Query 041559
Match_columns 94
No_of_seqs 117 out of 742
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 14:08:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041559.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041559hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wko_A Terminal flower 1 prote 100.0 1.3E-28 4.4E-33 172.7 7.3 90 1-90 7-104 (180)
2 3axy_A Protein heading DATE 3A 99.9 3.9E-28 1.3E-32 168.9 7.9 88 1-90 5-100 (170)
3 2gzq_A Phosphatidylethanolamin 99.9 1.2E-25 4.1E-30 159.9 5.6 87 3-89 12-111 (200)
4 2iqy_A Phosphatidylethanolamin 99.9 2.4E-24 8E-29 152.1 8.2 87 2-89 1-99 (190)
5 1wpx_B Carboxypeptidase Y inhi 99.9 2E-24 6.7E-29 154.9 2.7 86 3-88 10-121 (220)
6 2jyz_A CG7054-PA, GH14779P, PE 99.9 6.9E-23 2.4E-27 143.2 6.4 77 12-89 2-88 (179)
7 1fux_A Hypothetical 19.5 kDa p 99.2 1.1E-11 3.7E-16 85.7 6.1 55 34-88 7-74 (166)
8 1fjj_A Hypothetical 17.1 kDa p 99.0 6.9E-10 2.3E-14 76.1 6.4 39 50-88 31-73 (159)
9 3n08_A Putative phosphatidylet 98.8 7.4E-09 2.5E-13 70.7 6.7 53 36-88 10-74 (153)
10 2evv_A Hypothetical protein HP 98.7 1.7E-08 5.8E-13 72.0 4.1 49 40-88 47-102 (207)
11 1ffk_I Ribosomal protein L15E; 28.3 27 0.00092 24.3 1.7 21 63-83 127-152 (194)
12 3jyw_L 60S ribosomal protein L 22.2 41 0.0014 23.4 1.7 11 62-72 126-136 (192)
13 4a18_P RPL38, ribosomal protei 21.9 75 0.0026 19.4 2.7 20 53-72 39-58 (89)
14 4a17_L RPL15, ribosomal protei 21.1 45 0.0015 23.4 1.8 10 63-72 128-137 (204)
15 3j21_M 50S ribosomal protein L 20.8 45 0.0015 23.2 1.7 10 63-72 126-135 (194)
No 1
>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein; 1.80A {Arabidopsis thaliana} PDB: 1qou_A
Probab=99.95 E-value=1.3e-28 Score=172.65 Aligned_cols=90 Identities=53% Similarity=0.817 Sum_probs=82.2
Q ss_pred CCCcCCCCceeCCeecccCCCCCCCeeEEEEeCCcccCCCceeCCccCCCCCeEEEecCCCCceEEEEEECC--------
Q 041559 1 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRVEIGGDDLRTFYTLVFYTV-------- 72 (94)
Q Consensus 1 ~~~~~~~~l~~~~IiPdvl~~f~P~~~L~V~y~~~~V~~G~~l~p~~~~~~P~V~~~~~~~~~lyTLvMvDP-------- 72 (94)
|+.+++++|+.++||||||+.|.|+..|+|.|++..|.+|+.|+++++..+|+|+|.+.+.+++|||+|+||
T Consensus 7 ~~~~~~~~l~~~~vipdvl~~f~P~~~l~V~y~s~~v~~G~~l~~~~~~~~P~l~~~~~~~~~~ytlvm~DPDaP~~~~p 86 (180)
T 1wko_A 7 MGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGPSDP 86 (180)
T ss_dssp ---CTTHHHHHTTHHHHTBCCCCCCSEEEEEETTEECCTTCBCCGGGGSSCCEEEEESSCTTCEEEEEEEECSCSBTTBC
T ss_pred HHHHHHHHHHhCCCCCCccCCcCCCeeEEEEECCeEcCCCCCcCHHHhCcCCeEEEecCCCCceEEEEEeCCCCCCCccC
Confidence 556899999999999999999999999999999999999999999999999999999976678999999999
Q ss_pred CCCeEEEEEEeCcCCCCC
Q 041559 73 SICCHCFRLVTDIPATTG 90 (94)
Q Consensus 73 ~~~e~~HWlv~NIp~~~~ 90 (94)
++++|+|||++|||++..
T Consensus 87 ~~~~~~HWlv~nIp~~~~ 104 (180)
T 1wko_A 87 FLKEHLHWIVTNIPGTTD 104 (180)
T ss_dssp TTCCEEEEEEEEEETTSB
T ss_pred CCccEEEEEEeccCcCcc
Confidence 467999999999999864
No 2
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein, 14-3-3 protein, BZ protein, floral induction; HET: SEP; 2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Probab=99.95 E-value=3.9e-28 Score=168.90 Aligned_cols=88 Identities=59% Similarity=0.942 Sum_probs=81.9
Q ss_pred CCCcCCCCceeCCeecccCCCCCCCeeEEEEeCCcccCCCceeCCccCCCCCeEEEecCCCCceEEEEEECC--------
Q 041559 1 MSSRERDPLIVGRVVGDVLDNFTRTIPMRITYSNKDVNNGRELKPSEVLNQPRVEIGGDDLRTFYTLVFYTV-------- 72 (94)
Q Consensus 1 ~~~~~~~~l~~~~IiPdvl~~f~P~~~L~V~y~~~~V~~G~~l~p~~~~~~P~V~~~~~~~~~lyTLvMvDP-------- 72 (94)
|| .|++|++++||||||+.|.|+..|+|.|++..|.+|++|+++++..+|+|+|++.+.+++|||+|+||
T Consensus 5 m~--~~~~l~~~~vipdvl~~F~P~~~l~v~y~s~~v~~G~~l~~~~~~~~P~l~~~~~~~~~~ytlvm~DpDaP~~~~p 82 (170)
T 3axy_A 5 MR--DRDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVMVDPDAPSPSDP 82 (170)
T ss_dssp CC--TTCHHHHTTHHHHTBCCCCCCSCEEEEETTEECCTTEECCGGGSSSCCEEEECCSCTTCEEEEEEEETTCSCTTSC
T ss_pred cc--hhchhhhCCccccccCCcCCceEEEEEECCeEcCCCCEeCHHHhCcCCeEEEeCCCCCcEEEEEEECCCCCCCccC
Confidence 76 38999999999999999999999999999999999999999999999999999876689999999999
Q ss_pred CCCeEEEEEEeCcCCCCC
Q 041559 73 SICCHCFRLVTDIPATTG 90 (94)
Q Consensus 73 ~~~e~~HWlv~NIp~~~~ 90 (94)
++++|+|||++|||++..
T Consensus 83 ~~~~~~HWlv~nIp~~~~ 100 (170)
T 3axy_A 83 NLREYLHWLVTDIPGTTA 100 (170)
T ss_dssp TTCSEEEEEEEEEETTSB
T ss_pred CCccEEEEEEeCCCCCcc
Confidence 457999999999999854
No 3
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.30A {Plasmodium vivax} PDB: 2r77_A
Probab=99.92 E-value=1.2e-25 Score=159.86 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=78.4
Q ss_pred CcCCCCceeCCeecccCC--CCCCCeeEEEEeC-CcccCCCceeCCccCCCCCe-EEEecCCC-CceEEEEEECC-----
Q 041559 3 SRERDPLIVGRVVGDVLD--NFTRTIPMRITYS-NKDVNNGRELKPSEVLNQPR-VEIGGDDL-RTFYTLVFYTV----- 72 (94)
Q Consensus 3 ~~~~~~l~~~~IiPdvl~--~f~P~~~L~V~y~-~~~V~~G~~l~p~~~~~~P~-V~~~~~~~-~~lyTLvMvDP----- 72 (94)
++++++|++++||||||+ .|.|++.|+|.|+ +..|.+|++|+++++..+|+ |+|++.+. .++|||+|+||
T Consensus 12 ~~~~~~l~~~~IipDvl~~~~f~p~~~L~V~y~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~~~~~ytLvm~DPDaP~~ 91 (200)
T 2gzq_A 12 PPTIEELKREKIIPHVFPDENVDLTVDMYISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFMIDPDFPSR 91 (200)
T ss_dssp SCCHHHHHHTTHHHHTSSSSCCCCCCCEEEEEETTEEECSSCEEESTTCSSCCSEEEESSCCCTTEEEEEEEEETTCSCS
T ss_pred HHHHHHHHhCCccCcccCCCCCcceeEEEEEECCCcccCCCCEeCHHHHhCCCceEEEccCCCCCceEEEEEECCCCCCC
Confidence 457889999999999995 4999999999996 78999999999999999998 99998643 68999999999
Q ss_pred ---CCCeEEEEEEeCcCCCC
Q 041559 73 ---SICCHCFRLVTDIPATT 89 (94)
Q Consensus 73 ---~~~e~~HWlv~NIp~~~ 89 (94)
++++|||||++|||++.
T Consensus 92 ~~~~~~~~~HWlv~nIp~~~ 111 (200)
T 2gzq_A 92 RRPDGRDYVHWAVSGIKSKE 111 (200)
T ss_dssp SCCTTCSEEEEEEEEECSSE
T ss_pred CCCCCCCEEEEEEeCCCcCc
Confidence 36899999999999863
No 4
>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A* 1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A
Probab=99.91 E-value=2.4e-24 Score=152.06 Aligned_cols=87 Identities=22% Similarity=0.311 Sum_probs=79.6
Q ss_pred CCcCCCCcee--CCeecccCCCCCCCeeEEEEe-CCcccCCCceeCCccCCCCCe-EEEecCCCCceEEEEEECC-----
Q 041559 2 SSRERDPLIV--GRVVGDVLDNFTRTIPMRITY-SNKDVNNGRELKPSEVLNQPR-VEIGGDDLRTFYTLVFYTV----- 72 (94)
Q Consensus 2 ~~~~~~~l~~--~~IiPdvl~~f~P~~~L~V~y-~~~~V~~G~~l~p~~~~~~P~-V~~~~~~~~~lyTLvMvDP----- 72 (94)
|++..++|++ ++||||||+. .|+..|+|.| ++..|.+|+.|+++++...|+ |+|.+.+.+++|||+|+||
T Consensus 1 ~~~~~~~~~~~~~~vipdvl~~-~p~~~l~v~~~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~~~~ytlvm~DpDaP~~ 79 (190)
T 2iqy_A 1 SNAMAADISQWAGPLSLQEVDE-PPQHALRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSR 79 (190)
T ss_dssp CCCSSCCGGGTTSTTCGGGTSS-CCSEECEEECSSCBCCSTTEECCGGGGSSCCSEEECTTCCTTSEEEEEEEESSSSCS
T ss_pred ChHHHHHHHHhcCccCCcCcCC-CCCceEEEEECCCcccCCCCEECHHHHhCCCceEEEccCCCCCEEEEEEECCCCCCC
Confidence 5678899999 9999999998 9999999999 567899999999999999999 9999875579999999999
Q ss_pred ---CCCeEEEEEEeCcCCCC
Q 041559 73 ---SICCHCFRLVTDIPATT 89 (94)
Q Consensus 73 ---~~~e~~HWlv~NIp~~~ 89 (94)
++++|+|||++|||+++
T Consensus 80 ~~p~~~~~~HWlv~nIp~~~ 99 (190)
T 2iqy_A 80 KDPKFREWHHFLVVNMKGND 99 (190)
T ss_dssp SSCTTCCEEEEEEEEEETTB
T ss_pred CCCCcCCEEEEEEeCCChhc
Confidence 46799999999999873
No 5
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine proteinase inhibitor, Pro inhibitor complex; HET: NAG NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Probab=99.89 E-value=2e-24 Score=154.88 Aligned_cols=86 Identities=17% Similarity=0.263 Sum_probs=76.3
Q ss_pred CcCCCCceeCCeecccCCC--CCCCeeEEEEeCC-cccCCCceeCCccCCCCCeEEEec----------C-----CCCce
Q 041559 3 SRERDPLIVGRVVGDVLDN--FTRTIPMRITYSN-KDVNNGRELKPSEVLNQPRVEIGG----------D-----DLRTF 64 (94)
Q Consensus 3 ~~~~~~l~~~~IiPdvl~~--f~P~~~L~V~y~~-~~V~~G~~l~p~~~~~~P~V~~~~----------~-----~~~~l 64 (94)
++++++|++++||||||+. |.|+..|+|.|++ ..|.+|+.|+++++..+|+|++.. . +..+.
T Consensus 10 ~~~~~~l~~~~IipDvl~~~~F~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~v~~~~~~~~~~~~~~~~~~~p~~~~~ 89 (220)
T 1wpx_B 10 QASIDSYKKHGILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDL 89 (220)
T ss_dssp HHHHHHHHHTTHHHHTSCCTTCCCSEEEEEEEETTEEECSSCBCCGGGGSSCCEEEEEEETTCC------CCCCCCSSCC
T ss_pred HHHHHHHHhCCCCccccCCcCCCCceEEEEEECCCcEeCCCCCcCHHHhcCCCeeEeCCCCCcccccccccccCCCCCce
Confidence 3567899999999999999 9999999999965 679999999999999999999982 1 24689
Q ss_pred EEEEEECC--------CCCeEEEEEEeCcCCC
Q 041559 65 YTLVFYTV--------SICCHCFRLVTDIPAT 88 (94)
Q Consensus 65 yTLvMvDP--------~~~e~~HWlv~NIp~~ 88 (94)
|||+|+|| ++++|+||+++|||++
T Consensus 90 ~~lvm~DpDaP~~~~p~~~~~~HW~v~nIp~~ 121 (220)
T 1wpx_B 90 FTLVMTDPDAPSKTDHKWSEFCHLVECDLKLL 121 (220)
T ss_dssp EEEEEEESSSSCSSCCTTCSEEEEEEEEEEEC
T ss_pred EEEEEECCCCCCCCCCCcCcEEEEEEEccCCC
Confidence 99999999 3579999999999986
No 6
>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical shift variations, titration, unknown function; NMR {Drosophila melanogaster}
Probab=99.87 E-value=6.9e-23 Score=143.22 Aligned_cols=77 Identities=27% Similarity=0.428 Sum_probs=70.3
Q ss_pred CCeecccCCCCCCCeeEEEEeC-CcccCCCceeCCccCCCCCeEEEecCCCC-ceEEEEEECC--------CCCeEEEEE
Q 041559 12 GRVVGDVLDNFTRTIPMRITYS-NKDVNNGRELKPSEVLNQPRVEIGGDDLR-TFYTLVFYTV--------SICCHCFRL 81 (94)
Q Consensus 12 ~~IiPdvl~~f~P~~~L~V~y~-~~~V~~G~~l~p~~~~~~P~V~~~~~~~~-~lyTLvMvDP--------~~~e~~HWl 81 (94)
++||||||+. .|+..|+|.|+ +..|.+|+.|+++++..+|+|+|.+.+.+ ++|||+|+|| ++++|+|||
T Consensus 2 ~~vipdvl~~-~P~~~l~V~y~~~~~v~~G~~l~~~~~~~~P~l~~~~~p~~t~~ytlvm~DpDaP~~~~p~~~~~~HWl 80 (179)
T 2jyz_A 2 DDIVPDVLDA-VPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVDPDAPTRQDPKYREILHWS 80 (179)
T ss_dssp CCBTTTTBSS-CCSEECEEESSSSCCBCTTEECCSSCTTSCCEEECTTTCCSCSEEEEEEECCCSSCTTCCSSCCCSCCE
T ss_pred CcccCcCcCC-CCcCeEEEEECCCcccCCCCEeCHHHhccCCeEEEeCCCCCceeEEEEEeCCCCCCCccCCCccEEEEE
Confidence 7899999999 99999999996 58899999999999999999999986444 8999999999 357999999
Q ss_pred EeCcCCCC
Q 041559 82 VTDIPATT 89 (94)
Q Consensus 82 v~NIp~~~ 89 (94)
++|||++.
T Consensus 81 v~nIp~~~ 88 (179)
T 2jyz_A 81 VVNIPGSN 88 (179)
T ss_dssp EECCCTTS
T ss_pred EECCCCCc
Confidence 99999873
No 7
>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta protein, unknown function; 1.81A {Escherichia coli} SCOP: b.17.1.2
Probab=99.24 E-value=1.1e-11 Score=85.71 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=47.1
Q ss_pred CcccCCCceeCCccCCC---------CCeEEEecCC-CCceEEEEEECC---CCCeEEEEEEeCcCCC
Q 041559 34 NKDVNNGRELKPSEVLN---------QPRVEIGGDD-LRTFYTLVFYTV---SICCHCFRLVTDIPAT 88 (94)
Q Consensus 34 ~~~V~~G~~l~p~~~~~---------~P~V~~~~~~-~~~lyTLvMvDP---~~~e~~HWlv~NIp~~ 88 (94)
+..+..|+.|+++++.. .|.|+|.+.. ..+.|+|+|+|| +.++|+||++.|||++
T Consensus 7 S~~~~~g~~ip~~~~~~~~~~~G~n~sP~l~w~~~P~~t~s~ali~~DPDAP~~~~~~HW~v~nIp~~ 74 (166)
T 1fux_A 7 SNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPAT 74 (166)
T ss_dssp CSSCCTTSBCCGGGBCEETTEECCCCCCCEEEECCCTTCCEEEEEEEETTSTTTTCEEEEEEEEEETT
T ss_pred ccCcCCcCCCCHHHhccccccCCCCcCCeEEEeCCCCCCeEEEEEEECCCCCCCCcEEEeEEeCcCCC
Confidence 45788999999988766 8999999863 358999999999 5579999999999976
No 8
>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB family, lipid binding protein; HET: MSE EPE; 1.66A {Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*
Probab=99.00 E-value=6.9e-10 Score=76.13 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=33.3
Q ss_pred CCCeEEEecC-CCCceEEEEEECC---CCCeEEEEEEeCcCCC
Q 041559 50 NQPRVEIGGD-DLRTFYTLVFYTV---SICCHCFRLVTDIPAT 88 (94)
Q Consensus 50 ~~P~V~~~~~-~~~~lyTLvMvDP---~~~e~~HWlv~NIp~~ 88 (94)
..|.|+|++. +..+.|+|+|+|| +.++|+||+|.|||++
T Consensus 31 ~sP~l~w~~~P~~t~s~ali~~DPDAP~~~~~~HW~v~nIp~~ 73 (159)
T 1fjj_A 31 ISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPAD 73 (159)
T ss_dssp CCCCEEEECCCTTCCEEEEEEEETTSTTTTCEEEEEEEEEETT
T ss_pred cCCeEEEcCCCCCCeEEEEEEECCCCCCCCcEEEEEEEccCCC
Confidence 4688999986 3458999999999 5578999999999986
No 9
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic homolog RAF kinase inhibitor protein (RKIP). csgid structural genomics; 1.25A {Chlamydia trachomatis} SCOP: b.17.1.0
Probab=98.84 E-value=7.4e-09 Score=70.72 Aligned_cols=53 Identities=9% Similarity=0.029 Sum_probs=39.6
Q ss_pred ccCCCceeCCccC----CCCCeEEEecCCC-CceEEEEEECC-------CCCeEEEEEEeCcCCC
Q 041559 36 DVNNGRELKPSEV----LNQPRVEIGGDDL-RTFYTLVFYTV-------SICCHCFRLVTDIPAT 88 (94)
Q Consensus 36 ~V~~G~~l~p~~~----~~~P~V~~~~~~~-~~lyTLvMvDP-------~~~e~~HWlv~NIp~~ 88 (94)
.+..|..|....+ ...|.++|++... .+.|+|+|+|| ..++|+||++.|||++
T Consensus 10 ~f~~g~~ip~~~t~~G~n~SP~l~w~~~P~~tks~ali~~DpDAPs~~~~~~~~~HWvv~nIp~~ 74 (153)
T 3n08_A 10 AFSYGRPIPKKYSCQGVGISPPLSFSDVPREAKSLVLIVEDPDVPPSVREDGLWIHWIVYNLSPV 74 (153)
T ss_dssp TBCTTEECCGGGSTTSCCCCCCEEEECCCTTCCEEEEEEEETTSCTTTCTTSCEEEEEEEEECTT
T ss_pred CcCCCCCCCHHHcCCCCCcCcEEEEcCCCCCCeEEEEEEECCCCCCccCCCCcEEEEEEEcCCCC
Confidence 4455555544332 3468899998643 47999999999 2679999999999985
No 10
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer, structural genomics, PSI, prote structure initiative; HET: MSE; 2.59A {Helicobacter pylori}
Probab=98.65 E-value=1.7e-08 Score=72.00 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=36.1
Q ss_pred CceeCCc--cCCCCCeEEEecCCCCceEEEEEECC-----CCCeEEEEEEeCcCCC
Q 041559 40 GRELKPS--EVLNQPRVEIGGDDLRTFYTLVFYTV-----SICCHCFRLVTDIPAT 88 (94)
Q Consensus 40 G~~l~p~--~~~~~P~V~~~~~~~~~lyTLvMvDP-----~~~e~~HWlv~NIp~~ 88 (94)
|..++|. .-...|.|+|++.+..+.|+|+|+|| ..++|+||+|.||+..
T Consensus 47 G~~~sP~~~~p~~Sp~L~W~~~~gtks~aLvm~DPDAP~~~g~~~~HWvv~NI~~~ 102 (207)
T 2evv_A 47 PKAFLNSNGLPTYSPKISWQKVEGAQSYALELIDHDAQKVCGMPFVHWVVGNIAHN 102 (207)
T ss_dssp CGGGBCTTSCBCCCCCEEECCCTTCSEEEEEEEETTHHHHHSSCEEEEEEEEECSS
T ss_pred CCCcCCccCCCCccceEEEecCCCCeEEEEEEECCCCCCCCCCcEEEEEEeCCCCC
Confidence 5555552 12234569998775568999999999 4578999999999543
No 11
>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2
Probab=28.31 E-value=27 Score=24.33 Aligned_cols=21 Identities=0% Similarity=0.009 Sum_probs=16.0
Q ss_pred ceEEEEEECC-----CCCeEEEEEEe
Q 041559 63 TFYTLVFYTV-----SICCHCFRLVT 83 (94)
Q Consensus 63 ~lyTLvMvDP-----~~~e~~HWlv~ 83 (94)
++|-+||||| ....-+.|+..
T Consensus 127 K~yEVILVDp~H~aIr~Dp~~nWI~~ 152 (194)
T 1ffk_I 127 KWFEVILVDRDHPAIKSDPQLSWVSR 152 (194)
T ss_pred eEEEEEEEcCCcHhhhcCcccccccc
Confidence 5899999999 44556677654
No 12
>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L
Probab=22.23 E-value=41 Score=23.38 Aligned_cols=11 Identities=0% Similarity=0.377 Sum_probs=10.0
Q ss_pred CceEEEEEECC
Q 041559 62 RTFYTLVFYTV 72 (94)
Q Consensus 62 ~~lyTLvMvDP 72 (94)
-++|-+|||||
T Consensus 126 yK~fEVILVDp 136 (192)
T 3jyw_L 126 YKYFEVILVDP 136 (192)
T ss_dssp CEEEEEEEECS
T ss_pred cceEEEEEecC
Confidence 47999999999
No 13
>4a18_P RPL38, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_P 4a1b_P 4a1d_P
Probab=21.85 E-value=75 Score=19.38 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=14.0
Q ss_pred eEEEecCCCCceEEEEEECC
Q 041559 53 RVEIGGDDLRTFYTLVFYTV 72 (94)
Q Consensus 53 ~V~~~~~~~~~lyTLvMvDP 72 (94)
.+.|...-..-||||++.|+
T Consensus 39 ~tKFKvRcsryLYTLvv~D~ 58 (89)
T 4a18_P 39 ITKFKLRGKKYLYTFKTADP 58 (89)
T ss_dssp CEEEEEECSSCEEEEEECSH
T ss_pred ceEEEEEecCceEEEEeCCH
Confidence 34444433478999999997
No 14
>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L
Probab=21.09 E-value=45 Score=23.38 Aligned_cols=10 Identities=20% Similarity=0.590 Sum_probs=9.5
Q ss_pred ceEEEEEECC
Q 041559 63 TFYTLVFYTV 72 (94)
Q Consensus 63 ~lyTLvMvDP 72 (94)
++|-+|||||
T Consensus 128 K~fEVILVDp 137 (204)
T 4a17_L 128 KFYEVILADP 137 (204)
T ss_dssp EEEEEEEECT
T ss_pred ceEEEEEecC
Confidence 6999999999
No 15
>3j21_M 50S ribosomal protein L15E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.79 E-value=45 Score=23.17 Aligned_cols=10 Identities=0% Similarity=0.411 Sum_probs=9.5
Q ss_pred ceEEEEEECC
Q 041559 63 TFYTLVFYTV 72 (94)
Q Consensus 63 ~lyTLvMvDP 72 (94)
++|-+|||||
T Consensus 126 K~fEVILVDp 135 (194)
T 3j21_M 126 KWFEVIMVDP 135 (194)
T ss_dssp EEEEEEEECS
T ss_pred eeEEEEEEcC
Confidence 6999999999
Done!