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCS--------------HARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~--------------~~~~~~LVyeym~ 494 (495)
++.+++|||+|++++++. +.+..++|+||++
T Consensus 61 ~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~ 105 (320)
T 2i6l_A 61 IIRRLDHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYME 105 (320)
T ss_dssp HHHTCCCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEEECCS
T ss_pred HHHhcCCCCeeEEEEeccccccccccccccccccCceeEEeeccC
Confidence 788999999999999874 3467789999986
No 370
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=89.17 E-value=0.17 Score=46.02 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=26.3
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++|+|+|+++||+ ..+..++|+||++
T Consensus 73 ~l~~l~h~~iv~~~~~~-~~~~~~lv~e~~~ 102 (289)
T 3og7_A 73 VLRKTRHVNILLFMGYS-TAPQLAIVTQWCE 102 (289)
T ss_dssp HHTTCCCTTBCCEEEEE-CSSSCEEEEECCC
T ss_pred HHHhCCCCcEEEEEeec-cCCccEEEEEecC
Confidence 78999999999999987 4556799999996
No 371
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=89.12 E-value=0.17 Score=47.80 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=25.9
Q ss_pred ecccccCCceeeeEEEEEeC----CeeEEEeccc
Q 041558 464 ALTETGHRNIVKFYGFCSHA----RHSFSVYESL 493 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~----~~~~LVyeym 493 (495)
.+.+++|+|+|+++|+|.+. ...++|+|||
T Consensus 101 ~~~~l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~ 134 (364)
T 3op5_A 101 RTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF 134 (364)
T ss_dssp HHTTCSCCCSCCEEEEEEEEETTEEEEEEEEECE
T ss_pred HHhhccCCCCCeEEeeeeeccCCcceEEEEEeCC
Confidence 56788999999999999874 3479999998
No 372
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=88.88 E-value=0.19 Score=48.89 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=27.3
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.++ +|||||+++|++.+++..++|+|||+
T Consensus 61 ~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~ 92 (434)
T 2rio_A 61 LLTESDDHPNVIRYYCSETTDRFLYIALELCN 92 (434)
T ss_dssp HHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred HHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence 55554 89999999999999999999999985
No 373
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=88.82 E-value=0.2 Score=47.84 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=26.6
Q ss_pred eccccc-CCceeeeEEEEEeCC--eeEEEecccC
Q 041558 464 ALTETG-HRNIVKFYGFCSHAR--HSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~-H~NlV~l~G~c~~~~--~~~LVyeym~ 494 (495)
.+.+++ |+|+|++++++...+ ..++|+|||+
T Consensus 61 ~l~~l~~h~niv~l~~~~~~~~~~~~~lv~e~~~ 94 (388)
T 3oz6_A 61 ILTELSGHENIVNLLNVLRADNDRDVYLVFDYME 94 (388)
T ss_dssp HHHHTTTCTTBCCEEEEEECTTSSCEEEEEECCS
T ss_pred HHHhccCCCCCCeeeeEEecCCCCEEEEEecccC
Confidence 677787 999999999998654 6799999996
No 374
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=88.77 E-value=0.15 Score=46.01 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=26.4
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|++.+ +..++|+||+++
T Consensus 66 ~l~~l~h~~i~~~~~~~~~-~~~~~v~e~~~~ 96 (281)
T 3cc6_A 66 IMKNLDHPHIVKLIGIIEE-EPTWIIMELYPY 96 (281)
T ss_dssp HHHHHCCTTBCCEEEEECS-SSCEEEEECCTT
T ss_pred HHHhCCCCCcceEEEEEcC-CCCEEEEecCCC
Confidence 7888999999999999754 456899999873
No 375
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=88.75 E-value=0.39 Score=29.06 Aligned_cols=16 Identities=6% Similarity=0.023 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 041558 422 VSIALILIFFIFQKWK 437 (495)
Q Consensus 422 ~~~~~~~~~~~~~~~~ 437 (495)
+++++..+++++|+++
T Consensus 23 v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 23 LVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhhh
Confidence 3333444444444433
No 376
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=88.61 E-value=0.28 Score=46.10 Aligned_cols=32 Identities=9% Similarity=0.053 Sum_probs=28.1
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|+|+|++.+++.+.+..++|+|||++
T Consensus 73 ~l~~~~~hp~iv~l~~~~~~~~~~~lv~E~~~g 105 (353)
T 2i0e_A 73 VLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNG 105 (353)
T ss_dssp HHTCTTCCTTBCCEEEEEECSSEEEEEEECCCS
T ss_pred HHHhcCCCCEEeeEEEEEEcCCEEEEEEeCCCC
Confidence 55555 899999999999999999999999974
No 377
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=88.55 E-value=0.12 Score=50.77 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=26.9
Q ss_pred ecccccCCceeeeEEEEEeC------CeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHA------RHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~------~~~~LVyeym~ 494 (495)
++.+++|||||++++++... ...++|+|||+
T Consensus 114 ~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~ 150 (464)
T 3ttj_A 114 LMKCVNHKNIISLLNVFTPQKTLEEFQDVYLVMELMD 150 (464)
T ss_dssp HHHHCCCTTBCCCSEEECSCCSTTTCCEEEEEEECCS
T ss_pred HHHhCCCCCCCcEEEEEccCCccccCCeEEEEEeCCC
Confidence 78889999999999999754 35699999996
No 378
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=88.20 E-value=0.22 Score=46.63 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=27.1
Q ss_pred ecccccCCceeeeEEEEEe----CCeeEEEeccc
Q 041558 464 ALTETGHRNIVKFYGFCSH----ARHSFSVYESL 493 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~----~~~~~LVyeym 493 (495)
.+.+++|+|+|+++|+|.. ++..++|+|||
T Consensus 101 ~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~ 134 (345)
T 2v62_A 101 ERKQLDYLGIPLFYGSGLTEFKGRSYRFMVMERL 134 (345)
T ss_dssp HHHTCSCCCCCCEEEEEEEESSSCEEEEEEEECE
T ss_pred hhccccccCcceeecccccccCCCcEEEEEEecc
Confidence 5778899999999999988 67889999997
No 379
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=88.12 E-value=0.32 Score=45.73 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=24.8
Q ss_pred ccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 468 TGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 468 ~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++|+|+|+++|++...+..++|+||+.
T Consensus 93 ~~h~~iv~~~~~~~~~~~~~lv~e~~~ 119 (360)
T 3llt_A 93 INNNNIVKYHGKFMYYDHMCLIFEPLG 119 (360)
T ss_dssp TTGGGBCCEEEEEEETTEEEEEECCCC
T ss_pred CCCCCeecccceeeECCeeEEEEcCCC
Confidence 359999999999999999999999984
No 380
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=88.01 E-value=0.18 Score=47.35 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=27.3
Q ss_pred ecccccCCceeeeEEEEEeC-----CeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHA-----RHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~-----~~~~LVyeym~ 494 (495)
++.+++|+|+|+++|+|... ...++|+|||+
T Consensus 62 ~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~ 97 (353)
T 2b9h_A 62 ILKHFKHENIITIFNIQRPDSFENFNEVYIIQELMQ 97 (353)
T ss_dssp HHHHCCCTTBCCEEEECCCSCSTTCCCEEEEECCCS
T ss_pred HHHhCcCCCcCCeeeeecccccCccceEEEEEeccC
Confidence 78889999999999998764 56799999986
No 381
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=87.98 E-value=0.15 Score=47.97 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=26.6
Q ss_pred ecccccCCceeeeEEEEEeCC-----eeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHAR-----HSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~-----~~~LVyeym~ 494 (495)
++.+++|||+|++++++...+ ..++|+|||+
T Consensus 82 ~l~~l~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~ 117 (362)
T 3pg1_A 82 LLNHFHHPNILGLRDIFVHFEEPAMHKLYLVTELMR 117 (362)
T ss_dssp HHHHCCCTTBCCCSEEEEECCTTTCCEEEEEEECCS
T ss_pred HHHhCCCcCccceeeeEEeccCCCcceEEEEEccCC
Confidence 788999999999999996533 4689999986
No 382
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=87.71 E-value=0.36 Score=44.68 Aligned_cols=32 Identities=6% Similarity=0.082 Sum_probs=27.8
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|+|+|++++++.+++..++|+|||++
T Consensus 81 ~l~~l~~~~~iv~~~~~~~~~~~~~lv~e~~~~ 113 (327)
T 3lm5_A 81 VLELAKSCPRVINLHEVYENTSEIILILEYAAG 113 (327)
T ss_dssp HHHHTTTCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred HHHhccCCCCEEEEEEEEEeCCeEEEEEEecCC
Confidence 56666 569999999999999999999999974
No 383
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=87.70 E-value=0.18 Score=48.89 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=27.8
Q ss_pred ecccccCCceeeeEEEEEeC-----CeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHA-----RHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~-----~~~~LVyeym~ 494 (495)
++.+++|+|||++++++... +..++|+|||+
T Consensus 78 ~l~~l~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~ 113 (432)
T 3n9x_A 78 ILNRLKSDYIIRLYDLIIPDDLLKFDELYIVLEIAD 113 (432)
T ss_dssp HHHHCCCTTBCCEEEECCCSCTTTCCCEEEEEECCS
T ss_pred HHHHcCCCCcceEEEEEecCCCCcCCeEEEEEecCC
Confidence 78899999999999999876 56899999986
No 384
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=87.69 E-value=0.16 Score=49.66 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=26.9
Q ss_pred ecccccCCceeeeEEEEEeC-----CeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHA-----RHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~-----~~~~LVyeym~ 494 (495)
++.+++|+|||+++++|... +..++|+|||+
T Consensus 105 ~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e~~~ 140 (458)
T 3rp9_A 105 ILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIAD 140 (458)
T ss_dssp HHHHCCCTTBCCEEEECCCSCTTTCCCEEEEECCCS
T ss_pred HHHhCCCCCCCceEEEEecCCcccCceEEEEEeccc
Confidence 78899999999999999653 46799999985
No 385
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=87.40 E-value=0.31 Score=44.46 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=26.2
Q ss_pred cccccCCceeeeEEEEEe----CCeeEEEecccCC
Q 041558 465 LTETGHRNIVKFYGFCSH----ARHSFSVYESLEK 495 (495)
Q Consensus 465 l~~~~H~NlV~l~G~c~~----~~~~~LVyeym~n 495 (495)
....+|+|+|++++++.. ++..++|+||+++
T Consensus 65 ~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~ 99 (299)
T 3m2w_A 65 WRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDG 99 (299)
T ss_dssp HHHTTSTTBCCEEEEEEEEETTEEEEEEEECCCCS
T ss_pred HHhccCCCchhHHhhhhhhcCCCceEEEEEeecCC
Confidence 366799999999999977 5667999999974
No 386
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=87.39 E-value=0.16 Score=48.16 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=27.5
Q ss_pred ecccccCCceeeeEEEEEeCCee------EEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHS------FSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~------~LVyeym~ 494 (495)
++.+++|||+|++++++...+.. ++|+|||+
T Consensus 94 ~l~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~ 130 (371)
T 4exu_A 94 LLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ 130 (371)
T ss_dssp HHHHCCCTTBCCCSEEECSCSSSTTCCCCEEEEECCC
T ss_pred HHHhcCCCCchhhhhheeccCCcccceeEEEEEcccc
Confidence 78889999999999999876654 99999986
No 387
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=87.34 E-value=0.3 Score=46.82 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=25.1
Q ss_pred cccccCCceeeeEEEEEe----CCeeEEEecccCC
Q 041558 465 LTETGHRNIVKFYGFCSH----ARHSFSVYESLEK 495 (495)
Q Consensus 465 l~~~~H~NlV~l~G~c~~----~~~~~LVyeym~n 495 (495)
....+|+|+|++++++.. ++..++|+|||++
T Consensus 109 ~~~~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~g 143 (400)
T 1nxk_A 109 WRASQCPHIVRIVDVYENLYAGRKCLLIVMECLDG 143 (400)
T ss_dssp HHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCCS
T ss_pred HHhcCCCCcceEeEEEeecccCCcEEEEEEEeCCC
Confidence 345689999999999865 4567899999974
No 388
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=87.32 E-value=0.27 Score=45.52 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=28.0
Q ss_pred eccccc-CCceeeeEEEEEe--CCeeEEEecccCC
Q 041558 464 ALTETG-HRNIVKFYGFCSH--ARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~-H~NlV~l~G~c~~--~~~~~LVyeym~n 495 (495)
++.+++ |+|+|++++++.+ ....++|+||+++
T Consensus 83 ~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~e~~~~ 117 (330)
T 3nsz_A 83 ILENLRGGPNIITLADIVKDPVSRTPALVFEHVNN 117 (330)
T ss_dssp HHHHHTTSTTBCCEEEEEECTTTCCEEEEEECCCC
T ss_pred HHHHcCCCCCEEEeeeeeccCCCCceEEEEeccCc
Confidence 788887 9999999999988 5678999999974
No 389
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=87.23 E-value=0.27 Score=45.60 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=28.7
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.++ +|+|+|++++++..++..++|+|||.
T Consensus 57 ~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~ 88 (330)
T 2izr_A 57 FYKQLGSGDGIPQVYYFGPCGKYNAMVLELLG 88 (330)
T ss_dssp HHHHHCSCTTSCCEEEEEEETTEEEEEEECCC
T ss_pred HHHHhhCCCCCCEEEEEEecCCccEEEEEeCC
Confidence 77888 99999999999999999999999983
No 390
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=86.08 E-value=0.21 Score=46.93 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=26.9
Q ss_pred ecccccCCceeeeEEEEEeCCe------eEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHARH------SFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~------~~LVyeym~ 494 (495)
++.+++|||+|+++|++...+. .++|+|||+
T Consensus 76 ~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~ 112 (353)
T 3coi_A 76 LLKHMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ 112 (353)
T ss_dssp HHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECCS
T ss_pred HHHhcCCCCcccHhheEecccccccceeEEEEecccc
Confidence 7888999999999999987654 399999986
No 391
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=85.21 E-value=0.22 Score=47.12 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=26.7
Q ss_pred ecccccCCceeeeEEEEEeCC------eeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHAR------HSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~------~~~LVyeym~ 494 (495)
++.+++|+|+|++++++...+ +.++|+|||.
T Consensus 77 ~l~~l~hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~~ 113 (367)
T 1cm8_A 77 LLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMG 113 (367)
T ss_dssp HHHHCCBTTBCCCSEEECSCSSTTTCCCCEEEEECCS
T ss_pred HHHhCCCcCCCCceeeEecCCccccCceEEEEEecCC
Confidence 788999999999999998653 4599999984
No 392
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=85.15 E-value=0.15 Score=52.28 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=27.8
Q ss_pred ecccccCCceeeeEEEEEe------CCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSH------ARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~------~~~~~LVyeym~n 495 (495)
++.+++|||+|+++|++.. ++..++|+|||++
T Consensus 65 iL~~L~HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~g 102 (676)
T 3qa8_A 65 IMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEG 102 (676)
T ss_dssp HHHHCCBTTBCCEEECCTTTCCCCTTSSCCCEEECCSS
T ss_pred HHHhCCCCCCCceeeeecccccccCCCeEEEEEEeCCC
Confidence 7889999999999999865 6677999999964
No 393
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=83.69 E-value=0.49 Score=43.99 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=26.4
Q ss_pred ecccccCCceeeeEEEEEe----CCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSH----ARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~----~~~~~LVyeym~n 495 (495)
.+..++|+|+|++++++.. ++..++|+|||++
T Consensus 75 ~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~g 110 (336)
T 3fhr_A 75 HWQASGGPHIVCILDVYENMHHGKRCLLIIMECMEG 110 (336)
T ss_dssp HHHHTTSTTBCCEEEEEEEEETTEEEEEEEEECCTT
T ss_pred HHHhcCCCChHHHHHHHhhccCCCceEEEEEeccCC
Confidence 5667899999999999876 3457899999974
No 394
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=83.37 E-value=0.79 Score=42.41 Aligned_cols=32 Identities=19% Similarity=0.107 Sum_probs=24.6
Q ss_pred ecccccCCceeeeEEEEEe-----CCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSH-----ARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~-----~~~~~LVyeym~n 495 (495)
.+..++|+|+|++++++.. ....++|+|||++
T Consensus 60 ~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~ 96 (336)
T 3g2f_A 60 RVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPN 96 (336)
T ss_dssp TSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCTT
T ss_pred HHHhccCcchhhheecccccccCCCceEEEEEecCCC
Confidence 4567899999999997754 1245799999974
No 395
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=82.97 E-value=0.41 Score=45.12 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=27.0
Q ss_pred ecccccCCceeeeEEEEEeC-----CeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHA-----RHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~-----~~~~LVyeym~ 494 (495)
++.+++|+|||++++++... ...++|+|||+
T Consensus 78 ~l~~l~h~niv~~~~~~~~~~~~~~~~~~iv~e~~~ 113 (364)
T 3qyz_A 78 ILLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLME 113 (364)
T ss_dssp HHHHCCCTTBCCCCEEECCSSTTTCCCEEEEEECCS
T ss_pred HHHhcCCCCCccceeEEecCCccccceEEEEEcccC
Confidence 78899999999999999764 35789999986
No 396
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=82.69 E-value=0.34 Score=44.45 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=22.3
Q ss_pred ecccc----cCCceeeeEEEEEeCCeeEEEecc-cC
Q 041558 464 ALTET----GHRNIVKFYGFCSHARHSFSVYES-LE 494 (495)
Q Consensus 464 ~l~~~----~H~NlV~l~G~c~~~~~~~LVyey-m~ 494 (495)
.+.++ +|+|+|+++|++...+..++|+|| ++
T Consensus 87 ~l~~l~~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~ 122 (312)
T 2iwi_A 87 LLWKVGAGGGHPGVIRLLDWFETQEGFMLVLERPLP 122 (312)
T ss_dssp HHHHHHSSCCCSSBCCEEEEC-----CEEEEECCSS
T ss_pred HHHhhcccCCCCCeeeEEEEEecCCeEEEEEEecCC
Confidence 55555 899999999999999999999999 54
No 397
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=81.48 E-value=0.47 Score=43.86 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=25.0
Q ss_pred eccccc-CCceeeeEEEEEe--------CCeeEEEecccC
Q 041558 464 ALTETG-HRNIVKFYGFCSH--------ARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~-H~NlV~l~G~c~~--------~~~~~LVyeym~ 494 (495)
.+.+++ |+|+|+++|+|.. ....++|+||++
T Consensus 78 ~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~ 117 (337)
T 3ll6_A 78 FMKKLSGHPNIVQFCSAASIGKEESDTGQAEFLLLTELCK 117 (337)
T ss_dssp HHHHHTTSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCS
T ss_pred HHHHhccCCChhhccccccccccccccCCceEEEEEEecC
Confidence 677776 9999999999953 234689999985
No 398
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=80.23 E-value=0.44 Score=45.18 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=24.1
Q ss_pred ecccccCCceeeeE-------EEEEeCC-----------------eeEEEecccC
Q 041558 464 ALTETGHRNIVKFY-------GFCSHAR-----------------HSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~-------G~c~~~~-----------------~~~LVyeym~ 494 (495)
.+++++|||||+++ +++...+ ..++|||||.
T Consensus 129 ~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~ 183 (377)
T 3byv_A 129 LLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQ 183 (377)
T ss_dssp GSTTCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC------CEEESEEEEEECCS
T ss_pred hccccCCHHHHHHHhhhhhhhhhhhccCCccccccccCCCceEEEEEEEEEeccC
Confidence 68888999999999 5554442 2689999984
No 399
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=79.87 E-value=0.87 Score=42.41 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=27.6
Q ss_pred ecccccC--CceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGH--RNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H--~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++| +|+|+++++|.+++..++|+||+.
T Consensus 60 ~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e~~~ 92 (343)
T 3dbq_A 60 YLNKLQQHSDKIIRLYDYEITDQYIYMVMECGN 92 (343)
T ss_dssp HHHHHTTTCTTBCCEEEEEECSSEEEEEECCCS
T ss_pred HHHhhhhcCCceEEEeeeEeeCCEEEEEEeCCC
Confidence 6778877 999999999999999999999753
No 400
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=79.24 E-value=0.57 Score=44.23 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=26.7
Q ss_pred ecccccCCceeeeEEEEEeC------CeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCSHA------RHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~------~~~~LVyeym~ 494 (495)
++.+++|+|+|++++++... ...++|+|||.
T Consensus 81 ~l~~l~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~~ 117 (367)
T 2fst_X 81 LLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMG 117 (367)
T ss_dssp HHHHCCCTTBCCCSEEECSCSSGGGCCCCEEEEECCC
T ss_pred HHHhCCCCCCCcEEEEEecCCccccCCeEEEEecccC
Confidence 78899999999999999754 55799999984
No 401
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=77.96 E-value=1 Score=46.39 Aligned_cols=32 Identities=9% Similarity=0.053 Sum_probs=27.6
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.++ +|++||++.+++.+.+..++|+|||++
T Consensus 394 ~l~~~~~~~~i~~l~~~~~~~~~~~lV~E~~~g 426 (674)
T 3pfq_A 394 VLALPGKPPFLTQLHSCFQTMDRLYFVMEYVNG 426 (674)
T ss_dssp HHTCTTCCTTBCCEEEECBCSSEEEEEEECCCS
T ss_pred HHHhccCCCeEEEEEEEEEeCCEEEEEEeCcCC
Confidence 55555 899999999999888899999999974
No 402
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=77.65 E-value=0.52 Score=44.12 Aligned_cols=30 Identities=27% Similarity=0.332 Sum_probs=26.5
Q ss_pred ecccccCCceee---------------eEEEEEe-CCeeEEEeccc
Q 041558 464 ALTETGHRNIVK---------------FYGFCSH-ARHSFSVYESL 493 (495)
Q Consensus 464 ~l~~~~H~NlV~---------------l~G~c~~-~~~~~LVyeym 493 (495)
++.+++|+|+|+ ++|++.. ++..++|+|||
T Consensus 95 ~l~~l~h~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~ 140 (352)
T 2jii_A 95 FFQRAAKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL 140 (352)
T ss_dssp HHHHHCCHHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECC
T ss_pred HHHHhcccchhhhhhhhccCCccCccchhhccccCCcEEEEEecCC
Confidence 788899999988 7889987 77889999998
No 403
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=77.59 E-value=1.8 Score=41.71 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=25.4
Q ss_pred cccCCceeeeEEEEEeCCeeEEEecccC
Q 041558 467 ETGHRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 467 ~~~H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
...|+|+|++++++...+..++|||||+
T Consensus 155 ~~~~~~iv~~~~~~~~~~~~~lv~e~~~ 182 (429)
T 3kvw_A 155 KDNTMNVIHMLENFTFRNHICMTFELLS 182 (429)
T ss_dssp TTSCSCBCCEEEEEEETTEEEEEECCCC
T ss_pred ccCCcCEEEEEeecccCCeEEEEEeccC
Confidence 3478899999999999999999999996
No 404
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=77.05 E-value=1.3 Score=39.97 Aligned_cols=30 Identities=23% Similarity=0.280 Sum_probs=27.5
Q ss_pred ecccc-cCCceeeeEEEEEeCCeeEEEeccc
Q 041558 464 ALTET-GHRNIVKFYGFCSHARHSFSVYESL 493 (495)
Q Consensus 464 ~l~~~-~H~NlV~l~G~c~~~~~~~LVyeym 493 (495)
.+.++ +|+|++++++++.+++..++|+||+
T Consensus 58 ~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~ 88 (298)
T 1csn_A 58 TYKLLAGCTGIPNVYYFGQEGLHNVLVIDLL 88 (298)
T ss_dssp HHHHTTTCTTCCCEEEEEEETTEEEEEEECC
T ss_pred HHHHHhcCCCCCeEEeecCCCceeEEEEEec
Confidence 56677 8999999999999999999999998
No 405
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=76.88 E-value=1.2 Score=42.42 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=26.7
Q ss_pred eccccc--CCceeeeEEEEEeCCeeEEEeccc
Q 041558 464 ALTETG--HRNIVKFYGFCSHARHSFSVYESL 493 (495)
Q Consensus 464 ~l~~~~--H~NlV~l~G~c~~~~~~~LVyeym 493 (495)
++.+++ |+|+|++++|+..++..++|+||+
T Consensus 107 ~l~~l~~~~~~iv~~~~~~~~~~~~~lv~E~~ 138 (390)
T 2zmd_A 107 YLNKLQQHSDKIIRLYDYEITDQYIYMVMECG 138 (390)
T ss_dssp HHHHHTTTCTTBCCEEEEEECSSEEEEEEECC
T ss_pred HHHHcccCCCeEEEEEEEEecCCEEEEEEecC
Confidence 677776 599999999999999999999975
No 406
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=75.41 E-value=7 Score=28.67 Aligned_cols=45 Identities=13% Similarity=-0.012 Sum_probs=23.8
Q ss_pred ccccCCcccccCcccceeecccccccccCCccccCCCCCCeeeccC
Q 041558 35 FSSSIPLSFGNLSNLIFLYLYENSYFASIPSNVGKLKSLGDLQLNG 80 (495)
Q Consensus 35 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 80 (495)
++.+...+|.+|.+|+.+.+-.+ ++.+-..+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34344455566666666655433 3444445555666666665544
No 407
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=72.94 E-value=1.8 Score=39.76 Aligned_cols=31 Identities=10% Similarity=0.238 Sum_probs=27.6
Q ss_pred eccccc--CCceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETG--HRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~--H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++ |+|+|++++++.+++..++|+||+.
T Consensus 99 ~l~~l~~~~~~i~~~~~~~~~~~~~~lv~e~~~ 131 (320)
T 3a99_A 99 LLKKVSSGFSGVIRLLDWFERPDSFVLILERPE 131 (320)
T ss_dssp HHHHHCSSSCSBCCEEEEEECSSEEEEEEECCS
T ss_pred HHHhhccCCCCceEEEEEEecCCcEEEEEEcCC
Confidence 677775 5999999999999999999999985
No 408
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=70.49 E-value=2.7 Score=38.79 Aligned_cols=13 Identities=23% Similarity=0.005 Sum_probs=10.7
Q ss_pred CCeeEEEecccCC
Q 041558 483 ARHSFSVYESLEK 495 (495)
Q Consensus 483 ~~~~~LVyeym~n 495 (495)
++..++|+|||+.
T Consensus 134 ~~~~~lv~E~~~~ 146 (336)
T 2vuw_A 134 DDQLFIVLEFEFG 146 (336)
T ss_dssp TTCEEEEEEEECC
T ss_pred cCeEEEEEEecCC
Confidence 5788999999863
No 409
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=70.49 E-value=2 Score=39.10 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=26.5
Q ss_pred eccccc--CCceeeeEEEEEeCCeeEEEeccc
Q 041558 464 ALTETG--HRNIVKFYGFCSHARHSFSVYESL 493 (495)
Q Consensus 464 ~l~~~~--H~NlV~l~G~c~~~~~~~LVyeym 493 (495)
.+.+++ |+|+|++++++.+++..++|+||.
T Consensus 79 ~l~~l~~~~~~iv~~~~~~~~~~~~~lv~e~~ 110 (313)
T 3cek_A 79 YLNKLQQHSDKIIRLYDYEITDQYIYMVMECG 110 (313)
T ss_dssp HHHHHGGGCTTBCCEEEEEECSSEEEEEECCC
T ss_pred HHHhccccCCceEEEEEEeecCCEEEEEEecC
Confidence 677777 499999999999999999999975
No 410
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=69.57 E-value=1.4 Score=41.80 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.8
Q ss_pred CCceeeeEEEEE----eCCeeEEEecccC
Q 041558 470 HRNIVKFYGFCS----HARHSFSVYESLE 494 (495)
Q Consensus 470 H~NlV~l~G~c~----~~~~~~LVyeym~ 494 (495)
|+|+|++++++. ++...++|+|||.
T Consensus 100 ~~~iv~~~~~~~~~~~~~~~~~lv~e~~~ 128 (397)
T 1wak_A 100 REMVVQLLDDFKISGVNGTHICMVFEVLG 128 (397)
T ss_dssp GGGBCCEEEEEEEEETTEEEEEEEECCCC
T ss_pred cceeeeeecceeecCCCCceEEEEEeccC
Confidence 889999999987 4567899999985
No 411
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.73 E-value=14 Score=27.00 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=39.1
Q ss_pred CcccccCCccCcCCccCCeeecccCcccccCCcccccCcccceeeccccc
Q 041558 9 NSLSGFIPLNIGNSQFLWGLDLSNNQFSSSIPLSFGNLSNLIFLYLYENS 58 (495)
Q Consensus 9 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 58 (495)
..++..-..+|.++..|+.+.+-.+ ++.+...+|.+|.+|+.+.+....
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 3455555678999999999999765 555777899999999999997653
No 412
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=64.56 E-value=4.6 Score=38.04 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=23.5
Q ss_pred cCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 469 GHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 469 ~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
.|+++|++.+++..++..++|+|||+.
T Consensus 114 ~~~~iv~~~~~~~~~~~~~lv~e~~~~ 140 (382)
T 2vx3_A 114 MKYYIVHLKRHFMFRNHLCLVFEMLSY 140 (382)
T ss_dssp GGGGBCCEEEEEEETTEEEEEEECCCC
T ss_pred cceeEEEeeeeeccCCceEEEEecCCC
Confidence 345699999999999999999999963
No 413
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=63.66 E-value=2.2 Score=39.17 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.3
Q ss_pred CCceeeeEEEEEeCCeeEEEecccC
Q 041558 470 HRNIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 470 H~NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
|+++|++++++.+.+..++|+|||.
T Consensus 76 ~~~i~~~~~~~~~~~~~~lv~e~~~ 100 (339)
T 1z57_A 76 TFRCVQMLEWFEHHGHICIVFELLG 100 (339)
T ss_dssp TTCBCCEEEEEEETTEEEEEEECCC
T ss_pred ceeeEeeecccccCCcEEEEEcCCC
Confidence 4459999999999999999999984
No 414
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=56.07 E-value=4.8 Score=37.72 Aligned_cols=30 Identities=3% Similarity=-0.102 Sum_probs=13.1
Q ss_pred ecccccCCceeeeE-------EEEEeC-----------------CeeEEEecccC
Q 041558 464 ALTETGHRNIVKFY-------GFCSHA-----------------RHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~-------G~c~~~-----------------~~~~LVyeym~ 494 (495)
.+.+ +|||+|+.+ +++... +..++|+|||+
T Consensus 118 ~l~~-~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~ 171 (371)
T 3q60_A 118 RLLG-ESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS 171 (371)
T ss_dssp HHHC-----------CBCCCCEEEEETTSCSSSBCSCC---CCEEEEEEEECCCS
T ss_pred Hhcc-cChhhhhhceeEEeeehheecCCCCCeeeccCCcccceeeeEEEEecCCC
Confidence 4555 799988744 444322 23699999986
No 415
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=55.75 E-value=4 Score=37.71 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=26.4
Q ss_pred ecccccCCc------eeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHRN------IVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~N------lV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++|++ +|++.+++...+..++|+|||+
T Consensus 69 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~ 105 (355)
T 2eu9_A 69 VLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 105 (355)
T ss_dssp HHHHHHHHCTTSCSCBCCEEEEEEETTEEEEEEECCC
T ss_pred HHHHHhhcCCCCceeEEEeeeeeeeCCeEEEEEeccC
Confidence 566666666 9999999999999999999985
No 416
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=54.86 E-value=18 Score=20.11 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 041558 418 GALFVSIALILIFFIFQKWK 437 (495)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~ 437 (495)
+.+++..++...+.+||.+|
T Consensus 15 gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 15 GLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCceeEEEcccc
Confidence 33333334444555666554
No 417
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=53.93 E-value=3.7 Score=38.35 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=22.9
Q ss_pred cccCCceeeeEEEEEeCC----eeEEEecccC
Q 041558 467 ETGHRNIVKFYGFCSHAR----HSFSVYESLE 494 (495)
Q Consensus 467 ~~~H~NlV~l~G~c~~~~----~~~LVyeym~ 494 (495)
..+|+|+|++++++...+ ..++||||+.
T Consensus 82 ~~~~~~i~~~~~~~~~~~~~~~~~~lv~e~~~ 113 (373)
T 1q8y_A 82 SMGANHILKLLDHFNHKGPNGVHVVMVFEVLG 113 (373)
T ss_dssp HHHHTTBCCCCEEEEEEETTEEEEEEEECCCC
T ss_pred ccccchHHHHHHHhhccCCCCceEEEEEecCC
Confidence 345999999999998644 6789999983
No 418
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=51.89 E-value=6.5 Score=35.13 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=26.2
Q ss_pred ecccccCCceeeeEEEEE-eCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCS-HARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~-~~~~~~LVyeym~ 494 (495)
++.+++|++.|..+++|. +++..++|+||+.
T Consensus 57 ~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~ 88 (296)
T 4hgt_A 57 IYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG 88 (296)
T ss_dssp HHHHHTTSTTCCCEEEEEEETTEEEEEEECCC
T ss_pred HHHHhcCCCCCCeeeeecCCCCceEEEEEccC
Confidence 788899999998888885 4677899999983
No 419
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=51.69 E-value=6.6 Score=35.13 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=25.9
Q ss_pred ecccccCCceeeeEEEEE-eCCeeEEEecccC
Q 041558 464 ALTETGHRNIVKFYGFCS-HARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~-~~~~~~LVyeym~ 494 (495)
++.+++|++.|+.+++|. +++..++|+||+.
T Consensus 57 ~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~ 88 (296)
T 3uzp_A 57 IYKMMQGGVGIPTIRWCGAEGDYNVMVMELLG 88 (296)
T ss_dssp HHHHHTTSTTCCCEEEEEEETTEEEEEEECCC
T ss_pred HHHHhhcCCCCCccccccCCCCceEEEEEecC
Confidence 788999999888888885 4677899999983
No 420
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=30.58 E-value=27 Score=34.04 Aligned_cols=31 Identities=13% Similarity=-0.023 Sum_probs=23.7
Q ss_pred ecccccCC-ceeeeEEEEEeCCeeEEEecccC
Q 041558 464 ALTETGHR-NIVKFYGFCSHARHSFSVYESLE 494 (495)
Q Consensus 464 ~l~~~~H~-NlV~l~G~c~~~~~~~LVyeym~ 494 (495)
++.+++|. +++.+..|+.+++..++|+|||.
T Consensus 55 il~~L~~~~~i~~i~~~~~~~~~~~lvme~~g 86 (483)
T 3sv0_A 55 IYRILQGGTGIPNVRWFGVEGDYNVLVMDLLG 86 (483)
T ss_dssp HHHHTTTSTTCCCEEEEEEETTEEEEEEECCC
T ss_pred HHHHhcCCCCCCeEEEEEeeCCEEEEEEECCC
Confidence 67777774 55566667777889999999983
No 421
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=24.19 E-value=34 Score=29.53 Aligned_cols=32 Identities=6% Similarity=0.106 Sum_probs=23.1
Q ss_pred ecccccCCce-e-eeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNI-V-KFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~Nl-V-~l~G~c~~~~~~~LVyeym~n 495 (495)
++..+++.++ | +++++...++..++|+||+++
T Consensus 66 ~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G 99 (264)
T 1nd4_A 66 RLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPG 99 (264)
T ss_dssp HHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSS
T ss_pred HHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCC
Confidence 4555555554 4 588888777778999999974
No 422
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=20.03 E-value=20 Score=32.03 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=20.5
Q ss_pred ecccccCCceeeeEEEEEeCCeeEEEecccCC
Q 041558 464 ALTETGHRNIVKFYGFCSHARHSFSVYESLEK 495 (495)
Q Consensus 464 ~l~~~~H~NlV~l~G~c~~~~~~~LVyeym~n 495 (495)
++.+++ | |++.+++. .+..++|+|||++
T Consensus 157 ~l~~l~--~-~~v~~~~~-~~~~~lvmE~~~g 184 (282)
T 1zar_A 157 ALQKLQ--G-LAVPKVYA-WEGNAVLMELIDA 184 (282)
T ss_dssp HHHHTT--T-SSSCCEEE-EETTEEEEECCCC
T ss_pred HHHhcc--C-CCcCeEEe-ccceEEEEEecCC
Confidence 677777 5 77777553 3556999999974
Done!