BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041559
(94 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93WI9|HD3A_ORYSJ Protein HEADING DATE 3A OS=Oryza sativa subsp. japonica GN=HD3A
PE=1 SV=1
Length = 179
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/100 (56%), Positives = 69/100 (69%), Gaps = 8/100 (8%)
Query: 2 SSRERDPLIVGRVVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRVEIGGDDL 61
S R+RDPL+VGRVVGDVLD F R+ +++TY +K V+NG ELKPS V +QPRVE+GG+D+
Sbjct: 4 SGRDRDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGCELKPSMVTHQPRVEVGGNDM 63
Query: 62 RTFYTLVFYTVSICC--------HCFRLVTDIPATTGASF 93
RTFYTLV + LVTDIP TT ASF
Sbjct: 64 RTFYTLVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASF 103
>sp|Q9SXZ2|FT_ARATH Protein FLOWERING LOCUS T OS=Arabidopsis thaliana GN=FT PE=1 SV=2
Length = 175
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 69/101 (68%), Gaps = 8/101 (7%)
Query: 1 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRVEIGGDD 60
MS RDPLIV RVVGDVLD F R+I +++TY ++V NG +L+PS+V N+PRVEIGG+D
Sbjct: 1 MSINIRDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLDLRPSQVQNKPRVEIGGED 60
Query: 61 LRTFYTLVFYTVSICC--------HCFRLVTDIPATTGASF 93
LR FYTLV + + LVTDIPATTG +F
Sbjct: 61 LRNFYTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTF 101
>sp|Q9S7R5|TSF_ARATH Protein TWIN SISTER of FT OS=Arabidopsis thaliana GN=TSF PE=2 SV=1
Length = 175
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 69/101 (68%), Gaps = 8/101 (7%)
Query: 1 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRVEIGGDD 60
MS RDPL+VG VVGDVLD FTR + +++TY +++V NG +L+PS+VLN+P VEIGGDD
Sbjct: 1 MSLSRRDPLVVGSVVGDVLDPFTRLVSLKVTYGHREVTNGLDLRPSQVLNKPIVEIGGDD 60
Query: 61 LRTFYTLVFYTVSICC--------HCFRLVTDIPATTGASF 93
R FYTLV + + LVTDIPATTG +F
Sbjct: 61 FRNFYTLVMVDPDVPSPSNPHQREYLHWLVTDIPATTGNAF 101
>sp|Q9FIT4|BFT_ARATH Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana GN=BFT PE=3
SV=1
Length = 177
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 67/100 (67%), Gaps = 9/100 (9%)
Query: 3 SRERDPLIVGRVVGDVLDNFTRTIPMRITY-SNKDVNNGRELKPSEVLNQPRVEIGGDDL 61
SRE +PLIVGRV+GDVL+ F ++ MR+T+ SN V+NG EL PS +L++PRVEIGG DL
Sbjct: 2 SREIEPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQDL 61
Query: 62 RTFYTLVFYTVSICC--------HCFRLVTDIPATTGASF 93
R+F+TL+ + +VTDIP TT ASF
Sbjct: 62 RSFFTLIMMDPDAPSPSNPYMREYLHWMVTDIPGTTDASF 101
>sp|Q8VWH2|HD3B_ORYSJ Protein HEADING DATE 3B OS=Oryza sativa subsp. japonica GN=HD3B
PE=2 SV=1
Length = 178
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 63/95 (66%), Gaps = 8/95 (8%)
Query: 7 DPLIVGRVVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRVEIGGDDLRTFYT 66
DPL+VGR+VGDVLD F R + ++Y + V+NG ELKPS V QPRV +GG+D+RTFYT
Sbjct: 8 DPLVVGRIVGDVLDPFVRITNLSVSYGARIVSNGCELKPSMVTQQPRVVVGGNDMRTFYT 67
Query: 67 LVFY--------TVSICCHCFRLVTDIPATTGASF 93
LV ++ + LVTDIP TTGA+F
Sbjct: 68 LVMVDPDAPSPSNPNLREYLHWLVTDIPGTTGATF 102
>sp|P93003|TFL1_ARATH Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana GN=TFL1 PE=1 SV=1
Length = 177
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/101 (49%), Positives = 65/101 (64%), Gaps = 8/101 (7%)
Query: 1 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRVEIGGDD 60
M +R +PLI+GRVVGDVLD FT T M ++Y+ K V+NG EL PS V ++PRVEI G D
Sbjct: 4 MGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGD 63
Query: 61 LRTFYTLVFYTVSICC--------HCFRLVTDIPATTGASF 93
LR+F+TLV + H +VT+IP TT A+F
Sbjct: 64 LRSFFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATF 104
>sp|Q9XH42|CET4_TOBAC CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1
Length = 175
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 65/102 (63%), Gaps = 9/102 (8%)
Query: 1 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITY-SNKDVNNGRELKPSEVLNQPRVEIGGD 59
M S+ DPL++GRV+G+V+D FT ++ M +TY S+K V NG EL PS V ++PRVE+ G
Sbjct: 1 MGSKMSDPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGG 60
Query: 60 DLRTFYTLVFYTVSICC--------HCFRLVTDIPATTGASF 93
DLR+F+TL+ + H +VTDIP TT SF
Sbjct: 61 DLRSFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSF 102
>sp|Q9XH43|CET2_TOBAC CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1
Length = 175
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 9/102 (8%)
Query: 1 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITY-SNKDVNNGRELKPSEVLNQPRVEIGGD 59
M S+ DPL++GRV+G+V+D FT ++ M +TY S+K V NG EL PS V ++PRVE+ G
Sbjct: 1 MGSKMSDPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGG 60
Query: 60 DLRTFYTLVFYTVSICC--------HCFRLVTDIPATTGASF 93
DLR+F+T++ + H +VTDIP TT SF
Sbjct: 61 DLRSFFTMIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSF 102
>sp|Q41261|CEN_ANTMA Protein CENTRORADIALIS OS=Antirrhinum majus GN=CEN PE=1 SV=1
Length = 181
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 12/99 (12%)
Query: 7 DPLIVGRVVGDVLDNFTRTIPMRITYSN----KDVNNGRELKPSEVLNQPRVEIGGDDLR 62
DPL++GRV+GDV+D+FT T+ M + Y++ K V NG EL PS V + PRVE+ G D+R
Sbjct: 8 DPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMR 67
Query: 63 TFYTLVFYTVSICC--------HCFRLVTDIPATTGASF 93
+F+TL+ + H +VTDIP TT +SF
Sbjct: 68 SFFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSF 106
>sp|Q9ZNV5|CEN_ARATH Protein CENTRORADIALIS-like OS=Arabidopsis thaliana GN=CEN PE=2
SV=1
Length = 175
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 62/102 (60%), Gaps = 9/102 (8%)
Query: 1 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITY-SNKDVNNGRELKPSEVLNQPRVEIGGD 59
M+ DPL+VGRV+GDV+DN + + M +TY S+K V NG EL PS V +P+VE+ G
Sbjct: 1 MARISSDPLMVGRVIGDVVDNCLQAVKMTVTYNSDKQVYNGHELFPSVVTYKPKVEVHGG 60
Query: 60 DLRTFYTLVFYTVSICC--------HCFRLVTDIPATTGASF 93
D+R+F+TLV + H +VTDIP TT SF
Sbjct: 61 DMRSFFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDVSF 102
>sp|O82088|SELFP_SOLLC Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP PE=2 SV=1
Length = 175
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 63/102 (61%), Gaps = 9/102 (8%)
Query: 1 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITYSN-KDVNNGRELKPSEVLNQPRVEIGGD 59
M+S+ +PL++GRV+G+V+D F ++ M + Y+N K V NG E PS V ++PRVE+ G
Sbjct: 1 MASKMCEPLVIGRVIGEVVDYFCPSVKMSVVYNNNKHVYNGHEFFPSSVTSKPRVEVHGG 60
Query: 60 DLRTFYTLVFYTVSICC--------HCFRLVTDIPATTGASF 93
DLR+F+TL+ + H +VTDIP TT SF
Sbjct: 61 DLRSFFTLIMIDPDVPGPSDPYLREHLHWIVTDIPGTTDCSF 102
>sp|Q9XH44|CET1_TOBAC CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1
Length = 174
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 65/102 (63%), Gaps = 9/102 (8%)
Query: 1 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITYS-NKDVNNGRELKPSEVLNQPRVEIGGD 59
M+SR +PL+V RV+G+V+D+F ++ + + Y+ +K V NG EL P+ + +PRVEIGG+
Sbjct: 1 MASRVVEPLVVARVIGEVVDSFNPSVKLNVIYNGSKQVFNGHELMPAVIAAKPRVEIGGE 60
Query: 60 DLRTFYTLVFYTVSICC--------HCFRLVTDIPATTGASF 93
D+R+ YTL+ + H +VTDIP +T +SF
Sbjct: 61 DMRSAYTLIMTDPDVPGPSDPYLREHLHWIVTDIPGSTDSSF 102
>sp|Q9XFK7|MFT_ARATH Protein MOTHER of FT and TF 1 OS=Arabidopsis thaliana GN=MFT PE=1
SV=1
Length = 173
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 7 DPLIVGRVVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRVEIGGDDLRTFYT 66
DPL+VGRV+GDVLD F T M + + K + NG E+KPS +N P+V I G YT
Sbjct: 6 DPLVVGRVIGDVLDMFIPTANMSVYFGPKHITNGCEIKPSTAVNPPKVNISGHS-DELYT 64
Query: 67 LVF 69
LV
Sbjct: 65 LVM 67
>sp|P54185|OBA5_DROME Putative odorant-binding protein A5 OS=Drosophila melanogaster
GN=a5 PE=2 SV=2
Length = 210
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 13 RVVGDVLDNFTRTIPMRITYSNK-DVNNGRELKPSEVLNQPRVEIGGDDLRTFYTLVFYT 71
V+ ++LD R + +RI Y N D+ G+ P+E+ QPR++ D FYT
Sbjct: 34 EVIPEILDEPPREL-LRIKYDNTIDIEEGKTYTPTELKFQPRLDWNAD------PESFYT 86
Query: 72 VSICC 76
V + C
Sbjct: 87 VLMIC 91
>sp|P31729|OV16_ONCVO OV-16 antigen OS=Onchocerca volvulus GN=OV16 PE=2 SV=2
Length = 197
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 28 MRITYSNKDVNNGRELKPSEVLNQPRVEIGGDDLRTFYTLVF 69
+ ++Y+N VN G EL P++V NQP + YTLV
Sbjct: 55 VNVSYNNLTVNLGNELTPTQVKNQPTKVSWDAEPGALYTLVM 96
>sp|P54186|D1_ONCVO Protein D1 (Fragment) OS=Onchocerca volvulus GN=D1 PE=2 SV=1
Length = 152
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 28 MRITYSNKDVNNGRELKPSEVLNQPRVEIGGDDLRTFYTLVF 69
+ ++Y+N VN G EL P++V NQP + YTLV
Sbjct: 10 VNVSYNNLTVNLGNELTPTQVKNQPTKVSWDAEPGALYTLVM 51
>sp|P28324|ELK4_HUMAN ETS domain-containing protein Elk-4 OS=Homo sapiens GN=ELK4 PE=1
SV=3
Length = 431
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 7 DPLIVGRVVGDVLD-NFTRTIPMRITYSNKDVNNGRELKPSE 47
DP+ VGR+ GD NF+ ++ S+KDV NG + KP +
Sbjct: 94 DPMTVGRIEGDCESLNFS-----EVSSSSKDVENGGKDKPPQ 130
>sp|Q7NC17|DXR_MYCGA 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Mycoplasma
gallisepticum (strain R(low / passage 15 / clone 2))
GN=dxr PE=3 SV=1
Length = 368
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 32 YSNKDVNNGRELKPSEVLNQPRVEIGGD---DLRTFYTLVFYTVSICCHCFRLVTDIPAT 88
Y NKD++ R+L +++LN P ++G + + TF V+ V H F++ IP
Sbjct: 162 YFNKDISELRKLTYNDLLNHPNWKMGAEISINSATFVNKVYEIVE-AYHLFKIKDIIPVV 220
Query: 89 TGAS 92
+S
Sbjct: 221 ERSS 224
>sp|Q7L0X2|F194A_HUMAN Protein FAM194A OS=Homo sapiens GN=FAM194A PE=2 SV=1
Length = 663
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 27 PMRITYSNKDVNNGRELKPSEVLNQPRVEIGGDDLRTFYTLVFYTV-----SICCHCFRL 81
P + Y + N G K E P+ E G DLR F++ V + + CC F+
Sbjct: 244 PSILAYKEESSNLGINFKDEEEETSPKCEFCGSDLRAFFSNVDVSSEPKGHASCCIAFQN 303
Query: 82 VTD 84
+ D
Sbjct: 304 LID 306
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,517,799
Number of Sequences: 539616
Number of extensions: 1278772
Number of successful extensions: 2451
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2415
Number of HSP's gapped (non-prelim): 19
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)