BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041559
         (94 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
           Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
           Homolog Osfd1
 pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
           Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
           Homolog Osfd1
 pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
           Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
           Homolog Osfd1
 pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
           Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
           Homolog Osfd1
          Length = 170

 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/98 (56%), Positives = 68/98 (69%), Gaps = 8/98 (8%)

Query: 4   RERDPLIVGRVVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRVEIGGDDLRT 63
           R+RDPL+VGRVVGDVLD F R+  +++TY +K V+NG ELKPS V +QPRVE+GG+D+RT
Sbjct: 6   RDRDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRT 65

Query: 64  FYTLVFYTVSICC--------HCFRLVTDIPATTGASF 93
           FYTLV                +   LVTDIP TT ASF
Sbjct: 66  FYTLVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASF 103


>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
 pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
 pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
 pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
          Length = 171

 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 68/101 (67%), Gaps = 8/101 (7%)

Query: 1   MSSRERDPLIVGRVVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRVEIGGDD 60
           MS   RDPLIV RVVGDVLD F R+I +++TY  ++V NG  L+PS+V N+PRVEIGG+D
Sbjct: 4   MSINIRDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGED 63

Query: 61  LRTFYTLVFYTVSICC--------HCFRLVTDIPATTGASF 93
           LR FYTLV     +          +   LVTDIPATTG +F
Sbjct: 64  LRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTF 104


>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
 pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
          Length = 180

 Score = 92.4 bits (228), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 50/101 (49%), Positives = 65/101 (64%), Gaps = 8/101 (7%)

Query: 1   MSSRERDPLIVGRVVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRVEIGGDD 60
           M +R  +PLI+GRVVGDVLD FT T  M ++Y+ K V+NG EL PS V ++PRVEI G D
Sbjct: 7   MGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGD 66

Query: 61  LRTFYTLVFYTVSICC--------HCFRLVTDIPATTGASF 93
           LR+F+TLV     +          H   +VT+IP TT A+F
Sbjct: 67  LRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATF 107


>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
 pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
          Length = 181

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 12/99 (12%)

Query: 7   DPLIVGRVVGDVLDNFTRTIPMRITYSN----KDVNNGRELKPSEVLNQPRVEIGGDDLR 62
           DPL++GRV+GDV+D+FT T+ M + Y++    K V NG EL PS V + PRVE+ G D+R
Sbjct: 8   DPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMR 67

Query: 63  TFYTLVFYTVSICC--------HCFRLVTDIPATTGASF 93
           +F+TL+     +          H   +VTDIP TT +SF
Sbjct: 68  SFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSF 106


>pdb|1HBX|G Chain G, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
 pdb|1HBX|H Chain H, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
          Length = 157

 Score = 29.6 bits (65), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 7   DPLIVGRVVGDVLD-NFTRTIPMRITYSNKDVNNGRELKPSE 47
           DP+ VGR+ GD    NF+      ++ S+KDV NG + KP +
Sbjct: 95  DPMTVGRIEGDCESLNFS-----EVSSSSKDVENGGKDKPPQ 131


>pdb|3LNN|A Chain A, Crystal Structure Of Zneb From Cupriavidus Metallidurans
 pdb|3LNN|B Chain B, Crystal Structure Of Zneb From Cupriavidus Metallidurans
          Length = 359

 Score = 28.9 bits (63), Expect = 0.82,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 13/70 (18%)

Query: 13  RVVGDVLDNFTRTIPMRITYSNKDVNNGRELKP-----SEVLNQPR----VEIGGDDLRT 63
           R VG +LD  TRT  +R+ + N D   GR L+P     +  L+QP     V +       
Sbjct: 244 RYVGQILDADTRTTKVRMVFDNPD---GR-LRPGMFAQATFLSQPHEGIVVPMSAIVQSG 299

Query: 64  FYTLVFYTVS 73
           FYT  F  V+
Sbjct: 300 FYTRAFVEVA 309


>pdb|4H0A|A Chain A, Crystal Structure Of A Hypothetical Protein (Sav1118) From
           Staphylococcus Aureus Subsp. Aureus Mu50 At 1.90 A
           Resolution
 pdb|4H0A|B Chain B, Crystal Structure Of A Hypothetical Protein (Sav1118) From
           Staphylococcus Aureus Subsp. Aureus Mu50 At 1.90 A
           Resolution
          Length = 323

 Score = 27.3 bits (59), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 6/39 (15%)

Query: 31  TYSNKDVNNGRELKPSEVLNQPRVEIGGDDLRTFYTLVF 69
           ++ N D++  R      +LN    E GGD  R +Y+L+F
Sbjct: 288 SWXNSDIHRSR------LLNSKYDEXGGDVXRDYYSLIF 320


>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
          Length = 179

 Score = 26.2 bits (56), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 22/45 (48%)

Query: 14 VVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRVEIGG 58
          +V DVLD         I   + +V  G EL P++V +QP V   G
Sbjct: 4  IVPDVLDAVPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSG 48


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.140    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,716,478
Number of Sequences: 62578
Number of extensions: 98649
Number of successful extensions: 177
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 8
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)