BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041561
(156 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 831
Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/196 (50%), Positives = 124/196 (63%), Gaps = 41/196 (20%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P++F F T+ SSCAKLSSLF G+QI +I+KDGY +++FVGS+ + +YC CG
Sbjct: 516 FPSEFSFATIASSCAKLSSLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYCKCGDVGAARY 575
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
VTWNEMIHGYA N Y +A+SLYKD+I+SG K D +TFVA+LT CSHS L
Sbjct: 576 YFDMMPGKNIVTWNEMIHGYAHNGYGLEAVSLYKDMISSGEKPDDITFVAVLTACSHSAL 635
Query: 105 VYAEVEIFNSMEHDHEVKPK---------CL---------------MPYKDDLVVWGDLV 140
V VEIF+SM EV PK CL MPYKDD +VW ++
Sbjct: 636 VDEGVEIFSSMLQKFEVVPKLDHYTCIIDCLGRVGRFNEVEVILDTMPYKDDTIVWEVVL 695
Query: 141 SSCQVHSNVRLAKKAA 156
SSC+VH+NV LAK+AA
Sbjct: 696 SSCRVHANVSLAKRAA 711
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +LSSCA+L L G+Q+ K G+ +D++V S+ IN+Y CG
Sbjct: 416 PDRTTLAIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSKCGKMEVSKHV 475
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI G++ N + A++ +K + G +F I + C+ +
Sbjct: 476 FSKLSELDVVCWNSMIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSL 535
Query: 106 YAEVEI 111
+ +I
Sbjct: 536 FQGQQI 541
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 29/137 (21%)
Query: 8 FTTVLSSCAK------------LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG- 54
+T+L CAK LS+ G+QI T VK G+ D+ + ++ +++Y G
Sbjct: 242 LSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNSLLDMYAKTGD 301
Query: 55 ----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTP 98
V+WN MI GY E+A+ ++ + G + D VT++ +LT
Sbjct: 302 MDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINMLTA 361
Query: 99 CSHSGLVYAEVEIFNSM 115
C SG V +IF+ M
Sbjct: 362 CVKSGDVKVGRQIFDCM 378
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P+ F TV S+C L + GR+ ++K G+ ++I+V +A + +Y CG
Sbjct: 134 VKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKCGLNEDAF 193
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VT+ M+ G ++ V++ + L++ ++ G+ D V+ IL C+
Sbjct: 194 RVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTILVICA 250
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 27/139 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + +L++C K + +GRQI + S+P I +WN ++
Sbjct: 350 PDDVTYINMLTACVKSGDVKVGRQIFDCM------------SSPSLI------SWNAILS 391
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
GY ++ +A+ L++ + D T IL+ C+ GL+ A ++ H V
Sbjct: 392 GYNQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSCAELGLLEAGKQV-------HAVS 444
Query: 123 PKCLMPYKDDLVVWGDLVS 141
K + + DD+ V L++
Sbjct: 445 QK--LGFYDDVYVASSLIN 461
>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Glycine max]
Length = 770
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 120/196 (61%), Gaps = 41/196 (20%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P++F F TV+SSCAKLSSLF G+Q +IVKDG+ +DIFVGS+ I +YC CG
Sbjct: 514 FPSEFSFATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARC 573
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
VTWNEMIHGYA+N A+ LY D+I+SG K D +T+VA+LT CSHS L
Sbjct: 574 FFDVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITYVAVLTACSHSAL 633
Query: 105 VYAEVEIFNSMEHDHEVKPK---------CL---------------MPYKDDLVVWGDLV 140
V +EIFN+M + V PK CL MP KDD VVW ++
Sbjct: 634 VDEGLEIFNAMLQKYGVVPKVAHYTCIIDCLSRAGRFNEVEVILDAMPCKDDAVVWEVVL 693
Query: 141 SSCQVHSNVRLAKKAA 156
SSC++H+N+ LAK+AA
Sbjct: 694 SSCRIHANLSLAKRAA 709
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P + +LSSCA+L L G+++ K G+ +D++V S+ IN+Y CG
Sbjct: 413 HPDRTTLAVILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKH 472
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN M+ G++ N + A+S +K + G +F +++ C+
Sbjct: 473 VFSKLPELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCA 528
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P+ F TV S+C L GR+ ++K G ++I+V +A + +Y CG
Sbjct: 134 VIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCGLNADAL 193
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VT+ M+ G A+ +++A L++ ++ G++ D V+ ++L C+
Sbjct: 194 RVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLGVCA 250
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTW 57
C +S+ G+Q+ T VK G+ D+ + ++ +++Y G V+W
Sbjct: 259 CHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVFVNLNRHSVVSW 318
Query: 58 NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
N MI GY E+A + + + G + D VT++ +LT C SG V +IF+ M
Sbjct: 319 NIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDVRTGRQIFDCM 376
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 18/109 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + +L++C K + GRQI + C +WN ++
Sbjct: 348 PDDVTYINMLTACVKSGDVRTGRQIFDCMP------------------CPSLTSWNAILS 389
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
GY +N +A+ L++ + D T IL+ C+ G + A E+
Sbjct: 390 GYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAGKEV 438
>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 124/197 (62%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P+QF + TVLS CAKLSSL GRQ+ ++I ++GY ND FVGSA I++Y CG
Sbjct: 487 MFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAAR 546
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWNEMIHGYA+N ++A+ LY+D+I SG K DG+TFVA+LT CSHSG
Sbjct: 547 WVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSG 606
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV ++IFNSM+ +H V+P C+ MP K D ++W L
Sbjct: 607 LVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVL 666
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC+V+++V LA++AA
Sbjct: 667 LSSCRVYADVSLARRAA 683
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEM 60
LSS G+Q+ +K G+ +D+ + ++ +++Y G V+WN M
Sbjct: 236 LSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVM 295
Query: 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
I GY + +AI + + G + D +T+V +L C SG + A ++F+ M
Sbjct: 296 IAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGM 350
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+P + +LSS A + L GRQ+ K + DI++ S I +Y CG
Sbjct: 386 VHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAK 445
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN M+ G + N ++A + +K + G+ ++ +L+ C+
Sbjct: 446 RIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCA 502
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+ T T +C L + GR+ +K G N+I+VG+A + +Y C
Sbjct: 105 WNTLISALTRNGACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQ 164
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++ M+ G A+++ V +A L++ ++ + + D V+ ++L CS G
Sbjct: 165 AFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGG 223
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 27/152 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + + +L +C K + GRQ+ DG S+P +WN ++
Sbjct: 322 PDEITYVNMLVACIKSGDIEAGRQMF-----DGM-------SSP------SLSSWNTILS 363
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
GY++NE ++A+ L++++ V D T IL+ + L+ ++ H V
Sbjct: 364 GYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQV-------HAVS 416
Query: 123 PKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
K + ++ D+ + L+ V +AK+
Sbjct: 417 QKAV--FRTDIYLASGLIGMYSKCGKVEMAKR 446
>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Vitis vinifera]
Length = 847
Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/197 (45%), Positives = 124/197 (62%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P+QF + TVLS CAKLSSL GRQ+ ++I ++GY ND FVGSA I++Y CG
Sbjct: 516 MFPSQFSYATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAAR 575
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWNEMIHGYA+N ++A+ LY+D+I SG K DG+TFVA+LT CSHSG
Sbjct: 576 WVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSG 635
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV ++IFNSM+ +H V+P C+ MP K D ++W L
Sbjct: 636 LVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVL 695
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC+V+++V LA++AA
Sbjct: 696 LSSCRVYADVSLARRAA 712
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F +VLS+C L + GR+ +K G N+I+VG+A + +Y C
Sbjct: 135 PTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQA 194
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++ M+ G A+++ V +A L++ ++ + + D V+ ++L CS G
Sbjct: 195 FGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGG 252
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEM 60
LSS G+Q+ +K G+ +D+ + ++ +++Y G V+WN M
Sbjct: 265 LSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVM 324
Query: 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
I GY + +AI + + G + D +T+V +L C SG + A ++F+ M
Sbjct: 325 IAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGM 379
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+P + +LSS A + L GRQ+ K + DI++ S I +Y CG
Sbjct: 415 VHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAK 474
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN M+ G + N ++A + +K + G+ ++ +L+ C+
Sbjct: 475 RIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCA 531
Score = 38.5 bits (88), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 27/152 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + + +L +C K + GRQ+ DG S+P +WN ++
Sbjct: 351 PDEITYVNMLVACIKSGDIEAGRQMF-----DGM-------SSP------SLSSWNTILS 392
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
GY++NE ++A+ L++++ V D T IL+ + L+ ++ H V
Sbjct: 393 GYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQV-------HAVS 445
Query: 123 PKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
K + ++ D+ + L+ V +AK+
Sbjct: 446 QKAV--FRTDIYLASGLIGMYSKCGKVEMAKR 475
>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
Length = 807
Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 116/197 (58%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++PT+ + ++++SCA+LSS+ GRQI +++KDGY +++VGS+ I++Y CG
Sbjct: 515 MFPTESSYASMINSCARLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDDAR 574
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WNEMIHGYA+N + E+A+ L++ ++ + K D VTF+A+LT CSHSG
Sbjct: 575 LFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSG 634
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV + FNSME ++ ++P CL MPYKDD ++W L
Sbjct: 635 LVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAILWEVL 694
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C VH N L + AA
Sbjct: 695 LAACVVHHNAELGEFAA 711
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +LS+C++L L LG+Q+ + VK ND+FV S I++Y CG
Sbjct: 414 VQPDRTTLAVILSTCSRLGILELGKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQ 473
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN MI G A + E+A +K + +G+ ++ +++ C+
Sbjct: 474 IIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRENGMFPTESSYASMINSCAR 531
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F +VLS+C +++L GR+ VK G + FV + + +Y CG
Sbjct: 140 PTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRL 199
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V++ M+ G A++ V+ A+ L+ + S ++ D V ++L C+ +
Sbjct: 200 FDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQA 256
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 28/143 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + ++ +L+SC K + R + +I K TWN ++
Sbjct: 350 PNEVTYSNMLASCIKARDVPSARAMFDKISKPSV------------------TTWNTLLS 391
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
GY + E + I L++ + V+ D T IL+ CS G++ ++ H VK
Sbjct: 392 GYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQV-----HSASVK 446
Query: 123 PKCLMPYKDDLVVWG--DLVSSC 143
L+ + D V G D+ S C
Sbjct: 447 ---LLLHNDMFVASGLIDMYSKC 466
>gi|334186756|ref|NP_193809.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635629|sp|Q9SVH0.2|PP329_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20770
gi|332658959|gb|AEE84359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 774
Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 109/195 (55%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F TVLSSC++L SL GRQ +VK GY +D FV +A ++YC CG
Sbjct: 517 PNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQF 576
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WNEMIHGY N ++A+ LY+ +I+SG K DG+TFV++LT CSHSGLV
Sbjct: 577 FDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLV 636
Query: 106 YAEVEIFNSMEHDHEVKPK---------CL---------------MPYKDDLVVWGDLVS 141
+EI +SM+ H ++P+ CL PYK V+W L+S
Sbjct: 637 ETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLS 696
Query: 142 SCQVHSNVRLAKKAA 156
SC+VH +V LA++ A
Sbjct: 697 SCRVHGDVSLARRVA 711
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 18/113 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P++F +VLS+C+K+ G + VK G +IFVG+A +++Y CG
Sbjct: 136 PSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVR 195
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V++ +I G A V +A+ +++ + GV+ D V IL+
Sbjct: 196 VFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILS 248
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 20/121 (16%)
Query: 15 CAKLSSLF---LGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------- 54
C LS ++ LG+QI ++ G+G D+ + ++ + IY
Sbjct: 256 CDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNV 315
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+WN MI G+ + ++++ + SG + + VT +++L C SG V IF+S
Sbjct: 316 VSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSS 375
Query: 115 M 115
+
Sbjct: 376 I 376
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + +LSSCA+L L G+QI +++ + + S I +Y C
Sbjct: 414 PDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECI 473
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVK-HDGVTFVAILTPCSH 101
WN MI G+ N +A+ L++ + + V + +F +L+ CS
Sbjct: 474 FDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSR 531
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + +VL +C + + GR+I + I + WN M+
Sbjct: 348 PNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVS------------------AWNAMLS 389
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
GY+ E+ E+AIS ++ + +K D T IL+ C+
Sbjct: 390 GYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCAR 428
>gi|5262217|emb|CAB45843.1| putative protein [Arabidopsis thaliana]
gi|7268873|emb|CAB79077.1| putative protein [Arabidopsis thaliana]
Length = 740
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 109/195 (55%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F TVLSSC++L SL GRQ +VK GY +D FV +A ++YC CG
Sbjct: 483 PNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQF 542
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WNEMIHGY N ++A+ LY+ +I+SG K DG+TFV++LT CSHSGLV
Sbjct: 543 FDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLV 602
Query: 106 YAEVEIFNSMEHDHEVKPK---------CL---------------MPYKDDLVVWGDLVS 141
+EI +SM+ H ++P+ CL PYK V+W L+S
Sbjct: 603 ETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLS 662
Query: 142 SCQVHSNVRLAKKAA 156
SC+VH +V LA++ A
Sbjct: 663 SCRVHGDVSLARRVA 677
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 18/113 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P++F +VLS+C+K+ G + VK G +IFVG+A +++Y CG
Sbjct: 102 PSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVR 161
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V++ +I G A V +A+ +++ + GV+ D V IL+
Sbjct: 162 VFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILS 214
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 20/121 (16%)
Query: 15 CAKLSSLF---LGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------- 54
C LS ++ LG+QI ++ G+G D+ + ++ + IY
Sbjct: 222 CDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNV 281
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+WN MI G+ + ++++ + SG + + VT +++L C SG V IF+S
Sbjct: 282 VSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSS 341
Query: 115 M 115
+
Sbjct: 342 I 342
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + +LSSCA+L L G+QI +++ + + S I +Y C
Sbjct: 380 PDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECI 439
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVK-HDGVTFVAILTPCSH 101
WN MI G+ N +A+ L++ + + V + +F +L+ CS
Sbjct: 440 FDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSR 497
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + +VL +C + + GR+I + I + WN M+
Sbjct: 314 PNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVS------------------AWNAMLS 355
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
GY+ E+ E+AIS ++ + +K D T IL+ C+
Sbjct: 356 GYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCAR 394
>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20770-like [Brachypodium distachyon]
Length = 805
Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 113/197 (57%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT+ + ++++SCA+LSS+ GRQI +IVKDGY +++VGSA I++Y CG
Sbjct: 513 MMPTESSYASMINSCARLSSVPQGRQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDDAR 572
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WNEMIHGYA+N + E+A+ L++ ++ + + DGVTF+A+LT CSHSG
Sbjct: 573 VFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSG 632
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV + FNSME + + P CL MP KDD +VW L
Sbjct: 633 LVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVWEVL 692
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C VH N L + AA
Sbjct: 693 LAACAVHHNAELGECAA 709
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +LSSC++L L LG Q+ + V+ ND+FV S +++Y CG
Sbjct: 412 VQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIAR 471
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN MI G A + E+A +K + +G+ ++ +++ C+
Sbjct: 472 IIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCAR 529
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F +VLS+C +++L GR+ VK G ++FV +A + +Y CG
Sbjct: 138 PTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRL 197
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V++ M+ G + V+ A+ L+ + SGV+ D V ++L C+ +
Sbjct: 198 FDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQA 254
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 25/134 (18%)
Query: 9 TTVLSSCAK--------LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
++VL SCA+ + + LG+ I IV+ G+G+D VG++ I++Y C
Sbjct: 245 SSVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAV 304
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G+ + +A+ + + SG + + VT+ +L C +
Sbjct: 305 KVFDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKAR 364
Query: 104 LVYAEVEIFNSMEH 117
V + +F+ +
Sbjct: 365 DVLSARAMFDKISR 378
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/167 (18%), Positives = 64/167 (38%), Gaps = 40/167 (23%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + ++ +L+SC K + R + +I + TWN ++
Sbjct: 348 PNEVTYSNMLASCIKARDVLSARAMFDKISRPSV------------------TTWNTLLS 389
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS-----MEH 117
GY + E + + L++ + V+ D T IL+ CS G++ ++ ++ + +
Sbjct: 390 GYCQEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHN 449
Query: 118 DHEVKPKCLMPY-----------------KDDLVVWGDLVSSCQVHS 147
D V + Y + D+V W ++S +HS
Sbjct: 450 DMFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHS 496
>gi|297799986|ref|XP_002867877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313713|gb|EFH44136.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 760
Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 112/197 (56%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + + VL SC++L SL GRQ ++VK GY +D FV +A ++YC CG
Sbjct: 501 LLPNETTYAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDSFVETAVTDMYCKCGEIESAR 560
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WNEMIHGYA N ++A+ LY+++I++G K DG+TFV++LT CSHSG
Sbjct: 561 QFFDTVSRKNTVIWNEMIHGYAHNGRGDEAVDLYREMISAGEKPDGITFVSVLTACSHSG 620
Query: 104 LVYAEVEIFNSMEHDHEVKPK---------CL---------------MPYKDDLVVWGDL 139
LV +EI +SM+ DH ++P+ CL PYK V+W L
Sbjct: 621 LVDTGLEILSSMQRDHGIEPELDHYICIVDCLGRAGRLEDAETLAEATPYKSSSVLWEIL 680
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC+V+ +V LA++ A
Sbjct: 681 LSSCRVYGDVSLARRVA 697
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 18/113 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P++F +VLS+C+K+ +G + VK G +IFVG+A +++Y CG
Sbjct: 122 PSRFTLASVLSACSKVQDGVIGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGVR 181
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V++ +I G A V +A+ +++ + GV+ D V IL+
Sbjct: 182 VFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGVQVDCVCLSNILS 234
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 19/118 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + +LSSCA+L L G+QI ++ D + S I +Y C
Sbjct: 400 PDRTTLSVILSSCARLRFLEGGKQIHGVAIRTETSEDSHIVSGLIAVYSECEKMEICECI 459
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGV-KHDGVTFVAILTPCSH 101
WN MI G N +A+ L++ + + V + T+ +L CS
Sbjct: 460 FDDCINELDIACWNSMISGLRRNTLDTKALMLFRRMHQTSVLLPNETTYAIVLGSCSR 517
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 18/99 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + ++L +C + + GR+I I + WN M+
Sbjct: 334 PNEVTCISILGACFRSGDVETGRRIFNTIPQPSVS------------------AWNAMLS 375
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
GY+ E+ E+AI+ ++ + +K D T IL+ C+
Sbjct: 376 GYSNYEHYEEAINNFRQMQFQNLKPDRTTLSVILSSCAR 414
>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
Length = 803
Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 112/197 (56%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT+ + ++++SC++LSS+ GRQI +++KDGY +++VGSA I++Y CG
Sbjct: 514 IMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDAR 573
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WNEMIHGYA+N ++A+ L++ ++ + K D VTF+A+LT CSHSG
Sbjct: 574 LFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSG 633
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV + FNSME+ + + P CL MP KDD ++W L
Sbjct: 634 LVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVL 693
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C VH N L K AA
Sbjct: 694 LAACVVHHNAELGKCAA 710
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +LSSC+KL L GRQ+ + V+ ND+FV S +++Y CG
Sbjct: 413 VQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIAR 472
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I G + ++A +K + +G+ ++ +++ CS
Sbjct: 473 SIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSR-- 530
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG----DLVSSCQVHSNVRL 151
+S+ H ++ + + D V G D+ + C + RL
Sbjct: 531 --------LSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARL 574
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT F +VLS+C L++L GR+ VK G + FV +A + +Y CG
Sbjct: 137 LLPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAV 196
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V++ M+ G A+ ++ A+ L+ + SGV D V+ ++L C+ +
Sbjct: 197 RLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQA 255
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 25/134 (18%)
Query: 9 TTVLSSCAKL--------SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++VL +CA+ + LG+ I +V+ G+G+D VG++ I++Y C
Sbjct: 246 SSVLGACAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAV 305
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G+ + +A+ + + +G + + VT+ +L C +
Sbjct: 306 KVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKAR 365
Query: 104 LVYAEVEIFNSMEH 117
V++ +F+ +
Sbjct: 366 DVHSARAMFDKISR 379
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 28/143 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + ++ +L+SC K + R + +I + TWN ++
Sbjct: 349 PNEVTYSNLLASCIKARDVHSARAMFDKISRPSV------------------TTWNTLLS 390
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
GY + E + I L++ + V+ D T IL+ CS G++ F H V+
Sbjct: 391 GYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILD-----FGRQVHSASVR 445
Query: 123 PKCLMPYKDDLVVWG--DLVSSC 143
+ + D V G D+ S C
Sbjct: 446 ---FLLHNDMFVASGLVDMYSKC 465
>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
Length = 526
Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 112/197 (56%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT+ + ++++SC++LSS+ GRQI +++KDGY +++VGSA I++Y CG
Sbjct: 237 IMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDAR 296
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WNEMIHGYA+N ++A+ L++ ++ + K D VTF+A+LT CSHSG
Sbjct: 297 LFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSG 356
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV + FNSME+ + + P CL MP KDD ++W L
Sbjct: 357 LVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVL 416
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C VH N L K AA
Sbjct: 417 LAACVVHHNAELGKCAA 433
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +LSSC+KL L GRQ+ + V+ ND+FV S +++Y CG
Sbjct: 136 VQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIAR 195
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I G + ++A +K + +G+ ++ +++ CS
Sbjct: 196 SIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSR-- 253
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG----DLVSSCQVHSNVRL 151
+S+ H ++ + + D V G D+ + C + RL
Sbjct: 254 --------LSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARL 297
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 18/103 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + ++ +L+SC K + R + +I + TWN ++
Sbjct: 72 PNEVTYSNLLASCIKARDVHSARAMFDKISRPSV------------------TTWNTLLS 113
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
GY + E + I L++ + V+ D T IL+ CS G++
Sbjct: 114 GYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGIL 156
>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
Length = 518
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 112/197 (56%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT+ + ++++SC++LSS+ GRQI +++KDGY +++VGSA I++Y CG
Sbjct: 221 IMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDAR 280
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WNEMIHGYA+N ++A+ L++ ++ + K D VTF+A+LT CSHSG
Sbjct: 281 LFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSG 340
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV + FNSME+ + + P CL MP KDD ++W L
Sbjct: 341 LVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVL 400
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C VH N L K AA
Sbjct: 401 LAACVVHHNAELGKCAA 417
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +LSSC+KL L GRQ+ + V+ ND+FV S +++Y CG
Sbjct: 120 VQPDRTTLAVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIAR 179
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I G + ++A +K + +G+ ++ +++ CS
Sbjct: 180 SIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSR-- 237
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG----DLVSSCQVHSNVRL 151
+S+ H ++ + + D V G D+ + C + RL
Sbjct: 238 --------LSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARL 281
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 18/103 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + ++ +L+SC K + R + +I + TWN ++
Sbjct: 56 PNEVTYSNLLASCIKARDVHSARAMFDKISRPSV------------------TTWNTLLS 97
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
GY + E + I L++ + V+ D T IL+ CS G++
Sbjct: 98 GYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGIL 140
>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
Length = 807
Score = 135 bits (340), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 112/197 (56%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++PT+ + ++++ CA+LSS+ GRQ+ +++KDGY +++VG + I++Y G
Sbjct: 515 MFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDAR 574
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WNEMIHGYA+N + E+A+ L++ ++ + K D VTF+A+LT CSHSG
Sbjct: 575 LFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSG 634
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV V FNSME ++ + P CL MPYKDD ++W L
Sbjct: 635 LVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVL 694
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C VH N L + +A
Sbjct: 695 LAACVVHHNAELGEFSA 711
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +LSSC++L + LG+Q+ + V+ ND+FV S I+IY CG
Sbjct: 414 VQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIAL 473
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN MI G A + E+A K + +G+ ++ +++ C+
Sbjct: 474 IIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCAR 531
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F +VLS+C +++L GR+ VK G FV + + +Y CG
Sbjct: 140 PTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRL 199
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V++ M+ G A+ V+ A+ L+ + +G++ D V ++L C+ +
Sbjct: 200 FDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQA 256
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 18/101 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + ++ +L+SC K + R + +I K TWN ++
Sbjct: 350 PNEVTYSNMLASCIKARDVPSARAMFDKIPKPSV------------------TTWNTLLS 391
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
GY + E ++ I L++ + V+ D T IL+ CS G
Sbjct: 392 GYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLG 432
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 25/116 (21%)
Query: 9 TTVLSSCAKL--------SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++VL +CA+ ++ L + I +V+ G+G+D VG++ +++Y
Sbjct: 247 SSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAI 306
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN +I GY + E+A+ + + + SG + + VT+ +L C
Sbjct: 307 KVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASC 362
>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
gi|194688792|gb|ACF78480.1| unknown [Zea mays]
Length = 706
Score = 135 bits (340), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 112/197 (56%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++PT+ + ++++ CA+LSS+ GRQ+ +++KDGY +++VG + I++Y G
Sbjct: 414 MFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDAR 473
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WNEMIHGYA+N + E+A+ L++ ++ + K D VTF+A+LT CSHSG
Sbjct: 474 LFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHSG 533
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV V FNSME ++ + P CL MPYKDD ++W L
Sbjct: 534 LVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEVL 593
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C VH N L + +A
Sbjct: 594 LAACVVHHNAELGEFSA 610
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +LSSC++L + LG+Q+ + V+ ND+FV S I+IY CG
Sbjct: 313 VQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIAL 372
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN MI G A + E+A K + +G+ ++ +++ C+
Sbjct: 373 IIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCAR 430
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F +VLS+C +++L GR+ VK G FV + + +Y CG
Sbjct: 39 PTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRL 98
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V++ M+ G A+ V+ A+ L+ + +G++ D V ++L C+ +
Sbjct: 99 FDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQA 155
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 18/101 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + ++ +L+SC K + R + +I K TWN ++
Sbjct: 249 PNEVTYSNMLASCIKARDVPSARAMFDKIPKPSV------------------TTWNTLLS 290
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
GY + E ++ I L++ + V+ D T IL+ CS G
Sbjct: 291 GYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLG 331
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 25/116 (21%)
Query: 9 TTVLSSCAKL--------SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++VL +CA+ ++ L + I +V+ G+G+D VG++ +++Y
Sbjct: 146 SSVLGACAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAI 205
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN +I GY + E+A+ + + + SG + + VT+ +L C
Sbjct: 206 KVFESLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASC 261
>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 705
Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 107/203 (52%), Gaps = 47/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY------GNDIFVGSAPINIYCNCG 54
++PT + F +L++CA L+ L LGRQ T I+K G+ +DIFVG++ I++Y CG
Sbjct: 381 IWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCG 440
Query: 55 -----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI GYA+N Y +A+ ++++++ SG + D VT + +L+
Sbjct: 441 LVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLS 500
Query: 98 PCSHSGLVYAEVEIFNSMEHDHEVKP---------------KCL---------MPYKDDL 133
CSH+GLV F SM +H + P CL MP + D
Sbjct: 501 ACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDA 560
Query: 134 VVWGDLVSSCQVHSNVRLAKKAA 156
VVWG L+++C+VH N+ L K A
Sbjct: 561 VVWGSLLAACKVHGNITLGKYVA 583
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 30/169 (17%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++ F + LS+CA L L +G QI I K Y D+++GSA +++Y C
Sbjct: 150 NEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAF 209
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V+WN +I Y +N +A+ ++ ++ G++ D +T ++ + C+ +
Sbjct: 210 DDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIR 269
Query: 107 AEVEIFNS-MEHDHEVKPKCLMPYKDDLVVWG---DLVSSCQVHSNVRL 151
++I M+HD Y++DLV+ D+ + C+ + RL
Sbjct: 270 EGLQIHARVMKHD---------KYRNDLVLGNALVDMYAKCRRVNEARL 309
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------ 54
PF +L +C K S+F R + RI+K + ++IF+ + +++Y CG
Sbjct: 21 PFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHM 80
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYK 78
+WN ++ + +++A++L+K
Sbjct: 81 QQRNTFSWNAVLGALTKFGALDEALNLFK 109
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 121 bits (304), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 106/203 (52%), Gaps = 47/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY------GNDIFVGSAPINIYCNCG 54
++PT + F +L++CA L+ L LGRQ T+I+K G+ +DIFVG++ I++Y CG
Sbjct: 381 IWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCG 440
Query: 55 -----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI GYA+N Y A+ +++ ++ SG K D VT + +L+
Sbjct: 441 MVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLS 500
Query: 98 PCSHSGLVYAEVEIFNSMEHDHEVKPK---------------CL---------MPYKDDL 133
CSH+GLV F+SM + + P CL MP + D
Sbjct: 501 ACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDN 560
Query: 134 VVWGDLVSSCQVHSNVRLAKKAA 156
VVWG L+++C+VH N+ L K A
Sbjct: 561 VVWGSLLAACKVHGNIELGKYVA 583
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 83/168 (49%), Gaps = 28/168 (16%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++ F + LS+CA L+ L +G QI I K Y D+++GSA +++Y CG
Sbjct: 150 NEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAF 209
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V+WN +I Y +N +A+ ++ ++ +GV+ D +T ++++ C+ +
Sbjct: 210 DGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIR 269
Query: 107 AEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG---DLVSSCQVHSNVRL 151
++I H VK Y++DLV+ D+ + C+ + RL
Sbjct: 270 EGLQI-----HARVVKRD---KYRNDLVLGNALVDMYAKCRRVNEARL 309
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 83/173 (47%), Gaps = 31/173 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCG----- 54
V P + +V+S+CA S++ G QI R+VK D Y ND+ +G+A +++Y C
Sbjct: 248 VEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEA 307
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+ M+ GYA V+ A ++ +++ V V++ A++ + +
Sbjct: 308 RLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNV----VSWNALIAGYTQN 363
Query: 103 GLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155
G V +F + K + + P +G+L+++C ++++L ++A
Sbjct: 364 GENEEAVRLFLLL------KRESIWPTH---YTFGNLLNACANLADLKLGRQA 407
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 48/142 (33%)
Query: 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------ 54
PF +L SC + S R+I RI+K + ++IF+ + ++ Y CG
Sbjct: 21 PFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRM 80
Query: 55 ------------------------------------VTWNEMIHGYAENEYVEQAISLYK 78
+WN M+ G+A+++ E+A+ +
Sbjct: 81 PQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFV 140
Query: 79 DIIASGVKHDGVTFVAILTPCS 100
D+ + + +F + L+ C+
Sbjct: 141 DMHSEDFVLNEYSFGSALSACA 162
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 104/202 (51%), Gaps = 46/202 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG------NDIFVGSAPINIYCNCG 54
++PT + F +LS+CA L+ L LGRQ T ++K G+ +DIFVG++ I++Y CG
Sbjct: 377 IWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCG 436
Query: 55 -----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN +I GYA+N Y +A+ +++ ++ G K D VT + +L
Sbjct: 437 SIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLC 496
Query: 98 PCSHSGLVYAEVEIFNSMEH-------DHEV-------KPKCL---------MPYKDDLV 134
CSH+GLV F SME DH + CL MP D V
Sbjct: 497 ACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAV 556
Query: 135 VWGDLVSSCQVHSNVRLAKKAA 156
VWG L+++C+VH N+ + K AA
Sbjct: 557 VWGSLLAACKVHGNIEMGKHAA 578
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 25/168 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++ F + LS+CA L L +G Q+ + K Y D+++GSA I++Y CG
Sbjct: 146 NEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVF 205
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
VTWN +I Y +N +A+ ++ ++ SG++ D VT ++++ C+ +
Sbjct: 206 SGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALK 265
Query: 107 AEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
++I H VK ++DDLV+ LV S V A++
Sbjct: 266 EGLQI-----HARVVKTN---KFRDDLVLGNALVDMYAKCSKVNEARR 305
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 79/171 (46%), Gaps = 31/171 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCG------- 54
P + +V+S+CA L +L G QI R+VK + + +D+ +G+A +++Y C
Sbjct: 246 PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+ M+ GYA V+ A ++ + V V++ A++ + +G
Sbjct: 306 VFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAGYTQNGE 361
Query: 105 VYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155
+ +F + K + + P +G+L+S+C +++ L ++A
Sbjct: 362 NEEALRLFRLL------KRESIWPTH---YTFGNLLSACANLADLLLGRQA 403
>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Vitis vinifera]
Length = 703
Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 105/195 (53%), Gaps = 42/195 (21%)
Query: 4 TQFP-FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
+ FP +VLS CA L+SL GRQ+ +VK + +D+FV S I +Y CG
Sbjct: 328 SNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQI 387
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN +I GYA++ VE+A+ ++ ++ +SG+ DGVTFV +L+ CS++G V
Sbjct: 388 FDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKV 447
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+EIF SM+ + V+PK C+ MP + D ++WG L+
Sbjct: 448 KEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLG 507
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H N+ LA+ AA
Sbjct: 508 ACRTHMNMNLAEVAA 522
>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
FT LS+C+ +++L LGRQ+ R+VK GY +VG+A + +YC CG
Sbjct: 183 FTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEIL 242
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN MIHGYA + + E+A+++++ + +G++ D T V++L CSH+GLV E
Sbjct: 243 EKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSE 302
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
F SM D+ + K C+ MP++ D WG L+ + ++H
Sbjct: 303 YFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIH 362
Query: 147 SNVRLAKKAA 156
N L +KAA
Sbjct: 363 GNTELGEKAA 372
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F++ LS+CA + +L LG+Q+ R+VK GY FVG+A + +YC CG
Sbjct: 407 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA 466
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN MI GY+ + + E+A+ ++ + G+K D T VA+L+ CSH+GLV +
Sbjct: 467 GKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 526
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
F++M D+ V+P C+ MP++ D +WG L+ + +VH
Sbjct: 527 YFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVH 586
Query: 147 SNVRLAKKAA 156
N LA+ AA
Sbjct: 587 GNTELAETAA 596
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 51 CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
C TWN MI GYA+ + +A +L+ + K D V++ A++ S SG Y +
Sbjct: 335 CRNVSTWNTMITGYAQCGKISEAKNLFDKM----PKRDPVSWAAMIAGYSQSGHSYEALR 390
Query: 111 IFNSMEHD 118
+F ME +
Sbjct: 391 LFVLMERE 398
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+WN +I GYA+N +++A L+ + HD T+ A+++ + +V E+F+
Sbjct: 246 VSWNTIITGYAQNGEIDEARQLFDESPV----HDVFTWTAMVSGYIQNRMVEEARELFDR 301
Query: 115 MEHDHEVKPKCLM 127
M +EV ++
Sbjct: 302 MPERNEVSWNAML 314
>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 697
Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 101/203 (49%), Gaps = 47/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG------NDIFVGSAPINIYCNCG 54
V PT + F +L +CA L+ L LG Q ++K G+ +DIFVG++ I++Y CG
Sbjct: 382 VCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCG 441
Query: 55 -----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI G+A+N Y +A+ L+++++ SG K D +T + +L+
Sbjct: 442 CVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLS 501
Query: 98 PCSHSGLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDL 133
C H+G V F+SM D V P C+ MP + D
Sbjct: 502 ACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDS 561
Query: 134 VVWGDLVSSCQVHSNVRLAKKAA 156
V+WG L+++C+VH N+ L K A
Sbjct: 562 VIWGSLLAACKVHRNITLGKYVA 584
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 63/114 (55%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++ F +VLS+C+ L+ + G Q+ + I K + +D+++GSA +++Y CG
Sbjct: 151 NEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVF 210
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I + +N +A+ +++ ++ S V+ D VT ++++ C+
Sbjct: 211 DEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACA 264
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 49/149 (32%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCG----- 54
V P + +V+S+CA LS++ +G+++ R+VK D NDI + +A +++Y C
Sbjct: 249 VEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEA 308
Query: 55 -------------------------------------------VTWNEMIHGYAENEYVE 71
V+WN +I GY +N E
Sbjct: 309 RFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENE 368
Query: 72 QAISLYKDIIASGVKHDGVTFVAILTPCS 100
+A+SL+ + V +F IL C+
Sbjct: 369 EALSLFCLLKRESVCPTHYSFANILKACA 397
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 20/93 (21%)
Query: 7 PFTTVLSSC--AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
PF +L SC +KLS++++ R + ++K G+ N+IF+ + I+ Y CG
Sbjct: 21 PFAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFD 79
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDI 80
TWN ++ G + ++++A SL++ +
Sbjct: 80 KMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSM 112
>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 697
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 101/203 (49%), Gaps = 47/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG------NDIFVGSAPINIYCNCG 54
V PT + F +L +CA L+ L LG Q ++K G+ +DIFVG++ I++Y CG
Sbjct: 382 VCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCG 441
Query: 55 -----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI G+A+N Y +A+ L+++++ SG K D +T + +L+
Sbjct: 442 CVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLS 501
Query: 98 PCSHSGLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDL 133
C H+G V F+SM D V P C+ MP + D
Sbjct: 502 ACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDS 561
Query: 134 VVWGDLVSSCQVHSNVRLAKKAA 156
V+WG L+++C+VH N+ L K A
Sbjct: 562 VIWGSLLAACKVHRNITLGKYVA 584
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 61/114 (53%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++ F + LS+C+ L+ + G QI + I K +D+++GSA +++Y CG
Sbjct: 151 NEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVF 210
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I Y +N +A+ +++ ++ S V+ D VT ++++ C+
Sbjct: 211 DEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACA 264
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 49/149 (32%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCG----- 54
V P + +V+S+CA LS++ +G+++ R+VK D NDI + +A +++Y C
Sbjct: 249 VEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEA 308
Query: 55 -------------------------------------------VTWNEMIHGYAENEYVE 71
V+WN +I GY +N E
Sbjct: 309 RFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENE 368
Query: 72 QAISLYKDIIASGVKHDGVTFVAILTPCS 100
+A+SL+ + V TF IL C+
Sbjct: 369 EALSLFCLLKRESVCPTHYTFANILKACA 397
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 18/92 (19%)
Query: 7 PFTTVLSSCAKLS-SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
PF +L SC KL S R + ++K G+ N++F+ + I+ Y CG
Sbjct: 21 PFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDK 80
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDI 80
TWN ++ G + ++++A SL++ +
Sbjct: 81 MPQRNVFTWNSVVTGLTKLGFLDEADSLFRSM 112
>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 750
Score = 114 bits (286), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 99/190 (52%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F LS+CA +++L LG+Q+ ++V+ GY VG+A + +YC CG
Sbjct: 381 FCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQ 440
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN M+ GYA + + QA+++++ +I +GVK D +T V +L+ CSH+GL E
Sbjct: 441 HKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTE 500
Query: 111 IFNSMEHDHEVKPK---------------CL---------MPYKDDLVVWGDLVSSCQVH 146
F+SM D+ + P CL MP++ D WG L+ + ++H
Sbjct: 501 YFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIH 560
Query: 147 SNVRLAKKAA 156
N+ L ++AA
Sbjct: 561 GNMELGEQAA 570
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 101/197 (51%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F F ++L++C+ S+L G+++ IVK D+ VG+A I++Y CG
Sbjct: 730 VVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQ 789
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI+ YA++ +A+ + + G+K DG TF +IL+ C+H+G
Sbjct: 790 EVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAG 849
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +IF+SME ++ V P CL MP+ D VW L
Sbjct: 850 LVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETL 909
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N+ LA+ AA
Sbjct: 910 LGACRIHGNIALAEHAA 926
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 17/112 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ ++L++C+ +L G+ I + I +DG+ +D+ +G+A I++Y CG
Sbjct: 333 YLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP 392
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++WN +I GYA E +A+ LYK + + GVK VTF+ +L+ C++S
Sbjct: 393 KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS 444
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F +VLS C +L LG+QI RI + G D+ +G+A IN+Y CG
Sbjct: 530 PDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNV 589
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI G A+ +AI L+ + G + TF +IL C+ S
Sbjct: 590 FHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSA 647
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F +LS+CA S+ G+ I I++ G ++ + +A +N+Y CG
Sbjct: 427 VKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQ 486
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++WN MI G+A++ E A L++++ ++ D +TF ++L+ C +
Sbjct: 487 NVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKN 544
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + ++L++C + L G++I ++I+K GY D V ++ +++Y CG
Sbjct: 126 PNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQV 185
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V++N M+ YA+ YV++ + L+ + + G+ D VT++ +L
Sbjct: 186 FAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLL 236
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F+++L C + L G++++ I+ GY D VG+A I+ Y G
Sbjct: 631 PVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREV 690
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN++I GYA+N + A+ + V + +FV++L CS
Sbjct: 691 FDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACS 745
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 28/152 (18%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +L +C + L ++I ++V+ G DIF+ + IN+Y C
Sbjct: 30 YVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMP 89
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
++WN +I YA+ + ++A L++++ +G + +T+++ILT C Y+ E
Sbjct: 90 RRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTAC------YSPAE 143
Query: 111 IFNSME-HDHEVKPKCLMPYKDDLVVWGDLVS 141
+ N + H +K Y+ D V L+S
Sbjct: 144 LENGKKIHSQIIKAG----YQRDPRVQNSLLS 171
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + + +L + S L G++I V++G +DI VG+A + + CG
Sbjct: 225 ISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAK 284
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V +N +I A++ + +A Y + + GV + T+++IL CS S
Sbjct: 285 QAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSK 344
Query: 104 LVYAEVEIFNSMEHD 118
+ A I + + D
Sbjct: 345 ALEAGKLIHSHISED 359
>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Cucumis sativus]
Length = 816
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q F ++L +CA L+S+ LGRQ+ + +++ G+ ++++ GSA ++ Y CG
Sbjct: 443 QATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFG 502
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+WN +I YA+N V+ ++ ++ +I SG K D V+F+++L+ CSH G V
Sbjct: 503 EMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEE 562
Query: 108 EVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVSSC 143
+ FNSM +EV PK MP++ ++W +++SC
Sbjct: 563 ALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSC 622
Query: 144 QVHSNVRLAKKAA 156
++H N LAKKAA
Sbjct: 623 RIHKNHELAKKAA 635
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QFPF T+LS +L +GRQI + + G + V +A +++Y C
Sbjct: 342 QFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFD 401
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V W MI Y + E+ I+++ D+ +GV D TF +IL C++
Sbjct: 402 NIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACAN 455
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 17/114 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
+ P T+LS +L + + QI T ++K GY ++ V ++ ++ YC
Sbjct: 136 IEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLAS 195
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
VT+N ++ GY+ E+AI L+ ++ SG+K TF A+L+
Sbjct: 196 QLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLS 249
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113
V+W +I GY ++ ++A LY D+ G++ D VT V +L+ + E+E N
Sbjct: 105 AVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG-------FGELETKN 157
Query: 114 SME--HDHEVKPKCLMPYKDDLVVWGDLVSS-CQVH 146
+ H H +K + Y+ +L+V LV + C+ H
Sbjct: 158 VIVQIHTHVIK----LGYEYNLMVCNSLVDAYCKTH 189
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
+ P+ F F +LS+ L G+Q+ ++K + ++FVG+A ++ Y
Sbjct: 237 IKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVG 296
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
G+++N +I YA N +++ L++ + + F +L+ + S
Sbjct: 297 KLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSS 355
>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g01510-like [Cucumis
sativus]
Length = 816
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q F ++L +CA L+S+ LGRQ+ + +++ G+ ++++ GSA ++ Y CG
Sbjct: 443 QATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFG 502
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+WN +I YA+N V+ ++ ++ +I SG K D V+F+++L+ CSH G V
Sbjct: 503 EMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEE 562
Query: 108 EVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVSSC 143
+ FNSM +EV PK MP++ ++W +++SC
Sbjct: 563 ALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSC 622
Query: 144 QVHSNVRLAKKAA 156
++H N LAKKAA
Sbjct: 623 RIHKNHELAKKAA 635
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QFPF T+LS +L +GRQI + + G + V +A +++Y C
Sbjct: 342 QFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFD 401
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V W MI Y + E+ I+++ D+ +GV D TF +IL C++
Sbjct: 402 NIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACAN 455
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 17/114 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
+ P T+LS +L + + QI T ++K GY ++ V ++ ++ YC
Sbjct: 136 IEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLAS 195
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
VT+N ++ GY+ E+AI L+ ++ SG+K TF A+L+
Sbjct: 196 QLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLS 249
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 14/96 (14%)
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113
V+W +I GY ++ ++A LY D+ G++ D VT V +L+ + E+E N
Sbjct: 105 AVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG-------FGELETKN 157
Query: 114 SME--HDHEVKPKCLMPYKDDLVVWGDLVSS-CQVH 146
+ H H +K + Y+ +L+V LV + C+ H
Sbjct: 158 VIVQIHTHVIK----LGYEYNLMVCNSLVDAYCKTH 189
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 52/119 (43%), Gaps = 17/119 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
+ P+ F F +LS+ L G+Q+ ++K + ++FVG+A ++ Y
Sbjct: 237 IKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVG 296
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
G+++N +I YA N +++ L++ + + F +L+ + S
Sbjct: 297 KLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSS 355
>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F F +VLS C ++ L G+Q+ ++ G + V SA IN+Y CG
Sbjct: 369 PNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKI 428
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI+GYAE+ Y ++AI L+K + G++ D VTF+A+L CSH+GLV
Sbjct: 429 FDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLV 488
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
FNS+ H++ P C+ MP++ D VVW L+
Sbjct: 489 DLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDDVVWSTLLR 548
Query: 142 SCQVHSNVRLAKKAA 156
+C++H +V K+AA
Sbjct: 549 ACRIHGDVDCGKRAA 563
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F F V+S CA L + G Q+ +++ G + + V ++ + +Y C
Sbjct: 266 VSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLAS 325
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W+ MI GYA+ E+A + G + + F ++L+ C +
Sbjct: 326 TVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMA 385
Query: 104 LV 105
++
Sbjct: 386 IL 387
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F + L +C S+ G + VK + N +FVGSA +++Y G
Sbjct: 69 FILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKE 128
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+W +I G Y ++A++ + D+ V D TF + L C+ SG +
Sbjct: 129 MPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYG 188
Query: 109 VEI 111
EI
Sbjct: 189 REI 191
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F++ L +CA +L GR+I + +K G+ FV + +Y CG
Sbjct: 170 YTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFES 229
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W +I + E A+ ++ + + V + TF A+++ C+ G +
Sbjct: 230 MTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRI 286
>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like, partial [Vitis vinifera]
Length = 825
Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 103/197 (52%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V Q F ++L + A ++SL LG+Q+ + I+K G+ +++F GSA +++Y CG
Sbjct: 448 VIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAV 507
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI YA+N E + +K+++ SG++ D V+F+ +L+ CSHSG
Sbjct: 508 QTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSG 567
Query: 104 LVYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDL 139
LV + FNSM +++ P+ MP D ++W +
Sbjct: 568 LVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSV 627
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C++H N LA++AA
Sbjct: 628 LNACRIHKNQELARRAA 644
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QFPF T+LS + +GRQI + + ++I VG++ +++Y CG
Sbjct: 351 QFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFT 410
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V W MI Y + + E+ + L+ + + V D TF ++L
Sbjct: 411 NLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLL 459
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 19/119 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F T+LS C Q+ T+I+K GY + + VG+ ++ YC
Sbjct: 147 PDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQL 206
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V++N MI GY+++ E+A++L+ ++ SG+K TF A+L C++ GL
Sbjct: 207 FKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGL 263
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC----------- 51
PT+F F VL + L + LG+QI + ++K + ++FV +A ++ Y
Sbjct: 248 PTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKL 307
Query: 52 ------NCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
GV++N +I GYA + + A L++++ + F +L+ S++
Sbjct: 308 FDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNT 364
Score = 35.4 bits (80), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTW +I GY++ ++A L+ + G + D VTFV +L+ C+
Sbjct: 114 AVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCN 160
>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
Length = 785
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 103/197 (52%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V Q F ++L + A ++SL LG+Q+ + I+K G+ +++F GSA +++Y CG
Sbjct: 408 VIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAV 467
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI YA+N E + +K+++ SG++ D V+F+ +L+ CSHSG
Sbjct: 468 QTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSG 527
Query: 104 LVYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDL 139
LV + FNSM +++ P+ MP D ++W +
Sbjct: 528 LVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSV 587
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C++H N LA++AA
Sbjct: 588 LNACRIHKNQELARRAA 604
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QFPF T+LS + +GRQI + + ++I VG++ +++Y CG
Sbjct: 311 QFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFT 370
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V W MI Y + + E+ + L+ + + V D TF ++L
Sbjct: 371 NLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLL 419
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 17/114 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC-------------- 51
F F VL + L + LG+QI + ++K + ++FV +A ++ Y
Sbjct: 211 FTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDE 270
Query: 52 ---NCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
GV++N +I GYA + + A L++++ + F +L+ S++
Sbjct: 271 MPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNT 324
Score = 35.4 bits (80), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTW +I GY++ ++A L+ + G + D VTFV +L+ C+
Sbjct: 109 AVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCN 155
>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 763
Score = 112 bits (281), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F+ LS+CA +++L LG+Q+ ++VK G+ FVG+A + +Y CG
Sbjct: 394 FSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIE 453
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN MI GYA + + QA+ L++ + +GVK D +T V +L+ CSHSGL+ E
Sbjct: 454 EKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTE 513
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
F SM+ D+ VKP C+ MP+ WG L+ + ++H
Sbjct: 514 YFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIH 573
Query: 147 SNVRLAKKAA 156
N L +KAA
Sbjct: 574 GNTELGEKAA 583
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
+WN M+ GY N + +A L+ D++ K D V++ A+L+ + +G V E+FN M
Sbjct: 110 SWNVMLTGYVRNRRLGEAHKLF-DLMP---KKDVVSWNAMLSGYAQNGFVDEAREVFNKM 165
Query: 116 EHDHEVKPKCLM 127
H + + L+
Sbjct: 166 PHRNSISWNGLL 177
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+WN M+ GYA+N +V++A +++ + +++ +L H+G + +F S
Sbjct: 140 VSWNAMLSGYAQNGFVDEA----REVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFES 195
Query: 115 MEHDHEVKPKCLM 127
+ + CLM
Sbjct: 196 QSNWELISWNCLM 208
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 112 bits (280), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 100/203 (49%), Gaps = 47/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG------NDIFVGSAPINIYCNCG 54
V PT + F +L++ A L+ L LGRQ + +VK G+ DIFVG++ I++Y CG
Sbjct: 386 VCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCG 445
Query: 55 -----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI GYA+N Y +A+ L++ ++ SG K D VT + L
Sbjct: 446 SVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLC 505
Query: 98 PCSHSGLVYAEVEIFNSMEHDHEVKP---------------KCL---------MPYKDDL 133
CSH+GLV F SM +H + P CL MP + D
Sbjct: 506 ACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDA 565
Query: 134 VVWGDLVSSCQVHSNVRLAKKAA 156
VVW L+S+C+VH N+ L K A
Sbjct: 566 VVWSSLLSACKVHRNITLGKYVA 588
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 25/152 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F + LS+C++L L LG QI I K Y D+F+GS I+ Y CG
Sbjct: 157 YSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDG 216
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN +I Y +N +A+ + + G K D VT ++++ C+
Sbjct: 217 MEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEG 276
Query: 109 VEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140
V+I H VK +++DL++ LV
Sbjct: 277 VQI-----HARVVKSD---KFRNDLILGNALV 300
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 22/134 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCG------- 54
P + +V+S+CA L++ G QI R+VK D + ND+ +G+A +++Y CG
Sbjct: 255 PDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARC 314
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+ M+ GYA++ V+ A S++ I + D V++ A++ + +G
Sbjct: 315 VFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATI----KQKDIVSWNALIAGYTQNGE 370
Query: 105 VYAEVEIFNSMEHD 118
+ +F ++ +
Sbjct: 371 NEEALGLFRMLKRE 384
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+F F ++L++C+ S+L G+++ IVK D+ VG+A I++Y CG
Sbjct: 788 NKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVF 847
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
VTWN MI+ YA++ +A+ + + G+K DG TF +IL+ C+HSGLV
Sbjct: 848 DNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVM 907
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
IF+S+E H + P CL MP+ D VW L+ +
Sbjct: 908 EGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGA 967
Query: 143 CQVHSNVRLAKKAA 156
C++H NV LA+ AA
Sbjct: 968 CRIHGNVALAEHAA 981
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 17/112 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +VL++C+ +L G I + I + G+ +D+ +G++ I++Y CG
Sbjct: 388 YLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMP 447
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++WN +I GYA E +A+ LYK + + GVK VTF+ +L+ C++S
Sbjct: 448 KRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNS 499
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F +VL C +L LGRQI I++ G D+ +G+A IN+Y CG
Sbjct: 585 PDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEV 644
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++W MI G+A+ +A L+ + G K TF +IL C S
Sbjct: 645 FHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSS 701
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F+++L +C + L G++++ I+ GY D VG+A I+ Y G
Sbjct: 686 PVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKV 745
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN+MI GYA+N A+ + GV + +FV+IL CS
Sbjct: 746 FDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACS 800
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P++ + ++L++C + L G++I ++I++ GY D V ++ +N+Y C
Sbjct: 181 PSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQV 240
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V++N M+ YA+ YVE+ I L+ + + G+ D VT++ +L
Sbjct: 241 FSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLL 291
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F +LS+C S+ G+ I I++ G ++ + +A +N+Y CG
Sbjct: 482 VKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQ 541
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++WN MI G+A++ E A L+ ++ G++ D +TF ++L C +
Sbjct: 542 NVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKN 599
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ ++ +C + SL ++I ++V+ G G DIF+ + IN+Y C
Sbjct: 85 YVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMP 144
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTP-CSHSGLVYAEV 109
++WN +I YA+ + ++A L++++ +G +T+++ILT CS + L Y +
Sbjct: 145 RRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKK 204
Query: 110 EIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNV 149
+E ++ P+ + DL S+ QV S +
Sbjct: 205 IHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGI 244
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + +L + S L G++I V +G +DI VG+A ++ CG
Sbjct: 282 PDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQA 341
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V +N +I A++ + E+A Y + + GV + T++++L CS S
Sbjct: 342 LEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTS 398
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F++ LS+CA + +L LG+Q+ R+VK GY FVG+A + +YC CG
Sbjct: 412 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA 471
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN MI GY+ + + E A+ ++ + G+K D T VA+L+ CSH+GLV +
Sbjct: 472 GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 531
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
F +M D+ V P C+ MP++ D +WG L+ + +VH
Sbjct: 532 YFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVH 591
Query: 147 SNVRLAKKAA 156
N LA+ AA
Sbjct: 592 GNTELAETAA 601
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 51 CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
C TWN MI GYA+ + +A +L+ + K D V++ A++ S SG + +
Sbjct: 340 CRNVSTWNTMITGYAQCGKISEAKNLFDKM----PKRDPVSWAAMIAGYSQSGHSFEALR 395
Query: 111 IFNSMEHD 118
+F ME +
Sbjct: 396 LFVQMERE 403
>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
[Vitis vinifera]
Length = 781
Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T++LS+CA+L +L LG+ + I ++ + ++IFV +A I++Y CG
Sbjct: 405 VRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQ 464
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI GY + Y +A++L+ +++ S V GVTF+++L CSH+G
Sbjct: 465 RLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAG 524
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV EIF SM HDH +P C+ MP + VWG L
Sbjct: 525 LVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGAL 584
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C +H + LA+ A+
Sbjct: 585 LGACMIHKDANLARLAS 601
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI GYA+N E+AISL++++ V+ + VT +IL+ C+ G
Sbjct: 376 SWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLG 423
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 17/79 (21%)
Query: 35 GYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQAISLY 77
G+G+D+FVGSA + Y V WN M+ G +N ++AI ++
Sbjct: 136 GFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIF 195
Query: 78 KDIIASGVKHDGVTFVAIL 96
D++ G+ D T A+L
Sbjct: 196 GDMVKGGIGFDSTTVAAVL 214
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 17/103 (16%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
VL A+L L LG I +K G+ + +V + +Y CG
Sbjct: 213 VLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPD 272
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V++N MI GY N E ++ L+K+++ SG K + + V ++
Sbjct: 273 LVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315
>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 748
Score = 112 bits (279), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q F LS+CA L++L +G Q+ I+K GY ND+FVG+A I +Y CG
Sbjct: 454 PDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQV 513
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +I GYA N Y +A ++ + + V D VTF+ +L+ CSH+GL
Sbjct: 514 FRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLA 573
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
++IF M D ++P CL M K + +WG L+
Sbjct: 574 NQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLG 633
Query: 142 SCQVHSNVRLAKKAA 156
+C+VH N+ L + AA
Sbjct: 634 ACRVHKNLELGRFAA 648
>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
Length = 440
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P Q VLS+CA+L+ L G+Q+ +K G G+ + V ++ +++Y CG
Sbjct: 64 IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDAN 123
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TW +I GYA+N ++++ Y B+IASGVK D +TF+ +L CSH+G
Sbjct: 124 KVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAG 183
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F SME + +KP C+ M + D VW L
Sbjct: 184 LVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKAL 243
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+VH NV L ++AA
Sbjct: 244 LAACRVHGNVELGERAA 260
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 111 bits (278), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F ++L++CA L +L LG + T I K+ ND FVG+A I++Y CG
Sbjct: 336 VKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAK 395
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW MI G A N + E+A++++ ++I + + D +T++ +L C+H+G
Sbjct: 396 KVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAG 455
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V F SM H +KP C+ MP K + +VWG L
Sbjct: 456 MVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSL 515
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH NV+LA+ AA
Sbjct: 516 LGACRVHKNVQLAEMAA 532
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F F +L + +L G+ +L VK G+ +++FV A I+++ C
Sbjct: 103 IKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLAR 162
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTWN M+ GY + +++ L+ ++ GV + VT V +L+ CS
Sbjct: 163 KVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACS 219
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 18/96 (18%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAEN 67
+T++++ A + + L R+ +I + Y V+W MI GY
Sbjct: 277 WTSIVTGFANIGQIDLARKYFDQIPERDY------------------VSWTAMIDGYLRM 318
Query: 68 EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+A++L++++ S VK D T V+ILT C+H G
Sbjct: 319 NRFIEALALFREMQMSNVKPDEFTMVSILTACAHLG 354
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS-GLVYAEVEIFNSM 115
WN MI GY+ + + +S+Y ++AS +K D TF +L + + L Y +V + +++
Sbjct: 75 WNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAV 134
Query: 116 EH 117
+H
Sbjct: 135 KH 136
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT+F +VLS+C ++ L G+Q+ ++ G + V SA IN+YC CG
Sbjct: 417 PTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRI 476
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI+GYAE+ Y + I L++ I G++ D VTF+ +L+ CSH+GLV
Sbjct: 477 FDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLV 536
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
FN+M +++ P C+ MP+ D VVW L+
Sbjct: 537 DLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLR 596
Query: 142 SCQVHSNVRLAKKAA 156
+C+VH +V ++ A
Sbjct: 597 ACRVHGDVERGRRTA 611
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F V+S CA L+ + G Q+ I+ G + V ++ + +Y CG
Sbjct: 314 VSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSS 373
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W+ +I GY++ +V +A L + G K ++L+ C +
Sbjct: 374 VIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMA 433
Query: 104 LV 105
++
Sbjct: 434 IL 435
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 19/124 (15%)
Query: 7 PFTTVLS--SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
PF L+ +C S + G + VK G N +FVGSA +++Y G
Sbjct: 116 PFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFH 175
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+W +I G Y ++A+ + ++ S V++D TF L C+ SG +
Sbjct: 176 EMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNY 235
Query: 108 EVEI 111
EI
Sbjct: 236 GREI 239
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F L +CA +L GR+I + +K G+ FV + +Y CG
Sbjct: 218 YTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEK 277
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W +I + E A+ + + S V + TF A+++ C++
Sbjct: 278 MSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCAN 330
>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 766
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
FT+ LS+CA++++L LG+Q+ R+VK G + +VG+A + +YC CG
Sbjct: 397 FTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE 456
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN MI GYA + + ++A+ L++ + +G+ D VT V +L+ CSH+GLV E
Sbjct: 457 EKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTE 516
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
F SM D+ + C+ MP++ D WG L+ + ++H
Sbjct: 517 YFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIH 576
Query: 147 SNVRLAKKAA 156
N L +KAA
Sbjct: 577 GNTELGEKAA 586
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 51 CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
C +WN MI GYA+N + QA + + + + D +++ AI+ + SG +
Sbjct: 325 CQNVSSWNTMITGYAQNGDIAQARNFFDRM----PQRDSISWAAIIAGYAQSGYGEEALH 380
Query: 111 IFNSMEHDHE 120
+F M+ D E
Sbjct: 381 LFVEMKRDGE 390
>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
Length = 822
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F +++S+ A + L G+Q+ +K G+G+D FV ++ +++Y CG
Sbjct: 453 FASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELK 512
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
++W MI G A++ Y E+A+SL+ D+I +GVK + VT++A+L+ CSH GLV E
Sbjct: 513 DRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKE 572
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
F SM+ DH + P+ C+ MP K D +VW L+ +C+ H
Sbjct: 573 YFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSH 632
Query: 147 SNVRLAKKAA 156
N+ + + AA
Sbjct: 633 DNIEVGEIAA 642
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 48/151 (31%)
Query: 36 YGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQAISLYK 78
+G DI VGSA I++ G V W +I Y + E E+A+ ++
Sbjct: 184 WGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFL 243
Query: 79 DIIASGVKHDGVTFVAILTPCSHSGLV----------------------------YAEVE 110
D + G + D T ++++ C+ G V YA+
Sbjct: 244 DFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSN 303
Query: 111 IFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
I +M++ ++V + K+D++ W L+S
Sbjct: 304 IEQAMDYANKVFERM---RKNDVISWTALIS 331
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P ++ ++++S+C +L S+ LG Q+ + ++ G+ +D V +++Y +
Sbjct: 252 PDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNI------- 304
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
EQA+ + K+D +++ A+++ SG+ +V + + +K
Sbjct: 305 --------EQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIK 356
Query: 123 PKCLMPYKDDLVVWGDLV---SSCQVHSNVRLAKKAA 156
P + Y L ++ S QVH++V + +AA
Sbjct: 357 PNHI-TYSSILKACANISDHDSGRQVHAHVIKSNQAA 392
>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P+ +VLS C L+SL GRQ+ +++V+ + DI+V S I +Y CG
Sbjct: 193 VRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAK 252
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I GYA++ + E+A+ ++ D+ +S + D +TF+ +L+ CS++G
Sbjct: 253 RVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTG 312
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
V +EIF SM+ ++V PK C+ MP + D +VWG L
Sbjct: 313 KVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGAL 372
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ H N+ LA+ AA
Sbjct: 373 LGACRTHKNLDLAEIAA 389
>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Glycine max]
Length = 815
Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 103/190 (54%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ ++L +CA L+SL LG+Q+ +RI++ G +++F GSA +++Y CG
Sbjct: 445 YASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMP 504
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN +I YA+N A+ ++ +I SG++ + V+F++IL CSH GLV ++
Sbjct: 505 VRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQ 564
Query: 111 IFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVSSCQVH 146
FNSM ++++P+ MP++ D ++W +++SC++H
Sbjct: 565 YFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIH 624
Query: 147 SNVRLAKKAA 156
N LA KAA
Sbjct: 625 KNQELAIKAA 634
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC----------- 53
QFPF T+LS A +L +GRQI ++ + +++ VG++ +++Y C
Sbjct: 341 QFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFA 400
Query: 54 ------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V W +I GY + E + L+ ++ + + D T+ +IL C++
Sbjct: 401 DLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACAN 454
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 61/114 (53%), Gaps = 18/114 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P++F F VL++ ++ + G+Q+ + +VK + ++FV +A ++ Y
Sbjct: 238 PSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFY------------ 285
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116
++++ + +A L+ ++ + DG+++ ++T C+ +G V +E+F ++
Sbjct: 286 --SKHDRIVEARKLFYEM----PEVDGISYNVLITCCAWNGRVEESLELFRELQ 333
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 22/137 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P T+LS + S+ Q+ +VK GY + + V ++ ++ YC
Sbjct: 137 PDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHL 196
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VT+N ++ GY++ + AI+L+ + G + TF A+LT +G+
Sbjct: 197 FKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLT----AGIQ 252
Query: 106 YAEVEIFNSMEHDHEVK 122
++E F H VK
Sbjct: 253 MDDIE-FGQQVHSFVVK 268
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
VTW +I GYA++ +A +L+ D+ G+ D +T +L+ + E E N
Sbjct: 105 VTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSG-------FTEFESVNE 157
Query: 115 ME--HDHEVKPKCLMPYKDDLVVWGDLVSS-CQVHS 147
+ H H VK + Y L+V L+ S C+ S
Sbjct: 158 VAQVHGHVVK----VGYDSTLMVCNSLLDSYCKTRS 189
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT+F +VLS+C ++ L G+Q+ ++ G + V SA IN+YC CG
Sbjct: 417 PTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRI 476
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI+GYAE+ Y + I L++ I G++ D VTF+ +L+ CSH+GLV
Sbjct: 477 FDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLV 536
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
FN+M +++ P C+ MP+ D VVW L+
Sbjct: 537 DLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLR 596
Query: 142 SCQVHSNVRLAKKAA 156
+C+VH +V ++ A
Sbjct: 597 ACRVHGDVERGRRTA 611
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 17/122 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F V+S CA L+ + G Q+ I+ G + V ++ + +Y CG
Sbjct: 314 VSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSS 373
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W+ +I GY + +V +A L + G K ++L+ C +
Sbjct: 374 VIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMA 433
Query: 104 LV 105
++
Sbjct: 434 IL 435
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 19/124 (15%)
Query: 7 PFTTVLS--SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
PF L+ +C S + G + VK G N +FVGSA +++Y G
Sbjct: 116 PFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFH 175
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+W +I G Y ++A+ + ++ S V++D TF L C+ SG +
Sbjct: 176 EMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNY 235
Query: 108 EVEI 111
EI
Sbjct: 236 GREI 239
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F L +CA +L GR+I + +K G+ FV + +Y CG
Sbjct: 218 YTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEK 277
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W +I + E A+ + + S V + TF A+++ C++
Sbjct: 278 MSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCAN 330
>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
Length = 685
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
FT+ LS+CA++++L LG+Q+ R+VK G + +VG+A + +YC CG
Sbjct: 316 FTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIE 375
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN MI GYA + + ++A+ L++ + +G+ D VT V +L+ CSH+GLV E
Sbjct: 376 EKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTE 435
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
F SM D+ + C+ MP++ D WG L+ + ++H
Sbjct: 436 YFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIH 495
Query: 147 SNVRLAKKAA 156
N L +KAA
Sbjct: 496 GNTELGEKAA 505
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 51 CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
C +WN MI GYA+N + QA + + + + D +++ AI+ + SG +
Sbjct: 244 CQNVSSWNTMITGYAQNGDIAQARNFFDRM----PQRDSISWAAIIAGYAQSGYGEEALH 299
Query: 111 IFNSMEHDHE 120
+F M+ D E
Sbjct: 300 LFVEMKRDGE 309
>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 621
Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 41/189 (21%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
+TVLS CA+L++L LGR+I +V+ N+I VG+ +N+Y CG
Sbjct: 322 STVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHMIFEKTER 381
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
++WN MI GY + A+ + +I G K DGVTFVA+L+ CSHSGLV+ +
Sbjct: 382 KDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKPDGVTFVAVLSSCSHSGLVHEGRRL 441
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F+ M + ++P+ C+ MP + VWG L++SC++H+
Sbjct: 442 FDQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMPVAPNACVWGALLNSCRMHN 501
Query: 148 NVRLAKKAA 156
N +A++ A
Sbjct: 502 NTEIAEETA 510
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 17/128 (13%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F V+ +CA + S LG+ I +++ G+ + + VG+ I +Y G
Sbjct: 43 FTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRDARHLFDR 102
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
++WN M+ YA N A+ +++ + + G++ + VT+ ++++ + SG
Sbjct: 103 MSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYARSGWHEEA 162
Query: 109 VEIFNSME 116
+E+F M
Sbjct: 163 MELFGLMR 170
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 21/132 (15%)
Query: 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------ 54
V+S CA L + + I VK G+ FV SA I +Y G
Sbjct: 180 ALAVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEM 239
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASG----VKHDGVTFVAILTPCSHSGLV 105
+WN +I +AE ++A+ ++ + SG ++ + V++ AI+ + G
Sbjct: 240 KNKSLASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGRE 299
Query: 106 YAEVEIFNSMEH 117
+E+F M+H
Sbjct: 300 KEALELFRRMQH 311
>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 694
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ LS+CA L++L +GRQ + + + GY D F G+A I+ Y CG
Sbjct: 453 YACCLSACADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMP 512
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN +I GYA N + +AIS+++++ + V+ D VTFV +L+ CSH+GL+ +
Sbjct: 513 APDIVSWNALIDGYASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHAGLIDEGFD 572
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
FNSM D+ ++P C+ M + + VWG ++ +C+VH
Sbjct: 573 FFNSMTKDYALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPNAGVWGAMLGACRVH 632
Query: 147 SNVRLAKKAA 156
N LA+ AA
Sbjct: 633 KNHELAQLAA 642
>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
[Solanum demissum]
Length = 819
Score = 110 bits (274), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 100/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+ Q F + L + A L+S+ LG+Q+ + +++ G + +F GS +++Y NCG
Sbjct: 442 VHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAI 501
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I Y++N E S + D+I SG+ D V+F+++LT CSH G
Sbjct: 502 EVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRG 561
Query: 104 LVYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDL 139
LV + FNSM +++ P+ MP++ D V+W +
Sbjct: 562 LVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSV 621
Query: 140 VSSCQVHSNVRLAKKAA 156
++SC++H N LAKKAA
Sbjct: 622 LNSCRIHKNQDLAKKAA 638
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------------ 53
FPF T+LS A +L +GRQ + V +++ VG+A +++Y C
Sbjct: 346 FPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFAN 405
Query: 54 -----GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V W +I Y + + E+A+ ++K++ V D TF + L ++
Sbjct: 406 LAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASAN 458
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 48 NIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
+++ V+W MI GY++N ++A +LY ++ SGVK D +TF +L+ + +
Sbjct: 102 SMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKE 161
Query: 108 EVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSS 142
++I H H ++ + L+V+ LV S
Sbjct: 162 VLQI-----HSHIIR----FGFSASLIVFNSLVDS 187
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 17/112 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCN---------- 52
P+ F F +L + G+QI +K Y DIFV +A ++ Y
Sbjct: 242 PSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNL 301
Query: 53 -------CGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
GV++N +I GYA N E++ L+K + + F +L+
Sbjct: 302 FDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLS 353
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 69/170 (40%), Gaps = 26/170 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P F T+LS ++L QI + I++ G+ + V ++ ++ YC
Sbjct: 139 VKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIAS 198
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N MI GY + + E+A+ L+ + + G TF A+L
Sbjct: 199 QLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMS---- 254
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAK 153
V +E IF H +K Y D+ V L+ H + LAK
Sbjct: 255 -VGSEDVIFGQQIHGLAIKT----SYVWDIFVANALLDFYSKHDYIDLAK 299
>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 907
Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q F LSSCA L++L +G+Q+ I+K GY ND+FV +A I +Y CG
Sbjct: 454 PDQSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKV 513
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +I GYA N Y +A ++ + + G D VTF+ +L+ CSH+GL
Sbjct: 514 FKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLT 573
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
V++F M ++P CL M K + +WG L++
Sbjct: 574 NQGVDLFKCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLA 633
Query: 142 SCQVHSNVRLAKKAA 156
+C+VH N+ L K AA
Sbjct: 634 ACRVHKNMELGKIAA 648
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+WN MI GY N VE+A L+ D++A + D ++ ++T + G++ E+F
Sbjct: 80 VSWNTMIAGYLHNNMVEEAHKLF-DLMA---ERDNFSWALMITCYTRKGMLEKARELFE- 134
Query: 115 MEHDHEVKPKCLMPYKDDLVVWGDLVS 141
L+P K D W +++
Sbjct: 135 -----------LVPDKLDTACWNAMIA 150
>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
Length = 701
Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ + L +CA L++L +GRQ+ + +V+ G+ ND+F +A I+ Y CG
Sbjct: 460 YASCLRACANLAALHVGRQLHSLLVRSGHINDLFARNALISTYAKCGRMLEAKQIFDEMV 519
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN ++ GYA N +AIS+++++ A+GV+ D VTFV IL+ CS +GL+ +
Sbjct: 520 GKDIVSWNALVDGYASNGQGTEAISVFREMEANGVRPDEVTFVGILSACSRAGLIDEGLG 579
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
FNSM ++ +KP C+ M + + VWG L+ +CQ++
Sbjct: 580 FFNSMTEEYSLKPVAEHYACMADLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACQMY 639
Query: 147 SNVRLAKKAA 156
N LA+ AA
Sbjct: 640 KNHELARLAA 649
Score = 38.5 bits (88), Expect = 0.90, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 21/110 (19%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYA 65
F +T ++S A+ L L R +L R+ D C +N MI GYA
Sbjct: 112 FSWTVMVSCYARAGELELARDVLDRMPGD-----------------KCTACYNAMISGYA 154
Query: 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
+N + A+ L +++ A D ++ + L + SG + V+ F+ M
Sbjct: 155 KNGRFDDAVKLLREMPAP----DLFSWNSALAGLTQSGQMVRAVQFFDEM 200
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 109 bits (273), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + VLS+CA+L S LG QI I ++GSA I++Y CG
Sbjct: 404 PNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSV 463
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN MI G A N + E AI+LY+ ++ G++ + VTFVA+LT C+H+GLV
Sbjct: 464 FNRMEQKVVVTWNSMIRGLALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLV 523
Query: 106 YAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVS 141
+ F M+ V P+ C M + + V+W L+S
Sbjct: 524 DKGIAFFEEMKKKQHVSPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLS 583
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H++V LAK AA
Sbjct: 584 ACRAHADVELAKLAA 598
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 18/131 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TTV S CAK L GR+ I ++ N + V +A + +Y C
Sbjct: 304 PNAITITTVFSICAKTGDLDTGRRARAWIREEDLQN-VIVHTALMEMYVKCRAIDEARHE 362
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V W+ MI GY++N +++ L++ + A+ K + VT V +L+ C+ G
Sbjct: 363 FDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 422
Query: 106 YAEVEIFNSME 116
+I N +E
Sbjct: 423 ELGEQIGNYIE 433
>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
Length = 822
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F +++S+ A + L G+Q+ +K G+G+D FV ++ +++Y CG
Sbjct: 453 FASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELK 512
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
++W MI G A++ Y E+A+SL+ D+I +GVK + VT++A+L+ CSH GLV E
Sbjct: 513 DRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKE 572
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
F SM+ DH + P+ C+ MP K D +VW L+ +C+ H
Sbjct: 573 YFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSH 632
Query: 147 SNVRLAKKAA 156
N+ + + A
Sbjct: 633 DNIEVGEITA 642
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 48/151 (31%)
Query: 36 YGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQAISLYK 78
+G D+ VGSA I++ G V W +I Y + E E+A+ L+
Sbjct: 184 WGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFL 243
Query: 79 DIIASGVKHDGVTFVAILTPCSHSGLV----------------------------YAEVE 110
D + G + D T ++++ C+ G V YA+
Sbjct: 244 DFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSN 303
Query: 111 IFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
I +M++ ++V + MP K+D++ W L+S
Sbjct: 304 IGQAMDYANKVFER--MP-KNDVISWTALIS 331
Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54
+ P ++++L SCA +S GRQ+ ++K + VG+A +++Y G
Sbjct: 355 IKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESG 408
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 108 bits (270), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 102/197 (51%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + TV+S+CA L +L LG++I I++ G+ D+++GSA I++Y CG
Sbjct: 239 ISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSL 298
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN +I G A + Y E+A++++ + +K +GVTFV++L+ C+H+G
Sbjct: 299 LMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAG 358
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L+ + F SM DH + P C+ M + + V+WG L
Sbjct: 359 LIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWGAL 418
Query: 140 VSSCQVHSNVRLAKKAA 156
+S C++H N+ +A+ AA
Sbjct: 419 LSGCKLHRNLEIAQVAA 435
>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1125
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 102/190 (53%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +++ +CA L+SL LG+Q+ + I+ GY +++F GSA +++Y CG
Sbjct: 504 YASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMP 563
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN +I YA+N + + L+++++ SG++ D V+ ++IL CSH GLV ++
Sbjct: 564 VRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQ 623
Query: 111 IFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVSSCQVH 146
F+SM +++ PK MP++ D ++W +++SC +H
Sbjct: 624 YFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIH 683
Query: 147 SNVRLAKKAA 156
N LAKKAA
Sbjct: 684 KNQELAKKAA 693
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 17/112 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
FPF T+LS A +L +GRQI ++ + ++I VG++ +++Y CG
Sbjct: 401 FPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSD 460
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W MI Y + E + L+ ++ + + D T+ +I+ C+
Sbjct: 461 LAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACA 512
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
PT+F F +L++ +L + G+Q+ +VK + ++FV +A ++ Y
Sbjct: 297 PTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKL 356
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
G+++N ++ YA N V++++ L+K++ +G F +L+
Sbjct: 357 FYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLS 408
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P T+LS + S+ RQ+ + ++K GY + + V ++ ++ YC
Sbjct: 196 PDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQL 255
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VT+N ++ GY++ + +AI+L+ + G + TF AILT +G+
Sbjct: 256 FNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILT----AGIQ 311
Query: 106 YAEVEIFNSMEHDHEVK 122
++E F H VK
Sbjct: 312 LDDIE-FGQQVHGFVVK 327
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 48 NIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
+++ VTW +I GYA+N +A L+ ++ G+ D V+ +L+ +
Sbjct: 157 SMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSG-------FT 209
Query: 108 EVEIFNSME--HDHEVKPKCLMPYKDDLVVWGDLVSS-CQVHS 147
E + N + H H +K + Y LVV L+ S C+ S
Sbjct: 210 EFDSVNEVRQVHSHVIK----LGYDSTLVVSNSLLDSYCKTRS 248
>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 707
Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 42/192 (21%)
Query: 6 FP-FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
FP +VLS CA L+SL GRQ+ R+V+ + D++V S I +Y CG
Sbjct: 335 FPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFN 394
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V WN MI GY+++ E+A++++ D+ +SGV+ D VTF+ +L+ CS+SG V
Sbjct: 395 RFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKE 454
Query: 108 EVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSC 143
EIF +M+ ++V+P C+ MP + D +VWG L+ +C
Sbjct: 455 GFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGAC 514
Query: 144 QVHSNVRLAKKA 155
+ H + LA+ A
Sbjct: 515 RNHMKLDLAEVA 526
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 96/198 (48%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P QF F++ L +CA ++SL G+QI +++ + + V SA I++Y CG
Sbjct: 320 VRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGR 379
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V WN +I A++ E+AI + D++ SG K D +TFV IL CSHS
Sbjct: 380 KVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHS 439
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV + F SM D+ + P CL MPYK D VW
Sbjct: 440 GLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNA 499
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ C++H ++ L +KAA
Sbjct: 500 LLGVCRIHGHIELGRKAA 517
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 22/135 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F VL+ C KL + L RQ+ +I+ G+ +++ + S+ ++ Y CG
Sbjct: 193 FSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDE 252
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+ W M+ GYA+ ++ A L+ ++ + + V++ A+++ + +G+ +
Sbjct: 253 MSARDVLAWTTMVSGYAKWGDMKSANELFVEM----PEKNPVSWTALISGYARNGMGHKA 308
Query: 109 VEIFNSMEHDHEVKP 123
+E+F M H V+P
Sbjct: 309 LELFTKMMLFH-VRP 322
>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g16835, mitochondrial; AltName: Full=Protein DYW10;
Flags: Precursor
gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 656
Score = 108 bits (269), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P ++ L C++LS+L LGRQI + K ND+ ++ I++YC CG
Sbjct: 280 IRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAW 339
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ ++A+ L++++I + ++ D +TFVA+L C+H+G
Sbjct: 340 KLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAG 399
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F SM D++V+P+ C+ MP++ V+G L
Sbjct: 400 LVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTL 459
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH NV LA+ AA
Sbjct: 460 LGACRVHKNVELAEFAA 476
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTWN MI GY EN E + L++ ++ G++ + + L CS
Sbjct: 250 VTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCS 295
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 99/196 (50%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+P VLSSCA L + +G ++ +I G+ ++ F+ +A IN+Y CG
Sbjct: 249 VHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQ 308
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I GY + + E A+ L+K++I SG++ DG FV +L+ CSH+G
Sbjct: 309 AVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAG 368
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L +E F M+ +++++P C+ MP K D VWG L
Sbjct: 369 LTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGAL 428
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C++H NV LA+ A
Sbjct: 429 LGACKIHKNVELAELA 444
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
++ +C +L LG + +K G+ +D+ V + I +Y CG
Sbjct: 158 LIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKG 217
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN M+ GYA+N + LY+++ +GV D VT V +L+ C++ G
Sbjct: 218 LISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLG 267
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F L SCA LS LG Q +I K G + FV + I++YC
Sbjct: 47 PNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKV 106
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V +N ++ GY N +A+ L++ + GV + VT + ++ C
Sbjct: 107 FEENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPAC 162
>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
Length = 685
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 47/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG------NDIFVGSAPINIYCNCG 54
V+PT + + VL++CA L++L LG+Q ++K+G+ +D+FVG++ +++Y G
Sbjct: 377 VWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTG 436
Query: 55 -----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI GYA+N + A+ L++ ++ S + D VT + +L+
Sbjct: 437 SISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLS 496
Query: 98 PCSHSGLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDL 133
C HSGLV F SM DH + P C+ MP + D
Sbjct: 497 ACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDA 556
Query: 134 VVWGDLVSSCQVHSNVRLAKKAA 156
V+W L+ +C++H N+ + + AA
Sbjct: 557 VLWASLLGACRLHKNIDMGEWAA 579
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 58/112 (51%), Gaps = 17/112 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F + LS+CA + G Q+ + K +G+D+++G+A +++Y C
Sbjct: 148 YSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDA 207
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I Y +N V++A++L+ ++ G D VT ++++ C+
Sbjct: 208 MPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACA 259
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 31/171 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCGVTW---- 57
P + +V+S+CA L++ GRQ+ TR+VK D + D+ + +A +++Y CG TW
Sbjct: 246 PDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKC 305
Query: 58 -------------NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
MI GYA++ V A +++ ++ V V + ++ +H+
Sbjct: 306 VFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNV----VAWNVLIATYAHNSE 361
Query: 105 VYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155
+ +F + K + + P +G+++++C +N++L ++A
Sbjct: 362 EEEALRLFVRL------KRESVWPTH---YTYGNVLNACANLANLQLGQQA 403
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F LS+CA +++L LG+QI + VK GYG FVG+A + +Y CG
Sbjct: 397 FGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIE 456
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN M+ GYA + + QA+++++ + +GVK D +T V +L+ CSH+GL+ E
Sbjct: 457 EKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTE 516
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
F SM D+ V P C+ MP++ WG L+ + ++H
Sbjct: 517 YFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIH 576
Query: 147 SNVRLAKKAA 156
N L +KAA
Sbjct: 577 GNTELGEKAA 586
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+WN ++ GYA+N YV++A ++ ++ + + +++ +L H+G + +F S
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLLAAYVHNGRIEEACLLFES 198
Query: 115 MEHDHEVKPKCLM 127
+ CLM
Sbjct: 199 KSDWDLISWNCLM 211
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 107 bits (268), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F LS+CA +++L LG+QI + VK GYG FVG+A + +Y CG
Sbjct: 397 FGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIE 456
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN M+ GYA + + QA+++++ + +GVK D +T V +L+ CSH+GL+ E
Sbjct: 457 EKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTE 516
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
F SM D+ V P C+ MP++ WG L+ + ++H
Sbjct: 517 YFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIH 576
Query: 147 SNVRLAKKAA 156
N L +KAA
Sbjct: 577 GNTELGEKAA 586
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+WN ++ GYA+N YV++A ++ ++ + + +++ +L H+G + +F S
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNM----PEKNSISWNGLLAAYVHNGRIEEACLLFES 198
Query: 115 MEHDHEVKPKCLM 127
+ CLM
Sbjct: 199 KSDWDLISWNCLM 211
>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 641
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F + VL +CA+ + GRQ+ R+ K G G+ F SA + +Y CG
Sbjct: 265 VRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAV 324
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I GYA+N E+A+ + + SG+K D VTFV +L+ C+H+G
Sbjct: 325 RVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAG 384
Query: 104 LVYAEVEIFNS------MEH--DH--------------EVKPKCL--MPYKDDLVVWGDL 139
LV +EIF+S +EH DH E K + M K + +W L
Sbjct: 385 LVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASL 444
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C++H NV LA++AA
Sbjct: 445 LGGCRIHKNVGLARRAA 461
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 107 bits (267), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 95/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +VLS+CA+L S+ G +I + + G ++++V SA + +Y CG
Sbjct: 103 IKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKAR 162
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI G A N + E AI+LY + VK + +TFV +LT C+H+G
Sbjct: 163 QIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAG 222
Query: 104 LVYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDL 139
V +E F SM DH + P C M + ++V+WG L
Sbjct: 223 HVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTL 282
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+ ++H NV LA+ A
Sbjct: 283 LSASRIHLNVELAELAG 299
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 17/120 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + TVLS CAKL L +G +I G+++ V +A + +Y CG
Sbjct: 4 PBEITLATVLSICAKLGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLV 63
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V W+ MI GYA+N +A+ L++ + ++ +K + VT V++L+ C+ G V
Sbjct: 64 FDHMARRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGSV 123
>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
Length = 1198
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 103/195 (52%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +VL++C+ L+SL GR+ ++K GY + I + +A I +YC CG
Sbjct: 225 PDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELA 284
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI +A + + ++A++ + ++ ++ V+ DG+TF+++L+ C H+G V
Sbjct: 285 FRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKV 344
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ + FNSM +++ P+ CL MP++ D +WG L++
Sbjct: 345 HESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLA 404
Query: 142 SCQVHSNVRLAKKAA 156
+C VH NV+L + AA
Sbjct: 405 ACHVHLNVKLGELAA 419
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 49 IYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
I C +WN MI GYA+N E+A+ L+ ++ G++ D T +++LT CS
Sbjct: 187 IPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACS 238
>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
Length = 703
Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F + VL +CA+ + GRQ+ R+ K G G+ F SA + +Y CG
Sbjct: 265 VRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAV 324
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I GYA+N E+A+ + + SG+K D VTFV +L+ C+H+G
Sbjct: 325 RVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAG 384
Query: 104 LVYAEVEIFNS------MEH--DH--------------EVKPKCL--MPYKDDLVVWGDL 139
LV +EIF+S +EH DH E K + M K + +W L
Sbjct: 385 LVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASL 444
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C++H NV LA++AA
Sbjct: 445 LGGCRIHKNVGLARRAA 461
>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
gi|194704572|gb|ACF86370.1| unknown [Zea mays]
gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
Length = 700
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 62/190 (32%), Positives = 98/190 (51%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ + L +CA L+ L +GRQ+ +V+ G+ ND F G+A I+ Y CG
Sbjct: 459 YASCLRACANLAVLHVGRQLHNLLVRSGHINDSFAGNALISTYAKCGRILEAKQIFDEMV 518
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN +I GYA N +AI++++++ A+GV+ D VTFV IL+ CSH+GL+ +
Sbjct: 519 YKDIVSWNALIDGYASNGQGTEAIAVFREMEANGVRPDEVTFVGILSACSHAGLIDEGLF 578
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
F SM ++ +KP C+ M + + VWG L+ +C +H
Sbjct: 579 FFYSMTKEYLLKPVAEHYACMVDLLGRAGKLNEAFELVQGMQIQPNAGVWGALLGACHMH 638
Query: 147 SNVRLAKKAA 156
N LA+ AA
Sbjct: 639 KNHELAQLAA 648
Score = 40.4 bits (93), Expect = 0.23, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 21/114 (18%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGY 64
+F +T ++S A+ L L R +L R+ D C +N MI GY
Sbjct: 111 EFSWTVMVSCYARGGDLELARDVLDRMPGD-----------------KCTACYNAMISGY 153
Query: 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118
A+N + A+ L +++ A D V++ + L + SG + V+ F+ M D
Sbjct: 154 AKNGRFDDAMKLLREMPAP----DLVSWNSALAGLTQSGEMVRAVQFFDEMVKD 203
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 99/196 (50%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+P VLSSCA L + +G ++ ++ G+ ++ F+ +A IN+Y CG
Sbjct: 240 VHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQ 299
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I GY + + E A+ L+K++I SG++ DG FV +L+ CSH+G
Sbjct: 300 AVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAG 359
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L +E F M+ +++++P C+ MP K D VWG L
Sbjct: 360 LTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGAL 419
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C++H NV LA+ A
Sbjct: 420 LGACKIHKNVELAELA 435
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
++ +C +L LG + +K G+ +D+ V + I +Y CG
Sbjct: 149 LIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKG 208
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN M+ GYA+N + LY+++ +GV D VT V +L+ C++ G
Sbjct: 209 LISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLG 258
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F L SCA LS LG Q +I K G + FV + I++YC
Sbjct: 38 PNAFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKV 97
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V +N ++ GY N A+ L++ + GV + VT + ++ C
Sbjct: 98 FEENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPAC 153
>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 755
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F VLS+CA +++L G Q+ R+++ GYG FVG+A + +Y CG
Sbjct: 386 FACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEME 445
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN MI GYA + + ++A+ ++ + + K D +T V +L CSHSGLV +
Sbjct: 446 ERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGIS 505
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
F SM HD V K C+ MP++ D +WG L+ + ++H
Sbjct: 506 YFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIH 565
Query: 147 SNVRLAKKAA 156
N L + AA
Sbjct: 566 RNPELGRSAA 575
>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
Length = 739
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F VLS+CA +++L G Q+ R+++ GYG FVG+A + +Y CG
Sbjct: 386 FACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEME 445
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN MI GYA + + ++A+ ++ + + K D +T V +L CSHSGLV +
Sbjct: 446 ERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGIS 505
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
F SM HD V K C+ MP++ D +WG L+ + ++H
Sbjct: 506 YFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIH 565
Query: 147 SNVRLAKKAA 156
N L + AA
Sbjct: 566 RNPELGRSAA 575
>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
Length = 630
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F VLS+CA +++L G Q+ R+++ GYG FVG+A + +Y CG
Sbjct: 261 FACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEME 320
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN MI GYA + + ++A+ ++ + + K D +T V +L CSHSGLV +
Sbjct: 321 ERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGIS 380
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
F SM HD V K C+ MP++ D +WG L+ + ++H
Sbjct: 381 YFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIH 440
Query: 147 SNVRLAKKAA 156
N L + AA
Sbjct: 441 RNPELGRSAA 450
>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
Length = 755
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F VLS+CA +++L G Q+ R+++ GYG FVG+A + +Y CG
Sbjct: 386 FACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEME 445
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN MI GYA + + ++A+ ++ + + K D +T V +L CSHSGLV +
Sbjct: 446 ERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGIS 505
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
F SM HD V K C+ MP++ D +WG L+ + ++H
Sbjct: 506 YFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIH 565
Query: 147 SNVRLAKKAA 156
N L + AA
Sbjct: 566 RNPELGRSAA 575
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 47/200 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY------GNDIFVGSAPINIYCNCG 54
V+PT + F +L++CA L+ L LGRQ + ++K G+ +D+FVG++ I++Y CG
Sbjct: 381 VWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCG 440
Query: 55 -----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI GYA+N + +A+ ++ ++ SG D VT + +L
Sbjct: 441 SVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLC 500
Query: 98 PCSHSGLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDL 133
CSH+GL+ F SM H + P C+ M + D
Sbjct: 501 ACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDA 560
Query: 134 VVWGDLVSSCQVHSNVRLAK 153
+VWG L+++C+VH N++L +
Sbjct: 561 IVWGSLLAACKVHRNIQLGE 580
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 28/168 (16%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++ F + LS+CA L L LG QI + + + Y +D+++GSA +++Y CG
Sbjct: 150 NEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVF 209
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V+WN +I Y +N V++A+ ++ ++I GV+ D VT ++++ C
Sbjct: 210 DEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSAC------- 262
Query: 107 AEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG---DLVSSCQVHSNVRL 151
A + + H KC +++DL++ D+ + C + R+
Sbjct: 263 ATISAIKEGQQIHARVVKC-DEFRNDLILGNALLDMYAKCNRINEARI 309
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 87/173 (50%), Gaps = 31/173 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCG----- 54
V P + +V+S+CA +S++ G+QI R+VK D + ND+ +G+A +++Y C
Sbjct: 248 VEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEA 307
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+ M+ GYA+ V+ A ++ +++ D +T+ A++ C+ +
Sbjct: 308 RIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVK----DVITWNALIAGCTQN 363
Query: 103 GLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155
G + +F + K + + P +G+L+++C ++++L ++A
Sbjct: 364 GENEEALILFRLL------KRESVWPTH---YTFGNLLNACANLADLQLGRQA 407
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/91 (18%), Positives = 44/91 (48%), Gaps = 17/91 (18%)
Query: 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------ 54
PF+ +L+ CA+ S ++ I+K + ++ F+ + I++Y CG
Sbjct: 21 PFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRM 80
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDI 80
+WN +I + ++ +++ A+ +++ +
Sbjct: 81 LERNIFSWNSIICAFTKSGFLDDAVHIFEKM 111
>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
Length = 865
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + T+ CA L + LG QI+ R VK G D V +A I +Y CG
Sbjct: 500 VRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEAR 559
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY+++ +QAI ++ DI+ G K D +++VA+L+ CSHSG
Sbjct: 560 KVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSG 619
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F+ M+ H + P C+ MP K VWG L
Sbjct: 620 LVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGAL 679
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N LA+ AA
Sbjct: 680 LSACKIHGNNELAELAA 696
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+T+ L++CA+LSSL G+Q+ +++++ D +V SA + +Y CG
Sbjct: 273 YTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLH 332
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V W +I G+ ++ +++ L+ + A + D +++ C
Sbjct: 333 DRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGC 381
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 48/147 (32%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F + SC L L Q+L + K G +D V +A ++++ CG
Sbjct: 136 PNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRL 195
Query: 55 ----------------------------------------VTWNEMIHGYAENEYVEQAI 74
V+WN M+ +++ V +A+
Sbjct: 196 FVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREAL 255
Query: 75 SLYKDIIASGVKHDGVTFVAILTPCSH 101
+ D+ + GV+ D T+ + LT C+
Sbjct: 256 DMVVDMQSKGVRLDSTTYTSSLTACAR 282
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 21/136 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QF T++S C L LGRQ+ + +K G + V ++ I++Y C
Sbjct: 371 QFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFR 430
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+W MI +++ + +A + + V +T+ A+L G
Sbjct: 431 FMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNV----ITWNAMLGAYIQHGAEED 486
Query: 108 EVEIFNSMEHDHEVKP 123
+ ++N M + +V+P
Sbjct: 487 GLRMYNVMLSEKDVRP 502
>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 861
Score = 106 bits (265), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F + TVL +CA L+S LG+QI +++K +D+++ S +++Y CG
Sbjct: 557 ITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSR 616
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI GYA + E+AI L++ +I +K + VTF++IL C+H G
Sbjct: 617 LMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMG 676
Query: 104 LVYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDL 139
L+ +E F M+ D+ + P+ MP++ D V+W L
Sbjct: 677 LIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTL 736
Query: 140 VSSCQVH-SNVRLAKKA 155
+ C +H +NV +A++A
Sbjct: 737 LGVCTIHRNNVEVAEEA 753
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+Q + +VL SCA LS L LG Q+ +K + D V +A +++Y C
Sbjct: 238 SQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILF 297
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++N MI GY++ E+ +A+ L+ +++SG+ D ++ + C+
Sbjct: 298 DKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 351
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 56/138 (40%), Gaps = 38/138 (27%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F F +VL +C SL G +I + IVK G ++ VG + I++Y CG
Sbjct: 437 IEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAE 495
Query: 55 -------------------------------VTWNEMIHGYAENEYVEQAISLYKDIIAS 83
V+WN +I GY E E A L+ ++
Sbjct: 496 KIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEM 555
Query: 84 GVKHDGVTFVAILTPCSH 101
G+ D T+ +L C++
Sbjct: 556 GITPDKFTYATVLDTCAN 573
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN M+ GY +N ++I ++ D+ +G + DG TF IL CS
Sbjct: 104 VSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAIILKVCS 149
>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q+ F++ L +CA +++L G+Q+ +++ + + V S+ I++Y CG
Sbjct: 323 INPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASC 382
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V WN MI A+N + E+A+ ++ D++ SG+K D +TF+ IL+ CSHS
Sbjct: 383 CVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHS 442
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
GLV + F +M +DH V P CL M K D VW
Sbjct: 443 GLVQEGLRFFKAMTYDHGVFPDQEHYSCLIDLLGRAGCFVELVNELENMSCKPDDRVWSA 502
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ C++H+N+ L +K A
Sbjct: 503 LLGVCRIHNNIELGRKVA 520
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/208 (18%), Positives = 74/208 (35%), Gaps = 71/208 (34%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F VL C KL L L +Q+ +++ G+ +++ + S+ ++ Y CG
Sbjct: 196 FSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDE 255
Query: 55 -------------------------------------VTWNEMIHGYAENEYVEQAISLY 77
V+W+ +I GYA N +A+ +
Sbjct: 256 MLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYF 315
Query: 78 KDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDH------------EVKPKC 125
++ G+ + TF + L C+ + ++ + + ++ KC
Sbjct: 316 TKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKC 375
Query: 126 -----------LMPYKDDLVVWGDLVSS 142
LM K D+VVW ++S+
Sbjct: 376 GMLEASCCVFHLMGNKQDVVVWNTMISA 403
>gi|242093560|ref|XP_002437270.1| hypothetical protein SORBIDRAFT_10g023920 [Sorghum bicolor]
gi|241915493|gb|EER88637.1| hypothetical protein SORBIDRAFT_10g023920 [Sorghum bicolor]
Length = 597
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 61/194 (31%), Positives = 99/194 (51%), Gaps = 45/194 (23%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV---------- 55
+ F T+L SC+ LS++ LG++I R ++ D+ V SA +++Y CGV
Sbjct: 348 YSFGTLLRSCSGLSAVKLGKEIHCRFMRMRGCRDVIVESALVDLYAKCGVVEYAYRVFER 407
Query: 56 -------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
TWN MI G A+N + E+AISL+ +++ GVK D ++F+ +L CSH+G+V
Sbjct: 408 SSVRNMITWNAMICGCAQNGHAERAISLFNEMLREGVKPDYISFIGVLFACSHTGMVEEG 467
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
FNSM + + P C++ P++DD +W ++ +C
Sbjct: 468 RNYFNSMSKVYGIPPGIEHYNCIVDLLSRVEFLEEAEDLVNKSPFRDDSSLWAAILGACA 527
Query: 145 VHSN----VRLAKK 154
H+N VR+AKK
Sbjct: 528 THTNPDVAVRVAKK 541
Score = 42.0 bits (97), Expect = 0.087, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P + +CA L L G + +V GYG+D V SA +++Y +
Sbjct: 142 VAPRAHALSASAKACAVLRDLRAGACVHGTVVVRGYGDDGVVLSALVDMYGHSGAPGDAR 201
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKD-IIASGVKHDGVTFVAILT 97
G+ + +I + N++ +A+ ++ ++A GV DG TF +++T
Sbjct: 202 RAFEEMRAPDGICYTSLISAFVRNDWFNEALLWFRAMVVADGVWPDGCTFGSVMT 256
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+P F +V+++ L GR+ ++V G ++ V S+ +++Y CG
Sbjct: 244 VWPDGCTFGSVMTALGNLKRARQGREAHAQVVTRGLCGNVIVESSTLDMYAKCGMMVDAR 303
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W ++ GY ++ E+ +SL++ + D +F +L CS
Sbjct: 304 KVFDRMKVRNAVSWCALLGGYCQSGMHEKVLSLFRQMYME--DDDWYSFGTLLRSCS 358
>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
Length = 703
Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 101/197 (51%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++LS C L+SL GRQ+ +++V+ + DI+V S I +Y CG
Sbjct: 326 VRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGK 385
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I GYA++ + E+A+ ++ ++ +SG D +TF+ +L+ C ++G
Sbjct: 386 RVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTG 445
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
V +EIF SM+ ++V K C+ MP + D +VWG L
Sbjct: 446 KVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGAL 505
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+ H N+ LA+ AA
Sbjct: 506 LSACRTHKNLDLAEIAA 522
>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
lyrata]
gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
lyrata]
Length = 1112
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 98/194 (50%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F F ++LS A + SL G QI ++++K G + V +A I++Y CG
Sbjct: 473 SAFTFASLLSGVANVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMYSKCGSIDTASRVF 532
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++W MI G+A++ + E+ + + + GVK + VT+VAIL+ CSH GLV
Sbjct: 533 SLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVS 592
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
FNSM DH++KPK C+ MP++ D++VW + +
Sbjct: 593 EGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGA 652
Query: 143 CQVHSNVRLAKKAA 156
C+VHSN L K AA
Sbjct: 653 CRVHSNTELGKLAA 666
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 24/119 (20%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F ++V S+CA+L +L LGRQ+ + ++ G +D V + +++Y C
Sbjct: 269 KFTLSSVFSACAELENLSLGRQLHSWAIRSGLADD--VECSLVDMYAKCSADGSVDDCRK 326
Query: 55 ----------VTWNEMIHGYAEN-EYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSH 101
++W +I GY +N +AI+L+ ++I G V+ + TF + C +
Sbjct: 327 VFDRMQDHSVMSWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 19/118 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG------- 54
P + +T V+ +C+ + +GR IL ++K G + +D+ VG + I+++
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTW MI + + +AI + D++ SG + D T ++ + C+
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAE 281
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 20/118 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F+++L SC + LG+ + R+++ D + ++ I++Y G
Sbjct: 65 FSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLTKAKDVFETMG 124
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ M+ + N AI L+ + + G+ + + A++ CS+S V
Sbjct: 125 RFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNSDFV 182
Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F++ +C +S +G+Q+L K G ++ V ++ I+++ C
Sbjct: 369 VEPNHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMFVKCDRMEDAR 428
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N + G N E A L +I + TF ++L+ ++ G
Sbjct: 429 TAFESLSEKNLVSYNTFLDGTCRNLDFEHAFELLSEIAERELGVSAFTFASLLSGVANVG 488
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +VLS+CA+L S+ G +I + + G ++++V SA + +Y CG
Sbjct: 325 IKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKAR 384
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI G A N + E AI+LY + VK + +TFV ++T C+H+G
Sbjct: 385 QIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAG 444
Query: 104 LVYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDL 139
V +E F SM DH + P C M + ++V+WG L
Sbjct: 445 HVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVEPNVVIWGTL 504
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+ ++H NV LA+ A
Sbjct: 505 LSASRIHLNVELAELAG 521
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 17/120 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + TVLS CAKL L +G +I G+++ V +A + +Y CG
Sbjct: 226 PNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLV 285
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW+ MI GYA+N +A+ L++++ ++ +K + VT V++L+ C+ G V
Sbjct: 286 FDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSV 345
Score = 38.5 bits (88), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 18/111 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYA 65
F + SCA L ++ +G+Q+ + +++ G+ + +F +A IN Y I+
Sbjct: 97 FTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAK--------INDLG 148
Query: 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116
E + I L KD IA + +++ S SG V A E+F+ M
Sbjct: 149 SAELIFDGI-LVKDTIA---------YNCLISAYSRSGEVLAARELFDKMR 189
>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g21090-like [Cucumis sativus]
Length = 611
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q+ F++ L +CA +++L G+Q+ +++ + + V S+ I++Y CG
Sbjct: 323 INPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASC 382
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V WN MI A+N + E+A+ ++ D++ SG+K D +TF+ IL+ CSHS
Sbjct: 383 CVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHS 442
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV + F +M +DH V P CL M K D VW
Sbjct: 443 GLVQEGLRFFKAMTYDHGVFPDQEHYACLIDLLGRAGCFVELVNELENMSCKPDDRVWSA 502
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ C++H+N+ L +K A
Sbjct: 503 LLGVCRIHNNIELGRKVA 520
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/208 (18%), Positives = 74/208 (35%), Gaps = 71/208 (34%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F VL C KL L L +Q+ +++ G+ +++ + S+ ++ Y CG
Sbjct: 196 FSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDE 255
Query: 55 -------------------------------------VTWNEMIHGYAENEYVEQAISLY 77
V+W+ +I GYA N +A+ +
Sbjct: 256 MLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYF 315
Query: 78 KDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDH------------EVKPKC 125
++ G+ + TF + L C+ + ++ + + ++ KC
Sbjct: 316 TKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIVVSSLIDMYSKC 375
Query: 126 -----------LMPYKDDLVVWGDLVSS 142
LM K D+VVW ++S+
Sbjct: 376 GMLEASCCVFHLMGNKQDVVVWNTMISA 403
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F ++L++CA L +L LG T I K+ ND F+G+A I++Y CG
Sbjct: 368 VKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAK 427
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW MI G A N + E+A++++ ++ + V D +T++ ++ C+H G
Sbjct: 428 KIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVG 487
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F++M H +KP C+ MP K + +VWG L
Sbjct: 488 LVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSL 547
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH NV+LA+ AA
Sbjct: 548 LGACRVHKNVQLAEMAA 564
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 49/152 (32%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG----- 54
V P +LS+C+KL L G+ I + +K+G ++ + +A I+++ +CG
Sbjct: 235 VSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAA 294
Query: 55 -------------------------------------------VTWNEMIHGYAENEYVE 71
V+W MI GY +
Sbjct: 295 RGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFK 354
Query: 72 QAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ ++L++D+ S VK D T V+ILT C+H G
Sbjct: 355 EVLTLFRDMQMSNVKPDEFTMVSILTACAHLG 386
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 25/163 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCG----- 54
+ P F F +L K +L G+ +L V G+ +++FV I+++ CG
Sbjct: 131 IKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYA 190
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDI--IASGVKHDGVTFVAILTPCS 100
VTWN ++ GY + E++ L+ ++ V + VT V +L+ CS
Sbjct: 191 RKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACS 250
Query: 101 HSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143
+ I+N + V+P ++ ++ L+ D+ +SC
Sbjct: 251 KLKDLVGGKCIYNKYIKEGIVEPNLIL--ENALI---DMFASC 288
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
WN MI GY+ E +SLYK ++ +K DG TF +L
Sbjct: 103 WNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLL 142
>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
Length = 824
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 93/190 (48%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F VLS+CA +++L G Q+ +R++K GYG FVG+A + +Y CG
Sbjct: 455 FACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEME 514
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN MI GYA + + ++A+ ++ + + K D +T V +L CSHSGLV +
Sbjct: 515 ERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGIS 574
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
F SM D V K C+ MP++ D +WG L+ + ++H
Sbjct: 575 YFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIH 634
Query: 147 SNVRLAKKAA 156
N L + AA
Sbjct: 635 RNSELGRNAA 644
>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
Length = 591
Score = 106 bits (264), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F FT+++++CA L+ L G+QI RI++ G ++ + +A I++Y CG
Sbjct: 293 PNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQV 352
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W M+ GY + Y E+A+ L+ ++ SG++ D V F+AIL+ CSH+GLV
Sbjct: 353 FGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLV 412
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F M D+ + P C+ MP+K D VWG +
Sbjct: 413 DEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLG 472
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H+ L K AA
Sbjct: 473 ACKAHTFPNLGKLAA 487
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 18/112 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F+ + +C + S G Q+ + K G+ +++ V ++ +++YC C
Sbjct: 196 FSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYE 255
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+TWN +I GY + E ++ ++ + + G + TF +I+ C+
Sbjct: 256 MNQRDLITWNTLIAGYERSNPTE-SLYVFSMMESEGFSPNCFTFTSIMAACA 306
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 18/119 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P F ++VL +C + L GR + +K G I+V +A +++Y C
Sbjct: 91 PNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACM 150
Query: 54 ---------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I GY + + +++ ++ V+ + +F + C+ G
Sbjct: 151 VFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIG 209
>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
Length = 706
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++L+ CA L+ L GR++ +++ + D+F SA I +Y CG
Sbjct: 329 VRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAK 388
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ EQA+ ++ D+ +G+ DG+T++ LT CS++G
Sbjct: 389 RVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTG 448
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
V EIFNSM + ++P C+ MP + D V+WG L
Sbjct: 449 KVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGAL 508
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N +A+ AA
Sbjct: 509 MGACRMHRNAEIAEFAA 525
Score = 42.0 bits (97), Expect = 0.093, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 32/45 (71%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
TW+ MI Y +NE++ +A+S +++++ GV+ + + ++ILT C+
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCA 344
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + T+L +CA L ++ LG+QI +I+K +D ++ S +++Y CG
Sbjct: 511 VDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQ 570
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN M+ GYA++ E+A+ +++ + VK + TF+A+L C H G
Sbjct: 571 LIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMG 630
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F+SM ++ + P+ C+ MP++ D V+W L
Sbjct: 631 LVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTL 690
Query: 140 VSSCQVHSNVRLAKKAA 156
+S C++H NV +A+KAA
Sbjct: 691 LSXCKIHGNVEVAEKAA 707
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F + +VL +CA +L G +I RI+K G D FVG A I++Y CG
Sbjct: 412 PDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKL 471
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I G++ + E+A + ++ GV D T+ IL C++
Sbjct: 472 HDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCAN 527
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 14 SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VT 56
+CA + G Q+ +K ++I V +A +++Y CG V+
Sbjct: 322 ACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVS 381
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
WN +I + +N E+ +SL+ ++ SG++ D T+ ++L C+ + +EI N +
Sbjct: 382 WNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRI 440
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAEN 67
F VL SC+ L G QI VK G+ D+ GSA +++Y C V +N
Sbjct: 161 FAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCV----------QN 210
Query: 68 EYVEQAISLYKDIIASGV 85
+ + + L+K++ +GV
Sbjct: 211 DDLRGGLELFKEMQKAGV 228
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V +VLS CA+L++L LGR+I +V+ +I VG+ IN+Y G
Sbjct: 1245 VKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGN 1304
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN M+ GY + E AI + +I G + DGVTFVA+L+ CSH+G
Sbjct: 1305 LVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAG 1364
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV E+F+ M + V+P+ C+ MP + + VWG L
Sbjct: 1365 LVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGAL 1424
Query: 140 VSSCQVHSNVRLAKKAA 156
++SC++H N +A++ A
Sbjct: 1425 LNSCRMHKNTEVAEETA 1441
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 17/128 (13%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F V+ +CA + S L R + +V+ G+ ++ VG+ + +Y G
Sbjct: 974 FTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFER 1033
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN M+ GYA N A +++ + ++G++ + VT+ ++L+ + G
Sbjct: 1034 MAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVET 1093
Query: 109 VEIFNSME 116
+E+F M
Sbjct: 1094 MELFGRMR 1101
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 23/116 (19%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT----------- 56
F +L C+K L +QI ++I+ G F+ + +++Y G+
Sbjct: 875 FNDLLQQCSKS---HLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSP 931
Query: 57 ---------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN ++ + Y E+A+ +Y + GV DG TF ++ C+ G
Sbjct: 932 IECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMG 987
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+W+ +I G+A E+A+ L++ + + VK + VT ++L+ C+ ++ EI
Sbjct: 1215 VSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREI--- 1271
Query: 115 MEHDHEVK 122
H H V+
Sbjct: 1272 --HGHVVR 1277
>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570 [Vitis vinifera]
Length = 607
Score = 105 bits (263), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F FT+++++CA L+ L G+QI RI++ G ++ + +A I++Y CG
Sbjct: 309 PNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGLDGNLALSNALIDMYSKCGNIADSHQV 368
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W M+ GY + Y E+A+ L+ ++ SG++ D V F+AIL+ CSH+GLV
Sbjct: 369 FGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLV 428
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F M D+ + P C+ MP+K D VWG +
Sbjct: 429 DEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMPFKPDECVWGPFLG 488
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H+ L K AA
Sbjct: 489 ACKAHTFPNLGKLAA 503
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 52/112 (46%), Gaps = 18/112 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F+ + +C + S G Q+ + K G+ +++ V ++ +++YC C
Sbjct: 212 FSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYE 271
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+TWN +I GY + E ++ ++ + + G + TF +I+ C+
Sbjct: 272 MNQRDLITWNTLIAGYERSNPTE-SLYVFSMMESEGFSPNCFTFTSIMAACA 322
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 18/119 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P F ++VL +C + L GR + +K G I+V +A +++Y C
Sbjct: 107 PNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACM 166
Query: 54 ---------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I GY + + +++ ++ V+ + +F + C+ G
Sbjct: 167 VFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTSIG 225
>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
gi|223942207|gb|ACN25187.1| unknown [Zea mays]
gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 885
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + T+ CA L + LG QI+ R VK G D V +A I +Y CG
Sbjct: 520 VRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEAR 579
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY+++ +QAI ++ DI+ G K D +++VA+L+ CSHSG
Sbjct: 580 KVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSG 639
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F+ M+ H + P C+ MP K VWG L
Sbjct: 640 LVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGAL 699
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N LA+ AA
Sbjct: 700 LSACKIHGNNELAELAA 716
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+T+ L++CA+LSSL G+Q+ +++++ D +V SA + +Y G
Sbjct: 293 YTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLH 352
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V W +I G+ + +++ L+ + A + D +++ C
Sbjct: 353 DRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGC 401
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 21/136 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QF T++S C L LGRQ+ + +K G + V ++ I++Y C
Sbjct: 391 QFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFR 450
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+W MI Y++ V +A + + V +T+ A+L G
Sbjct: 451 FMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEED 506
Query: 108 EVEIFNSMEHDHEVKP 123
+ ++ M + V+P
Sbjct: 507 GLRMYKVMLSEEYVRP 522
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 48/148 (32%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P F + SC L L Q+L + K +D V +A ++++ CG
Sbjct: 155 WPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASR 214
Query: 55 -----------------------------------------VTWNEMIHGYAENEYVEQA 73
V+WN M+ +++ V +A
Sbjct: 215 LFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREA 274
Query: 74 ISLYKDIIASGVKHDGVTFVAILTPCSH 101
+ + D+ + GV+ D T+ + LT C+
Sbjct: 275 LDMVVDMQSKGVRLDSTTYTSSLTACAR 302
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 99/193 (51%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F +VLS+CA L++L LGRQ +V+ G+ DI VGSA +++Y G
Sbjct: 142 RFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFD 201
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+WN +I G A++ A+ L++ ++ +G+K + ++FV +L+ CSH+GLV
Sbjct: 202 KMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNE 261
Query: 108 EVEIFNSMEHDHEVKPK---------------CL---------MPYKDDLVVWGDLVSSC 143
FN M ++ + P CL MP + D+ VWG L+ +C
Sbjct: 262 GRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGAC 321
Query: 144 QVHSNVRLAKKAA 156
++H N LAK+ A
Sbjct: 322 RIHGNTELAKRIA 334
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 30/171 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P QF +TV+ +CA ++SL G+Q I+K G+ +D+ V +A +++Y CG
Sbjct: 6 VKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAG 65
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN MI G+A+N +++A+ L+ ++ + D V++ A++ + +G
Sbjct: 66 HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEM----SERDVVSWTAVIAGYAQNG 121
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
+ +FN M K D + G ++S+C + + L ++
Sbjct: 122 YGDESLNVFNQMRK---------TGMKSDRFIMGSVLSACADLAALELGRQ 163
>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
Length = 865
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + T+ CA L + LG QI+ R VK G D V +A I +Y CG
Sbjct: 500 VRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEAR 559
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY+++ +QAI ++ DI+ G K D +++VA+L+ CSHSG
Sbjct: 560 KVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSG 619
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F+ M+ H + P C+ MP K VWG L
Sbjct: 620 LVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGAL 679
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N LA+ AA
Sbjct: 680 LSACKIHGNNELAELAA 696
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+T+ L++CA+LSSL G+Q+ +++++ D +V SA + +Y G
Sbjct: 273 YTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLH 332
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V W +I G+ + +++ L+ + A + D +++ C
Sbjct: 333 DRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGC 381
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 55/136 (40%), Gaps = 21/136 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QF T++S C L LGRQ+ + +K G + V ++ I++Y C
Sbjct: 371 QFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFR 430
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+W MI Y++ V +A + + V +T+ A+L G
Sbjct: 431 FMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNV----ITWNAMLGAYIQHGAEED 486
Query: 108 EVEIFNSMEHDHEVKP 123
+ ++ M + V+P
Sbjct: 487 GLRMYKVMLSEEYVRP 502
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 48/148 (32%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P F + SC L L Q+L + K +D V +A ++++ CG
Sbjct: 135 WPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASR 194
Query: 55 -----------------------------------------VTWNEMIHGYAENEYVEQA 73
V+WN M+ +++ V +A
Sbjct: 195 LFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREA 254
Query: 74 ISLYKDIIASGVKHDGVTFVAILTPCSH 101
+ + D+ + GV+ D T+ + LT C+
Sbjct: 255 LDMVVDMQSKGVRLDSTTYTSSLTACAR 282
>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
Length = 688
Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 47/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY------GNDIFVGSAPINIYCNCG 54
++PT + + VL++C ++ L LG+Q ++K+G+ +D+FVG++ +++Y G
Sbjct: 381 IWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTG 440
Query: 55 -----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI GYA+N + A+ L++ ++ S D VT + +L+
Sbjct: 441 SIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLS 500
Query: 98 PCSHSGLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDL 133
C HSGLV F+SM DH + P C+ MP + D
Sbjct: 501 ACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDS 560
Query: 134 VVWGDLVSSCQVHSNVRLAKKAA 156
V+W L+ +C++H NV L + A
Sbjct: 561 VLWASLLGACRLHKNVELGEWTA 583
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 25/152 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F + LS+CA G Q+ + + + +D+ + SA +++Y C
Sbjct: 152 YSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDA 211
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN +I Y +N V +A+ L+ +++A+G D VT ++++ C +GL A+
Sbjct: 212 MPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSAC--AGLA-AD 268
Query: 109 VEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140
E H H VK L +DD+V+ LV
Sbjct: 269 RE--GRQVHAHMVKCDRL---RDDMVLNNALV 295
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 34/171 (19%), Positives = 81/171 (47%), Gaps = 31/171 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCGVTW---- 57
P + ++V+S+CA L++ GRQ+ +VK D +D+ + +A +++Y CG TW
Sbjct: 250 PDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARC 309
Query: 58 -------------NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
++ GYA++ VE A ++ ++ V + + ++ + +G
Sbjct: 310 IFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNV----IAWNVLIAAYAQNGE 365
Query: 105 VYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155
+ +F ++ D + P +G+++++C ++++L ++A
Sbjct: 366 EEEAIRLFVQLKRD------SIWPTH---YTYGNVLNACGNIADLQLGQQA 407
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F +VLSSCA L + +G+++ + +G+ ++F+ +A I++Y CG
Sbjct: 250 VCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKAR 309
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI Y + E ++L+ D+I G++ DG FV +L+ CSHSG
Sbjct: 310 AVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSG 369
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L +E+F +M+ +++++P CL MP + D VWG L
Sbjct: 370 LTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGAL 429
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C++H NV +A+ A
Sbjct: 430 LGACKIHKNVDMAELA 445
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 34/146 (23%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P F F +L SCA LS G+Q+ +++ G + FV +A I++YC C
Sbjct: 48 PDAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKV 107
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS--- 100
GV +N +I GY N V A +++ + +GV D VT + ++ C+
Sbjct: 108 FEENPHSSQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPE 167
Query: 101 --------HS----GLVYAEVEIFNS 114
H G Y+EV + NS
Sbjct: 168 YLWLGRSLHGECVKGGTYSEVAVLNS 193
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 17/100 (17%)
Query: 21 LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHG 63
L+LGR + VK G +++ V ++ I +Y CG +TWN +I G
Sbjct: 169 LWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISG 228
Query: 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
Y++N + L++ + +SGV D T V++L+ C+H G
Sbjct: 229 YSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLG 268
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V +VLS CA+L++L LGR+I +V+ +I VG+ IN+Y G
Sbjct: 407 VKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGN 466
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN M+ GY + E AI + +I G + DGVTFVA+L+ CSH+G
Sbjct: 467 LVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAG 526
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV E+F+ M + V+P+ C+ MP + + VWG L
Sbjct: 527 LVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGAL 586
Query: 140 VSSCQVHSNVRLAKKAA 156
++SC++H N +A++ A
Sbjct: 587 LNSCRMHKNTEVAEETA 603
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 17/128 (13%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F V+ +CA + S L R + +V+ G+ ++ VG+ + +Y G
Sbjct: 136 FTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFER 195
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN M+ GYA N A +++ + ++G++ + VT+ ++L+ + G
Sbjct: 196 MAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVET 255
Query: 109 VEIFNSME 116
+E+F M
Sbjct: 256 MELFGRMR 263
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 23/116 (19%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT----------- 56
F +L C+K L +QI ++I+ G F+ + +++Y G+
Sbjct: 37 FNDLLQQCSKSH---LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSP 93
Query: 57 ---------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN ++ + Y E+A+ +Y + GV DG TF ++ C+ G
Sbjct: 94 IECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMG 149
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+W+ +I G+A E+A+ L++ + + VK + VT ++L+ C+ ++ EI
Sbjct: 377 VSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREI--- 433
Query: 115 MEHDHEVK 122
H H V+
Sbjct: 434 --HGHVVR 439
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F++++ +CA L++L LG+Q+ I ++G+ +IF+ S+ +++Y CG
Sbjct: 397 IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAR 456
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI G A + + AI L++ + G++ + V F+A+LT CSH+G
Sbjct: 457 QIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAG 516
Query: 104 LVYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDL 139
LV + FNSM D + P C MP VW L
Sbjct: 517 LVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATL 576
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+VH NV +A+K A
Sbjct: 577 LSACRVHKNVDMAEKVA 593
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY 50
+YP F +VL +CA L L LG + I++ G D++ G+A +N+Y
Sbjct: 104 LYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMY 153
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 105 bits (262), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V +VLS CA+L++L LGR+I +V+ +I VG+ IN+Y G
Sbjct: 407 VKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGN 466
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN M+ GY + E AI + +I G + DGVTFVA+L+ CSH+G
Sbjct: 467 LVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSHAG 526
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV E+F+ M + V+P+ C+ MP + + VWG L
Sbjct: 527 LVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGAL 586
Query: 140 VSSCQVHSNVRLAKKAA 156
++SC++H N +A++ A
Sbjct: 587 LNSCRMHKNTEVAEETA 603
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 17/128 (13%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F V+ +CA + S L R + +V+ G+ ++ VG+ + +Y G
Sbjct: 136 FTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFER 195
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN M+ GYA N A +++ + ++G++ + VT+ ++L+ + G
Sbjct: 196 MAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVET 255
Query: 109 VEIFNSME 116
+E+F M
Sbjct: 256 MELFGRMR 263
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 23/116 (19%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT----------- 56
F +L C+K L +QI ++I+ G F+ + +++Y G+
Sbjct: 37 FNDLLQQCSKSH---LSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSP 93
Query: 57 ---------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN ++ + Y E+A+ +Y + GV DG TF ++ C+ G
Sbjct: 94 IECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMG 149
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+W+ +I G+A E+A+ L++ + + VK + VT ++L+ C+ ++ EI
Sbjct: 377 VSWSAVIGGFASKGQGEEALELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREI--- 433
Query: 115 MEHDHEVK 122
H H V+
Sbjct: 434 --HGHVVR 439
>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
Length = 861
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F + TVL +CA L+S LG+QI +++K +D+++ S +++Y CG
Sbjct: 557 ITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSR 616
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI GYA + E+AI L++ +I +K + VTF++IL C+H G
Sbjct: 617 LMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMG 676
Query: 104 LVYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDL 139
L+ +E F M+ D+ + P+ MP++ D V+W L
Sbjct: 677 LIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTL 736
Query: 140 VSSCQVH-SNVRLAKKA 155
+ C +H +NV +A++A
Sbjct: 737 LGVCTIHRNNVEVAEEA 753
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+Q + +VL SCA LS L LG Q+ +K + D V +A +++Y C
Sbjct: 238 SQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILF 297
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++N MI GY++ E+ +A+ L+ +++SG+ D ++ + C+
Sbjct: 298 DNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 351
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 38/138 (27%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F F ++L +C SL G +I + IVK G ++ VG + I++Y CG
Sbjct: 437 IEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAE 495
Query: 55 -------------------------------VTWNEMIHGYAENEYVEQAISLYKDIIAS 83
V+WN +I GY E E A L+ ++
Sbjct: 496 KIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEM 555
Query: 84 GVKHDGVTFVAILTPCSH 101
G+ D T+ +L C++
Sbjct: 556 GITPDKFTYATVLDTCAN 573
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 34 DGYG--NDIFVGSAPINIY-CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV 90
+GY ND+F ++ N+ V+WN M+ GY +N ++I ++ D+ G++ DG
Sbjct: 80 NGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGR 139
Query: 91 TFVAILTPCS 100
TF IL CS
Sbjct: 140 TFAIILKVCS 149
>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 599
Score = 105 bits (262), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 100/195 (51%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++VL C+ LS+L LG+Q+ I K +I G++ +++YC CG
Sbjct: 225 PNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKL 284
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN MI GYA++ E+A+ L+ + G+K D +TFVA+L+ C+H+G V
Sbjct: 285 FLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFV 344
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+E FNSM D+ V+ K C+ MP+K ++G L+
Sbjct: 345 DLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLG 404
Query: 142 SCQVHSNVRLAKKAA 156
+C++H N+ LA+ AA
Sbjct: 405 ACRIHKNLELAEFAA 419
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTWN MI GY EN E + L+K ++ SG + + + ++L CS+
Sbjct: 193 VTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSN 239
>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
Length = 843
Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + T+L +CA L ++ LG+QI +I+K +D ++ S +++Y CG
Sbjct: 527 VDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQ 586
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN M+ GYA++ E+A+ +++ + VK + TF+A+L C H G
Sbjct: 587 LIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMG 646
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F+SM ++ + P+ C+ MP++ D V+W L
Sbjct: 647 LVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTL 706
Query: 140 VSSCQVHSNVRLAKKAA 156
+S C++H NV +A+KAA
Sbjct: 707 LSICKIHGNVEVAEKAA 723
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 21/102 (20%)
Query: 17 KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNE 59
K SLF I RI+K G D FVG A I++Y CG V+WN
Sbjct: 446 KTLSLF----IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNA 501
Query: 60 MIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+I G++ + E+A + ++ GV D T+ IL C++
Sbjct: 502 IISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCAN 543
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F VL SC+ L G QI VK G+ D+ GSA +++Y C
Sbjct: 177 FAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMP 236
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W+ +I G +N+ + + L+K++ +GV TF ++ C+
Sbjct: 237 EKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCA 286
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC 53
+Q F +V SCA LS+L LG Q+ +K +G D+ +G+A +++Y C
Sbjct: 274 SQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKC 323
>gi|115484703|ref|NP_001067495.1| Os11g0213500 [Oryza sativa Japonica Group]
gi|77549336|gb|ABA92133.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113644717|dbj|BAF27858.1| Os11g0213500 [Oryza sativa Japonica Group]
gi|125576589|gb|EAZ17811.1| hypothetical protein OsJ_33354 [Oryza sativa Japonica Group]
Length = 470
Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats.
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 42/189 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKD-GYGNDIFVGSAPINIYCNCG-------------- 54
+VL+ CAK L GR+I R+V+ + +DI VG+A IN+Y CG
Sbjct: 211 SVLNICAKEGELMKGREIHGRMVRCLAFDSDIAVGNALINMYAKCGRVNVSQAVFSGMQQ 270
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+W+ MIH Y+ + EQA+ +Y ++++ GVK + +TF ++L+ CSHSGLV +I
Sbjct: 271 RDVVSWSTMIHSYSIHGKGEQALKVYMEMLSEGVKPNWITFTSVLSSCSHSGLVTEGRKI 330
Query: 112 FNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F SM H V P C+ MP + VWG L+S+C +H+
Sbjct: 331 FESMTKVHGVHPAAEHYACMVDLLGRAGAIEEAVGLIRKMPMEPCASVWGALLSACAMHN 390
Query: 148 NVRLAKKAA 156
NV + + AA
Sbjct: 391 NVDVGEIAA 399
>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 903
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F + TVL +CA L+S LG+QI +++K +D+++ S +++Y CG
Sbjct: 599 ITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSR 658
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI GYA + E+AI L++ +I +K + VTF++IL C+H G
Sbjct: 659 LMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMG 718
Query: 104 LVYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDL 139
L+ +E F M+ D+ + P+ MP++ D V+W L
Sbjct: 719 LIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTL 778
Query: 140 VSSCQVH-SNVRLAKKA 155
+ C +H +NV +A++A
Sbjct: 779 LGVCTIHRNNVEVAEEA 795
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+Q + +VL SCA LS L LG Q+ +K + D V +A +++Y C
Sbjct: 280 SQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILF 339
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++N MI GY++ E+ +A+ L+ +++SG+ D ++ + C+
Sbjct: 340 DNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 393
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 38/138 (27%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F F ++L +C SL G +I + IVK G ++ VG + I++Y CG
Sbjct: 479 IEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAE 537
Query: 55 -------------------------------VTWNEMIHGYAENEYVEQAISLYKDIIAS 83
V+WN +I GY E E A L+ ++
Sbjct: 538 KIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEM 597
Query: 84 GVKHDGVTFVAILTPCSH 101
G+ D T+ +L C++
Sbjct: 598 GITPDKFTYATVLDTCAN 615
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 34 DGYG--NDIFVGSAPINIY-CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV 90
+GY ND+F ++ N+ V+WN M+ GY +N ++I ++ D+ G++ DG
Sbjct: 122 NGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGR 181
Query: 91 TFVAILTPCS 100
TF IL CS
Sbjct: 182 TFAIILKVCS 191
>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
Length = 608
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + VLS+CA+L S LG QI + + ++GSA I++Y CG
Sbjct: 315 PNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSV 374
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TWN M+ G A N + + AI+LYK++ V+ + +TFVA+LT C+H+GLV
Sbjct: 375 FNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLV 434
Query: 106 YAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVS 141
+ F M+ H V P+ C M + + V+W L+S
Sbjct: 435 DQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLS 494
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H++V LAK AA
Sbjct: 495 ACRAHADVELAKLAA 509
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T+ S CAK L G+ + I + N + V +A + +Y C
Sbjct: 215 PNAITIATMFSICAKTGDLETGKWARSLIAEQDLQN-MIVHTALMEMYVKCQAIDEARRE 273
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ MI GYA+N +++ L++ + A+ K + VT V +L+ C+ G
Sbjct: 274 FDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLG 331
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 102/197 (51%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + VLSSC ++ +L G+ + + + +G ++ VG+A +++YC CG
Sbjct: 252 VRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDAR 311
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GY + + ++A+ L+ ++ GVK +TFVA+LT C+H+G
Sbjct: 312 KVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAG 371
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV E+F+SM+ + ++PK C+ M + D V+WG L
Sbjct: 372 LVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTL 431
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++HSNV L ++ A
Sbjct: 432 LWACRIHSNVSLGEEIA 448
>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
Length = 608
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + VLS+CA+L S LG QI + + ++GSA I++Y CG
Sbjct: 315 PNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSV 374
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TWN M+ G A N + + AI+LYK++ V+ + +TFVA+LT C+H+GLV
Sbjct: 375 FNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLV 434
Query: 106 YAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVS 141
+ F M+ H V P+ C M + + V+W L+S
Sbjct: 435 DQGMSFFKEMKTIHHVSPQVEHCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLS 494
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H++V LAK AA
Sbjct: 495 ACRAHADVELAKLAA 509
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T+ S CAK L G+ + I + N + V +A + +Y C
Sbjct: 215 PNAITIATMFSICAKTGDLETGKWARSLIAEQDLQN-MIVHTALMEMYVKCRAIDEARRE 273
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ MI GYA+N +++ L++ + A+ K + VT V +L+ C+ G
Sbjct: 274 FDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLG 331
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 105 bits (261), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + T+L +CA L ++ LG+QI +I+K +D ++ S +++Y CG
Sbjct: 574 VDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQ 633
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN M+ GYA++ E+A+ +++ + VK + TF+A+L C H G
Sbjct: 634 LIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMG 693
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F+SM ++ + P+ C+ MP++ D V+W L
Sbjct: 694 LVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTL 753
Query: 140 VSSCQVHSNVRLAKKAA 156
+S C++H NV +A+KAA
Sbjct: 754 LSICKIHGNVEVAEKAA 770
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F + +VL +CA +L G +I RI+K G D FVG A I++Y CG
Sbjct: 475 PDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKL 534
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I G++ + E+A + ++ GV D T+ IL C++
Sbjct: 535 HDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCAN 590
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+Q F +V SCA LS+L LG Q+ +K +G D+ +G+A +++Y C
Sbjct: 274 SQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLF 333
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++N +I GYA ++ +A+ +++ + SG+ D V+ C+
Sbjct: 334 NSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACA 387
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F VL SC+ L G QI VK G+ D+ GSA +++Y C
Sbjct: 177 FAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMP 236
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W+ +I G +N+ + + L+K++ +GV TF ++ C+
Sbjct: 237 EKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCA 286
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+ + +CA + G Q+ +K ++I V +A +++Y CG
Sbjct: 376 EVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFE 435
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+WN +I + +N E+ +SL+ ++ SG++ D T+ ++L C+ +
Sbjct: 436 EMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNC 495
Query: 108 EVEIFNSM 115
+EI N +
Sbjct: 496 GMEIHNRI 503
>gi|125533803|gb|EAY80351.1| hypothetical protein OsI_35522 [Oryza sativa Indica Group]
Length = 470
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 42/189 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKD-GYGNDIFVGSAPINIYCNCG-------------- 54
+VL+ CAK L GR+I R+V+ + +DI VG+A IN+Y CG
Sbjct: 211 SVLNICAKEGELMKGREIHGRMVRCLAFDSDIAVGNALINMYAKCGRVNVSQAVFSGMQQ 270
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+W+ MIH Y+ + EQA+ +Y ++++ GVK + +TF ++L+ CSHSGLV +I
Sbjct: 271 RDVVSWSTMIHSYSIHGKGEQALKVYMEMLSEGVKPNWITFTSVLSSCSHSGLVTEGRKI 330
Query: 112 FNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F SM H V P C+ MP + VWG L+S+C +H+
Sbjct: 331 FESMTKVHGVHPAAEHYACMVDLLGRAGAIEEAVGLIRKMPMEPCASVWGALLSACAMHN 390
Query: 148 NVRLAKKAA 156
NV + + AA
Sbjct: 391 NVDVGEIAA 399
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 101/198 (51%), Gaps = 43/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F++++ +CA L++L LG+Q+ I++ + ++F+ SA +++Y CG
Sbjct: 333 IKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTAR 392
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GYA + + AISL+K + GVK + V F+A+LT CSH+G
Sbjct: 393 WIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAG 452
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYK--DDLV-----------------------VWGD 138
LV + FNSM D+ + P L Y DL+ VW
Sbjct: 453 LVDEAWKYFNSMTQDYRIIPG-LEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWST 511
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+++C+VH N+ LA+K +
Sbjct: 512 LLAACRVHKNIELAEKVS 529
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P F ++VL A+ +L G++I +++GY D+F+GS+ I++Y C
Sbjct: 234 PDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRV 293
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
G++WN +I G +N ++ + ++ ++ + +K + V+F +I+ C+H
Sbjct: 294 FYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAH 349
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P VL +CA L++L GR+I I++ GY +D+ V A +++Y CG
Sbjct: 495 PDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLL 554
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI GY + + +AIS + ++ +G++ D +F AIL CSHSGL+
Sbjct: 555 FDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLL 614
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ FNSM ++ V+PK C+ MP K D +WG L+S
Sbjct: 615 NEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLS 674
Query: 142 SCQVHSNVRLAKKAA 156
C++H +V+LA+K A
Sbjct: 675 GCRIHHDVKLAEKVA 689
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + T+++ +CA SSL GR + + ++K+G G+++ V +A IN+Y CG
Sbjct: 393 VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEAR 452
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN MI GY++N +A+ L+ D + K D +T +L C+
Sbjct: 453 LVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLD-MQKQFKPDDITMACVLPACA 508
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+VL +CA + +L LGR + VK + ++ + +++Y CG
Sbjct: 299 LVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG 358
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+W +I Y AI L+ ++ + GV+ D T +I+ C+ S
Sbjct: 359 DTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACS 410
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +VL CA+ SL G+++ + I+ +G D +G+ + +Y NCG
Sbjct: 97 YCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIM 156
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
WN ++ YA+ +++SL+K + GV + TF +L
Sbjct: 157 NDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVL 202
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ FT VL A L + +++ ++K G+G++ V ++ I Y G
Sbjct: 196 YTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDE 255
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI+G N + + ++ ++ GV+ D T V++L C++ G
Sbjct: 256 LSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIG 310
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + VL +CA L+++ LG+QI +I+K +D+++ S +++Y CG
Sbjct: 581 VNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQ 640
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN M+ GYA + E+A+ L++ + VK + TFV++L C+H G
Sbjct: 641 LMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMG 700
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F+ M ++ + P+ C+ MP++ D V+W +L
Sbjct: 701 LVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNL 760
Query: 140 VSSCQVHSNVRLAKKA 155
+S C++H NV +A+KA
Sbjct: 761 LSVCKIHGNVEVAEKA 776
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 17/120 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F + +VL +CA +L G +I TRI+K G G D FVG+A +++YC CG
Sbjct: 482 PDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKI 541
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I G++ + E A + ++ GV D T+ A+L C++ V
Sbjct: 542 HDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATV 601
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 39/184 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV-------- 55
+Q + ++ SCA LS+L LG+++ + +K +G+DI VG+A +++Y CG
Sbjct: 281 SQSIYASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVL 340
Query: 56 ---------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH----- 101
++N +I GYA ++ QA+ ++ ++ +G+ D +T L C+
Sbjct: 341 SSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDL 400
Query: 102 -----SGLVYAEVEIFN----SMEHDHEVKPKCL--------MPYKDDLVVWGDLVSSCQ 144
GL + + N + D K K L M + D V W ++++C+
Sbjct: 401 EGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACE 460
Query: 145 VHSN 148
+ N
Sbjct: 461 QNGN 464
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
VL +C L +G Q+ +VK G+ D+ GSA + +Y C
Sbjct: 184 LAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELP 243
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W+ MI G +N+ + + L+K++ GV + ++ C+
Sbjct: 244 EKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCA 293
>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
Length = 504
Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
TT+L CA++++L G++I +IVK D+ V ++ +++Y CGV
Sbjct: 134 LTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMR 193
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+WN M+ GYA N Y+ A+ L+ ++ + G++ D VTF+A+L+ CSH+GL +
Sbjct: 194 SKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQK 253
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
+F+ ME D V P CL MP K +WG L++SC++H
Sbjct: 254 LFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLNSCRLH 313
Query: 147 SNVRLAKKAA 156
+ V LA+ A
Sbjct: 314 NEVPLAEAIA 323
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F+T L +CA L L++GR + ++VK G D V + + +Y C
Sbjct: 28 PGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGPDQVVNNGLLRLYTQCECFNEVLKV 87
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN +I G+ + + + +A+ +++ + G+ VT IL C+ +
Sbjct: 88 FDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTILPICARVTAL 147
Query: 106 YAEVEI 111
+ EI
Sbjct: 148 LSGKEI 153
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F LS C+ L+SL G+Q+ + + K G+ +D+FVGSA +++Y CG
Sbjct: 613 VKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAE 672
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN +I GYA+N +A++ ++ ++ G+ DGVTF IL+ CSH G
Sbjct: 673 ALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQG 732
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV E FNSM D + P C+ M + ++W +
Sbjct: 733 LVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETV 792
Query: 140 VSSCQVHSNVRLAKKAA 156
+ + ++H+N+ L +KAA
Sbjct: 793 LGASKMHNNLVLGEKAA 809
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 17/119 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F T L +C+ +L LG+Q+ + K G D+FVGSA +++Y CG
Sbjct: 209 IMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELAS 268
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
VTWN +++GYA+ V + L+ ++ VK + T +L C++S
Sbjct: 269 KMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANS 327
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F ++L SC+ L + GRQ+ I+K+ ++ FV +A I++Y C
Sbjct: 514 PNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVA 573
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
TW +I YA+ E+A++ ++ + GVK + T L+ CS
Sbjct: 574 FNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCS 628
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHG 63
+F TTVL CA +L G+ I + I+K GY + F+G +++Y CG+ +
Sbjct: 313 NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID----- 367
Query: 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116
AI ++K I K D V + A++T G +++F+ M
Sbjct: 368 ---------AIGVFKTI----KKPDIVVWSALITCLDQQGQSEESIKLFHLMR 407
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q+ ++LS+ +L G+ I + K G+ D+ V +A + +Y G
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKL 472
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN + G + ++ ++++ ++ G + TF++IL CS
Sbjct: 473 YESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
++++L CA SL + + I IVKD D + + +N+Y C
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W +I G + +I L++++ G+ + T L CS
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACS 224
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F LS C+ L+SL G+Q+ + + K G+ +D+FVGSA +++Y CG
Sbjct: 613 VKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAE 672
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN +I GYA+N +A++ ++ ++ G+ DGVTF IL+ CSH G
Sbjct: 673 ALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQG 732
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV E FNSM D + P C+ M + ++W +
Sbjct: 733 LVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETV 792
Query: 140 VSSCQVHSNVRLAKKAA 156
+ + ++H+N+ L +KAA
Sbjct: 793 LGASKMHNNLVLGEKAA 809
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 17/119 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F T L +C+ +L LG+Q+ + K G D+FVGSA +++Y CG
Sbjct: 209 IMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELAS 268
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
VTWN +++GYA+ V + L+ ++ VK + T +L C++S
Sbjct: 269 KMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANS 327
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F ++L SC+ L + GRQ+ I+K+ ++ FV +A I++Y C
Sbjct: 514 PNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVA 573
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
TW +I YA+ E+A++ ++ + GVK + T L+ CS
Sbjct: 574 FNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCS 628
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHG 63
+F TTVL CA +L G+ I + I+K GY + F+G +++Y CG+ +
Sbjct: 313 NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID----- 367
Query: 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116
AI ++K I K D V + A++T G +++F+ M
Sbjct: 368 ---------AIGVFKTI----KKPDIVVWSALITCLDQQGQSEESIKLFHLMR 407
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q+ ++LS+ +L G+ I + K G+ D+ V +A + +Y G
Sbjct: 413 PNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKL 472
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN + G + ++ ++++ ++ G + TF++IL CS
Sbjct: 473 YESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
++++L CA SL + + I IVKD D + + +N+Y C
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W +I G + +I L++++ G+ + T L CS
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACS 224
>gi|6041788|gb|AAF02108.1|AC009755_1 hypothetical protein [Arabidopsis thaliana]
Length = 332
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 101/198 (51%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F + TVL +CA L+S LG+QI +++K +D+++ S +++Y CG
Sbjct: 28 ITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSR 87
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI GYA + E+AI L++ +I +K + VTF++IL C+H G
Sbjct: 88 LMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMG 147
Query: 104 LVYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDL 139
L+ +E F M+ D+ + P+ MP++ D V+W L
Sbjct: 148 LIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTL 207
Query: 140 VSSCQVH-SNVRLAKKAA 156
+ C +H +NV +A++A
Sbjct: 208 LGVCTIHRNNVEVAEEAT 225
>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
Length = 1113
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 98/194 (50%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F F ++LS A + S+ G QI +++VK G + V +A I++Y CG
Sbjct: 473 SAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVF 532
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++W MI G+A++ + + + + +I GVK + VT+VAIL+ CSH GLV
Sbjct: 533 NFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVS 592
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
FNSM DH++KPK C+ MP++ D++VW + +
Sbjct: 593 EGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGA 652
Query: 143 CQVHSNVRLAKKAA 156
C+VHSN L K AA
Sbjct: 653 CRVHSNTELGKLAA 666
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 24/119 (20%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F ++V S+CA+L +L LG+Q+ + ++ G +D V + +++Y C
Sbjct: 269 KFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRK 326
Query: 55 ----------VTWNEMIHGYAEN-EYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSH 101
++W +I GY +N +AI+L+ ++I G V+ + TF + C +
Sbjct: 327 VFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F++ +C LS +G+Q+L + K G ++ V ++ I+++
Sbjct: 369 VEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQ 428
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N + G N EQA L +I + TF ++L+ ++ G
Sbjct: 429 RAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVG 488
Query: 104 LVYAEVEI 111
+ +I
Sbjct: 489 SIRKGEQI 496
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG------- 54
P + +T V+ +C+ + +GR L ++K G + +D+ VG + I+++
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTW MI + + +AI + D++ SG + D T ++ + C+
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAE 281
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 20/118 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F+++L SC + LG+ + R+++ D + ++ I++Y G
Sbjct: 65 FSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMR 124
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ M+ Y N AI ++ + + G+ + + A++ CS+S V
Sbjct: 125 RFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFV 182
>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
[Vitis vinifera]
Length = 788
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q F LSSCA L++L +G+Q+ ++K GY D+FV +A I +Y CG
Sbjct: 452 PDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELL 511
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I YA N +A+ L+ + GV D VTFV IL+ CSH GL+
Sbjct: 512 FKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLI 571
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+++F M + ++P C+ M + +WG L+
Sbjct: 572 DQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLG 631
Query: 142 SCQVHSNVRLAKKAA 156
+C++H N+ LAK AA
Sbjct: 632 ACRIHGNLELAKFAA 646
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 30/147 (20%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRI----------VKDGYGNDIFVGSAPI---NIYCNCG 54
+TTV++ ++ L RQ+L ++ + GY + + A I
Sbjct: 298 WTTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDV 357
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V WN MI GY++ +++A+ L+K + VK D V++ ++ + G + A ++IF
Sbjct: 358 VCWNTMIAGYSQCGRMDEALHLFKQM----VKKDIVSWNTMVASYAQVGQMDAAIKIFEE 413
Query: 115 MEHDHEVKPKCLMPYKDDLVVWGDLVS 141
M+ + ++V W L+S
Sbjct: 414 MK-------------EKNIVSWNSLIS 427
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 99/196 (50%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F +VL++CA+L +L LG I T I K+ ND FVG+A I++Y CG
Sbjct: 259 IKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMAL 318
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW M+ G A N E+A++++ ++ + V D VT+V +L+ C+H+G
Sbjct: 319 SIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTG 378
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V + F SM H ++P C+ MP K + +VWG L
Sbjct: 379 MVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGAL 438
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C++H + +A++A
Sbjct: 439 LGACRIHKDAEMAERA 454
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 36/137 (26%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + + + + +L LGR++ +VK G +++F +A IN+Y CG
Sbjct: 110 VKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMAR 169
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI GY + +K D +++ AI+T ++G
Sbjct: 170 GIFDMSCKSDVVTWNAMISGY------------------NRIKKDVISWTAIVTGFVNTG 211
Query: 104 LVYAEVEIFNSM-EHDH 119
V A + F+ M E DH
Sbjct: 212 QVDAARKYFHKMPERDH 228
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY ++A+ L++++ S +K D T V++LT C+ G
Sbjct: 229 VSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLG 277
>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
Length = 679
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 101/198 (51%), Gaps = 43/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F++++ +CA L++L LG+Q+ I++ + ++F+ SA +++Y CG
Sbjct: 293 IKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTAR 352
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GYA + + AISL+K + GVK + V F+A+LT CSH+G
Sbjct: 353 WIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAG 412
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYK--DDLV-----------------------VWGD 138
LV + FNSM D+ + P L Y DL+ VW
Sbjct: 413 LVDEAWKYFNSMTQDYRIIPG-LEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWST 471
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+++C+VH N+ LA+K +
Sbjct: 472 LLAACRVHKNIELAEKVS 489
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 61/116 (52%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P F ++VL A+ +L G++I +++GY D+F+GS+ I++Y C
Sbjct: 194 PDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRV 253
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
G++WN +I G +N ++ + ++ ++ + +K + V+F +I+ C+H
Sbjct: 254 FYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAH 309
>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2261; Flags: Precursor
gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 98/194 (50%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F F ++LS A + S+ G QI +++VK G + V +A I++Y CG
Sbjct: 473 SAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVF 532
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++W MI G+A++ + + + + +I GVK + VT+VAIL+ CSH GLV
Sbjct: 533 NFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVS 592
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
FNSM DH++KPK C+ MP++ D++VW + +
Sbjct: 593 EGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGA 652
Query: 143 CQVHSNVRLAKKAA 156
C+VHSN L K AA
Sbjct: 653 CRVHSNTELGKLAA 666
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 24/119 (20%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F ++V S+CA+L +L LG+Q+ + ++ G +D V + +++Y C
Sbjct: 269 KFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRK 326
Query: 55 ----------VTWNEMIHGYAEN-EYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSH 101
++W +I GY +N +AI+L+ ++I G V+ + TF + C +
Sbjct: 327 VFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F++ +C LS +G+Q+L + K G ++ V ++ I+++
Sbjct: 369 VEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQ 428
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N + G N EQA L +I + TF ++L+ ++ G
Sbjct: 429 RAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVG 488
Query: 104 LVYAEVEI 111
+ +I
Sbjct: 489 SIRKGEQI 496
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG------- 54
P + +T V+ +C+ + +GR L ++K G + +D+ VG + I+++
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTW MI + + +AI + D++ SG + D T ++ + C+
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAE 281
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 20/118 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F+++L SC + LG+ + R+++ D + ++ I++Y G
Sbjct: 65 FSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMR 124
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ M+ Y N AI ++ + + G+ + + A++ CS+S V
Sbjct: 125 RFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFV 182
>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
Length = 492
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 98/194 (50%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
QF ++V+ +CA L++L GRQ+ + + G+G + FV SA +++Y CG
Sbjct: 199 NQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCGSIEEAYVLF 258
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V WN +I G+A++ + ++L++++ +G++ D VT+VA+L+ C H GLV
Sbjct: 259 CNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLSACVHVGLVD 318
Query: 107 AEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDLVSS 142
F+ M +H V P L MP+ +WG L++S
Sbjct: 319 KGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHELMTKMPFAATASMWGSLLAS 378
Query: 143 CQVHSNVRLAKKAA 156
C++H N+ LA+ AA
Sbjct: 379 CRIHGNLELAEIAA 392
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++F ++V+ +CA +F RQ+ +K D+FVG+A I++Y CG
Sbjct: 98 SEFTVSSVVCACAAKGDVFFCRQLHAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVF 157
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTW+ ++ G+ +NE E+ + L+ G++++ +++ C+
Sbjct: 158 EGMPERNDVTWSSIVAGFVQNELYEEGLVLFARGKEMGLENNQFMISSVIRACA 211
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 17/114 (14%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++L CAK G+ ++++ G D + +N+Y CG
Sbjct: 3 SLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPER 62
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V+WN MI +N E+AI ++ ++ G T +++ C+ G V+
Sbjct: 63 SMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVF 116
>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Glycine max]
Length = 711
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 42/192 (21%)
Query: 6 FP-FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
FP +VLS C L+SL G+Q+ ++V+ + D++V S I +Y CG
Sbjct: 338 FPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFN 397
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V WN MI GY+++ E+A++++ D+ +SGV D VTF+ +L+ CS+SG V
Sbjct: 398 RFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKE 457
Query: 108 EVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSC 143
+E+F +M+ ++V+P CL MP + D +VWG L+ +C
Sbjct: 458 GLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGAC 517
Query: 144 QVHSNVRLAKKA 155
+ H + LA+ A
Sbjct: 518 RTHMKLDLAEVA 529
>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 590
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 103/195 (52%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +VL++C+ L+SL GR+ ++K GY + I + +A I +YC CG
Sbjct: 297 PDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELA 356
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI +A + + ++A++ + ++ ++ V+ DG+TF+++L+ C H+G V
Sbjct: 357 FRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKV 416
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ + FNSM +++ P+ CL MP++ D +WG L++
Sbjct: 417 HESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLA 476
Query: 142 SCQVHSNVRLAKKAA 156
+C VH NV+L + AA
Sbjct: 477 ACHVHLNVKLGELAA 491
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 48 NIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
I C +WN MI GYA+N E+A+ L+ ++ G++ D T +++LT CS
Sbjct: 258 QIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACS 310
>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 100/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P +F F+ VL++CA ++ LG+Q+ + + G+ F S +++Y CG
Sbjct: 319 IWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNAR 378
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I GYA+N ++A+ ++ ++ SG + D +TFV +L+ C+H+G
Sbjct: 379 RVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAG 438
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +E F+S++ H + CL MP + D +W L
Sbjct: 439 LVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASL 498
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C++H N++LAK+AA
Sbjct: 499 LGGCRIHGNLKLAKRAA 515
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+F ++ L++ A + SL LG++I I++ G D V SA ++Y CG
Sbjct: 221 NKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIF 280
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W MI Y + E+ +L+ D++ SG+ + TF +L C+
Sbjct: 281 DKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACA 334
>gi|221327716|gb|ACM17537.1| putative pentatricopeptide [Oryza australiensis]
Length = 470
Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats.
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 42/189 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKD-GYGNDIFVGSAPINIYCNCG-------------- 54
+VL+ CAK S L GR+I +V+ + +DI VG+A IN+Y CG
Sbjct: 211 SVLNICAKESELMKGREIHGMMVRCLAFDSDIAVGNALINMYAKCGRVNVSQAVFSGMQE 270
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+W+ MIH Y+ + EQA+ +Y ++++ GVK + +TF ++L+ CSHSGLV +I
Sbjct: 271 RDVVSWSTMIHSYSIHGKGEQALKVYMEMLSQGVKPNWITFTSVLSSCSHSGLVTEGQKI 330
Query: 112 FNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F SM H V P C+ MP + VWG L+S+C +H+
Sbjct: 331 FESMTKVHGVHPATEHYACMVDLLGRAGAIEEAVGLIRKMPMEPCASVWGALLSACAMHN 390
Query: 148 NVRLAKKAA 156
NV + + AA
Sbjct: 391 NVDVGEIAA 399
>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
Length = 792
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKD-GYGNDIFVGSAPINIYCNCG----- 54
V P + + LS+CA SL LGR+I +R++K+ + + + V +A +N+Y CG
Sbjct: 542 VLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETA 601
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++W M YA+ + +Q + LY +++ G++ + +TF +IL CSH+
Sbjct: 602 RSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHA 661
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
GL+ VE F M+ +HEV P C+ MPY+ D V W
Sbjct: 662 GLLARGVECFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLT 721
Query: 139 LVSSCQVHSNVRLAKKAA 156
++ SC+ HS+ AK+AA
Sbjct: 722 VLGSCKTHSDADTAKRAA 739
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 21/120 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P FT+ L +C KL G+ I RIV +D FVGSA IN+Y CG
Sbjct: 243 IQPDSITFTSALLACTKLVD---GKAIHARIVSSNMESD-FVGSALINMYARCGDVSSAR 298
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W ++ Y + + +A+ LY + GV DGVT+V L C+ G
Sbjct: 299 QAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLG 358
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 19/135 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+ + T L +CA L +L G+ I +R+ + G+ + V +A + +Y CG
Sbjct: 340 VHADGVTYVTALGACASLGALKEGKAIHSRVFECGF-QSLVVHTALLTMYAKCGELDAAR 398
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
W MI YA+ + ++A+ LY ++A G + + TF +L CS S
Sbjct: 399 AVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSS 458
Query: 103 GLVYAEVEIFNSMEH 117
G + A ++I +E+
Sbjct: 459 GDLEAGMKIHGHVEN 473
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++ F+ VL++C+ L G +I + +++ V +A + +Y CG
Sbjct: 443 PNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAKCGSLELAKSA 502
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI YA++ +A+ LY+ + + GV D VT + L+ C+ SG +
Sbjct: 503 FEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSL 562
Query: 106 YAEVEI 111
EI
Sbjct: 563 QLGREI 568
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 19/117 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY--GNDIFVGSAPINIYCNCG------ 54
P + + VL SC+ + SL R+I I++ +++ + +A +N+Y CG
Sbjct: 142 PDKITYFIVLGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEAR 201
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W MI YA N + ++A+ LY+ + A G++ D +TF + L C+
Sbjct: 202 KVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACT 258
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +L C +L SL G+ + +++ G+G + F+G+ I +Y NCG
Sbjct: 45 YDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFA 104
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEV 109
+N+M+ Y +N +A+ LY + G + D +T+ +L CS G +
Sbjct: 105 SIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAR 164
Query: 110 EIFNSM 115
EI S+
Sbjct: 165 EIHASI 170
>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
Length = 752
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q F LSSCA L++L +G+Q+ ++K GY D+FV +A I +Y CG
Sbjct: 214 PDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELL 273
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I YA N +A+ L+ + GV D VTFV IL+ CSH GL+
Sbjct: 274 FKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLI 333
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+++F M + ++P C+ M + +WG L+
Sbjct: 334 DQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLG 393
Query: 142 SCQVHSNVRLAKKAA 156
+C++H N+ LAK AA
Sbjct: 394 ACRIHGNLELAKFAA 408
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + VL +CA L+S+ LG+QI +I+K +D+++ S +++Y CG
Sbjct: 576 VKPDNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSA 635
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI GYA++ E+A+ ++ + V+ + TFV+IL C+H G
Sbjct: 636 LVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMG 695
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+ + FN+M ++ ++P+ C+ MP++ D V+W L
Sbjct: 696 FIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTL 755
Query: 140 VSSCQVHSNVRLAKKA 155
+S C++H N+ +A+KA
Sbjct: 756 LSICKIHGNIEIAEKA 771
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 60/116 (51%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P QF + +VL +C+ +L G +I RI+K G G D FVG A I++YC CG
Sbjct: 477 PDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKI 536
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I G+ ++ E A S + +++ VK D T+ +L C++
Sbjct: 537 HDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACAN 592
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT------- 56
+Q + +V SCA LS+L +G Q+ +K +G+DI VG+A +++Y CG
Sbjct: 276 SQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIF 335
Query: 57 ----------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+N +I G NE +A+ ++ ++ SG+ + ++ + C+
Sbjct: 336 NSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACA 389
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC---------- 53
+ + S+CA + GRQ+ + VK ++I V ++ +++Y C
Sbjct: 377 NEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMF 436
Query: 54 -------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V+WN +I + +N E+ ++L+ ++ ++ D T+ ++L CS +
Sbjct: 437 DEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALN 496
Query: 107 AEVEIFNSM 115
+ +EI N +
Sbjct: 497 SGMEIHNRI 505
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q F VL +C+ L LG Q+ IV+ G+ D+ GSA +++Y C
Sbjct: 176 QTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFS 235
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W+ +I G +N+ + L+K++ G+ + ++ C+
Sbjct: 236 EIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCA 288
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 3 PTQF-PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
PT+ F+ ++ C+ +SL G+Q R++ G+ D+++ + + +Y C
Sbjct: 40 PTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYK 99
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+++N MI GYA+ + A + D K D V++ ++L+ +G
Sbjct: 100 VFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDT----PKRDVVSWNSMLSGFLQNGE 155
Query: 105 VYAEVEIFNSMEHDHEV 121
+++F M EV
Sbjct: 156 CRKSIDVFLDMGRSEEV 172
>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
Length = 1301
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 104/195 (53%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +VL++C+ L+SL GR+ ++K GY + I + +A I +YC CG
Sbjct: 297 PDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELA 356
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI +A + + ++A++ + ++ ++ V+ DG+TF+++L+ C H+G V
Sbjct: 357 FRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKV 416
Query: 106 YAEVEIFNSMEHDHEV--KPK---CL-------------------MPYKDDLVVWGDLVS 141
+ + FNSM +++ +P+ CL MP++ D +WG L++
Sbjct: 417 HESLNWFNSMIXSYKIVXRPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLA 476
Query: 142 SCQVHSNVRLAKKAA 156
+C VH NV+L + AA
Sbjct: 477 ACHVHLNVKLGELAA 491
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 49 IYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
I C +WN MI GYA+N E+A+ L+ ++ G++ D T +++LT CS
Sbjct: 259 IPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACS 310
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 106/199 (53%), Gaps = 45/199 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKD---GYGNDIFVGSAPINIYCNCG----- 54
P+ F F +VLS+CA L+ + G++I I++ Y +IF+ +A I++YC CG
Sbjct: 278 PSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSA 337
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN +I G+A+N + E+++++++ +I + ++ + VTF+ +L+ C H+
Sbjct: 338 TTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHT 397
Query: 103 GLVYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLV-VWG 137
GLV + I +SME D+ V P+ P D V +WG
Sbjct: 398 GLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKGSDHVGMWG 457
Query: 138 DLVSSCQVHSNVRLAKKAA 156
L+ +C++H N+ LA++AA
Sbjct: 458 ALLGACRIHGNMDLARRAA 476
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 66/170 (38%), Gaps = 53/170 (31%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F +++ SCA L + L RQ+ + G ++I +G+A I+ Y CG
Sbjct: 148 EFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFSIFS 207
Query: 55 --------------------------------------VTWNEMIHGYAENEYVEQAISL 76
V+W +I G+A+N ++A+ L
Sbjct: 208 RMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHL 267
Query: 77 YKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCL 126
++ + G+ TF ++L+ C+ L+ EI H H ++ C+
Sbjct: 268 FEQMREEGIPPSAFTFASVLSACADLALIARGKEI-----HGHIIRSTCI 312
>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Glycine max]
Length = 820
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 100/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V + F + +LS A + ++ G QI IVK G+G ++ + +A I++Y CG
Sbjct: 444 VGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAAL 503
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TW +I G+A++ + +A+ L+ +++ GVK + VT++A+L+ CSH G
Sbjct: 504 QVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVG 563
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ + FNSM ++H + P+ C+ MP+ D +VW
Sbjct: 564 LIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTF 623
Query: 140 VSSCQVHSNVRLAKKAA 156
+ SC+VH N +L + AA
Sbjct: 624 LGSCRVHRNTKLGEHAA 640
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F T++LS+C +L LG+Q+ + +++ G +D+FVG +++Y
Sbjct: 246 PDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKI 305
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++W +I GY ++ ++AI L+ +++ V + TF ++L C+
Sbjct: 306 FNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACA 360
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND-IFVGSAPINIYCNCG----- 54
+YP ++ FT +L SC+ G I ++K GY + + VG A I+++ G
Sbjct: 141 IYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQS 200
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTW MI Y++ ++ A+ L+ ++ S D T ++L+ C
Sbjct: 201 ARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSAC-- 258
Query: 102 SGLVYAEVEIFN 113
E+E F+
Sbjct: 259 -----VELEFFS 265
Score = 38.5 bits (88), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV 55
V P F F++VL +CA L +G+Q+ + +K G VG++ IN+Y G
Sbjct: 345 VTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGT 399
>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++L+ CA L+ L GR++ +++ + D+F SA I +Y CG
Sbjct: 329 VRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAK 388
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ EQA+ ++ D+ +G+ DG+T++ LT CS++G
Sbjct: 389 RVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTG 448
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
V EIFNSM + ++P C+ MP + D V+WG L
Sbjct: 449 KVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGAL 508
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N +A+ AA
Sbjct: 509 MGACRMHRNAEIAEVAA 525
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 32/45 (71%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
TW+ MI Y +NE++ +A+S +++++ GV+ + + ++ILT C+
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCA 344
>gi|224140139|ref|XP_002323442.1| predicted protein [Populus trichocarpa]
gi|222868072|gb|EEF05203.1| predicted protein [Populus trichocarpa]
Length = 526
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 99/195 (50%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F FT++LS+C +L GR +I++ G+ + + + +A +++YC CG
Sbjct: 227 PNDFTFTSLLSACTGSGALGQGRSAHCQIIEMGFVSYLHIANALVSMYCKCGNVEDAFHI 286
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI GYA++ Q I L++ + + GVK D +TF+ +L+ C H+G V
Sbjct: 287 FENMVGKDIVSWNSMIAGYAQHGLAVQGIGLFERMKSQGVKPDAITFLGVLSSCRHAGFV 346
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
FNSM ++ VKP+ C+ MP + V+WG LVS
Sbjct: 347 EGGRNYFNSMV-EYGVKPELDHYSCIVDLLGRAGLLEEAQYFIERMPVSPNAVIWGSLVS 405
Query: 142 SCQVHSNVRLAKKAA 156
SC++H +V + +AA
Sbjct: 406 SCRLHGSVWIGIQAA 420
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +SSCA L G Q + G+ + ++GS+ + Y CG
Sbjct: 131 LSNAVSSCASTRDLRGGIQYHCLAISAGFIANAYIGSSLVTFYGKCGELDNAYKVFKEMP 190
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G+A++ V+ + LY + S +K + TF ++L+ C+ SG
Sbjct: 191 VRNVVSWTAIISGFAQDWQVDMCLQLYCLMRNSTLKPNDFTFTSLLSACTGSG 243
>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 511
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P +VL +CA L L +GR++ ++G+ ++I+V +A I +Y CG+
Sbjct: 211 VKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAK 270
Query: 56 -------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+WN MI A + ++A++L+ ++ G K D VTFV +L C H
Sbjct: 271 RLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHG 330
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
G+V E+F SME H++ PK C+ MP K D VVWG
Sbjct: 331 GMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGT 390
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C H NV +A+ A+
Sbjct: 391 LLGACSFHGNVEIAEIAS 408
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 22/118 (18%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYA 65
F TT++++ AKL +L R++ + K P+ WN MI GY
Sbjct: 118 FCCTTLITAYAKLGALCCARRVFDEMSKR---------DVPV---------WNAMITGYQ 159
Query: 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP 123
++ A+ L+ + V ++ +++ S +G +++F ME D VKP
Sbjct: 160 RRGDMKAAMELFDSMPRKNV----TSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKP 213
>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P +VL +CA L L +GR++ ++G+ ++I+V +A I +Y CG+
Sbjct: 204 VKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAK 263
Query: 56 -------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+WN MI A + ++A++L+ ++ G K D VTFV +L C H
Sbjct: 264 RLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHG 323
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
G+V E+F SME H++ PK C+ MP K D VVWG
Sbjct: 324 GMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGT 383
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C H NV +A+ A+
Sbjct: 384 LLGACSFHGNVEIAEIAS 401
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 22/115 (19%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENE 68
TT++++ AKL +L R++ + K D+ V WN MI GY
Sbjct: 114 TTLITAYAKLGALCCARRVFDEMSK----RDVPV--------------WNAMITGYQRRG 155
Query: 69 YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP 123
++ A+ L+ + V ++ +++ S +G +++F ME D VKP
Sbjct: 156 DMKAAMELFDSMPRKNV----TSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKP 206
>gi|356546597|ref|XP_003541711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Glycine max]
Length = 525
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 103/196 (52%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F +V+ +C+ L++ +G+Q+ ++++K + DI +GSA I++Y CG
Sbjct: 272 PNVSTFASVIGACSMLAAFEIGQQVQSQLMKTPFYADIKLGSALIDMYAKCGRVVDARRV 331
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSHSGL 104
+W MI GY +N + ++A+ L+ I G+ + VTF++ L+ C+H+GL
Sbjct: 332 FDCMLKKNVFSWTSMIDGYGKNGFPDEALQLFGKIQTEYGIVPNYVTFLSALSACAHAGL 391
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLV 140
V EIF SME+++ VKP C+ MP + +L VW L+
Sbjct: 392 VDKGWEIFQSMENEYLVKPGMEHYACMVDLLGRAGMLNQAWEFVMRMPERPNLDVWAALL 451
Query: 141 SSCQVHSNVRLAKKAA 156
SSC++H N+ +AK AA
Sbjct: 452 SSCRLHGNLEMAKLAA 467
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 24 GRQILTRIVKDGY--GNDIFVGSAPINIYCNCG---------------VTWNEMIHGYAE 66
G++I + I+K G+ +I + + + CNC +N MI GY +
Sbjct: 55 GQKIHSSILKSGFVPNTNISIKLLILYLKCNCLRYARQVFDDLRDRTLSAYNYMISGYLK 114
Query: 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
+ VE+++ L ++ SG K DG TF IL S SG A + M H +K
Sbjct: 115 QDQVEESLGLVHRLLVSGEKPDGFTFSMIL-KASTSGCNVALLGDLGRMVHTQILK 169
>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++L+ CA L+ L GR++ +++ + D+F SA I +Y CG
Sbjct: 329 VRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAK 388
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ EQA+ ++ D+ +G+ DG+T++ LT CS++G
Sbjct: 389 RVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTG 448
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
V EIFNSM + ++P C+ MP + D V+WG L
Sbjct: 449 KVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGAL 508
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N +A+ AA
Sbjct: 509 MGACRMHRNAEIAEFAA 525
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 32/45 (71%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
TW+ MI Y +NE++ +A+S +++++ GV+ + + ++ILT C+
Sbjct: 300 TWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCA 344
>gi|224054634|ref|XP_002298341.1| predicted protein [Populus trichocarpa]
gi|222845599|gb|EEE83146.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 100/196 (51%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT +TVL++CA ++++ GR+I V +DI+V SA +++Y CG
Sbjct: 179 PTSATISTVLAACATMANVRRGREIHGYAVVIRVEDDIYVRSALVDMYAKCGFISEASVL 238
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSHSGL 104
VTWN MI GYA + Y ++AI L+ + S G K D +TF A+LT CSH+G+
Sbjct: 239 FYMMPERNTVTWNSMIFGYANHGYCDEAIELFDQMEKSEGNKLDHLTFTAVLTACSHAGM 298
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V +F M+ +++ P+ C+ MP K DL VWG L+
Sbjct: 299 VEHGQSLFLLMQQKYKIVPRLEHYACMVDLLGRAGNLNEAYDMIKKMPVKPDLFVWGALL 358
Query: 141 SSCQVHSNVRLAKKAA 156
+C+ H ++ LA+ AA
Sbjct: 359 GACRNHGDIGLAEVAA 374
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+F +VL C + + GR + + I+K +D++V S+ I++Y CG
Sbjct: 9 NKFVIPSVLKCCGHVYDVQTGRILHSVILKYSIESDVYVISSLIDMYSKCGEVEKARRVF 68
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V N M+ GY ++ + ++ +L + G+K + +T+ ++++ + G
Sbjct: 69 DRMVEKDLVALNAMLSGYGQHGFAKEGFALMDKMEKLGIKPNVITWNSLISGFAQKG 125
>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
Length = 786
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 104/197 (52%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +++L++CA LS+ G+Q+ I+K G+ +DIF G++ +N+Y CG
Sbjct: 410 IKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDAS 469
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W+ MI G A++ Y ++A+ L+K ++ GV + +T V++L C+H+G
Sbjct: 470 CAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAG 529
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV FNSM+ ++P C+ MP++ + +VWG L
Sbjct: 530 LVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGAL 589
Query: 140 VSSCQVHSNVRLAKKAA 156
+ + ++H N+ L ++AA
Sbjct: 590 LGAARIHKNIDLGEQAA 606
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F ++ L +CA ++ LGRQ+ + ++K G+D F+G I++Y C
Sbjct: 210 PNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLV 269
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+ WN +I G+++NE E+A SL+ + G+ + T +L
Sbjct: 270 FKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVL 320
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+F F +VL +C L LG+Q+ +V G+ +D FV ++ + +Y CG
Sbjct: 9 NEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLF 68
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN + Y ++ +A+SL+ D++ SG++ + + +++ C+
Sbjct: 69 DAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCT 122
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F +++++ C L GR+I ++K GY +D F +A +++Y G
Sbjct: 107 IRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDAS 166
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G +EY +A+ L +++ SG+ + T + L C+
Sbjct: 167 SVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMA 226
Query: 104 L 104
L
Sbjct: 227 L 227
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
Q +TVL S A L + ++ RQI +K G+ D +V ++ I+ Y CG
Sbjct: 312 NQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVF 371
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V + ++ YA++ E+A+ LY ++ G+K D ++L C+
Sbjct: 372 EESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACA 425
>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P T VL S +++S +G QI I+K G DI V +A IN+Y CG
Sbjct: 500 IKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECAR 559
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W+ +I GYA+ ++A L++ + GVK + +TFV ILT CSH G
Sbjct: 560 KMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIG 619
Query: 104 LVYAEVEIFNSMEHDHEVKPK---------------CL---------MPYKDDLVVWGDL 139
+V ++++ +M+ D+ + P CL MP+ D+VVW L
Sbjct: 620 MVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTL 679
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+VH N+ + K+AA
Sbjct: 680 LAACKVHGNLEVGKRAA 696
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 26/156 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F F + S+C+KL GRQI +K G G+D+F G + ++Y CG
Sbjct: 299 PNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTV 358
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN +I G+A +++ S + + +G+ + VT +++L CS ++
Sbjct: 359 FYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVML 418
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
+++ H + VK M + D+ V L+S
Sbjct: 419 NHGIQV-----HSYIVK----MGFNLDIPVCNSLLS 445
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+T ++++C+ L SL GR+I ++ Y D+ + + +++Y CG
Sbjct: 101 YTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMP 160
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W MI GY+ + AI+LY ++ SG D TF +I+ CS
Sbjct: 161 LKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCS 210
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F +++ SC+ L L RQ+ ++K +G D+ +A I++Y
Sbjct: 197 PDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINV 256
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGV-KHDGVTFVAILTPCS 100
++W MI G+++ Y +A+ ++++++ V + + F + + CS
Sbjct: 257 FSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACS 312
>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
Length = 688
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 47/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY------GNDIFVGSAPINIYCNCG 54
++PT + + VL++C ++ L LG+Q ++K+G+ +D+FVG++ +++Y G
Sbjct: 381 IWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTG 440
Query: 55 -----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI GYA+N + A+ L++ ++ S D VT + +L+
Sbjct: 441 SIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLS 500
Query: 98 PCSHSGLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDL 133
C HSGLV F+ M DH + P C+ MP + D
Sbjct: 501 ACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDS 560
Query: 134 VVWGDLVSSCQVHSNVRLAKKAA 156
V+W L+ +C++H NV L ++ A
Sbjct: 561 VLWASLLGACRLHKNVELGERTA 583
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 25/152 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F + LS+CA L G Q+ + + + +D+ +G+A +++Y C
Sbjct: 152 YSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDA 211
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN +I Y +N V +A+ L+ +++A+G D VT ++++ C +GL AE
Sbjct: 212 MPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSAC--AGLA-AE 268
Query: 109 VEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140
E H H VK L +DD+V+ LV
Sbjct: 269 RE--GRQVHAHMVKRDRL---RDDMVLNNALV 295
Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 64/135 (47%), Gaps = 22/135 (16%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCGVTW--- 57
+P + ++V+S+CA L++ GRQ+ +VK D +D+ + +A +++Y CG TW
Sbjct: 249 FPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEAR 308
Query: 58 --------------NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++ GYA++ VE A ++ ++ V + + ++ + +G
Sbjct: 309 CIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNV----IAWNVLIAAYAQNG 364
Query: 104 LVYAEVEIFNSMEHD 118
+ +F ++ D
Sbjct: 365 EEEEAIRLFVQLKRD 379
>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P T VL S +++S +G QI I+K G DI V +A IN+Y CG
Sbjct: 500 IKPDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNALINMYTKCGSLECAR 559
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W+ +I GYA+ ++A L++ + GVK + +TFV ILT CSH G
Sbjct: 560 KMFDSIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIG 619
Query: 104 LVYAEVEIFNSMEHDHEVKPK---------------CL---------MPYKDDLVVWGDL 139
+V ++++ +M+ D+ + P CL MP+ D+VVW L
Sbjct: 620 MVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKTL 679
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+VH N+ + K+AA
Sbjct: 680 LAACKVHGNLEVGKRAA 696
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 26/156 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F F + S+C+KL GRQI +K G G+D+F G + ++Y CG
Sbjct: 299 PNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTV 358
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN +I G+A +++ S + + +G+ + VT +++L CS ++
Sbjct: 359 FYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVML 418
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
+++ H + VK M + D+ V L+S
Sbjct: 419 NHGIQV-----HSYIVK----MGFNLDIPVCNSLLS 445
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+T ++++C+ L SL GR+I ++ Y D+ + + +++Y CG
Sbjct: 101 YTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSMP 160
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W MI GY+ + AI+LY ++ SG D TF +I+ CS
Sbjct: 161 LKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCS 210
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F +++ SC+ L L RQ+ ++K +G D+ +A I++Y
Sbjct: 197 PDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINV 256
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGV-KHDGVTFVAILTPCS 100
++W MI G+++ Y +A+ ++++++ V + + F + + CS
Sbjct: 257 FSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAFSACS 312
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T+VL C+ LS+L LG+Q+ + K +D G++ +++Y CG
Sbjct: 259 VKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAW 318
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ ++A+ L+ ++ G+K D +TFVA+L C+H+G
Sbjct: 319 ELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAG 378
Query: 104 LVYAEVEIFNSMEHDH--EVKPK---CL-------------------MPYKDDLVVWGDL 139
LV V+ FN+M D E KP+ C+ MP+K ++G L
Sbjct: 379 LVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTL 438
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N+ LA+ AA
Sbjct: 439 LGACRIHKNLNLAEFAA 455
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTWN MI GY EN E + L++ ++ +GVK + ++ ++L CS+
Sbjct: 229 VTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSN 275
>gi|91805879|gb|ABE65668.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 520
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 41/196 (20%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P F +V+ +CA L+S +G+Q+ +I+K G I +GS+ +++Y CG
Sbjct: 270 HPNISTFASVIGACAVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARR 329
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+W MI GY +N E+A+ L+ + ++ + VTF+ L+ CSHSGL
Sbjct: 330 VFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGL 389
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V EIF SM+ D+ +KPK C+ MP + D +W L+
Sbjct: 390 VDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALL 449
Query: 141 SSCQVHSNVRLAKKAA 156
SSC +H NV LA AA
Sbjct: 450 SSCNLHGNVELASIAA 465
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 99/196 (50%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P + VL++C++L L +G+ + GY ++FVG+A I++Y CGV
Sbjct: 323 VVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKAL 382
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN +I+G A + +V A+SL++ + +G + DGVTFV IL+ C+H G
Sbjct: 383 DVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSACTHMG 442
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F SM D+ + P+ C+ MP + D V+W L
Sbjct: 443 LVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVIWAAL 502
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C+++ NV +A+ A
Sbjct: 503 LGACRMYKNVEMAELA 518
>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Brachypodium distachyon]
Length = 770
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 101/195 (51%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F+++LS C+ + +L G QI + +K G+ +D+ V SA +N+Y CG
Sbjct: 391 PDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYATKA 450
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW MI GY+++ AI L++D+I +G K + +TFV++L+ CS++GLV
Sbjct: 451 FVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSACSYAGLV 510
Query: 106 YAEVEIFNSMEHDHEVKP-----KCLMP-------------------YKDDLVVWGDLVS 141
+ F+ M++++ ++P C++ ++ + +W LV+
Sbjct: 511 EEAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAYAFIKRKGFEPNEAIWSSLVA 570
Query: 142 SCQVHSNVRLAKKAA 156
C+ H N+ LA AA
Sbjct: 571 GCRSHGNMELAFYAA 585
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 28/128 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F T+V+S C + LG+Q+ K G ++ V ++ + +Y G
Sbjct: 277 VMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLRKGETEEAM 336
Query: 55 -----------VTWNEMIHGYAE-----------NEYVEQAISLYKDIIASGVKHDGVTF 92
+TWN MI G+A+ QA+ +++D++ S +K D TF
Sbjct: 337 RLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALKIFRDLVRSAMKPDLFTF 396
Query: 93 VAILTPCS 100
+IL+ CS
Sbjct: 397 SSILSVCS 404
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP+ + +LS+C ++ LG+Q+ +K G + +G++ +Y G
Sbjct: 176 YPSDYTLGGMLSACVASHNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIR 235
Query: 55 ----------VTWNEMIHGYAENE-YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+TW MI AE+E Y E ++L+ D++ V + T ++++ C S
Sbjct: 236 AFKRIPDKNVITWTTMISACAEDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTS 294
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 17/112 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +L C + SL + + +VK G DIFV ++ +N+Y CG
Sbjct: 81 YVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMP 140
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
VTW +I GY N A+ ++ +++ G T +L+ C S
Sbjct: 141 EKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVAS 192
>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g11460
gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F +VLSSCA L + +G ++ + +G+ ++FV +A I++Y CG
Sbjct: 253 VCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKAR 312
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI Y + E + L+ D+I G++ DG FV +L+ CSHSG
Sbjct: 313 AVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSG 372
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L +E+F +M+ +++++P CL MP + D VWG L
Sbjct: 373 LTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGAL 432
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C++H NV +A+ A
Sbjct: 433 LGACKIHKNVDMAELA 448
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F +L SCA LS G+Q+ + K G + FV +A I++YC CG
Sbjct: 51 PDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKV 110
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V +N +I GY N V A +++ + +GV D VT + ++ C+
Sbjct: 111 FEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCT 167
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 17/100 (17%)
Query: 21 LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHG 63
L+LGR + + VK G +++ V ++ I +Y CG +TWN +I G
Sbjct: 172 LWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISG 231
Query: 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
Y++N + LY+ + +SGV D T V++L+ C+H G
Sbjct: 232 YSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLG 271
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F++V+ +CA L++L LG+Q+ +++ G+G +IF+ SA +++Y CG
Sbjct: 303 VRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAAR 362
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G+A + + +A+SL++++ GVK + V FVA+LT CSH G
Sbjct: 363 KIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVG 422
Query: 104 LVYAEVEIFNSM--------EHDHEVKPKCLMPYKDDL----------------VVWGDL 139
LV FNSM E +H L+ L VW L
Sbjct: 423 LVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTL 482
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC VH N+ LA+K A
Sbjct: 483 LSSCSVHKNLELAEKVA 499
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 59/116 (50%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F ++VL ++ + G++I +++ G +D+++GS+ +++Y
Sbjct: 204 PDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERV 263
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++WN ++ GY +N +A+ L++ ++++ V+ V F +++ C+H
Sbjct: 264 FSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAH 319
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P F +VL SC + L G + IV+ G D++ G+A +N+Y
Sbjct: 103 PDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKV 162
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V++N +I GYA++ E A+ + +++ S +K D T ++L
Sbjct: 163 FELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVL 213
>gi|255586231|ref|XP_002533770.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526307|gb|EEF28615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 617
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 67/101 (66%), Gaps = 17/101 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PTQF + T+LS CAKLSSL G+QI +I K+G+ ND++VGSA +++YC CG
Sbjct: 516 PTQFSYATILSCCAKLSSLIHGKQIHAQIAKEGFVNDVYVGSALVDMYCKCGEVGEARQF 575
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86
VTWNEMIHGYA+N + +A+ LY+D+I S ++
Sbjct: 576 FDIMSSKNTVTWNEMIHGYAQNGHGHEAVCLYRDMIESAIQ 616
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT F ++LS+C L ++ GR+ T IVK G N+++V +A +++Y CG
Sbjct: 134 LMPTHFTLASILSACGTLLNMESGRKCHTLIVKIGLDNNVYVSNALLSVYSKCGLVRDAV 193
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VT+ M+ G+ + + V +A+ +++ + G+ D V+ ++L C+ G
Sbjct: 194 RLFEEMQEPNEVTYTAMMSGFTQTDRVVEALEMFRLMCRQGICIDSVSLSSVLGVCTKGG 253
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +LSSCA + L G+Q+ K + DI+V S I +Y CG
Sbjct: 413 VKPDRTTLAIILSSCAGMELLEAGKQVHAISQKAAFHEDIYVASGLIGMYSKCGKMDIAD 472
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH-S 102
V WN MI G + N +A++ ++ + SG+ ++ IL+ C+ S
Sbjct: 473 CIFKKISKQDTVCWNSMIAGLSLNSLDNEALAFFQQMRQSGMSPTQFSYATILSCCAKLS 532
Query: 103 GLVYAE 108
L++ +
Sbjct: 533 SLIHGK 538
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 27/138 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + + +L++C + + +GRQI + G +WN M+
Sbjct: 349 PDEVTYINMLTACVRSGDIEIGRQIFDCMACPGVS------------------SWNGMLS 390
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
GY + E +AI L++++ VK D T IL+ C A +E+ + + H +
Sbjct: 391 GYFQIENHNEAIKLFREMQFQNVKPDRTTLAIILSSC-------AGMELLEAGKQVHAIS 443
Query: 123 PKCLMPYKDDLVVWGDLV 140
K + +D+ V L+
Sbjct: 444 QKA--AFHEDIYVASGLI 459
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 19 SSLFLGRQILTRIVKDG---YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAIS 75
S L L +L KDG ++F +++ V+WN MI GY + +AI
Sbjct: 283 SDLHLCNSLLDMYAKDGDMDSAEEVFANLPEMSV-----VSWNVMIAGYGQKCKSGKAIE 337
Query: 76 LYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
+ + + G + D VT++ +LT C SG + +IF+ M
Sbjct: 338 YLQRMQSCGFEPDEVTYINMLTACVRSGDIEIGRQIFDCM 377
>gi|357518009|ref|XP_003629293.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355523315|gb|AET03769.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 672
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F F +V+S+CA SSL LG Q+ + + G +D + ++ ++ YC CG
Sbjct: 427 KFSFASVISACAIKSSLELGEQLFGKAITLGLESDQIICTSLVDFYCKCGLVEMGRKVFD 486
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+WN M+ GYA N Y +A++L+ ++ SGV+ +TF IL+ C H GLV
Sbjct: 487 GMIKTDEVSWNTMLMGYATNGYGIEALTLFNEMGYSGVRPSAITFTGILSACDHCGLVEE 546
Query: 108 EVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSC 143
++F +M+HD+++ P C+ MP++ D +W ++ C
Sbjct: 547 GRDLFRTMKHDYDINPGIEHYSCMVDLFARVGCFGEAMYLIEEMPFQADANMWLSVLRGC 606
Query: 144 QVHSNVRLAKKAA 156
H N + K AA
Sbjct: 607 VSHGNKTIGKMAA 619
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 71/197 (36%), Gaps = 62/197 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG--NDIFVGSAPINIYCNCG---- 54
V+ F +TV +CA L +L G+Q+ R+ DG+ D + S+ +N Y CG
Sbjct: 157 VHRDAFVLSTVFGACADLFALDCGKQVHARVFIDGFEFEQDKVLCSSIVNFYGKCGDLDS 216
Query: 55 --------------------------------------------VTWNEMIHGYAENEYV 70
V WN +I GY N
Sbjct: 217 AARVVGFVKEVDDFSLSALVSGYANAGRMSDARKVFDNKVDPCSVLWNSIISGYVSNGEE 276
Query: 71 EQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYK 130
+A++L+ + +GV D IL+ S VE+ M HDH K +
Sbjct: 277 MEALALFNKMRRNGVWGDFSAVANILSISSS----LLNVELVKQM-HDHAFK----IGAT 327
Query: 131 DDLVVWGDLV---SSCQ 144
D+VV L+ S CQ
Sbjct: 328 HDIVVASTLLDAYSKCQ 344
>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Brachypodium distachyon]
Length = 564
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F T++ S+CA L+SL G+Q+ ++ YG D+ + +A +++Y CG
Sbjct: 269 LQPNCFTLTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMCNALVDMYSKCGSIANAK 328
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI GY N Y ++I L+ +I +GV D V F+ ++ C+H G
Sbjct: 329 KMFNMMDYKDKLSWTSMITGYGMNGYANESIQLFTSMIHAGVHPDHVVFLGLICACNHGG 388
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F SM ++ ++P C+ MP+ D VWG L
Sbjct: 389 LVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLARAGRLREAFDLIHRMPFAPDETVWGAL 448
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H NV L + AA
Sbjct: 449 LGACKMHKNVELGRLAA 465
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 57/113 (50%), Gaps = 23/113 (20%)
Query: 7 PFT--TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
PFT L +CA +++L +G+Q+ ++ + ++ V ++ I++YC+C
Sbjct: 176 PFTCSIALHACASIANLCVGQQLHVLCLRKAFNANLTVANSLIDMYCSCANLLDARRLFD 235
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTWN MI Y++ ++ A+ L +++ ++ + T +I + C+
Sbjct: 236 EIPERNLVTWNTMIAWYSQCNHL-MALQLLREM---NLQPNCFTLTSITSACA 284
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V W M+ GYA N A+ L++ ++A+GV + T ++LT C
Sbjct: 35 VAWTAMLSGYASNGCHSYALDLFRRMLAAGVGPNEFTLSSVLTAC 79
>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 663
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 101/196 (51%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F T++ +C++L+ LG QIL++ VK G G+D+ V ++ I +Y CG
Sbjct: 354 VRPDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGRIEEAQ 413
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN ++ GYA+N + I ++++++ +G K D +T++AIL+ CSHSG
Sbjct: 414 NLFDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSG 473
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV FNSM D + C+ MP+K + +WG L
Sbjct: 474 LVKEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNASIWGAL 533
Query: 140 VSSCQVHSNVRLAKKA 155
+S+C++H + +A+ A
Sbjct: 534 LSACRIHHDTEMAELA 549
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 48/143 (33%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F T+L C +++ +G Q+ VK G + + VG+A +++Y CG
Sbjct: 227 FILATILGVCEGETNISIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFET 286
Query: 55 -------------------------------------VTWNEMIHGYAENEYVEQAISLY 77
++WN M+ Y +N + E+ + LY
Sbjct: 287 MAAHDVISWTTMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLY 346
Query: 78 KDIIASGVKHDGVTFVAILTPCS 100
++ V+ D +TFV ++ CS
Sbjct: 347 ILMLRQEVRPDWITFVTMIGACS 369
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 27/152 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + +VLS+CA + G+ + RIV+ D+ VG+ +++Y CG+
Sbjct: 123 PNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGL------- 175
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
I K + + +H+ VT+ ++++ +H G +IF M D
Sbjct: 176 -----------IDASKRVFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKD---- 220
Query: 123 PKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
C++ D + ++ C+ +N+ + ++
Sbjct: 221 --CVIM---DNFILATILGVCEGETNISIGEQ 247
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 14 SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV-----------------T 56
+C+ + + + Q+ K G+GN+ + ++ I++Y C +
Sbjct: 2 ACSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFS 61
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
WN MI+GY++ + +AI ++ + + D V++ I++ SH GL + F M
Sbjct: 62 WNCMIYGYSKLHEMGRAIDTFRQM----PERDSVSWNTIISAFSHHGLHIQSLGTFVEM 116
>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 511
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +VL +CA L L +GR++ ++G+ ++I+V +A + +Y CG
Sbjct: 211 VKPNHITLVSVLPACANLGELEIGRRLEGYARENGFFDNIYVRNATLEMYSKCGMIDVAK 270
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++WN MI A + ++A+ LY ++ G + D VTFV +L C H
Sbjct: 271 RLFDEIGNQRNLISWNSMIGSLATHGKHDEALELYAQMLQEGERPDAVTFVGLLLACVHG 330
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
G+V E+ SME H++ PK C+ MP K D VVWG
Sbjct: 331 GMVLKGKELLKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEACDLIKTMPMKPDAVVWGT 390
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C H NV +A+ A+
Sbjct: 391 LLGACSFHGNVEIAEIAS 408
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 21/116 (18%)
Query: 25 RQILTRIVKDGYGNDIFVGSAPINIYCNCGV-----------------TWNEMIHGYAEN 67
R + ++ + G+ +D F +A I Y G WN MI GY
Sbjct: 102 RLLHSQFFRSGFESDSFCCTALITAYAKLGALCCARRVFDEMSNRDVPVWNAMITGYQRR 161
Query: 68 EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP 123
++ A+ L+ + V ++ +++ S +G + +F ME D VKP
Sbjct: 162 GDMKAAMELFDSMPNKNV----TSWTTVISGFSQNGNYSEALTMFLCMEKDKSVKP 213
>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
Length = 531
Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 99/198 (50%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKD-GYGNDIFVGSAPINIYCNCG----- 54
V P + + LS+CA SL LGR+I +R++K+ + + + V +A +N+Y CG
Sbjct: 281 VLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFQSSLMVQTALVNMYGRCGRLETA 340
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++W M YA+ + +Q + LY +++ G++ + +TF +IL CSH+
Sbjct: 341 RSMFEDMGQRDVLSWTAMTSVYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHA 400
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
GL+ VE F M+ +HEV P C+ MPY+ D V W
Sbjct: 401 GLLARGVECFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLT 460
Query: 139 LVSSCQVHSNVRLAKKAA 156
++ SC+ HS+ AK+AA
Sbjct: 461 VLGSCKTHSDADTAKRAA 478
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 21/120 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P FT+ L +C KL+ G+ I RIV +D FVGSA IN+Y CG
Sbjct: 54 IQPDSITFTSALLACTKLAD---GKAIHARIVSSNMESD-FVGSALINMYARCGDVSSAR 109
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W ++ Y + + +A+ LY + GV DGVT+V L C+ G
Sbjct: 110 QAFEKIQNKHVVCWTSLMTAYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLG 169
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 22/120 (18%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
T +L+ AK L R + R+ +++ V +A + +Y CG
Sbjct: 193 TALLTMYAKCGELDAARAVFNRLA-----SNVAVQNALVTMYAKCGSLELAKSAFEASGR 247
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN MI YA++ +A+ LY+ + + GV D VT + L+ C+ SG + EI
Sbjct: 248 KDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREI 307
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W MI YA N + ++A+ LY+ + A G++ D +TF + L C+
Sbjct: 23 AVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACT 69
>gi|413934541|gb|AFW69092.1| hypothetical protein ZEAMMB73_188982 [Zea mays]
Length = 630
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 60/194 (30%), Positives = 98/194 (50%), Gaps = 45/194 (23%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ T+L SCA LS++ LG++I R ++ D+ V SA +++Y CG
Sbjct: 348 YSLGTLLRSCAGLSAVKLGKEIHCRSMRMRGCGDVIVESALVDLYAKCGAVDYAYRVFKM 407
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+TWN MI G A+N + E+AISL+ +++ GVK D ++F+ +L CSH+G+V
Sbjct: 408 SSVRNMITWNAMICGCAQNGHGERAISLFNEMVRGGVKPDYISFIGVLFACSHTGMVEEG 467
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
FNSM D+ + P C++ ++DD +W ++ +C
Sbjct: 468 RNYFNSMSKDYGIPPGIEHYNCIVDLLSRVELLEEAEDLVNKSQFRDDSSLWAAILGACA 527
Query: 145 VHSN----VRLAKK 154
H+N VR+AKK
Sbjct: 528 THTNPDVAVRVAKK 541
Score = 38.9 bits (89), Expect = 0.74, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+P F +++S+ + GR+ ++V G ++ V S+ +++Y CG
Sbjct: 242 VWPDGCTFGSMMSALGNMKRARQGREAHAQVVTRGLCGNVIVESSTLDMYAKCGMMVDAR 301
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W ++ GY + E+ +SL++ + D + +L C+
Sbjct: 302 KVFDRMKAPNAVSWCALLGGYCQTGKHEKVLSLFRQMHMQEQDDDWYSLGTLLRSCA 358
Score = 38.1 bits (87), Expect = 1.2, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P+ + +CA L L G + V GYG+D V SA +++Y +
Sbjct: 140 VAPSAHALSASAKACAVLHDLRAGACVHGTTVVRGYGDDGVVLSALVDMYGHSGAPGDAR 199
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILT 97
G+ + +I + N++ ++A+ ++ ++ + GV DG TF ++++
Sbjct: 200 KAFEEMRAPDGICYTSLISAFVRNDWFDEALRWFQAMLRTDGVWPDGCTFGSMMS 254
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P VL +CA L++L GR+I I++ GY +D+ V A +++Y CG
Sbjct: 770 PDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLL 829
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI GY + + +AIS + ++ +G++ D +F IL CSHSGL+
Sbjct: 830 FDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLL 889
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ FNSM ++ V+PK C+ MP K D +WG L+S
Sbjct: 890 NEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLS 949
Query: 142 SCQVHSNVRLAKKAA 156
C++H +V+LA+K A
Sbjct: 950 GCRIHHDVKLAEKVA 964
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + T+++ +CA SSL GR + + ++K+G G+++ V +A IN+Y CG
Sbjct: 668 VRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEAR 727
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN MI GY++N +A+ L+ D + K D +T +L C+
Sbjct: 728 LVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLD-MQKQFKPDDITMACVLPACA 783
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 17/106 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +VL CA+ SL G+++ + I+ +G D +G+ + +Y NCG
Sbjct: 372 YCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIM 431
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
WN ++ YA+ +++SL+K + GV + TF +L
Sbjct: 432 NDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVL 477
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 17/112 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+VL + A + +L LGR + VK + ++ + +++Y CG
Sbjct: 574 LVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG 633
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+W I Y AI L+ ++ + GV+ D T +I+ C+ S
Sbjct: 634 DTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACS 685
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ FT VL A L + +++ ++K G+G++ V ++ I Y G
Sbjct: 471 YTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDE 530
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI+G N + + ++ ++ GV+ D T V++L ++ G
Sbjct: 531 LSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIG 585
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 100/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F++V+ +CA L++L LG+Q+ +++ G+G++IF+ SA +++Y CG
Sbjct: 339 VKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAAR 398
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G+A + + +A+SL++++ GVK + V FVA+LT CSH G
Sbjct: 399 KIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVG 458
Query: 104 LVYAEVEIFNSM--------EHDHEVKPKCLMPYKDDL----------------VVWGDL 139
LV FNSM E +H L+ L VW L
Sbjct: 459 LVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTL 518
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC VH N+ LA+K A
Sbjct: 519 LSSCSVHKNLELAEKVA 535
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 60/116 (51%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPIN-------------- 48
P F ++VL ++ + G++I +++ G +D+++GS+ ++
Sbjct: 240 PDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERV 299
Query: 49 ---IYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+YC G++WN ++ GY +N +A+ L++ ++ + VK V F +++ C+H
Sbjct: 300 FSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAH 355
>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
Length = 569
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
+ P ++ L C++LS+L LGRQ+ + K +D G++ I++YC CGV
Sbjct: 193 IQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGW 252
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN MI GYA++ ++A+ L+ ++I G+K D +TFVA+L C+H+G
Sbjct: 253 KLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAG 312
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
V+ F+SM D+ + K C+ MP+K V+G L
Sbjct: 313 FTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTL 372
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N +A+ A+
Sbjct: 373 LGACRIHKNTEMAEFAS 389
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAE 66
PF +V++ +++ G L RI G +F N+ VTWN MI GY E
Sbjct: 127 PFKSVVA----WTAMITGYMKLGRI---GLAERLFEKMPEKNL-----VTWNAMIAGYIE 174
Query: 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
N E + L++ ++ G++ + T + L CS
Sbjct: 175 NHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCS 208
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F++++ +CA L++L LG+Q+ I ++G+ +IF+ S+ +++Y CG
Sbjct: 336 IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAK 395
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI G A + AI L++ + G+K + V F+A+LT CSH G
Sbjct: 396 QIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGG 455
Query: 104 LVYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDL 139
LV + FNSM D + P C M +W L
Sbjct: 456 LVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATL 515
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+VH N+ +A+K A
Sbjct: 516 LSACRVHXNIDMAEKVA 532
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 49/145 (33%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+YP F +VL SCA L L LG + I++ G D++ G+A +N+Y
Sbjct: 102 LYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESG 161
Query: 55 -------------------------------------------VTWNEMIHGYAENEYVE 71
V+WN +I G A N E
Sbjct: 162 RQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYE 221
Query: 72 QAISLYKDIIASGVKHDGVTFVAIL 96
+ + + +++ + +K D T ++L
Sbjct: 222 ETLRMIREMGGANLKPDSFTLSSVL 246
>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
Length = 664
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P VL + A +++L GR ++ G+ +DI+VGSA +++Y CG
Sbjct: 288 IEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDAR 347
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GYA + E A+ L++ + +S K D VTF +L CS +G
Sbjct: 348 MIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAG 407
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
FN M+H H + P+ C+ MP++ D +WG L
Sbjct: 408 WTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSL 467
Query: 140 VSSCQVHSNVRLAKKAA 156
+ SC+VH NV LA+ AA
Sbjct: 468 LGSCRVHGNVVLAEVAA 484
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + LS+ + + +G Q+ +VK G D V +A I++Y CG
Sbjct: 154 PDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRV 213
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ N ++ G + N V +A+ L+++ + G++ + V++ +I+ C +G
Sbjct: 214 FDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRD 273
Query: 106 YAEVEIFNSMEHD----HEVKPKCLMP 128
V++F M+ + + V C++P
Sbjct: 274 LEAVDLFREMQSEGIEPNSVTIPCVLP 300
>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
Length = 698
Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F + L SC+ L+ L LGRQ+ + +++ G+ ++ FV S+ I +Y CG
Sbjct: 403 EFALSAALRSCSDLAVLRLGRQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDARKSFE 462
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V WN M+ GYA++ + L+ +++ V D VTFVA+LT SH GLV
Sbjct: 463 EADKGSSVPWNSMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDE 522
Query: 108 EVEIFNSMEHDHEV---------------------KPKCL---MPYKDDLVVWGDLVSSC 143
EI NSME +++ K K L MP++ D +VW L+ +C
Sbjct: 523 GSEILNSMETRYKIPLRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLLGAC 582
Query: 144 QVHSNVRLAKKAA 156
++H N+ LA A
Sbjct: 583 RIHGNMELASDVA 595
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Query: 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYA 65
LG Q+ + VK G +++F SA +++Y CG V+WN +I GYA
Sbjct: 113 LGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYA 172
Query: 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
E+ QA+ L+ ++ + D TF A+L
Sbjct: 173 ESRKPAQAMELFLEMQRVELVPDDATFAALL 203
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 18/119 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F +L++ S L +Q+ +I K G + V +A I Y CG
Sbjct: 194 PDDATFAALLATVEGPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFADSRRI 253
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDII-ASGVKHDGVTFVAILTPCSHSG 103
++WN M+ YA + ++A+ + ++ SGV+ D +F ++++ CS G
Sbjct: 254 FDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVCSEHG 312
Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 21/121 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLS-SLFLGRQILTRIVKDGYGNDIFVGSAPINIYC----NC-- 53
V P + FT+V+S C++ GR I + +VK G V +A I +Y NC
Sbjct: 294 VQPDMYSFTSVVSVCSEHGCDDRQGRSIHSLVVKIGLEGVTHVCNAMIAMYTRFTENCMM 353
Query: 54 --------------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN M+ GY+ + A+ ++ + A V D A L C
Sbjct: 354 EDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSC 413
Query: 100 S 100
S
Sbjct: 414 S 414
>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
Length = 370
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 41/186 (22%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+L +CA +++L G+Q+ I+K G+ D+ V + +++Y CG
Sbjct: 4 ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113
+WN MI G A++ ++A+ L++ ++ +GVK + +TFV +L+ CSH+GLV F+
Sbjct: 64 VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123
Query: 114 SMEHDHEVKPK---------------CL---------MPYKDDLVVWGDLVSSCQVHSNV 149
SM DH + PK CL MP + + VWG L+ +C+VH N+
Sbjct: 124 SMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNI 183
Query: 150 RLAKKA 155
LA++A
Sbjct: 184 ELAERA 189
>gi|42562381|ref|NP_174190.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806502|sp|Q1PFQ9.2|PPR62_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g28690, mitochondrial; Flags: Precursor
gi|332192893|gb|AEE31014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 520
Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 41/196 (20%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P F +V+ +C+ L+S +G+Q+ +I+K G I +GS+ +++Y CG
Sbjct: 270 HPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARR 329
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+W MI GY +N E+A+ L+ + ++ + VTF+ L+ CSHSGL
Sbjct: 330 VFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGL 389
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V EIF SM+ D+ +KPK C+ MP + D +W L+
Sbjct: 390 VDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALL 449
Query: 141 SSCQVHSNVRLAKKAA 156
SSC +H NV LA AA
Sbjct: 450 SSCNLHGNVELASIAA 465
>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g01510
gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q F TVL + A +SL LG+Q+ I++ G ++F GS +++Y CG
Sbjct: 452 QSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFE 511
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+WN +I +A+N E AI + +I SG++ D V+ + +LT CSH G V
Sbjct: 512 EMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQ 571
Query: 108 EVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSC 143
E F +M + + PK C+ MP++ D ++W ++++C
Sbjct: 572 GTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNAC 631
Query: 144 QVHSNVRLAKKAA 156
++H N LA++AA
Sbjct: 632 RIHKNQSLAERAA 644
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 17/108 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------------ 53
FPF T+LS A LSSL +GRQ+ + + + + VG++ +++Y C
Sbjct: 352 FPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKS 411
Query: 54 -----GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V+W +I GY + + L+ + S ++ D TF +L
Sbjct: 412 LPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVL 459
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/174 (17%), Positives = 70/174 (40%), Gaps = 31/174 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ F F+ VL + L LG+Q+ V G+ D VG+ ++ Y
Sbjct: 248 PSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRML 307
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V++N +I Y++ + E ++ ++++ G F +L+ ++
Sbjct: 308 FDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAAN---- 363
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG----DLVSSCQVHSNVRLAKKA 155
+S++ ++ + L+ D ++ G D+ + C++ L K+
Sbjct: 364 ------LSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKS 411
>gi|116830928|gb|ABK28420.1| unknown [Arabidopsis thaliana]
Length = 521
Score = 102 bits (254), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 41/196 (20%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P F +V+ +C+ L+S +G+Q+ +I+K G I +GS+ +++Y CG
Sbjct: 270 HPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARR 329
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+W MI GY +N E+A+ L+ + ++ + VTF+ L+ CSHSGL
Sbjct: 330 VFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGL 389
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V EIF SM+ D+ +KPK C+ MP + D +W L+
Sbjct: 390 VDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALL 449
Query: 141 SSCQVHSNVRLAKKAA 156
SSC +H NV LA AA
Sbjct: 450 SSCNLHGNVELASIAA 465
>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
Length = 702
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q F LSSCA +++L +G Q+ +VK GY N + V +A I +Y CG
Sbjct: 414 PDQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITMYAKCGRILEAGLV 473
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +I GYA N Y ++A+ L++++ + G+ D VTF+ IL+ C+H+G+V
Sbjct: 474 FNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMV 533
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+++F M + ++P C+ M K VWG L+
Sbjct: 534 DHGLKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVKATAGVWGALLG 593
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H N+ L + AA
Sbjct: 594 ACRAHGNLELGRLAA 608
>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
gi|194705708|gb|ACF86938.1| unknown [Zea mays]
gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
Length = 635
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F + VL +CA+ +S LG+Q+ R+ K G+ F GSA +++Y G
Sbjct: 259 ILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGDMGTAM 318
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GYA+N ++A+ + +++SG + D VTFV +L+ C+H+G
Sbjct: 319 RVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHAG 378
Query: 104 LVYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDL 139
LV + IF+S++ + ++ MP K + +W L
Sbjct: 379 LVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWASL 438
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C++H NVRLA AA
Sbjct: 439 LGGCRIHKNVRLAWWAA 455
>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F FT+ L++CA L+S+ G+QI +++ D+ VG+A +N+Y CG
Sbjct: 300 VRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAY 359
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G+ + E+A+ L++ + ASG++ D VTF+ +LT C+H+G
Sbjct: 360 DIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAG 419
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDL 139
LV FNSME + + P CL+ P+ +D VV L
Sbjct: 420 LVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSL 479
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+ ++H +V + ++ A
Sbjct: 480 LSASRLHGDVVIGERLA 496
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++ F +V+S+CA LS++ LG++I +R +K GY + FV ++ I++Y C
Sbjct: 99 PNEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSV 158
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V++N +I G+ EN+ +E+ + +K + G+ D F+ +L C+
Sbjct: 159 FTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICT 213
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+++L C+K +L G + ++K G +D+F+ + +N+Y CG
Sbjct: 6 LSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMF 65
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W+ MI GY + + AI LY + + + F ++++ C+
Sbjct: 66 EKNLVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACA 112
>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 587
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F FT+ L++CA L+S+ G+QI +++ D+ VG+A +N+Y CG
Sbjct: 300 VRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGYAY 359
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G+ + E+A+ L++ + ASG++ D VTF+ +LT C+H+G
Sbjct: 360 DIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAG 419
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDL 139
LV FNSME + + P CL+ P+ +D VV L
Sbjct: 420 LVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLVSL 479
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+ ++H +V + ++ A
Sbjct: 480 LSASRLHGDVVIGERLA 496
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++ F +V+S+CA LS++ LG++I +R +K GY + FV ++ I++Y C
Sbjct: 99 PNEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSV 158
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V++N +I G+ EN+ +E+ + +K + G+ D F+ +L C+
Sbjct: 159 FTNTPEPNCVSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICT 213
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 20/110 (18%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+++L C+K +L G + ++K G +D+F+ + +N+Y CG
Sbjct: 6 LSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMF 65
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W+ MI GY + + AI LY + + + F ++++ C+
Sbjct: 66 EKNLVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACA 112
>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +++ +C +S+L G++I ++ G +D++VGSA I++Y CG
Sbjct: 372 VEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLAR 431
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN ++ GYA + ++ + ++ ++ SG K D VTF +L+ C+ +G
Sbjct: 432 RCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNG 491
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L +NSM +H ++PK CL MP++ D VWG L
Sbjct: 492 LTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGAL 551
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC+VH+N+ L + AA
Sbjct: 552 LSSCRVHNNLSLGEIAA 568
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 17/132 (12%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------ 55
+P + VL + L + +G Q+ ++K G G+D FV SA +++Y CG
Sbjct: 237 WPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSR 296
Query: 56 -----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+ N + G + N V+ A+ ++ ++ + VT+ +I+ CS +G
Sbjct: 297 VFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGK 356
Query: 105 VYAEVEIFNSME 116
+E+F M+
Sbjct: 357 DLEALELFRDMQ 368
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 17/130 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F + + SCA L +L G+Q+ G+ D V S+ ++Y C
Sbjct: 102 PDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKL 161
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V W+ MI GY+ VE+A L+ ++ + GV+ + V++ +L ++G
Sbjct: 162 FDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFY 221
Query: 106 YAEVEIFNSM 115
V +F M
Sbjct: 222 DEAVGMFRMM 231
>gi|222631343|gb|EEE63475.1| hypothetical protein OsJ_18289 [Oryza sativa Japonica Group]
Length = 490
Score = 102 bits (253), Expect = 7e-20, Method: Composition-based stats.
Identities = 60/197 (30%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P VL + A +++L GR ++ G+ +DI+VGSA +++Y CG
Sbjct: 288 IEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDAR 347
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GYA + E A+ L++ + +S K D VTF +L CS +G
Sbjct: 348 MIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAG 407
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
FN M+H H + P+ C+ MP++ D +WG L
Sbjct: 408 WTEEGRSYFNEMQHKHGISPRMEHYSCMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSL 467
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C+VH NV LA+ AA
Sbjct: 468 LGPCRVHGNVVLAEVAA 484
Score = 50.1 bits (118), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 21/147 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + LS+ + + +G Q+ +VK G D V +A I++Y CG
Sbjct: 154 PDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRV 213
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ N ++ G + N V +A+ L+++ + G++ + V++ +I+ C +G
Sbjct: 214 FDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRD 273
Query: 106 YAEVEIFNSMEHD----HEVKPKCLMP 128
V++F M+ + + V C++P
Sbjct: 274 LEAVDLFREMQSEGIEPNSVTIPCVLP 300
>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
Length = 789
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 41/189 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F+T +S+CA L+ L LG QIL + K G+ +++ V ++ + +Y CG
Sbjct: 482 FSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIV 541
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN M+ GYA+N + I +++ ++ G D +++V++L+ CSHSG V
Sbjct: 542 MKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQY 601
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
F SM DH + P C+ MP+K + +WG L+++C++H
Sbjct: 602 YFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIH 661
Query: 147 SNVRLAKKA 155
N +LA+ A
Sbjct: 662 GNTKLAELA 670
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +VLS+C + L G + RIV+ D++ G I++Y CG
Sbjct: 244 PNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQV 303
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+W +I G A+ + E+A+ L+ + V D T +L C
Sbjct: 304 FDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVC 357
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 63/125 (50%), Gaps = 21/125 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
F + CA L S+ + R++ +++ G + IF+ + +N+Y NCG+
Sbjct: 7 FYESMKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIM 66
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+WN MI G+A++ + +A L++ + + D V++ ++++ H+G + A ++
Sbjct: 67 FPNVYSWNTMISGFADSGQMREAEKLFEKM----PERDSVSWNSMMSGYFHNGELEATIK 122
Query: 111 IFNSM 115
S+
Sbjct: 123 ASGSL 127
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 48/148 (32%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V QF TVL C + +G Q+ + G + + V +A + +Y CG
Sbjct: 343 VASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKAN 402
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
++WN M+ Y + Y E+
Sbjct: 403 HAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEE 462
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCS 100
+ +Y ++ GVK D +TF ++ C+
Sbjct: 463 GLKVYIQMLREGVKTDWITFSTSISACA 490
>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 101/193 (52%), Gaps = 42/193 (21%)
Query: 6 FP-FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
FP +VLS CA L++L GR+I ++V+ + D++V S +++Y CG
Sbjct: 412 FPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFD 471
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V WN +I GYA++ +A+ ++ D+ SG+ D VTFV +L+ CS++G V
Sbjct: 472 RFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKK 531
Query: 108 EVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSC 143
+EIFNSME ++V+ K C+ MP + D ++WG L+ +C
Sbjct: 532 GLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGAC 591
Query: 144 QVHSNVRLAKKAA 156
+ H + LA+ AA
Sbjct: 592 RTHMKLDLAEVAA 604
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 97/197 (49%), Gaps = 43/197 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q F +VL +C+ L+ L G+Q+ I K Y + FV SA IN+Y CG
Sbjct: 314 PNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKM 373
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I YA + Y ++AI+ +K++ SG K D VT+V +L+ CSH+G
Sbjct: 374 FDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAG 433
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV ++ F+ + D + + CL + K VWG L
Sbjct: 434 LVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGAL 493
Query: 140 VSSCQVHSNVRLAKKAA 156
++ C VH+NV++ K+AA
Sbjct: 494 LAGCNVHANVKIGKQAA 510
>gi|359497691|ref|XP_003635608.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like, partial [Vitis vinifera]
Length = 317
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 105/197 (53%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +VL++C+ L+SL GR+ ++K GY + I + +A I +YC CG
Sbjct: 22 MQPDHSTLVSVLTACSSLASLQEGRKTHVLVLKSGYESHISICNALITMYCKCGSILDSE 81
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI +A + + ++A++ + ++ ++ V+ DG+TF+++L+ C H+G
Sbjct: 82 LAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAG 141
Query: 104 LVYAEVEIFNSMEHDHEV--KPK---CL-------------------MPYKDDLVVWGDL 139
V+ + FNSM +++ +P+ CL MP++ D +WG L
Sbjct: 142 KVHESLNWFNSMIKSYKIVARPEHFACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGAL 201
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C VH NV+L + AA
Sbjct: 202 LAACHVHLNVKLGELAA 218
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +VL +CA L +L +G +I +GY +++V +A + +Y CG
Sbjct: 213 PNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGV 272
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+WN MI G A + ++AI L+ ++ G D VTFV +L C+H G+
Sbjct: 273 FEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGM 332
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V F SME D + PK C+ MP + D VVWG L+
Sbjct: 333 VVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLL 392
Query: 141 SSCQVHSNVRLAKKAA 156
+C H +V LA+KAA
Sbjct: 393 GACSFHGHVELAEKAA 408
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 21/138 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P + FT + S+CA LSS GR + T VK G+G D+F +A +++Y G+
Sbjct: 80 PNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQ 139
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TWN MI GYA +E A+ L++ + A V ++ A+++ + +G
Sbjct: 140 FDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNV----TSWTAMISGYAQNGQY 195
Query: 106 YAEVEIFNSMEHDHEVKP 123
+ +F ME + E++P
Sbjct: 196 AKALSMFLMMEEETEMRP 213
>gi|6691205|gb|AAF24543.1|AC007508_6 F1K23.11 [Arabidopsis thaliana]
Length = 841
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 41/196 (20%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P F +V+ +C+ L+S +G+Q+ +I+K G I +GS+ +++Y CG
Sbjct: 591 HPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARR 650
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+W MI GY +N E+A+ L+ + ++ + VTF+ L+ CSHSGL
Sbjct: 651 VFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGL 710
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V EIF SM+ D+ +KPK C+ MP + D +W L+
Sbjct: 711 VDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALL 770
Query: 141 SSCQVHSNVRLAKKAA 156
SSC +H NV LA AA
Sbjct: 771 SSCNLHGNVELASIAA 786
>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
Length = 446
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 47/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG------NDIFVGSAPINIYCNCG 54
++PT + + VL++C ++ L LG+Q ++K+G+ +D+FVG++ +++Y G
Sbjct: 139 IWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTG 198
Query: 55 -----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI GYA+N + A+ L++ ++ S D VT + +L+
Sbjct: 199 SIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLS 258
Query: 98 PCSHSGLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDL 133
C HSGLV F+ M DH + P C+ MP + D
Sbjct: 259 ACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDS 318
Query: 134 VVWGDLVSSCQVHSNVRLAKKAA 156
V+W L+ +C++H NV L ++ A
Sbjct: 319 VLWASLLGACRLHKNVELGERTA 341
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 64/135 (47%), Gaps = 22/135 (16%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCGVTWN-- 58
+P + ++V+S+CA L++ GRQ+ +VK D +D+ + +A +++Y CG TW
Sbjct: 7 FPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEAR 66
Query: 59 ---------------EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++ GYA++ VE A ++ ++ V + + ++ + +G
Sbjct: 67 CIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNV----IAWNVLIAAYAQNG 122
Query: 104 LVYAEVEIFNSMEHD 118
+ +F ++ D
Sbjct: 123 EEEEAIRLFVQLKRD 137
>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Cucumis sativus]
Length = 785
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 101/193 (52%), Gaps = 42/193 (21%)
Query: 6 FP-FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
FP +VLS CA L++L GR+I ++V+ + D++V S +++Y CG
Sbjct: 412 FPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFD 471
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V WN +I GYA++ +A+ ++ D+ SG+ D VTFV +L+ CS++G V
Sbjct: 472 RFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKK 531
Query: 108 EVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSC 143
+EIFNSME ++V+ K C+ MP + D ++WG L+ +C
Sbjct: 532 GLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGAC 591
Query: 144 QVHSNVRLAKKAA 156
+ H + LA+ AA
Sbjct: 592 RTHMKLDLAEVAA 604
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 97/197 (49%), Gaps = 43/197 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q F +VL +C+ L+ L G+Q+ I K Y + FV SA IN+Y CG
Sbjct: 335 PNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKM 394
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I YA + Y ++AI+ +K++ SG K D VT+V +L+ CSH+G
Sbjct: 395 FDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAG 454
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV ++ F+ + D + + CL + K VWG L
Sbjct: 455 LVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGAL 514
Query: 140 VSSCQVHSNVRLAKKAA 156
++ C VH+NV++ K+AA
Sbjct: 515 LAGCNVHANVKIGKQAA 531
>gi|224079119|ref|XP_002305756.1| predicted protein [Populus trichocarpa]
gi|222848720|gb|EEE86267.1| predicted protein [Populus trichocarpa]
Length = 530
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +V +C+ L+ +G+Q+ +++K G+ N + +GSA I++Y CG
Sbjct: 276 LRPNGSTFASVSGACSVLAGFEIGQQVQCQLMKSGFFNGVKMGSALIDMYSKCGRIEDAR 335
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+W MI GY +N +A+ L+ + ++ + VTF+ L+ C H+G
Sbjct: 336 RVFNYMPVRNVFSWTSMIDGYGKNGEPWEALELFHRMQQCNIEPNYVTFLGALSACGHAG 395
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV EIF+SME D+ KP+ C+ MP K + VW L
Sbjct: 396 LVTKGREIFDSMERDYSTKPRMEHYACMVDLLGRAGNLQQAWELVKGMPEKPNSDVWAAL 455
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC +H NV +A+ AA
Sbjct: 456 LSSCNMHGNVEMARVAA 472
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 27/115 (23%)
Query: 22 FLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV-----------------TWNEMIHGY 64
F G++I T I+K G+ +I + + ++ C +N MI GY
Sbjct: 59 FHGQKIHTHILKTGFRPNINISIKLLILHLKCRCLKYAHQLFDELPQRTLSAYNYMIGGY 118
Query: 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILT----------PCSHSGLVYAEV 109
E++IS+ + + G + DG TF IL P + GLV+A++
Sbjct: 119 LRQGLFEESISMVRRLDLDGERPDGFTFSMILKASTSGANVMLPRNTGGLVHAQI 173
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P +L +CA L+SL G+++ I+++G+ +D V +A +++Y CGV
Sbjct: 197 PDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLL 256
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TW MI GY + + AI+ + ++ +G++ D V+F++IL CSHSGL+
Sbjct: 257 FDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLL 316
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
FN M+ + VKPK C+ MP + D +WG L+S
Sbjct: 317 DEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLS 376
Query: 142 SCQVHSNVRLAKKAA 156
C++H +V+LA+K A
Sbjct: 377 GCRIHHDVKLAEKVA 391
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 18/117 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F TTVL +CA SL G+ + I ++ ++IFV +A +++Y CG
Sbjct: 95 VSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDAN 154
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN MI GY++N +A+SL+ D++ +K DG T IL C+
Sbjct: 155 SVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACA 210
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 17/128 (13%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
++L +CA + LGR + VK + +++Y CGV
Sbjct: 1 MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
TW +I YA ++AI L+ ++ GV D T +L C+ +G + +
Sbjct: 61 VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120
Query: 111 IFNSMEHD 118
+ N + +
Sbjct: 121 VHNYIREN 128
>gi|294462449|gb|ADE76772.1| unknown [Picea sitchensis]
Length = 232
Score = 101 bits (252), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 95/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F +VL +CA L++L G+ + I+K G+ +D+FVGS I++Y C
Sbjct: 26 VKPNAETFPSVLPACANLAALEPGKVLHLYIIKSGFESDVFVGSTLIDMYAKCSSIGDAS 85
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI YA + +QA+ L++ + S + VTFV +L+ C H+G
Sbjct: 86 KVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAG 145
Query: 104 LVYAEVEIFNSMEHDHEVKP---------------KCL---------MPYKDDLVVWGDL 139
LV + FNSM D+ + P CL MP + D VW L
Sbjct: 146 LVSEGRQYFNSMSVDYHITPVMEHYCCMVDLLGRTGCLDEAHDFINKMPIEPDTAVWQSL 205
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ H+NV L +K A
Sbjct: 206 LGACRTHANVDLGEKVA 222
Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 60 MIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
MI GYA+N Y ++A+ L++ + + VK + TF ++L C++
Sbjct: 1 MIAGYAQNGYFDEALKLFQRMQLTKVKPNAETFPSVLPACAN 42
>gi|413933352|gb|AFW67903.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 100/195 (51%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + ++VL +CA L SL +GR + IVK G ++IF+G+A ++Y G
Sbjct: 509 PGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALCDMYAKSGDLDSSRRV 568
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TW M+ G AEN + E++ISL++D+I +G+ + TF+AIL CSH GLV
Sbjct: 569 FYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLV 628
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL---------MPYKDDLVV----------WGDLVS 141
+ F +M+ H + PK C+ +P ++L++ W L+S
Sbjct: 629 EQAIHYFETMQA-HGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLS 687
Query: 142 SCQVHSNVRLAKKAA 156
+C + N + ++AA
Sbjct: 688 ACSTYRNKEIGERAA 702
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 54/156 (34%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------------- 53
F++VLS+CA L L G +I +K G ++FV S+ I++YC C
Sbjct: 382 FSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLP 441
Query: 54 ----------------------------------GVTWNEMIHGYAENEYVEQAISLYKD 79
V+WN MI GYAEN A++ +
Sbjct: 442 EKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYA 501
Query: 80 IIASGVKHDGVTFVAILTPCSH------SGLVYAEV 109
++ASG +T ++L C++ +V+AE+
Sbjct: 502 MLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEI 537
>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 593
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + V+S+CA+L S L QI ++GSA I++Y CG
Sbjct: 300 PNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSV 359
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TWN MI G A N + E AISLY+ + +GV+ + +TFVA+L C+H+GLV
Sbjct: 360 FSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLV 419
Query: 106 YAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVS 141
+ F M+ +H V P+ C M + + V+W L+S
Sbjct: 420 DQGMAFFEEMKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLS 479
Query: 142 SCQVHSNVRLAKKAA 156
SC+ H++V LAK A+
Sbjct: 480 SCRAHADVELAKLAS 494
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T+V S CAK L G+++ I +D N + V +A + +Y C
Sbjct: 200 PNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQN-VIVHTALMEMYVKCRAIDDARRE 258
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ MI GYA+N +++ L++ + A+ + + VT V +++ C+ G
Sbjct: 259 FDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLG 316
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 48/141 (34%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC------------------- 51
V SCA +S GRQ+ + G D+FV +A ++ Y
Sbjct: 76 VFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKD 135
Query: 52 ----NCGVT-------------------------WNEMIHGYAENEYVEQAISLYKDIIA 82
NC +T WN MI YA +A++L+ +++
Sbjct: 136 PIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLS 195
Query: 83 SGVKHDGVTFVAILTPCSHSG 103
G + + +T ++ + C+ SG
Sbjct: 196 EGARPNAITITSVFSICAKSG 216
>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
Group]
gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
Length = 658
Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +L + A LSSL GR++ V+ GY D FV +A +++Y CG
Sbjct: 282 LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLAR 341
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI GY + AI+L++ + SG++ D +F AIL CSHSG
Sbjct: 342 RLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSG 401
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L FN+M ++H ++PK C+ MP + D +W L
Sbjct: 402 LRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSL 461
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C++H NV+LA+K A
Sbjct: 462 LRGCRIHRNVKLAEKVA 478
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F T+ L + A SL G+ + +++G + V +A + +Y CG
Sbjct: 182 IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEAR 241
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
++WN +I GY+ + +A +L+ +++ ++ + VT IL
Sbjct: 242 FIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACIL 293
>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Cucumis sativus]
Length = 712
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F +VLS C ++ L G+Q+ ++ G V SA I +Y CG
Sbjct: 417 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKI 476
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI GYAE+ + ++AI L+++I G++ D VTF+ +LT CSH+G+V
Sbjct: 477 FMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMV 536
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
FNSM D+ + P C+ MP + D VVW L+
Sbjct: 537 DLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLR 596
Query: 142 SCQVHSNVRLAKKAA 156
+C++H +V ++AA
Sbjct: 597 ACRIHGDVDCGQRAA 611
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F+ V+S CA + L G Q+ ++ G+ N + V ++ + +Y CG
Sbjct: 314 VIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVS 373
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
+TW+ +I Y++ Y E+A + + G K + ++L+ C
Sbjct: 374 KVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVC 429
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ + L + A +L GR I T+ +K G+ + FV ++ +Y CG
Sbjct: 218 YAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRK 277
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W ++ Y + + + +K + AS V + TF A+++ C++
Sbjct: 278 MRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCAN 330
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F + L +C + G + VK G N +FVGSA +++Y G
Sbjct: 117 FLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCKVFDE 176
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW +I G Y E ++ + + S V++D + L + SG
Sbjct: 177 MPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSG 231
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + VL +CA LS+ GR+I I+++GY +D V ++ +++Y CG
Sbjct: 346 PDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHML 405
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI GY + + ++AI+L+ + +G++ D ++FV++L CSHSGLV
Sbjct: 406 FDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLV 465
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
FN M H+ +++P C+ MP D +WG L+
Sbjct: 466 DEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLC 525
Query: 142 SCQVHSNVRLAKKAA 156
C++H +V+LA+K A
Sbjct: 526 GCRIHHDVKLAEKVA 540
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + T VL+ CA+ L G+++ I ++ G DIFV +A +++Y CG
Sbjct: 242 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 301
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCS 100
++WN +I GY++N Y +A+SL+ ++ D T +L C+
Sbjct: 302 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 359
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F+ V S + L S+ G Q+ I+K G+G VG++ + Y
Sbjct: 45 YTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDE 104
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +I+GY N E+ +S++ ++ SG++ D T V++ C+ S L+
Sbjct: 105 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLI 161
Score = 38.5 bits (88), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+V + CA + LGR + + VK + + + +++Y CG
Sbjct: 150 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR 209
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V++ MI GYA +A+ L++++ G+ D T A+L C+ L+
Sbjct: 210 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLL 262
>gi|242061948|ref|XP_002452263.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
gi|241932094|gb|EES05239.1| hypothetical protein SORBIDRAFT_04g022670 [Sorghum bicolor]
Length = 603
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/203 (29%), Positives = 104/203 (51%), Gaps = 48/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND---IFVGSAPINIYCNCG--- 54
V PT F +VL +CAKL + G+++ I++ G+D IF+ +A +++Y CG
Sbjct: 304 VSPTTFALVSVLGACAKLGLVTRGKELHCSILRRSIGSDPFNIFIHNALVDMYSKCGDMT 363
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN M+ G++ N +Q+++++++++ +GV+ VTF+A+LT CS
Sbjct: 364 AAMAVFHRMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACS 423
Query: 101 HSGLVYAEVEIFNSMEHDHEVKPKC------------------LMPYKDDLV-------- 134
HSGLV I SME DH V+P+ + + DL
Sbjct: 424 HSGLVSNGRLILESME-DHGVEPRAEHYAAFIDALGRNRQLEEAIEFIKDLPSRIGPGTA 482
Query: 135 -VWGDLVSSCQVHSNVRLAKKAA 156
WG L+ +C++H N+ LA++ A
Sbjct: 483 GSWGALLGACRLHGNIELAEEVA 505
>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g47840-like [Cucumis
sativus]
Length = 712
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F +VLS C ++ L G+Q+ ++ G V SA I +Y CG
Sbjct: 417 PNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAKCGSIAEASKI 476
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI GYAE+ + ++AI L+++I G++ D VTF+ +LT CSH+G+V
Sbjct: 477 FMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMV 536
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
FNSM D+ + P C+ MP + D VVW L+
Sbjct: 537 DLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDDVVWSTLLR 596
Query: 142 SCQVHSNVRLAKKAA 156
+C++H +V ++AA
Sbjct: 597 ACRIHGDVDCGQRAA 611
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F+ V+S CA + L G Q+ ++ G+ N + V ++ + +Y CG
Sbjct: 314 VIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVS 373
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
+TW+ +I Y++ Y E+A + + G K + ++L+ C
Sbjct: 374 KVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVC 429
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 17/113 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ + L + A +L GR I T+ +K G+ + FV ++ +Y CG
Sbjct: 218 YAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHTFRK 277
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W ++ Y + + + +K + AS V + TF A+++ C++
Sbjct: 278 MRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCAN 330
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F + L +C + G + VK G N +FVGSA +++Y G
Sbjct: 117 FLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCKVFDE 176
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW +I G Y E ++ + + S V++D + L + SG
Sbjct: 177 MPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALKASADSG 231
>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 802
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F VL++CA L++ +G+++ + + GY F SA +++Y CG
Sbjct: 293 VRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETAR 352
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I GYA+N + A+ ++ ++ SG K D +TFV +L+ C+H+G
Sbjct: 353 RVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAG 412
Query: 104 LVYAEVEIFNSMEHDHEV-----KPKCL-------------------MPYKDDLVVWGDL 139
LV +E F+S++ H + C+ MP K D +W L
Sbjct: 413 LVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASL 472
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C++H N+ LA++AA
Sbjct: 473 LGGCRIHGNIELAERAA 489
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 17/94 (18%)
Query: 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAE 66
G++I +++ G D V +A +++Y CG V+W MIH E
Sbjct: 215 GKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFE 274
Query: 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ ++ SL++D++ SGV+ + TF +L C+
Sbjct: 275 DGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACA 308
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 21/133 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ ++T++++C + L LG+++ + I + + I++Y CG
Sbjct: 61 PSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQML 120
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN MI GYA +EQA L+ ++ D ++ A+++ G
Sbjct: 121 FDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEM----PHRDNFSWNAVISGYVSQGWY 176
Query: 106 YAEVEIFNSMEHD 118
+++F M+ +
Sbjct: 177 MEALDLFRMMQEN 189
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + VL +CA LS+ GR+I I+++GY +D V ++ +++Y CG
Sbjct: 497 PDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHML 556
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI GY + + ++AI+L+ + +G++ D ++FV++L CSHSGLV
Sbjct: 557 FDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLV 616
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
FN M H+ +++P C+ MP D +WG L+
Sbjct: 617 DEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLC 676
Query: 142 SCQVHSNVRLAKKAA 156
C++H +V+LA+K A
Sbjct: 677 GCRIHHDVKLAEKVA 691
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + T VL+ CA+ L G+++ I ++ G DIFV +A +++Y CG
Sbjct: 393 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCS 100
++WN +I GY++N Y +A+SL+ ++ D T +L C+
Sbjct: 453 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 510
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F+ V S + L S+ G Q+ I+K G+G VG++ + Y
Sbjct: 196 YTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDE 255
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +I+GY N E+ +S++ ++ SG++ D T V++ C+ S L+
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLI 312
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 17/100 (17%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+VL CA SL G+++ I +G+ D +GS +Y NCG
Sbjct: 99 SVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIE 158
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF 92
+ WN +++ A++ +I L+K +++SGV+ D TF
Sbjct: 159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+V + CA + LGR + + VK + + + +++Y CG
Sbjct: 301 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR 360
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V++ MI GYA +A+ L++++ G+ D T A+L C+ L+
Sbjct: 361 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLL 413
>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 642
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + V+S+CA+L S L QI ++GSA I++Y CG
Sbjct: 349 PNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSV 408
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TWN MI G A N + E AISLY+ + +GV+ + +TFVA+L C+H+GLV
Sbjct: 409 FSRMEQKGVITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLV 468
Query: 106 YAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVS 141
+ F M+ +H V P+ C M + + V+W L+S
Sbjct: 469 DQGMAFFEEMKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLS 528
Query: 142 SCQVHSNVRLAKKAA 156
SC+ H++V LAK A+
Sbjct: 529 SCRAHADVELAKLAS 543
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T+V S CAK L G+++ I +D N + V +A + +Y C
Sbjct: 249 PNAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQN-VIVHTALMEMYVKCRAIDDARRE 307
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ MI GYA+N +++ L++ + A+ + + VT V +++ C+ G
Sbjct: 308 FDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLG 365
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 48/141 (34%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC------------------- 51
V SCA +S GRQ+ + G D+FV +A ++ Y
Sbjct: 125 VFKSCALTASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKD 184
Query: 52 ----NCGVT-------------------------WNEMIHGYAENEYVEQAISLYKDIIA 82
NC +T WN MI YA +A++L+ +++
Sbjct: 185 PIPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLS 244
Query: 83 SGVKHDGVTFVAILTPCSHSG 103
G + + +T ++ + C+ SG
Sbjct: 245 EGARPNAITITSVFSICAKSG 265
>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
mitochondrial-like [Brachypodium distachyon]
Length = 706
Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F ++L+ CA L++ GR++ +++ + D+F SA I +Y CG
Sbjct: 329 IRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAK 388
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ E+A+ ++ D+ + + DG+T++ +LT CS++G
Sbjct: 389 RVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTG 448
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
V EIFNSM + ++ C+ MP + D ++WG L
Sbjct: 449 KVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGAL 508
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N +A+ AA
Sbjct: 509 MGACRMHKNAEIAEVAA 525
Score = 44.7 bits (104), Expect = 0.013, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 33/45 (73%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
TW+ MI Y +NE++ +A+S +++++ G++ + +F++ILT C+
Sbjct: 300 TWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCA 344
>gi|195647336|gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 100/195 (51%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + ++VL +CA L SL +GR + IVK G ++IF+G+A ++Y G
Sbjct: 509 PGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRV 568
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TW M+ G AEN + E++ISL++D+I +G+ + TF+AIL CSH GLV
Sbjct: 569 FYQMPEKNNITWTAMVQGLAENGFAEESISLFEDMIENGIAPNEHTFLAILFACSHCGLV 628
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL---------MPYKDDLVV----------WGDLVS 141
+ F +M+ H + PK C+ +P ++L++ W L+S
Sbjct: 629 EQAIHYFETMQA-HGIPPKSKHYTCMVDVLARAGCLPEAEELLMKVSSELDTSSWSSLLS 687
Query: 142 SCQVHSNVRLAKKAA 156
+C + N + ++AA
Sbjct: 688 ACSTYRNKEIGERAA 702
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 63/156 (40%), Gaps = 54/156 (34%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------------- 53
F++VLS+CA L L G +I +K G ++FV S+ I++YC C
Sbjct: 382 FSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLIDMYCKCKQCTYAQRVFNSLP 441
Query: 54 ----------------------------------GVTWNEMIHGYAENEYVEQAISLYKD 79
V+WN MI GYAEN A++ +
Sbjct: 442 EKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNTMISGYAENRRFGDALNYFYA 501
Query: 80 IIASGVKHDGVTFVAILTPCSH------SGLVYAEV 109
++ASG +T ++L C++ +V+AE+
Sbjct: 502 MLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEI 537
>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Brachypodium distachyon]
Length = 886
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + T+ CA + + LG QI+ VK G D V +A I +Y CG
Sbjct: 521 VIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEAR 580
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY+++ +QAI ++ DI+ G K D +++VA+L+ CSHSG
Sbjct: 581 KAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSG 640
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F+ M+ DH + P C+ MP K VWG L
Sbjct: 641 LVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGAL 700
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+ H N LA+ AA
Sbjct: 701 LSACKTHGNNDLAELAA 717
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +T+ L++CA+LSSL G+Q+ +++++ D +V SA + +Y CG
Sbjct: 287 VRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAK 346
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+W +I G+ + +++ L+ + A + D +++ C
Sbjct: 347 RVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGC 402
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 21/136 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QF T++S C + LG Q+ + +K G+ + V ++ I++Y CG
Sbjct: 392 QFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFN 451
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+W MI Y++ + +A + D+ V +T+ A+L G
Sbjct: 452 FMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNV----ITWNAMLGAYIQHGAEED 507
Query: 108 EVEIFNSMEHDHEVKP 123
+++++ M + +V P
Sbjct: 508 GLKMYSDMLTEKDVIP 523
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 22/138 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F V+ SC L + Q+L + K +D V +A +++ CG
Sbjct: 157 PNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQ 216
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ N M+ GYA++ V+ A+ ++K S + D V++ +++ S SG V
Sbjct: 217 FSRIKNPTIICRNSMLVGYAKSHGVDHALEIFK----SMPERDVVSWNMVISALSKSGRV 272
Query: 106 YAEVEIFNSMEHDHEVKP 123
+++ M H V+P
Sbjct: 273 REALDMVVDM-HGKGVRP 289
>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 611
Score = 101 bits (251), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 99/196 (50%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + FT+++++CA +++L G+Q+ RI + G+ ++ + +A I++Y CG
Sbjct: 311 PNCYTFTSLVAACANIAALNCGQQLHGRIYRRGFNKNVELANALIDMYAKCGDIPDSERV 370
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+W M+ GY + Y +A+ L+ +++SG++ D + F+A+L+ C H+GL
Sbjct: 371 FGEIEERRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGL 430
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLV 140
V ++ FN ME ++ + P C+ MP+K D WG ++
Sbjct: 431 VEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAIL 490
Query: 141 SSCQVHSNVRLAKKAA 156
+C+ H + L + A
Sbjct: 491 GACKAHKHTGLISRLA 506
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 18/148 (12%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P +F ++VL SC + L G + +VK G ++V +A +N+Y C VT
Sbjct: 109 PNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALMNMYATCSVT------ 162
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM-EHDHEV 121
+E A +++DI VK+D VT+ ++T +H G ++++ M + +V
Sbjct: 163 -------MEAAFLIFRDI---KVKND-VTWTTLITGFTHLGDGIGGLKMYKQMLLENADV 211
Query: 122 KPKCLMPYKDDLVVWGDLVSSCQVHSNV 149
P C+ + + Q+H++V
Sbjct: 212 TPYCITIAVRASASIDSVTTGKQIHASV 239
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 18/115 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
T + T + + A + S+ G+QI +VK G+ +++ V ++ ++ YC CG
Sbjct: 212 TPYCITIAVRASASIDSVTTGKQIHASVVKRGFQSNLPVMNSILDFYCRCGYLSEAKRYF 271
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+TWN +I ++ E A+ +++ + G + TF +++ C++
Sbjct: 272 HEMEDKDLITWNTLISELERSDSSE-ALLMFQRFESQGFVPNCYTFTSLVAACAN 325
>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
Length = 550
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 97/197 (49%), Gaps = 45/197 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F VL +CA LS++ GR+I +V+ G+ D+FVG+A I++Y CG
Sbjct: 174 PDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREV 233
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN MI GYA + + +A+ L+++ + K D +TFV +L+ CSH
Sbjct: 234 FDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEE-MNRVAKPDHITFVGVLSACSHG 292
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
GL+ F +M D+++ P C+ M D VWG
Sbjct: 293 GLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGA 352
Query: 139 LVSSCQVHSNVRLAKKA 155
L++SC++H+NV L + A
Sbjct: 353 LLNSCKIHANVELGEIA 369
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 22/137 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT + ++L SC ++ G+Q+ ++ G+G D + + +N+YC C
Sbjct: 73 PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
WN +I GYA N E A+ LY + G+ D TF +L C+ +
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAI 192
Query: 106 YAEVEIFNSMEHDHEVK 122
EI H+H V+
Sbjct: 193 EHGREI-----HEHVVQ 204
>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
Length = 773
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
TT+L CA++++L G++I IVK D V ++ +++Y CG
Sbjct: 281 LTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQ 340
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+WN +I GYA N + +A+ ++++I SG DG+TF+A+L+ CSH+GL
Sbjct: 341 GKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCR 400
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
+F M+ DH + P CL MP+K +WG L++SC++H
Sbjct: 401 LFEMMKMDHGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLH 460
Query: 147 SNVRLAKKAA 156
NV LA+ A
Sbjct: 461 GNVPLAEAVA 470
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
F F+ L +C+ L L GR + +++K D V +A + +Y G
Sbjct: 177 NFAFSMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFEEALRMFD 236
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I G + E V +AI ++ + G+ VT IL C+
Sbjct: 237 GMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCAR 290
>gi|242096754|ref|XP_002438867.1| hypothetical protein SORBIDRAFT_10g027503 [Sorghum bicolor]
gi|241917090|gb|EER90234.1| hypothetical protein SORBIDRAFT_10g027503 [Sorghum bicolor]
Length = 610
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/194 (30%), Positives = 97/194 (50%), Gaps = 45/194 (23%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ T+L SCA LS++ LG++I R ++ D+ V SA +++Y CG
Sbjct: 346 YSLGTLLRSCAGLSAVKLGKEIHCRFMRMRGCGDVIVESALVDLYAKCGAVEYAYRVFRR 405
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+TWN MI G A+N + E+AISL+ +++ VK D V+F+ +L CSH+G+V
Sbjct: 406 SSVRNMITWNAMICGCAQNGHGERAISLFDEMVREEVKPDYVSFIGVLFACSHTGMVEEG 465
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
FNSM D+ + P C++ ++DD +W ++ +C
Sbjct: 466 RNYFNSMSKDYGIPPGIEHYNCIVDLLSRVELLEEAEDLVNKSQFRDDSSLWAAILGACA 525
Query: 145 VHSN----VRLAKK 154
H+N VR+AKK
Sbjct: 526 THTNPDVAVRVAKK 539
Score = 40.0 bits (92), Expect = 0.34, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P+ + +CA L L G + V GY +D V SA +++Y +
Sbjct: 140 VAPSAHALSASAKACAVLRDLRAGACVHGTTVVRGYADDGVVLSALVDMYGHSGAPGDAR 199
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILT 97
G+ + +I + N++ ++A+ ++ ++A+ GV DG TF +++T
Sbjct: 200 RAFEEMRAPDGICYTSLISAFVRNDWFDEALRWFQAMLATDGVYPDGCTFGSMMT 254
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
VYP F +++++ L GR+ +++ G ++ V S+ +++Y CG
Sbjct: 242 VYPDGCTFGSMMTALGNLKRARQGREAHAQVLTRGLCGNVIVESSTLDMYAKCGMMVDAQ 301
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDI 80
V+W ++ GY ++ E +SL++ +
Sbjct: 302 KVFDRMKVRNAVSWCALLGGYCQSGKHEMVLSLFRQM 338
>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
Length = 583
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 41/194 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F F + L++C+ L+S+ G+QI +++ D+ G+A IN+Y CG
Sbjct: 300 VRPDEFTFASALAACSGLASMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKAY 359
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI G+ + + +A L+ + GVK D VTFV +LT +H+G
Sbjct: 360 YIFSKMEHQNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHAG 419
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CLM-------------------PYKDDLVVWGDL 139
LV + FNSME + + P+ CL+ P+ D VV G L
Sbjct: 420 LVDEGLVYFNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGHDTVVLGSL 479
Query: 140 VSSCQVHSNVRLAK 153
+S+C++H +V K
Sbjct: 480 LSACRLHGDVDTGK 493
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 39/182 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P ++ + +V+S+CA L L G+QI + +K G + FV +A I +Y CG
Sbjct: 97 IVPNEYVYASVISACASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKCSDAL 156
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC-SHS 102
V +N +I G+ EN+ ++ + + + G D TFV +L C S
Sbjct: 157 LAYNEALELNPVAYNALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVGLLGTCNSRD 216
Query: 103 GLVYAE---------------------VEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
L E + +++ + E + + DL+ W +S
Sbjct: 217 DLKRGELLHCQTIKLKLNSTAFIGNLIITMYSKLNLLEEAEKAFRSIEEKDLISWNTFIS 276
Query: 142 SC 143
SC
Sbjct: 277 SC 278
Score = 35.8 bits (81), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P +F F +L +C L G + + +K + F+G+ I +Y
Sbjct: 199 FPDRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTAFIGNLIITMYSKLNLLEEAEK 258
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCS 100
++WN I + E+A+ +K+++ V+ D TF + L CS
Sbjct: 259 AFRSIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALAACS 315
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 95/196 (48%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +VL++CA L L LGR + K G+ ++ V + I++Y CG
Sbjct: 138 VRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENAR 197
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W+ MI G A + E+A+ L+ ++I GVK +GVTF+ +L CSH G
Sbjct: 198 RVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMG 257
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ F SM D+ V P+ C+ MP K + VVWG L
Sbjct: 258 LIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGAL 317
Query: 140 VSSCQVHSNVRLAKKA 155
+ C+VH N+ LA++A
Sbjct: 318 LGGCKVHKNIDLAEEA 333
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 48/151 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + VL +C KLS + G+ I K G+G+++F+ + +N+Y CG
Sbjct: 6 VLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAM 65
Query: 55 -----------VTWN-------------------------------EMIHGYAENEYVEQ 72
VTWN MI G+ + +
Sbjct: 66 LLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNE 125
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
AI L+ + V+ + VT V++L C+ G
Sbjct: 126 AIDLFMKLEDEAVRPNEVTVVSVLAACADLG 156
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + VL +CA + +L LGR+I + GY +I V + I++Y CG
Sbjct: 241 LLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDAC 300
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W+ MI G A + E A++L+ +I +GVK + VTF+ IL CSH G
Sbjct: 301 RIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMG 360
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V + F SM D+ + P+ C+ MP + VVWG L
Sbjct: 361 MVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGAL 420
Query: 140 VSSCQVHSNVRLAKKA 155
+ C+VH NV+LA++A
Sbjct: 421 LGGCKVHKNVKLAEEA 436
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 49/198 (24%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + + VL +C++L + G+ + + K G +++F+ + +++Y CG
Sbjct: 109 ISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVAR 168
Query: 55 -----------VTWN-------------------------------EMIHGYAENEYVEQ 72
+TWN MI GYA+ ++
Sbjct: 169 KVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKE 228
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN-SMEHDHEVKPKCLMPYKD 131
AI L+ ++ +G+ + VT VA+L C+ G + I + S +E + D
Sbjct: 229 AIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLID 288
Query: 132 DLVVWGDLVSSCQVHSNV 149
V G L +C++ N+
Sbjct: 289 MYVKCGCLEDACRIFDNM 306
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---- 56
V P++F ++LS+CA L +L G + + + + ++ V +A I++YC CGV
Sbjct: 252 VEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAI 311
Query: 57 -------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN +I G A N Y +AI + + AS +K D V+F+ +LT C + G
Sbjct: 312 EVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSFIGVLTACKYIG 371
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
V + F+ M + +E++P C+ MP K D ++WG L
Sbjct: 372 AVGKARDYFSLMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQLIKGMPLKADFIIWGSL 431
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC+ H NV +AK+AA
Sbjct: 432 LSSCRKHGNVEIAKRAA 448
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + + +V + A+L + + G Q+ R+VK G D F+ + I +Y N G
Sbjct: 120 VLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEAR 179
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
VTWN MI GY N+ + +
Sbjct: 180 RVFDELVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLME 239
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
A+ L++ + V+ T V++L+ C+H G
Sbjct: 240 ALELFRKMQGERVEPSEFTMVSLLSACAHLG 270
>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 889
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + T+ CA + + LG QI VK G D V +A I +Y CG
Sbjct: 524 VIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEAR 583
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY+++ +QAI ++ D++ G K D +++VA+L+ CSHSG
Sbjct: 584 KIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSG 643
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F+ ++ DH V P C+ MP K VWG L
Sbjct: 644 LVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGAL 703
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+ H N LA+ AA
Sbjct: 704 LSACKTHGNNELAELAA 720
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+T+ L++CAKLSSL G+Q+ ++++ D +V SA + +Y CG
Sbjct: 297 YTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLR 356
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W +I G+ + +++ L+ + A + D I++ CS+
Sbjct: 357 DRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSN 407
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 21/136 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QF T++S C+ + L RQ+ + +K G+ + + ++ I++Y CG
Sbjct: 395 QFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFS 454
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+W M+ Y++ + +A + + V +T+ A+L G
Sbjct: 455 SMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNV----ITWNAMLGAYIQHGAEED 510
Query: 108 EVEIFNSMEHDHEVKP 123
++++++M + +V P
Sbjct: 511 GLKMYSAMLTEKDVIP 526
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 58/137 (42%), Gaps = 22/137 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT------ 56
P F F + SC L + Q+L + K G+ D V + ++++ CG
Sbjct: 160 PNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQ 219
Query: 57 -----------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
N M+ GYA++ V+ A+ L++ + + D V++ +++ S SG
Sbjct: 220 FSQIERPTVFCRNSMLAGYAKSYGVDHALELFESM----PERDVVSWNMMVSALSQSGRA 275
Query: 106 YAEVEIFNSMEHDHEVK 122
+ + M H+ V+
Sbjct: 276 REALSVAVDM-HNRGVR 291
>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
Length = 874
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 100/198 (50%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSS-LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
+ P +F ++V+ +CA S+ + GRQ +K Y + I V SA +++Y G
Sbjct: 497 IKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSA 556
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN MI GYA++ Y +AI ++ + ASG++ DGVTF+A++ C+H+
Sbjct: 557 QIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHN 616
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
GLV + F+SM DH++ P C+ MP+ +VW
Sbjct: 617 GLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRT 676
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C+VH NV L K +A
Sbjct: 677 LLGACRVHKNVELGKFSA 694
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P F F +VLS+ A +L LG+++ + VK G + +FV ++ +N+Y CG
Sbjct: 197 IWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAK 256
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN ++ G NE +A+ L+ + A+ K T+ ++ C++
Sbjct: 257 SVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCAN 314
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 18/111 (16%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
TQ + TV+ CA L L L RQ+ + ++K G+ V +A + Y CG
Sbjct: 301 TQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIF 360
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V+W +I G +N + A+ L+ + V + T+ A+L
Sbjct: 361 SMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAML 411
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG------------ 54
+ VL +C + LG Q+ VK G+ ++ G++ +++Y CG
Sbjct: 102 LSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGM 161
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW ++ G A + + ++L+ + A G+ + TF ++L+ + G
Sbjct: 162 PKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQG 215
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 21/117 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F ++ +L K S L QI +++K Y + FVG+A + Y G
Sbjct: 400 VMPNEFTYSAML----KASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDAL 455
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W+ M+ +A+ E A L+ + G+K + T +++ C+
Sbjct: 456 SIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACA 512
>gi|225217011|gb|ACN85298.1| EMB2261 putative [Oryza coarctata]
Length = 621
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ TVL +CA LSS+ G++I R ++ G ++ V SA +++Y CG
Sbjct: 338 YSLGTVLRACAGLSSVNPGKEIHCRFLRMGGWRNVVVESALVDLYAKCGAVDYAYGVFEA 397
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+TWN MI G+A+N + E+AI L+ ++ G + D ++FV +L CSH+G+V
Sbjct: 398 SIVRNTITWNAMIGGFAQNGHGERAIDLFDRMVKEGPRPDYISFVGVLFACSHTGMVEQG 457
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
+ FNSM D+ + P C++ P++DD +W ++ +
Sbjct: 458 RKYFNSMSKDYSITPGIEHYNCMVDLLSRVELLEEAEDLINKSPFRDDSSLWAAILGASA 517
Query: 145 VHSNVRLAKKAA 156
HSN +A++ A
Sbjct: 518 THSNPDVAERVA 529
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P F+ + +CA L G + I+ G+G+D V SA +++Y +
Sbjct: 132 VSPNAHAFSAAVKACAVLRDRNAGACLHGSILVRGFGDDDIVLSALVDMYGHAAAPGDAR 191
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILT 97
G+ + +I + N++ E+A+ + ++ +GV+ DG TF +++T
Sbjct: 192 KAFEEMRTPDGICYTSLISAFVRNDWFEEAVRWSRSMLMLNGVRPDGCTFGSMMT 246
>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
Length = 874
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 100/198 (50%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSS-LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
+ P +F ++V+ +CA S+ + GRQ +K Y + I V SA +++Y G
Sbjct: 497 IKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSA 556
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN MI GYA++ Y +AI ++ + ASG++ DGVTF+A++ C+H+
Sbjct: 557 QIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHN 616
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
GLV + F+SM DH++ P C+ MP+ +VW
Sbjct: 617 GLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRT 676
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C+VH NV L K +A
Sbjct: 677 LLGACRVHKNVELGKFSA 694
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P F F +VLS+ A +L LG+++ + VK G + +FV ++ +N+Y CG
Sbjct: 197 IWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAK 256
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN ++ G NE +A+ L+ + A+ K T+ ++ C++
Sbjct: 257 SVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCAN 314
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 18/111 (16%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
TQ + TV+ CA L L L RQ+ + ++K G+ V +A + Y CG
Sbjct: 301 TQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIF 360
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V+W +I G +N + A+ L+ + V + T+ A+L
Sbjct: 361 SMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAML 411
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG------------ 54
+ VL +C + LG Q+ VK G+ ++ G++ +++Y CG
Sbjct: 102 LSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGM 161
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW ++ G A + + ++L+ + A G+ + TF ++L+ + G
Sbjct: 162 PKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQG 215
>gi|357490167|ref|XP_003615371.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355516706|gb|AES98329.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 765
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F++VLS C+K+ +L G QI R +K G+ +D+ VGS+ IN+Y CG
Sbjct: 389 PDPFTFSSVLSVCSKMMALEQGEQIHARTIKTGFLSDVVVGSSMINMYNKCGSIERASKV 448
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ W MI G+A++ + +QA++L++D+ G++ + VTFV +L+ C +G+V
Sbjct: 449 FLEMSIRTMILWTTMITGFAQHGWSKQALNLFEDMKLVGIRPNLVTFVGVLSACGSAGMV 508
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
F M+ ++++KP CL M YK +W +L+
Sbjct: 509 NEAFNYFEIMQKEYKIKPVMDHYVCLVDMLVRLGQVQEAFDLIKKMDYKASEFIWSNLIV 568
Query: 142 SCQVHSNVRLAKKAA 156
C N+ L AA
Sbjct: 569 GCLSQGNLELGCDAA 583
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 28/128 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ T+ LS C ++ L LG Q+ K GY +++ V ++ + +Y CG
Sbjct: 275 VQPNEYTLTSALSQCCEVKCLELGIQVHALCTKLGYESNLRVRNSLLYLYLKCGCIVEAQ 334
Query: 55 -----------VTWNEMIHGYAENEYVE-----------QAISLYKDIIASGVKHDGVTF 92
VTWN MI G+A+ + +A++L+ + SG+K D TF
Sbjct: 335 RLFKGMNDVNLVTWNAMIAGHAQMMELSKDNLSAYQKGIEALNLFSKLNRSGMKPDPFTF 394
Query: 93 VAILTPCS 100
++L+ CS
Sbjct: 395 SSVLSVCS 402
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMI 61
YP+ + L++C L SL LG Q+ I+K D +G+A ++Y CG
Sbjct: 172 YPSNYTLAIALNACTSLHSLKLGEQLHAYIIKYHVDFDTSIGNALCSLYTKCGGK----- 226
Query: 62 HGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDH-E 120
+E ++ ++ I + D +++ A ++ C G V +F M D +
Sbjct: 227 --------LEVGLTAFRRI----KEKDVISWTAAISACGEKGEAMKGVRVFVEMLLDEVQ 274
Query: 121 VKP 123
V+P
Sbjct: 275 VQP 277
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +L C + S + I IVK G D F+ S + +Y CG
Sbjct: 76 YPPLLQQCLENCSFSSTQIIHCHIVKTGSHEDPFLSSFLVTVYAKCGRMECAQQVFDHMN 135
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDII 81
V W ++ GY +N + AI L+++++
Sbjct: 136 RRNAVAWTNLMKGYVQNSMPKHAIHLFEEML 166
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 93/198 (46%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +V S+CAKL +L +G +I + +G +++V + + +Y CG
Sbjct: 139 VRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAAR 198
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+WN M+ G A + +A+ LY ++ G++ D VTFV ++ C+H
Sbjct: 199 HVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDVTFVGLILACTHG 258
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV ++F SME + + PK C+ MP K D V+WG
Sbjct: 259 GLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWGT 318
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C HSNV A+ AA
Sbjct: 319 LLGACSFHSNVEFAEIAA 336
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 21/138 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P + FT + +CA SL G+ I T +K G+ D++ +A +++Y GV
Sbjct: 8 PNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLARQV 67
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TWN +I GY+ + +E A+ L+K + + V V++ +++ S +G+
Sbjct: 68 FDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSV----VSWTTMISGYSQNGMY 123
Query: 106 YAEVEIFNSMEHDHEVKP 123
+E+F ME D EV+P
Sbjct: 124 TKALEMFLKMEKDKEVRP 141
>gi|357117671|ref|XP_003560587.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Brachypodium distachyon]
Length = 602
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 41/196 (20%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
Y + TVL +CA LSS+ G++I R +++G D+ V SA +++Y CG
Sbjct: 337 YDDSYSLGTVLRACAGLSSVKPGKEIHCRFLRNGGWRDVVVESALVDLYAKCGAVDYACR 396
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+TWN MI G+A+N + E+AI+L+ ++ G + D ++F+ +L CSH+G+
Sbjct: 397 VFEASSVRNTITWNAMIGGFAQNGHAERAINLFNQMVREGARPDYISFIGVLFACSHNGM 456
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLV 140
V FNSM D+ + P C++ P+ +D +W ++
Sbjct: 457 VEQGRNYFNSMSKDYGIAPGIEHYNCIVDLLSRVELLEEAEDLINKSPFSNDSSLWAAIL 516
Query: 141 SSCQVHSNVRLAKKAA 156
+ SN +A++ A
Sbjct: 517 GASATQSNPDVAERVA 532
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V+P + + +CA L +G + I+ GY +D V SA +++Y +
Sbjct: 135 VFPNAHALSAAVKACAVLRDRNVGACVHGVILVRGYADDDIVLSALVDMYGHTASPGDAR 194
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILT 97
G+ + +I + N++ E+A+ ++ ++ +GV+ DG TF +++T
Sbjct: 195 KAFEEMCTPDGICYTSLISAFVRNDWFEEAVRWFRTMVTRNGVEPDGCTFGSMMT 249
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F VLS+C++L +L +GR + + + K ++FVG+A IN+Y CG
Sbjct: 274 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 333
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+T+N MI G + N QAI L++ ++ ++ VTFV +L CSH G
Sbjct: 334 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGG 393
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV EIF+SM D+ V+P+ C+ M D ++ G L
Sbjct: 394 LVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTL 453
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N+ L ++ A
Sbjct: 454 LSACKMHKNLELGEQVA 470
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 47/150 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + ++L +C +L GR++ +R +K G+ ++ V + +Y CG
Sbjct: 143 ILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDAR 202
Query: 55 -----------------------------------------VTWNEMIHGYAENEYVEQA 73
V W MI G+ NE +A
Sbjct: 203 RVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRA 262
Query: 74 ISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ ++ + V+ + T V +L+ CS G
Sbjct: 263 LEAFRGMQGENVRPNEFTIVCVLSACSQLG 292
>gi|225216941|gb|ACN85235.1| EMB2261 putative [Oryza minuta]
Length = 612
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ TVL +CA LSS+ G++I R ++ G D+ V SA +++Y CG
Sbjct: 342 YSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYAYSVFEA 401
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+TWN MI G+ +N + EQAI+L+K ++ G + D ++F+ +L CSH+G+V
Sbjct: 402 STVRNTITWNAMIGGFTQNGHGEQAINLFKRMVREGPRPDYISFIGVLFACSHTGMVEQG 461
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
FNSM D+ + P C++ P+++D +W ++ +
Sbjct: 462 RNYFNSMCEDYSIAPGIEHYNCMVDLLSRVELLEEAEDLINKSPFRNDSSLWAAILGASA 521
Query: 145 VHSNVRLAKKAA 156
HSN +A++ A
Sbjct: 522 THSNPDVAERVA 533
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 54/115 (46%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P + + +CA L G + ++ G+G+D V S+ +++Y +
Sbjct: 136 VSPNAHALSAAVKACAVLRDHKAGACLHGSVLVRGFGDDDVVLSSLVDMYGHVAAPGDAR 195
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKD-IIASGVKHDGVTFVAILT 97
G+ + +I + N++ E+A+ ++ ++ +GV+ DG TF +++T
Sbjct: 196 KVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMT 250
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F +++++ L + GRQ ++V G ++ V S+ +++Y CG
Sbjct: 238 VRPDGCTFGSMMTALGNLKRVSQGRQAHAQVVGRGLCGNVIVESSTLDMYAKCGLMVEAR 297
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+ ++ GY +N E+ I+L++++ V D + +L C+
Sbjct: 298 KVFDRMQVRNEVSQCALLGGYCQNGEYEKVITLFREM--DKVDGDWYSLGTVLRACA 352
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +L +CA L++L GR+I +++GY D +V +A +++Y CG
Sbjct: 552 PDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSL 611
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI GY + Y +AI+ + + +G++ D V+F++IL CSHSGL+
Sbjct: 612 FDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLL 671
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+IFN M+ + +++P C+ MP K D +WG L+
Sbjct: 672 DEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLC 731
Query: 142 SCQVHSNVRLAKKAA 156
C++H +V+LA+K A
Sbjct: 732 GCRIHHDVKLAEKVA 746
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + T++L++CA +L G+ + I ++ + FV +A ++Y CG
Sbjct: 450 VVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAH 509
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN MI GY +N +A++L+ ++ K DG T IL C+
Sbjct: 510 DVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACA 565
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 29/175 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY-----CNCG- 54
+ P + F+++L A ++ + GRQ+ I K G+ + V ++ I+ Y C
Sbjct: 247 IKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQ 306
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GY +N ++ I ++ ++ GV D T V + C++ G
Sbjct: 307 KLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIG 366
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL---MPYKDDLVVWGDLVSSC-QVHSNVRLAKK 154
+ + + H + +K L + + + L+ D+ S C ++S +R+ ++
Sbjct: 367 TL-----LLGKVLHSYSIKAATLDREVRFNNTLL---DMYSKCGDLNSAIRVFER 413
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 17/106 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ ++L CA+ S+ GR++ + I G D +G + +Y CG
Sbjct: 153 YCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLS 212
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
WN MI Y+ + ++I+L+K ++ G+K + TF +IL
Sbjct: 213 ESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSIL 258
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 18/114 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG------------ 54
V +CA + +L LG+ + + +K ++ + +++Y CG
Sbjct: 355 MVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERM 414
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY + AI L+ ++ + GV D +IL C+ +G
Sbjct: 415 DEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAING 468
>gi|449458231|ref|XP_004146851.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
gi|449522932|ref|XP_004168479.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Cucumis sativus]
Length = 705
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 98/189 (51%), Gaps = 41/189 (21%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
+VLS CA L++L LGR++ +++ +++ VG+ IN+Y CG
Sbjct: 419 ASVLSICAMLAALNLGREMHGHVIRARMDDNVLVGNGLINMYTKCGSFKPGFMVFEKLEN 478
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
++WN MI GY + + A++ + +I SG + DGVTF+A L+ CSH+GLV +
Sbjct: 479 RDSISWNSMIAGYGTHGLGKDALATFNHMIKSGYRPDGVTFIAALSACSHAGLVAEGHWL 538
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F+ M + +++P+ C+ MP + + +W L++SC++H
Sbjct: 539 FSQMRQNFKIEPEIEHYACMVDLLGRAGLVEEASNIIKGMPMEPNAYIWSSLLNSCRMHK 598
Query: 148 NVRLAKKAA 156
+ LA++AA
Sbjct: 599 DTDLAEEAA 607
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 21/137 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT VLS CA L++L G+ I +VK G+ + +F +A I +Y G
Sbjct: 271 VGPTAEMLAVVLSVCADLATLNSGQMIHGYMVKGGFNDYLFAKNALITLYGKGGGVGDAE 330
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDI----IASGVKHDGVTFVAILTPC 99
V+WN +I +AE+ ++A+ L + +K + +T+ AI+
Sbjct: 331 KLFHEMKVKNLVSWNALISSFAESGVYDKALELLSQLEKMEAYPEMKPNVITWSAIICGF 390
Query: 100 SHSGLVYAEVEIFNSME 116
+ GL +E+F M+
Sbjct: 391 ASKGLGEESLEVFRKMQ 407
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F +L + + L + + + + +V+ G+ N + VG+ I +Y
Sbjct: 140 FTFPLLLRASSNLGAFNMCKNLHCHVVQFGFQNHLHVGNELIGMYAKLERMDDARKVFDK 199
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN M+ GYA N V A ++ + GV+ + VT+ ++L+ + G +
Sbjct: 200 MRIKSVVSWNTMVSGYAYNYDVNGASRMFHQMELEGVEPNPVTWTSLLSSHARCGHLEET 259
Query: 109 VEIFNSME 116
+ +F M
Sbjct: 260 MVLFCKMR 267
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 43 GSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
GSAP Y N + WN +I + Y +A+ LY + GV DG TF +L S+
Sbjct: 94 GSAPFECYSNF-LLWNSIIRANVYHGYCIEALQLYGKMRNYGVLGDGFTFPLLLRASSNL 152
Query: 103 G 103
G
Sbjct: 153 G 153
>gi|222618271|gb|EEE54403.1| hypothetical protein OsJ_01428 [Oryza sativa Japonica Group]
Length = 440
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F T++ S+CA L++L G+Q+ +++ Y +D+ +G+A +++Y CG
Sbjct: 181 PNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKNV 240
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+W MI GY N Y +A+ L+ +I +GV D V F+++++ CSH+GLV
Sbjct: 241 FDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGLV 300
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVS 141
F SM +++ ++P MP+ D VWG L+
Sbjct: 301 DEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMPFAPDEYVWGALLG 360
Query: 142 SCQVHSNVRLAKKAA 156
+ ++H+NV + + AA
Sbjct: 361 ASKMHNNVEMGRLAA 375
>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53360, mitochondrial; Flags: Precursor
gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 768
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +L C ++SSL LG Q+ +K G + F+ + I++Y CG
Sbjct: 471 PDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRI 530
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ +I GYA++ + E+A+ L+K++ ++G++ + VTFV +LT CSH GLV
Sbjct: 531 FDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLV 590
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
++++ +M+ +H + P C+ M + D+VVW L+S
Sbjct: 591 EEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLS 650
Query: 142 SCQVHSNVRLAKKAA 156
+C+ NV LA+KAA
Sbjct: 651 ACKTQGNVHLAQKAA 665
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P ++ F + L +C+ L G QI +K + G + ++Y CG
Sbjct: 267 HPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARR 326
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+WN +I G A N Y ++A+S++ + +SG D ++ ++L
Sbjct: 327 VFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLL 378
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P QF F +++ +CA S + LG+Q+ +++K + + +A I +Y
Sbjct: 166 PDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRV 225
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH-DGVTFVAILTPCS 100
++W+ +I G+++ + +A+S K++++ GV H + F + L CS
Sbjct: 226 FYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACS 281
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +++ +C+ SL GR+I I+ D + + +++Y CG
Sbjct: 70 YISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMP 129
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V++ +I GY++N +AI LY ++ + D F +I+ C+ S
Sbjct: 130 ERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASS 181
>gi|414869047|tpg|DAA47604.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 694
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV--------- 55
+F + L SC+ L+ L LGRQ+ + +V+ G+ ++ FV S+ I +Y CGV
Sbjct: 399 EFGLSAALRSCSDLAVLRLGRQVHSLVVQSGFASNDFVSSSLIFMYSKCGVLGDARKSFE 458
Query: 56 --------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
WN M+ GYA++ + L+ +++ V D VTFVA++T SH GLV
Sbjct: 459 EADKSSSVPWNSMMFGYAQHGQAQTVTDLFNEMLDLEVPLDHVTFVALITAYSHGGLVDE 518
Query: 108 EVEIFNSMEHDHEV---------------------KPKCL---MPYKDDLVVWGDLVSSC 143
EI N+ME +++ K K L MP++ D +VW L+ +C
Sbjct: 519 GSEILNTMETRYKIPMRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAIVWMTLLGAC 578
Query: 144 QVHSNVRLAKKAA 156
++H N+ LA A
Sbjct: 579 RIHGNMELASDVA 591
Score = 45.4 bits (106), Expect = 0.008, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 17/91 (18%)
Query: 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYA 65
LG Q+ + V+ G +++F SA +++Y CG V+WN +I GY
Sbjct: 109 LGAQLQSFSVRCGLADNVFPASALLDVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYT 168
Query: 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
++ +A+ L+ ++ G DG TF +L
Sbjct: 169 DSRKPAEAMELFLEMQRVGSVPDGTTFAVLL 199
Score = 37.7 bits (86), Expect = 1.5, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 18/119 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F +L++ A L RQ+ +IVK G + +A I Y C
Sbjct: 190 PDGTTFAVLLATIAGPRWYSLMRQLHGKIVKYGSALGLVALNAAITAYSQCDALADSRKI 249
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDII-ASGVKHDGVTFVAILTPCSHSG 103
++WN M+ YA + ++A+ + ++ SG++ D +F + ++ CS G
Sbjct: 250 FDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEHG 308
Score = 36.6 bits (83), Expect = 3.6, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 21/121 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLS-SLFLGRQILTRIVKDGYGNDIFVGSAPINIYC-------- 51
+ P + FT+ +S C++ GR I + ++K G V +A I +Y
Sbjct: 290 IQPDMYSFTSAISVCSEHGCDDQQGRSIHSLVIKFGLEGVTPVCNAMIAMYTRFADNCMM 349
Query: 52 ----NC--------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
NC V+WN M+ GY+ + A+ ++ + A ++ D A L C
Sbjct: 350 EDAYNCFSSLVFKDAVSWNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSC 409
Query: 100 S 100
S
Sbjct: 410 S 410
>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Brachypodium distachyon]
Length = 814
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 100/195 (51%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++ + + + L+ + LGRQ+ + +++ G+ + +F GSA +++Y CG
Sbjct: 440 PDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQT 499
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +I YA + AI +++ ++ G K D VTF+++L+ CSH+GL
Sbjct: 500 FDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLA 559
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
++ F ME+++ + P C+ MP++DD ++W ++
Sbjct: 560 EECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILH 619
Query: 142 SCQVHSNVRLAKKAA 156
SC+ H N LA+ AA
Sbjct: 620 SCRTHGNQDLARVAA 634
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------------ 53
P+ ++LS + + +G+QI ++V G ++ VG+A I++Y C
Sbjct: 342 LPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFIN 401
Query: 54 -----GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
GV+W MI G +N E+A+ L+ + +G+ D TF + + S+ ++
Sbjct: 402 KNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMI 458
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC---------- 53
T+F F+TVL+ + L LGRQ+ +V +++FV ++ ++ Y C
Sbjct: 240 TRFTFSTVLTVATGVGDLCLGRQV-HGLVARATSSNVFVNNSLLDFYSKCDCLDEMKKLF 298
Query: 54 -------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V++N MI GYA N + L++++ + + + ++L+
Sbjct: 299 HEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLS 349
>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 944
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q F TVL + A +SL LG+Q+ I++ G ++F GS +++Y CG
Sbjct: 446 QSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFE 505
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+WN +I YA+N E AI + +I SG++ D V+ + +L CSH G V
Sbjct: 506 EMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQ 565
Query: 108 EVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSC 143
E F +M + + PK C+ MP++ D ++W ++++C
Sbjct: 566 GTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNAC 625
Query: 144 QVHSNVRLAKKAA 156
+++ N LA++AA
Sbjct: 626 RIYKNQSLAERAA 638
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 17/108 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------------ 53
FPF T+LS A LSSL +GRQ+ + + + + VG++ +++Y C
Sbjct: 346 FPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKS 405
Query: 54 -----GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V+W +I GY + + L+ + + ++ D TF +L
Sbjct: 406 LSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVL 453
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/174 (18%), Positives = 73/174 (41%), Gaps = 31/174 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ F F+ VL + L LG+Q+ V G+ D VG+ ++ Y
Sbjct: 242 PSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNL 301
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V++N +I Y++ E E++++L++++ G F +L+ ++
Sbjct: 302 FNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAAN---- 357
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG----DLVSSCQVHSNVRLAKKA 155
+S++ +V + ++ D ++ G D+ + C++ L K+
Sbjct: 358 ------LSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKS 405
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 94/196 (47%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F +VLS C +L LG+QI RI + G D+ +G+A IN+Y CG
Sbjct: 530 PDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNV 589
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVK-HDGVTFVAILTPCSHSGL 104
++W MI G A+ +AI L+ + G + DG TF +IL+ C+H+GL
Sbjct: 590 FHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGL 649
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V +IF+SME ++ V P CL MP+ D VW L+
Sbjct: 650 VLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLL 709
Query: 141 SSCQVHSNVRLAKKAA 156
+C++H N+ LA+ AA
Sbjct: 710 GACRIHGNIALAEHAA 725
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 17/112 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ ++L++C+ +L G+ I + I +DG+ +D+ +G+A I++Y CG
Sbjct: 333 YLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP 392
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++WN +I GYA E +A+ LYK + + GVK VTF+ +L+ C++S
Sbjct: 393 KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS 444
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F +LS+CA S+ G+ I I++ G ++ + +A +N+Y CG
Sbjct: 427 VKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQ 486
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++WN MI G+A++ E A L++++ ++ D +TF ++L+ C +
Sbjct: 487 NVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKN 544
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + ++L++C + L G++I ++I+K GY D V ++ +++Y CG
Sbjct: 126 PNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQV 185
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V++N M+ YA+ YV++ + L+ + + G+ D VT++ +L
Sbjct: 186 FAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLL 236
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 28/152 (18%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +L +C + L ++I ++V+ G G DIF+ + IN+Y C
Sbjct: 30 YVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMP 89
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
++WN +I YA+ + ++A L++++ +G + +T+++ILT C Y+ E
Sbjct: 90 RRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTAC------YSPAE 143
Query: 111 IFNSME-HDHEVKPKCLMPYKDDLVVWGDLVS 141
+ N + H +K Y+ D V L+S
Sbjct: 144 LENGKKIHSQIIKAG----YQRDPRVQNSLLS 171
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 17/135 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + + +L + S L G++I V++G +DI VG+A + + CG
Sbjct: 225 ISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAK 284
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V +N +I A++ + +A Y + + GV + T+++IL CS S
Sbjct: 285 QAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSK 344
Query: 104 LVYAEVEIFNSMEHD 118
+ A I + + D
Sbjct: 345 ALEAGKLIHSHISED 359
>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Glycine max]
Length = 916
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q F TVL +CA LSSL GR+I + I G+ D SA +++Y CG
Sbjct: 618 ISPDQATFVTVLQACALLSSLHDGREIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSV 677
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++WN MI G+A+N Y + A+ ++ ++ S + D VTF+ +LT CSH+
Sbjct: 678 QVFEELATKKDVISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSHA 737
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
G VY +IF+ M + + ++P+ C+ + + + ++W +
Sbjct: 738 GWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPNAMIWAN 797
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C++H + + ++AA
Sbjct: 798 LLGACRIHGDEKRGQRAA 815
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P +F +T++LS+CA L +GRQ+ + I+K + +++FV +A I++Y G
Sbjct: 314 IHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAG 373
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++WN +I GY + E A SL++ +I G+ D V+ +IL+ C
Sbjct: 374 KHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFRRMILDGIVPDEVSLASILSAC 429
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V ++ +VLS+ A L++L G + +K G+ + I+V S+ IN+Y C
Sbjct: 213 VKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDAR 272
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ WN M+ Y++N ++ + L+ D+I+ G+ D T+ +IL+ C+
Sbjct: 273 QVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCA 329
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 20/132 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P QF F LS+CAKL +L LGR + + ++K G + F A I++Y C
Sbjct: 45 PDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSFCQGALIHLYAKCNSLTCARTI 104
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I GY + +A+ ++ + S V D V V +L G
Sbjct: 105 FASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAVP-DQVALVTVLNAYISLG 163
Query: 104 LVYAEVEIFNSM 115
+ ++F M
Sbjct: 164 KLDDACQLFQQM 175
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 18/128 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + ++LS+C + L G+Q VK G ++F GS+ I++Y CG
Sbjct: 415 IVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAH 474
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+ N +I GYA +++I+L ++ G+K +TF +++ C S
Sbjct: 475 KTYSSMPERSVVSVNALIAGYALKN-TKESINLLHEMQILGLKPSEITFASLIDVCKGSA 533
Query: 104 LVYAEVEI 111
V ++I
Sbjct: 534 KVILGLQI 541
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 28/175 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY--GNDIFVGSAPINIYCNCG------ 54
P++ F +++ C + + LG QI IVK G G++ F+G++ + +Y +
Sbjct: 517 PSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSE-FLGTSLLGMYMDSQRLADAN 575
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V W +I G+ +NE + A++LY+++ + + D TFV +L C+
Sbjct: 576 ILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALL 635
Query: 103 GLVYAEVEIFNSMEHD----HEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAK 153
++ EI + + H E+ L+ D GD+ SS QV + K
Sbjct: 636 SSLHDGREIHSLIFHTGFDLDELTSSALV---DMYAKCGDVKSSVQVFEELATKK 687
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P TVLS+CA+L +L LG+ + G+ I+VG+A I++Y CG
Sbjct: 314 VVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAM 373
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TWN MI G A + A++L+ + +G K DG+TF+ +L C+H G
Sbjct: 374 EVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLG 433
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV FNSM +++ + P+ C+ MP + D V+W L
Sbjct: 434 LVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAAL 493
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C+++ N+ LA+ A
Sbjct: 494 LGACRIYKNIDLAELA 509
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 33/150 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F VL SCAK+ + G +I ++K G + FV + I++Y
Sbjct: 119 VRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAY 178
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W MI GY + ++L + + + D V + +++ G
Sbjct: 179 KLFVGMLERNIVAWTSMISGYI----LCNRVALARRLFDLAPERDVVLWNIMVSGYIEIG 234
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDL 133
+ A ++F++ MPY+D +
Sbjct: 235 DMKAARKLFDT------------MPYRDTM 252
>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 839
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 99/194 (51%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F + ++LS A + ++ G QI +VK G+ D+ V +A I++Y CG
Sbjct: 466 SSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVF 525
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
+TW +I+G+A++ + +A+ L+ +++ +GVK + VT++A+L+ CSH GL+
Sbjct: 526 NDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLID 585
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+ F SM +H + P+ C+ MP+ D +VW + S
Sbjct: 586 EAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGS 645
Query: 143 CQVHSNVRLAKKAA 156
C+VH N +L + AA
Sbjct: 646 CRVHRNTKLGEHAA 659
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 20/118 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P +F T ++S CA++ L LG+++ + +++ G D+ VG + +++Y CG+
Sbjct: 260 PDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKV 319
Query: 56 ----------TWNEMIHGYAE--NEYVEQAISLYKD-IIASGVKHDGVTFVAILTPCS 100
+W +++GY Y +A+ ++ + ++ GV + TF +L C+
Sbjct: 320 FDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACA 377
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 22/122 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND-IFVGSAPINIY---CNCG-- 54
VYP ++ FT V+ +C K G + ++K GY + + VG I+++ C+
Sbjct: 152 VYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADL 211
Query: 55 ---------------VTWNEMIHGYAENEYVEQAISLYKD-IIASGVKHDGVTFVAILTP 98
VTW MI A+ Y ++AI L+ + +++SG D T +++
Sbjct: 212 ESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISV 271
Query: 99 CS 100
C+
Sbjct: 272 CA 273
>gi|125525521|gb|EAY73635.1| hypothetical protein OsI_01524 [Oryza sativa Indica Group]
Length = 560
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F T++ S+CA L++L G+Q+ +++ Y +D+ +G+A +++Y CG
Sbjct: 267 PNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKNV 326
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+W MI GY N Y +A+ L+ +I +GV D V F+++++ CSH+GLV
Sbjct: 327 FDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGLV 386
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVS 141
F SM +++ ++P MP+ D VWG L+
Sbjct: 387 DEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMPFAPDEYVWGALLG 446
Query: 142 SCQVHSNVRLAKKAA 156
+ ++H+NV + + AA
Sbjct: 447 ASKMHNNVEMGRLAA 461
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V W M+ GYA N +A+ +++ ++A+G + T ++LT C
Sbjct: 35 VAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVLTAC 79
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 17/80 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F + L +C + L LG+Q+ + +K ++ V ++ I++YC C
Sbjct: 171 STFACSIALHACTLVIDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLF 230
Query: 55 --------VTWNEMIHGYAE 66
+TWN MI GY++
Sbjct: 231 DGTPERNLITWNTMIAGYSQ 250
>gi|57899090|dbj|BAD86909.1| putative PPR986-12 [Oryza sativa Japonica Group]
Length = 560
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F T++ S+CA L++L G+Q+ +++ Y +D+ +G+A +++Y CG
Sbjct: 267 PNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKNV 326
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+W MI GY N Y +A+ L+ +I +GV D V F+++++ CSH+GLV
Sbjct: 327 FDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGLV 386
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVS 141
F SM +++ ++P MP+ D VWG L+
Sbjct: 387 DEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMPFAPDEYVWGALLG 446
Query: 142 SCQVHSNVRLAKKAA 156
+ ++H+NV + + AA
Sbjct: 447 ASKMHNNVEMGRLAA 461
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V W M+ GYA N +A+ +++ ++A+G + T ++LT C
Sbjct: 35 VAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVLTAC 79
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 17/80 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F + L +C + L LG+Q+ + +K ++ V ++ I++YC C
Sbjct: 171 STFACSIALHACTLVIDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLF 230
Query: 55 --------VTWNEMIHGYAE 66
+TWN MI GY++
Sbjct: 231 DGTPERNLITWNTMIAGYSQ 250
>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Cucumis sativus]
Length = 706
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 96/193 (49%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
F F+ ++ C++L+S+ +Q+ +V++G+G D+ +A ++ Y G
Sbjct: 334 HFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFD 393
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
++WN +I GY + + E+AI +++ ++ G+ + VTF+A+L+ CS SGL
Sbjct: 394 RMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFER 453
Query: 108 EVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDLVSSC 143
EIF SM DH+VKP+ + P++ +W L+ +C
Sbjct: 454 GWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKAPFQPTANMWAALLRAC 513
Query: 144 QVHSNVRLAKKAA 156
+VH N+ L K AA
Sbjct: 514 RVHGNLELGKFAA 526
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 63/125 (50%), Gaps = 17/125 (13%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F T++ + A L +F GRQ+ + +K G G DIFV A I++Y CG
Sbjct: 236 FATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMP 295
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V WN +I GYA + Y E+A+ LY ++ SGVK D TF I+ CS V +
Sbjct: 296 DKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQ 355
Query: 111 IFNSM 115
+ S+
Sbjct: 356 VHASL 360
>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 91/191 (47%), Gaps = 42/191 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P QF F++ L +CA ++SL G+QI +++ + + V SA I++Y CG
Sbjct: 320 VRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGR 379
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V WN +I A++ E+AI + D++ SG K D +TFV IL CSHS
Sbjct: 380 KVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHS 439
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV + F SM D+ + P CL MPYK D VW
Sbjct: 440 GLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNA 499
Query: 139 LVSSCQVHSNV 149
L+ C++H ++
Sbjct: 500 LLGVCRIHGHI 510
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 22/135 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F VL+ C KL + L RQ+ +I+ G+ +++ + S+ ++ Y CG
Sbjct: 193 FSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDE 252
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+ W M+ GYA+ ++ A L+ ++ + + V++ A+++ + +G+ +
Sbjct: 253 MSARDVLAWTTMVSGYAKWGDMKSANELFVEM----PEKNPVSWTALISGYARNGMGHKA 308
Query: 109 VEIFNSMEHDHEVKP 123
+E+F M H V+P
Sbjct: 309 LELFTKMMLFH-VRP 322
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + VL +CA + +L LGR+I + GY +I V + I++Y CG
Sbjct: 241 LLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDAC 300
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W+ MI G A + E A++L+ +I +GVK + VTF+ IL CSH G
Sbjct: 301 RIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMG 360
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V + F SM D+ + P+ C+ MP + VVWG L
Sbjct: 361 MVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGAL 420
Query: 140 VSSCQVHSNVRLAKKA 155
+ C+VH N++LA++A
Sbjct: 421 LGGCKVHKNIKLAEEA 436
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 49/198 (24%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + + VL +C++L + G+ + + K G +++F+ + +++Y CG
Sbjct: 109 ISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVAR 168
Query: 55 -----------VTWN-------------------------------EMIHGYAENEYVEQ 72
+TWN MI GYA+ ++
Sbjct: 169 KVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKE 228
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN-SMEHDHEVKPKCLMPYKD 131
AI L+ ++ +G+ + VT VA+L C+ G + I + S +E + D
Sbjct: 229 AIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLID 288
Query: 132 DLVVWGDLVSSCQVHSNV 149
V G L +C++ N+
Sbjct: 289 MYVKCGCLEDACRIFDNM 306
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---- 56
V P F ++L++CA L + GR I IV++ + + V +A I++YC CG
Sbjct: 254 VKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGL 313
Query: 57 -------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN MI G A N + E+A+ L+ ++ SG++ D V+F+ +LT C+HSG
Sbjct: 314 NVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSG 373
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDL 139
V+ E F M+ + ++P MP ++D V+W L
Sbjct: 374 EVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSL 433
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+ NV +AK+AA
Sbjct: 434 LSACRKIGNVEMAKRAA 450
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 70/140 (50%), Gaps = 22/140 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + + +V + +L GRQ+ ++K+G +D F+ + +++Y CG
Sbjct: 122 VKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAW 181
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI G+A+ ++QA +L+ ++ + +GV++ ++++ +G
Sbjct: 182 RIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEM----PQRNGVSWNSMISGFVRNG 237
Query: 104 LVYAEVEIFNSMEHDHEVKP 123
+++F M+ + +VKP
Sbjct: 238 RFKDALDMFREMQ-EKDVKP 256
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F VLS+C++L +L +GR + + + K ++FVG+A IN+Y CG
Sbjct: 238 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 297
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+T+N MI G + N QAI L++ ++ ++ VTFV +L CSH G
Sbjct: 298 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGG 357
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV EIF+SM D+ V+P+ C+ M D ++ G L
Sbjct: 358 LVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTL 417
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N+ L ++ A
Sbjct: 418 LSACKMHKNLELGEQVA 434
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + ++L +C +L GR++ +R +K G+ ++ V + +Y CG
Sbjct: 133 ILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDAR 192
Query: 55 ---------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V W MI G+ NE +A+ ++ + V+ + T V +L+ C
Sbjct: 193 RVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSAC 252
Query: 100 SHSG 103
S G
Sbjct: 253 SQLG 256
>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g30700-like [Cucumis sativus]
Length = 788
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T++LS+CA+L +L +G+ + I + ++++V +A +++Y CG
Sbjct: 413 PNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL 472
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN MI GY + + ++A+ L+ +++ SG+ GVTF++IL CSHSGLV
Sbjct: 473 FDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLV 532
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
EIF+SM +++ +P C+ MP + VWG L+
Sbjct: 533 SEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLG 592
Query: 142 SCQVHSNVRLAKKAA 156
+C +H N +A A+
Sbjct: 593 ACMIHKNTEMANVAS 607
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F + +S+ ++L +G + + DG +++FVGSA +++Y
Sbjct: 111 PDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKV 170
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN MI G++ N Y E +I ++ D++ G+ D T +LT +
Sbjct: 171 FDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 17/106 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
TVL++ A+L LG I K G +D++V + I++Y CG
Sbjct: 217 LATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQID 276
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+++N MI GY N E A++L+++++ASG + + T V ++
Sbjct: 277 QPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLI 322
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI GY +N ++AISL+++++ + + VT +IL+ C+ G
Sbjct: 383 SWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLG 429
>gi|357122034|ref|XP_003562721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Brachypodium distachyon]
Length = 689
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 96/193 (49%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
++ F+ L SC++L+ L LGRQI I+ G+ ++ FV S+ I +Y G
Sbjct: 397 EYAFSAALRSCSELAVLQLGRQIHGSIIHSGFASNNFVSSSLIFMYSKSGILDDAKKSFE 456
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V WN MI GYA++ + SL+ +++ V D VTFV ++T CSH+GLV
Sbjct: 457 EADKGSSVPWNSMIFGYAQHGHAHIVHSLFNEMVELKVPLDHVTFVGLITSCSHAGLVDE 516
Query: 108 EVEIFNSMEHDHEV---------------------KPKCL---MPYKDDLVVWGDLVSSC 143
EI N+ME + + K K L MP++ D +VW L+ +C
Sbjct: 517 GSEILNAMETRYGIPLRMEHYACGVDLYGRAGQLEKAKELIDSMPFEPDAMVWMTLLGAC 576
Query: 144 QVHSNVRLAKKAA 156
++H N+ LA + A
Sbjct: 577 RIHGNMELASEVA 589
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V F + L S A LG Q+ + K G +++F SA +++Y CG
Sbjct: 87 VAANTFALGSSLRSAAAARCPALGAQLQSLAFKSGLADNVFAASALLHMYAKCGRVRDAR 146
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN +I GY E+ V QA+ L+ ++ + D TF A+LT
Sbjct: 147 RVFDGMPERNTVSWNALIAGYVESGKVLQALELFINMETERLVPDEATFAALLT 200
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 21/132 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY------------CNC 53
+ FT+++S+C + GR I ++K+G V +A I +Y C C
Sbjct: 295 YSFTSIISTCPEHDD-HQGRAIHGLVIKNGLEGATPVCNALIAMYTRISGNCMMEDACKC 353
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN M+ GY+++ A+ ++ + ++ ++ D F A L CS ++
Sbjct: 354 FDSLLIKDTVSWNSMLTGYSQHNLSADALRFFRCMQSANIRCDEYAFSAALRSCSELAVL 413
Query: 106 YAEVEIFNSMEH 117
+I S+ H
Sbjct: 414 QLGRQIHGSIIH 425
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 24/137 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F +L++ S+ FL Q+ +IVK G + V +A I Y CG
Sbjct: 190 PDEATFAALLTAFDD-SNYFLMHQLHGKIVKYGSALGLTVSNAAITAYSQCGALAESRRI 248
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDII-ASGVKHDGVTFVAILTPC---- 99
++WN M+ Y + A+ + +I SGV+ D +F +I++ C
Sbjct: 249 FDQIGDSRDLISWNAMLGAYTYHGMDYDAMGFFVRMIRESGVQLDMYSFTSIISTCPEHD 308
Query: 100 SHSGLVYAEVEIFNSME 116
H G + I N +E
Sbjct: 309 DHQGRAIHGLVIKNGLE 325
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +VL +CA +L G+QI ++ G+ +++ VG+ ++IY CG
Sbjct: 419 IKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQ 478
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI Y + + E A++L+ + +G K D + F AILT CSH+G
Sbjct: 479 KLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAG 538
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV ++ F M+ D+ + PK CL M + D VWG L
Sbjct: 539 LVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGAL 598
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N+ L ++AA
Sbjct: 599 LGACRIHCNIELGEQAA 615
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +VL +CA L +L G+QI ++ G+ ++ VG+A +N+Y CG
Sbjct: 318 IKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAY 377
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN +I GY+++ + +A++L+ ++ A G+K D V++L C+H
Sbjct: 378 KLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAH 435
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 63/118 (53%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F +V+ +C S L GR++ I+ G+ +D+ VG+A ++Y CG
Sbjct: 116 INPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENAR 175
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I GY++N +A++L+ ++ +G+K + T V+++ C+H
Sbjct: 176 QVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAH 233
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +V+ CA L +L G+QI ++ G +D+ V + +N+Y CG
Sbjct: 217 IKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAH 276
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+WN +I GY+ N +A++ + + G+K + +T V++L C+H
Sbjct: 277 KLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAH 334
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 52 NCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
N V W E I GY +N + +A+ LY + +G+ D + F++++ C
Sbjct: 83 NNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKAC 130
>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Cucumis sativus]
Length = 788
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 99/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T++LS+CA+L +L +G+ + I + ++++V +A +++Y CG
Sbjct: 413 PNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQL 472
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN MI GY + + ++A+ L+ +++ SG+ GVTF++IL CSHSGLV
Sbjct: 473 FDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLV 532
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
EIF+SM +++ +P C+ MP + VWG L+
Sbjct: 533 SEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLG 592
Query: 142 SCQVHSNVRLAKKAA 156
+C +H N +A A+
Sbjct: 593 ACMIHKNTEMANVAS 607
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F + +S+ ++L +G + + DG +++FVGSA +++Y
Sbjct: 111 PDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKV 170
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN MI G++ N Y E +I ++ D++ G+ D T +LT +
Sbjct: 171 FDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 17/106 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
TVL++ A+L LG I K G +D++V + I++Y CG
Sbjct: 217 LATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQID 276
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+++N MI GY N E A++L+++++ASG + + T V ++
Sbjct: 277 QPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLI 322
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI GY +N ++AISL+++++ + + VT +IL+ C+ G
Sbjct: 383 SWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLG 429
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + VLS+CA+L S LG QI + I ++GSA I++Y CG
Sbjct: 308 PNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDV 367
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ WN MI G A N + E AI+LY +++ GV+ + +TF+A+LT C+H+GLV
Sbjct: 368 FHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLV 427
Query: 106 YAEVEIFNSMEHDHE-VKPK------------------------CLMPYKDDLVVWGDLV 140
+ F M+ + + P+ C M + + V+W L+
Sbjct: 428 DKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLL 487
Query: 141 SSCQVHSNVRLAKKAA 156
S+C+ H++V LAK AA
Sbjct: 488 SACRAHADVELAKLAA 503
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TTV S CAK L GR+ + ++ N + V +A + +Y C
Sbjct: 208 PNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQN-VIVHTALMEMYVKCRAIDEARRE 266
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ MI GY+ N +++ L++ + A+ K + VT V +L+ C+ G
Sbjct: 267 FDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLG 324
>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g56570
gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 611
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 99/196 (50%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + FT+++++CA +++L G+Q+ RI + G+ ++ + +A I++Y CG
Sbjct: 311 PNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRV 370
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+W M+ GY + Y +A+ L+ +++SG++ D + F+A+L+ C H+GL
Sbjct: 371 FGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGL 430
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLV 140
V ++ FN ME ++ + P C+ MP+K D WG ++
Sbjct: 431 VEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAIL 490
Query: 141 SSCQVHSNVRLAKKAA 156
+C+ H + L + A
Sbjct: 491 GACKAHKHNGLISRLA 506
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 18/148 (12%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P +F ++VL SC + L G + +VK G ++V +A +N+Y C VT
Sbjct: 109 PNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVT------ 162
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM-EHDHEV 121
+E A +++DI VK+D VT+ ++T +H G ++++ M + EV
Sbjct: 163 -------MEAACLIFRDI---KVKND-VTWTTLITGFTHLGDGIGGLKMYKQMLLENAEV 211
Query: 122 KPKCLMPYKDDLVVWGDLVSSCQVHSNV 149
P C+ + + Q+H++V
Sbjct: 212 TPYCITIAVRASASIDSVTTGKQIHASV 239
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
T + T + + A + S+ G+QI ++K G+ +++ V ++ +++YC CG
Sbjct: 212 TPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYF 271
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+TWN +I ++ E A+ +++ + G + TF +++ C++
Sbjct: 272 HEMEDKDLITWNTLISELERSDSSE-ALLMFQRFESQGFVPNCYTFTSLVAACAN 325
>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
[Brachypodium distachyon]
Length = 1430
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 98/203 (48%), Gaps = 47/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG------NDIFVGSAPINIYCNCG 54
V+PT + + VL++C ++ L LG+Q ++K+G+ +D+FVG++ +++Y G
Sbjct: 1122 VWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTG 1181
Query: 55 -----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI G+A+N + A+ L++ ++ S D VT + +L+
Sbjct: 1182 SIDDGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLS 1241
Query: 98 PCSHSGLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDL 133
C HSGLV F SM DH + P C+ M + D
Sbjct: 1242 ACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDA 1301
Query: 134 VVWGDLVSSCQVHSNVRLAKKAA 156
V+W L+ SC++H NV + + AA
Sbjct: 1302 VLWASLLGSCRLHKNVEMGEWAA 1324
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 81/197 (41%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P Q F++ L++CA + L G QI +++ GY D + S I++YC C
Sbjct: 482 VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSI 541
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN MI G A + E + L+ ++ G+K D VTF+ L C G
Sbjct: 542 RIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEG 601
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
V F M D + P+ C+ MP++ +W +
Sbjct: 602 HVRLGRSYFTLM-MDESIIPRIEHYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRI 660
Query: 140 VSSCQVHSNVRLAKKAA 156
C+ + N +L ++AA
Sbjct: 661 FDCCREYGNRKLGERAA 677
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F + LS+CA G Q+ + K + D+++GSA +++Y C
Sbjct: 893 YSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEA 952
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I Y +N V +A+ L+ ++ +G D VT ++++ C+
Sbjct: 953 MPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACA 1004
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCG------- 54
P + +V+S+CA L++ GRQ+ R+VK D + D+ + +A +++Y CG
Sbjct: 991 PDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARC 1050
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGV 85
V+ +I GYA + VE A ++ ++ V
Sbjct: 1051 VFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNV 1091
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
+ P +VLS CA+ L RQ+ I K + +++ +G+A +++Y NC
Sbjct: 147 IRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADAR 206
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++WN ++ Y + A+ ++ ++++GV+ G T + C
Sbjct: 207 RAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLAC 262
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + VLS+CA+L S LG QI + I ++GSA I++Y CG
Sbjct: 308 PNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDV 367
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ WN MI G A N + E AI+LY +++ GV+ + +TF+A+LT C+H+GLV
Sbjct: 368 FHRMEQKVVIAWNSMIRGLALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLV 427
Query: 106 YAEVEIFNSMEHDHE-VKPK------------------------CLMPYKDDLVVWGDLV 140
+ F M+ + + P+ C M + + V+W L+
Sbjct: 428 DKGMAFFQEMKKNKQHASPQVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLL 487
Query: 141 SSCQVHSNVRLAKKAA 156
S+C+ H++V LAK AA
Sbjct: 488 SACRAHADVELAKLAA 503
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TTV S CAK L GR+ + ++ N + V +A + +Y C
Sbjct: 208 PNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQN-VIVHTALMEMYVKCRAIDEARRE 266
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ MI GY+ N +++ L++ + A+ K + VT V +L+ C+ G
Sbjct: 267 FDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLG 324
>gi|15220808|ref|NP_173207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75175206|sp|Q9LNP2.1|PPR47_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g17630
gi|8778465|gb|AAF79473.1|AC022492_17 F1L3.33 [Arabidopsis thaliana]
gi|332191495|gb|AEE29616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 731
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 41/187 (21%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+LS CA+L +L LGR+I +++ +I V +A +N+Y CG
Sbjct: 440 ILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKD 499
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113
++WN +I GY + + E+A+S++ +I+SG DG+ VA+L+ CSH+GLV EIF
Sbjct: 500 LISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFY 559
Query: 114 SMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSNV 149
SM ++P+ C+ MP + + V G L++SC++H NV
Sbjct: 560 SMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNV 619
Query: 150 RLAKKAA 156
+A+ A
Sbjct: 620 DIAEGIA 626
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 95/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F +V+SSCA L+SL G Q R + G + I V +A I +Y CG
Sbjct: 367 VEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSH 426
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W ++ GYA+ + I L++ ++A G+K DGVTF+ +L+ CS +G
Sbjct: 427 RLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAG 486
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV ++ F SM +H + P C+ MP D+V W L
Sbjct: 487 LVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATL 546
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC+VH ++ + K AA
Sbjct: 547 LSSCRVHGDMEIGKWAA 563
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 64/114 (56%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QF F +VL++C L +L G+QI +++ + +++FVGSA +++Y C
Sbjct: 270 QFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFK 329
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W M+ GY +N + E+A+ ++ ++ +GV+ D T ++++ C++
Sbjct: 330 RMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCAN 383
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 32/158 (20%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTW------ 57
+ F+T+L C+K + LGRQI +I+K G+G+D+FVGS +++Y G+ +
Sbjct: 137 NRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYF 196
Query: 58 -----------NEMIHGYAENEYVEQAISLYKDIIASGVK-HDGVTFVAILTPCSHSGLV 105
N MI G +E++ L+ G+K D +++ ++T +GL
Sbjct: 197 DEMPERNVVMCNTMITGLMRCGMIEESQRLF-----CGLKERDSISWTIMITGLMQNGLE 251
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143
+++F M L + D +G ++++C
Sbjct: 252 REALDMFREMR---------LAGFAMDQFTFGSVLTAC 280
>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
Length = 605
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T++LS+CA++ +L LG + + I + + ++++V +A I++Y CG
Sbjct: 229 VNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVAR 288
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI GY + + ++A+ L+ D+++S VK G+TF+++L CSH+G
Sbjct: 289 ELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAG 348
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV IF++M HD +P C+ MP + VWG L
Sbjct: 349 LVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGAL 408
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C +H + LA A+
Sbjct: 409 LGACMIHKDTNLAHVAS 425
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 23/123 (18%)
Query: 5 QFPFTTV---LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+F TTV L + A+L L LG QIL +K G+ + + + + I+++ CG
Sbjct: 28 RFDLTTVIAVLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLISLFSKCGEVEIARL 87
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL---TPCSH 101
++ N MI G+ N E ++ L+K++++SG + T V ++ +P H
Sbjct: 88 LFGEIRKKDLISCNAMISGFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGH 147
Query: 102 SGL 104
S L
Sbjct: 148 SYL 150
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI G +N + AISL++ + + V + VT +IL+ C+ G
Sbjct: 200 SWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIG 247
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P TVLS+CA+L +L LG+ + G+ I+VG+A I++Y CG
Sbjct: 356 VVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAM 415
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TWN MI G A + A++L+ + +G K DG+TF+ +L C+H G
Sbjct: 416 EVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLG 475
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV FNSM +++ + P+ C+ MP + D V+W L
Sbjct: 476 LVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAAL 535
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C+++ N+ LA+ A
Sbjct: 536 LGACRIYKNIDLAELA 551
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 33/150 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F VL SCAK+ + G +I ++K G + FV + I++Y
Sbjct: 161 VRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAY 220
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W MI GY + ++L + + + D V + +++ G
Sbjct: 221 KLFVGMLERNIVAWTSMISGYI----LCNRVALARRLFDLAPERDVVLWNIMVSGYIEIG 276
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDL 133
+ A ++F++ MPY+D +
Sbjct: 277 DMKAARKLFDT------------MPYRDTM 294
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + VL +CA LS+ GR+I I+++GY +D V ++ +++Y CG
Sbjct: 497 PDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLL 556
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI GY + + ++AI+L+ + +G++ D ++FV++L CSHSGLV
Sbjct: 557 FDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLV 616
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
FN M H+ +++P C+ MP D +WG L+
Sbjct: 617 DEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLC 676
Query: 142 SCQVHSNVRLAKKAA 156
C++H +V+LA++ A
Sbjct: 677 GCRIHHDVKLAERVA 691
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + T VL+ CA+ L G+++ I ++ G DIFV +A +++Y CG
Sbjct: 393 ISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAE 452
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYK-DIIASGVKHDGVTFVAILTPCS 100
++WN +I GY++N Y +A+SL+ ++ D T +L C+
Sbjct: 453 LVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACA 510
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F+ V S + L S+ G Q+ I+K G+G VG++ + Y
Sbjct: 196 YTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDE 255
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +I+GY N E+ +S++ ++ SG++ D T V++ C+ S L+
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLI 312
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 17/100 (17%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+VL CA SL G+++ I +G+ D +GS +Y NCG
Sbjct: 99 SVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIE 158
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF 92
+ WN +++ A++ +I L+K +++SGV+ D TF
Sbjct: 159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+V + CA + LGR + VK + + + +++Y CG
Sbjct: 301 SVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGR 360
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V++ MI GYA +A+ L++++ G+ D T A+L C+ + L+
Sbjct: 361 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLL 413
>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F +++L++CA LS+ G+Q+ I+K G+ DIF G++ +N+Y CG
Sbjct: 532 PDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRA 591
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ MI G A++ + QA+ L+ ++ GV + +T V++L C+H+GLV
Sbjct: 592 FSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLV 651
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
F SME KP C+ MP++ + VWG L+
Sbjct: 652 TEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLG 711
Query: 142 SCQVHSNVRLAKKAA 156
+ ++H +V L ++AA
Sbjct: 712 AARIHKDVELGRRAA 726
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+F F++VL +C+ + L +G+Q+ +V G+ D+FV + + +Y C
Sbjct: 156 NEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLF 215
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN + Y + ++ +A+ L+ +++ SG+K + + +++ C+
Sbjct: 216 DEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT 269
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT ++ +LS C SL G QI I K G +D + + IN+Y C
Sbjct: 54 PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKL 113
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W+ +I GYA+N A+ + ++ GVK + TF ++L CS
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 38/166 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F ++++++C L G+ I ++K GY D F +A +++Y G
Sbjct: 254 IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAI 313
Query: 55 -----------VTWNEMIHGYAENEYVEQAI--------SLYKDIIASGVKHDGVTFVAI 95
V+WN +I G +E+ EQA+ L+ ++ ++ D V +
Sbjct: 314 SVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGL 373
Query: 96 LTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
+ S L+ FN L+P K DL+ W ++S
Sbjct: 374 VDMYSKCDLLEDARMAFN------------LLPEK-DLIAWNAIIS 406
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
Q +T+L S A L + + RQ+ VK G+ +DI+V ++ I+ Y C
Sbjct: 432 NQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIF 491
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V++ MI YA+ E+A+ L+ ++ +K D ++L C++
Sbjct: 492 EECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACAN 546
>gi|225443851|ref|XP_002267303.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial [Vitis vinifera]
Length = 533
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F +V+ +C+ L+ +G+Q+ +++VK + NDI +GSA I++Y CG
Sbjct: 280 PTMSTFASVIGACSVLTVFEIGQQVQSQLVKMNFYNDIKMGSALIDMYSKCGRIEDARRV 339
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDI-IASGVKHDGVTFVAILTPCSHSGL 104
+W MI GY +N +A+ L+ + I VK + VTF++ L+ C H+GL
Sbjct: 340 FDHMPEKNVFSWTSMIDGYGKNGNSNEALELFSRMQIECHVKPNYVTFLSALSACGHAGL 399
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V I SME D+ +KP+ C+ MP K VW L+
Sbjct: 400 VAKGWTILESMERDYLLKPRMEHYACMVDLLGRAGSLQQAWEFVMRMPEKPGSDVWAALL 459
Query: 141 SSCQVHSNVRLAKKAA 156
SSCQ+H +V +A AA
Sbjct: 460 SSCQLHGDVEMASMAA 475
>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F +++L++CA LS+ G+Q+ I+K G+ DIF G++ +N+Y CG
Sbjct: 559 PDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRA 618
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ MI G A++ + QA+ L+ ++ GV + +T V++L C+H+GLV
Sbjct: 619 FSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLV 678
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
F SME KP C+ MP++ + VWG L+
Sbjct: 679 TEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLG 738
Query: 142 SCQVHSNVRLAKKAA 156
+ ++H +V L ++AA
Sbjct: 739 AARIHKDVELGRRAA 753
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+F F++VL +C+ + L +G+Q+ +V G+ D+FV + + +Y C
Sbjct: 156 NEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLF 215
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN + Y + ++ +A+ L+ +++ SG+K + + +++ C+
Sbjct: 216 DEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT 269
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT ++ +LS C SL G QI I K G +D + + IN+Y C
Sbjct: 54 PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W+ +I GYA+N A+ + ++ GVK + TF ++L CS
Sbjct: 114 VDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 29/172 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F ++++++C L G+ I ++K GY D F +A +++Y G
Sbjct: 254 IKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAI 313
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G +E+ EQA+ L + SG+ + T + L C+ G
Sbjct: 314 SVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMG 373
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVV---WGDLVSSCQVHSNVRLA 152
L ++ +S+ M + DL V D+ S C + + R+A
Sbjct: 374 LKELGRQLHSSLMK---------MDMESDLFVSVGLVDMYSKCDLLEDARMA 416
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F ++ L +CA + LGRQ+ + ++K +D+FV +++Y C
Sbjct: 357 PNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMA 416
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+ WN +I GY++ +A+SL+ ++ G+ + T IL
Sbjct: 417 FNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTIL 467
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
Q +T+L S A L + + RQ+ VK G+ +DI+V ++ I+ Y C
Sbjct: 459 NQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIF 518
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V++ MI YA+ E+A+ L+ ++ +K D ++L C++
Sbjct: 519 EECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACAN 573
>gi|297740478|emb|CBI30660.3| unnamed protein product [Vitis vinifera]
Length = 598
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 97/196 (49%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F +V+ +C+ L+ +G+Q+ +++VK + NDI +GSA I++Y CG
Sbjct: 280 PTMSTFASVIGACSVLTVFEIGQQVQSQLVKMNFYNDIKMGSALIDMYSKCGRIEDARRV 339
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDI-IASGVKHDGVTFVAILTPCSHSGL 104
+W MI GY +N +A+ L+ + I VK + VTF++ L+ C H+GL
Sbjct: 340 FDHMPEKNVFSWTSMIDGYGKNGNSNEALELFSRMQIECHVKPNYVTFLSALSACGHAGL 399
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V I SME D+ +KP+ C+ MP K VW L+
Sbjct: 400 VAKGWTILESMERDYLLKPRMEHYACMVDLLGRAGSLQQAWEFVMRMPEKPGSDVWAALL 459
Query: 141 SSCQVHSNVRLAKKAA 156
SSCQ+H +V +A AA
Sbjct: 460 SSCQLHGDVEMASMAA 475
>gi|56201767|dbj|BAD73217.1| hypothetical protein [Oryza sativa Japonica Group]
gi|56201874|dbj|BAD73324.1| hypothetical protein [Oryza sativa Japonica Group]
gi|125569384|gb|EAZ10899.1| hypothetical protein OsJ_00742 [Oryza sativa Japonica Group]
Length = 569
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 41/192 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TVLS+C L +L LGR++ +K V + IN+Y CG
Sbjct: 284 PNVVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKV 343
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN M+ GY + ++A++L+ D+ + V+ DGVTFVA+L+ C H+G V
Sbjct: 344 FDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRV 403
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+F+ M H++ P C+ MP + DL VWG L++
Sbjct: 404 TEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLN 463
Query: 142 SCQVHSNVRLAK 153
SC++H + +A+
Sbjct: 464 SCRIHGDAAMAE 475
>gi|297596280|ref|NP_001042300.2| Os01g0197500 [Oryza sativa Japonica Group]
gi|255672971|dbj|BAF04214.2| Os01g0197500 [Oryza sativa Japonica Group]
Length = 906
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 41/192 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TVLS+C L +L LGR++ +K V + IN+Y CG
Sbjct: 621 PNVVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKV 680
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN M+ GY + ++A++L+ D+ + V+ DGVTFVA+L+ C H+G V
Sbjct: 681 FDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRV 740
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+F+ M H++ P C+ MP + DL VWG L++
Sbjct: 741 TEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLN 800
Query: 142 SCQVHSNVRLAK 153
SC++H + +A+
Sbjct: 801 SCRIHGDAAMAE 812
>gi|125524780|gb|EAY72894.1| hypothetical protein OsI_00769 [Oryza sativa Indica Group]
Length = 569
Score = 99.8 bits (247), Expect = 3e-19, Method: Composition-based stats.
Identities = 56/192 (29%), Positives = 91/192 (47%), Gaps = 41/192 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TVLS+C L +L LGR++ +K V + IN+Y CG
Sbjct: 284 PNVVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKV 343
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN M+ GY + ++A++L+ D+ + V+ DGVTFVA+L+ C H+G V
Sbjct: 344 FDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRV 403
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+F+ M H++ P C+ MP + DL VWG L++
Sbjct: 404 TEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLN 463
Query: 142 SCQVHSNVRLAK 153
SC++H + +A+
Sbjct: 464 SCRIHGDAAMAE 475
>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
Length = 611
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q F TV+ CA+LS+L GR I R+ + ++ V +A +++Y CG
Sbjct: 237 PKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDV 296
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +I YA + + +QA+ LY+++ GVK VTFV +L+ CSH GLV
Sbjct: 297 FHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLV 356
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
++ F M+ DH +KP C+ MP + + V W L+
Sbjct: 357 ADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLG 416
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H +++ +AA
Sbjct: 417 ACKTHGDLKRGVRAA 431
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 33/125 (26%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG--YGNDIFVGSAPINIYCNCG------ 54
P +F F+ + +C+ L L GR+I + ++G D+ VG+A +N+Y CG
Sbjct: 132 PDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEAR 191
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV-------TFVAI 95
V WN MI YA++ +QA+ LY+ + HD TFV +
Sbjct: 192 KVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSM------HDTTDLAPKQGTFVTV 245
Query: 96 LTPCS 100
+ C+
Sbjct: 246 IDVCA 250
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 94/186 (50%), Gaps = 41/186 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+V+SSCA L +L LG + +VK+G ++ +G+A +++Y CG
Sbjct: 256 SVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPER 315
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIF 112
++W +I G A + Y E+++ + ++ +G+ +TF A+L+ CSH GLV +IF
Sbjct: 316 DTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIF 375
Query: 113 NSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSN 148
SM+ DH V+P+ C+ MP K + VWG L+ +C++H N
Sbjct: 376 ESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKN 435
Query: 149 VRLAKK 154
+ ++
Sbjct: 436 AEIGER 441
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 53/170 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F ++ SC KL + +G Q I+K G+ D++V ++ +++Y G
Sbjct: 115 LLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAAT 174
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
VTW+ MI GYA+N + ++
Sbjct: 175 LIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDK 234
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
A+ L+K + + GV+ + V++++ C+H G + HD+ VK
Sbjct: 235 AVELFKVLQSQGVRANETVMVSVISSCAHLGALE-----LGERAHDYVVK 279
>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
Length = 670
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q F TV+ CA+LS+L GR I R+ + ++ V +A +++Y CG
Sbjct: 296 PKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDV 355
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +I YA + + +QA+ LY+++ GVK VTFV +L+ CSH GLV
Sbjct: 356 FHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLV 415
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
++ F M+ DH +KP C+ MP + + V W L+
Sbjct: 416 ADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLG 475
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H +++ +AA
Sbjct: 476 ACKTHGDLKRGVRAA 490
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 23/141 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFL--GRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
P + F+ +L++ A++ + + GR+I G ++ VG+A I++Y CG
Sbjct: 161 PDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDAR 220
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN M+ Y + +A+ L++++ + D V + A++ + G
Sbjct: 221 AAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDA----DSVCWNAMIAAYAQHG 276
Query: 104 LVYAEVEIFNSMEHDHEVKPK 124
++++ SM ++ PK
Sbjct: 277 RGKQALDLYRSMHDTTDLAPK 297
>gi|356574078|ref|XP_003555179.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g56570-like [Glycine max]
Length = 598
Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F FT+ + +CA L+ L+ G+Q+ IV+ G N + + +A I +Y CG
Sbjct: 312 PDCFSFTSAVGACANLAVLYCGQQLHGVIVRSGLDNYLEISNALIYMYAKCGNIADSRKI 371
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI+GY ++ Y + A+ L+ ++I SG+K D + F+A+L+ CSH+GLV
Sbjct: 372 FSKMPCTNLVSWTSMINGYGDHGYGKDAVELFNEMIRSGIKPDKMVFMAVLSACSHAGLV 431
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F M + + P C+ MP+ D +W L+
Sbjct: 432 DEGLRYFRLMTSYYNITPDIEIYGCVVDLFGRAGRVKEAYQLIENMPFNPDESIWAALLG 491
Query: 142 SCQVHSNVRLAKKAA 156
+C+VH+ +AK AA
Sbjct: 492 ACKVHNQPSVAKFAA 506
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 18/118 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------------ 53
F F+ +CA + S LG+Q+ +VK G+ +++ V ++ +++YC C
Sbjct: 215 FSFSIAARACASIGSGILGKQVHAEVVKHGFESNLPVMNSILDMYCKCHCESEAKRLFSV 274
Query: 54 -----GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
+TWN +I G+ E +++ ++ +++ G+ D +F + + C++ ++Y
Sbjct: 275 MTHKDTITWNTLIAGF-EALDSRESLCIFSRMVSEGLXPDCFSFTSAVGACANLAVLY 331
>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
Length = 810
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F++++ + + L+ + LGRQ+ + +++ GY + +F GS +++Y CG
Sbjct: 434 LRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEAL 493
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN +I YA + AI +++ ++ G D VTF+++L CSH+G
Sbjct: 494 RTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNG 553
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L ++ F+ M+H + + P C+ MP+K D ++W +
Sbjct: 554 LADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSI 613
Query: 140 VSSCQVHSNVRLAKKAA 156
+ SC++H N LA+ AA
Sbjct: 614 LHSCRIHGNQELARVAA 630
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 17/117 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
P+ T+LS L + +G+QI ++V G ++ +G+A I++Y CG
Sbjct: 338 LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSN 397
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W +I GY +N E+A+ L+ D+ +G++ D TF +I+ S ++
Sbjct: 398 RSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMI 454
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC---------- 53
T F F+++L+ A ++ L LG Q+ +++ ++FV ++ ++ Y C
Sbjct: 235 THFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLF 294
Query: 54 -------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V++N +I YA N+ + L++++ G + + +L+
Sbjct: 295 DEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLS 345
>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 829
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 101/194 (52%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F F +++S+ A + L G+++ +K G+G+D +G++ +++Y CG
Sbjct: 455 STFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVF 514
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++W MI G A++ Y +A+ L+ D+IA+GVK + VT++A+L+ CSH+GLV
Sbjct: 515 DEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVK 574
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
E F M+ H + P+ C+ MP + D +VW L+ +
Sbjct: 575 EGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGA 634
Query: 143 CQVHSNVRLAKKAA 156
C+ H+N+ + + AA
Sbjct: 635 CKTHNNMDIGEIAA 648
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 21/123 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLF--LGRQILTRIVKDGY-GNDIFVGSAPINIYCNCG--- 54
+ P F +C S LF G +L + K G+ G D+ VG A I+++ G
Sbjct: 148 LLPNAFTLCAATQACFA-SELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLV 206
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W +I YA++ Y ++A+ L+ D++ +G + D T ++L+ C+
Sbjct: 207 AMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACT 266
Query: 101 HSG 103
G
Sbjct: 267 ELG 269
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/122 (19%), Positives = 57/122 (46%), Gaps = 21/122 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q+ +++LS+C +L S LG+Q+ + ++ G +D V +++Y
Sbjct: 253 PDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNA 312
Query: 55 ------------VTWNEMIHGYAENEYVE-QAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+ W ++ GY + + Q + L+ ++ G++ + +T+ ++L C++
Sbjct: 313 REVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACAN 372
Query: 102 SG 103
G
Sbjct: 373 LG 374
>gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 681
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F +V+S+CA +SSL LG Q+ R + G +D V ++ ++ YC CG
Sbjct: 437 RFSLASVISACACISSLELGEQVFARAIITGLESDQAVSTSLVDFYCKCGFIENGRKLFD 496
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+WN M+ GYA N Y + ++L+ ++ +G++ +TF +L+ C H GLV
Sbjct: 497 SMIKTDEVSWNSMLMGYATNGYGLETLTLFNEMKQAGLRPTDITFTGVLSACDHCGLVEE 556
Query: 108 EVEIFNSMEHDHEVKP---------------KCL---------MPYKDDLVVWGDLVSSC 143
+ FN M++D+ + P CL MP++ D +W ++ C
Sbjct: 557 GRKWFNIMKYDYHIDPGIEHYSCMVDLFARAGCLKEALNLVEHMPFEADCSMWSSVLRGC 616
Query: 144 QVHSNVRLAKKAA 156
H + L KK A
Sbjct: 617 VAHGDKDLGKKVA 629
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 48/146 (32%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F +V+ +CA L ++ G+Q+ RI+ D D + S+ IN+Y CG
Sbjct: 174 FVLASVIGACADLGAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVLKM 233
Query: 55 -------------------------------------VTWNEMIHGYAENEYVEQAISLY 77
V WN +I GY N +A +L
Sbjct: 234 MDEVDDFSLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALV 293
Query: 78 KDIIASGVKHDGVTFVAILTPCSHSG 103
++ + V+ D T IL+ CS +G
Sbjct: 294 NEMKNNRVQVDSSTITVILSACSSTG 319
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 16/92 (17%)
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD-GVTFV--AILTPCSHSGLVYAEVE 110
GV WN MIHGYA N + +A+ L+K++ ++ ++ G TFV +++ C+ G
Sbjct: 135 GVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACADLG------- 187
Query: 111 IFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSS 142
++E+ +V + LM DD+ + L+SS
Sbjct: 188 ---AIEYGKQVHARILM---DDVELDSVLISS 213
>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
Length = 1122
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F++++ + + L+ + LGRQ+ + +++ GY + +F GS +++Y CG
Sbjct: 434 LRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEAL 493
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN +I YA + AI +++ ++ G D VTF+++L CSH+G
Sbjct: 494 RTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNG 553
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L ++ F+ M+H + + P C+ MP+K D ++W +
Sbjct: 554 LADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSI 613
Query: 140 VSSCQVHSNVRLAKKAA 156
+ SC++H N LA+ AA
Sbjct: 614 LHSCRIHGNQELARVAA 630
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 17/117 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
P+ T+LS L + +G+QI ++V G ++ +G+A I++Y CG
Sbjct: 338 LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSN 397
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W +I GY +N E+A+ L+ D+ +G++ D TF +I+ S ++
Sbjct: 398 RSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMI 454
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC---------- 53
T F F+++L+ A ++ L LG Q+ +++ ++FV ++ ++ Y C
Sbjct: 235 THFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLF 294
Query: 54 -------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V++N +I YA N+ + L++++ G + + +L+
Sbjct: 295 DEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLS 345
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 96/194 (49%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F F ++LS A + ++ G QI R++K G + V +A I++Y CG
Sbjct: 476 SAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVF 535
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++W +I G+A++ + QA+ L+ ++ GV+ + VT++A+L+ CSH GLV
Sbjct: 536 EDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVN 595
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+ F SM +H V P+ C+ MPYK D +VW + +
Sbjct: 596 EGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGA 655
Query: 143 CQVHSNVRLAKKAA 156
C+VH N+ L K AA
Sbjct: 656 CRVHGNLELGKHAA 669
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 17/122 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F++ L +CA L++L +G Q+ T VK G+ + V ++ I++Y G
Sbjct: 372 VIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDAR 431
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+++N +I YA+N E+A+ L+ +I G+ TF ++L+ + G
Sbjct: 432 KAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIG 491
Query: 104 LV 105
+
Sbjct: 492 TI 493
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 21/131 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P +F + V+S+CA + L LG+Q+ ++ ++ G D VG IN+Y C V
Sbjct: 269 PDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAA 328
Query: 56 -------------TWNEMIHGYAEN-EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+W MI GY + Y E+A+ L++ +I + V + TF + L C++
Sbjct: 329 RKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACAN 388
Query: 102 SGLVYAEVEIF 112
+ ++F
Sbjct: 389 LAALRIGEQVF 399
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNC------- 53
YP ++ F +C+ + +G I ++K GY +D+ VG I+++
Sbjct: 165 YPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSA 224
Query: 54 -----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
VTW MI + Y +AI L+ D+I SG + D T +++ C++
Sbjct: 225 FKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANM 284
Query: 103 GLV 105
L+
Sbjct: 285 ELL 287
>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
Length = 770
Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 100/195 (51%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F+++LS C+ + +L G QI + +K G+ +D+ V SA +N+Y CG
Sbjct: 391 PDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKA 450
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW MI GY+++ ++AI L++D+ +GV+ + +TFV +L+ CS++GL
Sbjct: 451 FVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSACSYAGLA 510
Query: 106 YAEVEIFNSMEHDHEVKP-----KCLMP-------------------YKDDLVVWGDLVS 141
F+ M+ +++++P C++ ++ + +W LV+
Sbjct: 511 EKAEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLVA 570
Query: 142 SCQVHSNVRLAKKAA 156
C+ H N+ LA AA
Sbjct: 571 GCRSHGNMELAFYAA 585
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 28/128 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F T+V+S C L LG+Q+ K G +I V ++ + +Y G
Sbjct: 277 VLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAM 336
Query: 55 -----------VTWNEMIHGYAE-----------NEYVEQAISLYKDIIASGVKHDGVTF 92
+TWN MI GYA+ QA+ +++++ S +K D TF
Sbjct: 337 RFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMKPDLFTF 396
Query: 93 VAILTPCS 100
+IL+ CS
Sbjct: 397 SSILSVCS 404
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +L C + SL R + +VK G D+FV ++ +N Y CG
Sbjct: 81 YVPLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMP 140
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
VTW +I GY N + +A+ ++ +++ +G T A+L CS S
Sbjct: 141 EKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSAS 192
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP+ + +L++C+ ++ LG Q+ +K + +G++ +Y G
Sbjct: 176 YPSHYTLGAMLNACSASNNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMR 235
Query: 55 ----------VTWNEMIHGYAENE-YVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
+TW MI AE+E Y E ++L+ D++ GV + T ++++ C
Sbjct: 236 AFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLC 291
>gi|224066769|ref|XP_002302206.1| predicted protein [Populus trichocarpa]
gi|222843932|gb|EEE81479.1| predicted protein [Populus trichocarpa]
Length = 681
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+F T+V+S+CA +SSL LG QI R G +D + ++ ++ YC CG
Sbjct: 435 NRFNLTSVISACASISSLELGEQIFARATVVGLDSDEVISTSLVDFYCKCGFIEIGRKLF 494
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++WN M+ GYA N + +A++L+ ++ +GV+ +TF +L+ C H GLV
Sbjct: 495 DTMMKSDEISWNSMLMGYATNGHGLEALTLFNEMRHAGVRPTEITFTGVLSACDHCGLVK 554
Query: 107 AEVEIFNSMEHDHEVKP---------------KCL---------MPYKDDLVVWGDLVSS 142
FN M++D+ + P CL MP++ D +W ++
Sbjct: 555 EGWRWFNIMQYDYHIDPGIEHYSCMVDLFARAGCLEEAMNLIKRMPFEADASMWSSVLRG 614
Query: 143 CQVHSNVRLAKKAA 156
C H L +K A
Sbjct: 615 CMAHGEKDLGEKVA 628
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 50/143 (34%), Gaps = 48/143 (33%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F TV+ +C L + G+QI RI+ D D + S+ IN+Y CG
Sbjct: 173 FVLATVIGACTDLGEIQCGKQIHARILIDNMELDSVLTSSLINLYGKCGDLDSAHCVLNT 232
Query: 55 -------------------------------------VTWNEMIHGYAENEYVEQAISLY 77
V WN +I GY N +A L+
Sbjct: 233 MEEPDDFSLSALITGYANHGRMNDARRAFYRKSNSCVVVWNSLISGYVTNNEEIEAFLLF 292
Query: 78 KDIIASGVKHDGVTFVAILTPCS 100
D+ G+K D T IL+ CS
Sbjct: 293 NDMQKKGLKVDFSTLATILSACS 315
>gi|255568478|ref|XP_002525213.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535510|gb|EEF37179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 501
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 96/195 (49%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F FT++LS+C +L G +I++ G+ + + V +A I++YC G
Sbjct: 205 PNDFTFTSLLSACTGSGALGQGTSAHCQIIQMGFHSYLHVANALISMYCKSGSVHDAFYI 264
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI GYA++ QAI L++ + GVK D +TF+ +L+ C H+G V
Sbjct: 265 FNNIYSKDIVSWNSMISGYAQHGLAMQAIDLFEKMTKLGVKPDSITFLGVLSACRHAGFV 324
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
FNSM H ++P+ CL MP + V+WG L+S
Sbjct: 325 QGGRNYFNSMVEYH-LRPQLDHYSCLVDLLGRAGLIEEALDIILRMPILPNAVIWGSLLS 383
Query: 142 SCQVHSNVRLAKKAA 156
SC++H +V + +AA
Sbjct: 384 SCRLHGSVWIGIQAA 398
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 32 VKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQAI 74
+ G+ ++ +VGS+ I +Y CG VTW +I G+A+ V+ +
Sbjct: 133 ITSGFISNSYVGSSLITLYGKCGKLDNAHKLFHEMPVRNVVTWTAIISGFAQECQVDVCL 192
Query: 75 SLYKDIIASGVKHDGVTFVAILTPCSHSG 103
L+ + S +K + TF ++L+ C+ SG
Sbjct: 193 ELFSVMRNSTLKPNDFTFTSLLSACTGSG 221
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P VL +CA L++L GR+I I++ GY +D+ V A +++Y CG
Sbjct: 458 PDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQL 517
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ W MI GY + + ++AIS ++ + +G++ + +F +IL C+HSGL+
Sbjct: 518 FDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLL 577
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
++F+SM+ + ++PK C+ MP K D +WG L+S
Sbjct: 578 KEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLS 637
Query: 142 SCQVHSNVRLAKKAA 156
C++H +V LA+K A
Sbjct: 638 GCRIHHDVELAEKVA 652
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 18/117 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + T+V+ +CA +SL GR++ I K+ G+++ V +A +N+Y CG
Sbjct: 356 LRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEAN 415
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN MI GY++N +A+ L+ D + +K D VT +L C+
Sbjct: 416 LIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLD-MQKQLKPDDVTMACVLPACA 471
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +VL CA+L SL G+++ + I +G D +G+ + +Y NCG
Sbjct: 60 YCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGIL 119
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
WN ++ YA+ +++ L++ + G++ D TF +L + S V
Sbjct: 120 NDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKV 174
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
VL +CA + +L LGR + VK G+ + + +++Y CG
Sbjct: 262 LVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMG 321
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+W +I + +AI L+ ++ + G++ D +++ C+ S + E
Sbjct: 322 ETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGRE 381
Query: 111 IFNSMEHDH 119
+ N ++ ++
Sbjct: 382 VHNHIKKNN 390
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 17/115 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ FT VL A + + +++ ++K G+G+ V ++ I Y CG
Sbjct: 159 YTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDE 218
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI G N + + + ++ GV D T V +L C++ G
Sbjct: 219 LSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVG 273
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 98/196 (50%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q F +VL +C+ L+SL GR I + I G +D GSA +++Y CG
Sbjct: 752 PDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQV 811
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
++WN MI G+A+N Y E A+ ++ ++ + ++ D VTF+ +LT CSH+G
Sbjct: 812 FEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGR 871
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V EIF+ M H +++ P+ C+ + ++ + ++W L+
Sbjct: 872 VSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLL 931
Query: 141 SSCQVHSNVRLAKKAA 156
+C++H + ++AA
Sbjct: 932 GACRIHGDDIRGRRAA 947
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 67/117 (57%), Gaps = 17/117 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P +F +T++LS+CA L L +GRQ+ + I+K + ++FV + +++Y CG
Sbjct: 447 WPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQ 506
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I GY + E ++A ++++ +I G+ D V+ +IL+ C++
Sbjct: 507 QFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCAN 563
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 17/132 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P QF + VLSSCA+L + LG+Q+ ++K G+ + F + I++Y CG
Sbjct: 178 VSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDAR 237
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY + E+A+ +++D+ G+ D V FV ++T C G
Sbjct: 238 KIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLG 297
Query: 104 LVYAEVEIFNSM 115
+ ++F M
Sbjct: 298 RLDDACDLFVQM 309
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 18/117 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + ++LS CA L +L G Q+ +VK G ++ GS+ I++Y CG
Sbjct: 547 IAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAAR 606
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+ N +I GYA+N+ VE AI L++++ G+ +TF ++L C+
Sbjct: 607 YVFSCMPSRSVVSMNAIIAGYAQNDLVE-AIDLFQEMQNEGLNPSEITFASLLDACT 662
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V T+ +VLS+ A L +L G + + +K G ++++VGS+ IN+Y C
Sbjct: 345 VKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAK 404
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN M+ GYA+N Y + + L+ ++ G D T+ +IL+ C+
Sbjct: 405 KVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACA 461
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 21/118 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG--YGNDIFVGSAPINIYCNCG------ 54
P++ F ++L +C L LGRQI I K G Y D F+G + + +Y N
Sbjct: 649 PSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGD-FLGVSLLVMYMNSQRKTDAD 707
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ W +I G+ +N E+A+ LY+++ + + D TF ++L CS
Sbjct: 708 ILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACS 765
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 19/112 (16%)
Query: 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------ 54
PF A+ S + I + +K G+G+ +GSA +++Y CG
Sbjct: 85 PFDETPQRLAQASRT--SKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQL 142
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+ WN ++ Y+ +EQ I + + GV + T+ +L+ C+
Sbjct: 143 EKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCAR 194
>gi|225217042|gb|ACN85326.1| EMB2261 putative [Oryza brachyantha]
Length = 626
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ TVL +CA LSS+ G++I R ++ G D+ V SA +++Y CG
Sbjct: 343 YSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYAYTVFEA 402
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+TWN MI G+A+N + E+AI+L+ ++ G + D ++FV++L CSH+G+V
Sbjct: 403 STVRNTITWNAMIGGFAQNGHGERAINLFDRMVREGPRPDYISFVSVLFACSHTGMVEQG 462
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
+ FNSM +++ + P C++ P++ D +W ++ +
Sbjct: 463 RKYFNSMSNNYTIAPGIEHYNCMVDLLSRVELLEEAEDLINKSPFRGDSSLWAAILGASA 522
Query: 145 VHSNVRLAKKAA 156
HSN +A++ A
Sbjct: 523 THSNPDVAERVA 534
Score = 43.5 bits (101), Expect = 0.028, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P F+ + +C+ L G + I+ G+G+D V SA +++Y +
Sbjct: 137 VSPNAHAFSAAVKACSVLRDRNAGACLHGSILVRGFGDDDIVLSALVDMYGHASAPSDAQ 196
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKD-IIASGVKHDGVTFVAILT 97
G+ + +I + N++ E+A+ ++ ++ +GV+ DG TF +++T
Sbjct: 197 KAFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMT 251
Score = 39.3 bits (90), Expect = 0.49, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F +++++ L GRQ ++V G ++ V S+ +++Y CG
Sbjct: 239 VRPDGCTFGSMMTALGNLKRENQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGSMVEAR 298
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDI 80
V+W ++ GY +N E+ ++L++++
Sbjct: 299 KVFDRMLVRNEVSWCALLGGYCQNGEYEKVVALFREM 335
>gi|414875841|tpg|DAA52972.1| TPA: hypothetical protein ZEAMMB73_038558 [Zea mays]
Length = 641
Score = 99.4 bits (246), Expect = 4e-19, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 41/187 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TVLS+C +L +L LG+++ +K V + +N Y CG
Sbjct: 346 PNAVTLATVLSACTQLLALRLGQEVHGHTIKAALDRHSLVQNGLVNTYGKCGKVATARKV 405
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN MI Y + ++A+++++D+ + ++ DGVTFVA+L+ CSH+G V
Sbjct: 406 FDGMKSRDLISWNSMIGSYGAHGMCDEALAMFQDLTRALIEPDGVTFVAVLSACSHTGRV 465
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+F+ M +H++ P C+ MP K DL VWG L++
Sbjct: 466 AEGRRLFDQMVREHKISPTMEHYTCMVDLLGRAGLLRGACELIDTMPMKPDLCVWGALLN 525
Query: 142 SCQVHSN 148
SC++H +
Sbjct: 526 SCRIHGD 532
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P QF F++VL SCA L L GRQ+ + K G + + SA I++Y CG
Sbjct: 525 PNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKV 584
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W +I GYA++ VE A+ L++ + SG+K + VT + +L CSH G+V
Sbjct: 585 FDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMV 644
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F ME + V P+ C+ MP + + +VW L+
Sbjct: 645 EEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLG 704
Query: 142 SCQVHSNVRLAKKAA 156
C+VH NV L + AA
Sbjct: 705 GCRVHGNVELGEIAA 719
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 17/94 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F ++ ++ SC L SL LG+ + +IV G+ IFV ++ +N+Y G
Sbjct: 217 ILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSY 276
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLY 77
V+WN MI G N +A L+
Sbjct: 277 WVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLF 310
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 19/119 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC----------- 51
P + +V + KL + +G+++ + G ++ VG+A I++Y
Sbjct: 320 PNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSV 379
Query: 52 ------NCGVT--WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
NCGV WN MI GY+++ ++A+ LY + +G+ D T+ ++ + S
Sbjct: 380 FDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAAS 438
>gi|297851320|ref|XP_002893541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339383|gb|EFH69800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 520
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 41/196 (20%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P F +V+ +C+ L+ +G+Q+ +I+K G I +GS+ +++Y CG
Sbjct: 270 HPNISTFASVIGACSVLTCHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGIDDARR 329
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+W MI GY +N E+A+ L+ + ++ + VTF+ +L+ CSHSGL
Sbjct: 330 VFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFHIEPNYVTFLGVLSACSHSGL 389
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V EIF SM+ D+ +KPK C+ MP + + VW L+
Sbjct: 390 VDKGYEIFESMQRDYSMKPKMEHYACMVDLMGRAGELNKAFEFVRAMPERHNSDVWAALL 449
Query: 141 SSCQVHSNVRLAKKAA 156
SSC +H NV LA AA
Sbjct: 450 SSCNLHGNVDLASIAA 465
>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
Length = 1008
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F++++ + + L+ + LGRQ+ + +++ GY + +F GS +++Y CG
Sbjct: 632 LRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEAL 691
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN +I YA + AI +++ ++ G D VTF+++L CSH+G
Sbjct: 692 RTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNG 751
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L ++ F+ M+H + + P C+ MP+K D ++W +
Sbjct: 752 LADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSI 811
Query: 140 VSSCQVHSNVRLAKKAA 156
+ SC++H N LA+ AA
Sbjct: 812 LHSCRIHGNQELARVAA 828
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 17/117 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
P+ T+LS L + +G+QI ++V G ++ +G+A I++Y CG
Sbjct: 536 LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSN 595
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W +I GY +N E+A+ L+ D+ +G++ D TF +I+ S ++
Sbjct: 596 RSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMI 652
>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
Length = 852
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 41/189 (21%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
++VLS+CA L +++ G++I ++K D+F SA I++Y CG
Sbjct: 554 SSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPE 613
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I Y V++++SL + + G K D VTF+A+++ C+H+G V + +
Sbjct: 614 KNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRL 673
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F M ++++ P+ C+ MP+K D +WG L+ +C+VH
Sbjct: 674 FRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHR 733
Query: 148 NVRLAKKAA 156
NV LA+ A+
Sbjct: 734 NVELAEIAS 742
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 68/128 (53%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +VL +CA ++++ LG+++ + +K+ Y +V SA +++Y CG
Sbjct: 445 IRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSH 504
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI +A+N E+A++L++++ GVK+ VT ++L+ C+
Sbjct: 505 YIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLP 564
Query: 104 LVYAEVEI 111
+Y EI
Sbjct: 565 AIYYGKEI 572
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 43/182 (23%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F V+ SCA L ++ LGR + G D+FVGSA I +Y N G
Sbjct: 144 PDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQV 203
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT-PCSHSGL 104
V WN M+ GY + V A+ L+ D+ ASG + + T L+ + S L
Sbjct: 204 FDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDL 263
Query: 105 VY--------------AEVEIFNSMEHDHEVKPKC---------LMPYKDDLVVWGDLVS 141
+ +EV + N++ + K KC LMP +DDLV W ++S
Sbjct: 264 FFGVQLHTLAVKYGLESEVAVANTLVSMY-AKCKCLDDGWKLFGLMP-RDDLVTWNGMIS 321
Query: 142 SC 143
C
Sbjct: 322 GC 323
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P LS A S LF G Q+ T VK G +++ V + +++Y C
Sbjct: 245 PNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKL 304
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
VTWN MI G +N +V+QA+ L+ D+ SG++ D VT V++L
Sbjct: 305 FGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLL 355
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P ++L + L+ G+++ IV++ D+F+ SA ++IY C
Sbjct: 344 IRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQ 403
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V + MI GY N ++A+ +++ ++ G++ + V ++L C+
Sbjct: 404 SVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACA 460
>gi|356509350|ref|XP_003523413.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Glycine max]
Length = 678
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F F +V+S+CA SSL LG Q+ + + G +D + ++ ++ YC CG
Sbjct: 433 RFSFASVISACACRSSLELGEQVFGKAITIGLESDQIISTSLVDFYCKCGFVEIGRKVFD 492
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+WN M+ GYA N Y +A++L+ ++ GV +TF +L+ C HSGLV
Sbjct: 493 GMVKTDEVSWNTMLMGYATNGYGIEALTLFCEMTYGGVWPSAITFTGVLSACDHSGLVEE 552
Query: 108 EVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSC 143
+F++M+H + + P C+ MP++ D +W ++ C
Sbjct: 553 GRNLFHTMKHSYNINPGIEHFSCMVDLFARAGYFEEAMDLIEEMPFQADANMWLSVLRGC 612
Query: 144 QVHSNVRLAKKAA 156
H N + K AA
Sbjct: 613 IAHGNKTIGKMAA 625
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 59/159 (37%), Gaps = 52/159 (32%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN--DIFVGSAPINIYCNCG---- 54
VY F T L +CA +L G+Q+ R+ DG G D + S+ IN+Y CG
Sbjct: 163 VYRDAFVLATALGACADSLALNCGKQVHARVFVDGMGLELDRVLCSSLINLYGKCGDLDS 222
Query: 55 --------------------------------------------VTWNEMIHGYAENEYV 70
V WN +I GY N
Sbjct: 223 AARIVSFVRDVDEFSLSALISGYANAGRMREARSVFDSKVDPCAVLWNSIISGYVSNGEE 282
Query: 71 EQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEV 109
+A++L+ ++ +GV+ D IL+ SGL+ E+
Sbjct: 283 VEAVNLFSAMLRNGVQGDASAVANILSAA--SGLLVVEL 319
>gi|255572826|ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533264|gb|EEF35017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 687
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 80/138 (57%), Gaps = 17/138 (12%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F ++VL+ C++LS+L G Q+ + +K GY +D+ VG+A +N+Y CG
Sbjct: 386 PDLFTLSSVLTVCSRLSALGQGEQLHAQTIKSGYLSDVVVGTALVNMYSKCGSIGKASKA 445
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI G A++ + EQA+ L++D+ +GV+ + +TFV +L C HSG+V
Sbjct: 446 FVEMSTRTLISWTTMITGLAQHGHSEQALQLFEDMRLAGVRPNQITFVGVLAACCHSGMV 505
Query: 106 YAEVEIFNSMEHDHEVKP 123
+ F M+ ++ +KP
Sbjct: 506 DEALGYFEMMQKEYRIKP 523
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 28/129 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F TTVLS C +L LGR + + +K GY ++ + ++ + +Y CG
Sbjct: 272 IKPNEFTLTTVLSLCCVTLALVLGRLVHSLSIKLGYQYNLRITNSIMYLYLKCGHMDEAQ 331
Query: 55 -----------VTWNEMIHGYAE------NEYVEQ-----AISLYKDIIASGVKHDGVTF 92
VTWN MI G+A+ +++ Q A+S++ ++ +G K D T
Sbjct: 332 ILFHKMGSTNLVTWNAMISGHAQAMDLAKDDFSAQRSGIEALSIFLELNRTGKKPDLFTL 391
Query: 93 VAILTPCSH 101
++LT CS
Sbjct: 392 SSVLTVCSR 400
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +L C K +S+ + I I+K G D+ V ++ +N+Y CG
Sbjct: 77 YLPLLQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVYAKCGAMGNARKIFDSLH 136
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W ++ GY +N AI +++D++ SG T L CS
Sbjct: 137 RRNVVAWTALMTGYVQNSQPNIAIDVFQDMLESGTLPSNYTLGIALNACS 186
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/114 (18%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ + L++C+ ++S+ LG+Q+ ++K D +G+A ++Y G
Sbjct: 173 PSNYTLGIALNACSAINSIKLGKQLHAFVIKYKLDYDPSIGNALCSLYSKLGSLDSSINV 232
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++W +I EN + + +++ +K + T +L+ C
Sbjct: 233 FQSIGEKNVISWTAVISACGENGKAAMGLRFFNEMLLEDIKPNEFTLTTVLSLC 286
>gi|125524834|gb|EAY72948.1| hypothetical protein OsI_00820 [Oryza sativa Indica Group]
Length = 370
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 91/187 (48%), Gaps = 41/187 (21%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+L + A LSSL GR++ V+ GY D FV +A +++Y CG
Sbjct: 4 ILPTAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKN 63
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113
++W MI GY + AI+L++ + SG++ D +F AIL CSHSGL FN
Sbjct: 64 LISWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFN 123
Query: 114 SMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSNV 149
+M ++H ++PK C+ MP + D +W L+ C++H NV
Sbjct: 124 AMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNV 183
Query: 150 RLAKKAA 156
+LA+K A
Sbjct: 184 KLAEKVA 190
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 96/194 (49%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F F ++LS A + ++ G QI R++K G + V +A I++Y CG
Sbjct: 476 SAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVF 535
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++W +I G+A++ + QA+ L+ ++ GV+ + VT++A+L+ CSH GLV
Sbjct: 536 EDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVN 595
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+ F SM +H V P+ C+ MPYK D +VW + +
Sbjct: 596 EGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGA 655
Query: 143 CQVHSNVRLAKKAA 156
C+VH N+ L K AA
Sbjct: 656 CRVHGNLELGKHAA 669
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 17/122 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F++ L +CA L++L +G Q+ T VK G+ + V ++ I++Y G
Sbjct: 372 VIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDAR 431
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+++N +I YA+N E+A+ L+ +I G+ TF ++L+ + G
Sbjct: 432 KAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIG 491
Query: 104 LV 105
+
Sbjct: 492 TI 493
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 21/131 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P +F + V+S+CA + L LG+Q+ ++ ++ G D VG IN+Y C V
Sbjct: 269 PDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAA 328
Query: 56 -------------TWNEMIHGYAEN-EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+W MI GY + Y E+A+ L++ +I + V + TF + L C++
Sbjct: 329 RKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACAN 388
Query: 102 SGLVYAEVEIF 112
+ ++F
Sbjct: 389 LAALRIGEQVF 399
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNC------- 53
YP ++ F +C+ + +G I +VK GY +D+ VG I+++
Sbjct: 165 YPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSA 224
Query: 54 -----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
VTW MI + Y +AI L+ ++I SG + D T +++ C++
Sbjct: 225 FKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANM 284
Query: 103 GLV 105
L+
Sbjct: 285 ELL 287
>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
Length = 582
Score = 99.4 bits (246), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 41/194 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P VLSSCA L +L +G+++ ++ G+ ++ F+ +A +N+Y CG
Sbjct: 212 PDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDI 271
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W +I GY + E A+ L+ ++I G+K DG FV++L+ CSH+GL
Sbjct: 272 FDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLT 331
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
++ F ME + ++P C+ M + D +WG L+
Sbjct: 332 NKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLG 391
Query: 142 SCQVHSNVRLAKKA 155
+C++H NV LA+ A
Sbjct: 392 ACKIHRNVELAELA 405
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 17/123 (13%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC-----NCG----------- 54
++ C +L LG + VK G D VG+ + +Y +CG
Sbjct: 119 LVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKG 178
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113
+TWN MI+GYA+N + LYK++ + G D +T V +L+ C+H G + E+
Sbjct: 179 LITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVER 238
Query: 114 SME 116
ME
Sbjct: 239 KME 241
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 19/120 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F + SCA LS G+Q+ + K G + FV ++ I++Y C
Sbjct: 8 PNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKL 67
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V +N ++ GYA N V+ + L+ ++ GV+ +GVT + ++ PC G
Sbjct: 68 FDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPG 127
>gi|326515584|dbj|BAK07038.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 594
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F+++LS C+ + +L G QI +K G +D+ V SA +N+Y CG
Sbjct: 207 PDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKA 266
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW MI GY+++ + AI L++D++ SG + + +TFV++L+ CS++GLV
Sbjct: 267 FVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLV 326
Query: 106 YAEVEIFNSMEHDHEVKP-----KCLMP-------------------YKDDLVVWGDLVS 141
F+ M +++ ++P C++ ++ + +W LV+
Sbjct: 327 EEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVA 386
Query: 142 SCQVHSNVRLAKKAA 156
C+ H N+ LA AA
Sbjct: 387 GCRSHGNMELAFYAA 401
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 37/183 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F T+V+S C + LG+Q+ K G ++ V ++ + +Y G
Sbjct: 93 VMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAM 152
Query: 55 -----------VTWNEMIHGYAE-----------NEYVEQAISLYKDIIASGVKHDGVTF 92
+TWN MI GYA+ QA+ L++D++ S +K D TF
Sbjct: 153 RLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTF 212
Query: 93 VAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLA 152
+IL+ CS + +I H + +K CL D+VV LV+ ++ A
Sbjct: 213 SSILSVCSAMMALEQGEQI-----HANTIKTGCL----SDVVVNSALVNMYNKCGSIECA 263
Query: 153 KKA 155
KA
Sbjct: 264 TKA 266
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+LS+C+ + LG+Q+ +K G +G++ +YC G
Sbjct: 1 MLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKN 60
Query: 55 -VTWNEMIHGYAENE-YVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
+TW MI AE+E Y++ +SL+ D++ GV + T ++++ C
Sbjct: 61 VITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLC 107
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P QF F++VL SCA L L GRQ+ + K G + + SA I++Y CG
Sbjct: 471 PNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKV 530
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W +I GYA++ VE A+ L++ + SG+K + VT + +L CSH G+V
Sbjct: 531 FDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMV 590
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F ME + V P+ C+ MP + + +VW L+
Sbjct: 591 EEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLG 650
Query: 142 SCQVHSNVRLAKKAA 156
C+VH NV L + AA
Sbjct: 651 GCRVHGNVELGEIAA 665
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 17/94 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F ++ ++ SC L SL LG+ + +IV G+ IFV ++ +N+Y G
Sbjct: 163 ILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSY 222
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLY 77
V+WN MI G N +A L+
Sbjct: 223 WVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLF 256
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 19/119 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC----------- 51
P + +V + KL + +G+++ + G ++ VG+A I++Y
Sbjct: 266 PNMYTLVSVSKAVGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSV 325
Query: 52 ------NCGVT--WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
NCGV WN MI GY+++ ++A+ LY + +G+ D T+ ++ + S
Sbjct: 326 FDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAAS 384
>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 776
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F+++LS C+ + +L G QI +K G +D+ V SA +N+Y CG
Sbjct: 389 PDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKA 448
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW MI GY+++ + AI L++D++ SG + + +TFV++L+ CS++GLV
Sbjct: 449 FVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLV 508
Query: 106 YAEVEIFNSMEHDHEVKP-----KCLMP-------------------YKDDLVVWGDLVS 141
F+ M +++ ++P C++ ++ + +W LV+
Sbjct: 509 EEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVA 568
Query: 142 SCQVHSNVRLAKKAA 156
C+ H N+ LA AA
Sbjct: 569 GCRSHGNMELAFYAA 583
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 37/183 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F T+V+S C + LG+Q+ K G ++ V ++ + +Y G
Sbjct: 275 VMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAM 334
Query: 55 -----------VTWNEMIHGYAE-----------NEYVEQAISLYKDIIASGVKHDGVTF 92
+TWN MI GYA+ QA+ L++D++ S +K D TF
Sbjct: 335 RLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTF 394
Query: 93 VAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLA 152
+IL+ CS + +I H + +K CL D+VV LV+ ++ A
Sbjct: 395 SSILSVCSAMMALEQGEQI-----HANTIKTGCL----SDVVVNSALVNMYNKCGSIECA 445
Query: 153 KKA 155
KA
Sbjct: 446 TKA 448
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP+ + +LS+C+ + LG+Q+ +K G +G++ +YC G
Sbjct: 174 YPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLR 233
Query: 55 ----------VTWNEMIHGYAENE-YVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
+TW MI AE+E Y++ +SL+ D++ GV + T ++++ C
Sbjct: 234 AFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLC 289
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +L C + L R + +VK G D+FV ++ +N+Y C
Sbjct: 79 YVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMP 138
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTW +I G+ N A+ ++ +++ G T +L+ CS
Sbjct: 139 DKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACS 188
>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
Length = 851
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P ++L+ CA L+ L GR++ +++ + DI+ SA I +Y CG
Sbjct: 329 IRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAK 388
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ E+A+ ++ D+ +G+ DG+T++ LT CS++G
Sbjct: 389 RVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTG 448
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
V +IFNSM +KP C+ MP + D V+WG L
Sbjct: 449 KVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPVEPDAVIWGAL 508
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N +A+ +A
Sbjct: 509 MGACRMHKNAEIAEISA 525
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 38/60 (63%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
TW+ +I Y +NE++ +A+S +++++ G++ + + ++ILT C+ ++ E+ +M
Sbjct: 300 TWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAM 359
>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 843
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 97/189 (51%), Gaps = 41/189 (21%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
++VLS+CA L +++ G++I ++K D+F SA I++Y CG
Sbjct: 554 SSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPE 613
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I Y V++++SL + + G K D VTF+A+++ C+H+G V + +
Sbjct: 614 KNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRL 673
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F M ++++ P+ C+ MP+K D +WG L+ +C+VH
Sbjct: 674 FRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHR 733
Query: 148 NVRLAKKAA 156
NV LA+ A+
Sbjct: 734 NVELAEIAS 742
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 68/128 (53%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +VL +CA ++++ LG+++ + +K+ Y +V SA +++Y CG
Sbjct: 445 IRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSH 504
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI +A+N E+A++L++++ GVK+ VT ++L+ C+
Sbjct: 505 YIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLP 564
Query: 104 LVYAEVEI 111
+Y EI
Sbjct: 565 AIYYGKEI 572
Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 78/182 (42%), Gaps = 43/182 (23%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F V+ SCA L ++ LGR + G D+FVGSA I +Y N G
Sbjct: 144 PDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQV 203
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT-PCSHSGL 104
V WN M+ GY + V A+ L+ D+ ASG + + T L+ + S L
Sbjct: 204 FDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDL 263
Query: 105 VY--------------AEVEIFNSMEHDHEVKPKC---------LMPYKDDLVVWGDLVS 141
+ +EV + N++ + K KC LMP +DDLV W ++S
Sbjct: 264 FFGVQLHTLAVKYGLESEVAVANTLVSMY-AKCKCLDDGWKLFGLMP-RDDLVTWNGMIS 321
Query: 142 SC 143
C
Sbjct: 322 GC 323
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P LS A S LF G Q+ T VK G +++ V + +++Y C
Sbjct: 245 PNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKL 304
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
VTWN MI G +N +V+QA+ L+ D+ SG++ D VT V++L
Sbjct: 305 FGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLL 355
Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P ++L + L+ G+++ IV++ D+F+ SA ++IY C
Sbjct: 344 IRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQ 403
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V + MI GY N ++A+ +++ ++ G++ + V ++L C+
Sbjct: 404 SVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACA 460
>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Brachypodium distachyon]
Length = 818
Score = 99.0 bits (245), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 100/194 (51%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F F ++LS+ A + L G+++ +K G+ +D + ++ +++Y CG
Sbjct: 445 STFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAF 504
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++W +I G A++ Y +QA+S++ D+I +GVK + VT++A+L+ CSH GLV
Sbjct: 505 DEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVK 564
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
E F SM+ DH + P+ C+ MP K D +VW L+S+
Sbjct: 565 EGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSA 624
Query: 143 CQVHSNVRLAKKAA 156
C+ + N + + AA
Sbjct: 625 CRTYGNTEIGEIAA 638
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/120 (17%), Positives = 58/120 (48%), Gaps = 21/120 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + ++++S+C +L S+ LG+Q+ + ++ G +D V +++Y
Sbjct: 244 PDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHA 303
Query: 55 ------------VTWNEMIHGYAENEYVE-QAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W +I GY ++ E ++L+++++ ++ + +T+ +L C++
Sbjct: 304 RKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACAN 363
>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Glycine max]
Length = 686
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 98/199 (49%), Gaps = 43/199 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT F ++VLS+CA+L L LGR + +K +IFVGSA +++Y CG
Sbjct: 308 VEPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAE 367
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIAS--GVKHDGVTFVAILTPCSH 101
VTWN MI GYA V+ A+SL++++ + G+ VT V++L+ CS
Sbjct: 368 QVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSR 427
Query: 102 SGLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWG 137
+G V ++IF SM + ++P C+ MP + VWG
Sbjct: 428 AGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWG 487
Query: 138 DLVSSCQVHSNVRLAKKAA 156
L+ +C++H +L K AA
Sbjct: 488 ALLGACKMHGKTKLGKIAA 506
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 36/181 (19%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P F F V + A L G+Q+ +K G D+FVG + ++Y G+
Sbjct: 105 VLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEAR 164
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN + ++ AI+ +K + + + +TF A L C+
Sbjct: 165 NMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACAD-- 222
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVW----------GDLVSSCQVHSNVRLAK 153
+E+ + H V+ + Y++D+ V+ GD+VSS V S + +
Sbjct: 223 --IVSLELGRQL-HGFIVRSR----YREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGR 275
Query: 154 K 154
+
Sbjct: 276 R 276
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F + +S+ A ++++ G+QI I+K G+ +DI V +A I Y CG
Sbjct: 618 FTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCE 677
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN MI GY+++ Y +A++L++ + G + VTFV +L+ CSH GLV
Sbjct: 678 MPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKG 737
Query: 109 VEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQ 144
+ F SM +H + PK C+ MP + D +W L+S+C
Sbjct: 738 LGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACT 797
Query: 145 VHSNVRLAKKAA 156
VH NV + + AA
Sbjct: 798 VHKNVEVGEFAA 809
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 26/156 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P QF + ++L +C + +L LG QI T+++K G+ +++V S I++Y G
Sbjct: 413 PNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVI 472
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W +I GYA++ +A+ +K+++ G++ D + F + ++ C
Sbjct: 473 LRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISAC------ 526
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
A ++ N H + Y +DL + LVS
Sbjct: 527 -AGIQALNQGRQIH--AQSYVSGYSEDLSIGNALVS 559
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 83/179 (46%), Gaps = 41/179 (22%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F++ +S+CA + +L GRQI + GY D+ +G+A +++Y CG
Sbjct: 519 FSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKID 578
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS---------- 100
++WN +I G+A++ Y E A+ ++ + + ++ TF + ++ +
Sbjct: 579 AKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQ 638
Query: 101 -HSGLVY----AEVEIFNSM--------EHDHEVKPKCLMPYKDDLVVWGDLVSSCQVH 146
H+ ++ +++E+ N++ + + C MP K+D V W +++ H
Sbjct: 639 IHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKND-VSWNAMITGYSQH 696
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
++PT + F++VLS C K+ +G Q+ + K G + +V +A + +Y
Sbjct: 209 IFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAE 268
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N +I G A+ + + A+ L+ + +K D VT ++L+ C+ +G
Sbjct: 269 KVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNG 328
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++LS+CA +L G Q+ + ++K G +D+ V A +++Y NC
Sbjct: 312 PDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEM 371
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN M+ + + + + ++ +++ + G+ + T+ +IL C+ G
Sbjct: 372 FLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVG 429
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 25/139 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLS-SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
V PT+ F +VL +C+ + QI RI+ G + + I +Y G
Sbjct: 107 VSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISA 166
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+W MI G+++N Y E+AI L+ ++ +G+ F ++L+ C+
Sbjct: 167 RKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCT-- 224
Query: 103 GLVYAEVEIFNSMEHDHEV 121
++++F+ E H +
Sbjct: 225 -----KIKLFDVGEQLHAL 238
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+L C SL +++ +I+K G+GN+ + + +++Y G
Sbjct: 16 LLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRS 75
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS--HSGLVYAE 108
+W+++I G+ E + + + L+ +I V ++F ++L CS G+ YAE
Sbjct: 76 VRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAE 132
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F + VLS+CA++ + LG + K G D+F+G+A I++Y CG
Sbjct: 307 PDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIW-DVFIGTALIDMYAKCGFIGAARKV 365
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TWN ++ GYA + E AI L+ ++ SG + D +TF+A+L C+HSGLV
Sbjct: 366 FDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLV 425
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVS 141
+ F+ M +++ P+ +M + ++VVWG L+S
Sbjct: 426 ENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLS 485
Query: 142 SCQVHSNVRLAKKAA 156
+C +H N+ + + AA
Sbjct: 486 ACSIHGNIEIGEWAA 500
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 18/121 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND-IFVGSAPINIYCNCG----- 54
V P + ++ +C + +L LGR I ++KD + + + +A IN+Y CG
Sbjct: 203 VRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGA 262
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V WN +I GY + + + I L +++ S +K D T +L+ C+
Sbjct: 263 RKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSGVLSACAQM 322
Query: 103 G 103
G
Sbjct: 323 G 323
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 20/115 (17%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+PF V +CA ++ G+++ IV+ GY D F+ S+ +N Y CG
Sbjct: 108 YPF--VFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDE 165
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDII-ASGVKHDGVTFVAILTPCSHS 102
V WN +I GYA V + ++K+++ V+ + T + ++ C S
Sbjct: 166 FDAKDVVFWNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIES 220
>gi|357446911|ref|XP_003593731.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482779|gb|AES63982.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 520
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 101/196 (51%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F +++ +C+ L++ +G Q+ +++K + I +GSA I++Y CG
Sbjct: 273 PNLSTFASIIGACSVLAAFEIGEQVQAQLMKTPFFAVIKLGSALIDMYSKCGRVIDAQRV 332
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDI-IASGVKHDGVTFVAILTPCSHSGL 104
+W MI GY +N + ++A+ L+K + I + + VTF++ LT C+H+GL
Sbjct: 333 FDHMLEKNVFSWTSMIDGYGKNGFPDEALELFKKMQIEYSITPNFVTFLSALTACAHAGL 392
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V EIF SME ++++KP+ C+ MP + + VW L+
Sbjct: 393 VERGWEIFQSMESEYKLKPRMEHYACMVDLLGRAGWLNQAWEFVTRMPERPNSDVWLALL 452
Query: 141 SSCQVHSNVRLAKKAA 156
SSC++H N+ +AK AA
Sbjct: 453 SSCRIHGNIEMAKLAA 468
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+N MI GY +N V++++ L+ + SG K DG TF IL ++
Sbjct: 106 YNYMIGGYLKNGQVDESLDLFHQLSVSGEKPDGFTFSMILKASTN 150
>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
Length = 635
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F + VL +CA+ +S LG+Q+ R+ K G+ F SA +++Y G
Sbjct: 259 IQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGDMGTAV 318
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GYA+N ++A+ + ++ SG + D VTFV +L+ C+H+G
Sbjct: 319 RVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSACAHAG 378
Query: 104 LVYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDL 139
LV + IF+S++ ++ ++ M K + +W L
Sbjct: 379 LVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMINTMSVKPNKFLWASL 438
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C++H NVRLA+ AA
Sbjct: 439 LGGCRIHKNVRLARWAA 455
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 17/94 (18%)
Query: 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAE 66
GR++ +V+ G D V SA ++Y CG V+W M+ Y +
Sbjct: 181 GRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFD 240
Query: 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ L+ ++ SG++ + T+ +L C+
Sbjct: 241 ARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACA 274
>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Cucumis sativus]
Length = 724
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F F VL++CA L++ LG+QI +V+ G+ + SA +++Y CG
Sbjct: 348 IMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAK 407
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+W ++ GYA++ ++A+ ++ ++ SG K DG+ F+ +L+ C+H+G
Sbjct: 408 SVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAG 467
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +E F+S++ H + C+ MP K D +W L
Sbjct: 468 LVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAAL 527
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C++H N+ LAK+AA
Sbjct: 528 LGGCRIHGNLELAKRAA 544
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 17/100 (17%)
Query: 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEM 60
+ SL +G++I I++ G +D V + +++Y CG V+W M
Sbjct: 264 IPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTM 323
Query: 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
IH Y +N E+ +L++ ++ S + + TF +L C+
Sbjct: 324 IHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACA 363
Score = 41.6 bits (96), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 23/141 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + T+L C K +L G+Q+ I G +++ + +++Y CG
Sbjct: 117 PYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDAEKV 175
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN MI GY + E+A +L+ + D ++ AI++ C
Sbjct: 176 FDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKM----PNRDNFSWTAIISGCVQHNRP 231
Query: 106 YAEVEIFNSME-HDHEVKPKC 125
+E++ M+ HD+ KC
Sbjct: 232 EEALELYRLMQKHDYSKSNKC 252
>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 690
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
F + V+ CA+L+SL +Q +V+ GY DI +A ++ Y G
Sbjct: 319 HFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFN 378
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
++WN +I GY + E+A+ +++ ++ G+ + VTF+A+L+ CS+SGL
Sbjct: 379 RMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLSER 438
Query: 108 EVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDLVSSC 143
EIF SM DH+VKP+ + P+K +W L+++C
Sbjct: 439 GWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATLLTAC 498
Query: 144 QVHSNVRLAKKAA 156
++H N+ L K AA
Sbjct: 499 RMHENLELGKLAA 511
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 18/119 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
FTT++ + A L + +GRQI + +K G G+D FV A I++Y CG
Sbjct: 221 FTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMP 280
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH-SGLVYAE 108
V WN +I YA + Y E+A+S Y ++ SG K D T ++ C+ + L YA+
Sbjct: 281 EKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAK 339
>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 748
Score = 99.0 bits (245), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +V+SSCA L+SL G Q R + G + I V +A + +Y CG
Sbjct: 372 IEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSH 431
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW ++ GYA+ + I L++ ++A G+K D VTF+ +L+ CS +G
Sbjct: 432 RLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAG 491
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV +IF SM ++H + P C+ MP+ D + W L
Sbjct: 492 LVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATL 551
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC+ + N+ + K AA
Sbjct: 552 LSSCRFYGNMDIGKWAA 568
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 62/114 (54%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q+ F +VL++C + +L G+Q+ I++ Y ++IFV SA +++YC C
Sbjct: 275 QYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFK 334
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W M+ GY +N Y E+A+ + D+ G++ D T ++++ C++
Sbjct: 335 KMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCAN 388
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 30/157 (19%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F+T+L +K + LGRQI +VK G+ + +FVGS +++Y G
Sbjct: 142 NRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVF 201
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V +N +I G VE + L+ ++ + D +++ +++T + +GL
Sbjct: 202 DELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEM----RERDSISWTSMITGFTQNGLDR 257
Query: 107 AEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143
++IF M+ L + D +G ++++C
Sbjct: 258 DAIDIFREMK---------LENLQMDQYTFGSVLTAC 285
>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 698
Score = 99.0 bits (245), Expect = 6e-19, Method: Composition-based stats.
Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
++ F+ L SC+ L+ L LGRQI +++ G+ ++ FV S+ I +Y G
Sbjct: 407 EYAFSAALRSCSDLALLRLGRQIHGLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFE 466
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V WN M+ GYA++ + SL+ ++ V D +TFV ++T CSH+GLV
Sbjct: 467 EADKSSSVPWNSMMFGYAQHGKAQAVRSLFNQMLELKVPLDHITFVGLITACSHAGLVDE 526
Query: 108 EVEIFNSMEHDHEV---------------------KPKCL---MPYKDDLVVWGDLVSSC 143
EI N+ME + + K K L MP++ D +VW L+ +C
Sbjct: 527 GSEILNTMESRYGIPLRMEHYACGIDLYGRAGQLDKAKELIDSMPFEPDAMVWMTLLGAC 586
Query: 144 QVHSNVRLAKKAA 156
+VH N+ LA A
Sbjct: 587 RVHGNMELASDVA 599
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F + L S A + LG Q+ + VK G +++F +A +++Y CG
Sbjct: 102 FALGSALRSAAAMGCSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRTRDACRLFDG 161
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN ++ GY E+ V A+ L+ ++ G D TF A+LT + S
Sbjct: 162 MPERNTVSWNALVAGYVESGKVAPAVQLFVEMEREGFLPDEATFAALLTVVNDS 215
Score = 45.8 bits (107), Expect = 0.006, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 24/126 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F +L+ S+ FL Q+ +IVK G + V +A I Y CG
Sbjct: 200 PDEATFAALLTVVND-STCFLMHQLHGKIVKYGSALGLIVLNAAITAYSQCGALANSRRI 258
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDII-ASGVKHDGVTFVAILTPCS--- 100
++WN M+ YA + +A+ + ++ ASGV+ D +F +I++ C+
Sbjct: 259 FDEIGDRSDLISWNAMLGAYATHGMEHEAMRFFASMMRASGVQPDMYSFTSIISACAEHR 318
Query: 101 -HSGLV 105
H G V
Sbjct: 319 DHGGTV 324
Score = 40.4 bits (93), Expect = 0.25, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 21/125 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC----NC--- 53
V P + FT+++S+CA+ G I + K+G+ V +A I +Y NC
Sbjct: 300 VQPDMYSFTSIISACAEHRD-HGGTVIHGLVSKNGFEGVTHVCNALIAMYTRFSENCMME 358
Query: 54 -------------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN M+ GY+++ A+ ++ + + + D F A L CS
Sbjct: 359 DAYKCFDSLLLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSENITTDEYAFSAALRSCS 418
Query: 101 HSGLV 105
L+
Sbjct: 419 DLALL 423
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 99.0 bits (245), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 98/194 (50%), Gaps = 41/194 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + T++S+CA L +L LG++I ++ G+ D+++GSA I++Y CG
Sbjct: 171 PDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVV 230
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
WN +I G A + Y E+A++++ + +K +GVTF+++L C+H+GLV
Sbjct: 231 FFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLV 290
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F SM D + P+ C+ M + + V+WG L+
Sbjct: 291 EEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELVRSMRMEPNSVIWGALLG 350
Query: 142 SCQVHSNVRLAKKA 155
C++H N+++A+ A
Sbjct: 351 GCKLHRNLKIAQVA 364
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 64/182 (35%), Gaps = 79/182 (43%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT F F++++ +C+ +S L G + I K G+ + +FV +A ++ Y N G
Sbjct: 6 VSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEAR 65
Query: 55 ------------------------------------------VTWNEMIHGY-------- 64
+WN MI GY
Sbjct: 66 RVFDEMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVES 125
Query: 65 -----------------------AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++N+ +A++++ ++ +G+ D VT I++ C+H
Sbjct: 126 AELLFSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAH 185
Query: 102 SG 103
G
Sbjct: 186 LG 187
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 99.0 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + ++VL +CA + ++ LGR++ G +++V +A + +Y CG
Sbjct: 216 VQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAW 275
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+WN MI +A + +A++L+ + +GVK DG+TFV ++ C+H
Sbjct: 276 QVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHG 335
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV F+SME + +KP+ C+ MP + D V+WG
Sbjct: 336 GLVNEGKLFFDSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGA 395
Query: 139 LVSSCQVHSNVRLAKKA 155
L+ +C H NV LA+ A
Sbjct: 396 LLGACSFHGNVELAELA 412
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 99.0 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + ++VL +CA + ++ LGR++ G +++V +A + +Y CG
Sbjct: 216 VQPNELTVSSVLPACAAVGAMELGRKVEEYARGKGLLRNVYVANALLEMYSKCGSIRQAW 275
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+WN MI +A + +A++L+ + +GVK DG+TFV ++ C+H
Sbjct: 276 QVFQGIGRQQDLCSWNSMIMAFAVHGLWREALALFYKLRMAGVKPDGITFVGVILACTHG 335
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV F+SME + +KP+ C+ MP + D V+WG
Sbjct: 336 GLVNEGKLFFDSMEAEFSLKPRIEHYGCMVDLLGRAGLLIESYSLIASMPVEPDAVIWGA 395
Query: 139 LVSSCQVHSNVRLAKKA 155
L+ +C H NV LA+ A
Sbjct: 396 LLGACSFHGNVELAELA 412
>gi|225216963|gb|ACN85255.1| EMB2261 putative [Oryza officinalis]
Length = 622
Score = 98.6 bits (244), Expect = 7e-19, Method: Composition-based stats.
Identities = 55/192 (28%), Positives = 96/192 (50%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ TVL +CA LSS+ G++I R ++ G D+ V SA +++Y CG
Sbjct: 341 YSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYAYSVFEA 400
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+TWN MI G+A+N + E+AI+L+ ++ G + D ++F+ +L CSH+G+V
Sbjct: 401 STVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQG 460
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
FNSM D+ + P C++ P+++D +W ++ +
Sbjct: 461 RNYFNSMCKDYGIAPGIEHYNCMVDLLSRVELLEEAEDLINKSPFRNDSSLWAAILGASA 520
Query: 145 VHSNVRLAKKAA 156
HSN +A++ A
Sbjct: 521 THSNPDVAERVA 532
Score = 40.0 bits (92), Expect = 0.31, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 54/115 (46%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P + + +CA L G + ++ G+G+D V S+ +++Y +
Sbjct: 135 VSPNAHALSAAVKACAVLRDRKAGACLHGSVLVRGFGDDDVVLSSLVDMYGHVAAPGDAR 194
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKD-IIASGVKHDGVTFVAILT 97
G+ + +I + N++ E+A+ ++ ++ +GV+ DG TF +++T
Sbjct: 195 KVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMT 249
>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
protein [Oryza sativa Japonica Group]
gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 751
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +V+SSCA L+SL G Q + G I V +A + +Y CG
Sbjct: 375 IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAH 434
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W ++ GYA+ ++ I L++ ++A+G+K DGVTF+ +L+ CS +G
Sbjct: 435 RLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAG 494
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV + F+SM+ DH + P C+ MP+ D W L
Sbjct: 495 LVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATL 554
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC++ N+ + K AA
Sbjct: 555 LSSCRLRGNMEIGKWAA 571
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q+ F ++L++C L++L G+QI I + Y +++FVGSA +++Y C
Sbjct: 278 QYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFR 337
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W MI GY +N E+A+ + ++ G+K D T ++++ C++
Sbjct: 338 RMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCAN 391
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 21/133 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT+ + ++ + LS LG + ++++ G+G FVGS +++Y G
Sbjct: 142 VRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDAR 201
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V +N +I G + +E A L++ + V D +T+ ++T + +G
Sbjct: 202 RVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLM----VDRDSITWTTMVTGLTQNG 257
Query: 104 LVYAEVEIFNSME 116
L +++F M
Sbjct: 258 LQLEALDVFRRMR 270
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P + VLS+C++L L +G+ + GY ++FVG+A I++Y CGV
Sbjct: 150 VVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKAL 209
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN +I+ A + + A+SL++ + +G + DGVTFV IL+ C+H G
Sbjct: 210 DVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMG 269
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F SM D+ + P+ C+ MP + D+V+W L
Sbjct: 270 LVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAAL 329
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C+ + NV +A+ A
Sbjct: 330 LGACRXYKNVEMAELA 345
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 24/115 (20%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRI----------VKDGYGND--------IFVGSAPINI 49
+ ++S +L + R++ R+ V GY N+ +F N+
Sbjct: 59 WNVIVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNV 118
Query: 50 YCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSG 103
Y +WN +I GY N ++A+ +K ++ G V + T VA+L+ CS G
Sbjct: 119 Y-----SWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLG 168
>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
Length = 815
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V Q F VL + A L+S+ LG+Q+ + +++ G+ N ++ G A +++Y NC
Sbjct: 439 VSADQATFACVLKASANLASILLGKQLHSCVIRSGFMN-VYSGCALLDMYANCASIKDAI 497
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN ++ YA+N + + ++++I SG + D V+F+ ILT CSH
Sbjct: 498 KTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCR 557
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----------CL-------------MPYKDDLVVWGDL 139
LV ++ FN M + + PK C MP++ D +VW +
Sbjct: 558 LVEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSV 617
Query: 140 VSSCQVHSNVRLAKKAA 156
++SC++H N LA+KAA
Sbjct: 618 LNSCRIHKNYALARKAA 634
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
FPF T+LS A L +GRQ+ ++V D V ++ +++Y CG
Sbjct: 343 FPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLR 402
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V W MI + E + L+ ++ + V D TF +L ++
Sbjct: 403 LSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASAN 455
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P+ F F V+S+ L G+QI +VK + ++FVG+A ++ Y
Sbjct: 239 PSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFY------------ 286
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116
++++ V + L+ ++ + DGV++ I+T + G V +++F ++
Sbjct: 287 --SKHDCVNEVRKLFNEM----PELDGVSYNVIITAYAWVGKVKESIDLFQELQ 334
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 98.6 bits (244), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 41/189 (21%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
++ LS+CA L +++ G++I I+K DIF SA I++Y CG
Sbjct: 549 SSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPD 608
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I Y + V++++S + G K D VTF+A+++ C+H+GLV +++
Sbjct: 609 KNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQL 668
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F M ++ + P+ C+ MP+K D +WG L+ +C+VH
Sbjct: 669 FQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHR 728
Query: 148 NVRLAKKAA 156
NV LA A+
Sbjct: 729 NVELADIAS 737
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 66/128 (51%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +VL +CA +S+L LG++I ++++ Y +V SA +++Y CG
Sbjct: 440 IKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSH 499
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI +++N ++A+ L++ + G+K++ VT + L+ C+
Sbjct: 500 YIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLP 559
Query: 104 LVYAEVEI 111
+Y EI
Sbjct: 560 AIYYGKEI 567
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 41/181 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P V+ SCA L ++ LGR + G +D++VGSA I +Y + G
Sbjct: 139 PDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDA 198
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN M+ GY + V A+ L++++ SG + + T L+ C+ +
Sbjct: 199 FDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADL 258
Query: 106 YAEVEIFN-----SMEHDHEV---------KPKC---------LMPYKDDLVVWGDLVSS 142
+ V++ + +E + V K +C L+P +DDLV W ++S
Sbjct: 259 LSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLP-RDDLVTWNGMISG 317
Query: 143 C 143
C
Sbjct: 318 C 318
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++L + L+ L G+++ I+++ D F+ SA ++IY C
Sbjct: 341 PDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNL 400
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V + +I GY N E+A+ +++ ++ +K + VT ++L C+
Sbjct: 401 YDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACA 455
>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 94/196 (47%), Gaps = 40/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q T++LS+C L ++ LG Q I K G+ +FVG++ I +Y CG
Sbjct: 683 IKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFC 742
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+TWN ++ G A+N ++AI +++ + G+ D ++F+ +L CSH+GL
Sbjct: 743 VFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGL 802
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLV 140
V FNSM + + P C+ MP K D V+W L+
Sbjct: 803 VDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALL 862
Query: 141 SSCQVHSNVRLAKKAA 156
+C++H NV L ++ A
Sbjct: 863 GACRIHRNVELGQRVA 878
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 48/151 (31%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ FT+ LS+CA + + +GR I + +K G + +V + I++Y CG
Sbjct: 553 PSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHV 612
Query: 55 ---------VTWNEMIHGYAEN--------------------------EYV-----EQAI 74
V+WN +I G +EN YV E A+
Sbjct: 613 FRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVAL 672
Query: 75 SLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
L+ D++A G+K + +T ++L+ C + G +
Sbjct: 673 DLFLDMLARGIKPNQLTVTSLLSACGNLGAI 703
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 21/130 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q F VLS+ L L L + +K GY D+ VGSA +N Y G
Sbjct: 359 PDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHF 418
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+W MI +A+ ++ AI LY+ + V T A++T + G +
Sbjct: 419 FETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV----ATKTAMMTAYAQVGRI 474
Query: 106 YAEVEIFNSM 115
IF+ +
Sbjct: 475 QKARLIFDEI 484
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+WN MI+GY++N V++A L+ + ++ T+ +LT + G + E+F S
Sbjct: 203 VSWNSMINGYSQNGKVDEARLLFDAFVGKNIR----TWTILLTGYAKEGRIEEAREVFES 258
Query: 115 MEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
M + ++V W ++S + +++ A+K
Sbjct: 259 MT-------------ERNVVSWNAMISGYVQNGDLKNARK 285
>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
Length = 742
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +V+SSCA L+SL G Q + G I V +A + +Y CG
Sbjct: 375 IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAH 434
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W ++ GYA+ ++ I L++ ++A+G+K DGVTF+ +L+ CS +G
Sbjct: 435 RLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAG 494
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV + F+SM+ DH + P C+ MP+ D W L
Sbjct: 495 LVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATL 554
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC++ N+ + K AA
Sbjct: 555 LSSCRLRGNMEIGKWAA 571
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 61/114 (53%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q+ F ++L++C L++L G+QI I + Y +++FVGSA +++Y C
Sbjct: 278 QYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFR 337
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W MI GY +N E+A+ + ++ G+K D T ++++ C++
Sbjct: 338 RMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCAN 391
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 21/133 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT+ + ++ + LS LG + ++++ G+G FVGS +++Y G
Sbjct: 142 VRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDAR 201
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V +N +I G + +E A L++ + V D +T+ ++T + +G
Sbjct: 202 RVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLM----VDRDSITWTTMVTGLTQNG 257
Query: 104 LVYAEVEIFNSME 116
L +++F M
Sbjct: 258 LQLEALDVFRRMR 270
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F VLS+C++L +L +GR + + + K ++FVG+A IN+Y CG
Sbjct: 274 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 333
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+T+N MI G + N QAI L++ +I ++ VTFV +L CSH G
Sbjct: 334 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGG 393
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +IF+SM D+ V+P+ C+ M D ++ G L
Sbjct: 394 LVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTL 453
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N+ L ++ A
Sbjct: 454 LSACKMHKNLELGEQVA 470
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/150 (18%), Positives = 53/150 (35%), Gaps = 47/150 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + ++L +C +L GR++ +R +K G ++ V + +Y CG
Sbjct: 143 ILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDAR 202
Query: 55 -----------------------------------------VTWNEMIHGYAENEYVEQA 73
V W MI G+ NE + +A
Sbjct: 203 RVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRA 262
Query: 74 ISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ ++ + V+ + T V +L+ CS G
Sbjct: 263 LEAFRGMQGENVRPNEFTIVCVLSACSQLG 292
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
+ P++F ++L++ A+L +L G I I K+ + ++ V ++ I++YC CG
Sbjct: 253 IKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAF 312
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI G A N +AI L+ + S ++ D VTFV +LT C++SG
Sbjct: 313 QVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSG 372
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV E F+ M ++++P C+ MP D ++W L
Sbjct: 373 LVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSL 432
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+ H NV LAK+AA
Sbjct: 433 LSACRKHGNVELAKRAA 449
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 65/140 (46%), Gaps = 22/140 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + + +V + A+L G Q+ R++K G D F+ + I +Y NCG
Sbjct: 121 VQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMW 180
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI G A+ V+++ L+ ++ + V++ ++++ +G
Sbjct: 181 KAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPL----RNTVSWNSMISGYVRNG 236
Query: 104 LVYAEVEIFNSMEHDHEVKP 123
+ +++F M+ + +KP
Sbjct: 237 RLREALDLFGQMQ-EERIKP 255
>gi|51091970|dbj|BAD35499.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
Length = 665
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ TVL +CA LSS+ G++I R ++ D+ V SA +++Y CG
Sbjct: 395 YSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVDLYAKCGAVDYAYSVFEA 454
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+TWN MI G+A+N + E+AI+L+ ++ G + D ++F+ +L CSH+G+V
Sbjct: 455 STVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQG 514
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
FNSM D+ + P C++ P+++D +W D++ +
Sbjct: 515 RNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKSPFRNDSSLWADILGASA 574
Query: 145 VHSNVRLAKKAA 156
HSN +A++ +
Sbjct: 575 THSNPDVAERVS 586
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P + + +CA L G + ++ G+G+D V S+ +++Y +
Sbjct: 189 VSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDAR 248
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKD-IIASGVKHDGVTFVAILTPCSHS 102
G+ + +I + N++ E+A+ ++ ++ +GV+ DG TF +++T +S
Sbjct: 249 KVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNS 308
>gi|225216917|gb|ACN85213.1| EMB2261 putative [Oryza glaberrima]
Length = 615
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ TVL +CA LSS+ G++I R ++ D+ V SA +++Y CG
Sbjct: 345 YSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVDLYAKCGAVDYAYSVFEA 404
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+TWN MI G+A+N + E+AI+L+ ++ G + D ++F+ +L CSH+G+V
Sbjct: 405 STVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQG 464
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
FNSM D+ + P C++ P+++D +W D++ +
Sbjct: 465 RNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKSPFRNDSSLWADILGASA 524
Query: 145 VHSNVRLAKKAA 156
HSN +A++ +
Sbjct: 525 THSNPDVAERVS 536
Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P + + +CA L G + ++ G+G+D V S+ +++Y +
Sbjct: 139 VSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDSVVLSSLVDMYGHVAAPGDAR 198
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKD-IIASGVKHDGVTFVAILTPCSHS 102
G+ + +I + N++ E+A+ ++ ++ +GV+ DG TF +++T +S
Sbjct: 199 KVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNS 258
>gi|225216882|gb|ACN85180.1| EMB2261 putative [Oryza nivara]
gi|225216899|gb|ACN85196.1| EMB2261 putative [Oryza rufipogon]
Length = 615
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ TVL +CA LSS+ G++I R ++ D+ V SA +++Y CG
Sbjct: 345 YSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVDLYAKCGAVDYAYSVFEA 404
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+TWN MI G+A+N + E+AI+L+ ++ G + D ++F+ +L CSH+G+V
Sbjct: 405 STVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQG 464
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
FNSM D+ + P C++ P+++D +W D++ +
Sbjct: 465 RNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKSPFRNDSSLWADILGASA 524
Query: 145 VHSNVRLAKKAA 156
HSN +A++ +
Sbjct: 525 THSNPDVAERVS 536
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P + + +CA L G + ++ G+G+D V S+ +++Y +
Sbjct: 139 VSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDAR 198
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKD-IIASGVKHDGVTFVAILTPCSHS 102
G+ + +I + N++ E+A+ ++ ++ +GV+ DG TF +++T +S
Sbjct: 199 KVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNS 258
>gi|125597837|gb|EAZ37617.1| hypothetical protein OsJ_21952 [Oryza sativa Japonica Group]
Length = 615
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ TVL +CA LSS+ G++I R ++ D+ V SA +++Y CG
Sbjct: 345 YSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVDLYAKCGAVDYAYSVFEA 404
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+TWN MI G+A+N + E+AI+L+ ++ G + D ++F+ +L CSH+G+V
Sbjct: 405 STVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQG 464
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
FNSM D+ + P C++ P+++D +W D++ +
Sbjct: 465 RNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKSPFRNDSSLWADILGASA 524
Query: 145 VHSNVRLAKKAA 156
HSN +A++ +
Sbjct: 525 THSNPDVAERVS 536
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P + + +CA L G + ++ G+G+D V S+ +++Y +
Sbjct: 139 VSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDAR 198
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKD-IIASGVKHDGVTFVAILTPCSHS 102
G+ + +I + N++ E+A+ ++ ++ +GV+ DG TF +++T +S
Sbjct: 199 KVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNS 258
>gi|125556039|gb|EAZ01645.1| hypothetical protein OsI_23682 [Oryza sativa Indica Group]
Length = 615
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ TVL +CA LSS+ G++I R ++ D+ V SA +++Y CG
Sbjct: 345 YSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVDLYAKCGAVDYAYSVFEA 404
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+TWN MI G+A+N + E+AI+L+ ++ G + D ++F+ +L CSH+G+V
Sbjct: 405 STVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQG 464
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
FNSM D+ + P C++ P+++D +W D++ +
Sbjct: 465 RNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKSPFRNDSSLWADILGASA 524
Query: 145 VHSNVRLAKKAA 156
HSN +A++ +
Sbjct: 525 THSNPDVAERVS 536
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P + + +CA L G + ++ G+G+D V S+ +++Y +
Sbjct: 139 VSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDAR 198
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKD-IIASGVKHDGVTFVAILTPCSHS 102
G+ + +I + N++ E+A+ ++ ++ +GV+ DG TF +++T +S
Sbjct: 199 KVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNS 258
>gi|115468918|ref|NP_001058058.1| Os06g0611200 [Oryza sativa Japonica Group]
gi|113596098|dbj|BAF19972.1| Os06g0611200 [Oryza sativa Japonica Group]
Length = 615
Score = 98.6 bits (244), Expect = 8e-19, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ TVL +CA LSS+ G++I R ++ D+ V SA +++Y CG
Sbjct: 345 YSLGTVLRACAGLSSVKPGKEIHCRFLRMAGWRDVVVESALVDLYAKCGAVDYAYSVFEA 404
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+TWN MI G+A+N + E+AI+L+ ++ G + D ++F+ +L CSH+G+V
Sbjct: 405 STVRNTITWNAMIGGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQG 464
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
FNSM D+ + P C++ P+++D +W D++ +
Sbjct: 465 RNYFNSMCKDYGIAPGIEHYNCMVDLFSRVELLEEAEDLINKSPFRNDSSLWADILGASA 524
Query: 145 VHSNVRLAKKAA 156
HSN +A++ +
Sbjct: 525 THSNPDVAERVS 536
Score = 40.8 bits (94), Expect = 0.20, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P + + +CA L G + ++ G+G+D V S+ +++Y +
Sbjct: 139 VSPNAHALSAAVKACAVLRDRNAGACLHGSVLVRGFGDDGVVLSSLVDMYGHVAAPGDAR 198
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKD-IIASGVKHDGVTFVAILTPCSHS 102
G+ + +I + N++ E+A+ ++ ++ +GV+ DG TF +++T +S
Sbjct: 199 KVFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTALGNS 258
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F VLS+C++L +L +GR + + + K ++FVG+A IN+Y CG
Sbjct: 231 VRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQ 290
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+T+N MI G + N QAI L++ +I ++ VTFV +L CSH G
Sbjct: 291 TVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGG 350
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +IF+SM D+ V+P+ C+ M D ++ G L
Sbjct: 351 LVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTL 410
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N+ L ++ A
Sbjct: 411 LSACKMHKNLELGEQVA 427
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 21/124 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + ++L +C +L GR++ +R +K G ++ V + +Y CG
Sbjct: 126 ILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDAR 185
Query: 55 ---------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V W MI G+ NE + +A+ ++ + V+ + T V +L+ C
Sbjct: 186 RVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSAC 245
Query: 100 SHSG 103
S G
Sbjct: 246 SQLG 249
>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Vitis vinifera]
Length = 545
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ +++L +C +++L G++I + G D++V SA +++Y CG
Sbjct: 297 PSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKIL 356
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN +I GYA + Y +AI L+ + S K D +TF A+L CSH+G+V
Sbjct: 357 FYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMV 416
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+F M+ + ++P+ C+ MP + D VWG L+
Sbjct: 417 ELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLG 476
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H N+ LA+ AA
Sbjct: 477 ACRNHGNIELAEVAA 491
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 26/156 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P QF ++L +C LS G + T I+K+ + +D ++ SA I +Y CG
Sbjct: 126 PNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRV 185
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V N M+ GYA++ +V +A++L + + +GVK + V++ ++ S G
Sbjct: 186 FDWIVDKDLVVMNAMVSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDK 245
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
E+F M + V+P D+V W ++S
Sbjct: 246 SMVSEVFRLMTANG-VEP--------DVVSWTSVIS 272
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 98.6 bits (244), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + +L++CA SL R+I T + K G+ +D VG+A ++ Y CG
Sbjct: 528 PDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIV 587
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +I G A++ + A+ L++ + GVK D VTFV++L+ CSH+GL+
Sbjct: 588 FEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLL 647
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F SM D + P C+ MP++ + +WG L+
Sbjct: 648 EEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLG 707
Query: 142 SCQVHSNVRLAKKAA 156
+C++H NV +A++AA
Sbjct: 708 ACRIHGNVPVAERAA 722
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +T++L++C+ ++L GR+I ++V+ G D VG+ +N+Y CG
Sbjct: 425 VEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDAR 484
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V +N MI GYA + ++A+ L+ + G+K D VT++ +L C++SG
Sbjct: 485 QVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSG 544
Query: 104 LVYAEVEI 111
+ EI
Sbjct: 545 SLEWAREI 552
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 66/117 (56%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + + +L++C ++L G++I +R+ K G+ +DI V +A I++Y CG
Sbjct: 324 VMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDAR 383
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++W MI G A++ + +A+++Y+++ +GV+ + VT+ +IL CS
Sbjct: 384 LVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACS 440
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + + +VL++ + ++L G+ + +RI+ G+ +D VG+A + +Y CG
Sbjct: 223 VVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCR 282
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN MI G AE Y E+A +Y + GV + +T+V +L C +S
Sbjct: 283 QVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSA 342
Query: 104 LVYAEVEI 111
++ EI
Sbjct: 343 ALHWGKEI 350
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
+ +L C ++ L GRQ+ I++ D + +A IN+Y CG
Sbjct: 26 YMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLS 85
Query: 56 -------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+WN M+ GY + Y+E+A+ L + + G+ D T ++ L+ C G +
Sbjct: 86 YMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWG 145
Query: 109 VEI-FNSME 116
EI F +M+
Sbjct: 146 REIHFQAMQ 154
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + LSSC +L GR+I + ++ G D+ V + +N+Y CG
Sbjct: 124 PDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREV 183
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W I GYA+ E A +++ + GV + +T++++L S
Sbjct: 184 FDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFS 238
>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Glycine max]
Length = 693
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F VL++CA ++ LG+++ ++ GY F SA +++Y CG
Sbjct: 317 VRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVAR 376
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I GYA+N ++A+ ++ ++ SG K D VT+V +L+ C+H+G
Sbjct: 377 RVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAG 436
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +E F+S++ H + C+ MP K D +W L
Sbjct: 437 LVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASL 496
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C++H N+ LAK+AA
Sbjct: 497 LGGCRIHGNLELAKRAA 513
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 21 LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHG 63
L LG++I +++ D V SA +++Y CG V+W MIH
Sbjct: 236 LRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHR 295
Query: 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117
E+ E+ L++D++ SGV+ + TF +L C+ + E+ M H
Sbjct: 296 CFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMH 349
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 17/95 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ ++T++++C + +L LGR++ + +F+ + +++Y CG
Sbjct: 85 PSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQML 144
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDI 80
+WN MI GYA+ +EQA L+ ++
Sbjct: 145 FDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEM 179
>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
Length = 751
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +V+SSCA L+SL G Q + G I V +A + +Y CG
Sbjct: 375 IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAH 434
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W ++ GYA+ ++ I L++ ++ +G+K DGVTF+ +L+ CS +G
Sbjct: 435 RLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAG 494
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV + F+SM+ DH++ P C+ MP+ D W L
Sbjct: 495 LVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATL 554
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC++ N+ + K AA
Sbjct: 555 LSSCRLRGNMEIGKWAA 571
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q+ F ++L++C L++ G+QI I + Y +++FVGSA +++Y C
Sbjct: 278 QYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFR 337
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W MI GY +N E+A+ + ++ G+K D T ++++ C++
Sbjct: 338 RMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCAN 391
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 21/133 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT+ + ++ + LS LG + ++++ G+G FVGS +++Y G
Sbjct: 142 VRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDAR 201
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V +N +I G + +E A L++ + V D +T+ ++T + +G
Sbjct: 202 RVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLM----VDRDSITWTTMVTGLTQNG 257
Query: 104 LVYAEVEIFNSME 116
L +++F M
Sbjct: 258 LQLEALDVFRRMR 270
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q +V+S+CA + +L + I T K+G+G + + +A I++Y CG
Sbjct: 345 IVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAR 404
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W+ MI+ +A + + AI+L+ + ++ +GVTF+ +L CSH+G
Sbjct: 405 EVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAG 464
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F+SM ++H + P+ C+ MP+ ++++WG L
Sbjct: 465 LVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSL 524
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+CQ H + L + AA
Sbjct: 525 MSACQNHGEIELGEFAA 541
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 18/117 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG--------- 54
+F F +L + +KLS+L LG +I K G+ + D F+ SA I +Y CG
Sbjct: 115 RFSFPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLF 174
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI GY++N + + + LY+++ SG + D + +L+ C+H+G
Sbjct: 175 DKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAG 231
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 61/155 (39%), Gaps = 49/155 (31%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TVLS+CA +L G+ I I +G+ + ++ +N+Y NCG
Sbjct: 215 PDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREV 274
Query: 55 ----------------------------------------VTWNEMIHGYAENEYVEQAI 74
V W+ MI GYAE+ +A+
Sbjct: 275 YDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEAL 334
Query: 75 SLYKDIIASGVKHDGVTFVAILTPCSHSG-LVYAE 108
L+ ++ + D +T +++++ C++ G LV A+
Sbjct: 335 QLFNEMQRRRIVPDQITMLSVISACANVGALVQAK 369
>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
Length = 824
Score = 98.2 bits (243), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ Q + +VL +C++ +L G ++ R++K+G D+FVG++ ++Y CG
Sbjct: 448 ISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDAL 507
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I + + + E+A+ L+K+++ GVK D +TFV +L+ CSHSG
Sbjct: 508 SLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSG 567
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F M+ D+ + P C+ MP + D +WG L
Sbjct: 568 LVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGAL 627
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+VH NV L K A+
Sbjct: 628 LSACRVHGNVDLGKIAS 644
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 24/118 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P F +VL +C ++ G +I +K G+ D++V ++ I++YC G
Sbjct: 151 PDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARIL 207
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI GY ++ ++A++L + A D VT V++L+ C+ +G
Sbjct: 208 FDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRAM----DSVTVVSLLSACTEAG 261
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++LS+C + G I + +K G +++FV + I++Y G
Sbjct: 252 SLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVR 311
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
++WN +I Y NE +AI L++++ S ++ D +T +++ + S G + A
Sbjct: 312 DLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRA 366
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 20/123 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG----- 54
+ P ++ S ++L + R + ++ G + DI +G+A + +Y G
Sbjct: 344 IQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSA 403
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASG--VKHDGVTFVAILTPCS 100
++WN +I GYA+N + +AI +Y + G + + T+V++L CS
Sbjct: 404 RAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACS 463
Query: 101 HSG 103
+G
Sbjct: 464 QAG 466
>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F F ++LS A + ++ G QI R++K GY ++ + +A I++Y CG
Sbjct: 124 SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 183
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++W MI G+A++ + +A+ ++ ++ +G K + +T+VA+L+ CSH G++
Sbjct: 184 NEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 243
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+ FNSM +H + P+ C+ MP D +VW L+ +
Sbjct: 244 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGA 303
Query: 143 CQVHSNVRLAKKAA 156
C+VH N L + AA
Sbjct: 304 CRVHGNTELGRHAA 317
>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 870
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P T +L + A LSSL GR++ ++ GY D FV +A I++Y CG
Sbjct: 494 LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLAR 553
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W M+ GY + AI+L++ + SG+ D +F AIL CSHSG
Sbjct: 554 RLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSG 613
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L F++M +H+++P+ C+ MP + D +W L
Sbjct: 614 LRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSL 673
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C++H NV+LA++ A
Sbjct: 674 LRGCRIHRNVKLAEEVA 690
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + + VL A L S+ G + + K G+G+ VG+A + Y
Sbjct: 192 VRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAI 251
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI G N ++AI L+ + G + D T +++L C+
Sbjct: 252 LVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELH 311
Query: 104 LVY 106
L++
Sbjct: 312 LLF 314
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 30/152 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F T+ L + A L G+ + +++G + V +A + +Y CG
Sbjct: 396 PDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLI 455
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +I GY+ N +A SL+ +++ ++ + VT IL P + S
Sbjct: 456 FDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCIL-PAAAS--- 510
Query: 106 YAEVEIFNSMEHDHEVKPKCLMP--YKDDLVV 135
+S+E E+ L +DD V
Sbjct: 511 ------LSSLERGREMHAYALRRGYLEDDFVA 536
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 17/96 (17%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+VL +CA+L LFLGR + VK G+ + + + +++Y NC
Sbjct: 302 SVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQK 361
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD 88
V+W MI Y ++ L++++ G + D
Sbjct: 362 NVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPD 397
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 94/196 (47%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +VLS+CA L L +G + I + G DI+VG++ I++YC CG
Sbjct: 222 VKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKAL 281
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G A N + A+ L+ ++ GV+ TFV IL C+H+G
Sbjct: 282 EVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAG 341
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +E F SME H + P C+ MP D+VVW L
Sbjct: 342 LVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRIL 401
Query: 140 VSSCQVHSNVRLAKKA 155
+S+C++H NV LA+ A
Sbjct: 402 LSACKLHGNVVLAEIA 417
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------ 54
P V++ +++ + I +K G+ + +FV +A I++Y CG
Sbjct: 26 PAALVVALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGM 85
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I GY++ ++ + L+ + A+ +K D VT V I+ CSH G
Sbjct: 86 LDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLG 139
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
++ +C+ L ++ I ++ D+++G+ I++Y G
Sbjct: 131 IILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLFDNMPKRD 190
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI GY++ A+ L+++++A+ VK D VT ++L+ C+H G
Sbjct: 191 VISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLG 240
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 94/196 (47%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +VLS+CA L L +G + I + G DI+VG++ I++YC CG
Sbjct: 345 VKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKAL 404
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G A N + A+ L+ ++ GV+ TFV IL C+H+G
Sbjct: 405 EVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAG 464
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +E F SME H + P C+ MP D+VVW L
Sbjct: 465 LVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRIL 524
Query: 140 VSSCQVHSNVRLAKKA 155
+S+C++H NV LA+ A
Sbjct: 525 LSACKLHGNVVLAEIA 540
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%), Gaps = 17/110 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+ +CA++S + GR+I +K G+ + +FV +A I++Y CG
Sbjct: 122 LFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRD 181
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I GY++ ++ + L+ + A+ +K D VT V I+ CSH G
Sbjct: 182 LVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLG 231
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI GY++ A+ L+++++A+ VK D VT ++L+ C+H G
Sbjct: 315 ISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLG 363
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + FT+ L+SC+ + L G+ I ++V GY D+++ SA +++Y CG
Sbjct: 395 IKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDAR 454
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W MI G A++ +A+ ++ + G+K D VTF ++L+ C+H G
Sbjct: 455 LVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVG 514
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV + F SM D+ +KP C MP++ VWG L
Sbjct: 515 LVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGAL 574
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++HS+V ++AA
Sbjct: 575 LSACRIHSDVERGERAA 591
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 17/134 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +T++L C +L G+++ I++ GYG +I+V +A I +YC CG
Sbjct: 294 VAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEAR 353
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW M+ GYA+ + ++AI L++ + G+K D +TF + LT CS
Sbjct: 354 KLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPA 413
Query: 104 LVYAEVEIFNSMEH 117
+ I + H
Sbjct: 414 FLQEGKSIHQQLVH 427
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F +L CA+L SL GR++ I+K G + ++ + +++Y CG
Sbjct: 99 FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIR 158
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI + +A Y+ + +G K D VTFV++L ++ L+
Sbjct: 159 DRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELL 213
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F ++L++ L +G+++ I K G + VG++ + +Y CG
Sbjct: 195 PDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVI 254
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTW +I GYA+ V+ A+ L + + + V + +T+ +IL C+
Sbjct: 255 FDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCT 309
>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Glycine max]
Length = 747
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +V+SSCA L+SL G Q R + G + I V +A + +Y CG
Sbjct: 371 IEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSH 430
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W ++ GYA+ + + L++ ++A G K D VTF+ +L+ CS +G
Sbjct: 431 RLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAG 490
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV +IF SM +H + P C+ MP+ D + W L
Sbjct: 491 LVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASL 550
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC+ H N+ + K AA
Sbjct: 551 LSSCRFHRNMEIGKWAA 567
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 65/114 (57%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q+ F +VL++C + +L G+Q+ I++ Y ++IFVGSA +++YC C
Sbjct: 274 QYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFR 333
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W M+ GY +N Y E+A+ ++ D+ +G++ D T ++++ C++
Sbjct: 334 KMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCAN 387
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/130 (21%), Positives = 58/130 (44%), Gaps = 21/130 (16%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ +T+L +K + LG Q+ +VK G+ + +FVGS +++Y G
Sbjct: 141 NRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAF 200
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V +N +I G +E + L+ D+ + D +++ A++ + +GL
Sbjct: 201 DEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDM----QEKDSISWTAMIAGFTQNGLDR 256
Query: 107 AEVEIFNSME 116
+++F M
Sbjct: 257 EAIDLFREMR 266
>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F F ++LS A + ++ G QI R++K GY ++ + +A I++Y CG
Sbjct: 436 SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 495
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++W MI G+A++ + +A+ ++ ++ +G K + +T+VA+L+ CSH G++
Sbjct: 496 NEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 555
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+ FNSM +H + P+ C+ MP D +VW L+ +
Sbjct: 556 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGA 615
Query: 143 CQVHSNVRLAKKAA 156
C+VH N L + AA
Sbjct: 616 CRVHGNTELGRHAA 629
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F F++VL +C LS + G Q+ + VK G + VG++ I++Y G
Sbjct: 332 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 391
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N ++ GYA+N E+A L+ +I +G+ TF ++L+ + G
Sbjct: 392 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 451
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 68/132 (51%), Gaps = 21/132 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F +++VLS+C +L L LG+Q+ +R+++ G D+ VG + +++Y C
Sbjct: 229 PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 288
Query: 55 ------------VTWNEMIHGYAEN-EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W +I Y ++ E ++AI L+ +I+ ++ + +F ++L C +
Sbjct: 289 RKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN 348
Query: 102 SGLVYAEVEIFN 113
Y ++++
Sbjct: 349 LSDPYTGEQVYS 360
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCG------ 54
YP ++ F V+ +C+ + ++G I +VK GY D+ VG I+++
Sbjct: 125 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSA 184
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
VTW MI +A+ AI L+ D+ SG D T+ ++L+ C+
Sbjct: 185 YKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTEL 244
Query: 103 GLV 105
GL+
Sbjct: 245 GLL 247
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++ +L SC + + LG+ + ++++ G D V + I++Y CG
Sbjct: 24 PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 83
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+W+ M+ +A N QAI + D++ G + F A++ CS++
Sbjct: 84 FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 143
Query: 105 VY 106
+
Sbjct: 144 AW 145
>gi|302790359|ref|XP_002976947.1| hypothetical protein SELMODRAFT_50342 [Selaginella moellendorffii]
gi|300155425|gb|EFJ22057.1| hypothetical protein SELMODRAFT_50342 [Selaginella moellendorffii]
Length = 280
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F L +C+ +L G+ + + I++ GY +D+ VG+A +N+Y CG
Sbjct: 78 PDKASFVAALDACSNSLALKQGKLLHSGILEHGYESDLVVGTALVNMYGKCGSLDSALEF 137
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TWN M+ +AEN + +A +Y+++ +GV D VTF+++L SH+GLV
Sbjct: 138 FQGMKKRNFITWNAMMGSFAENGHGMRACGVYREMEQAGVLSDQVTFLSVLFASSHAGLV 197
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+E F+S++ D+ ++P +C+ MP++ D W L+
Sbjct: 198 TDALEFFHSLQDDYGLRPGLEHYRCIVDLLGRLGQLEDSEEVLSYMPFEPDAAAWMALLG 257
Query: 142 SCQVHSNVRLAKKAA 156
SC++H +V + A
Sbjct: 258 SCKIHGDVGRGGRVA 272
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 55 VTWNEMIHGYAENEYV-EQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113
V+WN ++ YA+N + + A+ L+ + SG+K D +FVA L CS+S L + ++ +
Sbjct: 45 VSWNSLMAAYAQNGHCKDAALELFWKLSHSGMKPDKASFVAALDACSNS-LALKQGKLLH 103
Query: 114 S--MEHDHE 120
S +EH +E
Sbjct: 104 SGILEHGYE 112
>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
Length = 730
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F+++LS C+ + +L G QI + +K G+ +D+ V SA +N+Y CG
Sbjct: 351 PDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKA 410
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW MI GY+++ ++AI L++++ +GV+ + +TFV++L+ CS++GLV
Sbjct: 411 FLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLV 470
Query: 106 YAEVEIFNSMEHDHEVKP-----KCLMP-------------------YKDDLVVWGDLVS 141
F+ M+ ++ ++P C++ ++ + +W LV+
Sbjct: 471 EEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVA 530
Query: 142 SCQVHSNVRLAKKAA 156
C+ H N+ LA AA
Sbjct: 531 GCRSHGNMELAFYAA 545
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 28/128 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F T+V+S C L LG+Q+ K G ++ V ++ + +Y G
Sbjct: 237 VMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAM 296
Query: 55 -----------VTWNEMIHGYAE-----------NEYVEQAISLYKDIIASGVKHDGVTF 92
+TWN MI GYA+ QA+++++D+ S +K D TF
Sbjct: 297 RLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTF 356
Query: 93 VAILTPCS 100
+IL+ CS
Sbjct: 357 SSILSVCS 364
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP+ + L++C + LG+Q+ +K G + +G++ ++Y G
Sbjct: 136 YPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALR 195
Query: 55 ----------VTWNEMIHGYAENEY-VEQAISLYKDIIASGVKHDGVTFVAILTPC 99
+TW MI AE+E VE +SL+ D++ GV + T ++++ C
Sbjct: 196 AFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLC 251
>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
[Vitis vinifera]
gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 95/190 (50%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
TT+L CA++++L G++I IVK D V ++ +++Y CG
Sbjct: 282 LTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQ 341
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+WN +I GYA N + +A+ ++++I SG DG+TF+A+L+ CSH+GL
Sbjct: 342 GKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCR 401
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
+F M+ D+ + P CL MP+K +WG L++SC++H
Sbjct: 402 LFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLH 461
Query: 147 SNVRLAKKAA 156
NV LA+ A
Sbjct: 462 GNVPLAEAVA 471
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
F F+ L +C+ L L GR + +++K D V +A + +Y G
Sbjct: 178 NFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDEALRVFD 237
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I G + + V +AI ++ + G+ VT IL C+
Sbjct: 238 GMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILPVCAR 291
>gi|302143669|emb|CBI22530.3| unnamed protein product [Vitis vinifera]
Length = 539
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F F ++LS A + ++ G QI R++K GY ++ + +A I++Y CG
Sbjct: 206 SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 265
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++W MI G+A++ + +A+ ++ ++ +G K + +T+VA+L+ CSH G++
Sbjct: 266 NEMEDRNVISWTSMITGFAKHGFATRALEMFHQMLETGTKPNEITYVAVLSACSHVGMIS 325
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+ FNSM +H + P+ C+ MP D +VW L+ +
Sbjct: 326 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGA 385
Query: 143 CQVHSNVRLAKKAA 156
C VH N L + AA
Sbjct: 386 CHVHGNTELGRHAA 399
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T++LS+CA+L +L G+ + I +I+V +A I++Y CG
Sbjct: 404 PNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQL 463
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN MI GY + Y ++A+ L+ +++ G + VTF+++L CSH+GLV
Sbjct: 464 FDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLV 523
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
EIF++M + + ++P C+ MP + VWG L+
Sbjct: 524 REGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLG 583
Query: 142 SCQVHSNVRLAKKAA 156
+C +H + LA+ A+
Sbjct: 584 ACMIHKDTNLARVAS 598
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 17/91 (18%)
Query: 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYA 65
LG + V DG+ +++FV SA +++YC V WN MI G
Sbjct: 121 LGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLV 180
Query: 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
N + ++ ++KD++A GV+ D T +L
Sbjct: 181 RNCCYDDSVQVFKDMVAQGVRLDSTTVATVL 211
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN MI GYA++ E AISL+++++ + + VT +IL+ C+ G
Sbjct: 374 WNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLG 420
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F F ++LS A + ++ G QI R++K GY ++ + +A I++Y CG
Sbjct: 256 SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 315
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++W MI G+A++ + +A+ ++ ++ +G K + +T+VA+L+ CSH G++
Sbjct: 316 NEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 375
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+ FNSM +H + P+ C+ MP D +VW L+ +
Sbjct: 376 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGA 435
Query: 143 CQVHSNVRLAKKAA 156
C+VH N L + AA
Sbjct: 436 CRVHGNTELGRHAA 449
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 69/132 (52%), Gaps = 21/132 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F +++VLS+C +L L LG+Q+ +R+++ G D+ VG + +++Y C
Sbjct: 49 PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 108
Query: 55 ------------VTWNEMIHGYAEN-EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W +I YA++ E ++AI L+ +I+ ++ + +F ++L C +
Sbjct: 109 RKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN 168
Query: 102 SGLVYAEVEIFN 113
Y ++++
Sbjct: 169 LSDPYTGEQVYS 180
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F F++VL +C LS + G Q+ + VK G + VG++ I++Y G
Sbjct: 152 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 211
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N ++ GYA+N E+A L+ +I +G+ TF ++L+ + G
Sbjct: 212 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 271
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F F ++LS A + ++ G QI R++K GY ++ + +A I++Y CG
Sbjct: 261 SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 320
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++W MI G+A++ + +A+ ++ ++ +G K + +T+VA+L+ CSH G++
Sbjct: 321 NEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 380
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+ FNSM +H + P+ C+ MP D +VW L+ +
Sbjct: 381 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGA 440
Query: 143 CQVHSNVRLAKKAA 156
C+VH N L + AA
Sbjct: 441 CRVHGNTELGRHAA 454
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 69/132 (52%), Gaps = 21/132 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F +++VLS+C +L L LG+Q+ +R+++ G D+ VG + +++Y C
Sbjct: 54 PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 113
Query: 55 ------------VTWNEMIHGYAEN-EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W +I YA++ E ++AI L+ +I+ ++ + +F ++L C +
Sbjct: 114 RKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN 173
Query: 102 SGLVYAEVEIFN 113
Y ++++
Sbjct: 174 LSDPYTGEQVYS 185
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F F++VL +C LS + G Q+ + VK G + VG++ I++Y G
Sbjct: 157 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 216
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N ++ GYA+N E+A L+ +I +G+ TF ++L+ + G
Sbjct: 217 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 276
>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
Length = 770
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F+++LS C+ + +L G QI + +K G+ +D+ V SA +N+Y CG
Sbjct: 391 PDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKA 450
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW MI GY+++ ++AI L++++ +GV+ + +TFV++L+ CS++GLV
Sbjct: 451 FLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLV 510
Query: 106 YAEVEIFNSMEHDHEVKP-----KCLMP-------------------YKDDLVVWGDLVS 141
F+ M+ ++ ++P C++ ++ + +W LV+
Sbjct: 511 EEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVA 570
Query: 142 SCQVHSNVRLAKKAA 156
C+ H N+ LA AA
Sbjct: 571 GCRSHGNMELAFYAA 585
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 28/128 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F T+V+S C L LG+Q+ K G ++ V ++ + +Y G
Sbjct: 277 VMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAM 336
Query: 55 -----------VTWNEMIHGYAE-----------NEYVEQAISLYKDIIASGVKHDGVTF 92
+TWN MI GYA+ QA+++++D+ S +K D TF
Sbjct: 337 RLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTF 396
Query: 93 VAILTPCS 100
+IL+ CS
Sbjct: 397 SSILSVCS 404
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP+ + L++C + LG+Q+ +K G + +G++ ++Y G
Sbjct: 176 YPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALR 235
Query: 55 ----------VTWNEMIHGYAENEY-VEQAISLYKDIIASGVKHDGVTFVAILTPC 99
+TW MI AE+E VE +SL+ D++ GV + T ++++ C
Sbjct: 236 AFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLC 291
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +L C + SL R + + K G D+FV ++ +N Y C
Sbjct: 81 YVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMP 140
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
VTW ++ GY N + ++ +++ G T A L C
Sbjct: 141 ERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNAC 189
>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F F ++LS A + ++ G QI R++K GY ++ + +A I++Y CG
Sbjct: 454 SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 513
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++W MI G+A++ + +A+ ++ ++ +G K + +T+VA+L+ CSH G++
Sbjct: 514 NEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 573
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+ FNSM +H + P+ C+ MP D +VW L+ +
Sbjct: 574 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGA 633
Query: 143 CQVHSNVRLAKKAA 156
C+VH N L + AA
Sbjct: 634 CRVHGNTELGRHAA 647
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F F++VL +C LS + G Q+ + VK G + VG++ I++Y G
Sbjct: 350 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 409
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N ++ GYA+N E+A L+ +I +G+ TF ++L+ + G
Sbjct: 410 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 469
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 68/132 (51%), Gaps = 21/132 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F +++VLS+C +L L LG+Q+ +R+++ G D+ VG + +++Y C
Sbjct: 247 PDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 306
Query: 55 ------------VTWNEMIHGYAEN-EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W +I Y ++ E ++AI L+ +I+ ++ + +F ++L C +
Sbjct: 307 RKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGN 366
Query: 102 SGLVYAEVEIFN 113
Y ++++
Sbjct: 367 LSDPYTGEQVYS 378
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCG------ 54
YP ++ F V+ +C+ + ++G I +VK GY D+ VG I+++
Sbjct: 143 YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSA 202
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
VTW MI +A+ AI L+ D+ SG D T+ ++L+ C+
Sbjct: 203 YKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTEL 262
Query: 103 GLV 105
GL+
Sbjct: 263 GLL 265
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 18/122 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++ +L SC + + LG+ + ++++ G D V + I++Y CG
Sbjct: 42 PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 101
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+W+ M+ +A N QAI + D++ G + F A++ CS++
Sbjct: 102 FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 161
Query: 105 VY 106
+
Sbjct: 162 AW 163
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 94/179 (52%), Gaps = 28/179 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----VTWNEMI 61
F F + +S+ A ++++ +G+QI I K GY ++ V +A I +Y CG ++WN MI
Sbjct: 641 FTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDDISWNSMI 700
Query: 62 HGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEV 121
GY+++ +A+ L++D+ V + VTFV +L+ CSH GLV + F SM H +
Sbjct: 701 TGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNL 760
Query: 122 KPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSNVRLAKKAA 156
PK C+ MP + D +VW L+S+C VH N+ + + AA
Sbjct: 761 VPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAA 819
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 26/158 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P QF + ++L +C L + LG QI T+++K G+ +++V S I++Y G
Sbjct: 434 IVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHAL 493
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY +++ +A++L+K++ G+K D + F + ++ C
Sbjct: 494 KIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISAC---- 549
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
A ++ + H CL Y DDL + LVS
Sbjct: 550 ---AGIQALDQGRQIH--AQSCLSGYSDDLSIGNALVS 582
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 62/111 (55%), Gaps = 17/111 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F + +S+CA + +L GRQI + GY +D+ +G+A +++Y CG
Sbjct: 542 FASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIY 601
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN ++ G+A++ Y E+A++++ + +G++ + TF + ++ ++
Sbjct: 602 AKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAAN 652
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 17/110 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
VLS+C K+ G+Q+ ++K G+ ++ +V +A + +Y G
Sbjct: 257 VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRD 316
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N +I G A+ Y+ +A++L+K + K D VT ++L+ C+ G
Sbjct: 317 RVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVG 366
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--VTWNEMIHGYAE 66
++LS+CA + +L G+Q + +K G +DI V + +++Y C T +E Y +
Sbjct: 356 ASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQ 415
Query: 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ + ++ ++ + G+ + T+ +IL C+ G
Sbjct: 416 LDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLG 452
>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 805
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 42/187 (22%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F +++ SCA L SL GR I + + G+ DI +A +++Y CG
Sbjct: 435 FVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGS 494
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEV 109
V WN MI GY + + QA+ +Y +I G+K + TF+++L+ CSHS LV +
Sbjct: 495 ISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGI 554
Query: 110 EIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQV 145
+FNSME DH ++P CL MP++ V L+S C+
Sbjct: 555 SLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRT 614
Query: 146 HSNVRLA 152
H N+ L
Sbjct: 615 HKNINLG 621
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 21/118 (17%)
Query: 6 FPFTTVLS---SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
F TT++S C++ +SL G+ IL + +++ + +A +++Y CG
Sbjct: 330 FDLTTIVSLLQGCSQTASLATGK-ILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFV 388
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TW M+ G A+N + E A+ L+ + G+ + VTFV+++ C+H G
Sbjct: 389 FNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLG 446
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P+ T+++ +C + +L LG+ + ++ G GNDI V ++ +++Y G
Sbjct: 227 IKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESAR 286
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN MI G N V ++ L+ ++ S D T V++L CS +
Sbjct: 287 WVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQT 345
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
T L +CA +G +I++ V+ G + FVGS+ I+ G
Sbjct: 134 TFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPN 193
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I GY + + A L+ ++ SG+K +T +++ C G
Sbjct: 194 KDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIG 245
>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
Length = 770
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 101/195 (51%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F+++LS C+ + +L G QI + +K G+ +D+ V SA +N+Y CG
Sbjct: 391 PDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKA 450
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW MI GY+++ ++AI L++++ +GV+ + +TFV++L+ CS++GLV
Sbjct: 451 FLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLV 510
Query: 106 YAEVEIFNSMEHDHEVKP-----KCLMP-------------------YKDDLVVWGDLVS 141
F+ M+ ++ ++P C++ ++ + +W LV+
Sbjct: 511 EEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVA 570
Query: 142 SCQVHSNVRLAKKAA 156
C+ H N+ LA AA
Sbjct: 571 GCRSHGNMELAFYAA 585
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 28/128 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F T+V+S C L LG+Q+ K G ++ V ++ + +Y G
Sbjct: 277 VMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAM 336
Query: 55 -----------VTWNEMIHGYAE-----------NEYVEQAISLYKDIIASGVKHDGVTF 92
+TWN MI GYA+ QA+++++D+ S +K D TF
Sbjct: 337 RLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTF 396
Query: 93 VAILTPCS 100
+IL+ CS
Sbjct: 397 SSILSVCS 404
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +L C ++ SL R + + K G G D+FV ++ +N Y CG
Sbjct: 81 YVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMP 140
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
VTW ++ GY N + ++ +++ G T A L C
Sbjct: 141 ERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNAC 189
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP+ + L++C + LG+Q+ +K G + +G++ ++Y G
Sbjct: 176 YPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALR 235
Query: 55 ----------VTWNEMIHGYAENEY-VEQAISLYKDIIASGVKHDGVTFVAILTPC 99
+TW MI AE+E VE +SL+ D++ GV + T ++++ C
Sbjct: 236 AFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLC 291
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 41/189 (21%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
+ LS+CA L +++ G++I +K DIF SA I++Y CG
Sbjct: 549 SAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPD 608
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I Y + V++++SL + G K D VTF+A+++ C+H+GLV V++
Sbjct: 609 KNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQL 668
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F M + + P+ C+ MP+K D +WG L+ +C+VH
Sbjct: 669 FQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHR 728
Query: 148 NVRLAKKAA 156
NV LA A+
Sbjct: 729 NVELADIAS 737
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +VL CA +++L LG+QI ++++ Y +V SA +++Y CG
Sbjct: 440 IKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSH 499
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI +++N ++A+ L++ + G+K++ +T A L+ C+
Sbjct: 500 YIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLP 559
Query: 104 LVYAEVEI 111
+Y EI
Sbjct: 560 AIYYGKEI 567
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 43/182 (23%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P V+ SCA L ++ LGR + G ND++VGSA + +Y + G
Sbjct: 139 PDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDA 198
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS----- 100
V WN M+ G + V+ A+ L++++ ASG + + T L+ C+
Sbjct: 199 FDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADL 258
Query: 101 ------HSGLVY----AEVEIFNSMEHDHEVKPKC---------LMPYKDDLVVWGDLVS 141
HS V EV + N++ + K +C LMP +DDLV W ++S
Sbjct: 259 LSGAQLHSLAVKCGLEPEVAVANTLLAMY-AKCQCLDDAWRLFELMP-QDDLVTWNGMIS 316
Query: 142 SC 143
C
Sbjct: 317 GC 318
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++L + L+ L G+++ IV++ D+F+ SA ++IY C
Sbjct: 341 PDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNL 400
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V + MI GY N E+A+ +++ ++ +K + VT ++L C+
Sbjct: 401 YDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCA 455
>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Cucumis sativus]
Length = 868
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + TVL +CA L+++ LG+QI +++K +D+++ S +++Y CG
Sbjct: 557 VEPDNFTYATVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSL 616
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI G+A + E+A+ L++ ++ +K + TFV++L CSH G
Sbjct: 617 LMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVG 676
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+ F M + ++P+ C+ MP++ D ++W L
Sbjct: 677 NAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTL 736
Query: 140 VSSCQVHSNVRLAKKAA 156
+S C++ NV +A+KAA
Sbjct: 737 LSICKIQGNVEVAEKAA 753
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F + +VL +CA + G ++ RI+K G G +FVGSA +++Y CG
Sbjct: 458 PDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKI 517
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I G++ + E + + ++ GV+ D T+ +L C++ V
Sbjct: 518 HYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATV 577
Query: 106 YAEVEIFNSM 115
+I M
Sbjct: 578 GLGKQIHAQM 587
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+Q + +V SCA LS+ LG Q+ +K +G+D+ VG+A +++Y C
Sbjct: 257 SQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLF 316
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++N MI GYA NE QA L+ + + D V+ L+ +
Sbjct: 317 SLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAA 370
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 6 FPFTTV---LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
F TT+ L C+ L LG QI V+ G+ D+ GSA +++Y C
Sbjct: 155 FDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDV 214
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++W+ I G +N+ + + + L+K++ G+ T+ ++ C+
Sbjct: 215 FSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCA 269
>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
Length = 657
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F+ ++ CA+L+SL +Q +V+ G+G DI +A +++Y G
Sbjct: 334 FTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDM 393
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
++WN +I GY + +A+ +++ ++ G+ + VTF+A+L+ CS+SGL
Sbjct: 394 MPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRG 453
Query: 109 VEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDLVSSCQ 144
EIF SM DH++KP+ + P+K + +W L+++C+
Sbjct: 454 WEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACR 513
Query: 145 VHSNVRLAKKAA 156
VH N L K AA
Sbjct: 514 VHKNFELGKFAA 525
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 28/126 (22%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F T++ + A L +F GRQ+ + +K G G D+FV A I++Y CG
Sbjct: 235 FVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMP 294
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC----------- 99
V WN +I GYA + Y E+A+S+Y ++ SGVK D TF I+ C
Sbjct: 295 EKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQ 354
Query: 100 SHSGLV 105
+H+GLV
Sbjct: 355 AHAGLV 360
>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
Length = 704
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F+ ++ CA+L+SL +Q +V+ G+G DI +A +++Y G
Sbjct: 334 FTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDM 393
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
++WN +I GY + +A+ +++ ++ G+ + VTF+A+L+ CS+SGL
Sbjct: 394 MPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRG 453
Query: 109 VEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDLVSSCQ 144
EIF SM DH++KP+ + P+K + +W L+++C+
Sbjct: 454 WEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACR 513
Query: 145 VHSNVRLAKKAA 156
VH N L K AA
Sbjct: 514 VHKNFELGKFAA 525
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 28/126 (22%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F T++ + A L +F GRQ+ + +K G G D+FV A I++Y CG
Sbjct: 235 FVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMP 294
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC----------- 99
V WN +I GYA + Y E+A+S+Y ++ SGVK D TF I+ C
Sbjct: 295 EKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQ 354
Query: 100 SHSGLV 105
+H+GLV
Sbjct: 355 AHAGLV 360
>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q + ++L + + + +L G +I +++K+ +D+FVG+ I++Y CG
Sbjct: 192 IIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAI 251
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI Y + E+A+ L++++ A VK D +TFV++L+ CSHSG
Sbjct: 252 SLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSG 311
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV FN ME ++ +KP C+ MP + D WG L
Sbjct: 312 LVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGAL 371
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C++H N+ L K A+
Sbjct: 372 LNACRIHGNIELGKHAS 388
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 20/110 (18%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV--------------- 55
V+ +C L G++I ++K G+ D+FV ++ +++Y G+
Sbjct: 3 VVKACG---DLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARD 59
Query: 56 --TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI GY +N +A+ + ++ GVK D +T ++L C+ G
Sbjct: 60 RGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVG 109
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 27/125 (21%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
+VL CA++ + G+ I ++K G ++FV +A IN+Y G
Sbjct: 99 ASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLIK 158
Query: 55 --VTWNEMIHGYAENEYVEQAISLY------KDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V+WN +I GYA+N +AI +Y ++II + T+V+IL SH G +
Sbjct: 159 DVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIP-----NQGTWVSILPAYSHVGALQ 213
Query: 107 AEVEI 111
+ I
Sbjct: 214 QGMRI 218
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P +L +CA L++L G++I I+++G+ D V +A +++Y CG
Sbjct: 321 LFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLAR 380
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY + Y +AI+ + ++ SG++ D V+F++IL CSHSG
Sbjct: 381 LLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSG 440
Query: 104 LVYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDL 139
L+ FN M ++ ++PK +MP + D +WG L
Sbjct: 441 LLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGAL 500
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C+++ +V+LA+K A
Sbjct: 501 LCGCRIYHDVKLAEKVA 517
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI---LTPC-----SHSGLVY 106
++WN MI GY N E+ + L++ ++ G+ D T V++ L C S SG +
Sbjct: 217 ISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLN 276
Query: 107 AEVEIFNSM 115
+ +++F +M
Sbjct: 277 SAIQVFETM 285
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +VL CA L S+ GR+I + I + D +GS + +Y CG
Sbjct: 104 YCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVA 163
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH 87
WN +++GYA+ +++SL+K + G++
Sbjct: 164 NEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRR 200
>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 752
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F ++VLS C ++ L G+Q+ ++ G ++ V SA I++Y CG
Sbjct: 458 PNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALISMYSKCGSVEEASKI 517
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI+GYAE+ Y ++AI+L++ I + G+K D VTF+ +LT CSH+G+V
Sbjct: 518 FNGMKINNIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVTFIGVLTACSHAGMV 577
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F M +++++ P C+ MP D VVW L+
Sbjct: 578 DLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSMPCYTDDVVWSTLLR 637
Query: 142 SCQVHSNVRLAKKAA 156
SC+VH +V + A
Sbjct: 638 SCRVHGDVDRGRWTA 652
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 17/111 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F L + A S L G+ I T+ +K G+ FV + +Y CG
Sbjct: 261 FAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMK 320
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W +I Y + E A+ +K + S V + TF A+++ C++
Sbjct: 321 MPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACAN 371
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 17/122 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F V+S+CA L+ G QI +++ G + + V ++ + +Y G
Sbjct: 355 VSPNKYTFAAVISACANLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSAS 414
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W+ +I Y++ Y ++A + G K + ++L+ C
Sbjct: 415 LVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMA 474
Query: 104 LV 105
L+
Sbjct: 475 LL 476
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QF + L +C ++ G + VK G N +FV SA I++Y G
Sbjct: 157 QFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFK 216
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V+W +I G Y +A+ + ++ S V +D TF L + S L++
Sbjct: 217 KMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLH 275
>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic [Vitis vinifera]
Length = 704
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F+ ++ CA+L+SL +Q +V+ G+G DI +A +++Y G
Sbjct: 334 FTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDM 393
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
++WN +I GY + +A+ +++ ++ G+ + VTF+A+L+ CS+SGL
Sbjct: 394 MPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRG 453
Query: 109 VEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDLVSSCQ 144
EIF SM DH++KP+ + P+K + +W L+++C+
Sbjct: 454 WEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACR 513
Query: 145 VHSNVRLAKKAA 156
VH N L K AA
Sbjct: 514 VHKNFELGKFAA 525
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 28/126 (22%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F T++ + A L +F GRQ+ + +K G G D+FV A I++Y CG
Sbjct: 235 FVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMP 294
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC----------- 99
V WN +I GYA + Y E+A+S+Y ++ SGVK D TF I+ C
Sbjct: 295 EKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQ 354
Query: 100 SHSGLV 105
+H+GLV
Sbjct: 355 AHAGLV 360
>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
Length = 1321
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ +++L +C +++L G++I + G D++V SA +++Y CG
Sbjct: 1073 PSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKIL 1132
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN +I GYA + Y +AI L+ + S K D +TF A+L CSH+G+V
Sbjct: 1133 FYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMV 1192
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+F M+ + ++P+ C+ MP + D VWG L+
Sbjct: 1193 ELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLG 1252
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H N+ LA+ AA
Sbjct: 1253 ACRNHGNIELAEVAA 1267
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+F ++ + +C+ SL QI +R++K +++ V S+ I Y CG
Sbjct: 416 NEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVF 475
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V+WN +I Y++N +AI L + +I G K TF+ +L+ CSHSGLV
Sbjct: 476 TQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQ 535
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
E F SM D+ ++P+ C+ + K +W L+++
Sbjct: 536 EGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAA 595
Query: 143 CQVHSNVRLAKKAA 156
C+ +SN+++A+ A
Sbjct: 596 CRYNSNLQMAEYVA 609
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 29/139 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F F+ VL+SC + GR T+++K G + +FVG+A I++Y G
Sbjct: 311 IEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAE 370
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS-- 100
V+WN +I GY NE +E+A+ + ++ V + T+ I CS
Sbjct: 371 KQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSF 430
Query: 101 ---------HSGLVYAEVE 110
HS L+ + VE
Sbjct: 431 PSLATTVQIHSRLIKSNVE 449
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 26/156 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P QF ++L +C LS G + T I+K+ + +D ++ SA I +Y CG
Sbjct: 902 PNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRV 961
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V N M+ GYA++ +V +A+ L + + +GVK + V++ ++ S G
Sbjct: 962 FDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDK 1021
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
E+F M + V+P D+V W ++S
Sbjct: 1022 SMVSEVFRLMTANG-VEP--------DVVSWTSVIS 1048
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 57/114 (50%), Gaps = 17/114 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + ++T+L+ C +S++ G+Q+ +VK Y ++ VG+A + +Y CG
Sbjct: 212 PNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIV 271
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++W I+G+ ++ ++A+ + + SG++ + TF +L C
Sbjct: 272 FESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASC 325
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P + + LS C + + LGR+ +VK G G+D FV ++ I++Y CG
Sbjct: 110 FPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVR 169
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
T N +I YA N + QA ++ I G + + T+ +L C
Sbjct: 170 VYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVC 224
>gi|297746037|emb|CBI16093.3| unnamed protein product [Vitis vinifera]
Length = 702
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ +++L +C +++L G++I + G D++V SA +++Y CG
Sbjct: 454 PSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKIL 513
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN +I GYA + Y +AI L+ + S K D +TF A+L CSH+G+V
Sbjct: 514 FYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMV 573
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+F M+ + ++P+ C+ MP + D VWG L+
Sbjct: 574 ELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLG 633
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H N+ LA+ AA
Sbjct: 634 ACRNHGNIELAEVAA 648
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 57/114 (50%), Gaps = 17/114 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + ++T+L+ C +S++ G+Q+ +VK Y ++ VG+A + +Y CG
Sbjct: 212 PNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIV 271
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++W I+G+ ++ ++A+ + + SG++ + TF +L C
Sbjct: 272 FENLGQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASC 325
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P + + LS C + + LGR+ +VK G G+D FV ++ I++Y CG
Sbjct: 110 FPHRQYVFSALSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVR 169
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
T N +I YA N + QA ++ I G + + T+ +L C
Sbjct: 170 VYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVC 224
>gi|297740128|emb|CBI30310.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P VLSSCA L + GR++ RI G+G + F+ +A IN+Y CG
Sbjct: 256 IVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKAR 315
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W +I GY + E A+ L+ ++I+S DG FV++L+ CSH+G
Sbjct: 316 AIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAG 375
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L + F +ME D+ ++P C+ M + D VWG L
Sbjct: 376 LTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGAL 435
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C++H NV LA+ A
Sbjct: 436 LGACKIHRNVELAELA 451
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTW 57
CA L G + V+ G D+ VG+ + +Y CG +TW
Sbjct: 169 CAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITW 228
Query: 58 NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116
N MI GYA+N + LY+ + +G+ D VT V +L+ C+H G A E+ +E
Sbjct: 229 NAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIE 287
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 19/117 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P F F SCA LS G Q+ ++K G + FV ++ I++YC C
Sbjct: 54 PNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKV 113
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V +N +I GY+ N A+ L++ + GV + VT + ++ C+
Sbjct: 114 FDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCA 170
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 52 NCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
N +WN + A + ++A++LY ++ASG + TF C+ L A
Sbjct: 19 NTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLA---- 74
Query: 112 FNSMEHDHEVKPKC 125
S H H +K C
Sbjct: 75 -GSQLHGHVIKTGC 87
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 97.8 bits (242), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +VL +CA L++L GR I I++ G + + V SA + +Y CG
Sbjct: 283 PNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRV 342
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I Y + Y +AI ++++++A+G VTFV++L CSH GLV
Sbjct: 343 FDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLV 402
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+F SM DH +KP+ C+ M + VWG L+
Sbjct: 403 EEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLG 462
Query: 142 SCQVHSNVRLAKKAA 156
SC++H NV LA++A+
Sbjct: 463 SCRIHGNVELAERAS 477
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 23/123 (18%)
Query: 1 VYPTQFPFTTVLSSCA----KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-- 54
V +F +T VL +C L G++I + + GY + +++ + +++Y G
Sbjct: 174 VESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCV 233
Query: 55 ---------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH--DGVTFVAILT 97
V+W+ MI YA+N +A+ +++++ + VT V++L
Sbjct: 234 DYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVSVLQ 293
Query: 98 PCS 100
C+
Sbjct: 294 ACA 296
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+Q + ++ C SSL G ++ I+ +G D F+ + I +Y + G
Sbjct: 75 PSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
WN + + E+ + LY + GV+ D T+ +L C
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKAC 188
>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
chloroplastic-like [Glycine max]
Length = 691
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
F + V+ CA+L+SL +Q +V+ G+ DI +A ++ Y G
Sbjct: 320 HFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANTALVDFYSKWGRMEDARHVFN 379
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
++WN +I GY + ++A+ +++ ++ GV VTF+A+L+ CS+SGL
Sbjct: 380 RMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQR 439
Query: 108 EVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDLVSSC 143
EIF SM+ DH+VKP+ + P+K +W L+++C
Sbjct: 440 GWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAYALIRTAPFKPTANMWAALLTAC 499
Query: 144 QVHSNVRLAKKAA 156
++H N+ L K AA
Sbjct: 500 RMHKNLELGKLAA 512
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 17/111 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F T++ + A L + +G+QI + +K G G+D FV A I++Y CG
Sbjct: 222 FATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMP 281
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN +I YA + Y E+A+SLY ++ SG D T ++ C+
Sbjct: 282 EKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISIVIRICAR 332
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + FT +L++CA +L GR++ I + + D+ VG+ I++Y CG
Sbjct: 611 IKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAH 670
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+W MI GYA++ ++A+ L+ + GVK D +TFV L+ C+H+G
Sbjct: 671 QVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAG 730
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ + F SM+ + ++P+ C+ M + D VWG L
Sbjct: 731 LIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGAL 789
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +CQVH NV LA+KAA
Sbjct: 790 LGACQVHLNVELAEKAA 806
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F ++L++CA ++ GR++ I+K G+ D+FVG+A IN++ CG
Sbjct: 207 VKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDAT 266
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTW MI G A + +QA +L++ + GV+ D V FV++L C+H
Sbjct: 267 KVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNH 324
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 17/119 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F ++L +C+ S+L G+QI I++ GYG+D V +A +++Y CG
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAH 468
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V WN MI Y ++E + A++ ++ ++ G+K + TF +IL C S
Sbjct: 469 RVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSS 527
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 64/117 (54%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F ++L +C +L G+++ R+ + G+ +I+VG+A +++Y CG
Sbjct: 308 VQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDAL 367
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W MI G+A++ +++A + +I SG++ + VTF++IL CS
Sbjct: 368 EVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACS 424
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT----------- 56
++ +L C K +L G +I I K G DIF+ + IN+Y CG T
Sbjct: 113 YSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMR 172
Query: 57 ------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
WN ++ GY ++ E+A L++ ++ VK D TFV++L C+ + V E
Sbjct: 173 EKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRE 232
Query: 111 IFN 113
++N
Sbjct: 233 LYN 235
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P FT++L+ C SL LG+ + I+K G +D+ V +A ++++ NCG
Sbjct: 510 IKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAK 569
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I G+ ++ + A +K + SG+K D +TF +L C+
Sbjct: 570 NLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACA 626
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + FT +L++CA +L GR++ I + + D+ VG+ I++Y CG
Sbjct: 611 IKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAH 670
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+W MI GYA++ ++A+ L+ + GVK D +TFV L+ C+H+G
Sbjct: 671 QVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAG 730
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ + F SM+ + ++P+ C+ M + D VWG L
Sbjct: 731 LIEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGAL 789
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +CQVH NV LA+KAA
Sbjct: 790 LGACQVHLNVELAEKAA 806
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F ++L++CA ++ GR++ I+K G+ D+FVG+A IN++ CG
Sbjct: 207 VKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDAT 266
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTW MI G A + +QA +L++ + GV+ D V FV++L C+H
Sbjct: 267 KVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNH 324
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 17/119 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F ++L +C+ S+L G+QI I++ GYG+D V +A +++Y CG
Sbjct: 409 IEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAH 468
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V WN MI Y ++E + A++ ++ ++ G+K + TF +IL C S
Sbjct: 469 RVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSS 527
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 64/117 (54%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F ++L +C +L G+++ R+ + G+ +I+VG+A +++Y CG
Sbjct: 308 VQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDAL 367
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W MI G+A++ +++A + +I SG++ + VTF++IL CS
Sbjct: 368 EVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACS 424
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT----------- 56
++ +L C K +L G +I I K G DIF+ + IN+Y CG T
Sbjct: 113 YSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMR 172
Query: 57 ------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
WN ++ GY ++ E+A L++ ++ VK D TFV++L C+ + V E
Sbjct: 173 EKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRE 232
Query: 111 IFN 113
++N
Sbjct: 233 LYN 235
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P FT++L+ C SL LG+ + I+K G +D+ V +A ++++ NCG
Sbjct: 510 IKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAK 569
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I G+ ++ + A +K + SG+K D +TF +L C+
Sbjct: 570 NLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACA 626
>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Vitis vinifera]
Length = 629
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 93/196 (47%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P VLSSCA L + GR++ RI G+G + F+ +A IN+Y CG
Sbjct: 256 IVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKAR 315
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W +I GY + E A+ L+ ++I+S DG FV++L+ CSH+G
Sbjct: 316 AIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAG 375
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L + F +ME D+ ++P C+ M + D VWG L
Sbjct: 376 LTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGAL 435
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C++H NV LA+ A
Sbjct: 436 LGACKIHRNVELAELA 451
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 17/119 (14%)
Query: 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTW 57
CA L G + V+ G D+ VG+ + +Y CG +TW
Sbjct: 169 CAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITW 228
Query: 58 NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116
N MI GYA+N + LY+ + +G+ D VT V +L+ C+H G A E+ +E
Sbjct: 229 NAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIE 287
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 19/117 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P F F SCA LS G Q+ ++K G + FV ++ I++YC C
Sbjct: 54 PNAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKV 113
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V +N +I GY+ N A+ L++ + GV + VT + ++ C+
Sbjct: 114 FDENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCA 170
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 52 NCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
N +WN + A + ++A++LY ++ASG + TF C+ L A
Sbjct: 19 NTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLA---- 74
Query: 112 FNSMEHDHEVKPKC 125
S H H +K C
Sbjct: 75 -GSQLHGHVIKTGC 87
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 40/194 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P VLS+CA++ +L G++I ++ G D F+ +A +++Y CG
Sbjct: 507 PNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQ 566
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
+WN ++ GYAE A L++ ++ S V + VTF++IL CS SG+V
Sbjct: 567 FFSVDHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVA 626
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+E FNSM++ + + P C+ MP K D VWG L++S
Sbjct: 627 EGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNS 686
Query: 143 CQVHSNVRLAKKAA 156
C++H +V L + AA
Sbjct: 687 CRIHHHVELGELAA 700
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F VL +C + +L GR+I +++ G+ +D+ V +A I +Y CG
Sbjct: 203 VKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTAR 262
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GY EN + + L+ +I V D +T +++T C G
Sbjct: 263 LVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLG 322
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T+V+++C L LGRQI +++ +G D + ++ I +Y + G
Sbjct: 304 VDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAE 363
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W MI GY ++A+ YK + A G+ D +T +L+ CS
Sbjct: 364 TVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACS 420
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 20 SLFLGRQILTRIVKDGYGND---IFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISL 76
SL LG +L+ V+ G D +F N++ +WN ++ GYA+ ++A+ L
Sbjct: 140 SLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLF-----SWNVLVGGYAKAGLFDEALDL 194
Query: 77 YKDIIASGVKHDGVTFVAILTPC 99
Y ++ GVK D TF +L C
Sbjct: 195 YHRMLWVGVKPDVYTFPCVLRTC 217
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 23/139 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + VLS+C+ L +L +G + + G + V ++ I++Y C
Sbjct: 405 IMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKAL 464
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G N +A+ ++++I +K + VT V +L+ C+ G
Sbjct: 465 EIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRR-LKPNSVTLVCVLSACARIG 523
Query: 104 LVYAEVEIFNSMEHDHEVK 122
+ EI H H ++
Sbjct: 524 ALTCGKEI-----HAHALR 537
>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 684
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 98/199 (49%), Gaps = 43/199 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT F ++VLS+CA+L L LGR + VK ++IFVGSA +++Y CG
Sbjct: 306 VEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAE 365
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDII--ASGVKHDGVTFVAILTPCSH 101
VTWN MI GYA ++ A+ L++++ + G++ VT ++IL+ CS
Sbjct: 366 QVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSR 425
Query: 102 SGLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWG 137
G V ++IF SM ++ ++P C+ M + + VWG
Sbjct: 426 VGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWG 485
Query: 138 DLVSSCQVHSNVRLAKKAA 156
L+ +C++H L K AA
Sbjct: 486 ALLGACRMHGKTELGKIAA 504
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 60/157 (38%), Gaps = 26/157 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F V + A + G+QI +K G D+FVG + ++YC G
Sbjct: 104 VQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDAC 163
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN I ++ AI +K+ + + + +TF A L C
Sbjct: 164 NMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNAC---- 219
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140
++ N H +C YK+D+ V L+
Sbjct: 220 ---VDMVRLNLGRQLHAFIVRC--GYKEDVSVANGLI 251
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 18/93 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F L++C + L LGRQ+ IV+ GY D+ V + I+ Y CG
Sbjct: 207 PNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMV 266
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLY 77
V+W M+ +N E+A ++
Sbjct: 267 FNRIGNRKNVVSWCSMLAALVQNHEEERACMVF 299
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 99/194 (51%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ +T+L +CA +L +G + +++K GY N++ + ++ I++YC CG
Sbjct: 293 NEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAF 352
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
+W MI GY + + +A+ ++ +I +GVK + +TF+++L CSH+G +
Sbjct: 353 DGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLE 412
Query: 107 AEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSS 142
FN+M H++ V+P C+ M + D V+WG L+++
Sbjct: 413 EGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAA 472
Query: 143 CQVHSNVRLAKKAA 156
C++H +V LA+ +A
Sbjct: 473 CRIHKDVELAEISA 486
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 26/127 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F + SC+ L L G+Q + + G+ +D+FV SA I++Y CG
Sbjct: 78 IKPNRSTFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNAR 137
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIAS---------GVKHDGVTFVA 94
VTW +I GY +N+ +A+ ++K+ + G D V ++
Sbjct: 138 VLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMIS 197
Query: 95 ILTPCSH 101
+L+ CS
Sbjct: 198 VLSACSR 204
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 18/112 (16%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+VLS+C+++S+ + + +K G + V + ++ Y CG
Sbjct: 197 SVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEK 256
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDII-ASGVKHDGVTFVAILTPCSHSG 103
V+WN MI YA+N A ++ ++ A G K++ VT +L C+H G
Sbjct: 257 DVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEG 308
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
VYP Q +VLS+CA+L+ + G+QI +VK G + + V ++ + +Y CG
Sbjct: 138 VYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDAN 197
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W +I GYA+N + ++ Y +IA+G K D +TF+ +L CSH+G
Sbjct: 198 RAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNG 257
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L+ + F +M+ + +KP C+ M D VVW L
Sbjct: 258 LLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKAL 317
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+VH + L + AA
Sbjct: 318 LAACRVHKELELGEMAA 334
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
++ +VL+S A + + + I+K G+ V +A I++Y G
Sbjct: 41 EYTLPSVLNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFS 100
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W ++ GY+ N E+AI L+ + SGV D + ++L+ C+
Sbjct: 101 KMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAE 154
>gi|225216998|gb|ACN85287.1| EMB2261 putative [Oryza australiensis]
Length = 626
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ TVL +CA LSS+ G++I R ++ G D+ V SA +++Y CG
Sbjct: 345 YSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYACSVFEA 404
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+TWN MI G+A+N + E+AI+L+ ++ G + D ++F+ +L CSH+G+V
Sbjct: 405 STVRNTITWNAMISGFAQNGHGERAINLFNRMVREGPRPDYISFIGVLFACSHTGMVEQG 464
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
F+SM D+ + P C++ P+++D +W ++ +
Sbjct: 465 RNYFDSMCKDYGIAPGIEHYNCMVDLLSRVELLEEAEDLINESPFRNDSSLWAAILGASA 524
Query: 145 VHSNVRLAKKAA 156
HSN +A++ A
Sbjct: 525 THSNPDVAERVA 536
Score = 38.9 bits (89), Expect = 0.76, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P + + +CA L G + ++ G G+D V S+ +++Y +
Sbjct: 139 VSPNAHALSAAVKACAVLRDRKAGACLHGSVLVRGMGDDDVVLSSLVDMYGHVAAPGDAR 198
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILT 97
G+ + +I + N++ E+A+ ++ ++ +GV+ DG TF +++T
Sbjct: 199 KAFEEMRGPDGICYTSLISAFVRNDWFEEAVRWFRSMLTMNGVRPDGCTFGSMMT 253
>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g56690, mitochondrial; Flags: Precursor
gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P+ ++LS CA L+SL GRQ+ +V+ + +D++V S + +Y CG
Sbjct: 327 VRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAK 386
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN +I GYA + E+A+ ++ ++ +SG + VT +AILT CS++G
Sbjct: 387 LVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAG 446
Query: 104 LVYAEVEIFNSMEHDHEVKP-------------------KCL-----MPYKDDLVVWGDL 139
+ +EIF SME V P K + M K D VWG L
Sbjct: 447 KLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGAL 506
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ HS + LA+ AA
Sbjct: 507 LGACKTHSRLDLAEVAA 523
>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 758
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F ++VLS C+++ ++ G QI + +K G+ +D+ V ++ I++Y CG
Sbjct: 379 PDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKA 438
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ W MI G++++ +QA+ +++D+ +GV+ + VTFV +L+ CSH+G+V
Sbjct: 439 FLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMV 498
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+ F M+ +++KP +C+ M Y+ +W + ++
Sbjct: 499 SQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIA 558
Query: 142 SCQVHSNVRLAKKAA 156
C+ H N+ L AA
Sbjct: 559 GCKSHGNLELGFYAA 573
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 28/129 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F T+ LS C ++ SL LG Q+ + +K GY +++ V ++ + +Y G
Sbjct: 265 IKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAH 324
Query: 55 -----------VTWNEMIHGYAENEYV-----------EQAISLYKDIIASGVKHDGVTF 92
VTWN MI G+A+ + +A+ L+ + SG+K D T
Sbjct: 325 RLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFSKLNLSGMKPDLFTL 384
Query: 93 VAILTPCSH 101
++L+ CS
Sbjct: 385 SSVLSVCSR 393
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP+ + + VL +C+ L SL LG Q I+K D VGSA ++Y CG
Sbjct: 165 YPSVYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALK 224
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++W + A+N + + L+ ++IA +K + T + L+ C
Sbjct: 225 TFSRIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQC 279
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 31 IVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQA 73
++K G ++ FV S +N+Y CG V W ++ G+ +N + A
Sbjct: 93 VMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQPKHA 152
Query: 74 ISLYKDIIASGVKHDGVTFVAILTPCS 100
I ++++++ +G T A+L CS
Sbjct: 153 IHVFQEMLYAGSYPSVYTLSAVLHACS 179
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T+ +S+CA++ SL R + + + Y +D+F+ SA I+++ CG
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECAR 378
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ MI GY + +AISLY+ + GV + VTF+ +L C+HSG
Sbjct: 379 SVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSG 438
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V FN M DH++ P+ C+ MP + + VWG L
Sbjct: 439 MVREGWWFFNRMA-DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGAL 497
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+ H +V L K AA
Sbjct: 498 LSACKKHRHVELGKYAA 514
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F +L +C LS L +GR + ++ + G+ D+FV + I +Y C
Sbjct: 115 VSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCAR 174
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+W ++ YA+N +A+ ++ + VK D V V++L
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLN 230
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +VL++ L L GR I ++K G + + + +Y CG
Sbjct: 218 VKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAK 277
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN MI GYA+N + + AI L+ ++I V+ D ++ + ++ C+ G
Sbjct: 278 ILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVG 337
>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
Length = 695
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 17/138 (12%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT------ 56
P + ++V+SSCAKL+SL+ G+ + + G +D+ V SA +++YC CGVT
Sbjct: 320 PDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTI 379
Query: 57 -----------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
WN MI GYA N +A+SLY++++ +K D VTFV +L+ C H+GLV
Sbjct: 380 FSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLV 439
Query: 106 YAEVEIFNSMEHDHEVKP 123
E F SM H ++P
Sbjct: 440 EEGKEYFCSMSDQHGLEP 457
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT++ +VL++C +L L G+QI RI+ G ++FV +A ++Y CG
Sbjct: 153 PTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRL 212
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN MI GY +N E+ I L+ ++ S +K D VT ++L +G +
Sbjct: 213 FDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYI 272
Query: 106 YAEVEIFNSMEHDHEV 121
++F + EV
Sbjct: 273 DEARKVFGEIREKDEV 288
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V W MI G A+N E A+ L+ +++ + DG T ++++ C+ +Y
Sbjct: 288 VCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLY-------- 339
Query: 115 MEHDHEVKPKC-LMPYKDDLVVWGDLV 140
H V K LM DDL+V LV
Sbjct: 340 --HGQVVHGKAFLMGVNDDLLVSSALV 364
>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
Length = 855
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + T+ CA + + LG QI+ VK G ++ V +A I +Y CG
Sbjct: 490 VTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQ 549
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY+++ +QA + D+++ G K D +++VA+L+ CSHSG
Sbjct: 550 KLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSG 609
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F+ M H + P C+ MP K VWG L
Sbjct: 610 LVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGAL 669
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N LA+ AA
Sbjct: 670 LSACKIHGNDELAELAA 686
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 21/136 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QF T++S C L LGRQ+ + +K G+ I V ++ I++Y CG
Sbjct: 361 QFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFS 420
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+W MI Y++ + +A + + + +T+ A+L G
Sbjct: 421 SMSERDIVSWTSMITAYSQIGNIIKAREFFDGM----ATRNAITWNAMLGAYIQHGAEED 476
Query: 108 EVEIFNSMEHDHEVKP 123
++++++M +V P
Sbjct: 477 GLKMYSAMLSQKDVTP 492
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+T+ L++CA+L SL G+Q+ ++++ D +V SA I +Y CG
Sbjct: 263 YTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ 322
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+W +I G + E +++ L+ + A + D +++ C
Sbjct: 323 DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 371
>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
Length = 717
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 99/190 (52%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
TT+L +C+++++L G++I +I+K D+ + ++ +++Y CG
Sbjct: 347 LTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVML 406
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+WN M++ YA N +E+ I+L++ +I SGV DG+TFVA+L+ CS +GL +
Sbjct: 407 TKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLS 466
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
+F M+ + V P CL MP+K +WG L++SC++H
Sbjct: 467 LFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLH 526
Query: 147 SNVRLAKKAA 156
NV + + AA
Sbjct: 527 GNVSVGEIAA 536
Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F + L +C L L +GR I +IVK D V + + +Y G
Sbjct: 239 IEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDAR 298
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN +I ++ V + +L++ + + T IL CS
Sbjct: 299 KVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVA 358
Query: 104 LVYAEVEI 111
+ EI
Sbjct: 359 ALLTGKEI 366
>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 710
Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 99/190 (52%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
TT+L +C+++++L G++I +I+K D+ + ++ +++Y CG
Sbjct: 340 LTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVML 399
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+WN M++ YA N +E+ I+L++ +I SGV DG+TFVA+L+ CS +GL +
Sbjct: 400 TKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLS 459
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
+F M+ + V P CL MP+K +WG L++SC++H
Sbjct: 460 LFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLH 519
Query: 147 SNVRLAKKAA 156
NV + + AA
Sbjct: 520 GNVSVGEIAA 529
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F + L +C L L +GR I +IVK D V + + +Y G
Sbjct: 232 IEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDAR 291
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN +I ++ V + +L++ + + T IL CS
Sbjct: 292 KVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVA 351
Query: 104 LVYAEVEI 111
+ EI
Sbjct: 352 ALLTGKEI 359
>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 95/187 (50%), Gaps = 42/187 (22%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
LSSCA++++L LG+Q+ R+VK G+ G+A + +Y CG
Sbjct: 411 ALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKD 470
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113
V+WN MI GYA + + ++A++L++ + + +K D VT V +L+ CSH+GLV +E FN
Sbjct: 471 IVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFN 529
Query: 114 SMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSNV 149
SM ++ + C+ MP+ D WG L+ + ++H +
Sbjct: 530 SMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDT 589
Query: 150 RLAKKAA 156
L +KAA
Sbjct: 590 ELGEKAA 596
>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
Length = 922
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 40/194 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T +L C L + +G+QI T +K G +++ V +A I++Y CG
Sbjct: 549 PNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCADSRRIF 608
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
TWN +I GYA++ +AI +Y+ + ++GV + VTFV +L CSH+GLV
Sbjct: 609 DLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVD 668
Query: 107 AEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSS 142
+ F SM D+ + P C+ MP + D V+W L+ +
Sbjct: 669 EGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGA 728
Query: 143 CQVHSNVRLAKKAA 156
C++H N + K+AA
Sbjct: 729 CKIHKNAEIGKRAA 742
>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
Length = 865
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + T+ CA + + LG QI+ VK G ++ V +A I +Y CG
Sbjct: 500 VTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQ 559
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY+++ +QA + D+++ G K D +++VA+L+ CSHSG
Sbjct: 560 KLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSG 619
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F+ M H + P C+ MP K VWG L
Sbjct: 620 LVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGAL 679
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N LA+ AA
Sbjct: 680 LSACKIHGNDELAELAA 696
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+T+ L++CA+L SL G+Q+ ++++ D +V SA I +Y CG
Sbjct: 273 YTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ 332
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+W +I G + E +++ L+ + A + D +++ C
Sbjct: 333 DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 381
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 21/136 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QF T++S C L LGRQ+ + +K G+ I V ++ I++Y CG
Sbjct: 371 QFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFS 430
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+W MI Y++ + +A + + + +T+ A+L G
Sbjct: 431 SMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDT----RNAITWNAMLGAYIQHGAEED 486
Query: 108 EVEIFNSMEHDHEVKP 123
++++++M +V P
Sbjct: 487 GLKMYSAMLSQKDVTP 502
Score = 38.9 bits (89), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 21/120 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT------ 56
P F F V+ SC L L Q+L K + D V +A ++++ CG
Sbjct: 136 PNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRL 195
Query: 57 -----------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
N M+ GYA+ ++ AI ++D+ + D V++ ++ S SG V
Sbjct: 196 FSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDM----AERDVVSWNMMIAALSQSGRV 251
>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 40/194 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T +L C L + +G+QI T +K G +++ V +A I++Y CG
Sbjct: 549 PNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCADSRRIF 608
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
TWN +I GYA++ +AI +Y+ + ++GV + VTFV +L CSH+GLV
Sbjct: 609 DLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVD 668
Query: 107 AEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSS 142
+ F SM D+ + P C+ MP + D V+W L+ +
Sbjct: 669 EGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGA 728
Query: 143 CQVHSNVRLAKKAA 156
C++H N + K+AA
Sbjct: 729 CKIHKNAEIGKRAA 742
>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
Length = 865
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + T+ CA + + LG QI+ VK G ++ V +A I +Y CG
Sbjct: 500 VTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQ 559
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY+++ +QA + D+++ G K D +++VA+L+ CSHSG
Sbjct: 560 KLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSG 619
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F+ M H + P C+ MP K VWG L
Sbjct: 620 LVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGAL 679
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N LA+ AA
Sbjct: 680 LSACKIHGNDELAELAA 696
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 21/136 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QF T++S C L LGRQ+ + +K G+ I V ++ I++Y CG
Sbjct: 371 QFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFS 430
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+W MI Y++ + +A + + + +T+ A+L G
Sbjct: 431 SMSERDIVSWTSMITAYSQIGNIIKAREFFDGM----ATRNAITWNAMLGAYIQHGAEED 486
Query: 108 EVEIFNSMEHDHEVKP 123
++++++M +V P
Sbjct: 487 GLKMYSAMLSQKDVTP 502
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+T+ L++CA+L SL G+Q+ ++++ D +V SA I +Y CG
Sbjct: 273 YTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ 332
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+W +I G + E +++ L+ + A + D +++ C
Sbjct: 333 DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 381
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 21/120 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT------ 56
P F F V+ SC L L Q+L K + D V +A ++++ CG
Sbjct: 136 PNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRL 195
Query: 57 -----------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
N M+ GYA+ ++ AI ++D+ + D V++ ++ S SG V
Sbjct: 196 FSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDM----AERDVVSWNMMIAALSQSGRV 251
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F ++L++CA L +L LG I I K+ D FVG+A I++Y NCG
Sbjct: 348 IKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAI 407
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W +I G A N Y E+A+ ++ ++ + + D VT + +L C+HSG
Sbjct: 408 RIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSG 467
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V + F M H ++P C+ MP K + +VWG L
Sbjct: 468 MVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSL 527
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH + +A+ AA
Sbjct: 528 LGACRVHRDEEMAEMAA 544
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ + +L + +++ GR++ IVK G+ +++FV +A I++Y G
Sbjct: 115 VMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVAR 174
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTWN MI GY ++ ++++ L+ ++ V +T V++L+ CS
Sbjct: 175 GVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACS 231
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 50/152 (32%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFV-GSAPINIYCNCG----- 54
V P+ +VLS+C+KL L +G+++ R VKD + V +A I++Y CG
Sbjct: 216 VLPSSITLVSVLSACSKLKDLNVGKRV-HRYVKDLKIEPVRVLENALIDMYAACGDMDTA 274
Query: 55 -------------------------------------------VTWNEMIHGYAENEYVE 71
V+W MI GY + +
Sbjct: 275 LGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFK 334
Query: 72 QAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ +SL++++ A+ +K D T V+ILT C+H G
Sbjct: 335 EVLSLFREMQAANIKPDEFTMVSILTACAHLG 366
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+ + +V++SCA L +L LG + I+++ ++ +G+A +++Y CG
Sbjct: 241 VHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAI 300
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W +I G+A + Y E+A+ + + +G+ +TF A+L+ CSH G
Sbjct: 301 WVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGG 360
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +E+F SM+ D+ ++P+ C+ MP K + +WG L
Sbjct: 361 LVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGAL 420
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N +A++A
Sbjct: 421 LGACRIHKNSEIAERAG 437
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 48/149 (32%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + ++ +C + SL +G Q +I++ G+ +D++V ++ + +Y G
Sbjct: 111 PDNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYV 170
Query: 55 ----------------------------------------VTWNEMIHGYAENEYVEQAI 74
VTW+ MI GYA+N + ++AI
Sbjct: 171 FRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAI 230
Query: 75 SLYKDIIASGVKHDGVTFVAILTPCSHSG 103
LY + + GV + V+++ C+H G
Sbjct: 231 ELYFLLQSEGVHANETVMVSVIASCAHLG 259
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + VLS+C++L +L LGR + + + K + FVG A IN+Y CG
Sbjct: 245 VMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQ 304
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+T+N MI G+A + +A+ L++ +I G VTFV +L CSH G
Sbjct: 305 RVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGG 364
Query: 104 LVYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDL 139
L EIF+SM D+ ++P+ +M D V+ G L
Sbjct: 365 LAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGAL 424
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N+ LA++ A
Sbjct: 425 LSACKIHGNLELAERVA 441
>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 88/183 (48%), Gaps = 41/183 (22%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+LSSC+ +L GR++ +K + N+IFVGSA I++Y NCG
Sbjct: 331 ILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKD 390
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113
V WN MI G N Y AI L+ + SG+ D TFV++L CSH+G+VY ++IF
Sbjct: 391 VVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFY 450
Query: 114 SMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSNV 149
M V P C+ MP++ D V+ L+ +C++H N+
Sbjct: 451 HMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNI 510
Query: 150 RLA 152
+L
Sbjct: 511 KLG 513
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 20/120 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P P ++L L L +QI +I+ G ++ F+ ++ +N Y CG
Sbjct: 22 PLAQPHASILRKLKDLKPL---QQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQI 78
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W +I G A+N+ +AI +++++I K + VT ++L ++ GL+
Sbjct: 79 FHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLI 138
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++VL + A L + + + + V+ G+ ++FV +A +++Y G
Sbjct: 120 PNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQL 179
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
VTWN ++ GY+++ + E+AI L+ + G+ D T ++ L P S S
Sbjct: 180 FESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMS-LIPASLS 235
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 21/117 (17%)
Query: 8 FTTVLS---SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC--NC--------- 53
F T++S + + L +G I I++ GY ND + +A ++IY NC
Sbjct: 223 FYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFS 282
Query: 54 ------GVTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPCSHSG 103
W M+ G++ + ++AI + ++ +K D + + IL+ CSHSG
Sbjct: 283 EMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSG 339
>gi|302759362|ref|XP_002963104.1| hypothetical protein SELMODRAFT_78378 [Selaginella moellendorffii]
gi|300169965|gb|EFJ36567.1| hypothetical protein SELMODRAFT_78378 [Selaginella moellendorffii]
Length = 542
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 45/192 (23%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ VL +C+ LS+L +GRQ+ IV G+G+++ + A +N+YC CG
Sbjct: 147 YLCVLEACSSLSALKVGRQVHKEIVAAGFGDELPLAGAIVNMYCKCGSLVEAREVFDGMK 206
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+ WN M+ GY ++ + ++A+ L++ GV D +TFV ILT CSH+G+V V
Sbjct: 207 ARNMIAWNSMMGGYTQHGHPKRALQLFELACLDGVLPDEITFVTILTACSHAGMVKPGVW 266
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPY----KDDLVVWGDLVSS 142
F S+ D ++P C+ MP D+ V W L++S
Sbjct: 267 HFGSIRADFGMEPSVDHYVCMVDMLGRAGWLDAAERLVERMPAFSNPADEFVPWMALLAS 326
Query: 143 CQVHSNVRLAKK 154
C+VH++V+ A +
Sbjct: 327 CKVHTDVKRAAR 338
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 51/152 (33%), Gaps = 54/152 (35%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V + VL CA + L GR I R++ D+ +G+A +N+Y CG
Sbjct: 6 VKANEVTLAAVLGICASIKDLAGGRSIHGRVI--AAKKDVVIGNALVNMYSKCGALREAR 63
Query: 55 --------------------------------------------VTWNEMIHGYAENEYV 70
V+W MI Y NE
Sbjct: 64 ASFQEMLDKKLVVANTLIHTYGRCGSPSDARRVFDSLQRSARNAVSWASMIAAYTSNEQA 123
Query: 71 EQAISLYKDIIA--SGVKHDGVTFVAILTPCS 100
+ + LY+++I K D V ++ +L CS
Sbjct: 124 KAGVELYQEMIQREESKKMDPVAYLCVLEACS 155
>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 674
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 101/198 (51%), Gaps = 45/198 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P Q F++V+ +CA L++L LG+Q+ I++ G+ ++ F+ S+ +++Y CG
Sbjct: 296 VKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMAR 355
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W +I G A + + A+SL+++++ GVK V F+A+LT CSH
Sbjct: 356 YIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSH 415
Query: 102 SGLVYAEVEIFNSMEHDHEVKPKCLMPYK--DDLV-----------------------VW 136
+GLV + FNSM+ D V P L Y DL+ VW
Sbjct: 416 AGLVDEGWKYFNSMQRDFGVAPG-LEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVW 474
Query: 137 GDLVSSCQVHSNVRLAKK 154
L+++C+ H N+ LA+K
Sbjct: 475 STLLAACRAHKNIELAEK 492
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
+ P F +++L + +++ G++I ++ G+ D+F+GS+ I++Y C
Sbjct: 195 LRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSV 254
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++WN +I G +N +Q + ++ ++ VK V+F +++ C+H
Sbjct: 255 CAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAH 312
>gi|356541211|ref|XP_003539074.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Glycine max]
Length = 548
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 42/197 (21%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+PT + +L +CA + + +GR+I + G DI+V SA +++Y CG
Sbjct: 298 HPTSATISALLPACATAARVSVGREIHGYALVTGVEGDIYVRSALVDMYAKCGFISEARN 357
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGV-KHDGVTFVAILTPCSHSG 103
VTWN +I G+A + Y E+AI L+ + GV K D +TF A LT CSH G
Sbjct: 358 LFSRMPEKNTVTWNSIIFGFANHGYCEEAIELFNQMEKEGVAKLDHLTFTAALTACSHVG 417
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+F M+ + ++P+ C+ MP + DL VWG L
Sbjct: 418 DFELGQRLFKIMQEKYSIEPRLEHYACMVDLLGRAGKLHEAYCMIKTMPIEPDLFVWGAL 477
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+ H +V LA+ AA
Sbjct: 478 LAACRNHRHVELAEVAA 494
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 26/153 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F +VL +C + G +I I+K + D FV S+ I +Y C
Sbjct: 131 FVIPSVLKACGHVGDRITGEKIHGFILKCSFELDSFVSSSLIVMYSKCAKVEDARKVFDG 190
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V N ++ GY + +A+ L + + G+K + VT+ ++++ S G
Sbjct: 191 MTVKDTVALNAVVAGYVQQGAANEALGLVESMKLMGLKPNVVTWNSLISGFSQKGDQGRV 250
Query: 109 VEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
EIF M D V+P D+V W ++S
Sbjct: 251 SEIFRLMIAD-GVEP--------DVVSWTSVIS 274
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 93/198 (46%), Gaps = 44/198 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T+ +S+CA++ SL R + + + Y +D+F+ SA I+++ CG
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGAR 378
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ MI GY + +AISLY+ + GV + VTF+ +L C+HSG
Sbjct: 379 LVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSG 438
Query: 104 LVYAEVEIFNSMEHDHEVKP-------------------------KCLMPYKDDLVVWGD 138
+V FN M DH++ P KC MP + + VWG
Sbjct: 439 MVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKC-MPVQPGVTVWGA 496
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+S+C+ H +V L + AA
Sbjct: 497 LLSACKKHRHVELGEYAA 514
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 19/116 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F +L +C+ LS L +GR + ++ + G+ D+FV + I +Y C
Sbjct: 115 VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSAR 174
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+W ++ YA+N +A+ ++ + VK D V V++L
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLN 230
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +VL++ L L GR I +VK G + + + +Y CG
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN MI GYA+N Y +AI ++ ++I V+ D ++ + ++ C+ G
Sbjct: 278 ILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIF 112
WN +I GY+ N + + A+ +Y ++ + V D TF +L C SGL + ++ F
Sbjct: 87 WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKAC--SGLSHLQMGRF 140
>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 97.1 bits (240), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 23/140 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG----YG--NDIFVGSAPINIYCNCG-- 54
PT + F +L++CA L+ L LGRQ ++K G YG +D+FVG+A I++Y CG
Sbjct: 383 PTHYTFGNLLNACANLADLQLGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMKCGSV 442
Query: 55 ---------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN MI GYA+N Y +A+ L++ ++ASG K D VT + L C
Sbjct: 443 EEGCRIFENMVERDYVSWNAMIVGYAQNGYGMEALGLFRKMLASGEKPDHVTMIGALCAC 502
Query: 100 SHSGLVYAEVEIFNSMEHDH 119
SH+GLV + F+SM ++
Sbjct: 503 SHAGLVQEGRKHFSSMTEEY 522
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 25/154 (16%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++ F + LS+CA L L +G QI ++K + D+++GSA I+IY CG
Sbjct: 150 NEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQFLLDVYMGSALIDIYSKCGFVDCAQRVF 209
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V+WN +I Y +N +A+ ++ ++ SG + D VT ++++ C+
Sbjct: 210 DGMMERNVVSWNSLITCYEQNGPSREALEIFMRMMESGFEPDEVTLASVVSACASLAAAK 269
Query: 107 AEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140
+EI H VK L +DDL++ LV
Sbjct: 270 QGLEI-----HACVVKRDKL---RDDLILSNALV 295
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 80/171 (46%), Gaps = 31/171 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCG------- 54
P + +V+S+CA L++ G +I +VK D +D+ + +A +++Y CG
Sbjct: 250 PDEVTLASVVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAKCGRINEARC 309
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+ M+ GYA+ V+ A L+ +I V V++ A++ + +G
Sbjct: 310 VFDRMPIRNVVSETSMVSGYAKTASVKAARLLFTKMIERNV----VSWNALIAGYTQNGE 365
Query: 105 VYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155
+ +F ++ + C Y +G+L+++C ++++L ++A
Sbjct: 366 NEEALRLFRMLKRE----AICPTHY-----TFGNLLNACANLADLQLGRQA 407
Score = 42.4 bits (98), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 48/142 (33%)
Query: 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------ 54
PF +L SC K SL R+I RI+K + ++F+ + I+ Y CG
Sbjct: 21 PFAKLLDSCLKSKSLRDTRRIHARIIKTQFAYEVFIQNRLIDAYGKCGCFDDARKIFDQM 80
Query: 55 ------------------------------------VTWNEMIHGYAENEYVEQAISLYK 78
+WN +I G+A+++ E+A++ +
Sbjct: 81 PEKNVFSWNAIVSTLVKSGFLDEGARLFVSMPEPDQCSWNSLIAGFAQHDRFEEALNYFV 140
Query: 79 DIIASGVKHDGVTFVAILTPCS 100
+ G + TF + L+ C+
Sbjct: 141 KMHRKGFVLNEYTFGSGLSACA 162
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + +L++CA SL ++I + ++KDGY +D +G+A ++ Y CG
Sbjct: 646 PDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLV 705
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +I G A++ + + L++ + G+K D VTFV++L+ CSH+GL+
Sbjct: 706 FDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLL 765
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F SM D + P C+ MP++ + +WG L+
Sbjct: 766 EEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLG 825
Query: 142 SCQVHSNVRLAKKAA 156
+C++H NV +A++AA
Sbjct: 826 ACRIHGNVPVAERAA 840
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 66/117 (56%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + + +L++C ++L GR+I +R+VKDG+ DI V +A I++Y CG
Sbjct: 442 MMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDAR 501
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++W MI G A++ +A+++++D+ +G+K + VT+ +IL CS
Sbjct: 502 LLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACS 558
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 66/126 (52%), Gaps = 17/126 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +T++L++C+ ++L GR+I ++++ G D V + +N+Y CG
Sbjct: 545 PNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQV 604
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V +N MI GYA + ++A+ L+ + G+K D VT++ +L C++SG +
Sbjct: 605 FDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSL 664
Query: 106 YAEVEI 111
EI
Sbjct: 665 EWAKEI 670
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + + VL++ + ++L G+ + + I+ G+ +D+ VG+A + +Y CG
Sbjct: 341 VVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCR 400
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN MI G AE E+A +Y + G+ + +T+V +L C +
Sbjct: 401 QVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPT 460
Query: 104 LVYAEVEIFNSMEHD 118
++ EI + + D
Sbjct: 461 ALHWGREIHSRVVKD 475
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
+ +L C ++ L GR++ I++ D + +A IN+Y CG
Sbjct: 144 YMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLN 203
Query: 56 -------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
+WN M+ GY + Y+E+A+ L +++ G+ T + +L+ C
Sbjct: 204 HTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSC 254
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+LSSC S+L GR+I +K D+ V + +N+Y CG
Sbjct: 250 LLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKS 309
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W +I GYA+ + E A +++ + GV + +T++ +L S
Sbjct: 310 VVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFS 356
>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g39620-like [Vitis vinifera]
Length = 1005
Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 41/195 (21%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P F +VL + A L++ G I++ G+ ++ VG++ I++Y CG
Sbjct: 630 HPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEK 689
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+WN M+ GYA + + ++AI+L+ + S V+ D V+FV++L+ C H+GL
Sbjct: 690 LFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGL 749
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V +IF+SM + +KP C+ MP + D VWG L+
Sbjct: 750 VEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALL 809
Query: 141 SSCQVHSNVRLAKKA 155
SC++HSNV+L + A
Sbjct: 810 GSCRMHSNVKLGEVA 824
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + ++L +CA LS L LG+ I VK +D+ G+A +++Y CG
Sbjct: 428 PNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTT 487
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTWN +I+GYA+ AI ++ + S + D T V ++ C+
Sbjct: 488 FNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACA 542
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P V+ +CA L+ L G I IVK G+ +D V +A I++Y CG
Sbjct: 527 INPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAE 586
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTWN +I Y +N + ++AIS + + + VTFV++L ++
Sbjct: 587 FLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAY 645
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++ FT VL +C +L G I + G D+F+G+ +++Y G
Sbjct: 127 PDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREV 186
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V WN MI G +++E +A+ ++ + GV+ V+ + +
Sbjct: 187 FDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLF 237
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 21/117 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY-----CNCG- 54
Y + +LSSC L+ L QI +I+ G+ + + + IN+Y C+
Sbjct: 28 TYTNYLHYPRLLSSCKHLNPLL---QIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLAR 83
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ WN MI Y ++ +A+ +Y ++ G++ D TF +L C+
Sbjct: 84 SVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACT 140
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAE 66
G++I ++ +DI V + + +Y CG V W+ +I +
Sbjct: 348 GKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQ 407
Query: 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
Y E+A+SL++++ +K + VT ++IL C+ L+
Sbjct: 408 TGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLL 446
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +++L++CA LS+ G+Q+ +K G+ DIF ++ +N+Y CG
Sbjct: 482 IKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDAD 541
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W+ MI GYA++ + ++A+ L+ ++ GV + +T V++L C+H+G
Sbjct: 542 RAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAG 601
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV + F ME +KP C+ +P++ D VWG L
Sbjct: 602 LVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGAL 661
Query: 140 VSSCQVHSNVRLAKKAA 156
+ + ++H N+ L +KAA
Sbjct: 662 LGAARIHKNIELGQKAA 678
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+F F +VL +C+ L +GR++ V G+ +D FV + + +Y CG
Sbjct: 81 NEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLF 140
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN + Y ++E +A+ L+K+++ SG+ + + IL C+
Sbjct: 141 GGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACA 194
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 51/186 (27%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F + +L++CA L LGR+I ++K G D F +A +++Y G
Sbjct: 179 IMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAV 238
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS--- 100
V+WN +I G ++ + A+ L ++ SG + + T + L C+
Sbjct: 239 AVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMG 298
Query: 101 --------HSGLV-----------------YAEVEIFNSMEHDHEVKPKCLMPYKDDLVV 135
HS L+ Y++ E+ + ++ P K D++
Sbjct: 299 FKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMP------KKDIIA 352
Query: 136 WGDLVS 141
W L+S
Sbjct: 353 WNALIS 358
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F ++ L +CA + LGRQ+ + ++K +D+F +++Y C
Sbjct: 282 PNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRA 341
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+ WN +I GY++ A+SL+ + + + + T +L
Sbjct: 342 YDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVL 392
Score = 42.0 bits (97), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 35 GYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVA 94
GY + S+ +++ V+W+ ++ GY +N +VE+A+ ++ ++ GVK + TF +
Sbjct: 33 GYARKLVDESSELDV-----VSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPS 87
Query: 95 ILTPCS 100
+L CS
Sbjct: 88 VLKACS 93
Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
Q +TVL S A L ++ + +QI T +K G +D +V ++ ++ Y C
Sbjct: 384 NQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIF 443
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V + MI Y++ E+A+ LY + + +K D ++L C++
Sbjct: 444 EERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACAN 498
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +VL++CA L +L LG I ++K + ++I + ++ I++Y CG
Sbjct: 220 VEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLAR 279
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI G+A N + E+A+ + + G + DGV+F LT CSHSG
Sbjct: 280 QVFEQMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSG 339
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV ++ F+ M+ ++ P+ CL MP K + VV G L
Sbjct: 340 LVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSL 399
Query: 140 VSSCQVHSNVRLAKK 154
+++C+ H +V LA++
Sbjct: 400 LAACRTHGDVGLAER 414
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 24/136 (17%)
Query: 1 VYPTQFPFTTVLSSCAK--LSSLFLGRQILTRIVKDGYGND-IFVGSAPINIYCNCG--- 54
V P F T+LS+C L L G I + K G + + VG+A +++Y CG
Sbjct: 85 VRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLD 144
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN MI G N V +AI L+ + + D +++ +++
Sbjct: 145 LAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQM----SERDAISWTSMIGGFV 200
Query: 101 HSGLVYAEVEIFNSME 116
G +E F M+
Sbjct: 201 KKGCFEQALEWFREMQ 216
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + TV+++CAKL ++ R IV++G+ D+ +G+A I++Y CG
Sbjct: 197 VVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAR 256
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W+ MI Y + + AI L+ +++ + + VTFV++L CSH+G
Sbjct: 257 EVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAG 316
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ + FNSM +H V+P C+ M + D +W L
Sbjct: 317 LIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSAL 376
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++HS + LA+KAA
Sbjct: 377 LGACRIHSKMELAEKAA 393
>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 104/203 (51%), Gaps = 47/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIF---VGSAPINIYCNCG--- 54
V P F +VL +CA + + G+Q+ +I++ +++F V +A +++Y CG
Sbjct: 340 VLPRAQTFVSVLDACASEALIGRGKQVHCQIIRGRSSDNLFNVYVFNALMDMYAKCGDMK 399
Query: 55 ---------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN +I G+A+N E +++++ +I S ++ + VTF+ +L+ C
Sbjct: 400 SAENLFEMMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIESNIEPNHVTFLGVLSAC 459
Query: 100 SHSGLVYAEVEIFNSMEHDHEVKPK---------------------CLM-----PYKDDL 133
+H+GLV A +E+ +SME + VKPK CL+ + +
Sbjct: 460 NHAGLVNAGLELLDSMERRYGVKPKSNHYALLIDLLGRKNRLEEAMCLIEKVPNEISNHI 519
Query: 134 VVWGDLVSSCQVHSNVRLAKKAA 156
+WG ++ C+VH N+ LA+KAA
Sbjct: 520 AMWGAVLGGCRVHGNLELARKAA 542
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/127 (18%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
F++++S+C SL G+ + ++++K + F+ + I++Y CG
Sbjct: 81 FSSLISNCVSAKSLKHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLP 140
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
TWN ++ Y++ QA L+ ++ + + V++ ++++ + V+
Sbjct: 141 NKTTRTWNTLLSFYSKKGVFNQAYKLFDEM----PQRNLVSYNSLISGLTRHEFHKEAVK 196
Query: 111 IFNSMEH 117
F M++
Sbjct: 197 FFREMQN 203
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W +I G+ +N +A+ ++ +I GV TFV++L C+ L+
Sbjct: 310 VSWAALISGFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALI 360
Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 59/128 (46%), Gaps = 21/128 (16%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F +++S+C+ L ++ RQ+ G+ ++ + +A I+ Y CG
Sbjct: 212 EFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSFCLFR 271
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+W M+ Y ++ A ++ ++ VK+ V++ A+++ +G Y
Sbjct: 272 SMVEKDAVSWTSMVVTYTRASRIDDACKVFNEM---PVKYT-VSWAALISGFVKNGRCYE 327
Query: 108 EVEIFNSM 115
+E+F+ M
Sbjct: 328 ALEVFHQM 335
>gi|15228119|ref|NP_181269.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216847|sp|Q9ZUT4.1|PP192_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37320
gi|4056486|gb|AAC98052.1| hypothetical protein [Arabidopsis thaliana]
gi|37202040|gb|AAQ89635.1| At2g37320 [Arabidopsis thaliana]
gi|51969760|dbj|BAD43572.1| hypothetical protein [Arabidopsis thaliana]
gi|330254289|gb|AEC09383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 500
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 43/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + FT +LS+C +L GR + + + G + + + ++ I++YC CG
Sbjct: 219 PNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRI 278
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDII-ASGVKHDGVTFVAILTPCSHSGL 104
V+WN MI GYA++ QAI L++ ++ SG K D +T++ +L+ C H+GL
Sbjct: 279 FDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGL 338
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V + FN M +H +KP+ CL MP K + V+WG L+
Sbjct: 339 VKEGRKFFNLMA-EHGLKPELNHYSCLVDLLGRFGLLQEALELIENMPMKPNSVIWGSLL 397
Query: 141 SSCQVHSNVRLAKKAA 156
SC+VH +V +AA
Sbjct: 398 FSCRVHGDVWTGIRAA 413
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ ++ + SC G +K G+ +D+++GS+ + +Y + G
Sbjct: 121 YGLSSAVRSCGLNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEE 180
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI G+A+ V+ + LY + S + TF A+L+ C+ SG
Sbjct: 181 MPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSG 235
>gi|302796918|ref|XP_002980220.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
gi|300151836|gb|EFJ18480.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
Length = 739
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 96/193 (49%), Gaps = 45/193 (23%)
Query: 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------ 54
+ VL +C+ LS+L +GRQ+ IV G+G+++ + A +N+YC CG
Sbjct: 343 AYLCVLEACSSLSALKVGRQVHEEIVAAGFGDELPLAGAIVNMYCKCGSLVEAREVFDGM 402
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEV 109
+ WN M+ GY ++ + ++A+ L++ GV D +TFV ILT CSH+G+V V
Sbjct: 403 KARNMIAWNSMMGGYTQHGHPKRALQLFELACLDGVLPDEITFVTILTACSHAGMVKPGV 462
Query: 110 EIFNSMEHDHEVKPK-----CL-------------------MPY----KDDLVVWGDLVS 141
F S+ D ++P C+ MP D+ V W L++
Sbjct: 463 WHFGSIRADFGMEPSVDHYVCMVDMLGRAGWLDAAERLVERMPAFSNPADEFVPWMALLA 522
Query: 142 SCQVHSNVRLAKK 154
SC+VH++V+ A +
Sbjct: 523 SCKVHTDVKRAAR 535
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 19/120 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V + VL C+ + L GR I R++ D+ +G+A +N+Y CG
Sbjct: 131 VKANEVTLAAVLGICSSIKDLAGGRSIHGRVI--AAKKDVVIGNALVNMYSKCGSLREAR 188
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI +E+ +A+ ++ ++++ V + ++ +A+L CS+ G
Sbjct: 189 ASFQEMVVRDVVSWTTMITALSEHGEWNEAVEIFWEMVSENVAPNEISCLAVLGACSNLG 248
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 47/123 (38%), Gaps = 23/123 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND--IFVGSAPINIYCNCG---- 54
V P + VL +C+ L R I I G D + V + I+ Y CG
Sbjct: 230 VAPNEISCLAVLGACSNLGDRSQVRVIHEFIASGGLELDKKLVVANTLIHTYGRCGSPSD 289
Query: 55 ---------------VTWNEMIHGYAENEYVEQAISLYKDIIA--SGVKHDGVTFVAILT 97
V+W MI Y NE + + LY+++I K D V ++ +L
Sbjct: 290 ARRVFDSLQHSARNAVSWASMIAAYTSNEQAKAGVELYQEMIQREESKKMDPVAYLCVLE 349
Query: 98 PCS 100
CS
Sbjct: 350 ACS 352
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 30 RIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQ 72
R++ G D ++G+ + +Y G +W +I +A+N + +
Sbjct: 59 RMIAQGLDADTYLGNNLVRVYGKFGGLDRAWAAFDRIAAKNVFSWTIVISAFAQNGHHRE 118
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCS 100
A+ L++ + GVK + VT A+L CS
Sbjct: 119 ALVLFRQMEREGVKANEVTLAAVLGICS 146
>gi|242066458|ref|XP_002454518.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
gi|241934349|gb|EES07494.1| hypothetical protein SORBIDRAFT_04g032600 [Sorghum bicolor]
Length = 834
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 33/189 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + TVL SCA L+++ LG+QI +I+K D F+ S +++Y CG
Sbjct: 529 VKPDHFTYATVLDSCANLATIELGKQIHGQIIKQEMLGDEFISSTLVDMYAKCGNMPDSQ 588
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GYA + +A+ +++ + V + TFVA+L CSH G
Sbjct: 589 LMFEKVQKLDFVSWNAMICGYALHGQGFEALEMFERTQKANVAPNHATFVAVLRACSHVG 648
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-----------MPYKDDLVVWGDLVSSCQVHS 147
L+ F+ M ++++P+ C+ MP + D V+W L+S C++
Sbjct: 649 LLDDGCRYFHLMTSRYKLEPQLEHFACMGPQEALKFIRSMPLEADAVIWKTLLSICKIRQ 708
Query: 148 NVRLAKKAA 156
+V +A+ AA
Sbjct: 709 DVEVAETAA 717
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 17/113 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F + +VL +CA L SL G + + +K G G D FV S +++YC CG
Sbjct: 433 FTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEALKLHDR 492
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I G++ N+ E+A + +++ GVK D T+ +L C++
Sbjct: 493 IGGQELVSWNSIIAGFSLNKQSEEAQKFFSEMLDMGVKPDHFTYATVLDSCAN 545
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 41/194 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P + T LS+CA L SL G + I K +D+FVG++ I++YC CGV
Sbjct: 301 VKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKAL 360
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+W +I G A N + E A++++ ++ G+ TFV +L C+H G
Sbjct: 361 QVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVG 420
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV VE F SME+ + + P+ C+ MP D+V+W L
Sbjct: 421 LVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRIL 480
Query: 140 VSSCQVHSNVRLAK 153
+S+C++H N+ LA+
Sbjct: 481 LSACKLHGNLVLAE 494
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 18/114 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F + SCA++S + G+ + +K G+ + FV +A I++Y G
Sbjct: 71 SHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVF 130
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFV-AILTPC 99
V+WN +I GY + ++ + L++++ A V+ D VT + AI C
Sbjct: 131 DGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATC 184
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI GY+ + +A+ L+++++ S VK D +T L+ C+H G
Sbjct: 271 ISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLG 319
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+ WN MIHG ++++ AI Y + G++ +TF+ + C+
Sbjct: 38 LVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCAR 84
>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
Length = 649
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 99/195 (50%), Gaps = 41/195 (21%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P F +VL + A L++ G I++ G+ ++ VG++ I++Y CG
Sbjct: 274 HPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEK 333
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+WN M+ GYA + + ++AI+L+ + S V+ D V+FV++L+ C H+GL
Sbjct: 334 LFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGL 393
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V +IF+SM + +KP C+ MP + D VWG L+
Sbjct: 394 VEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALL 453
Query: 141 SSCQVHSNVRLAKKA 155
SC++HSNV+L + A
Sbjct: 454 GSCRMHSNVKLGEVA 468
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 21/103 (20%)
Query: 31 IVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQA 73
+ K G D+F+G+ +++Y G V WN MI G +++E A
Sbjct: 141 VEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVA 200
Query: 74 ISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116
++ + V D V++ ++ +H+G +E+F+ M+
Sbjct: 201 RRVFDQM----VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMK 239
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P F ++L++CA L + GR I IV++ + + V +A I++YC CG
Sbjct: 254 VKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGL 313
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN MI G A N E+A+ L+ ++ +G++ D V+F+ +LT C+HSG
Sbjct: 314 KVFECAPTKQLSCWNSMILGLANNGCEERAMDLFLELERTGLEPDSVSFIGVLTACAHSG 373
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
V+ E F M + ++P C+ MP + D ++W L
Sbjct: 374 EVHKAGEFFRLMREKYMIEPSIKHYTCMVNVLGGAGLLDEAEALIKKMPVEGDTIIWSSL 433
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+ + NV +AK+AA
Sbjct: 434 LAACRKNGNVEMAKRAA 450
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 69/140 (49%), Gaps = 22/140 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + + +V + A L GRQ+ R++K+G +D F+ + +++Y CG
Sbjct: 122 VKPQRLTYPSVFKAYASLGLARDGRQLHGRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAW 181
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I G A+ ++QA L+ ++ + +GV++ ++++ +G
Sbjct: 182 RLFVGMMGFDVVAWNSIIMGLAKCGLIDQAQKLFDEM----PQRNGVSWNSMISGFVRNG 237
Query: 104 LVYAEVEIFNSMEHDHEVKP 123
+E+F M+ + +VKP
Sbjct: 238 RFKDALEMFREMQ-ERDVKP 256
>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 823
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 42/195 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F F ++LS+ A + G+Q+ +K G+ +D + ++ +++Y CG
Sbjct: 449 STFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAF 508
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W +I A++ + E+A+SL+ D+I SGVK + VT++A+L+ CSH GLV
Sbjct: 509 DEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLV 568
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
E F SM+ DH + P+ C+ MP K D +VW L+
Sbjct: 569 KEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLG 628
Query: 142 SCQVHSNVRLAKKAA 156
+C+ + N+ + + AA
Sbjct: 629 ACRTYENIEIGEIAA 643
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54
+ P ++++L +CA LS GRQI R++K GN VG+A +++Y G
Sbjct: 350 IEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESG 403
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 24 GRQILTRIVKDGY-GNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYA 65
G +L +K G+ G D+ VG A I+++ G V W MI Y
Sbjct: 166 GGTVLGFAIKTGFWGTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYV 225
Query: 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ +A+ L+ ++ G + DG T ++++ C+ G
Sbjct: 226 QGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQG 263
>gi|218193589|gb|EEC76016.1| hypothetical protein OsI_13171 [Oryza sativa Indica Group]
Length = 950
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++VL +CA L SL +G+ + +I+K G IFVG+A ++Y G
Sbjct: 508 PGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRV 567
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V W MI G AEN + E++I L++D+I++G+ + TF+AIL CSHSGLV
Sbjct: 568 FYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLV 627
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL---------MPYKDDLVV----------WGDLVS 141
+ F M+ + PK C+ + +DL++ W L+S
Sbjct: 628 EHAMHYFEMMQA-CGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLS 686
Query: 142 SCQVHSNVRLAKKAA 156
+C ++ N + ++AA
Sbjct: 687 ACNIYRNKEMGERAA 701
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 17/95 (17%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F++VL +CA L L GR+I + +K N++FV SA I++YC C
Sbjct: 381 FSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP 440
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGV 85
V WN +I GY+ N + +A L+K + A V
Sbjct: 441 QKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNV 475
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 41/193 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +VLS+C +L +L GR + + I +G ++ VG+A +++Y CG
Sbjct: 188 PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLV 247
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI GYA + + ++A+ L+K + G+ +TF+ IL+ C HSG V
Sbjct: 248 FDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWV 307
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+IFN M+ ++ ++PK C+ M + D V+WG L+
Sbjct: 308 TEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLG 367
Query: 142 SCQVHSNVRLAKK 154
+C++H + L +K
Sbjct: 368 ACRLHGKIALGEK 380
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
GV WN MI GY +N +A+ L++ ++ + K + VT +++L+ C G
Sbjct: 155 GVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLG 204
>gi|222625627|gb|EEE59759.1| hypothetical protein OsJ_12247 [Oryza sativa Japonica Group]
Length = 950
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++VL +CA L SL +G+ + +I+K G IFVG+A ++Y G
Sbjct: 508 PGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRV 567
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V W MI G AEN + E++I L++D+I++G+ + TF+AIL CSHSGLV
Sbjct: 568 FYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLV 627
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL---------MPYKDDLVV----------WGDLVS 141
+ F M+ + PK C+ + +DL++ W L+S
Sbjct: 628 EHAMHYFEMMQA-CGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLS 686
Query: 142 SCQVHSNVRLAKKAA 156
+C ++ N + ++AA
Sbjct: 687 ACNIYRNKEMGERAA 701
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 17/95 (17%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F++VL +CA L L GR+I + +K N++FV SA I++YC C
Sbjct: 381 FSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP 440
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGV 85
V WN +I GY+ N + +A L+K + A V
Sbjct: 441 QKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNV 475
>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 783
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TT+LS+CA+L SL G+ + I + +I+V +A +++Y CG
Sbjct: 409 PNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQL 468
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN MI GY + Y +A+ LY +++ G VTF+++L CSH+GLV
Sbjct: 469 FDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLV 528
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
EIF++M + + ++P C+ MP + VWG L+
Sbjct: 529 GEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLG 588
Query: 142 SCQVHSNVRLAKKAA 156
+C +H + +A+ A+
Sbjct: 589 ACMIHKDTDIARLAS 603
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 20/111 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F + +++C+ L L + + DGYG+++FVGSA +++YC
Sbjct: 109 PDNFTYAFAVAACSNDKHLML---LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKV 165
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V WN MI+G +N + +I L+++++A GV+ D T A+L
Sbjct: 166 FDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVL 216
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GY +N E AISL+K+++ + + VT IL+ C+ G
Sbjct: 377 VAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLG 425
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 20/113 (17%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
T VL + A+L L +G I +K G+G +V + I++Y CG
Sbjct: 213 TAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINR 272
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL---TPCSH 101
+ +N MI G+ N E ++ L+++++ SG + T V ++ +P H
Sbjct: 273 PDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGH 325
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 94/194 (48%), Gaps = 41/194 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P + T LS+CA L SL G + I K +D+FVG++ I++YC CGV
Sbjct: 342 VKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKAL 401
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+W +I G A N + E A++++ ++ G+ TFV +L C+H G
Sbjct: 402 QVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVG 461
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV VE F SME+ + + P+ C+ MP D+V+W L
Sbjct: 462 LVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRIL 521
Query: 140 VSSCQVHSNVRLAK 153
+S+C++H N+ LA+
Sbjct: 522 LSACKLHGNLVLAE 535
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F + SCA++S + G+ + +K G+ + +FV +A I++Y G
Sbjct: 112 SHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVF 171
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFV-AILTPC 99
V+WN +I GY + ++ + L++++ A V+ D VT + AI C
Sbjct: 172 DGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATC 225
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI GY+ + +A+ L+++++ S VK D +T L+ C+H G
Sbjct: 312 ISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLG 360
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+ WN MIHG ++++ AI Y + G++ +TF+ + C+
Sbjct: 79 LVWNHMIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCAR 125
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + VLS+C + +L GR + + I +G G ++ VG++ I++Y CG
Sbjct: 68 VRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDAR 127
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN M+ GYA + + + A+ L+K++ G + +TF+ +L CSH+G
Sbjct: 128 LVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAG 187
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F SM+ ++ ++PK C+ M D V+WG L
Sbjct: 188 LVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTL 247
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N+ L ++ A
Sbjct: 248 LGACRLHGNIALGEQIA 264
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN MI GYA++ + + L++ ++ + V+ + VT +A+L+ C +G
Sbjct: 38 ICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQTG 86
>gi|108710611|gb|ABF98406.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 787
Score = 96.7 bits (239), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++VL +CA L SL +G+ + +I+K G IFVG+A ++Y G
Sbjct: 508 PGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRV 567
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V W MI G AEN + E++I L++D+I++G+ + TF+AIL CSHSGLV
Sbjct: 568 FYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLV 627
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL---------MPYKDDLVV----------WGDLVS 141
+ F M+ + PK C+ + +DL++ W L+S
Sbjct: 628 EHAMHYFEMMQA-CGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLS 686
Query: 142 SCQVHSNVRLAKKAA 156
+C ++ N + ++AA
Sbjct: 687 ACNIYRNKEMGERAA 701
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 17/95 (17%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F++VL +CA L L GR+I + +K N++FV SA I++YC C
Sbjct: 381 FSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP 440
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGV 85
V WN +I GY+ N + +A L+K + A V
Sbjct: 441 QKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNV 475
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F T++ + + L++L G+QI +VK Y D FVG++ +++YC CG
Sbjct: 1196 VQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAY 1255
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN M+ G A++ +V++A++L++ + ++G++ D VTF+ +L+ CSHSG
Sbjct: 1256 RVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSG 1315
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L + F++M + + P+ CL MP+K ++ L
Sbjct: 1316 LFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRAL 1375
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ + AK+ A
Sbjct: 1376 LGACRTKGDAETAKRVA 1392
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+ T + + L +L G+QI +K G+ ND++V S +++Y CG
Sbjct: 1099 EITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFG 1158
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W MI GY EN + A+S+Y + SGV+ D TF ++ S
Sbjct: 1159 EISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASS 1211
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV--------------- 55
+LS+ L LG QI ++K + + V ++ +N+Y GV
Sbjct: 900 ILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELD 959
Query: 56 --TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+WN MI YA+N +AI ++D++ G+K D T ++L CS
Sbjct: 960 LISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
Query: 32 VKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQAI 74
VK G+ D+FV A +NIYC G V WN M+ Y EN + ++A+
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803
Query: 75 SLYKDIIASGVKHD 88
+ SG D
Sbjct: 804 RFFSAFHRSGFXPD 817
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 20/114 (17%)
Query: 3 PTQFPFTTVLSSCAKLSS---LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
P QF +VL +C+ LG Q+ +K G ND FV +A I++Y G
Sbjct: 993 PDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+WN ++ GY ++ +A+ + + G+ D +T +
Sbjct: 1053 EFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAI 1106
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 96.3 bits (238), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F T++ + + L++L G+QI +VK Y D FVG++ +++YC CG
Sbjct: 1196 VQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAY 1255
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN M+ G A++ +V++A++L++ + ++G++ D VTF+ +L+ CSHSG
Sbjct: 1256 RVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSG 1315
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L + F++M + + P+ CL MP+K ++ L
Sbjct: 1316 LFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRAL 1375
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ + AK+ A
Sbjct: 1376 LGACRTKGDAETAKRVA 1392
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 17/113 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+ T + + L +L G+QI +K G+ ND++V S +++Y CG
Sbjct: 1099 EITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFG 1158
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W MI GY EN + A+S+Y + SGV+ D TF ++ S
Sbjct: 1159 EISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASS 1211
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV--------------- 55
+LS+ L LG QI ++K + + V ++ +N+Y GV
Sbjct: 900 ILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELD 959
Query: 56 --TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+WN MI YA+N +AI ++D++ G+K D T ++L CS
Sbjct: 960 LISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 17/70 (24%)
Query: 32 VKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQAI 74
VK G+ D+FV A +NIYC G V WN M+ Y EN + ++A+
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803
Query: 75 SLYKDIIASG 84
+ SG
Sbjct: 804 RFFSAFHRSG 813
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 20/114 (17%)
Query: 3 PTQFPFTTVLSSCAKLSS---LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
P QF +VL +C+ LG Q+ +K G ND FV +A I++Y G
Sbjct: 993 PDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+WN ++ GY ++ +A+ + + G+ D +T +
Sbjct: 1053 EFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAI 1106
>gi|414881615|tpg|DAA58746.1| TPA: hypothetical protein ZEAMMB73_747934 [Zea mays]
Length = 536
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 59/190 (31%), Positives = 91/190 (47%), Gaps = 43/190 (22%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYG-NDIFVGSAPINIYCNCG------------ 54
+TTVL C+ L+ L GRQ+ R VKDG+G +++FV ++ I++Y +CG
Sbjct: 298 YTTVLHICSVLALLAFGRQVHARAVKDGFGRSNVFVSNSLISMYSSCGATLDLEQVLEEM 357
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEV 109
V+WN I G +N QA++ + + G+ ++G TF+AILT CSH+G+V +
Sbjct: 358 AVRDVVSWNSAIQGLGQNGLGRQALAAGERALELGM-YNGNTFIAILTSCSHAGMVVEGL 416
Query: 110 EIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVSSCQV 145
F++M H V+P MP+ D V W L+ SC
Sbjct: 417 SYFDAMAKKHGVEPTLDHYISVIDLLGRAGRLQDAYDLLRKMPFAPDAVAWRTLLHSCLA 476
Query: 146 HSNVRLAKKA 155
H N + A
Sbjct: 477 HKNTAVGSIA 486
>gi|297823557|ref|XP_002879661.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325500|gb|EFH55920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 500
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 98/196 (50%), Gaps = 43/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + FT +LS+C +L GR + + ++ G + + + ++ I++YC CG
Sbjct: 219 PNDYTFTALLSACTGSGALGQGRSVHCQTLQMGLKSYLHISNSLISMYCKCGDLKDAFRI 278
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDII-ASGVKHDGVTFVAILTPCSHSGL 104
V+WN MI GYA+ QAI L++ ++ SG+K D +T++ +L+ C H+GL
Sbjct: 279 FDQFSNKDVVSWNSMIAGYAQYGLATQAIELFELMMPKSGIKPDAITYLGLLSSCRHAGL 338
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V + FN M + +KP+ CL MP K + V+WG L+
Sbjct: 339 VIEGRKFFNLMA-ERGLKPELNHYSCLVDLLGRFGLLQEALELIENMPMKPNSVIWGSLL 397
Query: 141 SSCQVHSNVRLAKKAA 156
SC+VH +V + +AA
Sbjct: 398 FSCRVHGDVWMGIRAA 413
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ ++ + SC G +K G+ +D+++GS+ + +Y + G
Sbjct: 121 YGLSSAVRSCGSNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAHKVFAE 180
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI G+A+ V+ + LY ++ S + TF A+L+ C+ SG
Sbjct: 181 MPDNNVVSWTAMISGFAQEWRVDICMKLYSEMRNSTSDPNDYTFTALLSACTGSG 235
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 95/193 (49%), Gaps = 41/193 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +VLS+C +L +L GR + + I +G ++ VG+A +++Y CG
Sbjct: 254 PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLV 313
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI GYA + + ++A+ L+K + G+ +TF+ IL+ C HSG V
Sbjct: 314 FDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWV 373
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+IFN M+ ++ ++PK C+ M + D V+WG L+
Sbjct: 374 TEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLG 433
Query: 142 SCQVHSNVRLAKK 154
+C++H + L +K
Sbjct: 434 ACRLHGKIALGEK 446
Score = 42.0 bits (97), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 52/151 (34%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F+++L KL + G+ + ++ VK G+ +D++V + +++Y G
Sbjct: 124 VEPNAFTFSSIL----KLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQ 179
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V WN MI GY +N +
Sbjct: 180 QLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNE 239
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
A+ L++ ++ + K + VT +++L+ C G
Sbjct: 240 ALVLFRRMLKAKAKPNEVTVLSVLSACGQLG 270
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
W +IHG+A EQA++ Y ++ GV+ + TF +IL C
Sbjct: 96 WTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLC 138
>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
Length = 630
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 96/194 (49%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
T+F +++LS+CA L+ + G Q+ IVK G+ ++FV ++ +++Y CG
Sbjct: 257 TEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVF 316
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V WN MI ++ + + +A+ L++ + G+ + VT+++IL+ CSH+GLV
Sbjct: 317 ADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVE 376
Query: 107 AEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDLVSS 142
FN + D +P L MP++ +WG L+ S
Sbjct: 377 EGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGS 436
Query: 143 CQVHSNVRLAKKAA 156
++H N+RLA+ AA
Sbjct: 437 SRIHKNIRLARIAA 450
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
T+F ++ L +CA ++ +Q+ T +K + FVG+A +++Y C
Sbjct: 156 TEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVF 215
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
VTW+ + G+ +N E+ + L++ G++ T +IL+ C+ L+
Sbjct: 216 ENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALII 275
Query: 107 AEVEI 111
++
Sbjct: 276 EGTQV 280
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 17/112 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F +L CAK SL +G+ + G D + IN+Y CG
Sbjct: 57 FTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDA 116
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN MI GY N +A+ L+ + G + T + L C+
Sbjct: 117 MSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACA 168
>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
Length = 687
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+ F +VL++C +SL G+ I + V+ G +D+ V +A N+Y CG
Sbjct: 315 KVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFD 374
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+WN M+ YA++ E+ + L + + GVK +G+TFV++L+ CSH+GL+
Sbjct: 375 SMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAE 434
Query: 108 EVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSC 143
+ F+S+ HD ++ K CL MP + ++V W L+ +C
Sbjct: 435 GCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGAC 494
Query: 144 QVHSNVRLAKKAA 156
+VH ++ K AA
Sbjct: 495 RVHKDLDRGKLAA 507
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
F VL+S +L G+ I + + + + D+FV +A +N Y CG
Sbjct: 13 FLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMP 72
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
TWN MI Y+ +E +A +++ + G + D VTF++IL C
Sbjct: 73 CRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDAC 121
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+ F ++L +C +L G+ + I + + D+FVG+A I +Y C
Sbjct: 111 RVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFG 170
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+TW+ +I +A++ + +A+ ++ + G+ + VTF+++L
Sbjct: 171 RMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLL 219
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 19/121 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
+ P + F ++L+ S L +I I + G + + +A +N+Y C
Sbjct: 208 ILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDV 267
Query: 56 --------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
WN +I+GY + +A+ Y+ + + D VTF+++L C+
Sbjct: 268 AEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTS 327
Query: 102 S 102
S
Sbjct: 328 S 328
>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g57430, chloroplastic-like [Cucumis sativus]
Length = 863
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F F+++ ++CA LS+ G+QI ++K G +D+F G++ +N+Y CG
Sbjct: 487 IKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDAS 546
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W+ MI G A++ + +A+ L+ ++ +G+ + +T V++L+ C+H+G
Sbjct: 547 CIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAG 606
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F ME + P C+ MP++ VWG L
Sbjct: 607 LVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGAL 666
Query: 140 VSSCQVHSNVRLAKKAA 156
+ + ++H N+ L + AA
Sbjct: 667 LGAARIHKNIELGRHAA 683
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 17/119 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P+ F ++ L +CA + + LGRQ+ + ++K D FVG I++Y CG
Sbjct: 285 VAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDAR 344
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+ WN +I GY+ Y +A+SL+ ++ G++ + T IL + S
Sbjct: 345 MVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGS 403
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 41/181 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F +TVL++CA L G ++ ++K GY +D F +A +++Y G
Sbjct: 184 ISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAI 243
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G +E + A+ L + + V T + L C+ G
Sbjct: 244 AVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIG 303
Query: 104 LVYAEVEIFNS-----MEHDH-------EVKPKC-----------LMPYKDDLVVWGDLV 140
LV ++ ++ ME D ++ KC LMP K D++VW ++
Sbjct: 304 LVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXK-DVIVWNSII 362
Query: 141 S 141
S
Sbjct: 363 S 363
Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W+ +I GY +N E+A+ Y ++ G K + TF ++L CS
Sbjct: 114 VSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCS 159
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 103/200 (51%), Gaps = 44/200 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG----- 54
+ P + VLS+CA+L + LG+++ + +++G + + + +A +++Y CG
Sbjct: 343 IKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSA 402
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+N MI G A++ E AI++++++I++G+K D VTFV +L C
Sbjct: 403 LEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACG 462
Query: 101 HSGLVYAEVEIFNSMEHDHEVKPK---------------CL---------MPYKDDLVVW 136
HSGL+ ++F SM + + +KP+ CL MP++ + V+W
Sbjct: 463 HSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIW 522
Query: 137 GDLVSSCQVHSNVRLAKKAA 156
L+S+C+ H NV++ + A
Sbjct: 523 RALLSACRTHGNVKIGEIAG 542
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F +L+SCA+LSSL G ++ + I+K G+ +D+FV +A I++Y G
Sbjct: 109 PNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTL 168
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V++N MI GYAE E A+ L+ ++ SG+ D TFVA+ + CS
Sbjct: 169 FDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCS 223
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 64/154 (41%), Gaps = 51/154 (33%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKD--GYGNDIFVGSAPINIYCNCG---- 54
+ P +F F + S C+ L+ +G+QI ++ K+ ++I + SA +++Y CG
Sbjct: 208 ILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINI 267
Query: 55 ---------------------------------------------VTWNEMIHGYAENEY 69
++W MI GY++
Sbjct: 268 AERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQ 327
Query: 70 VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+A+ L+K++ A G+K D VT VA+L+ C+ G
Sbjct: 328 CSEALELFKEMEALGIKPDEVTLVAVLSACARLG 361
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 15/123 (12%)
Query: 33 KDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVK-HDGVT 91
KDG + + S I C WN MI GY+ ++ +AI LY +IA G+ + T
Sbjct: 57 KDGLDHSRLLFS---QIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFT 113
Query: 92 FVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLM-PYKDDLVVWGDLVSSCQVHSNVR 150
F +L C+ +S+E HEV + ++ DL V L+ V N+
Sbjct: 114 FPFLLNSCAR----------LSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLN 163
Query: 151 LAK 153
LA+
Sbjct: 164 LAR 166
>gi|356558692|ref|XP_003547637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g17630-like [Glycine max]
Length = 696
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 99/189 (52%), Gaps = 41/189 (21%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
++VLS CA+L++L LGR++ +++ ++I VG+ IN+Y CG
Sbjct: 414 SSVLSVCAELAALNLGRELHGYAIRNMMSDNILVGNGLINMYMKCGDFKEGHLVFDNIEG 473
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
++WN +I GY + E A+ + ++I + +K D +TFVAIL+ CSH+GLV A +
Sbjct: 474 RDLISWNSLIGGYGMHGLGENALRTFNEMIRARMKPDNITFVAILSACSHAGLVAAGRNL 533
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F+ M + ++P C+ MP + + VWG L++SC+++
Sbjct: 534 FDQMVTEFRIEPNVEHYACMVDLLGRAGLLKEATDIVRNMPIEPNEYVWGALLNSCRMYK 593
Query: 148 NVRLAKKAA 156
++ + ++ A
Sbjct: 594 DMDIVEETA 602
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F V+ +C+ L S +L R + ++ G+ N + V + + +Y G
Sbjct: 130 PDGFTLPLVIRACSSLGSSYLCRIVHCHALQMGFRNHLHVVNELVGMYGKLGRMEDARQL 189
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN M+ GYA N A ++K + G++ + VT+ ++L+ + GL
Sbjct: 190 FDGMFVRSIVSWNTMVSGYALNRDSLGASRVFKRMELEGLQPNSVTWTSLLSSHARCGLY 249
Query: 106 YAEVEIFNSME 116
+E+F M
Sbjct: 250 DETLELFKVMR 260
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 23/133 (17%)
Query: 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------ 54
VLS CA ++ + G++I +VK GY + +FV +A I Y
Sbjct: 270 ALAVVLSVCADMAEVDWGKEIHGYVVKGGYEDYLFVKNALIGTYGKHQHMGDAHKVFLEI 329
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASG------VKHDGVTFVAILTPCSHSG 103
V+WN +I YAE+ ++A + + + S V+ + +++ A+++ ++ G
Sbjct: 330 KNKNLVSWNALISSYAESGLCDEAYAAFLHMEKSDSDDHSLVRPNVISWSAVISGFAYKG 389
Query: 104 LVYAEVEIFNSME 116
+E+F M+
Sbjct: 390 RGEKSLELFRQMQ 402
>gi|356564808|ref|XP_003550640.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Glycine max]
Length = 501
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 100/197 (50%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +T++LS+C +L GR +I++ G+ + + + +A I++Y CG
Sbjct: 204 LRPNYFTYTSLLSACMGSGALGHGRCAHCQIIRMGFHSYLHIENALISMYSKCGAIDDAL 263
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI GYA++ ++AI+L++++I GV D VT++ +L+ C H G
Sbjct: 264 HIFENMVSRDVVTWNTMISGYAQHGLAQEAINLFEEMIKQGVNPDAVTYLGVLSSCRHGG 323
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV FNSM +H V+P C+ MP + VVWG L
Sbjct: 324 LVKEGQVYFNSMV-EHGVQPGLDHYSCIVDLLGRAGLLLEARDFIQNMPIFPNAVVWGSL 382
Query: 140 VSSCQVHSNVRLAKKAA 156
+SS ++H +V + +AA
Sbjct: 383 LSSSRLHGSVPIGIEAA 399
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F + +SSC L+ G Q + G+ ++VGS+ I++Y C
Sbjct: 108 FFLSQAVSSCGSKRDLWGGIQYHCLAITTGFVASVYVGSSLISLYSRCAFLGDACRVFEE 167
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G+A+ +V+ + L++ + S ++ + T+ ++L+ C SG
Sbjct: 168 MPVRNVVSWTAIIAGFAQEWHVDMCLELFQQMRGSDLRPNYFTYTSLLSACMGSG 222
>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
Length = 1005
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P F +VL + A L++ G I++ G+ ++ VG++ I++Y CG
Sbjct: 630 HPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEK 689
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+WN M+ GYA + + ++AI+L+ + S V+ D V+FV++L+ C H GL
Sbjct: 690 LFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGL 749
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V +IF+SM + +KP C+ MP + D VWG L+
Sbjct: 750 VEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALL 809
Query: 141 SSCQVHSNVRLAKKA 155
SC++HSNV+L + A
Sbjct: 810 GSCRMHSNVKLGEVA 824
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + ++L +CA LS L LG+ I VK +D+ G+A +++Y CG
Sbjct: 428 PNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTT 487
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTWN +I+GYA+ AI ++ + S + D T V ++ C+
Sbjct: 488 FNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACA 542
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P V+ +CA L+ L G I IVK G+ +D V +A I++Y CG
Sbjct: 527 INPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAE 586
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTWN +I Y +N + ++AIS + + + VTFV++L ++
Sbjct: 587 FLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAY 645
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++ FT VL +C +L G I + G D+F+G+ +++Y G
Sbjct: 127 PDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREV 186
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V WN MI G +++E +A+ ++ + GV+ V+ + +
Sbjct: 187 FDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLF 237
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 21/117 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY-----CNCG- 54
Y + +LSSC L+ L QI +I+ G+ + + + IN+Y C+
Sbjct: 28 TYTNYLHYPRLLSSCKHLNPLL---QIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLAR 83
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ WN MI Y ++ +A+ +Y ++ G++ D TF +L C+
Sbjct: 84 SVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACT 140
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAE 66
G++I ++ +DI V + + +Y CG V W+ +I +
Sbjct: 348 GKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQ 407
Query: 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
Y E+A+SL++++ +K + VT ++IL C+ L+
Sbjct: 408 TGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLL 446
>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
Length = 924
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 95/187 (50%), Gaps = 41/187 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F ++TVL +CA L+S+ LG+QI ++K D+++ S +++Y CG
Sbjct: 607 ITPDKFTYSTVLDTCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSR 666
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI GYA + E+AI L++ ++ + + TFV++L C+H G
Sbjct: 667 LMFEKAPIRDFVTWNAMICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRACAHMG 726
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDL 139
LV ++ F+ M+ ++ + P+ MP++ D V+W L
Sbjct: 727 LVERGLDYFHMMKKEYGLDPRLEHYSNMVDILGKSGEVEKALELIQEMPFEADDVIWRTL 786
Query: 140 VSSCQVH 146
+S+C+++
Sbjct: 787 LSACKIN 793
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 45/143 (31%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++ F +VL +CA SL G +I T IVK G ++ ++GS+ +++Y CG
Sbjct: 482 PDEYTFGSVLKACAG-DSLNHGMEIHTTIVKLGMASNPYIGSSLVDMYSKCGMIDEAEKI 540
Query: 55 ------------------------------------VTWNEMIHGYAENEYVEQAISLYK 78
V+WN +I GY + E A +
Sbjct: 541 HNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFN 600
Query: 79 DIIASGVKHDGVTFVAILTPCSH 101
++ G+ D T+ +L C++
Sbjct: 601 RMMEMGITPDKFTYSTVLDTCAN 623
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F+ +L C+ L + LG QI ++ GY D+ GSA +++Y C
Sbjct: 184 FSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCKRLDESFTVFYAMP 243
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++W+ +I G +N +++ + ++K++ GV + ++L C+
Sbjct: 244 QKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLKSCA 293
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC----------- 53
+ + L +CA + L G Q+ K + +I V +A I++Y C
Sbjct: 383 EISLSGALRACATVKGLSEGLQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFD 442
Query: 54 ------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+WN +I + +NE + +++ ++ SG++ D TF ++L C+ L
Sbjct: 443 EMGRKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAGDSL 499
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 48/141 (34%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F+ V CAK + LG+Q ++ G+ +FV + + +Y NCG
Sbjct: 52 FSFVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCGNLGYATKLFDGMP 111
Query: 55 ----VTWNEMIHGY-AENEYVE------------------------------QAISLYKD 79
V+WN MI GY A N+ V +++ ++ +
Sbjct: 112 LRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFIE 171
Query: 80 IIASGVKHDGVTFVAILTPCS 100
+ SGV+ D +F IL CS
Sbjct: 172 MGRSGVEFDNKSFSVILKVCS 192
>gi|62733531|gb|AAX95648.1| Tetratricopeptide repeat, putative [Oryza sativa Japonica Group]
Length = 888
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++VL +CA L SL +G+ + +I+K G IFVG+A ++Y G
Sbjct: 508 PGEITFSSVLLACASLCSLEMGKMVHAKIIKLGIKESIFVGTALSDMYAKSGDLDSSKRV 567
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V W MI G AEN + E++I L++D+I++G+ + TF+AIL CSHSGLV
Sbjct: 568 FYEMPKRNDVAWTAMIQGLAENGFAEESILLFEDMISAGITPNEQTFLAILFACSHSGLV 627
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL---------MPYKDDLVV----------WGDLVS 141
+ F M+ + PK C+ + +DL++ W L+S
Sbjct: 628 EHAMHYFEMMQA-CGISPKAKHYTCMVDVLARAGHLAEAEDLLLKIESKSEANSWAALLS 686
Query: 142 SCQVHSNVRLAKKAA 156
+C ++ N + ++AA
Sbjct: 687 ACNIYRNKEMGERAA 701
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 17/95 (17%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F++VL +CA L L GR+I + +K N++FV SA I++YC C
Sbjct: 381 FSSVLGACASLQDLRSGRKIHNQTLKMACSNNVFVSSALIDMYCKCKQLPDAQMIFYSLP 440
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGV 85
V WN +I GY+ N + +A L+K + A V
Sbjct: 441 QKNIVCWNSLISGYSNNSKMVEAEELFKKMPARNV 475
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P +L +CA LS+L G++I I+++GY +D V +A +++Y CGV
Sbjct: 430 PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 489
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+W MI GY + Y +AI+ + ++ +G++ D V+F++IL CSHSGL+
Sbjct: 490 FDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F M++D ++PK C+ +P D +WG L+
Sbjct: 550 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLC 609
Query: 142 SCQVHSNVRLAKKAA 156
C+++ ++ LA+K A
Sbjct: 610 GCRIYHDIELAEKVA 624
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+VL CA +L LG+ + + +K + I + +++Y CG
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 315
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY + + AI L + + GVK D V +IL C+ SG
Sbjct: 316 NVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSG 366
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GY N E+ + +YK ++ G+ D T +++L C++SG
Sbjct: 217 ISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSG 265
>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Vitis vinifera]
Length = 829
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV--------- 55
+ F+ VL SC+ L++L LG+Q+ ++K G+ + FV S+ I +Y CGV
Sbjct: 406 HYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFD 465
Query: 56 --------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
WN +I GYA++ + A+ L+ + VK D +TFVA+LT CSH GLV
Sbjct: 466 ATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEE 525
Query: 108 EVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSC 143
SME D+ + P+ C+ MP++ D +VW L+ +C
Sbjct: 526 GWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGAC 585
Query: 144 QVHSNVRLAKKAA 156
+ ++ LA + A
Sbjct: 586 RTCGDIELASQVA 598
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------------ 53
+ F ++L A + + +G+Q+ + +VK GY ++F GSA +++Y C
Sbjct: 101 YSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKS 160
Query: 54 -----GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF 92
VTWN +I GYA+ A L + GV+ D TF
Sbjct: 161 INIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTF 204
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 21/102 (20%)
Query: 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------------VTWNEMIHGY 64
L Q+ +IVK G +D V +A I Y CG VTWN M+ Y
Sbjct: 219 LTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAY 278
Query: 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC---SHSG 103
N E+A L+ ++ G + D T+ ++++ SH G
Sbjct: 279 LVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQG 320
>gi|330689867|gb|AEC33263.1| putative pentatricopeptide protein [Triticum aestivum]
Length = 644
Score = 96.3 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 41/192 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TVLS+C + ++ LGR++ ++ V + IN+Y CG
Sbjct: 349 PNVVTLATVLSACTEQLAVRLGREVHADAIRSMVDRHSLVANGLINMYAKCGRVADARTV 408
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN M+ GY + + A++++ D+ + V DGVTFVA+L+ CSH+G V
Sbjct: 409 FDGMKSRDLVSWNSMLAGYGMHGLCDDALAVFTDMAEAKVDPDGVTFVAVLSACSHAGRV 468
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+F+ M +H++ P C+ MP DL VWG L++
Sbjct: 469 SEGRRLFDQMILEHKISPSMEHYTCMVDLLGRAGLLKEASEFIETMPMGADLCVWGALLN 528
Query: 142 SCQVHSNVRLAK 153
SC++H + +A+
Sbjct: 529 SCRIHGDAAMAE 540
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 93/198 (46%), Gaps = 44/198 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T+ +S+CA++ SL R + + + Y +D+F+ SA I+++ CG
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGAR 378
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ MI GY + +AISLY+ + GV + VTF+ +L C+HSG
Sbjct: 379 LVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSG 438
Query: 104 LVYAEVEIFNSMEHDHEVKP-------------------------KCLMPYKDDLVVWGD 138
+V FN M DH++ P KC MP + + VWG
Sbjct: 439 MVREGWWFFNLMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKC-MPVQPGVTVWGA 496
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+S+C+ H +V L + AA
Sbjct: 497 LLSACKKHRHVELGEYAA 514
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 19/116 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F +L +C+ LS L +GR + ++ + G+ D+FV + I +Y C
Sbjct: 115 VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSAR 174
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+W ++ YA+N +A+ ++ + VK D V V++L
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLN 230
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +VL++ L L GR I +VK G + + + +Y CG
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN MI GYA+N Y +AI ++ ++I V+ D ++ + ++ C+ G
Sbjct: 278 ILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIF 112
WN +I GY+ N + + A+ +Y ++ + V D TF +L C SGL + ++ F
Sbjct: 87 WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKAC--SGLSHLQMGRF 140
>gi|302797857|ref|XP_002980689.1| hypothetical protein SELMODRAFT_32021 [Selaginella moellendorffii]
gi|300151695|gb|EFJ18340.1| hypothetical protein SELMODRAFT_32021 [Selaginella moellendorffii]
Length = 408
Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 97/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F L +C+ +L G+ + + I++ GY +D+ VG+A +N+Y CG
Sbjct: 204 PDKASFVAALDACSNSLALKQGKLLHSGILEHGYESDLVVGTALVNMYGKCGSLDSALEF 263
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TWN M+ +AEN + +A +Y+++ GV D VTF+++L SH+GLV
Sbjct: 264 FQGMKKRNFITWNAMMGSFAENGHGMRACGVYREMEQEGVLSDQVTFLSVLFASSHAGLV 323
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+E ++S++ D+ ++P +C+ MP++ D W L+
Sbjct: 324 TDALEFYHSLQDDYGLRPGLEHYRCIVDLLGRLGQLEDSEEVLSYMPFEPDAAAWMALLG 383
Query: 142 SCQVHSNVRLAKKAA 156
SC++H +V + A
Sbjct: 384 SCKIHGDVGRGGRVA 398
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
+ WN MI YA N + +A+ L+ + SG+K D +FVA L CS+S L + ++ +S
Sbjct: 172 ILWNAMISAYALNGFNTEALELFWKLSHSGMKPDKASFVAALDACSNS-LALKQGKLLHS 230
Query: 115 --MEHDHE 120
+EH +E
Sbjct: 231 GILEHGYE 238
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 24/140 (17%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN--DIFVGSAPINIYCNCGVTWNEMIH 62
+ F TV+ +C L FL + I + I + D ++ +N+Y CG
Sbjct: 63 EISFLTVIDACTNLGEFFLAKGIHSSIEDSALSSRLDSMAFTSIVNMYGKCG-------- 114
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
VE A +++ I ++HD V++ AI+T S +G +E+F M
Sbjct: 115 ------RVEDARRVFEGIPL--LEHDVVSWTAIITVYSQNGEAKRAIELFRIM------G 160
Query: 123 PKCLMPYKDDLVVWGDLVSS 142
K D+++W ++S+
Sbjct: 161 KLSREDEKGDVILWNAMISA 180
Score = 39.3 bits (90), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 36/62 (58%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+WN ++ YA+N + + A+ L+ + GV D ++F+ ++ C++ G + I +S
Sbjct: 29 VSWNSLMAAYAQNGHCKDAVHLFTIMDLEGVDIDEISFLTVIDACTNLGEFFLAKGIHSS 88
Query: 115 ME 116
+E
Sbjct: 89 IE 90
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +L +CA L++L G++I I+++G+ D V +A +++Y CG
Sbjct: 450 PNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLL 509
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI GY + Y +AI+ + ++ SG++ D V+F++IL CSHSGL+
Sbjct: 510 FDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLL 569
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVS 141
FN M ++ ++PK +MP + D +WG L+
Sbjct: 570 DEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLC 629
Query: 142 SCQVHSNVRLAKKAA 156
C+++ +V+LA+K A
Sbjct: 630 GCRIYHDVKLAEKVA 644
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 18/117 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F TT+L +CA L G+ + I ++ +D+FV +A +++Y CG
Sbjct: 348 ISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAH 407
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN MI GY++N +A++L+ ++ + K + +T IL C+
Sbjct: 408 SVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACA 463
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+V++ C+ L LGR + +K +G ++ + + +++Y G
Sbjct: 254 MVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMG 313
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+W MI GYA + ++ L+ ++ G+ D T IL C+ +GL+ +
Sbjct: 314 ERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKD 373
Query: 111 IFNSMEHD 118
+ N ++ +
Sbjct: 374 VHNYIKEN 381
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN MI GY N E+ + L++ ++ G+ D T V+++ CS++G++
Sbjct: 217 ISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGML 267
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 17/97 (17%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +VL CA L S+ GR+I + I + D +GS + +Y CG
Sbjct: 104 YCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVA 163
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH 87
WN +++GYA+ +++SL+K + G++
Sbjct: 164 NEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRR 200
>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV--------- 55
+ F+ VL SC+ L++L LG+Q+ ++K G+ + FV S+ I +Y CGV
Sbjct: 305 HYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFD 364
Query: 56 --------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
WN +I GYA++ + A+ L+ + VK D +TFVA+LT CSH GLV
Sbjct: 365 ATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEE 424
Query: 108 EVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSC 143
SME D+ + P+ C+ MP++ D +VW L+ +C
Sbjct: 425 GWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGAC 484
Query: 144 QVHSNVRLAKKAA 156
+ ++ LA + A
Sbjct: 485 RTCGDIELASQVA 497
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------------ 53
+ F ++L A + + +G+Q+ + +VK GY ++F GSA +++Y C
Sbjct: 101 YSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKS 160
Query: 54 -----GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF 92
VTWN +I GYA+ A L + GV+ D TF
Sbjct: 161 INIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTF 204
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 20/98 (20%)
Query: 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIH 62
L Q+ +IVK G +D V +A I Y CG V+WN ++
Sbjct: 219 LTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILT 278
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
G++++ E A+ ++++ + V D F A+L CS
Sbjct: 279 GFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCS 316
>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Vitis vinifera]
Length = 913
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T +L +CA LS L G++I +++G+ D+FV +A I++Y
Sbjct: 537 VMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAH 596
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI G+A ++AIS++ ++ GV D +TF A+L+ C +SG
Sbjct: 597 KVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSG 656
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ + F+SM D+ + P+ C+ MP K D +WG L
Sbjct: 657 LIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGAL 716
Query: 140 VSSCQVHSNVRLAKKAA 156
+ SC++H N++ A+ AA
Sbjct: 717 LGSCRIHKNLKFAETAA 733
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 26/165 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC-NCGVT----- 56
P T+VL + ++L L +G++ ++++G+ D++VG++ I++Y N +T
Sbjct: 368 PNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAV 427
Query: 57 -----------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
WN ++ GY+ E A+ L + G+K D VT+ +++ + G
Sbjct: 428 FDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCG 487
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVR 150
+ + H+ K L P ++V W L+S N R
Sbjct: 488 KEALAVL------HQTKSLGLTP---NVVSWTALISGSSQAGNNR 523
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------------- 53
++ L +C ++ ++LG +I ++K G+ D+++ A +N Y C
Sbjct: 136 YSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMP 195
Query: 54 ---GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+ WNE I ++E +++ + L++ + S +K + T V +L C G + A +
Sbjct: 196 NPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQ 255
Query: 111 I 111
I
Sbjct: 256 I 256
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
VL +C K+ +L +QI + + G +D+ + + I++Y G
Sbjct: 240 VLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRN 299
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
+WN MI YA ++ A SL+ ++ +S +K D VT+ +L+
Sbjct: 300 TSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLS 343
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 41/187 (21%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
TT+LS+CA+L +L GR + I K G D + +A I++Y CG
Sbjct: 303 TTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGD 362
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
W+ MI G A + + E+AI L+ +I G++ +T++ IL C+HSGLV ++I
Sbjct: 363 KKVFVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQI 422
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
FN M + + KP+ C+ MP K D +W L+S+C++H
Sbjct: 423 FNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLHR 482
Query: 148 NVRLAKK 154
NV L ++
Sbjct: 483 NVELGEQ 489
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 71/158 (44%), Gaps = 35/158 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
VYP F FT V S+C+K + +F G+Q +++K + + ++ ++ Y G
Sbjct: 131 VYPNDFTFTYVFSACSKFNGVFEGKQAHAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVV 190
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN +I+GY ++ +++A L+ ++ + D V++ +L + +
Sbjct: 191 RRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEM----PERDVVSWTIMLVGYADA 246
Query: 103 GLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140
G + +F+ M K +LV W L+
Sbjct: 247 GFLSEASCLFDEMP-------------KRNLVSWSALI 271
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 41/193 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +VLS+C +L +L GR + + I +G ++ VG+A +++Y CG
Sbjct: 201 PNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLV 260
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI GYA + ++A+ L+K + G+ +TF+ IL+ C HSG V
Sbjct: 261 FDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWV 320
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+IFN M+ ++ ++PK C+ M + D V+WG L+
Sbjct: 321 TEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLG 380
Query: 142 SCQVHSNVRLAKK 154
+C++H + L +K
Sbjct: 381 ACRLHGKIALGEK 393
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 60/151 (39%), Gaps = 52/151 (34%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F+++L KL + G+ + ++ VK G+ +D++V + +++Y G
Sbjct: 71 VEPNAFTFSSIL----KLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQ 126
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V WN MI GY +N +
Sbjct: 127 QLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNE 186
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
A+ L++ ++ + K + VT +++L+ C G
Sbjct: 187 ALVLFRRMLKAKAKPNEVTVLSVLSACGQLG 217
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
W +IHG+A EQA++ Y ++ GV+ + TF +IL C
Sbjct: 43 WTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLC 85
>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 606
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 97/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F FT++ ++CA L+ L G+Q+ IV+ G+ ++ + ++ I++Y CG
Sbjct: 309 PNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKL 368
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W M+ GY + Y ++A+ L+ +++ SG++ D + F+ +L CSH+GLV
Sbjct: 369 FCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLV 428
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
++ F SM D+ + P +C+ MP++ D VWG L+
Sbjct: 429 DKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLG 488
Query: 142 SCQVHSNVRLAKKAA 156
+C+ + L AA
Sbjct: 489 ACKAYKLSNLGNLAA 503
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F+ +CA +SS G+QI + K G D V ++ +++YC C
Sbjct: 207 VGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAK 266
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+TWN +I GY ++ E ++SL+ + + G K + TF +I C++
Sbjct: 267 RCFGELTEKNLITWNTLIAGYERSDSSE-SLSLFFQMGSEGYKPNCFTFTSITAACAN 323
>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 737
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 109/202 (53%), Gaps = 46/202 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGN--DIFVGSAPINIYCNCG--- 54
V P+ F +V+ +CA+ + + G+Q+ +I++ D GN +++V +A I++Y CG
Sbjct: 230 VRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMK 289
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTWN +I G+A+N + E+++++++ +I + V+ + VTF+ +L+ C+
Sbjct: 290 SAENLFEMAPMRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGVLSGCN 349
Query: 101 HSGLVYAEVEIFNSMEHDHEVKPKC---------------LMP-----------YKDDLV 134
H+GL +++ + ME + VKPK LM K+ +
Sbjct: 350 HAGLDNEGLQLVDLMERQYGVKPKAEHYALLIDLLGRRNRLMEAMSLIEKVPDGIKNHIA 409
Query: 135 VWGDLVSSCQVHSNVRLAKKAA 156
VWG ++ +C+VH N+ LA+KAA
Sbjct: 410 VWGAVLGACRVHGNLDLARKAA 431
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W ++ G+ N ++A ++K ++ GV+ TFV+++ C+ L+
Sbjct: 200 VSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALI 250
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P +L +CA LS+L G++I I+++GY +D V +A +++Y CGV
Sbjct: 292 PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 351
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+W MI GY + Y +AI+ + ++ +G++ D V+F++IL CSHSGL+
Sbjct: 352 FDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 411
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F M++D ++PK C+ +P D +WG L+
Sbjct: 412 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLC 471
Query: 142 SCQVHSNVRLAKKAA 156
C+++ ++ LA+K A
Sbjct: 472 GCRIYHDIELAEKVA 486
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+VL CAK +L LG+ + + +K + I + +++Y CG
Sbjct: 118 SVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 177
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY + + + AI L + + GVK D V +IL C+ SG
Sbjct: 178 NVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSG 228
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GY N E+ + +YK ++ G+ D T +++L C+ SG
Sbjct: 79 ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSG 127
>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P +L +CA LS+L G++I I+++GY +D V +A +++Y CGV
Sbjct: 430 PDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 489
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+W MI GY + Y +AI+ + ++ +G++ D V+F++IL CSHSGL+
Sbjct: 490 FDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F M++D ++PK C+ +P D +WG L+
Sbjct: 550 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLC 609
Query: 142 SCQVHSNVRLAKKAA 156
C+++ ++ LA+K A
Sbjct: 610 GCRIYHDIELAEKVA 624
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+VL CA +L LG+ + + +K + I + +++Y CG
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 315
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY + + + AI L + + GVK D V +IL C+ SG
Sbjct: 316 NVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSG 366
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GY N E+ + +YK ++ G+ D T +++L C++SG
Sbjct: 217 ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSG 265
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +VL CA L SL G+++ + I + G D +G ++ Y CG
Sbjct: 102 YGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTME 161
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86
WN M+ YA+ +++I L+K ++ G++
Sbjct: 162 KKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE 197
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 95/192 (49%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F + +S+ A +++ G+QI ++K GY ++ + I +Y CG
Sbjct: 618 FTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFE 677
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN MI GY+++ Y +A+SL++++ G+ + VTFV +L+ CSH GLV
Sbjct: 678 MPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEG 737
Query: 109 VEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQ 144
+ F SM +H + PK C+ MP + D ++W L+S+C
Sbjct: 738 LSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACT 797
Query: 145 VHSNVRLAKKAA 156
VH N+ + + AA
Sbjct: 798 VHKNIEIGEFAA 809
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 26/158 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q+ + ++L +C L +L LG QI T+++K G+ +++V S I++Y G
Sbjct: 411 LMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTAR 470
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY +++ +A+ L++++ G++ D + F + ++ C
Sbjct: 471 GILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISAC---- 526
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
A ++ N + H + Y +DL + LVS
Sbjct: 527 ---AGIQALNQGQQIH--AQSYISGYSEDLSIGNALVS 559
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 77/157 (49%), Gaps = 26/157 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT + F++VLS+C K+ LG Q+ IVK G ++ FV +A + +Y G
Sbjct: 209 VIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAE 268
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+++N +I G A+ + ++A+ L++ + +K D VT ++L+ C+ G
Sbjct: 269 QIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVG 328
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140
Y ++ H + +K M DL++ G L+
Sbjct: 329 AGYKGKQL-----HSYVIK----MGMSSDLIIEGSLL 356
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 62/113 (54%), Gaps = 17/113 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F++ +S+CA + +L G+QI + GY D+ +G+A +++Y CG
Sbjct: 519 FSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKID 578
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN +I G+A++ + E+A+ ++ + +GV+ + TF + ++ +++
Sbjct: 579 AKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTA 631
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT-------------- 56
+ C SL +++ RI K G+ + +GS I+IY G
Sbjct: 16 LFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSN 75
Query: 57 ---WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
WN++I G + Q + L+ +I V D TF ++L CS
Sbjct: 76 VSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACS 122
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++LS+CA + + + G+Q+ + ++K G +D+ + + +++Y C
Sbjct: 312 PDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEY 371
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN M+ Y + + ++ ++ + G+ + T+ +IL C+ G
Sbjct: 372 FLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLG 429
>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 594
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 97/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F FT++ ++CA L+ L G+Q+ IV+ G+ ++ + ++ I++Y CG
Sbjct: 309 PNCFTFTSITAACANLAVLSCGQQVHGGIVRRGFDKNVALINSLIDMYAKCGSISDSHKL 368
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W M+ GY + Y ++A+ L+ +++ SG++ D + F+ +L CSH+GLV
Sbjct: 369 FCDMPGRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLV 428
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
++ F SM D+ + P +C+ MP++ D VWG L+
Sbjct: 429 DKGLKYFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFEPDESVWGALLG 488
Query: 142 SCQVHSNVRLAKKAA 156
+C+ + L AA
Sbjct: 489 ACKAYKLSNLGNLAA 503
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F+ +CA +SS G+QI + K G D V ++ +++YC C
Sbjct: 207 VGPNSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAK 266
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+TWN +I GY ++ E ++SL+ + + G K + TF +I C++
Sbjct: 267 RCFGELTEKNLITWNTLIAGYERSDSSE-SLSLFFQMGSEGYKPNCFTFTSITAACAN 323
>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q + ++L + + + +L G +I R++K+ D+FV + I++Y CG
Sbjct: 448 IVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAM 507
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I + + E+A+ L+KD+ A GVK D +TFV++L+ CSHSG
Sbjct: 508 SLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSG 567
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F++M+ ++ +KP C+ MP + D +WG L
Sbjct: 568 LVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTL 627
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C++H N L A+
Sbjct: 628 LAACRIHGNAELGTFAS 644
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 17/104 (16%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
+++L CA+ + + G + ++K G +D+FV +A IN+Y G
Sbjct: 252 SSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEV 311
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95
V+WN +I Y +N+ A+ +K+++ G++ D +T V++
Sbjct: 312 RDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSL 355
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 23/134 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG------- 54
P ++ S +LS +GR + +V+ + DI +G+A +N+Y G
Sbjct: 347 PDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARA 406
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASG---VKHDGVTFVAILTPCSH 101
++WN +I GYA+N +AI Y +++ G V + G T+V+IL SH
Sbjct: 407 VFEQLPSRDVISWNTLITGYAQNGLASEAIDAY-NMMEEGRTIVPNQG-TWVSILPAYSH 464
Query: 102 SGLVYAEVEIFNSM 115
G + ++I +
Sbjct: 465 VGALQQGMKIHGRL 478
>gi|297834310|ref|XP_002885037.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330877|gb|EFH61296.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 690
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 97/187 (51%), Gaps = 41/187 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
TT+L +C+++++L G++I +I+K D+ + ++ +++Y CG
Sbjct: 333 LTTILPACSRVAALITGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGDVEYSRRVFDGML 392
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
TWN +++ YA N +E+ I+L++ +I SGV DG+TFVA+L+ CS +GL +
Sbjct: 393 TKDLTTWNTILNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGIS 452
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
+F M+ + V P CL MP+K +WG L++SC++H
Sbjct: 453 LFERMKTEFRVSPALEHYACLVDILGRAGKIEEAVKVIETMPFKPSASIWGSLLNSCRLH 512
Query: 147 SNVRLAK 153
NV + +
Sbjct: 513 GNVSVGE 519
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 52/140 (37%), Gaps = 18/140 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F + L +C L L +GR I +IVK D V + + +Y G
Sbjct: 225 IEPGNFSISVALKACVDLKDLRVGRGIHGQIVKRKEKVDQVVYNVLLKLYMERGSFDDAR 284
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN +I ++ V + +L++ + + T IL CS
Sbjct: 285 KVFDGMSERNIVTWNSLISILSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVA 344
Query: 104 LVYAEVEIFNSMEHDHEVKP 123
+ EI + E KP
Sbjct: 345 ALITGKEIHAQILKSKE-KP 363
>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
sativa Japonica Group]
gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 702
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++VLSSCA ++SL G Q +K G ++I G+A IN+Y CG
Sbjct: 410 PNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLA 469
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN +IHG+A++ +A+ ++ + ++G+K D TF+ +L C+HSG+V
Sbjct: 470 FDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMV 529
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
F M + P C+ MP++ D ++W L++
Sbjct: 530 EEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLA 589
Query: 142 SCQVHSNVRLAKKAA 156
SC++H N+ + K AA
Sbjct: 590 SCKLHRNLDIGKLAA 604
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F L +CA L +L G Q+ + V+ G+ D ++GS I +Y CG
Sbjct: 110 VAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAK 169
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V + +I + N E A ++ G+K + T ILT C
Sbjct: 170 EVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC 225
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 23/121 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKD--GYGNDIFVGSAPINIYCNCG------ 54
P + TT+L++C ++ LG+QI ++K ++ +A I+ Y G
Sbjct: 213 PNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAK 268
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W M+ Y + +E+A+ ++ D+I+ GV + +L C G
Sbjct: 269 AVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIG 328
Query: 104 L 104
L
Sbjct: 329 L 329
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 13 SSCAKLSSLFLGRQILTRIVKDGY---GNDIFVGSAPINIYCNCGVTWNEMIHGYAENEY 69
+ CA+ + L + L R+VK G D+F N+ V W ++ GY N
Sbjct: 40 NGCAESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNV-----VAWTSVMSGYTRNGR 94
Query: 70 VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
E A++++ D++ SGV + A L C+ G + A ++
Sbjct: 95 PEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQV 136
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 98/196 (50%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---- 56
+ P + +TV S+CA + +L LG++I ++ G D+++GSA +++Y CG
Sbjct: 394 IIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSL 453
Query: 57 -------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN +I G A + Y E+A+ ++ + + +GVTF++IL+ C+H+G
Sbjct: 454 LIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAG 513
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F SM D++++P C+ M ++ + ++WG L
Sbjct: 514 LVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGAL 573
Query: 140 VSSCQVHSNVRLAKKA 155
++ C++H N +A+ A
Sbjct: 574 LNGCKLHGNCEIAEDA 589
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F++++ +C L+SL LG+Q+ +++ G+ ++F+ S+ I++YC CG
Sbjct: 270 IKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIAR 329
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI G+A + +A+ L+ + +K + +TF+A+LT CSH+G
Sbjct: 330 RIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAG 389
Query: 104 LVYAEVEIFNSM----------EH-----DHEVKPKCL---------MPYKDDLVVWGDL 139
LV + FNSM EH D +P L M K VW L
Sbjct: 390 LVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTL 449
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH N LA++ A
Sbjct: 450 LRACKVHKNTVLAEEVA 466
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P F ++VL A+ + + G ++ ++G+ +D+FVGS+ I++Y NC
Sbjct: 171 PDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKV 230
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+ WN M+ G A+N V++A+ L++ ++ SG+K VTF +++ C +
Sbjct: 231 FDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGN 286
>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 776
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 42/187 (22%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
LSSCA++++L LG+Q+ R+VK G+ G+A + +Y CG
Sbjct: 411 ALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKD 470
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113
V+WN MI GYA + + ++A++L++ + + +K D VT V +L+ CSH+G V +E FN
Sbjct: 471 IVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFN 529
Query: 114 SMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSNV 149
SM ++ + C+ MP+ D WG L+ + ++H +
Sbjct: 530 SMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDT 589
Query: 150 RLAKKAA 156
L +KAA
Sbjct: 590 ELGEKAA 596
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 98/196 (50%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---- 56
+ P + +TV S+CA + +L LG++I ++ G D+++GSA +++Y CG
Sbjct: 297 IIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSL 356
Query: 57 -------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN +I G A + Y E+A+ ++ + + +GVTF++IL+ C+H+G
Sbjct: 357 LIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAG 416
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F SM D++++P C+ M ++ + ++WG L
Sbjct: 417 LVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGAL 476
Query: 140 VSSCQVHSNVRLAKKA 155
++ C++H N +A+ A
Sbjct: 477 LNGCKLHGNCEIAEDA 492
>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 878
Score = 95.9 bits (237), Expect = 5e-18, Method: Composition-based stats.
Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 43/197 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T+L CA L++ G++I V+ +DI VGSA +++Y CG
Sbjct: 502 PNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAV 561
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSGL 104
+TWN +I Y + ++A++L+ ++ A G + VTF+A L CSHSGL
Sbjct: 562 FDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGL 621
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CLM--------------------PYKDDLVVWGDL 139
V +E+F+ ME DH VKP C++ P + + W L
Sbjct: 622 VDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSL 681
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H NV L + AA
Sbjct: 682 LGACRLHRNVELGEVAA 698
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 21/123 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYC-NCGVT-- 56
V P F + L +C++L L LGR++ ++KD + FV SA +++Y N V
Sbjct: 278 VRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASA 337
Query: 57 ----------------WNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPC 99
WN MI GYA+ E+A+ L+ + A +G T +L C
Sbjct: 338 RRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPAC 397
Query: 100 SHS 102
+ S
Sbjct: 398 ARS 400
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY---GNDIFVGSAPINIYCNCGVTWNEMI 61
+FPF +LS A+L L Q L R + G D+ VTWN MI
Sbjct: 210 RFPFNALLSMYARLG-LVDDAQSLFRTTAAAFSPGGGDV--------------VTWNTMI 254
Query: 62 HGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ +A+ + D+++ GV+ DGVTF + L CS
Sbjct: 255 SLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACS 293
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +L +C L++L +GR I I+++GY +++ V +A I++Y CG
Sbjct: 853 PDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLL 912
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TW MI G + +AI+ ++ + +G+K D +TF +IL CSHSGL+
Sbjct: 913 FDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLL 972
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
FNSM + ++PK C+ MP K D +WG L+
Sbjct: 973 NEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLC 1032
Query: 142 SCQVHSNVRLAKKAA 156
C++H +V LA+K A
Sbjct: 1033 GCRIHHDVELAEKVA 1047
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 42/186 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + T+VL +CA +SL GR + I K+ + V +A +++Y CG
Sbjct: 751 VSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAY 810
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS--- 100
V+WN MI GY++N +A+ L+ ++ + DG+T +L C
Sbjct: 811 LVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLA 869
Query: 101 --------HSGLVY----AEVEIFNSMEHDHEVKPKCL--------MPYKDDLVVWGDLV 140
H ++ +E+ + N++ D VK L M + DL+ W ++
Sbjct: 870 ALEIGRGIHGCILRNGYSSELHVANAL-IDMYVKCGSLVHARLLFDMIPEKDLITWTVMI 928
Query: 141 SSCQVH 146
S C +H
Sbjct: 929 SGCGMH 934
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------- 54
+++CA + SL LGR + + VK + ++ + +++Y CG
Sbjct: 661 VAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTV 720
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W +I Y + AI L+ ++ + GV D + ++L C+
Sbjct: 721 VSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACA 766
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 95.9 bits (237), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P + ++VLS+C+ L L G+ + + + +D++VG+A I++YC CGV
Sbjct: 386 VKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKAL 445
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+W MI G A N +V+ L+ ++ G++ +F+ IL C+H+G
Sbjct: 446 EVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAG 505
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +E F SMEH + ++P+ C+ MP D+V+W L
Sbjct: 506 LVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLWRIL 565
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N+ LA+ A
Sbjct: 566 LSACKLHRNLVLAEIAT 582
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 54/113 (47%), Gaps = 17/113 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F + +C+++ + G+ +++K G+G+ +F+ ++ I +Y G
Sbjct: 158 LTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDK 217
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I GY++ ++ + L+ + + V D VT V ++ CS+
Sbjct: 218 MDDRDLVSWNSLICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSY 270
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI G A+ A+ L+++++ + VK D +T ++L+ CSH GL+
Sbjct: 356 ISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLL 406
>gi|297720639|ref|NP_001172681.1| Os01g0884800 [Oryza sativa Japonica Group]
gi|20161229|dbj|BAB90156.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|255673935|dbj|BAH91411.1| Os01g0884800 [Oryza sativa Japonica Group]
Length = 517
Score = 95.5 bits (236), Expect = 6e-18, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 42/194 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCN------------ 52
+F VLSSCA ++L LGR + V+ G+ + VG++ +++Y
Sbjct: 144 EFAVAAVLSSCAGSTALELGRSVHAAAVRSGHEPFLSVGNSLVSMYAKTGSLRDARTVFD 203
Query: 53 -----CGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
C +TW +I GYA+N +++++Y D+ SG + D VTFV +L CSH+GL+ A
Sbjct: 204 AMRSRCAITWTALIVGYAQNGRGRESLAVYADMARSGCRPDYVTFVGLLFACSHAGLLDA 263
Query: 108 EVEIFNSMEHDHEVKP-----KCLM-------------------PYKD-DLVVWGDLVSS 142
F SM+ +H + P C++ P + D VW L+++
Sbjct: 264 GRAHFQSMQSEHGISPGPDHYACMVDLLGRAGRLGEAVDLLDRSPAAELDATVWKALLAA 323
Query: 143 CQVHSNVRLAKKAA 156
C+ H N LA++AA
Sbjct: 324 CRTHRNAALAERAA 337
Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
VTW ++ G A A+ Y+D++A+GV D A+L+ C+ S
Sbjct: 110 VTWTSLVTGLARAGSHGLAVRAYRDMVAAGVATDEFAVAAVLSSCAGS 157
>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 837
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P QF ++LS+CA+L+ L G+Q+ +K G V ++ + +Y CG
Sbjct: 461 VNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDAD 520
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TW +I GYA+N ++ Y +++SG + D +TF+ +L CSH+G
Sbjct: 521 AIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAG 580
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV + F M + +KP C+ M K D VW L
Sbjct: 581 LVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSL 640
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+VH N+ LA++AA
Sbjct: 641 LSACRVHENLELAERAA 657
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 61/113 (53%), Gaps = 17/113 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
Q+ F T+L++C+ + + G Q+ IVK G+G++++V SA +++Y CG
Sbjct: 264 NQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNML 323
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN ++ G+ + E+A+ L+K++ +K D TF ++L C
Sbjct: 324 ETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCC 376
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 19/116 (16%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+QF +VL C+ L + G I +VK+G+ ++FV + +++Y C
Sbjct: 161 SQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLF 220
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W M+ GYA+N +A+ ++ + A GV+ + TF ILT CS
Sbjct: 221 KGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACS 276
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 17/92 (18%)
Query: 31 IVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQA 73
I+K G+ N V +A +++Y G ++W ++ GYA+N E++
Sbjct: 390 IIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEES 449
Query: 74 ISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ ++ D+ +GV D +IL+ C+ L+
Sbjct: 450 LKIFCDMRVTGVNPDQFIVASILSACAELTLL 481
>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
Length = 700
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F ++V+ + + +++ GR + ++K G I+VGSA I++Y CG
Sbjct: 449 EFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGMVEDAQKVFS 508
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+WN MI GYA+N + ++A+ L++++ +SG+ VTFV IL CSH+GLV
Sbjct: 509 VMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEE 568
Query: 108 EVEIFNSMEHDHEVKPK-----CLM-------------------PYKDDLVVWGDLVSSC 143
+N M H++ + P C++ + + +WG L+S+C
Sbjct: 569 GRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEPGIWGSLLSAC 628
Query: 144 QVHSNVRLAKKAA 156
VH N + +AA
Sbjct: 629 GVHKNSDVGSRAA 641
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 17/110 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F TVL +C L +G+ + VK G+ +D+FV + + +YC CG
Sbjct: 145 SDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAF 204
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V WN MI GYA+N Y E+AI L+ + G K + TF +L
Sbjct: 205 DQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVL 254
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F VL + +S +GR +++K G D+FV +A +++Y
Sbjct: 245 PNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERA 304
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V++N +I GY+ E+A+ +Y + + G++ D TFV + + CS S V
Sbjct: 305 FGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTV 364
Query: 106 YAEVEIFNSMEHDHEVK 122
++ H H VK
Sbjct: 365 AEGAQV-----HVHSVK 376
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 17/89 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT------ 56
P F F + SSC+ S++ G Q+ VK G +D+ VG++ +N Y CG T
Sbjct: 346 PDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEA 405
Query: 57 -----------WNEMIHGYAENEYVEQAI 74
W +I G+A+N E+A+
Sbjct: 406 FESINRPNSVCWAGIISGFAQNGEGEKAL 434
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC--------- 51
+ P ++ +S+CA+ + L + I+K G+ N +FV S I++Y
Sbjct: 37 IEPNAITYSATISACAQSTRPSLATSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEAR 96
Query: 52 --------NCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83
V+WN MI GY++ E+A L+ +I S
Sbjct: 97 FLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINS 136
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 41/194 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + TTV+S+CA L +L LG+++ +V G+ D+++GS+ I++Y CG
Sbjct: 237 PDEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLV 296
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
WN +I G A + YVE+A+ ++ ++ ++ + VTF++ILT C+H+G +
Sbjct: 297 FYKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFI 356
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F SM D+ + P+ C+ M + + +WG L++
Sbjct: 357 EEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLN 416
Query: 142 SCQVHSNVRLAKKA 155
C++H N+ +A A
Sbjct: 417 GCKLHKNLEIAHIA 430
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W M++ Y+ N+ ++ I+L+ D+I G+ D VT +++ C+H G
Sbjct: 205 ISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLG 253
>gi|218194084|gb|EEC76511.1| hypothetical protein OsI_14286 [Oryza sativa Indica Group]
Length = 656
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++VLSSCA ++SL G Q +K G ++I G+A IN+Y CG
Sbjct: 364 PNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLA 423
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN +IHG+A++ +A+ ++ + ++G+K D TF+ +L C+HSG+V
Sbjct: 424 FDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMV 483
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
F M + P C+ MP++ D ++W L++
Sbjct: 484 EEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLA 543
Query: 142 SCQVHSNVRLAKKAA 156
SC++H N+ + K AA
Sbjct: 544 SCKLHRNLDIGKLAA 558
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F L +CA L +L G Q+ + V+ G+ D ++GS I +Y CG
Sbjct: 110 VAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAK 169
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V + +I + N E A ++ G+K + T ILT C
Sbjct: 170 EVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC 225
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 13 SSCAKLSSLFLGRQILTRIVKDGY---GNDIFVGSAPINIYCNCGVTWNEMIHGYAENEY 69
+ CA+ + L + L R+VK G D+F N+ V W ++ G N
Sbjct: 40 NGCAESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNV-----VAWTSVMSGCTRNGR 94
Query: 70 VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
E A++++ D++ SGV + A L C+ G + A ++
Sbjct: 95 PEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQV 136
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
+ VL +CA +L G+ I +++K ++ VG++ I++YC CG
Sbjct: 1356 LSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK 1415
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+W M+ GY + ++A+ ++ ++ +GVK + +TFV++L CSH+GLV
Sbjct: 1416 EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWH 1475
Query: 111 IFNSMEHDHEVKP---------------KCL---------MPYKDDLVVWGDLVSSCQVH 146
FN+M+H ++++P CL M K D VVWG L+ +C++H
Sbjct: 1476 WFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIH 1535
Query: 147 SNVRLAKKAA 156
NV L + AA
Sbjct: 1536 KNVDLGEIAA 1545
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT+ F + SC+ L L GR + G+ D+FV SA I++Y CG
Sbjct: 1140 PTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARAL 1199
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDII--------ASGVKHDGVTFVAILT 97
V+W MI GY +NE + A+ L+KD + + V D V V++L+
Sbjct: 1200 FDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLS 1259
Query: 98 PCSH 101
CS
Sbjct: 1260 ACSR 1263
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
++P ++ +++ +C ++ L LGR I +K+ +++G+A I++Y CG
Sbjct: 253 IFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAI 312
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN MI + ++A++L+ ++ VK D +TF+ +L C H
Sbjct: 313 EVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIK 372
Query: 104 LVYAEVEIFNSMEHDHEVKP 123
V F M + + P
Sbjct: 373 NVKEGCAYFTRMTQHYGIAP 392
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 18/116 (15%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+VLS+C+++S + + +VK G+ I VG+ ++ Y CG
Sbjct: 1256 SVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEK 1315
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSHSGLVYA 107
++WN MI YA++ +A+ ++ ++ GV+++ VT A+L C+H+G + A
Sbjct: 1316 DDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRA 1371
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 65/166 (39%), Gaps = 53/166 (31%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F F V+ +C S+ LG+ + ++K G+ D+FV + I+ Y CG
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184
Query: 55 --------------------------------------VTWNEMIHGYAENEYVEQAISL 76
V+W MI+GY N+ E+A+ L
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244
Query: 77 YKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
+K + A + + T V+++ C+ G++ I HD+ +K
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI-----HDYAIK 285
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 20/108 (18%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCN-----------------C 53
+L +C L RQI +I++ G ND + I++Y C
Sbjct: 33 LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
TWN +I N EQA+ LYK+++ G+ D TF ++ C++
Sbjct: 90 TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTN 137
>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
Length = 804
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + VLS CA L+ L G+QI R ++ V +A I +Y G
Sbjct: 429 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRM 488
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+TW MI A++ E+A+ L+++++ +GV+ D +T+V +L+ CSH+G
Sbjct: 489 FDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGF 548
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V ++ ++++H++ P+ C+ MP + D + WG L+
Sbjct: 549 VNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLL 608
Query: 141 SSCQVHSNVRLAKKAA 156
S+C+VH N LA+ AA
Sbjct: 609 SACRVHKNAELAELAA 624
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 29/169 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PTQF T VLSSCA + +GR++ + +VK G G+ + V ++ +N+Y CG
Sbjct: 162 PTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTV 221
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN M+ ++ A SL++ + + V++ A++ + +GL
Sbjct: 222 FERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSI----VSWNAMIAGYNQNGLD 277
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
+++F+ M H+ + P D+ + ++S+C NVR+ K+
Sbjct: 278 AKALKLFSRMLHESSMAP-------DEFTI-TSVLSACANLGNVRIGKQ 318
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 50/148 (33%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F T+VLS+CA L ++ +G+Q+ I++ + V +A I+ Y G
Sbjct: 295 PDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRI 354
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V W MI GY +N ++
Sbjct: 355 MDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDE 414
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCS 100
AI L++ +I G + + T A+L+ C+
Sbjct: 415 AIDLFRSMITCGPEPNSYTLAAVLSVCA 442
>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g15510, chloroplastic-like [Cucumis sativus]
Length = 878
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 40/194 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +VLS+CA++ +L G++I ++ G G D F+ +A +++Y CG
Sbjct: 498 PNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQ 557
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
WN ++ GYA+ + A+ L+ ++ + D +TF+++L CS SG+V
Sbjct: 558 FNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVT 617
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+E FN M++ + + P C+ MP + D +WG L+++
Sbjct: 618 EGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNA 677
Query: 143 CQVHSNVRLAKKAA 156
C++H NV L + AA
Sbjct: 678 CRIHRNVELGEIAA 691
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F +VL +CA +S + G++I +++ G+ +D+ VG+A I +Y CG
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++WN MI GY EN + + L+ + V D +T + + C
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASAC 309
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P TTV S+C L + LGR + +VK +G DI + ++ I +Y + G
Sbjct: 295 VDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAE 354
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W MI ++ +A+ YK + G+ D +T V++L+ C+
Sbjct: 355 TVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACA 411
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 23/139 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + +VLS+CA + L LG ++ +K G + + V ++ I++Y C
Sbjct: 396 ILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNAL 455
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G N +A+ ++ + S +K + VT +++L+ C+ G
Sbjct: 456 EVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSVTLISVLSACARIG 514
Query: 104 LVYAEVEIFNSMEHDHEVK 122
+ EI H H ++
Sbjct: 515 ALMRGKEI-----HAHALR 528
>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
Length = 1091
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T +L + A +SSL GR+I ++ G+ D + +A +++Y CG
Sbjct: 717 PNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVL 776
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI GY + + + AI+L++ + SG++ D +F AIL C HSGL
Sbjct: 777 FDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLA 836
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F +M+ +++++PK C+ MP + D +W L+
Sbjct: 837 AEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLH 896
Query: 142 SCQVHSNVRLAKKAA 156
C++H NV+LA+K A
Sbjct: 897 GCRIHKNVKLAEKVA 911
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 22/143 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + VL + L SL G I + K G G V +A I +Y CG
Sbjct: 200 VSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAA 259
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI G N + A+ L+ + + G + VT +++L C +G
Sbjct: 260 RVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPAC--AG 317
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL 126
L Y + H + VK L
Sbjct: 318 LGYG---LIGKAVHGYSVKSGLL 337
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F T+ L + A SL G+ + +++G + V +A + +Y C
Sbjct: 615 IRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEAR 674
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
++WN +I GY+ N + ++ SL+ D++ + + VT IL
Sbjct: 675 LIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FRPNAVTMTCIL 726
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 17/96 (17%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+VL +CA+ F GR + VK G + + +A +++Y NC
Sbjct: 523 SVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQK 582
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD 88
V+W MI Y ++ L ++++ G++ D
Sbjct: 583 NVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPD 618
>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Cucumis sativus]
Length = 878
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 94/194 (48%), Gaps = 40/194 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +VLS+CA++ +L G++I ++ G G D F+ +A +++Y CG
Sbjct: 498 PNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQ 557
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
WN ++ GYA+ + A+ L+ ++ + D +TF+++L CS SG+V
Sbjct: 558 FNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVT 617
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+E FN M++ + + P C+ MP + D +WG L+++
Sbjct: 618 EGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNA 677
Query: 143 CQVHSNVRLAKKAA 156
C++H NV L + AA
Sbjct: 678 CRIHRNVELGEIAA 691
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F +VL +CA +S + G++I +++ G+ +D+ VG+A I +Y CG
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++WN MI GY EN + + L+ + V D +T + + C
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASAC 309
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P TTV S+C L + LGR + +VK +G DI + ++ I +Y + G
Sbjct: 295 VDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAE 354
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W MI ++ +A+ YK + G+ D +T V++L+ C+
Sbjct: 355 TVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACA 411
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 23/139 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + +VLS+CA + L LG ++ +K G + + V ++ I++Y C
Sbjct: 396 ILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNAL 455
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G N +A+ ++ + S +K + VT +++L+ C+ G
Sbjct: 456 EVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSVTLISVLSACARIG 514
Query: 104 LVYAEVEIFNSMEHDHEVK 122
+ EI H H ++
Sbjct: 515 ALMRGKEI-----HAHALR 528
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q T+VL +C L SL G+QI I + + D+ +A + +Y CG
Sbjct: 313 PNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRV 372
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI + + E+A+ L+++++ SGV+ + VTF +L+ CSHS LV
Sbjct: 373 FSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLV 432
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+ IF+SM DH V+P C+ MP + WG L+
Sbjct: 433 DEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLG 492
Query: 142 SCQVHSNVRLAKKAA 156
C+V+ NV L + AA
Sbjct: 493 GCRVYKNVELGRIAA 507
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 67/132 (50%), Gaps = 17/132 (12%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P +++L +C L L GR++ +V++G G ++FV SA +N+Y +C
Sbjct: 177 PNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLV 236
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I Y N+ E+ +S++ +++ GV + ++ A++ C +G
Sbjct: 237 FDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRT 296
Query: 106 YAEVEIFNSMEH 117
+E+ + M++
Sbjct: 297 EKALEVLSRMQN 308
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY--CNCG---- 54
V P + +V +CA L + +++ ++ G+ +D+ +G+A I++Y C C
Sbjct: 74 VEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGAR 133
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++W M Y + +A+ ++ + +G + + VT +IL C+
Sbjct: 134 LVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACT 190
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 98/190 (51%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
+ VL +CA S LG+ I +++K G +++FVG++ I++YC CG
Sbjct: 366 LSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR 425
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+W+ M+ GY + + ++A+ ++ ++ +GVK + +TFV++L CSH+GL+
Sbjct: 426 EKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWH 485
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
F +M H+ +V+P C+ M + D VVWG L+ +C++H
Sbjct: 486 WFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMH 545
Query: 147 SNVRLAKKAA 156
NV L + +A
Sbjct: 546 KNVDLGEISA 555
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 25/124 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F + SC+ L L GRQ + + G+ D+FV SA +++Y CG
Sbjct: 150 PNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTL 209
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIA--SGVKHDG------VTFVAILT 97
V+W MI GY +N+ +A+ L+K+ + SG + DG + V++L+
Sbjct: 210 FDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLS 269
Query: 98 PCSH 101
CS
Sbjct: 270 ACSR 273
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 18/114 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+VLS+C+++S + + ++K G+ D+ V + ++ Y CG
Sbjct: 264 MVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMA 323
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSG 103
++WN +I YA+N +++ ++ ++ G + ++ VT A+L C+HSG
Sbjct: 324 ERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSG 377
>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
Length = 1133
Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T +L +CA LS L G++I +++G+ D+FV +A I++Y
Sbjct: 757 VMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAH 816
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI G+A ++AIS++ ++ GV D +TF A+L+ C +SG
Sbjct: 817 KVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSG 876
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ + F+SM D+ + P+ C+ MP K D +WG L
Sbjct: 877 LIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGAL 936
Query: 140 VSSCQVHSNVRLAKKAA 156
+ SC++H N++ A+ AA
Sbjct: 937 LGSCRIHKNLKFAETAA 953
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 51/106 (48%), Gaps = 17/106 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------------- 53
++ L +C ++ ++LG +I ++K G+ D+++ A +N Y C
Sbjct: 526 YSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMP 585
Query: 54 ---GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+ WNE I ++E +++ + L++ + S +K + T V +L
Sbjct: 586 NPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVL 631
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC-NCGVT--------------- 56
+S ++L L +G++ ++++G+ D++VG++ I++Y N +T
Sbjct: 633 ASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIF 692
Query: 57 -WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
WN ++ GY+ E A+ L + G+K D VT+ +++ + G + F M
Sbjct: 693 AWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQM 752
Query: 116 EHD 118
+ +
Sbjct: 753 QQE 755
>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 749
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F++VLS C+ L +L G QI +I+K G D+ VG+A +++Y CG
Sbjct: 370 PDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKA 429
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI G+A + +QA+ L++D+ G+K + VTFV +L+ CSH+GL
Sbjct: 430 FLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLA 489
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+ F M+ + +KP CL M ++ + +W L++
Sbjct: 490 DEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIA 549
Query: 142 SCQVHSNVRLAKKAA 156
C+ H L AA
Sbjct: 550 GCRSHGKSDLGFYAA 564
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 28/127 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++ T+VLS+C + +L LG QI + +K GYG+ I + ++ + +Y CG
Sbjct: 258 PNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKL 317
Query: 55 ---------VTWNEMIHGYAE-----------NEYVEQAISLYKDIIASGVKHDGVTFVA 94
VTWN MI G+A+ ++ A+++++ + SG+K D TF +
Sbjct: 318 FEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSS 377
Query: 95 ILTPCSH 101
+L+ CS+
Sbjct: 378 VLSVCSN 384
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 42/177 (23%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV---------- 55
FP +L C + R I IVK G+ D+FV + +N+Y CGV
Sbjct: 62 FP---LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDN 118
Query: 56 -------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS-------- 100
W ++ GY +N + A+ L+ ++ +G T +L CS
Sbjct: 119 LPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFG 178
Query: 101 ---HSGLVYAEVEI----------FNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSSC 143
H+ L+ ++ F S E K K+ D++ W ++SSC
Sbjct: 179 KQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSC 235
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP+ + VL++C+ L S+ G+Q+ ++K D +G++ + Y
Sbjct: 156 YPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIK 215
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++W +I +N +++S + D+++ G+K + T ++L+ C
Sbjct: 216 AFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSAC 270
>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 804
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + VLS CA L+ L G+QI R ++ V +A I +Y G
Sbjct: 429 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRM 488
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+TW MI A++ E+A+ L+++++ +GV+ D +T+V +L+ CSH+G
Sbjct: 489 FDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGF 548
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V ++ ++++H++ P+ C+ MP + D + WG L+
Sbjct: 549 VNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLL 608
Query: 141 SSCQVHSNVRLAKKAA 156
S+C+VH N LA+ AA
Sbjct: 609 SACRVHKNAELAELAA 624
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 29/169 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PTQF T VLSSCA + +GR++ + +VK G G+ + V ++ +N+Y CG
Sbjct: 162 PTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTV 221
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN M+ ++ A SL++ + + V++ A++ + +GL
Sbjct: 222 FERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSI----VSWNAMIAGYNQNGLD 277
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
+++F+ M H+ + P D+ + ++S+C NVR+ K+
Sbjct: 278 AKALKLFSRMLHESSMAP-------DEFTI-TSVLSACANLGNVRIGKQ 318
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 50/148 (33%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F T+VLS+CA L ++ +G+Q+ I++ + V +A I+ Y G
Sbjct: 295 PDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRI 354
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V W MI GY +N ++
Sbjct: 355 MDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDE 414
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCS 100
AI L++ +I G + + T A+L+ C+
Sbjct: 415 AIDLFRSMITCGPEPNSYTLAAVLSVCA 442
>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Brachypodium distachyon]
Length = 515
Score = 95.5 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCN-------- 52
V P ++ LSSCA ++L LG+ + V+ G + VG++ +++Y
Sbjct: 139 VEPDEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLREAR 198
Query: 53 ---------CGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
C VTW +I GYA+N E+++ +Y +++ SG + D VTF+ +L CSH+G
Sbjct: 199 KVFDATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAG 258
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDL 139
LV A F SM+ DH + P C++ K D VW L
Sbjct: 259 LVDAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVWKAL 318
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ H N LA++AA
Sbjct: 319 LGACRTHRNAELAERAA 335
Score = 39.3 bits (90), Expect = 0.54, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
VTW ++ G A + + A+ +Y+D++ASGV+ D A L+ C+ S
Sbjct: 109 VTWTSLLTGLARSGSHDAALRVYRDMVASGVEPDEYVVAAALSSCAGS 156
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 98/190 (51%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
+ VL +CA S LG+ I +++K G +++FVG++ I++YC CG
Sbjct: 212 LSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR 271
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+W+ M+ GY + + ++A+ ++ ++ +GVK + +TFV++L CSH+GL+
Sbjct: 272 EKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWH 331
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
F +M H+ +V+P C+ M + D VVWG L+ +C++H
Sbjct: 332 WFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMH 391
Query: 147 SNVRLAKKAA 156
NV L + +A
Sbjct: 392 KNVDLGEISA 401
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 21/136 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F + SC+ L L GRQ + + G+ D+FV SA +++Y CG
Sbjct: 74 PNRSTFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTL 133
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI GY +N+ +A+ ++ + + D +++ +I+ + +G+
Sbjct: 134 FDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGM----AERDVISWNSIIAVYAQNGMS 189
Query: 106 YAEVEIFNSMEHDHEV 121
+EIF+ M D E+
Sbjct: 190 TESMEIFHRMVKDGEI 205
>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
Length = 825
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V TQ F++VL +CA +S+ QI + I K + ND V ++ I+ Y CG
Sbjct: 449 VLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDAL 508
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I GYA + A+ L+ + S K + VTFVA+L+ C +G
Sbjct: 509 KVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTG 568
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + +FNSM DH +KP C+ +P +VW L
Sbjct: 569 LVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRAL 628
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC VH NV L K +A
Sbjct: 629 LSSCVVHKNVALGKFSA 645
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 76/133 (57%), Gaps = 17/133 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F + VL +CA ++ L LG+QI ++K GY +++FVG+A +++Y C
Sbjct: 348 VVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSL 407
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I GY ++ + E A+S+++++ A+ V VTF ++L C+++
Sbjct: 408 EIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTA 467
Query: 104 LVYAEVEIFNSME 116
+ V+I + +E
Sbjct: 468 SIKHTVQIHSLIE 480
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F T+VL + LSS LG+ I VK + VG A +++Y CG
Sbjct: 249 PNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTV 308
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ W+ +I YA++ EQA ++ ++ S V + + +L C++ +
Sbjct: 309 FEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFL 368
Query: 106 YAEVEIFN 113
+I N
Sbjct: 369 DLGQQIHN 376
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
F TT+L + + L I K G+ + FVGS+ I+ Y CG
Sbjct: 149 NHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVF 208
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
VTW M+ Y+EN+ E A++ + + +G K + ++L
Sbjct: 209 DGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVL 258
>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
Length = 635
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 47/202 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT+ F TV+ CA ++ +GR++ I N + VG+A IN+Y C
Sbjct: 255 VEPTEVTFVTVVDVCADIAVFGIGREVHGVIDARSEAN-VCVGNALINMYGKCASPDEAR 313
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIAS-----GVKHDGVTFVAILTP 98
+TWN MI Y +N Y QA+ +YK + S G+ HD +TF+ +L
Sbjct: 314 KVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGVLFA 373
Query: 99 CSHSGLVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLV 134
CSH+GLV ++++SM D+ KP L MPY D
Sbjct: 374 CSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHPDHT 433
Query: 135 VWGDLVSSCQVHSNVRLAKKAA 156
+W L+ +C H++V A +AA
Sbjct: 434 IWTILLGACITHADVERAARAA 455
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +L + A LS L GR + RI G+ DIFV + IN+Y C
Sbjct: 154 ISPNSITFIELLGAVAALSWLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADAC 213
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ W ++ YA N + A+ ++ + GV+ VTFV ++ C+
Sbjct: 214 SVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCA 270
>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Brachypodium distachyon]
Length = 902
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 98/198 (49%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+P + F ++L +C+++++L G++I I+K G+G+ SA I++Y CG
Sbjct: 602 VHPDEVTFASILKACSEMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSKCGDIISSF 661
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
WN MI G+A+N Y ++A+ L++ + S +K D VTF+ +L C+H+
Sbjct: 662 EAFKELKSKQDITLWNSMILGFAKNGYADEALLLFQKMQDSQIKSDEVTFLGVLIACAHA 721
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GL+ F+SM + + P+ C +P++ D V+W
Sbjct: 722 GLISEGRHYFDSMSKVYGIMPRVDHYACFIDLLGRGGHLQEAQEVINELPFRPDGVIWAT 781
Query: 139 LVSSCQVHSNVRLAKKAA 156
+++C++H + + AA
Sbjct: 782 YLAACRMHKDEERGEIAA 799
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++PT+ F ++LS+ A ++ GRQ+ V+ G ++FVGS+ IN+Y CG
Sbjct: 196 LWPTRSTFASMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAI 255
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN M++G NEY +AI ++ + G++ D T+V++L C+H
Sbjct: 256 LVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAH 313
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P QF LS+C++L +L G+Q K G G+ F +A +N+Y CG
Sbjct: 27 VRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDAR 86
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W MI GY ++A+ L+ + G D VT VA++ C+ +
Sbjct: 87 RVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVV--CALTA 144
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNV 149
L +E ++ H MP V W ++S S +
Sbjct: 145 L--GRLEDARTLLHR--------MPAPSSTVAWNAVISGYAQQSGI 180
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F + +VL +CA L S LGRQ+ +K+ +FV +A ++++ G
Sbjct: 301 EFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFN 360
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN ++ G NE E+AI + K + GV D V+F ++ CS+
Sbjct: 361 LITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSN 414
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 19/118 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND-IFVGSAPINIYCNCG------- 54
P+ F F+++LS C L S +G+Q+ +K G+ ND VG + + Y
Sbjct: 501 PSSFTFSSILSGCTGLLSSIIGKQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPEDANK 560
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V W ++ GYA+N Y Q++ + + + V D VTF +IL CS
Sbjct: 561 LLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSE 618
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F TV+++C+ + + G+QI +K ++ VGS+ I+ Y G
Sbjct: 398 VTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCR 457
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V N +I G +N ++AI L++ ++ G+K TF +IL+ C+
Sbjct: 458 KVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCT 514
>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 769
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +L C ++SSL LG Q+ K G + F+ + I++Y CG
Sbjct: 468 PDHITMGNLLRGCVEISSLKLGSQVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRI 527
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ +I GYA++ + E+A+ L++++ +SG++ + VTFV +LT CSH GLV
Sbjct: 528 FDSMDNGDVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACSHVGLV 587
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
++++ M+ +H + P C+ M + D+VVW L+S
Sbjct: 588 EEGLKLYAIMQTEHGISPTKEHCSCVVDLLARAGHLNEAERFIDEMKLEPDVVVWKTLLS 647
Query: 142 SCQVHSNVRLAKKAA 156
+C+ NV LA+KAA
Sbjct: 648 ACKTQGNVDLAQKAA 662
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P ++ F + L +C+ L G QI +K + G + ++Y CG
Sbjct: 264 HPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKLELTGNAIAGCSLCDMYARCGFLDSARR 323
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+WN +I G A N Y ++A+S++ ++ SG D ++ ++L
Sbjct: 324 VFNQIERPDTASWNVIIAGLANNGYADEAVSVFSEMRNSGFIPDAISLRSLL 375
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 18/116 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P QF F +++ +CA + LG+Q+ +++K + + +A I +Y
Sbjct: 163 PDQFAFGSIIKACACAGDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKV 222
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH-DGVTFVAILTPCS 100
++W+ +I G+++ + +A+S K++++ GV H + F + L CS
Sbjct: 223 FYGIPAKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACS 278
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +++ +C+ SL GR+I I+ D + + +++Y CG
Sbjct: 67 YISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMP 126
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V++ +I GY++N +AI+LY ++ + + D F +I+ C+ +G V
Sbjct: 127 ERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACAGDV 181
>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 755
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F++VLS C+ L +L G QI +I+K G D+ VG+A +++Y CG
Sbjct: 376 PDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKA 435
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI G+A + +QA+ L++D+ G+K + VTFV +L+ CSH+GL
Sbjct: 436 FLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLA 495
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+ F M+ + +KP CL M ++ + +W L++
Sbjct: 496 DEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIA 555
Query: 142 SCQVHSNVRLAKKAA 156
C+ H L AA
Sbjct: 556 GCRSHGKSDLGFYAA 570
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 28/127 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++ T+VLS+C + +L LG QI + +K GYG+ I + ++ + +Y CG
Sbjct: 264 PNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKL 323
Query: 55 ---------VTWNEMIHGYAE-----------NEYVEQAISLYKDIIASGVKHDGVTFVA 94
VTWN MI G+A+ ++ A+++++ + SG+K D TF +
Sbjct: 324 FEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSS 383
Query: 95 ILTPCSH 101
+L+ CS+
Sbjct: 384 VLSVCSN 390
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 42/177 (23%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV---------- 55
FP +L C + R I IVK G+ D+FV + +N+Y CGV
Sbjct: 68 FP---LLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDN 124
Query: 56 -------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS-------- 100
W ++ GY +N + A+ L+ ++ +G T +L CS
Sbjct: 125 LPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFG 184
Query: 101 ---HSGLVYAEVEI----------FNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSSC 143
H+ L+ ++ F S E K K+ D++ W ++SSC
Sbjct: 185 KQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSC 241
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP+ + VL++C+ L S+ G+Q+ ++K D +G++ + Y
Sbjct: 162 YPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIK 221
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++W +I +N +++S + D+++ G+K + T ++L+ C
Sbjct: 222 AFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSAC 276
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 40/194 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +VLS+CA++ +L G++I ++ G G D F+ +A +++Y CG
Sbjct: 495 PNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQ 554
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
+WN ++ GYA+ A+ L+ +I S V D +TF ++L CS SG+V
Sbjct: 555 FNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVT 614
Query: 107 AEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVSS 142
+E F SMEH + P MP D +WG L+++
Sbjct: 615 DGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNA 674
Query: 143 CQVHSNVRLAKKAA 156
C+++ NV L + AA
Sbjct: 675 CRIYQNVELGELAA 688
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T+V+S+C L LGR++ ++K G+ ++ V ++ I ++ + G
Sbjct: 292 VDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAE 351
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY +N E+A+ Y + GV D +T ++L+ C+ G
Sbjct: 352 MVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLG 411
Query: 104 LV 105
L+
Sbjct: 412 LL 413
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F VL +C L L GR++ +++ G+ +D+ V +A I +Y CG
Sbjct: 191 IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GY EN+ + + L+ + V D +T ++++ C G
Sbjct: 251 LVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG 310
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 23/139 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +VLS+CA L L G + + G + + V ++ I++Y C
Sbjct: 393 VVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKAL 452
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W +I G N +A+ ++ +I S +K + VT V++L+ C+ G
Sbjct: 453 EVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIG 511
Query: 104 LVYAEVEIFNSMEHDHEVK 122
+ EI H H ++
Sbjct: 512 ALSCGKEI-----HAHALR 525
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
+WN ++ GYA+ Y ++A++LY ++ G++ D TF +L C
Sbjct: 162 SWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTC 205
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +VL +CA L++L G+ I I++ G + + V SA + +Y CG
Sbjct: 283 PNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRV 342
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I Y + Y ++AI ++++++A+G VTFV++L CSH GLV
Sbjct: 343 FDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLV 402
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+F +M DH +KP+ C+ M + VWG L+
Sbjct: 403 EEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLG 462
Query: 142 SCQVHSNVRLAKKAA 156
SC++H NV LA++A+
Sbjct: 463 SCRIHGNVELAERAS 477
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 23/123 (18%)
Query: 1 VYPTQFPFTTVLSSCAK----LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-- 54
V +F +T VL +C ++ L G++I + + GY + +++ + +++Y G
Sbjct: 174 VESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCV 233
Query: 55 ---------------VTWNEMIHGYAENEYVEQAISLYKDII--ASGVKHDGVTFVAILT 97
V+W+ MI YA+N +A+ +++++ + VT V++L
Sbjct: 234 DYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQ 293
Query: 98 PCS 100
C+
Sbjct: 294 ACA 296
>gi|242038427|ref|XP_002466608.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
gi|241920462|gb|EER93606.1| hypothetical protein SORBIDRAFT_01g010975 [Sorghum bicolor]
Length = 752
Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + ++VL +CA L SL +G+ + IVK G ++IF+G+A ++Y G
Sbjct: 514 PGEITLSSVLLACANLCSLEMGKMVHAEIVKLGIEDNIFMGTALSDMYAKSGDLDSSRRM 573
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TW M+ G AEN + E++I L++++IA+ + + TF+AIL CSH GLV
Sbjct: 574 FYQMPEKNNITWTAMVQGLAENGFAEESILLFENMIANRIAPNEHTFLAILFACSHCGLV 633
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F +M+ H + PK C+ +P K D W L+S
Sbjct: 634 EQAIHYFETMQA-HGIPPKDKHYTCMVDVLARAGRLPEAEELLMKVPSKLDTSSWSSLLS 692
Query: 142 SCQVHSNVRLAKKAA 156
+C + N + ++AA
Sbjct: 693 ACNTYRNKEIGERAA 707
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 54/156 (34%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------------- 53
F++VLS+CA L L G +I +K G+ + +FV S+ I++YC C
Sbjct: 387 FSSVLSACATLHDLRGGTRIHANALKMGFSSSLFVSSSLIDMYCKCKQCTDAQRIFNSLP 446
Query: 54 ----------------------------------GVTWNEMIHGYAENEYVEQAISLYKD 79
+WN MI GYAEN A++ +
Sbjct: 447 EKNTVCWNSLISGYSWNGKMVEAEELFKKMPARNAASWNTMISGYAENRRFGDALNYFCA 506
Query: 80 IIASGVKHDGVTFVAILTPCSH------SGLVYAEV 109
++ASG +T ++L C++ +V+AE+
Sbjct: 507 MLASGQIPGEITLSSVLLACANLCSLEMGKMVHAEI 542
>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
Length = 698
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + VLS CA L+ L G+QI R ++ V +A I +Y G
Sbjct: 323 PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRM 382
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+TW MI A++ E+A+ L+++++ +GV+ D +T+V +L+ CSH+G
Sbjct: 383 FDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGF 442
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V ++ ++++H++ P+ C+ MP + D + WG L+
Sbjct: 443 VNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLL 502
Query: 141 SSCQVHSNVRLAKKAA 156
S+C+VH N LA+ AA
Sbjct: 503 SACRVHKNAELAELAA 518
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 82/169 (48%), Gaps = 29/169 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PTQF T VLSSCA + +GR++ + +VK G G+ + V ++ +N+Y CG
Sbjct: 56 PTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTV 115
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN M+ ++ A SL++ + + V++ A++ + +GL
Sbjct: 116 FERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSI----VSWNAMIAGYNQNGLD 171
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
+++F+ M H+ + P D+ + ++S+C NVR+ K+
Sbjct: 172 AKALKLFSRMLHESSMAP-------DEFTI-TSVLSACANLGNVRIGKQ 212
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 57/148 (38%), Gaps = 50/148 (33%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F T+VLS+CA L ++ +G+Q+ I++ + V +A I+ Y G
Sbjct: 189 PDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRI 248
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V W MI GY +N ++
Sbjct: 249 MDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDE 308
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCS 100
AI L++ +I G + + T A+L+ C+
Sbjct: 309 AIDLFRSMITCGPEPNSYTLAAVLSVCA 336
>gi|242057853|ref|XP_002458072.1| hypothetical protein SORBIDRAFT_03g026480 [Sorghum bicolor]
gi|241930047|gb|EES03192.1| hypothetical protein SORBIDRAFT_03g026480 [Sorghum bicolor]
Length = 579
Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 43/183 (23%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYG-NDIFVGSAPINIYCNCG------------ 54
+TTVL +C+ L+ L GRQ+ R +KDG+G ++ FV ++ I++Y +CG
Sbjct: 342 YTTVLHTCSVLALLAFGRQVHARTIKDGFGRSNTFVSNSLISMYSSCGATLDLEQVFEEM 401
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEV 109
V+WN +I G +N QA++ + + G+ ++G TF+AILT CSHSGLV +
Sbjct: 402 TVRDVVSWNSVIQGLGQNGLGRQALAAGERALELGM-YNGNTFIAILTSCSHSGLVVEGL 460
Query: 110 EIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVSSCQV 145
F++M H V+P MP+ + + W L+ SC
Sbjct: 461 GYFDAMAKKHGVEPTLGHYISVIDLLGRAGRLEEAYDLLRKMPFASNALAWRTLLHSCLA 520
Query: 146 HSN 148
H N
Sbjct: 521 HKN 523
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 40/194 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +VLS+CA++ +L G++I ++ G G D F+ +A +++Y CG
Sbjct: 495 PNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQ 554
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
+WN ++ GYA+ A+ L+ +I S V D +TF ++L CS SG+V
Sbjct: 555 FNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVT 614
Query: 107 AEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVSS 142
+E F SMEH + P MP D +WG L+++
Sbjct: 615 DGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNA 674
Query: 143 CQVHSNVRLAKKAA 156
C+++ NV L + AA
Sbjct: 675 CRIYQNVELGELAA 688
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 17/122 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T+V+S+C L LGR++ ++K G+ ++ V ++ I ++ + G
Sbjct: 292 VDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAE 351
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY +N E+A+ Y + GV D +T ++L+ C+ G
Sbjct: 352 MVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLG 411
Query: 104 LV 105
L+
Sbjct: 412 LL 413
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F VL +C L L GR++ +++ G+ +D+ V +A I +Y CG
Sbjct: 191 IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSAR 250
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GY EN+ + + L+ + V D +T ++++ C G
Sbjct: 251 LVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALG 310
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 23/139 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +VLS+CA L L G + + G + + V ++ I++Y C
Sbjct: 393 VVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKAL 452
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W +I G N +A+ ++ +I S +K + VT V++L+ C+ G
Sbjct: 453 EVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIG 511
Query: 104 LVYAEVEIFNSMEHDHEVK 122
+ EI H H ++
Sbjct: 512 ALSCGKEI-----HAHALR 525
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
+WN ++ GYA+ Y ++A++LY ++ G++ D TF +L C
Sbjct: 162 SWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTC 205
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 41/194 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P VL++CA+L +L G+ + + + +F+G+A +++Y CG
Sbjct: 221 VRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGM 280
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ W MI G A + +++L+ + +SGVK D + F+ L C+H+G
Sbjct: 281 EVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTG 340
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV E+FNSM +++ +KPK C+ MP K D ++WG L
Sbjct: 341 LVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGAL 400
Query: 140 VSSCQVHSNVRLAK 153
++ C+ H NV LA+
Sbjct: 401 MAGCRFHKNVELAE 414
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W+ M++GY + +A+ ++ + A GV+ D V +L C+ G
Sbjct: 190 AVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLG 239
>gi|297844718|ref|XP_002890240.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336082|gb|EFH66499.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 95/184 (51%), Gaps = 41/184 (22%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+LS CA+L +L LGR+I +++ ++I V +A +N+Y CG
Sbjct: 440 ILSICAELPALNLGREIHGHVIRTSMSDNILVQNALVNMYTKCGLLREGSLVFEAIRDKD 499
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113
++WN +I GY + + E+A+S++ +I SG DG+ VA+L+ CSH+GLV +IF
Sbjct: 500 LISWNSIIKGYGMHGFGEKALSMFDRMIKSGCHPDGIALVAVLSACSHAGLVEKGRKIFY 559
Query: 114 SMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSNV 149
SM ++P+ C+ MP + + V G L++SC++H N+
Sbjct: 560 SMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNM 619
Query: 150 RLAK 153
+A+
Sbjct: 620 DIAE 623
>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
Length = 1135
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++VLSSCA ++SL G Q +K G ++I G+A IN+Y CG
Sbjct: 410 PNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLA 469
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN +IHG+A++ +A+ ++ + ++G+K D TF+ +L C+HSG+V
Sbjct: 470 FDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMV 529
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
F M + P C+ MP++ D ++W L++
Sbjct: 530 EEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLA 589
Query: 142 SCQVHSNVRLAKKAA 156
SC++H N+ + K AA
Sbjct: 590 SCKLHRNLDIGKLAA 604
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F L +CA L +L G Q+ + V+ G+ D ++GS I +Y CG
Sbjct: 110 VAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAK 169
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V + +I + N E A ++ G+K + T ILT C
Sbjct: 170 EVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC 225
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 23/121 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKD--GYGNDIFVGSAPINIYCNCG------ 54
P + TT+L++C ++ LG+QI ++K ++ +A I+ Y G
Sbjct: 213 PNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAK 268
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W M+ Y + +E+A+ ++ D+I+ GV + +L C G
Sbjct: 269 AVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIG 328
Query: 104 L 104
L
Sbjct: 329 L 329
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 13 SSCAKLSSLFLGRQILTRIVKDGY---GNDIFVGSAPINIYCNCGVTWNEMIHGYAENEY 69
+ CA+ + L + L R+VK G D+F N+ V W ++ GY N
Sbjct: 40 NGCAESPDVVLECKRLNRLVKSGRLADALDLFDRMPRKNV-----VAWTSVMSGYTRNGR 94
Query: 70 VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
E A++++ D++ SGV + A L C+ G + A ++
Sbjct: 95 PEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQV 136
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 95.1 bits (235), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 96/193 (49%), Gaps = 41/193 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + +VL +CA+L +L LG+ I K G+ +I V +A I +Y CG
Sbjct: 245 IEPDEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGR 304
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W+ MI G A + +AI L++++ + ++ + +TFV +L+ C+H+G
Sbjct: 305 RLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAG 364
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L+ + F SM+ D+ ++P CL MP K D +WG L
Sbjct: 365 LLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSL 424
Query: 140 VSSCQVHSNVRLA 152
+SSC+ HSN+ +A
Sbjct: 425 LSSCRSHSNLEIA 437
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 21/133 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
++P +F F V+ SCA L LG+Q+ + K G ++ V ++ + +Y C
Sbjct: 113 IFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAH 172
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G+ + +A ++++++ + ++ AI++ + G
Sbjct: 173 KVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTI----FSWTAIVSGYARIG 228
Query: 104 LVYAEVEIFNSME 116
+E F M+
Sbjct: 229 CYADALEFFRRMQ 241
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 41/192 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
PT LSSCA L +L LGR I + K+G+ + V +A I++Y CG
Sbjct: 234 PTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSV 293
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
W+ MI YA + + QAIS+ +++ + V+ D +TF+ IL CSH+GLV
Sbjct: 294 FKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLV 353
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
E F+SM H++ + P C+ +P K ++W L+S
Sbjct: 354 EEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLS 413
Query: 142 SCQVHSNVRLAK 153
SC H NV +AK
Sbjct: 414 SCSSHGNVEMAK 425
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY--CN------ 52
+ P + F+++L +CA+L +L G+Q+ VK G G++++V IN+Y CN
Sbjct: 131 LLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAAR 190
Query: 53 ---------CGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
C V +N +I A N +A++L++++ SG+K VT + L+ C+ G
Sbjct: 191 RVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLG 250
>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1221
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++VLSSCA ++SL G Q +K G ++I G+A IN+Y CG
Sbjct: 337 PNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLA 396
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN +IHG+A++ +A+ ++ + ++G+K D TF+ +L C+HSG+V
Sbjct: 397 FDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMV 456
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
F M + P C+ MP++ D ++W L++
Sbjct: 457 EEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLA 516
Query: 142 SCQVHSNVRLAKKAA 156
SC++H N+ + K AA
Sbjct: 517 SCKLHRNLDIGKLAA 531
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F L +CA L +L G Q+ + V+ G+ D ++GS I +Y CG
Sbjct: 37 VAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAK 96
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V + +I + N E A ++ G+K + T ILT C
Sbjct: 97 EVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTAC 152
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 23/121 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKD--GYGNDIFVGSAPINIYCNCG------ 54
P + TT+L++C ++ LG+QI ++K ++ +A I+ Y G
Sbjct: 140 PNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAK 195
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W M+ Y + +E+A+ ++ D+I+ GV + +L C G
Sbjct: 196 AVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSIG 255
Query: 104 L 104
L
Sbjct: 256 L 256
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V W ++ GY N E A++++ D++ SGV + A L C+ G + A ++
Sbjct: 7 VAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQV 63
>gi|310656753|gb|ADP02188.1| PPR domain-containing protein [Triticum aestivum]
Length = 788
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++VL +CA L SL G+ + +K G IF+G+A ++Y G
Sbjct: 509 PGEITFSSVLLACANLCSLVTGKMAHAKTIKLGIEESIFIGTALSDMYAKSGDLQSSKRM 568
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW MI G AEN + E++I L++D++A+G+ + TF+A+L CSH GLV
Sbjct: 569 FYQMPERNDVTWTAMIQGLAENGFAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLV 628
Query: 106 YAEVEIFNSMEHDHEVKPK-----CLM-------------------PYKDDLVVWGDLVS 141
+ F+ M+ + PK C++ P K + W L+S
Sbjct: 629 EQAIHYFDKMQA-LGISPKEKHYTCMVDVLARAGRLAEAEALLMKTPSKSEANSWAALLS 687
Query: 142 SCQVHSNVRLAKKAA 156
+C + N +A++AA
Sbjct: 688 ACNTYRNEEIAERAA 702
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 17/95 (17%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F++VLS+CA L L G +I R +K G ++FV + I++YC C
Sbjct: 382 FSSVLSACASLEDLRGGARIHARSLKMGSSTNVFVSCSLIDMYCKCNKCGDAQTIFDTLP 441
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGV 85
V WN ++ GY+ N + +A+ L+K + A +
Sbjct: 442 QKNIVCWNSLVSGYSYNGKMVEAMYLFKKMPARNL 476
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P TVLS+CA+L +L LG+ + G +++VG+A +++Y CG+
Sbjct: 169 VPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAI 228
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN +I G A + A++L+ + +G K DG+TF+ IL C+H G
Sbjct: 229 SVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMG 288
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F SM D+ + P+ C+ MP + D V+W L
Sbjct: 289 LVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGL 348
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C+++ NV LA+ A
Sbjct: 349 LGACRIYKNVELAELA 364
>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
Length = 719
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + LS+CAK+ L G +I I +G +G+A +++Y CG
Sbjct: 343 VRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESAS 402
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW MI G+A + + EQAI+ +K ++ +G+K D V F+A+LT C HSG
Sbjct: 403 EVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSG 462
Query: 104 LVYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDL 139
V + F+SM D+ ++P MP D V+WG L
Sbjct: 463 QVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGAL 522
Query: 140 VSSCQVHSNVRLAKKA 155
+C+ H ++AK A
Sbjct: 523 FCACRAHKKTKMAKFA 538
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+W M+ G++ N E+A+S++ ++ GV+ + T V+ L+ C+ G + A + I
Sbjct: 313 VSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRI 369
>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
Length = 507
Score = 95.1 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + ++VL +CA + +L LGR++ G +++V +A + +Y CG
Sbjct: 214 VRPNEVTVSSVLPACAAVGALALGRKVERYARGRGMLTNVYVANALVEMYAKCGSIRRAW 273
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+WN MI +A + + + L+ + +G K DG+TFV ++ C+H
Sbjct: 274 MVFRGIGKQRDLCSWNSMIMAFAVHGLWREVLGLFHKLRMTGAKPDGITFVGVILACTHG 333
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV +FNSM + +KP+ C+ MP + D V+WG
Sbjct: 334 GLVDEGKLLFNSMREEFGLKPRIEHYGCMVDLLGRAGLLKEADSLIASMPMEPDAVIWGA 393
Query: 139 LVSSCQVHSNVRLAKKA 155
L+ +C H N+ LA+ A
Sbjct: 394 LLGACSFHGNLELAEVA 410
>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 696
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V ++ F+ L S ++L+ L LG+QI ++ G+ ++ FV S+ I +Y G
Sbjct: 397 VRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDAR 456
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ E L+ +++ D +TFV ++T CSH+G
Sbjct: 457 KSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAG 516
Query: 104 LVYAEVEIFNSMEHDHEV---------------------KPKCL---MPYKDDLVVWGDL 139
LV EI N+ME + V K K L MP++ D +VW L
Sbjct: 517 LVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTL 576
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H NV LA A
Sbjct: 577 LGACRIHGNVELASDVA 593
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F + L S A +G Q+ + +K G N++F SA +++Y CG
Sbjct: 94 FALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDG 153
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN +I GY E+ + A+ L+ ++ G+ D TF ++LT
Sbjct: 154 MPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLT 202
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 20/120 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F ++L++ S FL Q+ +IVK G + V +A I Y CG
Sbjct: 192 PDEATFASLLTAVEG-PSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRI 250
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPCSHSG 103
++WN M+ Y N ++A+ + ++ SGV D +F +I++ CS G
Sbjct: 251 FDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHG 310
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 21/121 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLS-SLFLGRQILTRIVKDGYGNDIFVGSAPINIYC----NC-- 53
V+P + FT+++SSC++ GR I ++K V +A I +Y NC
Sbjct: 292 VHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMM 351
Query: 54 --------------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN M+ GY+++ A+ ++ + + V+ D F A L
Sbjct: 352 EDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSS 411
Query: 100 S 100
S
Sbjct: 412 S 412
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 95.1 bits (235), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 41/187 (21%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
VL++CA L +L LG +I + G+ ++ + + I++Y CG
Sbjct: 265 AVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER 324
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIF 112
V+W+ MI G A + E+A+ L+ D+ G++ +GVTF+ +L CSH GL+ F
Sbjct: 325 TVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFF 384
Query: 113 NSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSN 148
SM D+ + P+ C+ MP K + VVWG L+ +C+VH N
Sbjct: 385 ASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKN 444
Query: 149 VRLAKKA 155
V +A++A
Sbjct: 445 VEMAEEA 451
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 48/151 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F ++VL +C L L GR + + K G+ +++++ + +++Y +CG
Sbjct: 124 VCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEAR 183
Query: 55 -----------VTWN-------------------------------EMIHGYAENEYVEQ 72
VTWN MI GY + ++
Sbjct: 184 LLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKE 243
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
AI L+ + +GVK + VT VA+L C+ G
Sbjct: 244 AIHLFAKMEEAGVKCNEVTVVAVLAACADLG 274
>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
Length = 696
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V ++ F+ L S ++L+ L LG+QI ++ G+ ++ FV S+ I +Y G
Sbjct: 397 VRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDAR 456
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ E L+ +++ D +TFV ++T CSH+G
Sbjct: 457 KSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAG 516
Query: 104 LVYAEVEIFNSMEHDHEV---------------------KPKCL---MPYKDDLVVWGDL 139
LV EI N+ME + V K K L MP++ D +VW L
Sbjct: 517 LVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTL 576
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H NV LA A
Sbjct: 577 LGACRIHGNVELASDVA 593
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F + L S A +G Q+ + +K G N++F SA +++Y CG
Sbjct: 94 FALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDG 153
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN +I GY E+ + A+ L+ ++ G+ D TF ++LT
Sbjct: 154 MPERNTVSWNALIAGYTESGDMASALELFLEMEREGLVPDEATFASLLT 202
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 20/120 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F ++L++ S FL Q+ +IVK G + V +A I Y CG
Sbjct: 192 PDEATFASLLTAVEG-PSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRI 250
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPCSHSG 103
++WN M+ Y N ++A+ + ++ SGV D +F +I++ CS G
Sbjct: 251 FDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHG 310
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 21/121 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLS-SLFLGRQILTRIVKDGYGNDIFVGSAPINIYC----NC-- 53
V+P + FT+++SSC++ GR I ++K V +A I +Y NC
Sbjct: 292 VHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMM 351
Query: 54 --------------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN M+ GY+++ A+ ++ + + V+ D F A L
Sbjct: 352 EDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSS 411
Query: 100 S 100
S
Sbjct: 412 S 412
>gi|15223809|ref|NP_177827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098688|sp|O49287.1|PP127_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial; Flags: Precursor
gi|2829915|gb|AAC00623.1| Hypothetical protein [Arabidopsis thaliana]
gi|332197804|gb|AEE35925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 695
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 42/196 (21%)
Query: 3 PT-QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
PT + ++V+S+CA +SSL LG Q+ R G +D V S+ I++YC CG
Sbjct: 447 PTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRR 506
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V WN MI GYA N +AI L+K + +G++ +TF+ +LT C++ GL
Sbjct: 507 VFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGL 566
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLV 140
V ++F SM+ DH P C+ MP+ D +W ++
Sbjct: 567 VEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSIL 626
Query: 141 SSCQVHSNVRLAKKAA 156
C + + KKAA
Sbjct: 627 RGCVANGYKAMGKKAA 642
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 68/187 (36%), Gaps = 61/187 (32%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
TTVL +CA+L +L G+QI +I+ G D + S+ +N+Y CG
Sbjct: 190 LTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIR 249
Query: 55 -----------------------------------VTWNEMIHGYAENEYVEQAISLYKD 79
+ WN MI GY N +A+ L+ +
Sbjct: 250 EPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNE 309
Query: 80 IIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG-- 137
+ + + D T A++ C G + ++ H H C DD+VV
Sbjct: 310 -MRNETREDSRTLAAVINACIGLGFLETGKQM-----HCH----ACKFGLIDDIVVASTL 359
Query: 138 -DLVSSC 143
D+ S C
Sbjct: 360 LDMYSKC 366
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VT N ++HGY N Y E+A+ L+K++ S D +T +L C+
Sbjct: 156 VTLNSLLHGYILNGYAEEALRLFKELNFSA---DAITLTTVLKACAE 199
>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
lyrata]
Length = 950
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P+ ++LS CA L+SL GRQ+ +V+ + D++V S + +Y CG
Sbjct: 327 VRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAK 386
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN +I GYA + E+A+ ++ ++ SG + VT +AILT CS+ G
Sbjct: 387 LVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGG 446
Query: 104 LVYAEVEIFNSMEHDHEVKP-------------------KCL-----MPYKDDLVVWGDL 139
+ +EIF SME V P K + M K D VWG L
Sbjct: 447 KLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGAL 506
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ HS + LA+ AA
Sbjct: 507 LGACKTHSRLDLAEVAA 523
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P Q FT +L++CA +L GR++ I + D+ VG+ I++Y CG
Sbjct: 605 VKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAH 664
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+W MI GYA++ ++A+ L+ + GVK D +TFV L+ C+H+G
Sbjct: 665 LVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAG 724
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ + F SM+ D ++P+ C+ M K D +WG L
Sbjct: 725 LIKEGLHHFESMK-DFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGAL 783
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +CQVH +V LA+K A
Sbjct: 784 LGACQVHLDVELAEKVA 800
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F ++L +C++ S+L GRQI RI+K GY D V +A +++Y CG
Sbjct: 403 IEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDAR 462
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN MI Y ++E + A++ ++ ++ G+K D TF +IL C
Sbjct: 463 NVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCK 519
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F +L++CA ++ G ++ + I+ G+ D+FVG+A IN++ CG
Sbjct: 201 VKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDAL 260
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+TW MI G A + +QA +L++ + GV+ D V FV++L C+H
Sbjct: 261 KVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNH 318
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 63/118 (53%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F ++L +C +L G+++ R+ + G +I+VG+A +++Y CG
Sbjct: 302 VQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDAL 361
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W MI G+A++ +E+A + +I SG++ + VTF++IL CS
Sbjct: 362 EVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSR 419
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P FT++L+ C +L LG+ + + I++ G+ +D+ + +A ++++ NCG
Sbjct: 504 IKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAM 563
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I G+ ++ + A +K + SGVK D +TF +L C+
Sbjct: 564 NLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACA 620
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 17/123 (13%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT----------- 56
++++L C K +L G +I I DIF+ + I++Y CG T
Sbjct: 107 YSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMP 166
Query: 57 ------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
WN ++ GY ++ E+A L++ ++ GVK D TFV +L C+ + V E
Sbjct: 167 DKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGE 226
Query: 111 IFN 113
+F+
Sbjct: 227 LFS 229
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P TVLS+CA+L +L LG+ + G +++VG+A +++Y CG+
Sbjct: 327 VPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAI 386
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN +I G A + A++L+ + +G K DG+TF+ IL C+H G
Sbjct: 387 SVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMG 446
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F SM D+ + P+ C+ MP + D V+W L
Sbjct: 447 LVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGL 506
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C+++ NV LA+ A
Sbjct: 507 LGACRIYKNVELAELA 522
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 17/81 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F F VL SC K+++L G Q+ ++K G+ + FVG+ I++Y G
Sbjct: 132 IRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAY 191
Query: 55 -----------VTWNEMIHGY 64
V W MI+GY
Sbjct: 192 KIFCEMFERNVVAWTSMINGY 212
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 41/194 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F +VL++CA L +L LG I T I ++ ND+FV +A I++Y CG
Sbjct: 368 VKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAE 427
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW MI G A N + E+A+ ++ +++ + + D +T++ +L+ C+H+G
Sbjct: 428 SIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTG 487
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F M H ++P CL MP K + +VWG L
Sbjct: 488 LVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGAL 547
Query: 140 VSSCQVHSNVRLAK 153
++ C+V+ +A+
Sbjct: 548 LAGCRVYRESDMAE 561
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 48/151 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT VLS+C+KL L G+++ + + +++ + +A I++Y +CG
Sbjct: 236 VLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSAL 295
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V+W MI GY + ++
Sbjct: 296 GIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKE 355
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
A+ L++++ A+ VK D T V++LT C+H G
Sbjct: 356 ALELFRNMQATNVKPDEFTMVSVLTACAHLG 386
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F + + +L GRQ+ ++K G ++FV +A + +Y CG
Sbjct: 135 VKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTAR 194
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+TWN +I Y + E++ L+ + V VT V +L+ CS
Sbjct: 195 GVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACS 251
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF 92
WN MI GY+ ++ + +SLY +++ GVK D TF
Sbjct: 107 WNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTF 142
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 41/194 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F +VL++CA L +L LG I T I ++ ND+FV +A I++Y CG
Sbjct: 347 VKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAE 406
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW MI G A N + E+A+ ++ +++ + + D +T++ +L+ C+H+G
Sbjct: 407 SIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTG 466
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F M H ++P CL MP K + +VWG L
Sbjct: 467 LVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGAL 526
Query: 140 VSSCQVHSNVRLAK 153
++ C+V+ +A+
Sbjct: 527 LAGCRVYRESDMAE 540
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 48/151 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT VLS+C+KL L G+++ + + +++ + +A I++Y +CG
Sbjct: 215 VLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSAL 274
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V+W MI GY + ++
Sbjct: 275 GIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKE 334
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
A+ L++++ A+ VK D T V++LT C+H G
Sbjct: 335 ALELFRNMQATNVKPDEFTMVSVLTACAHLG 365
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F + + +L GRQ+ ++K G ++FV +A + +Y CG
Sbjct: 114 VKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTAR 173
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+TWN +I Y + E++ L+ + V VT V +L+ CS
Sbjct: 174 GVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACS 230
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF 92
WN MI GY+ ++ + +SLY +++ GVK D TF
Sbjct: 86 WNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTF 121
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F ++LS + + ++ G QI +RI+K G+ +++ + +A I++Y CG
Sbjct: 352 FTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNE 411
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
++W MI G+A++ + +A+ + ++ +GV + VT++A+L+ CSH GL+
Sbjct: 412 MGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEG 471
Query: 109 VEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQ 144
++ F SM+ +H + P+ C+ MP+K D +V + +C+
Sbjct: 472 LKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACR 531
Query: 145 VHSNVRLAKKAA 156
VH N+ L K AA
Sbjct: 532 VHGNMDLGKHAA 543
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 17/122 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F++VL +CA LS ++LG Q+ +VK + VG++ I++Y CG
Sbjct: 246 VKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENAR 305
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N +++ YA++ E+A L+ +I +G + TF ++L+ S G
Sbjct: 306 KAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIG 365
Query: 104 LV 105
+
Sbjct: 366 AI 367
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCG------ 54
YP ++ FT V +C+ ++ LG+ I ++K GY +D+ VG A I+++
Sbjct: 39 YPNEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESA 98
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
VTW MI + + + A+ L+ D++ SG D T +++ C+
Sbjct: 99 YKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEM 158
Query: 103 GLV 105
GL+
Sbjct: 159 GLL 161
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 21/120 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P +F + V+S+CA++ L LGRQ ++K G D+ VG + +++Y C
Sbjct: 143 PDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDA 202
Query: 54 -----------GVTWNEMIHGYAENEYVE-QAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W +I GY ++ + +AI L+ +++ VK + TF ++L C++
Sbjct: 203 RKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACAN 262
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 95/190 (50%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
+ VL +CA +L G+ I +++K ++ VG++ I++YC CG
Sbjct: 2229 LSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK 2288
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+W M+ GY + ++A+ ++ ++ +GVK + +TFV++L CSH+GLV
Sbjct: 2289 EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWH 2348
Query: 111 IFNSMEHDHEVKP---------------KCL---------MPYKDDLVVWGDLVSSCQVH 146
FN+M+H ++++P CL M K D VVWG L+ +C++H
Sbjct: 2349 WFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIH 2408
Query: 147 SNVRLAKKAA 156
NV L + AA
Sbjct: 2409 KNVDLGEIAA 2418
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 25/124 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT+ F + SC+ L L GR + G+ D+FV SA I++Y CG
Sbjct: 2013 PTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARAL 2072
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDII--------ASGVKHDGVTFVAILT 97
V+W MI GY +NE + A+ L+KD + + V D V V++L+
Sbjct: 2073 FDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLS 2132
Query: 98 PCSH 101
CS
Sbjct: 2133 ACSR 2136
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 17/140 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
++P ++ +++ +C ++ L LGR I +K+ +++G+A I++Y CG
Sbjct: 253 IFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAI 312
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN MI + ++A++L+ ++ VK D +TF+ +L C H
Sbjct: 313 EVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIK 372
Query: 104 LVYAEVEIFNSMEHDHEVKP 123
V F M + + P
Sbjct: 373 NVKEGCAYFTRMTQHYGIAP 392
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 18/116 (15%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+VLS+C+++S + + +VK G+ I VG+ ++ Y CG
Sbjct: 2129 SVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEK 2188
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSHSGLVYA 107
++WN MI YA++ +A+ ++ ++ GV+++ VT A+L C+H+G + A
Sbjct: 2189 DDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRA 2244
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 48/149 (32%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F F V+ +C S+ LG+ + ++K G+ D+FV + I+ Y CG
Sbjct: 125 KFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFE 184
Query: 55 --------------------------------------VTWNEMIHGYAENEYVEQAISL 76
V+W MI+GY N+ E+A+ L
Sbjct: 185 KMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALEL 244
Query: 77 YKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+K + A + + T V+++ C+ G++
Sbjct: 245 FKRMQAENIFPNEYTMVSLIKACTEMGIL 273
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 20/108 (18%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCN-----------------C 53
+L +C L RQI +I++ G ND + I++Y C
Sbjct: 33 LLQNCKNFKHL---RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC 89
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
TWN +I N EQA+ LYK+++ G+ D TF ++ C++
Sbjct: 90 TFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTN 137
>gi|223948849|gb|ACN28508.1| unknown [Zea mays]
gi|413937254|gb|AFW71805.1| hypothetical protein ZEAMMB73_337002 [Zea mays]
Length = 608
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 48/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN---DIFVGSAPINIYCNCG--- 54
V PT F + L +CAKL + G+++ I++ G+ +IF+ +A +++Y CG
Sbjct: 300 VSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMM 359
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN M+ G++ N +Q+++++++++ +GV+ VTF+A+LT CS
Sbjct: 360 AAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACS 419
Query: 101 HSGLVYAEVEIFNSMEHDHEVKPKC------------------LMPYKDDLV-------- 134
HSGLV + SME DH V+P+ + DL
Sbjct: 420 HSGLVSNGRLVLESME-DHGVEPRAEHYAAFIDALGRNHQLEEATEFIKDLPSRIGPGTA 478
Query: 135 -VWGDLVSSCQVHSNVRLAKKAA 156
WG L+ +C++H N+ LA++ A
Sbjct: 479 GSWGALLGACRLHGNIELAEEVA 501
>gi|293336045|ref|NP_001168520.1| uncharacterized protein LOC100382300 [Zea mays]
gi|195615774|gb|ACG29717.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
gi|223946951|gb|ACN27559.1| unknown [Zea mays]
Length = 616
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 102/203 (50%), Gaps = 48/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN---DIFVGSAPINIYCNCG--- 54
V PT F + L +CAKL + G+++ I++ G+ +IF+ +A +++Y CG
Sbjct: 308 VSPTPFVLVSALGACAKLGLVTRGKELHCFILRRNIGSVPFNIFIHNALVDMYSKCGDMM 367
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN M+ G++ N +Q+++++++++ +GV+ VTF+A+LT CS
Sbjct: 368 AAMAVFDWMPERDFISWNSMVTGFSHNGLGKQSLAIFEEMLVAGVRPTHVTFLAVLTACS 427
Query: 101 HSGLVYAEVEIFNSMEHDHEVKPKC------------------LMPYKDDLV-------- 134
HSGLV + SME DH V+P+ + DL
Sbjct: 428 HSGLVSNGRLVLESME-DHGVEPRAEHYAAFIDALGRNHQLEEATEFIKDLPSRIGPGTA 486
Query: 135 -VWGDLVSSCQVHSNVRLAKKAA 156
WG L+ +C++H N+ LA++ A
Sbjct: 487 GSWGALLGACRLHGNIELAEEVA 509
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 41/187 (21%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
VL++CA L +L LG +I + G+ ++ + + I++Y CG
Sbjct: 265 AVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER 324
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIF 112
V+W+ MI G A + E+A+ L+ D+ G++ +GVTF+ +L CSH GL+ F
Sbjct: 325 TVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFF 384
Query: 113 NSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSN 148
SM D+ + P+ C+ MP K + VVWG L+ +C+VH N
Sbjct: 385 ASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKN 444
Query: 149 VRLAKKA 155
V +A++A
Sbjct: 445 VEMAEEA 451
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 48/151 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F ++VL +C L L GR + + K G+ +++++ + +++Y +CG
Sbjct: 124 VCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEAR 183
Query: 55 -----------VTWN-------------------------------EMIHGYAENEYVEQ 72
VTWN MI GY + ++
Sbjct: 184 LLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKE 243
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
AI L+ + +GVK + VT VA+L C+ G
Sbjct: 244 AIHLFAKMEEAGVKCNEVTVVAVLAACADLG 274
>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
Length = 696
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V ++ F+ L S ++L+ L LG+QI ++ G+ ++ FV S+ I +Y G
Sbjct: 397 VRTDEYAFSAALRSSSELAVLQLGKQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDAR 456
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ E L+ +++ D +TFV ++T CSH+G
Sbjct: 457 KSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAG 516
Query: 104 LVYAEVEIFNSMEHDHEV---------------------KPKCL---MPYKDDLVVWGDL 139
LV EI N+ME + V K K L MP++ D +VW L
Sbjct: 517 LVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTL 576
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H NV LA A
Sbjct: 577 LGACRIHGNVELASDVA 593
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F + L S A +G Q+ + +K G N++F SA +++Y CG
Sbjct: 94 FALGSALRSAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDG 153
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN +I GY E+ + A+ L+ ++ G+ D TF ++LT
Sbjct: 154 MPERNTVSWNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLT 202
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 20/120 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F ++L++ S FL Q+ +IVK G + V +A I Y CG
Sbjct: 192 PDEATFASLLTAVEG-PSCFLMHQLHGKIVKYGSALGLTVLNAAITAYSQCGSLKDSRRI 250
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPCSHSG 103
++WN M+ Y N ++A+ + ++ SGV D +F +I++ CS G
Sbjct: 251 FDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHG 310
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 21/121 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLS-SLFLGRQILTRIVKDGYGNDIFVGSAPINIYC----NC-- 53
V+P + FT+++SSC++ GR I ++K V +A I +Y NC
Sbjct: 292 VHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALEGVTPVCNALIAMYTRYNENCMM 351
Query: 54 --------------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN M+ GY+++ A+ ++ + + V+ D F A L
Sbjct: 352 EDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSS 411
Query: 100 S 100
S
Sbjct: 412 S 412
>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Glycine max]
Length = 733
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F ++VLS C ++ L G+Q+ ++ G ++ V SA I++Y CG
Sbjct: 425 PNEFALSSVLSVCGSMALLEQGKQVHAHLLCIGIDHEAMVHSAIISMYSKCGSVQEASKI 484
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI+GYAE+ Y ++AI+L++ I + G+K D V F+ +LT C+H+G+V
Sbjct: 485 FNGMKINDIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVMFIGVLTACNHAGMV 544
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F M + + + P CL MP+ D VVW L+
Sbjct: 545 DLGFYYFMLMTNVYRISPSKEHYGCLIDLLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLR 604
Query: 142 SCQVHSNVRLAKKAA 156
+C+VH +V + A
Sbjct: 605 ACRVHGDVDRGRWTA 619
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 17/122 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F V+SSCA L++ G QI +++ G N + V ++ I +Y CG
Sbjct: 322 VSPNKYTFAAVISSCANLAAAKWGEQIHGHVLRLGLVNALSVANSIITLYSKCGLLKSAS 381
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W+ +I Y++ Y ++A + G K + ++L+ C
Sbjct: 382 LVFHGITRKDIISWSTIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMA 441
Query: 104 LV 105
L+
Sbjct: 442 LL 443
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 17/111 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F L + A S L G+ I T+ +K G+ FV + +Y CG
Sbjct: 228 FAIALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKPDYVMRLFEKMR 287
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W +I Y + E A+ +K + S V + TF A+++ C++
Sbjct: 288 MPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSCAN 338
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QF + L +CA ++ G + VK G + +FV SA I++Y G
Sbjct: 124 QFMISVALKACALGVNICFGELLHGFSVKSGLIHSVFVSSALIDMYMKVGKIEQGCRVFE 183
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V+W +I G Y + + + ++ S V +D TF L + S L++
Sbjct: 184 KMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMWRSKVGYDSHTFAIALKASADSSLLH 242
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 41/187 (21%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
VL++CA L +L LG +I + G+ ++ + + I++Y CG
Sbjct: 232 AVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER 291
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIF 112
V+W+ MI G A + E+A+ L+ D+ G++ +GVTF+ +L CSH GL+ F
Sbjct: 292 TVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFF 351
Query: 113 NSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSN 148
SM D+ + P+ C+ MP K + VVWG L+ +C+VH N
Sbjct: 352 ASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKN 411
Query: 149 VRLAKKA 155
V +A++A
Sbjct: 412 VEMAEEA 418
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEM 60
V P F ++VL +C L L GR + + K G+ +W M
Sbjct: 157 VCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFR------------------SWTSM 198
Query: 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
I GY + ++AI L+ + +GVK + VT VA+L C+ G
Sbjct: 199 IAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLG 241
>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
Length = 697
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 41/183 (22%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+LSSC+ +L GR++ +K + N+IFVGSA I++Y NCG
Sbjct: 331 ILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKD 390
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113
V WN MI G N Y AI L+ + SG+ D TFV++L CSH+G+VY ++IF
Sbjct: 391 VVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFY 450
Query: 114 SM-EHDHEVKP----KCL-------------------MPYKDDLVVWGDLVSSCQVHSNV 149
M + H++ C+ MP++ D V+ L+ +C++H N+
Sbjct: 451 HMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNI 510
Query: 150 RLA 152
+L
Sbjct: 511 KLG 513
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++VL + A L + + + + V+ G+ ++FV +A +++Y G
Sbjct: 120 PNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQL 179
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN ++ GY+++ + E+AI L+ + G+ D T ++ L P S S
Sbjct: 180 FESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMS-LIPASLS 235
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 17/106 (16%)
Query: 17 KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNE 59
KL L +QI +I+ G ++ F+ ++ +N Y CG V+W
Sbjct: 33 KLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTI 92
Query: 60 MIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+I G A+N+ +AI +++++ K + VT ++L ++ GL+
Sbjct: 93 LISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLI 138
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 21/117 (17%)
Query: 8 FTTVLS---SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC--NC--------- 53
F T++S + + L +G I I++ GY ND + +A ++IY NC
Sbjct: 223 FYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFS 282
Query: 54 ------GVTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPCSHSG 103
W M+ G++ + ++AI + ++ +K D + + IL+ CSHSG
Sbjct: 283 EMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSG 339
>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 754
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 96/191 (50%), Gaps = 41/191 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F ++VLS C+++ ++ G QI + +K G+ +D+ V ++ I++Y CG
Sbjct: 376 PDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKA 435
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ W MI G++++ +QA+ +++D+ +GV+ + VTFV +L+ CSH+G+V
Sbjct: 436 FLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMV 495
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+ F M+ +++KP +C+ M Y+ +W + ++
Sbjct: 496 SQALNYFEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKKMNYEPSEFIWSNFIA 555
Query: 142 SCQVHSNVRLA 152
C+ H N+ L
Sbjct: 556 GCRSHGNLELG 566
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 37/183 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F T+ LS C ++ SL LG Q+ + +K GY +++ V ++ + +Y G
Sbjct: 262 IKPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAH 321
Query: 55 -----------VTWNEMIHGYAEN-----------EYVEQAISLYKDIIASGVKHDGVTF 92
VTWN MI G+A+ + +A+ ++ + SG+K D T
Sbjct: 322 RFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTL 381
Query: 93 VAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLA 152
++L+ CS + +I H +K L D++V L+S ++ A
Sbjct: 382 SSVLSVCSRMLAIEQGEQI-----HAQTIKTGFL----SDVIVSTSLISMYNKCGSIERA 432
Query: 153 KKA 155
KA
Sbjct: 433 SKA 435
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP+ + + VL +C+ L SL LG Q I+K D VGSA ++Y CG
Sbjct: 162 YPSIYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALK 221
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++W + +N + + L+ ++I+ +K + T + L+ C
Sbjct: 222 AFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQC 276
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 19/111 (17%)
Query: 8 FTTVLSSCAKLSSLFLGRQIL-TRIVKDGYGNDIFVGSAPINIYCNCG------------ 54
+ +L C S + G QI+ ++K G ++ FV S +N+Y CG
Sbjct: 67 YVPLLQQCLDKRS-YSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENM 125
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W ++ G+ +N + AI ++++++ +G T A+L CS
Sbjct: 126 PRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACS 176
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P TVLS+CA+L +L LG+ + G +++VG+A +++Y CG+
Sbjct: 390 VPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAI 449
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN +I G A + A++L+ + +G K DG+TF+ IL C+H G
Sbjct: 450 SVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMG 509
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F SM D+ + P+ C+ MP + D V+W L
Sbjct: 510 LVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGL 569
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C+++ NV LA+ A
Sbjct: 570 LGACRIYKNVELAELA 585
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 17/81 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F F VL SC K+++L G Q+ ++K G+ + FVG+ I++Y G
Sbjct: 195 IRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAY 254
Query: 55 -----------VTWNEMIHGY 64
V W MI+GY
Sbjct: 255 KIFCEMFERNVVAWTSMINGY 275
>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
Length = 745
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +V+SSCA L+SL G Q + G + I V +A + +Y CG
Sbjct: 371 PDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRL 430
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W ++ GYA+ ++ I L++ ++A GVK DGVTF+ +L+ CS +G V
Sbjct: 431 FDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFV 490
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
F+SM+ DH + P C+ MP D + WG L+S
Sbjct: 491 EKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLS 550
Query: 142 SCQVHSNVRLAKKAA 156
+C++ ++ + K AA
Sbjct: 551 ACRLRGDMEIGKWAA 565
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q+ F ++L++C LS+L G+QI I++ Y +++FVGSA +++Y C
Sbjct: 272 QYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFR 331
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W +I GY +N E+A+ ++ ++ G+ D T ++++ C++
Sbjct: 332 RMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCAN 385
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 21/133 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P++ +T++ + + L LG+Q +I++ G+G + FVGS +++Y
Sbjct: 136 VRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAK 195
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V +N MI G + VE+A L++ + D +T+ ++T + +G
Sbjct: 196 RAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVM----TDRDSITWTTMVTGFTQNG 251
Query: 104 LVYAEVEIFNSME 116
L +EIF M
Sbjct: 252 LESEALEIFRRMR 264
>gi|8671867|gb|AAF78430.1|AC018748_9 Contains similarity to glycerine-rich protein from Nicotiana glauca
gb|AF151215 and contains multiple PPR PF|01535 repeats
[Arabidopsis thaliana]
Length = 816
Score = 94.7 bits (234), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F++VLS+ A L+ L G QI R+VK ND+ V ++ +++YC CG
Sbjct: 434 VCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAY 493
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N MI GY+ N + ++A+ L+ + +SG + +GVTF+A+L+ C H G
Sbjct: 494 KIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVG 553
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
V + F SM+ + ++P C+ MP K VWG L
Sbjct: 554 YVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSL 613
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+ + H V LA+ AA
Sbjct: 614 LSASKTHLRVDLAELAA 630
>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 849
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 96/189 (50%), Gaps = 41/189 (21%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
+++LS+CA L +++ G++I I+K D+F SA I++Y CG
Sbjct: 555 SSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPE 614
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I Y + V++++ L + G K D VTF+A+++ C+H+G V + +
Sbjct: 615 KNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRL 674
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F M ++ ++P+ C+ MP+K D +WG L+ +C+VH
Sbjct: 675 FRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHR 734
Query: 148 NVRLAKKAA 156
NV LA+ A+
Sbjct: 735 NVELAEIAS 743
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 67/128 (52%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + L +CA ++++ +G+++ ++K+ Y +V SA +++Y CG
Sbjct: 446 IKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSH 505
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI +A+N E+A+ L++ +I GVK++ VT +IL+ C+
Sbjct: 506 YMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLP 565
Query: 104 LVYAEVEI 111
+Y EI
Sbjct: 566 AIYYGKEI 573
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 43/182 (23%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P V+ SCA L +L LGR + G D++VGSA I +Y + G
Sbjct: 145 PDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREV 204
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN M+ GY + V A+ L++ + ASG + T L+ C+ +
Sbjct: 205 FDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADL 264
Query: 106 YAEVEIFNSMEHDHEVKP-------------KC-----------LMPYKDDLVVWGDLVS 141
+ V++ +++ + ++P KC LMP +DDLV W ++S
Sbjct: 265 LSGVQL-HTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMP-RDDLVTWNGMIS 322
Query: 142 SC 143
C
Sbjct: 323 GC 324
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P LS CA + L G Q+ T VK G ++ V + +++Y C
Sbjct: 246 PNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRL 305
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
VTWN MI G +N V+ A+ L+ D+ SG++ D VT ++L
Sbjct: 306 FGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLL 356
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++L + +L+ G++I IV++ D+F+ SA ++IY C
Sbjct: 347 PDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNV 406
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V + MI GY N E A+ +++ ++A G+K + V + L C+
Sbjct: 407 FDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACA 461
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 41/193 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + +VL CA+L +L LG+ I K G+ +I V +A I +Y CG
Sbjct: 245 IEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGR 304
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W+ MI G A + +AI L++++ + ++ +TFV +LT C+H+G
Sbjct: 305 RLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAG 364
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L+ + F SM+ D+ ++P CL MP K D +WG L
Sbjct: 365 LLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSL 424
Query: 140 VSSCQVHSNVRLA 152
+SSC+ H N+++A
Sbjct: 425 LSSCRSHGNLKIA 437
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 21/133 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
++P +F F V+ SCA L LG+Q+ + K G ++ V ++ + +Y C
Sbjct: 113 IFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAH 172
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G+ + +A ++++++ + ++ AI++ + G
Sbjct: 173 RVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTI----FSWTAIVSGYARIG 228
Query: 104 LVYAEVEIFNSME 116
+E F M+
Sbjct: 229 CYADALEFFRRMQ 241
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q +V+S+C+ + +L I T + + G+G + V +A I++Y CG
Sbjct: 352 PDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREV 411
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W+ MI+ +A + + AI L++ + ++ +GVTF+ +L C H+GLV
Sbjct: 412 FENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLV 471
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
++F+SM ++H + P C+ MP+ ++++WG L+S
Sbjct: 472 EEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMS 531
Query: 142 SCQVHSNVRLAKKAA 156
+CQVH L + AA
Sbjct: 532 ACQVHGEAELGEFAA 546
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 17/116 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC----------- 53
+F F ++L + +K+S+ G +I K G+ +D F+ + I +Y +C
Sbjct: 121 RFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFD 180
Query: 54 ------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I GY +N + + A+ L++D+ +S +K D V +L+ C H+G
Sbjct: 181 KMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAG 236
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 48/149 (32%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TVLS+C +L GR I + +GY D + +A IN+Y NCG
Sbjct: 220 PDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKI 279
Query: 55 ----------------------------------------VTWNEMIHGYAENEYVEQAI 74
V W+ MI GYAE++ ++A+
Sbjct: 280 YDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEAL 339
Query: 75 SLYKDIIASGVKHDGVTFVAILTPCSHSG 103
L+ +++ D +T +++++ CSH G
Sbjct: 340 KLFDEMLQKRSVPDQITMLSVISACSHVG 368
>gi|334183275|ref|NP_175765.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806499|sp|Q9C8L6.2|PPR80_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g53600, mitochondrial; Flags: Precursor
gi|332194847|gb|AEE32968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 717
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F++VLS+ A L+ L G QI R+VK ND+ V ++ +++YC CG
Sbjct: 434 VCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAY 493
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N MI GY+ N + ++A+ L+ + +SG + +GVTF+A+L+ C H G
Sbjct: 494 KIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVG 553
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
V + F SM+ + ++P C+ MP K VWG L
Sbjct: 554 YVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSL 613
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+ + H V LA+ AA
Sbjct: 614 LSASKTHLRVDLAELAA 630
>gi|449510831|ref|XP_004163774.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 556
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +++VL SCA L++L+ G I +I++ G+ ++ V S+ I +Y CG
Sbjct: 183 PDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQI 242
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V W +I ++ + + L++ ++ G+K D +TFV++L+ CSH+G V
Sbjct: 243 FEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRV 302
Query: 106 YAEVEIFNSMEHDHEVKP-----KC-------------------LMPYKDDLVVWGDLVS 141
FNSM H + P C LMP K D VWG L+S
Sbjct: 303 EEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLS 362
Query: 142 SCQVHSNVRLAKKAA 156
+C+ HSN+ + K+ A
Sbjct: 363 ACRNHSNLIMGKEVA 377
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 10/103 (9%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEM 60
VYP + F+ VLS+C ++ G Q+ + + K G+ ++FV SA +++Y C +M
Sbjct: 6 VYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCC----DM 61
Query: 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ AE + E L +++ A D V+F ++ + C+++G
Sbjct: 62 L--MAEKVFEEMPTLLLENLTAL----DEVSFSSVFSACANAG 98
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 39/181 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+ F++V S+CA +L G+Q+ +K G N +++ ++ ++Y CG
Sbjct: 84 EVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFS 143
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
VTWN MI Y N E A + + + G D ++ ++L C++ +Y
Sbjct: 144 NTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQ 203
Query: 108 EVEIFNSMEHDHEVK------------PKC--------LMPYKDD--LVVWGDLVSSCQV 145
I N + VK KC + +D +V W ++++CQ
Sbjct: 204 GTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQ 263
Query: 146 H 146
H
Sbjct: 264 H 264
>gi|12324033|gb|AAG51982.1|AC024260_20 hypothetical protein; 70922-66390 [Arabidopsis thaliana]
Length = 839
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F++VLS+ A L+ L G QI R+VK ND+ V ++ +++YC CG
Sbjct: 434 VCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAY 493
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N MI GY+ N + ++A+ L+ + +SG + +GVTF+A+L+ C H G
Sbjct: 494 KIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVG 553
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
V + F SM+ + ++P C+ MP K VWG L
Sbjct: 554 YVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSL 613
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+ + H V LA+ AA
Sbjct: 614 LSASKTHLRVDLAELAA 630
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 94/193 (48%), Gaps = 41/193 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + +VL CA+L +L LG+ I K G+ +I V +A I +Y CG
Sbjct: 261 IEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGR 320
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W+ MI G A + +AI L++++ + ++ +TFV +LT C+H+G
Sbjct: 321 RLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAG 380
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L+ + F SM+ D+ ++P CL MP K D +WG L
Sbjct: 381 LLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSL 440
Query: 140 VSSCQVHSNVRLA 152
+SSC+ H N+++A
Sbjct: 441 LSSCRSHGNLKIA 453
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P +F F V+ SCA L LG+Q+ + K G ++ V ++ + +Y C
Sbjct: 158 IFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAH 217
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+W ++ GYA A+ ++ + G++ D ++ V++L C+
Sbjct: 218 RVFEEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQ 277
Query: 102 SG 103
G
Sbjct: 278 LG 279
>gi|357446017|ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482334|gb|AES63537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 622
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 88/192 (45%), Gaps = 41/192 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P V+S+C LSS G I I+K G G IFV +A IN+Y CG
Sbjct: 373 PNYVTLLAVISACTNLSSFKHGGVIHGYILKFGIGFSIFVCNALINMYAKCGSLDDSRKI 432
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN MI Y + Y EQA+ + ++ GVK D VTF+A+L+ C+H+GLV
Sbjct: 433 FLEMPSRDSVTWNSMISAYGLHGYGEQALQHFYEMKERGVKLDAVTFLAVLSACNHAGLV 492
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
++F + D E+ CL MP K +W LVS
Sbjct: 493 TEGQQLFEQVNADCEIPITIEHYACLIDLHGRSGKLEDALEILRTMPMKPSARIWSSLVS 552
Query: 142 SCQVHSNVRLAK 153
SC++H + +A+
Sbjct: 553 SCKLHGRLDIAE 564
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 22/131 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSL--FLGRQILTRIVKDGY---GNDIFVGSAPINIYCNCG--- 54
P +++S C + L +GRQI +V DG + +F+ +A ++ Y CG
Sbjct: 165 PKPELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCGDSL 224
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W +I G A N+ + A++ Y+++ GV + VT +A+L C+
Sbjct: 225 MARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTLIALLAACA 284
Query: 101 HSGLVYAEVEI 111
G V EI
Sbjct: 285 RPGFVKYGKEI 295
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 76/187 (40%), Gaps = 42/187 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +L++CA+ + G++I + G+ + A I +YC CG
Sbjct: 269 VSPNRVTLIALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQSLHLA 328
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS-- 100
V W+ +I YA ++A+ L+ + + + VT +A+++ C+
Sbjct: 329 ERIFEGSSLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNL 388
Query: 101 ----HSGLVYAEVEIF---------NSMEH--------DHEVKPKCLMPYKDDLVVWGDL 139
H G+++ + F N++ + D K MP +D V W +
Sbjct: 389 SSFKHGGVIHGYILKFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDS-VTWNSM 447
Query: 140 VSSCQVH 146
+S+ +H
Sbjct: 448 ISAYGLH 454
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P QF F++VL SCA L L G+Q+ I K G D + SA +++Y CG
Sbjct: 473 IAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAK 532
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G+A++ V+ A+ L++ ++ GV+ + VTF+ +L CSH G
Sbjct: 533 KVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGG 592
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV ++ F M+ + + P+ C+ MP + + +VW L
Sbjct: 593 LVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTL 652
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH NV L + AA
Sbjct: 653 LGACRVHGNVELGELAA 669
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P QF ++ +L C L S+ LG + +IV G+ + FV +A +N+Y
Sbjct: 167 IFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSY 226
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95
V+WN MI G+ N+ A L+ ++ GV D TF+ +
Sbjct: 227 KVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGV 278
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 18/119 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG-NDIFVGSAPINIYCNCG----- 54
+Y + + +V ++ A L L LG+++ R +K G N + + +A N Y CG
Sbjct: 371 IYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDV 430
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W ++ Y++ ++AI ++ ++ A G+ + TF ++L C++
Sbjct: 431 RKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCAN 489
>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
Length = 743
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +V+SSCA L+SL G Q + + G + I V +A I +Y CG
Sbjct: 367 IEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSN 426
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W ++ GYA+ + I L++ ++ G+K D VTF+A+L+ CS +G
Sbjct: 427 QLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAG 486
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV + F SM DH + P C+ MP+ D + W L
Sbjct: 487 LVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATL 546
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC+++ N + K AA
Sbjct: 547 LSSCRLYGNEEIGKWAA 563
Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 67/114 (58%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q+ F +VL++C L +L G++I T I++ GY +++FVGSA +++YC C
Sbjct: 270 QYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFK 329
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W M+ GY +N + E+A+ ++ D+ +G++ D T ++++ C++
Sbjct: 330 RMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCAN 383
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 48/144 (33%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F+T+L + + LGRQI +IVK G+G +FVGS+ +++Y G
Sbjct: 137 NRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVF 196
Query: 55 ---------------------------------------VTWNEMIHGYAENEYVEQAIS 75
++W MI G +N +A+
Sbjct: 197 DEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMD 256
Query: 76 LYKDIIASGVKHDGVTFVAILTPC 99
L++D+ G+ D TF ++LT C
Sbjct: 257 LFRDMRQEGMAMDQYTFGSVLTAC 280
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P QF F++VL SCA L L G+Q+ I K G D + SA +++Y CG
Sbjct: 473 IAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAK 532
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G+A++ V+ A+ L++ ++ GV+ + VTF+ +L CSH G
Sbjct: 533 KVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGG 592
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV ++ F M+ + + P+ C+ MP + + +VW L
Sbjct: 593 LVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPNEMVWQTL 652
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH NV L + AA
Sbjct: 653 LGACRVHGNVELGELAA 669
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 17/112 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P QF ++ +L C L S+ LG + +IV G+ + FV +A +N+Y
Sbjct: 167 IFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSY 226
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95
V+WN MI G+ N+ A L+ ++ GV D TF+ +
Sbjct: 227 KVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGV 278
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 57/119 (47%), Gaps = 18/119 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG-NDIFVGSAPINIYCNCG----- 54
+Y + + +V ++ A L L LG+++ R +K G N + + +A N Y CG
Sbjct: 371 IYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDV 430
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W ++ Y++ ++AI ++ ++ A G+ + TF ++L C++
Sbjct: 431 RKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCAN 489
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F +LS+ + ++SL G+QI ++ G VG+A +Y G
Sbjct: 372 PNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKV 431
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+W MI A++ E+AI L++ ++ G+K D +T+V +L+ C+H GL
Sbjct: 432 FNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGL 491
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLV 140
V F+ M++ H++ P C+ MP + D++ WG L+
Sbjct: 492 VEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLL 551
Query: 141 SSCQVHSNVRLAKKAA 156
SSC+V+ NV LAK AA
Sbjct: 552 SSCKVYKNVDLAKVAA 567
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 21/140 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PTQF T VL+SCA S +G+++ + +VK G + V ++ +N+Y G
Sbjct: 103 VLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAK 162
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI + V+ A++ ++ + + D V++ +++ C+ G
Sbjct: 163 VVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELL----SERDIVSWNSMIAGCNQHG 218
Query: 104 LVYAEVEIFNSMEHDHEVKP 123
++ F+S+ D +KP
Sbjct: 219 FDNEALQFFSSILKDTSLKP 238
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 53/148 (35%), Gaps = 50/148 (33%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F + LS+CA L L G+QI IV+ + VG+A I++Y G
Sbjct: 238 PDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRI 297
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V W MI GY +N
Sbjct: 298 IEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNND 357
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCS 100
AI ++K +++ G + + T A+L+ S
Sbjct: 358 AIEVFKTMVSEGPRPNSFTLAAMLSASS 385
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P VL +CA LS+L G++I I+++GY +D V +A +++Y CGV
Sbjct: 430 PDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 489
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+W MI GY + Y +AI+ + ++ +G++ D V+F++IL CSHSGL+
Sbjct: 490 FDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F M++D ++PK C+ +P D +WG L+
Sbjct: 550 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLC 609
Query: 142 SCQVHSNVRLAKKAA 156
C+ + ++ LA+K A
Sbjct: 610 GCRNYHDIELAEKVA 624
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+VL CA +L LG+ + + +K + I + +++Y CG
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 315
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY + + AI L + + GVK D V +IL C+ SG
Sbjct: 316 NVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSG 366
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GY N E+ + +YK ++ G+ D T +++L C++SG
Sbjct: 217 ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSG 265
>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 998
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 40/194 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F F V+++ + ++SL G+Q +++K G+ +D FV + +++Y G
Sbjct: 543 PNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKA 602
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
WN MI YA++ E+A+ +++D+I G+K + VTFV +L+ CSH+GL+
Sbjct: 603 FISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSACSHTGLL 662
Query: 106 YAEVEIFNSMEH-------DHEVKPKCL----------------MPYKDDLVVWGDLVSS 142
+ F+SM +H V L MP K VVW L+S+
Sbjct: 663 DLGFDHFDSMSQFGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAVVWRSLLSA 722
Query: 143 CQVHSNVRLAKKAA 156
C+V NV L AA
Sbjct: 723 CRVSGNVELGTYAA 736
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 70/171 (40%), Gaps = 28/171 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F ++L A L L L QI I+K G D F GSA I++Y C
Sbjct: 442 PTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDARLV 501
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V W M GY + E+++ LYK + S +K + TF A++T S+
Sbjct: 502 FEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAASN---- 557
Query: 106 YAEVEIFNSMEHDHEVKPKCL-MPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155
S+ H + + + M + DD V LV ++ A KA
Sbjct: 558 ------IASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSIEEAHKA 602
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F T+VL+SC L +L GRQ+ +K ND FV + I++Y C
Sbjct: 341 PDAFGCTSVLNSCGSLVALEKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKV 400
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V++N MI GY+ + + +A+ L++++ S + FV++L
Sbjct: 401 FNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLL 451
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ ++VLS+C L L G+QI +++ G D+ + + I+ Y C
Sbjct: 238 VCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGR 297
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+W +I G +N + A+ L+ ++ G D ++L C
Sbjct: 298 KLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSC 353
Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 17/114 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC----------- 51
P ++ +V+ +C + L QI +VK GY D++V ++ I+ Y
Sbjct: 139 PNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLL 198
Query: 52 ------NCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
TW +I GY++ + ++ L+ + V D ++L+ C
Sbjct: 199 FDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSAC 252
>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 40/194 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T +LS C L S LG+QI T +K G +++ V +A +++Y CG
Sbjct: 548 PNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCADSHKVF 607
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
TWN I G A++ +AI +Y+ + + GV + VTFV +L CSH+GLV
Sbjct: 608 DSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVD 667
Query: 107 AEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSS 142
+ F SM D+ + P C+ MP + D V+W L+ +
Sbjct: 668 EGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGA 727
Query: 143 CQVHSNVRLAKKAA 156
C++H N + ++AA
Sbjct: 728 CKIHKNAEIGRRAA 741
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 14 SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-----------------GVT 56
+C+ + +L GRQ+ + VK G + +V +A I++Y C V+
Sbjct: 427 ACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVS 486
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116
WN I +N +E A ++ ++++ D V++ I++ + + VE F +M
Sbjct: 487 WNSFIAALVQNNMLEDARHIFDNMLS----RDVVSWTTIISAYAQAERGDEAVEFFKTML 542
Query: 117 HDHEVKP 123
H+HE KP
Sbjct: 543 HEHE-KP 548
>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 43/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +++LS+CA L L LG QI ++V + D+ + ++ + +Y CG
Sbjct: 415 PDRHTLSSILSACAGLVDLVLGTQI-HQLVTKAFIADLPINNSLVTMYSRCGAIVEARMV 473
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
++WN MI GYA + + +A+ L+ + V+ +TF+++L C+H+GL
Sbjct: 474 FDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGL 533
Query: 105 VYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLV 140
+ FNSM + H +KP+ MP + D VWG L+
Sbjct: 534 IEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALL 593
Query: 141 SSCQVHSNVRLAKKAA 156
+C+VH+NV +A+ AA
Sbjct: 594 GACKVHNNVEMARAAA 609
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 20/103 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + ++S +++ SL L + RI + V+WN MI
Sbjct: 349 PDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSL------------------VSWNSMIS 390
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
GY +NE + A++++ + G K D T +IL+ C +GLV
Sbjct: 391 GYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSAC--AGLV 431
>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Cucumis sativus]
Length = 664
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 43/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +++LS+CA L L LG QI ++V + D+ + ++ + +Y CG
Sbjct: 415 PDRHTLSSILSACAGLVDLVLGTQI-HQLVTKAFIADLPINNSLVTMYSRCGAIVEARMV 473
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
++WN MI GYA + + +A+ L+ + V+ +TF+++L C+H+GL
Sbjct: 474 FDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGL 533
Query: 105 VYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLV 140
+ FNSM + H +KP+ MP + D VWG L+
Sbjct: 534 IEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSMPCEPDKAVWGALL 593
Query: 141 SSCQVHSNVRLAKKAA 156
+C+VH+NV +A+ AA
Sbjct: 594 GACKVHNNVEMARAAA 609
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 20/103 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + ++S +++ SL L + RI + V+WN MI
Sbjct: 349 PDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSL------------------VSWNSMIS 390
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
GY +NE + A++++ + G K D T +IL+ C +GLV
Sbjct: 391 GYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSAC--AGLV 431
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +VLS+CA + +L GR I + G G ++++G+A I++Y CG
Sbjct: 242 VVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMYAKCGTMEEAR 301
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W+ MI G + ++A Y ++ GVK + VTF+ +L+ CSH+G
Sbjct: 302 RIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNEVTFMGLLSACSHAG 361
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +E+F+ M ++ + PK C+ MP + +++VWG L
Sbjct: 362 LVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLINSMPIEPNVIVWGAL 421
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C++H + R ++ A
Sbjct: 422 LGGCRIHKDFRRGERVA 438
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 49/150 (32%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINI------------- 49
P ++ +T+++ +CA L ++ G ++ ++K G N+I +G++ +++
Sbjct: 111 PNEYIYTSLIKACAGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAGQV 170
Query: 50 ------------------YCNCG-----------------VTWNEMIHGYAENEYVEQAI 74
YC CG ++WN MI GY +N AI
Sbjct: 171 FDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGKYSDAI 230
Query: 75 SLYKDI-IASGVKHDGVTFVAILTPCSHSG 103
++ ++ GV D VT V++L+ C+H G
Sbjct: 231 EVFHEMQKVGGVVPDDVTLVSVLSACAHVG 260
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P VL +CA LS+L G++I I+++GY +D V +A +++Y CGV
Sbjct: 430 PDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLL 489
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+W MI GY + Y +AI+ + ++ +G++ D V+F++IL CSHSGL+
Sbjct: 490 FDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLL 549
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F M++D ++PK C+ +P D +WG L+
Sbjct: 550 EQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLC 609
Query: 142 SCQVHSNVRLAKKAA 156
C+ + ++ LA+K A
Sbjct: 610 GCRNYHDIELAEKVA 624
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 17/111 (15%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+VL CA +L LG+ + + +K + I + +++Y CG
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGER 315
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY + + AI L + + GVK D V +IL C+ SG
Sbjct: 316 NVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSG 366
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GY N E+ + +YK ++ G+ D T +++L C++SG
Sbjct: 217 ISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSG 265
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+++VL CA L S G+++ + I + G D +G ++ Y CG
Sbjct: 102 YSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTME 161
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86
WN M+ YA+ +++I L+K ++ G++
Sbjct: 162 KKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIE 197
>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
Length = 449
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT +VL++CA +L +G+QI +R+ G+ + + +A +++Y CG
Sbjct: 73 IPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSS 132
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI A++ ++A+ L+K++ G+ D TF+ +L CSH+G
Sbjct: 133 KVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAG 192
Query: 104 LVYAEVEIFNSMEHDHEVKP------KCL------------------MPYKDDLVVWGDL 139
L+ +E F+SM D+ + P + L MP+ + V W L
Sbjct: 193 LIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKTL 252
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C++HS A K A
Sbjct: 253 LNACRIHSQAERATKVA 269
>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
F F+ ++ CA+L+S+ +Q +++ G+G+DI +A ++ Y G
Sbjct: 177 HFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFD 236
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
++WN +I GY + +A+ L++ +I + + +TF+A+L+ CSHSGL
Sbjct: 237 KMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSER 296
Query: 108 EVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDLVSSC 143
EIF SM D+ +KP+ + P+K +W L+++C
Sbjct: 297 GWEIFQSMGRDNRIKPRAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTAC 356
Query: 144 QVHSNVRLAKKAA 156
+V+ N L K AA
Sbjct: 357 RVNENFELGKFAA 369
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 17/113 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F ++ + A L + +GRQ+ +K G G+DIFV A I++Y CG
Sbjct: 77 FTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEE 136
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN +I GYA + Y E+A+ +Y ++ SGVK D TF I+ C+
Sbjct: 137 MPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICAR 189
>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 743
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P F +V+SSCA L+SL G Q + + G + V +A I +Y CG
Sbjct: 367 IHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAH 426
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W ++ GYA+ + ISL++ ++A G+ DGVTFV +L+ CS +G
Sbjct: 427 QLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAG 486
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F M +H + P C+ MP+ D + W L
Sbjct: 487 LVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATL 546
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC+++ N+ + K AA
Sbjct: 547 LSSCRLNGNLEIGKWAA 563
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QF F +VL++C +L G+QI I++ Y ++IFVGSA +++YC C
Sbjct: 270 QFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFR 329
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W M+ GY +N Y E+A+ ++ D+ + + D T ++++ C++
Sbjct: 330 KMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCAN 383
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 30/157 (19%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F+T+L + + LGRQI +I K GY + +FVGS +++Y G
Sbjct: 137 NRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIF 196
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V +N MI G ++ +A L+ ++ + D +++ I+T + +GL
Sbjct: 197 EEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNM----PEKDSISWTTIITGLTQNGLFK 252
Query: 107 AEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143
V+ F M ++ C+ D +G ++++C
Sbjct: 253 EAVDKFKEM----GIEGFCM-----DQFTFGSVLTAC 280
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 19/104 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P F + T+LS+ +KL L Q + R+ +D+ V+WN ++
Sbjct: 69 PNLFSWNTLLSAYSKLGYL----QDMQRVFDSMPNHDV--------------VSWNSLLS 110
Query: 63 GYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSGLV 105
GYA N + +++ +Y ++ G V + +TF +L S+ G V
Sbjct: 111 GYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFV 154
>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Brachypodium distachyon]
Length = 874
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 42/192 (21%)
Query: 3 PTQFPFTTVLSSCAK-LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
P +F ++ + +CA + + GRQ +K Y + I VGSA + +Y G
Sbjct: 499 PNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARI 558
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+WN MI GYA++ Y ++A+ ++ + G++ DG TF+A++ C+H+GL
Sbjct: 559 VFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGL 618
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLV 140
V + F+SM DH + P C+ MP+ +VW L+
Sbjct: 619 VKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLL 678
Query: 141 SSCQVHSNVRLA 152
+C+VH NV L
Sbjct: 679 GACRVHKNVELG 690
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 40/192 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+P F FT+VLS+ A ++ LGR++ + VK G + +FV ++ IN+Y CG
Sbjct: 197 VWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAK 256
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN ++ G NE+ +A+ L+ D AS K T+ ++ C++
Sbjct: 257 AVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLK 316
Query: 104 LVYAEVEIF------------NSMEHDHEVKPKC-----------LMPYKDDLVVWGDLV 140
+ ++ N M + KC LMP ++V W ++
Sbjct: 317 QLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMI 376
Query: 141 SSCQVHSNVRLA 152
C ++++ LA
Sbjct: 377 GGCIQNADIPLA 388
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 18/112 (16%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+Q ++TV+ CA L L L RQ+ + ++K G+ +D V +A ++ Y CG
Sbjct: 301 SQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIF 360
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+W MI G +N + A +L+ + VK + T+ +LT
Sbjct: 361 LLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLT 412
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG------------- 54
+ VL C + G Q+ VK G+ ++ VG+A +++Y CG
Sbjct: 103 SRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMP 162
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW ++ GY + ++L+ + A GV + TF ++L+ + G V
Sbjct: 163 KRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAV 217
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 41/194 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V +F +V+++CA+L +L +G + + + G D FVG+A I++Y CG
Sbjct: 273 VSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERAL 332
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW +I G A N Y E+AI ++ +I D VTF+ +LT C+H+G
Sbjct: 333 DVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAG 392
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDL 139
LV E F SM + + P + MP + +WG L
Sbjct: 393 LVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTL 452
Query: 140 VSSCQVHSNVRLAK 153
+++C+VH N + +
Sbjct: 453 LAACRVHGNSEIGE 466
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 57/150 (38%), Gaps = 49/150 (32%)
Query: 3 PTQFPFTTVLSSCAK-LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
PT + +VLS+C K + LG Q+ R+V G D+ V +A +++Y C
Sbjct: 142 PTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWK 201
Query: 55 -----------------------------------------VTWNEMIHGYAENEYVEQA 73
V+W MI GY + +A
Sbjct: 202 LFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREA 261
Query: 74 ISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ +++++ S V D T V+++T C+ G
Sbjct: 262 LEMFREMQCSNVSADEFTMVSVITACAQLG 291
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 97/196 (49%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + +TV+S+CA L L +G+++ V++G+ D+++GSA +++Y CG
Sbjct: 1035 IIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGSLERAL 1094
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN +I G A + + ++A+ ++ + VK + VTFV++ T C+H+G
Sbjct: 1095 LVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAG 1154
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV I+ SM D+ + C+ M ++ + V+WG L
Sbjct: 1155 LVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELIGSMEFEPNAVIWGAL 1214
Query: 140 VSSCQVHSNVRLAKKA 155
+ C++H N+ +A+ A
Sbjct: 1215 LDGCRIHKNLEIAEIA 1230
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI+GY+ N+ +AI+++ ++ G+ D VT +++ C+H G++
Sbjct: 1005 ISWTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVL 1055
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 41/192 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T +LS+CA+L +L LG+ + + + + I+V +A I +Y CG
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN MI GY + + ++A++++ +++ SG+ VTF+ +L CSH+GLV
Sbjct: 478 FDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLV 537
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
EIFNSM H + +P C+ MP + VW L+
Sbjct: 538 KEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLG 597
Query: 142 SCQVHSNVRLAK 153
+C++H + LA+
Sbjct: 598 ACRIHKDTNLAR 609
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 19/115 (16%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG--------------- 54
+L + A+L L LG QI + K G Y +D +V + I++Y CG
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHD-YVLTGFISLYSKCGKIKMASTLFREFRRP 285
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V +N MIHGY N E ++SL+K+++ SG K T V+++ H L+YA
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYA 340
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI GY +N E AISL++++ S + VT IL+ C+ G
Sbjct: 387 SWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLG 434
>gi|449448934|ref|XP_004142220.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Cucumis sativus]
gi|449502632|ref|XP_004161699.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Cucumis sativus]
Length = 524
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 96/200 (48%), Gaps = 47/200 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F F T+L++C +L +GR + + VK G+ + + V +A I++YC CG
Sbjct: 227 LQPNEFTFVTILTACTGSGALGVGRSLHCQTVKMGFHSYLHVANALISMYCKCGALNFAL 286
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHS 102
V+WN MI GYA++ +AI L+K + V+ D +TF+ +L+ C H+
Sbjct: 287 YIFEAMEVKDTVSWNSMIAGYAQHGLSLRAIDLFKAMRKQKQVEADAITFLGVLSSCRHA 346
Query: 103 GLVYAEVEIFNSM-------EHDHEVKPKCL-------------------MPYKDDLVVW 136
G V FN M E DH C+ MP + +VW
Sbjct: 347 GFVEEGRHYFNLMVELGLKPELDHY---SCVIDLLGRAGLLKEAQNFIEKMPITPNSIVW 403
Query: 137 GDLVSSCQVHSNVRLAKKAA 156
G L+S+C++H NV + KAA
Sbjct: 404 GSLLSACRLHGNVWIGLKAA 423
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 17/112 (15%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
++VLS C +L G Q + ++ G+ +++VGS+ +++Y CG
Sbjct: 134 SSVLSLCNSQRNLRGGIQYHSVAIRTGFIANVYVGSSLVSLYGKCGELSNAYRVFDEMPV 193
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G+A V + L++++ ++ + TFV ILT C+ SG
Sbjct: 194 RNVVSWTAIIAGFAVEWQVNMCLELFQEMKRMALQPNEFTFVTILTACTGSG 245
>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 96/206 (46%), Gaps = 53/206 (25%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKD---------GYGNDIFVGSAPINIYCNC 53
P F F VL +CA+L L LG +I T +VK+ G ++FVG++ +++Y C
Sbjct: 110 PNNFTFPFVLKACARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKC 169
Query: 54 G-----------------VTWNEMIHGYAENEYVEQAISLYKDIIAS---GVKHDGVTFV 93
G V+W MI GYA N ++AI L+ + G+K DG TF+
Sbjct: 170 GNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFI 229
Query: 94 AILTPCSHSGLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPY 129
+L C+H+GLV FNSM + P C+ MP
Sbjct: 230 GLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPM 289
Query: 130 KDDLVVWGDLVSSCQVHSNVRLAKKA 155
+ + +VWG L+ +C++H + +LA+ A
Sbjct: 290 EANAIVWGALLGACRIHRDTQLAELA 315
>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
Length = 886
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T+L SCA LS+L G++I +K+ D+ VGSA +++Y CG
Sbjct: 511 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKV 570
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TWN ++ Y + + AI + + ++ GVK + VTF+++ CSHSG+V
Sbjct: 571 FDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMV 630
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYK-DDLVVWGDLV 140
++IF +M+ D+ V+P L+P D W L+
Sbjct: 631 NEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLL 690
Query: 141 SSCQVHSNVRLAKKAA 156
+C++H+N+ + + AA
Sbjct: 691 GACRIHNNLEIGEIAA 706
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 19/122 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCGVT--- 56
V P F ++VL +C+ L L G+++ +K+G + FVGSA +++YCNC
Sbjct: 294 VEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 353
Query: 57 --------------WNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSH 101
WN MI GYA+NEY E+A+ L+ ++ S G+ + T ++ C
Sbjct: 354 CRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVR 413
Query: 102 SG 103
SG
Sbjct: 414 SG 415
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 18/119 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND-IFVGSAPINIYCNCG----- 54
+ P F F +L + A L + LG+QI + K GYG D + V + +N+Y CG
Sbjct: 89 IKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 148
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I E E A+ ++ ++ V+ T V++ CS+
Sbjct: 149 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPSSFTLVSVALACSN 207
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 1 VYPTQFPFTTVLSSCAKL---SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--- 54
V P+ F +V +C+ L +G+Q+ ++ G N F+ + + +Y G
Sbjct: 191 VEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNS-FIINTLVAMYGKMGKLA 249
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTWN ++ +NE +A+ ++++ GV+ DG T ++L CS
Sbjct: 250 SSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACS 309
Query: 101 HSGLVYAEVEI 111
H ++ E+
Sbjct: 310 HLEMLRTGKEL 320
>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic [Vitis vinifera]
Length = 825
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++L +C + ++ LG+QI ++ ++FVG+A +++Y G
Sbjct: 521 VRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAE 580
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VT+ MI Y ++ E+A+SL+ ++ SG+K D VTFVAIL+ CS++G
Sbjct: 581 NVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAG 640
Query: 104 LVYAEVEIFNSMEHDHEVKP-------------------------KCLMPYKDDLVVWGD 138
LV + IF SME +++++P K L + +WG
Sbjct: 641 LVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGS 700
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C++H L K A
Sbjct: 701 LLGACRIHGEFELGKVVA 718
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVK--------DGYGNDIFVGSAPINI---------- 49
T +LS + L S +G+Q +++ D Y D++ S I
Sbjct: 426 LTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDSYLIDMYAKSGLITTAQQLFEKNSD 485
Query: 50 YCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
Y TWN MI GY +N E+ ++++ +I V+ + VT +IL C+ G +
Sbjct: 486 YDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTI 541
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 30/121 (24%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------------ 53
+ F++ L +CA+ SL LG+ + +++ +G+ V ++ +N+Y C
Sbjct: 105 YTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYD 164
Query: 54 ------------------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95
V WN MI Y + E + +A +++ ++ G++ V+FV +
Sbjct: 165 FNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNV 224
Query: 96 L 96
Sbjct: 225 F 225
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F + L++ ++L L LGRQ+ I+K + + +A I +Y CG
Sbjct: 325 FLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNML 384
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTWN M+ + +N ++ + L + G D VT A+L+ S+
Sbjct: 385 ERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASN 435
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 20/121 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG--YGNDIFVGSAPINIYCNCGVT-- 56
+ PT F V + ++S + +VK G + +D FV S+ I +Y G
Sbjct: 214 IRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDF 273
Query: 57 ---------------WNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCS 100
WN MI GY +N +AI L+ ++ S D VTF++ LT S
Sbjct: 274 AREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAIS 333
Query: 101 H 101
Sbjct: 334 Q 334
>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++VL C+ LS+L LGRQ+ + K D ++ I++YC CG
Sbjct: 291 VRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAW 350
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GYA++ +A+ L+ + +K D +TFVA++ C+H+G
Sbjct: 351 KLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAG 410
Query: 104 LVYAEVEIFNSMEHDH--EVKP---KCL-------------------MPYKDDLVVWGDL 139
V V+ F SM+ + E KP C+ MP+K ++G L
Sbjct: 411 FVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTL 470
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N+ LA+ AA
Sbjct: 471 LGACRIHKNLDLAEFAA 487
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTWN MI GY EN E + ++K +I S V+ + ++ ++L CS+
Sbjct: 261 VTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSN 307
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + V +C++LS+L LG+++ +K DIFV S+ I++Y G
Sbjct: 407 IQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQ 466
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN +I GY + ++A+ L++ ++ G+K D TF IL CSH+G
Sbjct: 467 RIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAG 526
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +E FN M + H ++PK C+ MP D +W L
Sbjct: 527 LVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSL 586
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC++H N+ L +K A
Sbjct: 587 LSSCRIHGNLGLGEKVA 603
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 19/125 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P F V+ +CA L L LG+ I K +D+FVG+A I +Y CG+
Sbjct: 206 PDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKR 265
Query: 56 -----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH-SG 103
+WN ++ GYA+N +A+ LY + SG+ D T ++L CS
Sbjct: 266 VFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKS 325
Query: 104 LVYAE 108
L Y E
Sbjct: 326 LHYGE 330
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F ++L +C+++ SL G +I +++G D F+G + +++Y CG
Sbjct: 308 PDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVL 367
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN MI GY++N ++AI+L++ +++ G++ + + + CS
Sbjct: 368 FDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQ 423
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 19/109 (17%)
Query: 11 VLSSCAKLSSLFLGRQILTRI-VKDGYGNDIFVGSAPINIYCNCG--------------- 54
+L +C + + +GR++ + + ND + + I +Y CG
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 170
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPCS 100
WN ++ Y NE E A+S++ ++I+ + K D T ++ C+
Sbjct: 171 NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA 219
>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
Length = 606
Score = 94.0 bits (232), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCGV------ 55
P + VL C +L L +G+ I V+ Y + + +A I++Y CGV
Sbjct: 319 PMENTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNEISVILANALIDMYAKCGVIHEAAK 378
Query: 56 -----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+WN MI YA + + +QA+S+++ +I+ G K D +T V +L+ CSH GL
Sbjct: 379 VFNDMPERNLVSWNSMITAYASHGHAKQALSVFERMISGGFKPDDITLVGVLSACSHGGL 438
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V E F +M+ + ++PK C+ MP + WG LV
Sbjct: 439 VAEGQEYFQNMKRKYGIEPKNEHYACMIDLLGRVGLLEDAYELITKMPMEPSAAAWGALV 498
Query: 141 SSCQVHSNVRLAKKAA 156
+C++H NV +AK AA
Sbjct: 499 HACRMHGNVEVAKIAA 514
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 18/114 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F L +C + + G+ + + K G+ + V + ++ Y G
Sbjct: 153 FVFALKACEQFLGVLEGKSVHCVVWKMGFVYTLLVQNGLVHFYGLRGCLGLARLVFDEIS 212
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSG 103
V+W MI GY+++++ ++A+ L+ ++ G V+ + VT +A+L+ CS G
Sbjct: 213 ERDVVSWTSMIDGYSKHKWCDEALKLFDSMLMYGVVEPNEVTMIAVLSSCSQKG 266
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + V +C++LS+L LG+++ +K DIFV S+ I++Y G
Sbjct: 505 IQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQ 564
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN +I GY + ++A+ L++ ++ G+K D TF IL CSH+G
Sbjct: 565 RIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAG 624
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +E FN M + H ++PK C+ MP D +W L
Sbjct: 625 LVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSL 684
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC++H N+ L +K A
Sbjct: 685 LSSCRIHGNLGLGEKVA 701
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 60/116 (51%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F ++L +C+++ SL G +I +++G D F+G + +++Y CG
Sbjct: 406 PDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVL 465
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN MI GY++N ++AI+L++ +++ G++ + + + CS
Sbjct: 466 FDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQ 521
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 19/117 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F V+ +CA L L LG+ I K +D+FVG+A I +Y CG
Sbjct: 99 PDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKV 158
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH--DGVTFVAILTPCS 100
V+WN +I G++EN +++++ + +++++ D T V +L C+
Sbjct: 159 FEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCA 215
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 18/122 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV--------- 55
+F VL C + S L +++ + G ++ V +A I Y CG
Sbjct: 307 EFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFD 366
Query: 56 --------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH-SGLVY 106
+WN ++ GYA+N +A+ LY + SG+ D T ++L CS L Y
Sbjct: 367 LMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHY 426
Query: 107 AE 108
E
Sbjct: 427 GE 428
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 19/109 (17%)
Query: 11 VLSSCAKLSSLFLGRQILTRI-VKDGYGNDIFVGSAPINIYCNCG--------------- 54
+L +C + + +GR++ + + ND + + I +Y CG
Sbjct: 4 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPCS 100
WN ++ Y NE E A+S++ ++I+ + K D T ++ C+
Sbjct: 64 NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACA 112
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 19/116 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TVL CA + G + VK G ++ V ++ I++Y C
Sbjct: 202 PDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLL 261
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIA--SGVKHDGVTFVAILTPC 99
V+WN MI GYA E V + L + + + +K D T + +L C
Sbjct: 262 FDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVC 317
>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
Length = 825
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++L +C + ++ LG+QI ++ ++FVG+A +++Y G
Sbjct: 521 VRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAE 580
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VT+ MI Y ++ E+A+SL+ ++ SG+K D VTFVAIL+ CS++G
Sbjct: 581 NVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAG 640
Query: 104 LVYAEVEIFNSMEHDHEVKP-------------------------KCLMPYKDDLVVWGD 138
LV + IF SME +++++P K L + +WG
Sbjct: 641 LVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGS 700
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C++H L K A
Sbjct: 701 LLGACRIHGEFELGKVVA 718
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVK--------DGYGNDIFVGSAPI----------NI 49
T +LS + L S +G+Q +++ DGY D++ S I +
Sbjct: 426 LTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDGYLIDMYAKSGLITTAQQLFEKNSX 485
Query: 50 YCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
Y TWN MI GY +N E+ ++++ +I V+ + VT +IL C+ G +
Sbjct: 486 YDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTI 541
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F + L++ ++L L LGRQ+ I+K + + +A I +Y CG
Sbjct: 325 FLSALTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNML 384
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTWN M+ + +N ++ + L ++ G D VT A+L+ S+
Sbjct: 385 ERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASN 435
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 30/121 (24%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------------ 53
+ F++ L +CA+ SL LG+ + +++ +G+ V ++ +N+Y C
Sbjct: 105 YTFSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYD 164
Query: 54 ------------------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95
V WN MI Y + E + +A +++ ++ G++ V+FV +
Sbjct: 165 FNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNV 224
Query: 96 L 96
Sbjct: 225 F 225
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 20/121 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG--YGNDIFVGSAPINIYCNCGVT-- 56
+ PT F V + +++ + +VK G Y +D FV S+ I +Y G
Sbjct: 214 IRPTPVSFVNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDF 273
Query: 57 ---------------WNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCS 100
WN MI GY +N +AI L+ ++ S D VTF++ LT S
Sbjct: 274 AREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAIS 333
Query: 101 H 101
Sbjct: 334 Q 334
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P F VLS+C++L +L +G+ + GY ++FVG+ I++Y CGV
Sbjct: 301 VIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAV 360
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN +I+G A + + A+ ++ + + G + DGVTFV IL+ C+H G
Sbjct: 361 VVFNCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMG 420
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F SM + + P+ C+ MP + D V+W L
Sbjct: 421 LVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAAL 480
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C+++ NV +A+ A
Sbjct: 481 LGACRLYKNVEIAELA 496
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F +VL++CA L SL +G I T I K+ ND+ VG+A I++Y CG
Sbjct: 366 PDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKV 425
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TW M+ G A N ++AI ++ + ++ D +T++ +L+ C+HSG+V
Sbjct: 426 FHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMV 485
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F M DH ++P C+ MP + +VWG L+
Sbjct: 486 DQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLG 545
Query: 142 SCQVHSNVRLAKKAA 156
+ ++H++ +A+ AA
Sbjct: 546 ASRLHNDEPMAELAA 560
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAK-LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV---- 55
V P F +L+ + +L G+++ +VK G G++++V +A + +Y CG+
Sbjct: 130 VTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMA 189
Query: 56 -------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+WN MI GY + E++I L ++ + V VT + +L+ CS
Sbjct: 190 RGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI GY +++ +++++ ++G+ D T V++LT C+H G
Sbjct: 334 ISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLG 382
>gi|242041437|ref|XP_002468113.1| hypothetical protein SORBIDRAFT_01g039790 [Sorghum bicolor]
gi|241921967|gb|EER95111.1| hypothetical protein SORBIDRAFT_01g039790 [Sorghum bicolor]
Length = 459
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++L + A ++ + G+++ T V G ++ VGSA +++Y G
Sbjct: 208 VLPCSATIVSILPAFANVADVKRGKEVHTYAVVTGVEQELTVGSALLDMYTKSGFLLEAR 267
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI G A + + ++AI L+ ++ G + D +TF A+LT CS++G
Sbjct: 268 RLFDRMAERSTVTWNSMIFGLANSGHCQEAIGLFNRMLCDGARPDHLTFTAVLTACSYAG 327
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V ++ M+ +H ++P+ C+ MP + D VWG L
Sbjct: 328 MVELGKSLYRDMQEEHGIEPRLEHCACMVHLLGRAGWLAEAYDFIKAMPLEPDCFVWGAL 387
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ H +++LA+ AA
Sbjct: 388 LGACRSHGDIKLAELAA 404
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 31/161 (19%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG--YGNDIFVGSAPINIYCNCG---- 54
++P P T L +CA+L + GR I ++ D +A +++Y CG
Sbjct: 34 LHPAAVP--TALRACARLGNASSGRLIHALVITRFPFLAADAVAATALLDMYAKCGLVAS 91
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN ++ YA + ++A++L + ++ D +T+ A+++ +
Sbjct: 92 AQRVFDEMPRKDDLVAWNALVACYARHALPDRALALAIKMRGQCLRPDLMTWNAVISGFA 151
Query: 101 HSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
+G E+ +ME D ++ D+V W LVS
Sbjct: 152 LAGDDQMAGELVGAMEED---------GFQPDVVTWTSLVS 183
>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
Length = 562
Score = 93.6 bits (231), Expect = 2e-17, Method: Composition-based stats.
Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT +VL++CA +L +G+QI +R+ G+ + + +A +++Y CG
Sbjct: 188 PTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKV 247
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI A++ ++A+ L+K++ G+ D TF+ +L CSH+GL+
Sbjct: 248 FTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLI 307
Query: 106 YAEVEIFNSMEHDHEVKPK----CL--------------------MPYKDDLVVWGDLVS 141
+E F+SM D+ + P C MP+ + + W L++
Sbjct: 308 KESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLN 367
Query: 142 SCQVHSNVRLAKKAA 156
+C++HS A K A
Sbjct: 368 ACRIHSQAERATKVA 382
Score = 45.1 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 19/135 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG--YGNDIFVGSAPINIYCNCG---- 54
V P FT V ++C + L GR+I + G ++ + +A +N+Y CG
Sbjct: 83 VEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEE 142
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+W MI EN + +A+ L+ + G+ VT ++L C+
Sbjct: 143 ARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACAC 202
Query: 102 SGLVYAEVEIFNSME 116
SG + +I + ++
Sbjct: 203 SGALKVGKQIHSRLD 217
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F +VL++CA L SL +G I T I K+ ND+ VG+A I++Y CG
Sbjct: 366 PDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKV 425
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TW M+ G A N ++AI ++ + ++ D +T++ +L+ C+HSG+V
Sbjct: 426 FHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMV 485
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F M DH ++P C+ MP + +VWG L+
Sbjct: 486 DQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLG 545
Query: 142 SCQVHSNVRLAKKAA 156
+ ++H++ +A+ AA
Sbjct: 546 ASRLHNDEPMAELAA 560
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLS-SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV---- 55
V P F +L+ + +L G+++ +VK G G++++V +A + +Y CG+
Sbjct: 130 VTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMA 189
Query: 56 -------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+WN MI GY + E++I L ++ + V VT + +L+ CS
Sbjct: 190 RGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI GY +++ +++++ ++G+ D T V++LT C+H G
Sbjct: 334 ISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLG 382
>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
Length = 690
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 95/189 (50%), Gaps = 42/189 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++L++CA+ L LG++I + + G V +A ++++C CG
Sbjct: 403 SILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFCKCGCVNRADYIFDTEIVE 462
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I G+A + + E+A++L+ + G D VT + +L+ C+H GLV
Sbjct: 463 KDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRF 522
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F +ME D+ +KP+ C+ MP++ + V+WG L+S+C++H
Sbjct: 523 FANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPWEPNEVIWGSLLSACRLHK 582
Query: 148 NVRLAKKAA 156
NV A+ AA
Sbjct: 583 NVEYAELAA 591
>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
Length = 549
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F++++ C L+SL G+Q+ +++ G+ +++F+ S+ I++YC CG
Sbjct: 268 VRPVPVTFSSLIPVCGNLASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAH 327
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GYA + +A+ L++ + K + +TF+A+LT CSH+G
Sbjct: 328 HIFDRMCSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAG 387
Query: 104 LVYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDL 139
LV + F SM + + P M K VW L
Sbjct: 388 LVDKGWKYFKSMSDHYGIVPTLEHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTL 447
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH N LA++ A
Sbjct: 448 LRACRVHKNTMLAEEVA 464
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 17/114 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT------ 56
P F ++VL A+ + + G ++ V++G+ ND+FVGS+ I++Y NC T
Sbjct: 169 PDSFTLSSVLPIFAECADVKRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSVKV 228
Query: 57 -----------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
WN ++ G A+N VE+A+ +++ ++ +GV+ VTF +++ C
Sbjct: 229 FDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVC 282
>gi|242093006|ref|XP_002436993.1| hypothetical protein SORBIDRAFT_10g014210 [Sorghum bicolor]
gi|241915216|gb|EER88360.1| hypothetical protein SORBIDRAFT_10g014210 [Sorghum bicolor]
Length = 698
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 94/192 (48%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F T+VL +C++ S+L +G QI +R VK G +D V +A + +Y NCG
Sbjct: 438 FCMTSVLRACSRTSNLAIGLQIHSRTVKLGIDDDNSVENALVTLYANCGSVQVALKIFNS 497
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
VTWN ++ ++++ AI L+ + V D TFV +L+ CS GLV
Sbjct: 498 MSNRDIVTWNALLTSFSQHGNEVAAIQLFDLMQEEEVCPDDYTFVGLLSSCSRMGLVKEG 557
Query: 109 VEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQ 144
E FN M+ + ++PK C+ MPY+ D ++W L++SC+
Sbjct: 558 CEYFNEMKAKYNLEPKMVHYTCMVDLFARAGRFCDAMDFIDAMPYEPDQILWEALLASCK 617
Query: 145 VHSNVRLAKKAA 156
+H N+ L + AA
Sbjct: 618 IHGNLGLGRIAA 629
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 16/127 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+PT F+ +L L +G QI ++K G D +GSA + +Y CG
Sbjct: 232 VWPTNVTFSCILKVFNTPDLLSVGMQIHGCLLKIGTEVDTALGSALMTMYGRCGGVDEIA 291
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+ ++ YA N Y +AI ++K++I + + D +L CS G
Sbjct: 292 RLACRIRHDVFSRTSLLGAYARNGYNAEAIGVFKEMILTNMAIDQSAMTCLLQVCSSVGQ 351
Query: 105 VYAEVEI 111
+ E+
Sbjct: 352 LRMVREV 358
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/183 (18%), Positives = 73/183 (39%), Gaps = 39/183 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q T +L C+ + L + R++ +K + D + +A I +Y CG
Sbjct: 336 QSAMTCLLQVCSSVGQLRMVREVHCYALKTFFKLDTLLLNAIITVYGRCGDTTSAETVFN 395
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
++W ++ YA+N E+ + +++++ G+ ++L CS + +
Sbjct: 396 LMEEQDIISWTALLTCYAQNGLDEEVLLFFREMLRRGLGSPVFCMTSVLRACSRTSNLAI 455
Query: 108 EVEIFN-----SMEHDHEVKPKCLMPYKD-----------------DLVVWGDLVSSCQV 145
++I + ++ D+ V+ + Y + D+V W L++S
Sbjct: 456 GLQIHSRTVKLGIDDDNSVENALVTLYANCGSVQVALKIFNSMSNRDIVTWNALLTSFSQ 515
Query: 146 HSN 148
H N
Sbjct: 516 HGN 518
Score = 35.4 bits (80), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 20/114 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F +++ C++ + G Q+ + K G D V +A +++Y CG
Sbjct: 130 PDSFMLGALVAGCSRARHVDAGVQVHACVAKFGVDEDESVAAALVDMYAKCGWVDSSWRA 189
Query: 55 ---------VTWNEMIH---GYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
++W MI + Y + A+ L+K ++A V VTF IL
Sbjct: 190 FTLAPQRSVLSWTSMIACLVNQGSSGYHDAAMLLFKKMLALKVWPTNVTFSCIL 243
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + TV+ +CAKL ++ + I I GY D+ +G+A I++Y CG
Sbjct: 248 IVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESAR 307
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TW+ MI Y + E+A+ L+ ++ SG+ + +TFV++L CSH+G
Sbjct: 308 WIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAG 367
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ F+SM ++ V P C+ MP + D V+WG L
Sbjct: 368 LIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGAL 427
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H ++ LA++ A
Sbjct: 428 LGACRIHRHLDLAERVA 444
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F + LS+ A L+ + G+QI R++K G+ + VG+A I++Y CG
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN +I +++ +A+ L+ + G+K + VTF+ +L CSH GLV
Sbjct: 608 MSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEG 667
Query: 109 VEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQ 144
+ F SM ++ ++P+ C+ MP D +VW L+S+C+
Sbjct: 668 LSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACK 727
Query: 145 VHSNVRLAKKAA 156
VH N+ + + AA
Sbjct: 728 VHKNIEVGEFAA 739
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT + ++VLSSC K GR I + K G+ ++IFVG+A I +Y CG
Sbjct: 139 VVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAE 198
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VT+N +I G+A+ + E A+ +++++ SG+ D VT ++L C+ G
Sbjct: 199 RVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
++P + +S CA ++++ G QI RI GY D+ + +A +N+Y C
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
G+T N ++ G+A++ E+A+ ++ + SGVKH+ TFV+ L+ ++
Sbjct: 502 SSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASAN 559
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 28/159 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P QF + +L +C + LG QI + VK G+ +D++V I++Y G
Sbjct: 341 IRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY ++E + A++ +K++ G+ D + + ++ C+
Sbjct: 401 RVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAG-- 458
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMP-YKDDLVVWGDLVS 141
N+M ++ + + Y D+ +W LV+
Sbjct: 459 --------INAMRQGLQIHARIYVSGYSGDVSIWNALVN 489
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +++L++CA L L G Q+ + + K G +D + + +++Y CG
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN M+ + + + ++ L+ + A+G++ + T+ IL C+
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCT 356
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 18/111 (16%)
Query: 26 QILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENE 68
+I + V G G VG+ I++Y G V+W M+ GYA+N
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 69 YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDH 119
E+A+ LY+ + +GV ++L+ C+ + L +A+ + ++ + H
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAEL-FAQGRLIHAQGYKH 172
>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
Length = 667
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 45/201 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCG----- 54
+ P F F +L +CA ++ GR ++K G G D+ VGSA +++Y CG
Sbjct: 341 IEPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDA 400
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDII---ASGVKHDGVTFVAILTPC 99
+WN +I GYA+N +A+ LY +++ SG+ + VTFV +L C
Sbjct: 401 LRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCAC 460
Query: 100 SHSGLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVV 135
SH+GL+ F M H +KP C+ +P K D V+
Sbjct: 461 SHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQEAEALILALPIKPDNVM 520
Query: 136 WGDLVSSCQVHSNVRLAKKAA 156
WG L+ +C++H +V++ ++ A
Sbjct: 521 WGALLGACKLHGDVQMTRRTA 541
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 24/132 (18%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
++ + VL+ A +F Q+ + I++ G+ +D F +A +N+Y CG
Sbjct: 244 EYTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFE 303
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+W +I G+ ++ ++E+A+ L+ + ++ + TF +L C A
Sbjct: 304 EIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGAC-------A 356
Query: 108 EVEIFNSMEHDH 119
+ F H H
Sbjct: 357 DANAFQKGRHFH 368
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 27/133 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + ++ C L G+Q+ IVK D F+G+ + +Y G
Sbjct: 143 VRPDNFTYAIIIPCC----DLGFGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDAR 198
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI Y++ +++I L++ + G+ D T+ +L +
Sbjct: 199 KVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLNEFA--- 255
Query: 104 LVYAEVEIFNSME 116
A ++F +M+
Sbjct: 256 ---ARWQVFEAMQ 265
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F + LS+ A L+ + G+QI R++K G+ + VG+A I++Y CG
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN +I +++ +A+ L+ + G+K + VTF+ +L CSH GLV
Sbjct: 608 MSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEG 667
Query: 109 VEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQ 144
+ F SM ++ ++P+ C+ MP D +VW L+S+C+
Sbjct: 668 LSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACK 727
Query: 145 VHSNVRLAKKAA 156
VH N+ + + AA
Sbjct: 728 VHKNIEVGEFAA 739
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P + +S CA ++++ G QI RI GY D+ + +A +N+Y CG
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+TWN ++ G+A++ E+A+ ++ + SGVKH+ TFV+ L+ ++
Sbjct: 502 SSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASAN 559
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT + ++VLSSC K GR I + K G+ ++IFVG+A I +Y CG
Sbjct: 139 VVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAE 198
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VT+N +I G+A+ + E A+ +++++ SG+ D VT ++L C+ G
Sbjct: 199 RVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 28/159 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P QF + +L +C + LG QI + VK G+ +D++V I++Y G
Sbjct: 341 IRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY ++E + A++ +K++ G+ D + + ++ C+
Sbjct: 401 RVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAG-- 458
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMP-YKDDLVVWGDLVS 141
N+M ++ + + Y D+ +W LV+
Sbjct: 459 --------INAMRQGLQIHARIYVSGYSGDVSIWNALVN 489
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +++L++CA L L G Q+ + + K G +D + + +++Y CG
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN M+ + + + ++ L+ + A+G++ + T+ IL C+
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCT 356
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 18/111 (16%)
Query: 26 QILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENE 68
+I + V G G VG+ I++Y G V+W M+ GYA+N
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 69 YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDH 119
E+A+ LY+ + +GV ++L+ C+ + L +A+ + ++ + H
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAEL-FAQGRLIHAQGYKH 172
>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 43/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P F F L++C+ L +L GRQ+ ++V GY + + VG+A I++Y CGV
Sbjct: 423 PCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESV 482
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN MI ++ + +AI L+ ++ GV D +TF+ +LT CSH+GLV
Sbjct: 483 FVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLV 542
Query: 106 YAEVEIFNSMEHDHEVKPKC-------------------------LMPYKDDLVVWGDLV 140
FNSM + + P C MP K VW L+
Sbjct: 543 EKGRHYFNSMLESYGITP-CEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALL 601
Query: 141 SSCQVHSNVRLAKKAA 156
+ C++H N+ L +AA
Sbjct: 602 AGCRIHGNMDLGIEAA 617
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 30/166 (18%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGND----IFVGSAPINIYCNCG--------- 54
+TT++S+CA + S +G+Q+ I+K+ + + V +A I +YC
Sbjct: 292 YTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIF 351
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
+TWN ++ GY +E+A S ++++ + +T +++ + +G
Sbjct: 352 YAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL----LTLTVMISGLAQNGFGD 407
Query: 107 AEVEIFNSMEHDHEVKPKCLMPYKDDLV---VWGDLVSSCQVHSNV 149
+++F M D +P C + L V G L + Q+H+ +
Sbjct: 408 EGLKLFKQMRLDG-FEP-CDFAFAGALTACSVLGALENGRQLHAQL 451
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 52 NCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
N G WN MI GY ++A++L + + G++ D +T+ I++ C++ G
Sbjct: 252 NLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVG 303
>gi|449509043|ref|XP_004163477.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Cucumis sativus]
Length = 523
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 96/196 (48%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT------ 56
P F++V+ +C+ L++ G+QI +++K + DI +GSA I++Y CG T
Sbjct: 270 PNISTFSSVIGACSVLAAFEAGQQIQCQLMKTKFFTDIRMGSALIDMYSKCGRTDDARQV 329
Query: 57 -----------WNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSHSGL 104
W MI GY +N Y +A+ L+ + ++ + VTF++ L+ C+H GL
Sbjct: 330 FDQMQERNVFSWTSMIDGYGKNGYPSEALELFCIMQEKHQIQPNFVTFLSALSACAHGGL 389
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V EIF SME D+ +KPK C+ MP + VW L+
Sbjct: 390 VEEGWEIFESMERDYSLKPKMEHYACMVDLLGRAGSLLQAWEFVMQMPETPNSDVWAALL 449
Query: 141 SSCQVHSNVRLAKKAA 156
SS ++H NV +A AA
Sbjct: 450 SSAKLHGNVEIACMAA 465
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F + LS+ A L+ + G+QI R++K G+ + VG+A I++Y CG
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN +I +++ +A+ L+ + G+K + VTF+ +L CSH GLV
Sbjct: 608 MSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEG 667
Query: 109 VEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQ 144
+ F SM ++ ++P+ C+ MP D +VW L+S+C+
Sbjct: 668 LSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACK 727
Query: 145 VHSNVRLAKKAA 156
VH N+ + + AA
Sbjct: 728 VHKNIEVGEFAA 739
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P + +S CA ++++ G QI RI GY D+ + +A +N+Y CG
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+TWN ++ G+A++ E+A+ ++ + SGVKH+ TFV+ L+ ++
Sbjct: 502 SSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASAN 559
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT + ++VLSSC K GR I + K G+ ++IFVG+A I +Y CG
Sbjct: 139 VVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAE 198
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VT+N +I G+A+ + E A+ +++++ SG+ D VT ++L C+ G
Sbjct: 199 RVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 28/159 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P QF + +L +C + LG QI + VK G+ +D++V I++Y G
Sbjct: 341 IRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKAR 400
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY ++E + A++ +K++ G+ D + + ++ C+
Sbjct: 401 RVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAG-- 458
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMP-YKDDLVVWGDLVS 141
N+M ++ + + Y D+ +W LV+
Sbjct: 459 --------INAMRQGLQIHARIYVSGYSGDVSIWNALVN 489
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +++L++CA L L G Q+ + + K G +D + + +++Y CG
Sbjct: 242 PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVI 301
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN M+ + + + ++ L+ + A+G++ + T+ IL C+
Sbjct: 302 FNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCT 356
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 18/111 (16%)
Query: 26 QILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENE 68
+I + V G G VG+ I++Y G V+W M+ GYA+N
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122
Query: 69 YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDH 119
E+A+ LY+ + +GV ++L+ C+ + L +A+ + ++ + H
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAEL-FAQGRLIHAQGYKH 172
>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 606
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F FT+V+++CA L+ L+ G+Q+ I+ G N++ + +A I++Y CG
Sbjct: 308 PNCFTFTSVIAACANLAILYCGQQLHGGIIHRGLDNNLELSNALIDMYAKCGNVADSHKI 367
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W M+ GY + + ++A+ L+ +++ SG+K D + F+A+L+ CSH+GLV
Sbjct: 368 FSGMRHTNLVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSHAGLV 427
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F M + V P C+ MP+K D +W L+
Sbjct: 428 DEGLRYFRLMTSYYNVAPDRDIYACVVDLLSRAGRVKEAYELIENMPFKPDESIWVALLG 487
Query: 142 SCQVHSNVRLAKKAA 156
+C+ + + K AA
Sbjct: 488 ACKKYKQPSIQKLAA 502
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 65/129 (50%), Gaps = 18/129 (13%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------------ 53
F F+ +S+CA + S LG+Q+ ++ G+ +++ V +A +++YC C
Sbjct: 211 FSFSIAVSACASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGE 270
Query: 54 -----GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+TWN +I G+ + E ++ ++ +++ G + TF +++ C++ ++Y
Sbjct: 271 MTQKDTITWNTLIAGFETLDSYE-SLCIFSQMVSEGFSPNCFTFTSVIAACANLAILYCG 329
Query: 109 VEIFNSMEH 117
++ + H
Sbjct: 330 QQLHGGIIH 338
>gi|224125246|ref|XP_002319538.1| predicted protein [Populus trichocarpa]
gi|222857914|gb|EEE95461.1| predicted protein [Populus trichocarpa]
Length = 577
Score = 93.6 bits (231), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 41/189 (21%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
+ VL +SL LG+QI + ++K +G++ FVG+ IN+Y CG
Sbjct: 265 SAVLGVFGADTSLGLGQQIHSLVIKRSFGSNPFVGNGLINMYSKCGDLEDSTKVFSRMPC 324
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN MI +A + +A+ LYK++ GV+ VTF+++L CSH GLV +E
Sbjct: 325 MNSVSWNSMIAAFARHGDGSRALQLYKEMRLKGVEPTDVTFLSLLHACSHVGLVEKGMEF 384
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
SM H++ P+ C+ +P K D++VW L+ +C +H
Sbjct: 385 LKSMTEVHKLTPRMEHYACVVDMLGRAGLLNEAKTFIEGLPIKPDVLVWQALLGACGIHG 444
Query: 148 NVRLAKKAA 156
+ + K AA
Sbjct: 445 DPEMGKYAA 453
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q TT+LS+C + F+ + + V +G+ +I VG+A I Y CG
Sbjct: 59 QATLTTILSACDRPELGFVNKMVHCLAVLNGFQREISVGNALITSYFKCGFSSSGMQVFD 118
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+TW +I G ++E ++ L+ ++ V+ + +T+++ L CS
Sbjct: 119 EMLERNVITWTAIISGLVQSELYRDSLRLFVEMTNGLVEPNSLTYLSSLMACS 171
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + + L +C+ L +L G QI R+ K G +D V SA +++Y CG
Sbjct: 156 VEPNSLTYLSSLMACSGLQALREGCQIHGRVWKLGLQSDFCVESALMDMYSKCGSMGDTL 215
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V+ ++ G+A+N + E+A+ + ++ +G + D A+L
Sbjct: 216 QIFESAGQLDKVSMTIILAGFAQNGFEEEAMQFFVKMLEAGTEIDSNMVSAVL 268
>gi|449462669|ref|XP_004149063.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
mitochondrial-like [Cucumis sativus]
Length = 523
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 96/196 (48%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT------ 56
P F++V+ +C+ L++ G+QI +++K + DI +GSA I++Y CG T
Sbjct: 270 PNISTFSSVIGACSVLAAFEAGQQIQCQLMKTKFFTDIRMGSALIDMYSKCGRTDDARQV 329
Query: 57 -----------WNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSHSGL 104
W MI GY +N Y +A+ L+ + ++ + VTF++ L+ C+H GL
Sbjct: 330 FDQMQERNVFSWTSMIDGYGKNGYPSEALELFCIMQEKHQIQPNFVTFLSALSACAHGGL 389
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V EIF SME D+ +KPK C+ MP + VW L+
Sbjct: 390 VEEGWEIFESMERDYSLKPKMEHYACMVDLLGRAGSLLQAWEFAMQMPETPNSDVWAALL 449
Query: 141 SSCQVHSNVRLAKKAA 156
SS ++H NV +A AA
Sbjct: 450 SSAKLHGNVEIACMAA 465
>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
Length = 516
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 97/192 (50%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F TV+ A+L++L LGRQ+ + G+ + + VG+A +++Y C
Sbjct: 145 FVLATVVGGAAELAALVLGRQLHGFAITLGFLSSMIVGNALVDMYSKCSDIHSAREVFGG 204
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+W ++ G A++ VE+ ++LY ++ +G+K + VTFV ++ CSH+GLV
Sbjct: 205 IIVRDVVSWTTILVGEAQHGRVEEVLALYDRMLLAGMKPNEVTFVGLIYACSHAGLVQKG 264
Query: 109 VEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVSSCQ 144
++F+SM+ ++ +KP MPY+ D WG L+S+C+
Sbjct: 265 RQLFDSMKREYGIKPGLQHYTCYLDLLSRSGYLSEAEELITTMPYEPDEASWGALLSACK 324
Query: 145 VHSNVRLAKKAA 156
H++ ++ + A
Sbjct: 325 KHNDTQMCLRVA 336
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 21/112 (18%)
Query: 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNC-----------------GVTWNEMIHGYAE 66
GRQ+ V Y D V S+ I++YC C GV W ++ GYA
Sbjct: 30 GRQLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYAS 89
Query: 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118
N +AI L++ + G+ + A+++ +G V +F M D
Sbjct: 90 NGCTGEAIDLFRSMPERGL----FAWTALISGFVKAGNNTGAVGLFVEMRRD 137
>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Vitis vinifera]
Length = 633
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F T+L +CA L+++ G+++ + ++ G D+ V SA +++Y CG
Sbjct: 363 FGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMP 422
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+TWN MI G+A+N E+A+ ++ ++ G+K D ++F+ IL CSH GLV E
Sbjct: 423 VRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGRE 482
Query: 111 IFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQVH 146
F SM D+ +K C++ ++DD +W L+ +C
Sbjct: 483 YFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTC 542
Query: 147 SNVRLAKKAA 156
+N +A++ A
Sbjct: 543 TNYEIAERIA 552
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F TVL++C L L G+++ +++ G+ ++ V S+ +++Y CG
Sbjct: 261 PDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRI 320
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ ++ GY +N + I +++ + K D F IL C+ V
Sbjct: 321 FDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKM----EKVDLYCFGTILRTCAGLAAV 376
Query: 106 YAEVEI 111
E+
Sbjct: 377 RQGKEV 382
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ ++L +C K+ + G QI ++K G D FVG++ + +Y G
Sbjct: 62 YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGL 121
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI GY ++ L+ ++A GV+ + T A++ CS G
Sbjct: 122 FVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELG 175
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 18/129 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC-NC------ 53
V P F + V+ +C++L L LGR ++ G+ ++ + SA I+++ NC
Sbjct: 157 VEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDAR 216
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSHS 102
+ W +I N++ ++A+ + + G+ DG TF +LT C +
Sbjct: 217 QLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNL 276
Query: 103 GLVYAEVEI 111
G + E+
Sbjct: 277 GRLKQGKEV 285
>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
Length = 1866
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +++VL SCA L++L+ G I +I++ G+ ++ V S+ I +Y CG
Sbjct: 331 PDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQI 390
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V W +I ++ + + L++ ++ G+K D +TFV++L+ CSH+G V
Sbjct: 391 FEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRV 450
Query: 106 YAEVEIFNSMEHDHEVKP-----KC-------------------LMPYKDDLVVWGDLVS 141
FNSM H + P C LMP K D VWG L+S
Sbjct: 451 EEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLS 510
Query: 142 SCQVHSNVRLAKKAA 156
+C+ HSN+ + K+ A
Sbjct: 511 ACRNHSNLIMGKEVA 525
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 18/121 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
VYP + F+ VLS+C ++ G Q+ + + K G+ ++FV SA +++Y C
Sbjct: 126 VYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAE 185
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH-DGVTFVAILTPCSHS 102
V+WN MI G+ +N+ +QAI +K ++ + D V+F ++ + C+++
Sbjct: 186 KVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANA 245
Query: 103 G 103
G
Sbjct: 246 G 246
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+ F++V S+CA +L G+Q+ +K G N +++ ++ ++Y CG
Sbjct: 232 EVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFS 291
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
VTWN MI Y N E A + + + G D ++ ++L C++ +Y
Sbjct: 292 NTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQ 351
Query: 108 EVEIFNSM 115
I N +
Sbjct: 352 GTLIHNQI 359
>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P F F L++C+ L +L GRQ+ ++V GY + + VG+A I++Y CGV
Sbjct: 423 PCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESV 482
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN MI ++ + +AI L+ ++ GV D +TF+ +LT CSH+GLV
Sbjct: 483 FVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLV 542
Query: 106 YAEVEIFNSMEHDHEVKP-----------KCL-------------MPYKDDLVVWGDLVS 141
FNSM + + P C MP K VW L++
Sbjct: 543 EKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLA 602
Query: 142 SCQVHSNVRLAKKAA 156
C++H N+ L +AA
Sbjct: 603 GCRIHGNMDLGIEAA 617
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 25/132 (18%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGND----IFVGSAPINIYCNCG--------- 54
+TT++S+CA + S +G+Q+ I+K+ + + V +A I +YC
Sbjct: 292 YTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIF 351
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
+TWN ++ GY +E+A S ++++ + +T +++ + +G
Sbjct: 352 YAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNL----LTLTVMISGLAQNGFGD 407
Query: 107 AEVEIFNSMEHD 118
+++F M D
Sbjct: 408 EGLKLFKQMRLD 419
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 52 NCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
N G WN MI GY ++A++L + + G++ D +T+ I++ C++ G
Sbjct: 252 NLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVG 303
>gi|297798028|ref|XP_002866898.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312734|gb|EFH43157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 742
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 94/198 (47%), Gaps = 46/198 (23%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ T+L +CA SL G+ I I++ + ++ + +A I++Y CG
Sbjct: 498 PSSITLVTLLMACANTGSLERGQMIHRYIIETEHEMNLSLSTALIDMYAKCGHLEKSREL 557
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI GY + +VE AI+L+ + S VK G TF+A+L+ C+H+GLV
Sbjct: 558 FDAASQKDAVCWNVMISGYGMHGHVESAIALFDQMEESDVKPTGPTFLALLSACTHAGLV 617
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+F M H ++VKP CL MP+ D V+WG L+S
Sbjct: 618 EHGKNLFLKM-HQYDVKPNLKHYSCLVDLLSRSGNLQEAETTVMSMPFSPDGVIWGTLLS 676
Query: 142 SCQVHS----NVRLAKKA 155
SC H +R+A +A
Sbjct: 677 SCMTHGEFEMGIRMADRA 694
>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
Length = 667
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + TVLS+CA++ SL +G +I I+ +G G+D+ V ++ I+++C CG
Sbjct: 325 PNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLIHMFCKCGSIKKAQAL 384
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSHSGL 104
W+ MI+GYA + ++A++L+ + G+K D + + ++L CSHSGL
Sbjct: 385 FERIPNKDLAVWSAMINGYAVHGMGKEALNLFHKMQNEVGIKPDAIVYTSVLLACSHSGL 444
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLV 140
+ ++ F SM+ D ++P CL MP VW +
Sbjct: 445 IEDGLKYFRSMQKDFGIEPSIQHYSCLVDLLGRAGYVELALRTIQEMPVLVQARVWAPFL 504
Query: 141 SSCQVHSNVRLAKKAA 156
S+C H N+ L + AA
Sbjct: 505 SACYTHHNLELGEFAA 520
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+ ++F F VL +CAKL SL ++ + I+ G+ +FV +A +++Y C
Sbjct: 24 VHGSEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHSAR 83
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I + + +++Q+ + K + G++ TF L CS
Sbjct: 84 LVFDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASCS 140
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 41/186 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F ++S C +L L + + ++K G+ + + + + +Y C
Sbjct: 222 VGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSGFDHKDPIDNLLVAMYAKCKDLVSAR 281
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
W MI GYA+ Y +A+ L+ ++ + + + +T +L+ C+ G
Sbjct: 282 RVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLFNMLLRTASRPNELTLATVLSACAEMG 341
Query: 104 LVYAEVEI-----FNSMEHDHEVKP-------KC-----------LMPYKDDLVVWGDLV 140
+ EI N + D V+ KC +P K DL VW ++
Sbjct: 342 SLRMGEEIEQYILLNGLGSDLRVQTSLIHMFCKCGSIKKAQALFERIPNK-DLAVWSAMI 400
Query: 141 SSCQVH 146
+ VH
Sbjct: 401 NGYAVH 406
>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
Length = 708
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F T+L +CA L+++ G+++ + ++ G D+ V SA +++Y CG
Sbjct: 422 FGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMP 481
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+TWN MI G+A+N E+A+ ++ ++ G+K D ++F+ IL CSH GLV E
Sbjct: 482 VRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGRE 541
Query: 111 IFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQVH 146
F SM D+ +K C++ ++DD +W L+ +C
Sbjct: 542 YFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAALLGACTTC 601
Query: 147 SNVRLAKKAA 156
+N +A++ A
Sbjct: 602 TNYEIAERIA 611
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F TVL++C L L G+++ +++ G+ ++ V S+ +++Y CG
Sbjct: 320 PDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRI 379
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ ++ GY +N + I +++ + K D F IL C+ V
Sbjct: 380 FDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKM----EKVDLYCFGTILRTCAGLAAV 435
Query: 106 YAEVEI 111
E+
Sbjct: 436 RQGKEV 441
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ ++L +C K+ + G QI ++K G D FVG++ + +Y G
Sbjct: 121 YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGL 180
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI GY ++ L+ ++A GV+ + T A++ CS G
Sbjct: 181 FVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELG 234
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 18/129 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC-NC------ 53
V P F + V+ +C++L L LGR ++ G+ ++ + SA I+++ NC
Sbjct: 216 VEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDAR 275
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSHS 102
+ W +I N++ ++A+ + + G+ DG TF +LT C +
Sbjct: 276 QLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNL 335
Query: 103 GLVYAEVEI 111
G + E+
Sbjct: 336 GRLKQGKEV 344
>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
Length = 691
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
TQ +++VL +CA +S+ QI I K + ND +G++ I+ Y CG
Sbjct: 464 TQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVF 523
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++WN +I GYA + A+ L+ + S V+ + +TFVA+L+ CS +GLV
Sbjct: 524 QHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVN 583
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+ +F+SM DH +KP C+ +P +VW L+SS
Sbjct: 584 HGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSS 643
Query: 143 CQVHSNVRLAKKAA 156
C +H NV L + +A
Sbjct: 644 CIIHKNVALGRFSA 657
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 70/133 (52%), Gaps = 23/133 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ ++VL +C + L G+QI +K G+ +D+FVG+A ++ Y C
Sbjct: 360 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSL 419
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS--- 100
V+WN ++ G++++ E+A+S++ ++ A+ + VT+ ++L C+
Sbjct: 420 KIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTA 479
Query: 101 ---HSGLVYAEVE 110
H+G ++ +E
Sbjct: 480 SIRHAGQIHCSIE 492
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 36/179 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F T+VL + L S+ LG+ I +K + VG A +++Y CG
Sbjct: 261 PNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLA 320
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ + MI YA++ EQA L+ ++ S V + + ++L C++ +V
Sbjct: 321 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTN--MV 378
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVW----------GDLVSSCQVHSNVRLAKK 154
+ F H+H +K + ++ DL V D+ SS ++ S++R A +
Sbjct: 379 QLD---FGKQIHNHAIK----IGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANE 430
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC---------- 53
QF TT+L + + L + + K G+ ++ FVGS I+ Y C
Sbjct: 161 NQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVF 220
Query: 54 -------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V W M+ Y+EN+ E A ++ + SG K + ++L
Sbjct: 221 NGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVL 270
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + ++L CAK SL +G+ I + I K G D+ + ++ +++Y NCG
Sbjct: 425 IRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAH 484
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN MI G+A + + E A+ L++++ A GV + +TF+ L CSHSG
Sbjct: 485 RLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSG 544
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ +F+ M H+ PK C+ MP + ++ V+G
Sbjct: 545 LLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSF 604
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C++H N++L + AA
Sbjct: 605 LAACKLHKNIKLGEWAA 621
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P + +++ C +L LG+ + +++G+ + + +A I++Y CG
Sbjct: 324 MFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSAR 383
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ W+ MI YA+N +++A ++ + G++ + T V++L C+ +G
Sbjct: 384 SVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAG 443
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
F +VL +C + S LG+++ +VK+G+ D+FV +A I +Y G
Sbjct: 124 NFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFD 183
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95
V+W+ MI Y + +++A+ L +D+ VK + ++I
Sbjct: 184 KIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISI 231
>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 823
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 91/194 (46%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
TQ F++VL +CA SS+ QI + I K + ND V ++ I+ Y CG
Sbjct: 450 TQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVF 509
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V+WN +I YA + A+ L+ + S +K + VTFV++L+ C +GLV
Sbjct: 510 ESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVN 569
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+ +FNSM DH +KP C+ +P +VW L+SS
Sbjct: 570 QGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSS 629
Query: 143 CQVHSNVRLAKKAA 156
C VH NV L + AA
Sbjct: 630 CVVHKNVALGRYAA 643
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 73/133 (54%), Gaps = 17/133 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F + VL +CA ++ L LG QI +K GY +++FVG+A +++Y C
Sbjct: 346 VVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSL 405
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I GY ++ + E A+S++ ++ A+ + VTF ++L C+++
Sbjct: 406 EIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTS 465
Query: 104 LVYAEVEIFNSME 116
+ V+I + +E
Sbjct: 466 SIKHAVQIHSLIE 478
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 17/128 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F T+ L + LSS LG+ I VK Y + VG A +++Y CG
Sbjct: 247 PNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAI 306
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ W+ +I YA++ EQA ++ ++ S V + + +L C++ +
Sbjct: 307 FEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFL 366
Query: 106 YAEVEIFN 113
+I N
Sbjct: 367 ELGEQIHN 374
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 45/185 (24%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
F TT+L + + L I K G+ + FVG+A I+ Y CG
Sbjct: 147 NHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVF 206
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTP--CSHSGL 104
VTW M+ Y+EN+ E A++ + + +G K + + L C S L
Sbjct: 207 DGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSAL 266
Query: 105 VYAEVE------IFNSMEHDH----EVKPKC-----------LMPYKDDLVVWGDLVS-- 141
+ + ++++ H ++ KC ++P+ DD+++W L+S
Sbjct: 267 LGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPH-DDVILWSFLISRY 325
Query: 142 --SCQ 144
SCQ
Sbjct: 326 AQSCQ 330
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 97/195 (49%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIF-VGSAPINIYCNCG------- 54
P + T+L C++L +L +G++I + G I VG++ I+ YC CG
Sbjct: 237 PDEVTVVTMLPVCSRLGALEVGQRIHSYASSKGNLVGITTVGNSLIDFYCKCGNIEKAYN 296
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+WN +I G+A N E AI L+ ++ +K + TFVA+LT C HSGL
Sbjct: 297 IFQKMTCKSVVSWNTIILGFALNGKGEFAIDLFMEMRKEYLKPNDATFVAVLTACVHSGL 356
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
+ E+F+SM D+E++PK C+ MP + + +WG ++
Sbjct: 357 LEKGRELFSSMAEDYEIQPKLEHFGCMVDLLGRGGCVEEAHKLIKSMPMQPNATLWGAVL 416
Query: 141 SSCQVHSNVRLAKKA 155
+C+ H N++LA+ A
Sbjct: 417 GACRTHGNLKLAEMA 431
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 48/151 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY------------------------ 36
+ P Q+ F +L SCA L LG+ +++ + + G+
Sbjct: 103 IVPDQYTFAPLLKSCANLCEYSLGQCVISEVFRRGFYCFGSIRIGVVELYVCCEKMEDAW 162
Query: 37 -------GNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQ 72
D+ V + I +C G V+WN +I A+N +
Sbjct: 163 KMFDEMSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISCLAQNRRDVE 222
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
A+ L++ + G K D VT V +L CS G
Sbjct: 223 ALELFQQMEEHGFKPDEVTVVTMLPVCSRLG 253
>gi|297796913|ref|XP_002866341.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312176|gb|EFH42600.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+YP TT+L +C L+++ G++I V G + FV SA +++Y CG
Sbjct: 284 LYPNSATITTLLPACTTLANMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAM 343
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VT+N MI YA + ++A+ L+ + A+G K D +TF AILT CSH+G
Sbjct: 344 ILFRKTPKKTTVTFNSMIFCYANHGLSDKAVELFDQMEATGEKLDHLTFTAILTACSHAG 403
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L +F+ M+ + ++P+ C+ M + DL VWG L
Sbjct: 404 LTDLGQNLFHLMQTKYRIEPRLEHYACMVDLLGRAGKLVEAYEMMKTMRMEPDLFVWGAL 463
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ H N+ LA+ AA
Sbjct: 464 LGACRNHGNMELARIAA 480
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 26/153 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F ++L + L G+ I ++K + +D F+ S+ I++Y G
Sbjct: 118 FIVPSLLKASRNLLDREFGKMIHCLVLKCSFESDAFIVSSLIDMYSKFGEVVNARKVFDD 177
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V +N MI GYA N ++A++L KD+ G+K D +T+ A+++ SH G
Sbjct: 178 LGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDIITWNALISGFSHMGNEEKV 237
Query: 109 VEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
EI M CL Y D+V W ++S
Sbjct: 238 SEILELM---------CLDGYMPDVVSWTSIIS 261
>gi|357462223|ref|XP_003601393.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|358344321|ref|XP_003636238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490441|gb|AES71644.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502173|gb|AES83376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 486
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+P + +V+S+CA+L +GR + + ++G+G + + ++ I++Y CG
Sbjct: 237 VWPDEVTVLSVISACAELGDAEMGRMVHKFVEENGFGWMVALCNSLIDMYGKCGCLEEAW 296
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TWN M+ A + Y E A L++ +I SGV DGVT +A+L +H G
Sbjct: 297 QVFDRTKRKSLITWNAMMMVCANHGYAEDAFRLFEGMIGSGVVPDGVTILALLVAYAHKG 356
Query: 104 LVYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDL 139
V + +F SM+ D+ V+P+ MP + V+WG L
Sbjct: 357 FVDEGIRLFESMQRDYGVEPRIEHYGAVVDMLGRSGRLQEAYNLLTSMPIPSNDVIWGAL 416
Query: 140 VSSCQVHSNVRLAKK 154
+ +C++H +V + ++
Sbjct: 417 LGACRIHGDVGMGER 431
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P +VLS+CA + +L G + I K+G D FV +A +++Y CG
Sbjct: 237 VKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKAL 296
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN +I G + + + A+ ++ +++ G K + VTFV +L+ CS +G
Sbjct: 297 EVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAG 356
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ E+FN M H H ++P C+ MP K+ VVW L
Sbjct: 357 LLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESL 416
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ H NV LA++ A
Sbjct: 417 LGACRNHGNVELAERVA 433
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 87/222 (39%), Gaps = 77/222 (34%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ FT L SC S + GRQI ++K G G+D+F+ + I++Y +CG
Sbjct: 104 VLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDAR 163
Query: 55 -------------------------------------------VTWNEMIHGYAENEYVE 71
V+WN MI GY+
Sbjct: 164 HLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFS 223
Query: 72 QAISLYKDIIASGVKHDGVTFVAILTPCSHSG----------------------LVYAEV 109
+ + L++D+ +GVK D T V++L+ C+H G + A V
Sbjct: 224 EVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALV 283
Query: 110 EIFN---SMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSN 148
++++ S+E EV CL + D+ W ++S H +
Sbjct: 284 DMYSKCGSIEKALEVFNSCL---RKDISTWNSIISGLSTHGS 322
>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Brachypodium distachyon]
Length = 750
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +V+SSCA L+SL G Q + G + V +A + +Y CG
Sbjct: 374 IKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAH 433
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W ++ GYA+ ++ I L++ +++ GVK DGVTF+ +L+ CS SG
Sbjct: 434 RLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSG 493
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F+SM+ DH++ P C+ MP D W L
Sbjct: 494 LVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATL 553
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++ ++ + K AA
Sbjct: 554 LSACRLRGDMEIGKWAA 570
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 62/114 (54%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q+ F ++L++C L++L G+QI I + Y +++FVGSA +++Y C
Sbjct: 277 QYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFR 336
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W MI GY +N E+A+ ++ ++ G+K D T ++++ C++
Sbjct: 337 RMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCAN 390
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P++ + V+ + L LGRQ+ +I++ G+G F GS +++Y G
Sbjct: 141 VRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDAR 200
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V N MI G + V +A +L++ I + D +T+ ++T + +G
Sbjct: 201 RVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAI----EERDSITWTTMVTGLTQNG 256
Query: 104 LVYAEVEIFNSMEHD 118
L +++F M +
Sbjct: 257 LESEALDVFRRMRAE 271
>gi|449493040|ref|XP_004159175.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g18840-like [Cucumis sativus]
Length = 1096
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 97/194 (50%), Gaps = 41/194 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +++ +CA ++L G+QI + +++ G D + S+ +++Y CG
Sbjct: 810 PDVLILISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSSLVDMYSKCGSIIYAERI 869
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ +N MI GYA + + +A+ L+K+++ G K D +TFVA+L+ C H GLV
Sbjct: 870 FREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAITFVALLSACRHGGLV 929
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F+SM +D+ + P+ C+ +P + D V+WG ++
Sbjct: 930 ELGEHFFDSMSNDYNICPEIDHYACMIDLYGRANQLDKALEFMRKIPIQLDAVIWGAFLN 989
Query: 142 SCQVHSNVRLAKKA 155
+C+++ N LA+KA
Sbjct: 990 ACRINGNAELARKA 1003
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 50/147 (34%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F T+L+ AKL + G+Q+ + ++K +F S+ I++Y CG
Sbjct: 546 EFTLITMLNLTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYY 605
Query: 55 ----------------------------------------VTWNEMIHGYAENEYVEQAI 74
V WN MI G+ +N Y E+++
Sbjct: 606 GCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESL 665
Query: 75 SLYKDIIASGVKHDGVTFVAILTPCSH 101
L+ + V + TF ++L+ CS+
Sbjct: 666 KLFVRMADEKVGWNEHTFASVLSACSN 692
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC 53
F +VLS+C+ L SL LG+++ ++K+ + F+ S +++YC C
Sbjct: 683 FASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKC 728
>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
Length = 936
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 94/193 (48%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+ F +VL++C +SL G+ I + V+ G +D+ V +A N+Y CG
Sbjct: 564 KVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFD 623
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+WN M+ YA++ E+ + L + + GVK +G+TFV++L+ CSH+GL+
Sbjct: 624 SMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAE 683
Query: 108 EVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSC 143
+ F+S+ HD ++ K CL MP + +V W L+ +C
Sbjct: 684 GCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGAC 743
Query: 144 QVHSNVRLAKKAA 156
+V ++ K AA
Sbjct: 744 RVQKDLDRGKLAA 756
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
F VL+S +L G+ I + + + + D+FV +A +N Y CG
Sbjct: 163 FLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMP 222
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
TWN MI Y+ +E +A +++ + G + D VTF++IL C
Sbjct: 223 CRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDAC 271
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKD-GYGNDIFVGSAPINIYCNCG----- 54
+ P + F T+L +C + S R+++ + V++ G G V ++ +N+Y G
Sbjct: 459 IQPDRVNFMTILGACT-IGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVA 517
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
WN +I+GYA + +A+ Y+ + + D VTF+++L C+ S
Sbjct: 518 EVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSS 577
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+ F ++L +C +L G+ + I + + D+FVG+A I +Y C
Sbjct: 261 RVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFG 320
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+TW+ +I +A++ + +A+ ++ + G+ + VTF+++L
Sbjct: 321 RMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLL 369
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F ++L+ S L +I I + G + + +A +N+Y C
Sbjct: 358 ILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDAR 417
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN MI Y + E + A+ L++ + G++ D V F+ IL C+
Sbjct: 418 TVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACT 474
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P VL+SC L G + ++ G+ + V +A +N+Y CG
Sbjct: 54 VAPNAITLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQ 113
Query: 55 -----------VTWNEMIHGYA-ENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
VTWN M+ Y+ + + A+ L+ ++ GVK + +TF+ +L
Sbjct: 114 SVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVL 167
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN MI Y+ + ++A++L+ ++ GV + +T VA+L C
Sbjct: 24 VSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNSC 68
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P +VLS+CA + +L G + I K+G D FV +A +++Y CG
Sbjct: 267 VKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKAL 326
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN +I G + + + A+ ++ +++ G K + VTFV +L+ CS +G
Sbjct: 327 EVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAG 386
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ E+FN M H H ++P C+ MP K+ VVW L
Sbjct: 387 LLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESL 446
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ H NV LA++ A
Sbjct: 447 LGACRNHGNVELAERVA 463
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 45/167 (26%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ FT L SC S + GRQI ++K G G+D+F+ + I++Y +CG
Sbjct: 104 VLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDAR 163
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVK----------------- 86
V+WN ++ YAE +E A L+ ++ V+
Sbjct: 164 HLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEE 223
Query: 87 ----------HDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP 123
+ V++ A++T SH+G + +F M+H VKP
Sbjct: 224 ARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHA-GVKP 269
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 28/119 (23%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG----------- 103
V+WN MI GY+ + + L++D+ +GVK D T V++L+ C+H G
Sbjct: 237 VSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAY 296
Query: 104 -----------LVYAEVEIFN---SMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSN 148
+ A V++++ S+E EV CL + D+ W ++S H +
Sbjct: 297 IDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCL---RKDISTWNSIISGLSTHGS 352
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 41/191 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------T 56
P + +VL++C ++S+L LG + + +VK GY ++ VG+A I +Y NCG
Sbjct: 327 PDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRV 386
Query: 57 WNEM-----------IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++EM + G+ + +AIS++ +++ GV D F A+L+ CSHSGLV
Sbjct: 387 FDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLV 446
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
EIF M D+ V+P+ CL M K + VW L+S
Sbjct: 447 DEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLS 506
Query: 142 SCQVHSNVRLA 152
+C++H NV+LA
Sbjct: 507 ACRLHRNVKLA 517
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F + VL +C L +GR++ +V G D++VG++ +++Y G
Sbjct: 122 PDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVV 181
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
+WN M+ G+ +N A ++ D+ G D T +A+L+ C
Sbjct: 182 FDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSAC 235
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 20/111 (18%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDI---FVGSAPINIYCNCG------------- 54
+LS+C + L +G++I +V++G + F+ ++ I++YCNC
Sbjct: 231 LLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLR 290
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I GY + QA+ L+ ++ G D VT +++L C+
Sbjct: 291 VKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQ 341
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
WN MI GYA N +A+ LY ++ G K D T+ +L C
Sbjct: 92 WNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKAC 134
>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QF ++V+ +CA L+++ G+Q+ + K G+ ++IFV S+ I++Y CG
Sbjct: 266 QFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFR 325
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V WN MI G + + + + L++ + G+ + VTFV++L+ C H GLV
Sbjct: 326 DVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKK 385
Query: 108 EVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSC 143
+ F+ M +H + P C+ +P+ +WG L++SC
Sbjct: 386 GQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASC 445
Query: 144 QVHSNVRLAKKAA 156
+ H N+ LA+ AA
Sbjct: 446 RTHGNLELAEVAA 458
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++F ++VL +CA +L + + +K ++FV +A +++Y CG
Sbjct: 164 SEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVF 223
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTW+ M GY +NE EQA++L++ +G+KHD +++ C+
Sbjct: 224 ESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACA 277
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 17/107 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+L CAK L G+ +I+ G D+ + IN+Y CG
Sbjct: 70 ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN MI +N +A+ L + G T ++L C+
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACA 176
>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
Length = 1408
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T +L +CA LS L G++I +++G+ D+FV +A I++Y
Sbjct: 1034 PNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKV 1093
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN MI G+A ++AIS++ ++ GV D +TF A+L+ C +SGL+
Sbjct: 1094 FRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLI 1153
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F+SM D+ + P+ C+ MP K D +WG L+
Sbjct: 1154 GEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLG 1213
Query: 142 SCQVHSNVRLAKKAA 156
SC++H N+ A+ AA
Sbjct: 1214 SCRIHKNLXFAETAA 1228
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------------- 53
++ L +C ++ ++LG +I ++K G+ D+++ A +N Y C
Sbjct: 677 YSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMP 736
Query: 54 ---GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+ WNE I ++E +++ + L++ + S +K + T V +L C G + A +
Sbjct: 737 NPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQ 796
Query: 111 I 111
I
Sbjct: 797 I 797
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%), Gaps = 17/112 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC----------- 51
P T+VL + ++L L +G++ ++++G+ D++VG++ I++Y
Sbjct: 909 PNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAV 968
Query: 52 -----NCGV-TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
N + WN ++ GY+ E A+ L + G+K D VT+ +++
Sbjct: 969 FDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMIS 1020
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 17/104 (16%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
VL +C K+ +L +QI + + G +D+ + + I++Y G
Sbjct: 781 VLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRN 840
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
+WN MI YA ++ A SL+ ++ +S +K D VT+ +L+
Sbjct: 841 TSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLS 884
>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
Length = 676
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F F+ VL++CA +S LG+++ + + G+ F SA +++Y CG
Sbjct: 300 IRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAE 359
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+W +I GYA+N ++AI ++ ++ SG + D +TFV +L+ C+H+G
Sbjct: 360 RVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAG 419
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV ++ F+S++ + + C+ M K D +W L
Sbjct: 420 LVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASL 479
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C++H N++LA++AA
Sbjct: 480 LGGCRIHGNLKLAQRAA 496
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
Query: 21 LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHG 63
L +G++I I++ G +D V SA ++Y CG VTW MI
Sbjct: 219 LRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDR 278
Query: 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
Y ++ ++ L+ D++ SG++ + TF +L C++
Sbjct: 279 YFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACAN 316
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 21/137 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ ++T++ SC K L G+++ I G+ +F+ + + +Y C
Sbjct: 68 PSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKL 127
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN +I GYA+ +++A SL+ + + D ++ A+++
Sbjct: 128 FDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKM----PERDNFSWTAMISGYVRHDRP 183
Query: 106 YAEVEIFNSMEHDHEVK 122
+E+F M+ K
Sbjct: 184 NEALELFRMMKRSDNSK 200
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P VLS+CA+L +L LG+ + GY +++V +A +++Y CGV
Sbjct: 242 VVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETAL 301
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN +I G A + + A++L+ + +G DG+TF+ IL C+H G
Sbjct: 302 DVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMG 361
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F SM D+ + P+ C+ MP + D V+W L
Sbjct: 362 LVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAAL 421
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C+V+ NV LA+ A
Sbjct: 422 LGACRVYKNVELAELA 437
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 17/81 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F +L SC K+++L G ++ ++K G+ + FV + I++Y + G
Sbjct: 47 VMPNCFTFPVILKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAY 106
Query: 55 -----------VTWNEMIHGY 64
+ W MI+GY
Sbjct: 107 RVFGEMIERNVIAWTAMINGY 127
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 101/196 (51%), Gaps = 44/196 (22%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG--------- 54
+ VLS+CA+L + LG+++ + +++G + + + +A +++Y CG
Sbjct: 132 EVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIF 191
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+N MI G A++ E AI++++++I++G+K D VTFV +L C HSGL
Sbjct: 192 RRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGL 251
Query: 105 VYAEVEIFNSMEHDHEVKPK---------------CL---------MPYKDDLVVWGDLV 140
+ ++F SM + + +KP+ CL MP++ + V+W L+
Sbjct: 252 IEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALL 311
Query: 141 SSCQVHSNVRLAKKAA 156
S+C+ H NV++ + A
Sbjct: 312 SACRTHGNVKIGEIAG 327
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 21/118 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F +L+SCA+LSSL G ++ + I+K G+ +D+FV +A I++Y G
Sbjct: 33 PNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTL 92
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N MI GYAE E A+ L+ ++ S D VT VA+L+ C+ G
Sbjct: 93 FDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNS----DEVTLVAVLSACARLG 146
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVK-HDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
WN MI GY+ ++ +AI LY +IA G+ + TF +L C+ +S+
Sbjct: 2 WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCAR----------LSSL 51
Query: 116 EHDHEVKPKCLM-PYKDDLVVWGDLVSSCQVHSNVRLAK 153
E HEV + ++ DL V L+ V N+ LA+
Sbjct: 52 EPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLAR 90
>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 837
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
TQ +++VL +CA +S+ QI I K + ND +G++ I+ Y CG
Sbjct: 464 TQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVF 523
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++WN +I GYA + A+ L+ + S V+ + +TFVA+L+ CS +GLV
Sbjct: 524 QHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVN 583
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+ +F+SM DH +KP C+ +P +VW L+SS
Sbjct: 584 HGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSS 643
Query: 143 CQVHSNVRLAKKAA 156
C +H NV L + +A
Sbjct: 644 CIIHKNVALGRFSA 657
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 70/133 (52%), Gaps = 23/133 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ ++VL +C + L G+QI +K G+ +D+FVG+A ++ Y C
Sbjct: 360 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSL 419
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS--- 100
V+WN ++ G++++ E+A+S++ ++ A+ + VT+ ++L C+
Sbjct: 420 KIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTA 479
Query: 101 ---HSGLVYAEVE 110
H+G ++ +E
Sbjct: 480 SIRHAGQIHCSIE 492
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F T+VL + L S+ LG+ I +K + VG A +++Y CG
Sbjct: 261 PNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLA 320
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ + MI YA++ EQA L+ ++ S V + + ++L C++ +V
Sbjct: 321 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTN--MV 378
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVW----------GDLVSSCQVHSNVRLAKKA 155
+ F H+H +K + ++ DL V D+ SS ++ S++R A +
Sbjct: 379 QLD---FGKQIHNHAIK----IGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEV 431
Query: 156 A 156
+
Sbjct: 432 S 432
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC---------- 53
QF TT+L + + L + + K G+ ++ FVGS I+ Y C
Sbjct: 161 NQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVF 220
Query: 54 -------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V W M+ Y+EN+ E A ++ + SG K + ++L
Sbjct: 221 NGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVL 270
>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
Length = 608
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F TV+ A L++L LGRQ+ +++ G+ + + VG+A +++Y C
Sbjct: 237 FVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEG 296
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
++W ++ G A++ E+ +LY ++ +G+K + VTFV ++ CSH+GLV
Sbjct: 297 ITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKG 356
Query: 109 VEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVSSCQ 144
++F+SM+ ++ +KP MPY+ D WG L+S+C+
Sbjct: 357 RQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACK 416
Query: 145 VHSNVRLAKKAA 156
H++ ++ + A
Sbjct: 417 KHNDTQMCLRVA 428
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 21/135 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F ++ S+ +L SL LGRQ+ Y D V S+ I++YC CG
Sbjct: 99 LRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDAR 158
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W +I GYA N +A+ L++ + A G+ T+ A+++ +G
Sbjct: 159 KVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGL----FTWTALISGFVKAG 214
Query: 104 LVYAEVEIFNSMEHD 118
+ +F M D
Sbjct: 215 NYTGAMGLFVEMRRD 229
>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 94/193 (48%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QF ++V+ +CA L+++ G+Q+ + K G+ ++IFV S+ I++Y CG
Sbjct: 266 QFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFR 325
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V WN MI G + + + + L++ + G+ + VTFV++L+ C H GLV
Sbjct: 326 DVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRK 385
Query: 108 EVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSC 143
+ F+ M +H + P C+ +P+ +WG L++SC
Sbjct: 386 GQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASC 445
Query: 144 QVHSNVRLAKKAA 156
+ H N+ LA+ AA
Sbjct: 446 RTHGNLELAEVAA 458
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++F ++VL +CA +L + + +K ++FV +A +++Y CG
Sbjct: 164 SEFTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVF 223
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTW+ M GY +NE EQA++L++ +G+KHD +++ C+
Sbjct: 224 ESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACA 277
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 17/107 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+L CAK L G+ +I+ G D+ + IN+Y CG
Sbjct: 70 ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN MI +N +A+ L + G T ++L C+
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACA 176
>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14050, mitochondrial-like [Cucumis sativus]
Length = 611
Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
++V+ CA L+ L LG+QI ++ G+ + +F+ +A +++Y C
Sbjct: 241 LSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMP 300
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
++W +I G A++ E+A++LY +++ S +K + VTFV +L CSH+GLV E
Sbjct: 301 RKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRE 360
Query: 111 IFNSMEHDHEVKPK-----CLM-------------------PYKDDLVVWGDLVSSCQVH 146
+F SM D+ + P CL+ P+K D W L+S+C H
Sbjct: 361 LFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRH 420
Query: 147 SNVRLAKKAA 156
+N+ + + A
Sbjct: 421 NNLEMGVRIA 430
Score = 49.7 bits (117), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 21/135 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F F ++ +C+ L L LG+Q+ R + + +D V S+ I++Y CG
Sbjct: 101 LQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEAR 160
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GYA + +A+ L+ + + V+ + ++ A+++ SG
Sbjct: 161 AVFDSILFKNSVSWTSMISGYARSGRKCEAMDLF---LQAPVR-NLFSWTALISGLIQSG 216
Query: 104 LVYAEVEIFNSMEHD 118
+FN M +
Sbjct: 217 HGIYSFSLFNEMRRE 231
>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Cucumis sativus]
Length = 611
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
++V+ CA L+ L LG+QI ++ G+ + +F+ +A +++Y C
Sbjct: 241 LSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMP 300
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
++W +I G A++ E+A++LY +++ S +K + VTFV +L CSH+GLV E
Sbjct: 301 RKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRE 360
Query: 111 IFNSMEHDHEVKPK-----CLM-------------------PYKDDLVVWGDLVSSCQVH 146
+F SM D+ + P CL+ P+K D W L+S+C H
Sbjct: 361 LFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRH 420
Query: 147 SNVRLAKKAA 156
+N+ + + A
Sbjct: 421 NNLEMGVRIA 430
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 21/135 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F F ++ +C+ L L LG+Q+ R + + +D V S+ I++Y CG
Sbjct: 101 LQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDAR 160
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GYA + +A+ L+ + + V+ + ++ A+++ SG
Sbjct: 161 AVFDSILFKNSVSWTSMISGYARSGRKCEAMDLF---LQAPVR-NLFSWTALISGLIQSG 216
Query: 104 LVYAEVEIFNSMEHD 118
+FN M +
Sbjct: 217 HGIYSFSLFNEMRRE 231
>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
Length = 1021
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 97/198 (48%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V + FT+VL +C+++++L G++I IVK G+ + SA +++Y CG
Sbjct: 726 VRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDMYSKCGDVISSF 785
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+ WN MI G+A+N Y +A+ L++ + S +K D VT + +L CSH+
Sbjct: 786 EIFKELKNRQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTLLGVLIACSHA 845
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GL+ + F+SM + + P+ CL +P++ D V+W
Sbjct: 846 GLISEGLHFFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLPFRADGVIWAT 905
Query: 139 LVSSCQVHSNVRLAKKAA 156
+++CQ+H + K AA
Sbjct: 906 YLAACQMHKDEERGKVAA 923
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT+ F ++LS+ A +++ GRQI VK G ++FVGS+ IN+Y G
Sbjct: 320 LMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAK 379
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V WN +++G+ +NE E+ I +++ + + ++ D TFV++L C
Sbjct: 380 KVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGAC 435
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 17/113 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F +VL +C L SL LGRQ+ +K+G D+FV +A +++Y G
Sbjct: 426 FTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALFSL 485
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I G A NE +AI++ K + G+ D V+F + CS+
Sbjct: 486 IPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSN 538
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P QF VLS+C++L +L GRQ+ ++K G+ + +F + +++Y CG
Sbjct: 155 PDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRM 214
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ W MI GY +QA++L+ + G D VT V I++ + G
Sbjct: 215 FDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASMG 272
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 26/171 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG------- 54
P+ F FT++LS C + S +G+Q+ +K N D +G + + IY C
Sbjct: 625 PSNFTFTSILSGCTRPVSSVIGKQVHCYTLKSAILNQDTSLGISLVGIYLKCKLLEDANK 684
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W I GYA+N Y Q++ ++ + + V+ D TF ++L CS
Sbjct: 685 LLEEVPDHKNLVEWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEMA 744
Query: 104 LVYAEVE----IFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVR 150
+ E I S +E LM D GD++SS ++ ++
Sbjct: 745 ALTDGKEIHGLIVKSGFVSYETATSALM---DMYSKCGDVISSFEIFKELK 792
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+ F T +++C+ + ++ G+QI + +K ++ VGS+ I++Y G
Sbjct: 526 EVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLA 585
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V N +I G +N ++AI L++ ++ G K TF +IL+ C+
Sbjct: 586 HVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTR 639
>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 530
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F +V+ +C+ L+ +G+Q+ +++K + ++ GSA I++Y CG
Sbjct: 278 PNLSTFASVIGACSVLAGFEIGQQVQGQLLKREFFTNVKTGSALIDMYSKCGRIEDARRA 337
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+W+ MI GY +N ++A+ L+ + ++ + VTF+ L+ C H+GLV
Sbjct: 338 FEQMPEKNVFSWSSMIDGYGKNGRPDEALQLFHKMQDCCIEPNYVTFLGALSACGHAGLV 397
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
EIF SME ++ +KP C+ MP K VW L+S
Sbjct: 398 SKGREIFESMEREYSLKPGMEHYACMVDLLGRAGSLNLAWEFVMGMPEKPSSDVWAALLS 457
Query: 142 SCQVHSNVRLAKKAA 156
+C +H NV +A AA
Sbjct: 458 ACNLHGNVEMASVAA 472
>gi|449461160|ref|XP_004148310.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g18840-like [Cucumis
sativus]
Length = 1096
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 97/194 (50%), Gaps = 41/194 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +++ +CA ++L G+QI + +++ G D + S+ +++Y CG
Sbjct: 810 PDVLILISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSSLVDMYSKCGSIIYAERI 869
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ +N MI GYA + + +A+ L+K+++ G K D +TFVA+L+ C H GLV
Sbjct: 870 FREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAITFVALLSACRHGGLV 929
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F+SM +D+ + P+ C+ +P + D V+WG ++
Sbjct: 930 ELGEHFFDSMSNDYNICPEIDHYACMIDLYGRANQLDKALEFMRKIPIQLDAVIWGAFLN 989
Query: 142 SCQVHSNVRLAKKA 155
+C+++ N LA+KA
Sbjct: 990 ACRINGNAELARKA 1003
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 50/147 (34%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F T+L+ AKL + G+Q+ + ++K +F S+ I++Y CG
Sbjct: 546 EFTLITMLNLTAKLCVISYGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYY 605
Query: 55 ----------------------------------------VTWNEMIHGYAENEYVEQAI 74
V WN MI G+ +N Y E+++
Sbjct: 606 GCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESL 665
Query: 75 SLYKDIIASGVKHDGVTFVAILTPCSH 101
L+ + V + TF ++L+ CS+
Sbjct: 666 KLFVRMADEKVGWNEHTFASVLSACSN 692
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC 53
F +VLS+C+ L SL LG+++ ++K+ + F+ S +++YC C
Sbjct: 683 FASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSGLVDVYCKC 728
>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Cucumis sativus]
Length = 667
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++VL C+ LS+L LGRQ+ + K D ++ I++YC CG
Sbjct: 291 VRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAW 350
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TWN MI GYA++ +A+ L+ + +K D +TFVA++ C+H+G
Sbjct: 351 KLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAG 410
Query: 104 LVYAEVEIFNSMEHDH--EVKP---KCL-------------------MPYKDDLVVWGDL 139
V V+ F SM+ + E KP C+ MP+ ++G L
Sbjct: 411 FVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTL 470
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N+ LA+ AA
Sbjct: 471 LGACRIHKNLDLAEFAA 487
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTWN MI GY EN E + ++K +I S V+ + ++ ++L CS+
Sbjct: 261 VTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSN 307
>gi|356495756|ref|XP_003516739.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71420-like [Glycine max]
Length = 782
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 90/195 (46%), Gaps = 44/195 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F+ L +CA + I ++++K G+ D + +A ++ Y CG
Sbjct: 407 PDWYTFSIALKACAYFVTEQHAMAIHSQVIKKGFQEDTVLCNALMHAYARCGSLALSEQV 466
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN M+ YA + + A+ L++ + V D TFVA+L+ CSH GLV
Sbjct: 467 FNEMGCHDLVSWNSMLKSYAIHGQAKDALELFQQM---NVCPDSATFVALLSACSHVGLV 523
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
V++FNSM DH V P+ C+ MP K D V+W L+
Sbjct: 524 DEGVKLFNSMSDDHGVVPQLDHYSCMVDLYGRAGKIFEAEELIRKMPMKPDSVIWSSLLG 583
Query: 142 SCQVHSNVRLAKKAA 156
SC+ H RLAK AA
Sbjct: 584 SCRKHGETRLAKLAA 598
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 18/79 (22%)
Query: 38 NDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQAISLYKDI 80
ND+F+ + IN+YC CG V+W +I G+A++ V + SL+ +
Sbjct: 125 NDVFLTNHIINMYCKCGHLAYARYVFDQMSHRNIVSWTALISGHAQSGLVRECFSLFSGL 184
Query: 81 IASGVKHDGVTFVAILTPC 99
+A + + F ++L+ C
Sbjct: 185 LAH-FRPNEFAFASLLSAC 202
>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
Length = 1012
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
TQ +++VL +CA +S+ QI I K + ND +G++ I+ Y CG
Sbjct: 464 TQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVF 523
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++WN +I GYA + A+ L+ + S V+ + +TFVA+L+ CS +GLV
Sbjct: 524 QHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVN 583
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+ +F+SM DH +KP C+ +P +VW L+SS
Sbjct: 584 HGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSS 643
Query: 143 CQVHSNVRLAKKAA 156
C +H NV L + +A
Sbjct: 644 CIIHKNVALGRFSA 657
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 70/133 (52%), Gaps = 23/133 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ ++VL +C + L G+QI +K G+ +D+FVG+A ++ Y C
Sbjct: 360 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSL 419
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS--- 100
V+WN ++ G++++ E+A+S++ ++ A+ + VT+ ++L C+
Sbjct: 420 KIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTA 479
Query: 101 ---HSGLVYAEVE 110
H+G ++ +E
Sbjct: 480 SIRHAGQIHCSIE 492
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 36/181 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F T+VL + L S+ LG+ I +K + VG A +++Y CG
Sbjct: 261 PNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLA 320
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ + MI YA++ EQA L+ ++ S V + + ++L C++ +V
Sbjct: 321 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTN--MV 378
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVW----------GDLVSSCQVHSNVRLAKKA 155
+ F H+H +K + ++ DL V D+ SS ++ S++R A +
Sbjct: 379 QLD---FGKQIHNHAIK----IGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEV 431
Query: 156 A 156
+
Sbjct: 432 S 432
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC---------- 53
QF TT+L + + L + + K G+ ++ FVGS I+ Y C
Sbjct: 161 NQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVF 220
Query: 54 -------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V W M+ Y+EN+ E A ++ + SG K + ++L
Sbjct: 221 NGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVL 270
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 48/197 (24%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F++++ +CA L++L LG+Q+ I ++G+ +IF+ S+ +++Y CG
Sbjct: 336 IKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAK 395
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI G A + AI L++ + G+K A+LT CSH G
Sbjct: 396 QIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGG 448
Query: 104 LVYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDL 139
LV + FNSM D + P C M +W L
Sbjct: 449 LVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATL 508
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+VH N+ +A+K A
Sbjct: 509 LSACRVHKNIDMAEKVA 525
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 53/145 (36%), Gaps = 49/145 (33%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+YP F +VL SCA L L LG + I++ G D++ G+A +N+Y
Sbjct: 102 LYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESG 161
Query: 55 -------------------------------------------VTWNEMIHGYAENEYVE 71
V+WN +I G A N E
Sbjct: 162 RQRLGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYE 221
Query: 72 QAISLYKDIIASGVKHDGVTFVAIL 96
+ + + +++ + +K D T ++L
Sbjct: 222 ETLRMIREMGGANLKPDSFTLSSVL 246
>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 40/191 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q T++LS+C L ++ LG Q I K G+ +FVG++ I +Y CG
Sbjct: 392 IKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGYEDGFC 451
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+TWN ++ G A+N ++AI +++ + G+ D ++F+ +L CSH+GL
Sbjct: 452 VFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGL 511
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLV 140
V FNSM + + P C+ MP K D V+W L+
Sbjct: 512 VDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALL 571
Query: 141 SSCQVHSNVRL 151
+C++H N L
Sbjct: 572 GACRIHRNNEL 582
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 19/122 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ FT+ LS+CA + + +GR I + +K G + +V + I++Y CG
Sbjct: 291 PSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHV 350
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I Y + + E A+ L+ D++A G+K + +T ++L+ C + G
Sbjct: 351 FRTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLG 410
Query: 104 LV 105
+
Sbjct: 411 AI 412
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+WN MI+GY++N V++A L+ + ++ T+ +LT + G + E+F S
Sbjct: 71 VSWNSMINGYSQNGKVDEARLLFDAFVGKNIR----TWTILLTGYAKEGRIEEAREVFES 126
Query: 115 MEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
M + ++V W ++S + +++ A+K
Sbjct: 127 MT-------------ERNVVSWNAMISGYVQNGDLKNARK 153
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P T+VLS+CA L +L G + I + G DI +G+A +++Y CG
Sbjct: 299 ISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMAL 358
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN ++ G A + V +A++L++ +I SGVK + +TF+AILT C H G
Sbjct: 359 KIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCG 418
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F++M + + PK C+ MP K D+++WG L
Sbjct: 419 LVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLL 478
Query: 140 VSSCQVHSNVRLAKK 154
+++C N+ L+ +
Sbjct: 479 LNACTTVGNIELSHR 493
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F +L +C+ S GRQ+ +VK G D +V ++ I Y CG
Sbjct: 103 PDMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKV 162
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G+ + + ++AIS++ V+ T V++L C+ +G
Sbjct: 163 FDEMLVRDVVSWNSLISGFMKAGHFDEAISVF---FRMDVEPSMTTLVSVLAACARNG 217
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 19/110 (17%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC----------------- 53
+L S +L + RQI ++V G D FV S + + N
Sbjct: 8 LLDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYGDYACDYLEQGNTR 67
Query: 54 --GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+N +I+GY E+ + A+S+Y+ ++ G D TF +L CS+
Sbjct: 68 LGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSN 117
>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 745
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
F + VL +C+ L+S G+Q+ + +K GY ++ V +A I++Y CG
Sbjct: 443 HFVISIVLKACSSLASHQHGKQVHSLCLKKGYESEGVVTTALIDMYAKCGDIEDALSLFG 502
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
++W +I G A+N E+AISL +I SG K + +T + +LT C HSGLV
Sbjct: 503 CLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLTACRHSGLVEE 562
Query: 108 EVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSC 143
++FNS+E +H + P C+ MP+K D +W L+ +C
Sbjct: 563 AWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFEEAVKLISEMPFKPDKTIWSSLLGAC 622
Query: 144 QVHSNVRLAKKAA 156
+ N LA A
Sbjct: 623 GTYKNRDLANIVA 635
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 24/118 (20%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV--------- 55
+F F +VL +C L LGR+I I+K G+ + + SA I++Y +C +
Sbjct: 236 EFTFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFD 295
Query: 56 -------------TWNEMIHGYAEN-EYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
WN M+ G+ N +YVE A+S+ + SGV+ D TF +L C
Sbjct: 296 QYFRNSSVSESLALWNSMLSGHVVNGDYVE-ALSMISHMHRSGVRFDFYTFSIVLKIC 352
Score = 45.8 bits (107), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 27/138 (19%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F+ VL C +L L Q+ ++ GY D VGS I+IY G
Sbjct: 343 YTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRLFER 402
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V W+ +I G A + A SL+ D+I G++ D +L CS
Sbjct: 403 LPDKDVVAWSSLITGCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSS------- 455
Query: 109 VEIFNSMEHDHEVKPKCL 126
S +H +V CL
Sbjct: 456 ---LASHQHGKQVHSLCL 470
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P QF ++ VL +C + ++ LG+ + I + DI + +A +++Y CG
Sbjct: 103 PNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRV 162
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDI 80
+WN +I GYA+ ++ A+ L+ +
Sbjct: 163 FCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKM 197
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 23/128 (17%)
Query: 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTW 57
C + S+ + + + I+K G+ N IF+ + I++Y C V+W
Sbjct: 13 CIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSW 72
Query: 58 NEMIHGYAENEYVEQAISLYKDIIASGVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSME 116
M+ + +A+SLY ++I S ++ + + A+L C GLV VE+ M
Sbjct: 73 TTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKAC---GLV-RNVEL-GKMV 127
Query: 117 HDHEVKPK 124
H H + K
Sbjct: 128 HYHIFQAK 135
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 42/188 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++L++CA+ SL LG++I + K G V +A I+++C CG
Sbjct: 627 SILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQ 686
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I G+A + + ++A+ L+ + G D VT + +L+ C+H G V
Sbjct: 687 KDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRY 746
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F++ME D+ + P+ C+ MP++ + V+WG L+S+C++H
Sbjct: 747 FSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHK 806
Query: 148 NVRLAKKA 155
NV A+ A
Sbjct: 807 NVEYAEIA 814
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 47/200 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P ++ + LS C+ +++L GRQ+ VK G+ DIFVGSA +++Y CG
Sbjct: 350 IKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAE 409
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I GY+++ E+A+ ++ +++ G+ D TF+ +L+ CS G
Sbjct: 410 AIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMG 469
Query: 104 LVYAEVEIFNSMEHDHEVKPKC---------------------------LMPYKDDLVVW 136
LV + F+SM + + P L PY ++W
Sbjct: 470 LVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYS---LIW 526
Query: 137 GDLVSSCQVHSNVRLAKKAA 156
++ +C++H NV +KAA
Sbjct: 527 ETVLGACKLHGNVDFGEKAA 546
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC------NCGV- 55
P F F +VL SC+ L G+Q+ I+K+ +D FVG+A +++Y + GV
Sbjct: 251 PNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVA 310
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+W +I GYA+ + E+A+ ++ + G+K + T + L+ CSH
Sbjct: 311 FDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSH 366
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++F +TVL CA SL G+ + ++ G D F+G + +++Y CG
Sbjct: 50 SKFTLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVF 109
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ MI G + + ++A L+ + G + + T ++++ ++ G
Sbjct: 110 TKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMG 166
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P QF ++++S+ + L G+ I I K G+ +D V + I +Y
Sbjct: 150 PNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKV 209
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN ++ G+ +++ + ++ ++ G K + TF+++L CS
Sbjct: 210 FEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCS 264
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F + LS C+++++L GRQ+ + +K G D+FV SA +++Y CG
Sbjct: 629 VKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAE 688
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I GY+++ +A+ ++ ++ G D VTF+ +L+ CSH G
Sbjct: 689 VVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMG 748
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ + FNS+ + + P C+ M ++++W +
Sbjct: 749 LIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETV 808
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N+ ++AA
Sbjct: 809 LGACKMHGNIEFGERAA 825
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 17/124 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V +F + T L +C+ L G+Q+ +K G +D+FVGSA +++Y CG
Sbjct: 225 VEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAE 284
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +++G+A+ E+ ++L+ + S + T +L C++SG
Sbjct: 285 RVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSG 344
Query: 104 LVYA 107
+ A
Sbjct: 345 NLRA 348
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F ++L SC+ LS + LG+Q+ +IVK+ + FVG+A +++Y
Sbjct: 530 PNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETI 589
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
W ++ GYA++ E+A+ + + GVK + T + L+ CS
Sbjct: 590 FNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSR 645
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P QF +++S+ L L+ G I + K G+ D V +A + +Y G
Sbjct: 427 VIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGC 486
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN ++ G+ +NE + + ++ ++A G + TF++IL CS
Sbjct: 487 RVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCS 543
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
++ +L +CA L G+ I +++K G D + ++ +N+Y CG
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W +I G+ Y A++L+ ++ GV+ + T+ L CS
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACS 240
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++F +TVL CA +L G+ + + ++ G D F+ +++Y CG
Sbjct: 329 SKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVF 388
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V+W+ +I + +A ++K + SGV + T ++++ + G +Y
Sbjct: 389 VRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLY 448
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + LS+CA+L L G++I I ++ D F+ + ++ Y CG
Sbjct: 252 IRPDNVALVSTLSACAQLGELEKGKKIHDYIERNAMKVDTFLSTGLVDFYAKCGCVDIAL 311
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN M+ G A + Y E + + +I +GVK DG++ + +L CSHSG
Sbjct: 312 KIFDSSSDKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVKPDGISILGVLVGCSHSG 371
Query: 104 LVYAEVEIFNSMEHDHEV--KPK---CL-------------------MPYKDDLVVWGDL 139
LV ++F+ ME + V +PK C+ MP D+ VW L
Sbjct: 372 LVDEARKLFDEMESVYGVPREPKHYGCMADLLGRAGLIKKVMEMIKDMPRGGDMSVWSGL 431
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C++H +V +A+KAA
Sbjct: 432 LGGCRIHGDVEIAEKAA 448
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 50/161 (31%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY--------------- 50
FPFT L +CA+L +F R + +++K G+ +D++V ++ I+ Y
Sbjct: 127 FPFT--LKACAQLGGVFSARCLHCQVLKFGFLSDLYVMNSLIHGYMVSDMSNDAYKVFDE 184
Query: 51 ---------------------------------CNCGVTWNEMIHGYAENEYVEQAISLY 77
V+WN +I G A+ +Y E+AI L+
Sbjct: 185 SPQRDVVSYNVLIDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELF 244
Query: 78 KDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118
++ ++ D V V+ L+ C+ G + +I + +E +
Sbjct: 245 DFMMDLEIRPDNVALVSTLSACAQLGELEKGKKIHDYIERN 285
>gi|218192520|gb|EEC74947.1| hypothetical protein OsI_10926 [Oryza sativa Indica Group]
Length = 469
Score = 92.8 bits (229), Expect = 4e-17, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P+ +T+L + A ++ + G+++ V G ++ V SA +++Y CG
Sbjct: 218 VLPSSATISTILPAFANVADVKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEAR 277
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI G A + + ++A+ L+ ++ G K D +TF A+LT CS+ G
Sbjct: 278 RLFDKMPQRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGG 337
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V ++ +M+ ++ V+P+ C+ MP + D VWG L
Sbjct: 338 MVEVGKILYRAMQVEYSVEPRLEHYACMVHLLGRAGRLDEAYGFIRAMPLEPDRFVWGAL 397
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ H N+ LA+ AA
Sbjct: 398 LGACRSHGNIELAELAA 414
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 30/159 (18%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIV-KDGYGNDIFVGSAPINIYCNCG------ 54
+P P T L +CA L+ + GR I ++ + +D +A +++Y CG
Sbjct: 46 WPGAVP--TALRACAHLADVASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASAR 103
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V WN ++ YA + E A++L + G+ D VT+ +++ + +
Sbjct: 104 KVFDEMASRGDPVVWNALLACYARHGLPEHALALAVKMRGIGLCPDLVTWNIVVSGFALA 163
Query: 103 GLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
G ++ +M+ D ++ D+V W VS
Sbjct: 164 GDDLMAGDLVGAMKDDG---------FQPDVVTWTSRVS 193
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
+ P++F ++L++ A++ +L G I I K+ + V +A I++YC CG
Sbjct: 252 IQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNAL 311
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI G A N ++AI ++K + +S +K D ++F+A+LT C+H
Sbjct: 312 QVFEKIPCRSLSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKPDCISFMAVLTACNHGA 371
Query: 104 LVYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDL 139
+V +E F+ M++ + ++P MP + D ++WG L
Sbjct: 372 MVDEGMEFFSRMKNTYRIEPSIKHYNLMVDMISRAGFLEEAEQFIKTMPIEKDAIIWGCL 431
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+++ N +AK+AA
Sbjct: 432 LSACRIYGNTEMAKRAA 448
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +VLS+CA + +L +G + I K DI+VG+A I++YC CG
Sbjct: 1024 VKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGL 1083
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G A N + A++L+ ++ GV+ TFV +L C+H+G
Sbjct: 1084 SVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFVGVLLACAHAG 1143
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V +E F SME + + P+ C+ MP D+VVW L
Sbjct: 1144 VVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPMDPDVVVWRIL 1203
Query: 140 VSSCQVHSNVRLAKKA 155
+S+ QVH N+ LA+ A
Sbjct: 1204 LSASQVHGNLHLAEIA 1219
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 64/125 (51%), Gaps = 23/125 (18%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY---CNCG-------- 54
+PF +L +CA++S++ + R++K G+ +D+FV +A I+ Y C G
Sbjct: 799 YPF--LLKACARISNVSCT-TVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVFDE 855
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS---HSGLV 105
V+WN +I GY + + +++++ + VK D VT V ++ C+ G+V
Sbjct: 856 MSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVV 915
Query: 106 YAEVE 110
A +E
Sbjct: 916 DAMIE 920
>gi|413944451|gb|AFW77100.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 678
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F T+VL + + +S+L +G QI +R +K G +D V +A + +Y NCG
Sbjct: 418 FCITSVLRASSSISNLAVGLQIHSRTLKLGIDDDNSVQNALVTLYANCGSVQVALKIFNS 477
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
VTWN ++ ++++ AI L+ + G+ D TFV +L+ CS GLV
Sbjct: 478 MSNRDIVTWNALLTSFSQHGSEVAAIQLFDLMQEEGICPDAYTFVGLLSSCSRMGLVKEG 537
Query: 109 VEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQ 144
E FN M+ + ++PK C+ MPY+ D ++W L++SC+
Sbjct: 538 CEYFNEMKEKYNLEPKMVHYTCMVDLLARAGRFCDAMDFIDAMPYEPDQILWEALLASCK 597
Query: 145 VHSNVRLAKKAA 156
VH N+ L + AA
Sbjct: 598 VHGNLGLGRIAA 609
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 16/119 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+PT ++ +L L +G Q+ ++K G D +G+A + +Y CG
Sbjct: 212 VWPTNATYSCILKVFDTPDLLSVGMQLHGCLLKMGTEVDTALGTALMTMYGRCGGVDEIP 271
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++ ++ YA Y +AI ++K++I + D +L CS G
Sbjct: 272 RLACRIRHDALSRTALLGAYARTGYNAEAIGVFKEMIMKNMAIDQSAMTGMLQVCSSFG 330
>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 790
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P + F+ + SCA L + G+Q ++VK G+ + + G+A I +Y CGV
Sbjct: 415 PCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQV 474
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN +I ++ + +A+ +Y++++ G++ D +TF+ +LT CSH+GLV
Sbjct: 475 FRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLV 534
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVS 141
+ FNSME + + P +P+K +W L+S
Sbjct: 535 DQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLS 594
Query: 142 SCQVHSNVRLAKKAA 156
C+VH N+ L AA
Sbjct: 595 GCRVHGNMELGIIAA 609
Score = 35.4 bits (80), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 32/51 (62%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V +N MI GY ++A+ + + +++SG++ D T+ +++ C+++ L+
Sbjct: 252 VAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLL 302
>gi|449450760|ref|XP_004143130.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Cucumis sativus]
gi|449496662|ref|XP_004160192.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Cucumis sativus]
Length = 547
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 42/197 (21%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+PT +++L +CA + + G++I + G D++V +A +++Y CG
Sbjct: 297 HPTSATISSLLPACASVGNGRCGKEIHGHSLALGVEKDVYVRTALVDMYAKCGYFYEAKI 356
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH-DGVTFVAILTPCSHSG 103
TWN MI GYA + Y +AI L+ + K D +TF AILT C+H+G
Sbjct: 357 LFWRMSERNSATWNSMIFGYANHGYCNEAIELFHQMKDDDEKKLDHLTFTAILTACAHAG 416
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +F M+ + + P+ C+ MP K DL VWG L
Sbjct: 417 LVDLGRSLFQLMQSKYGIVPRVEHYACMVDVFGRAGKLAEAYDLIKTMPVKPDLYVWGAL 476
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ H + LA++AA
Sbjct: 477 LGACRKHGEIELAEEAA 493
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 26/158 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P+++ +VL +C LS GR++ T I+K+ +D +V SA I++Y G
Sbjct: 125 LRPSEYIIPSVLKACGHLSEKTTGRKLHTLILKNSLESDAYVCSALIDMYAKSGEVEKAR 184
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V N M+ GYA + E+A++L +++ G+K + VT+ ++T S G
Sbjct: 185 RVFESMAGKDLVALNAMVSGYAHHGLAEEALNLVEEMQVLGIKPNLVTWNTLVTGFSQIG 244
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
E+F ME + ++P D+V W ++S
Sbjct: 245 EEEMVRELFKEMEANG-IEP--------DVVSWTSVIS 273
>gi|297839569|ref|XP_002887666.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333507|gb|EFH63925.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 675
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 42/196 (21%)
Query: 3 PT-QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
PT + ++V+S+CA +SSL LG Q+ R G +D V S+ I++YC CG
Sbjct: 427 PTDEVSLSSVISACASISSLGLGEQVFARATIVGLDSDQIVSSSLIDLYCKCGSVENGRR 486
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V WN MI GYA N + +AI L+K + +G++ +TF+ +LT C++ GL
Sbjct: 487 VFDTMVKSDEVPWNSMISGYATNGHGFEAIDLFKKMSIAGIRPTQITFMVVLTACNYCGL 546
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLV 140
V +F +M+ DH P C+ MP+ D +W ++
Sbjct: 547 VEEGRLLFEAMKLDHGFVPDKEHFSCMVDLLARAGYVEEAIDLVEEMPFDADASMWSSVL 606
Query: 141 SSCQVHSNVRLAKKAA 156
C + + KK A
Sbjct: 607 RGCVANGYKAMGKKVA 622
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 67/187 (35%), Gaps = 61/187 (32%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
TTVL +CA+L +L G+QI +I+ G D + S+ +N+Y CG
Sbjct: 170 LTTVLKACAELEALKRGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIG 229
Query: 55 -----------------------------------VTWNEMIHGYAENEYVEQAISLYKD 79
+ WN MI GY N +A+ L+ +
Sbjct: 230 EPDDHSLSTLISGYANCGRVNESRRLFDRKSNRCVILWNSMISGYIANNMKFEALVLFNE 289
Query: 80 IIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG-- 137
+ + D T A++ C G + ++ H H C DD+VV
Sbjct: 290 -MRNETWEDSRTLAAVINACIGLGFLETGKQM-----HCH----ACKFGLVDDIVVASTL 339
Query: 138 -DLVSSC 143
D+ S C
Sbjct: 340 LDMYSKC 346
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VT N ++HGY N Y E+A+ L+K++ S D +T +L C+
Sbjct: 136 VTLNSLLHGYILNGYSEEALRLFKELKFSA---DAITLTTVLKACAE 179
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F VLS+CA+L +L LGR I + K G + FV A IN+Y CG
Sbjct: 253 VEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQ 312
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
T+N MI G A + +A+ L+ +++ V+ +G+TFV +L CSH G
Sbjct: 313 ALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGG 372
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV EIF SME H ++P+ C+ M + D + L
Sbjct: 373 LVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSL 432
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N+ + +K A
Sbjct: 433 LSACKIHKNIGMGEKVA 449
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 22/117 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWN-- 58
V + T +L +C +L G+++ ++K G G D + + +Y CGV +
Sbjct: 121 VLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDAR 180
Query: 59 EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
+M G E +D++A V ++ C G+V +E+FN M
Sbjct: 181 KMFDGMPE-----------RDVVACTV---------MIGSCFDCGMVEEAIEVFNEM 217
>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
lyrata]
gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
lyrata]
Length = 853
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 92/197 (46%), Gaps = 58/197 (29%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P ++ L C++LS+L LGRQI I +YC CG
Sbjct: 280 IRPNSSGLSSALLGCSELSALCLGRQIHQ-----------------IVMYCKCGELGDAW 322
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ E+A+ L+ ++ S K D +TFVA+L C+H+G
Sbjct: 323 KLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAG 382
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F+SM D+ V+P+ C+ MP++ V+G L
Sbjct: 383 LVDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVFGTL 442
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH NV LA+ AA
Sbjct: 443 LGACRVHKNVELAEFAA 459
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 31/116 (26%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS-----------HSG 103
VTWN MI GY EN E + L++ ++ G++ + + L CS H
Sbjct: 250 VTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCLGRQIHQI 309
Query: 104 LVYAEV-------EIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLA 152
++Y + ++F +M+ K D+V W ++S H N A
Sbjct: 310 VMYCKCGELGDAWKLFEAMK-------------KKDVVAWNAMISGYAQHGNAEKA 352
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 89/197 (45%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V +F +V+++CA+L +L +G + + + G D FVG+A I++Y CG
Sbjct: 251 VSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERAL 310
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW +I G A N Y E+AI ++ +I D VTF+ +LT C+H+G
Sbjct: 311 DVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAG 370
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDL 139
LV E F SM + + P + MP + +WG L
Sbjct: 371 LVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTL 430
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+VH N + + A
Sbjct: 431 LAACRVHGNSEIGELVA 447
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 56/150 (37%), Gaps = 49/150 (32%)
Query: 3 PTQFPFTTVLSSCAK-LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
PT + +VLS+C K + LG Q+ R+V G D+ V +A +++Y C
Sbjct: 120 PTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWK 179
Query: 55 -----------------------------------------VTWNEMIHGYAENEYVEQA 73
V+W MI GY +A
Sbjct: 180 VFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREA 239
Query: 74 ISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ +++++ S V D T V+++T C+ G
Sbjct: 240 LEMFREMQYSNVSADEFTMVSVITACAQLG 269
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + VLS+CA L +L LGR++ + ++G ++ + +A +++Y CG
Sbjct: 325 VKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDAC 384
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN MI G A + +++++ ++ +GV+ + VTF+ +L+ C+HSG
Sbjct: 385 LIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSG 444
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F+SM H + PK C+ M D ++WG L
Sbjct: 445 LVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGAL 504
Query: 140 VSSCQVHSNVRLAKK 154
+S+C++H N+ LA K
Sbjct: 505 LSACRIHRNLELADK 519
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 21/139 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P+ F F VL +C+ L S+ G QI T +++ G+G+D+FV ++ I++YC C
Sbjct: 91 PSNFTFPFVLKACSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNF 150
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I GY + VE+A L++++ ++ + V + A++ G
Sbjct: 151 WDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEM---PMRRNVVCWTAMINGYGKEGDF 207
Query: 106 YAEVEIFNSM-EHDHEVKP 123
+ +F M EV+P
Sbjct: 208 VEMLSLFRQMLVSADEVQP 226
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +LS+C+ L + +GR + I + + + +A I++Y CG
Sbjct: 224 VQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAW 283
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN +I G + +E+AI LY+ + A VK + +T V +L+ C+ G
Sbjct: 284 RIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLG 343
>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
Length = 981
Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 91/186 (48%), Gaps = 41/186 (22%)
Query: 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT--------------- 56
LSSCA L+SL G Q+ +K G +D +V +A +++Y CG
Sbjct: 557 LSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMNEMLQMVPDQAIRPQ 616
Query: 57 --WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
WN +I GYA+ Y ++A +K ++A G K D VTFVA+L+ CSH+GLV ++ +NS
Sbjct: 617 QCWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDYVTFVALLSACSHAGLVDKGIDYYNS 676
Query: 115 MEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSNVR 150
M V P C+ MP + ++W L+SS + H N+
Sbjct: 677 MASSFGVSPGIKHCVCIVDLLGRLGRFAEAERFIEEMPVLPNDLIWRSLLSSSRTHKNLE 736
Query: 151 LAKKAA 156
+ +KAA
Sbjct: 737 IGRKAA 742
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 17/94 (18%)
Query: 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAE 66
GR + I++ G+ +D +V ++ I +Y CG V+WN +I A+
Sbjct: 468 GRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQ 527
Query: 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ E+A+ L+ D+ +G K D V L+ C+
Sbjct: 528 LGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCA 561
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F++ L +C+ +L G+ + +++ ++ VG++ I +Y C
Sbjct: 345 PNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKV 404
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95
V++N +I GYA E +A+ ++ I ++G+K + +T + I
Sbjct: 405 FQSMPTHDVVSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINI 454
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 19/116 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAEN 67
F TV+S C L + G Q+ + ++ G N + V ++ I ++ N G
Sbjct: 148 FATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVANSLITMFGNLG------------- 194
Query: 68 EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP 123
V+ A L+ + +HD ++ A+++ SH G+ +F+ M H H ++P
Sbjct: 195 -RVQDAEKLFDRM----EEHDTISRNAMISMYSHQGICSKCFLVFSDMRH-HGLRP 244
>gi|357117625|ref|XP_003560564.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g16470-like [Brachypodium distachyon]
Length = 435
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 43/199 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCGVT--- 56
+ P QF F++VL +CA+L++L G ++ +VK D G ++F SA +++Y C T
Sbjct: 132 LRPDQFTFSSVLCACARLAALQHGWRVHGVMVKSDVVGGNVFANSALVDMYLKCSSTEDA 191
Query: 57 --------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
W +I G+ ++ +V +A++L+ + G + + VTF+A+L+ C+H
Sbjct: 192 RRAFAAAPERNVTMWTAVISGHGQHGHVGEALALFDQMTRDGFRPNDVTFLAVLSACAHG 251
Query: 103 GLVYAEVEIFNSMEHDHEVKPKC-------------------------LMPYKDDLVVWG 137
GLV + F+SM D+ + PK L ++ VVWG
Sbjct: 252 GLVDEGLRHFSSMPLDYGLTPKSEHYAAVVDMLARVGRLHDAYELVKNLPDCQEHSVVWG 311
Query: 138 DLVSSCQVHSNVRLAKKAA 156
L+ +C+ H +VRL + AA
Sbjct: 312 ALLGACRKHGDVRLVELAA 330
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +L C +G++I R++ G+ + ++ + + Y G
Sbjct: 31 VCPFSRTYALLLQECVNRRDARVGKRIHARMISTGFNCNDYMATKLLIFYAKIGELGVAR 90
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN +I G QA+ ++ + A G++ D TF ++L C+
Sbjct: 91 NLFDGMPRRGVVAWNALISGCTRGGLESQALEMFGSMRAEGLRPDQFTFSSVLCACAR 148
>gi|255559020|ref|XP_002520533.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540375|gb|EEF41946.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 547
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 42/197 (21%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP +++L +CA L+++ GR++ G DI+V SA +++Y CG
Sbjct: 298 YPNSATISSLLPACASLANVRHGRELHGYAFAIGVEEDIYVRSAIVDMYSKCGLISEARM 357
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH-DGVTFVAILTPCSHSG 103
VTWN MI GYA + Y ++AI L+ + + K D ++F A+LT CSH
Sbjct: 358 LFSKMPERHTVTWNSMIFGYANHGYCDEAIELFNQMEKTEAKKIDHLSFTAVLTACSHGR 417
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +F M +++ P+ C+ MP + DL VWG L
Sbjct: 418 LVELGQSLFLLMHEKYKIVPRLEHYACMIDLLGRAGKLSEAYDMIKTMPVEPDLFVWGAL 477
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ H + LA+ AA
Sbjct: 478 LGACRQHGEIDLAEIAA 494
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 43/199 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +VL +CA+LS+L GRQI + G ++ V A +Y CG
Sbjct: 264 VRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDAR 323
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+ WN MI YA + QA+S ++++I +G++ D +TF +L+ CSH
Sbjct: 324 NCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSH 383
Query: 102 SGLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWG 137
SGLV ++ FN M + + P+ C+ MP +WG
Sbjct: 384 SGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWG 443
Query: 138 DLVSSCQVHSNVRLAKKAA 156
L+++C+ H N+ +A+ AA
Sbjct: 444 SLLAACRKHRNLEMAETAA 462
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 68/136 (50%), Gaps = 22/136 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F VL S +L S+++G+ + I++ G D++V ++ I +Y CG
Sbjct: 135 FTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDN 194
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+WN ++ GY ++ ++ A+++++ + + V++ +++ S SGL
Sbjct: 195 MTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNI----VSWTTMISGYSQSGLAQQA 250
Query: 109 VEIFNSM-EHDHEVKP 123
+ +F+ M + D V+P
Sbjct: 251 LSLFDEMVKEDSGVRP 266
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 41/193 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++L++CA+ L LG+++ I K + V +A +++Y CG
Sbjct: 315 PDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSI 374
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN M+ G A + + E+AI L+ + G K D VT +AIL C+H+G V
Sbjct: 375 FNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFV 434
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ FNSME DH + P C+ MP + + V+WG L+
Sbjct: 435 DQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLG 494
Query: 142 SCQVHSNVRLAKK 154
+C+VH+ V LA+K
Sbjct: 495 ACRVHNAVPLAEK 507
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
VTW +I G+AE ++A +LY + A+G+K D T ++IL C+ SGL+ ++ S
Sbjct: 283 VTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHAS 342
Query: 115 MEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143
++ +++ KC + + LV D+ + C
Sbjct: 343 IK---KIRIKCSVNVSNALV---DMYAKC 365
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 43/199 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +VL +CA+LS+L GRQI + G ++ V A +Y CG
Sbjct: 301 VRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDAR 360
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+ WN MI YA + QA+S ++++I +G++ D +TF +L+ CSH
Sbjct: 361 NCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSH 420
Query: 102 SGLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWG 137
SGLV ++ FN M + + P+ C+ MP +WG
Sbjct: 421 SGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWG 480
Query: 138 DLVSSCQVHSNVRLAKKAA 156
L+++C+ H N+ +A+ AA
Sbjct: 481 SLLAACRKHRNLEMAETAA 499
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 68/136 (50%), Gaps = 22/136 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F VL S +L S+++G+ + I++ G D++V ++ I +Y CG
Sbjct: 172 FTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDN 231
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+WN ++ GY ++ ++ A+++++ + + V++ +++ S SGL
Sbjct: 232 MTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNI----VSWTTMISGYSQSGLAQQA 287
Query: 109 VEIFNSM-EHDHEVKP 123
+ +F+ M + D V+P
Sbjct: 288 LSLFDEMVKEDSGVRP 303
>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
Length = 749
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q F+ VL+SCA L SL G+Q+ + K G+ D V S I++Y CG
Sbjct: 466 PNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKV 525
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI GYA++ + A+ L++ + + TF+ +L CSH GLV
Sbjct: 526 FESLKDPDVISWTAMISGYAQHGMAKDALELFRKMELVLPNPNSATFLCLLFACSHGGLV 585
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F+ ME + + P+ C+ MP + D VW L+
Sbjct: 586 DEGLRYFHLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFIMKMPIEPDEKVWSTLLG 645
Query: 142 SCQVHSNVRLAKKAA 156
+C+VH N++LAK AA
Sbjct: 646 ACRVHGNIQLAKIAA 660
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 19/116 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +V + +L + GR I + G ++I VG+A I+++ CG
Sbjct: 261 IRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAKCGCVTESW 320
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
+ WN MI G+ + + E+A+ L+ + + +K D T+ + L
Sbjct: 321 SVFVSNFSGCGVNLPWNAMISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLN 376
Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ + + L+S A + SL +Q+ I K G + + +A ++ Y CG
Sbjct: 369 YTYCSTLNSIADMRSLEYVKQLHGMIWKSG-SIGVSLCNALMDAYAKCGELDAMRKLFDT 427
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++W ++ Y+++ E A+S++ + G + + VTF +L C+
Sbjct: 428 WEESNQISWTTLVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASCA 479
>gi|410109979|gb|AFV61069.1| pentatricopeptide repeat-containing protein 81, partial [Junellia
succulentifolia]
Length = 406
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 17/137 (12%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q+ F VL SC+ L++L LGRQI +VK G+ + +V SA I +Y CG
Sbjct: 265 QYTFAAVLRSCSDLATLQLGRQIHVLVVKSGFEGNEYVCSALIFMYSKCGIIEDARESFE 324
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
VTWN +I YA++ + A+ L+ + +K D VTFVA LT CSH GLV
Sbjct: 325 SSPKNSSVTWNSIIFAYAQHGQGKIALELFYSMTERNIKLDHVTFVAALTACSHIGLVQE 384
Query: 108 EVEIFNSMEHDHEVKPK 124
+ + SME ++ V P+
Sbjct: 385 GLNLLKSMETEYRVPPR 401
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 20/115 (17%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ ++++S+C S LG+ + ++K G + + +A I++Y
Sbjct: 162 YTLSSIISACFGDSQQSLGKSLHGLVIKKGLEHVTQISNALISMYLKSNSQKNVEDALKI 221
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN ++ G ++N E A+ L++ I + D TF A+L CS
Sbjct: 222 FEHIEVKDLVSWNTILTGLSQNGLSESALKLFQHIHLDHLVIDQYTFAAVLRSCS 276
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 18/111 (16%)
Query: 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------ 54
F +LS + S + +Q+ +I+K G ++ V +A I Y CG
Sbjct: 61 TFAPLLSLLYEAESYEVTKQLHGKIMKRGLEHENTVINATITAYAECGCIQDAKRVFDNA 120
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
VTWN M+ Y E+ E +++ +++ ++ D T +I++ C
Sbjct: 121 DGYRDLVTWNSMLAAYLEHNLEECGFNIFLEMVRQRLEVDAYTLSSIISAC 171
Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN +I GYAE + +++ I L+ + GV+ D TF +L+
Sbjct: 25 VSWNALIGGYAEMDNLQRCIELFMYMDMEGVRVDDATFAPLLS 67
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 92.4 bits (228), Expect = 5e-17, Method: Composition-based stats.
Identities = 54/196 (27%), Positives = 98/196 (50%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +VLS+C+ + +L +G ++ + +G D+ +G+A I++Y CG
Sbjct: 199 VNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSV 258
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TW+ MI G A + + A+SL+ +++ G++ + VTF+ +L C+H G
Sbjct: 259 RVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLG 318
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F+SM H V PK C+ MP++ D V+W L
Sbjct: 319 LVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRAL 378
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C+++ NV +A++A
Sbjct: 379 LGACRIYKNVEVAEEA 394
>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
Length = 673
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F +++L+ C++L++L G QI + +K G+ +D+ VG+A +++Y CG
Sbjct: 292 PDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKA 351
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI +A + + A+ L++D+ +G + + +TFV +L CSH+G+V
Sbjct: 352 FLDMSTRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMV 411
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+E F M+ ++++KP CL M + + +W L++
Sbjct: 412 DEALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIA 471
Query: 142 SCQVHSNVRLAKKAA 156
C+ H N L AA
Sbjct: 472 GCRNHGNEELGFYAA 486
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 37/183 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F T+VLS C+ + S LG Q+ + K G+ +++ + ++ + +Y CG
Sbjct: 178 VEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAK 237
Query: 55 -----------VTWNEMIHGYAE-----------NEYVEQAISLYKDIIASGVKHDGVTF 92
+TWN MI G+A+ + +A+ +Y + SG K D T
Sbjct: 238 NLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTL 297
Query: 93 VAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLA 152
+ILT CS + +I H +K L D+VV LV ++ A
Sbjct: 298 SSILTVCSRLAALEQGEQI-----HAQTIKSGFL----SDVVVGTALVDMYDKCGSIERA 348
Query: 153 KKA 155
+KA
Sbjct: 349 RKA 351
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P+ F + L++C+ L S+ LG+Q I+K +D +G+A ++Y G
Sbjct: 78 FPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVK 137
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++W +I +N + L+ +++ V+ + T ++L+ CS
Sbjct: 138 AFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCS 193
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 31 IVKDGYGNDIFVGSAPINIYCNCGV-----------------TWNEMIHGYAENEYVEQA 73
++K G + FV S +N+Y CGV W ++ GY +N E A
Sbjct: 6 VIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQPEVA 65
Query: 74 ISLYKDIIASGVKHDGVTFVAILTPCS 100
+ ++ D++ SG T L CS
Sbjct: 66 VEVFGDMLESGSFPSNFTLSIALNACS 92
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F + LS C+++++L GRQ+ + +K G D+FV SA +++Y CG
Sbjct: 388 VKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAE 447
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I GY+++ +A+ ++ ++ G D VTF+ +L+ CSH G
Sbjct: 448 VVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMG 507
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ + FNS+ + + P C+ M ++++W +
Sbjct: 508 LIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETV 567
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N+ ++AA
Sbjct: 568 LGACKMHGNIEFGERAA 584
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F ++L SC+ LS + LG+Q+ +IVK+ + FVG+A +++Y
Sbjct: 289 PNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETI 348
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
W ++ GYA++ E+A+ + + GVK + T + L+ CS
Sbjct: 349 FNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSR 404
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F ++L +CA L G+ I +++K G D + ++ +N+Y CG
Sbjct: 189 PNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKV 248
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W +I G+ Y + ++ ++A G + TF++IL CS
Sbjct: 249 FGEIPERDVVSWTALITGFVAEGY-GSGLRIFNQMLAEGFNPNMYTFISILRSCS 302
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
QF F +++S+ A L G I + K G+ +DI + +A + +Y
Sbjct: 89 NQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFF 148
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ N ++ G+ + E +Q + ++ G + + TF++IL C+ G
Sbjct: 149 KAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKG 205
>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Cucumis sativus]
Length = 649
Score = 92.4 bits (228), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 95/199 (47%), Gaps = 43/199 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F +VL +C+KL++L G+QI I K Y V SA IN+Y CG
Sbjct: 347 VKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELAR 406
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN MI YA + + +AISL+ ++ A G + D VT++A+L+ CSH
Sbjct: 407 KIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSH 466
Query: 102 SGLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWG 137
+GLV +++F ++ D +K + CL + K VW
Sbjct: 467 AGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWA 526
Query: 138 DLVSSCQVHSNVRLAKKAA 156
L++ C VH ++ L K A
Sbjct: 527 ALLAGCNVHGHIDLGKLTA 545
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
+WN MI G+ +N +E+A+ + + V VT+ A+++ G ++IF+ M
Sbjct: 286 SWNTMITGFIQNGKLERAVDFFYKMSNKNV----VTWTAVISGHVQDGRSEEALKIFSEM 341
Query: 116 EHDHEVKP 123
+ + VKP
Sbjct: 342 QAANNVKP 349
>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g35030, mitochondrial-like [Cucumis sativus]
Length = 649
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 95/199 (47%), Gaps = 43/199 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F +VL +C+KL++L G+QI I K Y V SA IN+Y CG
Sbjct: 347 VKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELAR 406
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN MI YA + + +AISL+ ++ A G + D VT++A+L+ CSH
Sbjct: 407 KIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSH 466
Query: 102 SGLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWG 137
+GLV +++F ++ D +K + CL + K VW
Sbjct: 467 AGLVDEGLKLFENLVRDRSIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWA 526
Query: 138 DLVSSCQVHSNVRLAKKAA 156
L++ C VH ++ L K A
Sbjct: 527 ALLAGCNVHGHIDLGKLTA 545
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
+WN MI G+ +N +E+A+ + + V VT+ A+++ G ++IF+ M
Sbjct: 286 SWNTMITGFIQNGKLERAVDFFYKMSNKNV----VTWTAVISGHVQDGRSEEALKIFSEM 341
Query: 116 EHDHEVKP 123
+ + VKP
Sbjct: 342 QAANNVKP 349
>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F ++V+SSCA+L+SL G+ + + V G +D+ V SA +++Y CG
Sbjct: 318 VRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAW 377
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GYA+N +A++LY++++ +K D +TFV +L+ C H+G
Sbjct: 378 IVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAG 437
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F S+ H + P C+ M ++ + ++W L
Sbjct: 438 LVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTL 497
Query: 140 VSSCQVHSNVRLAKKAA 156
+S C+++ +V + AA
Sbjct: 498 LSVCRINCDVNNGEMAA 514
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 30/157 (19%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
T + +VL +C++L + G+QI RIV G +FV +A N+Y CG
Sbjct: 154 TDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLF 213
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V+WN MI GY +N E L+ ++ +SG+ D VT IL+ G +
Sbjct: 214 DRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYFQCGYID 273
Query: 107 AEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143
+ F E+K K D V W ++ C
Sbjct: 274 EACKTF------REIKEK-------DKVCWTTMMVGC 297
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + TVL CA L+++ LG+QI +I+K +D+++ S +++Y CG
Sbjct: 570 VIPDNFTYATVLDICANLATVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSR 629
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW+ MI YA + E AI L++++ VK + F+++L C+H G
Sbjct: 630 IMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMG 689
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
V + F M + + P+ C+ MP++ D V+W L
Sbjct: 690 FVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTL 749
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C++ NV +A+KAA
Sbjct: 750 LGICRLQGNVEVAEKAA 766
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 17/120 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F +V+ +CA +L G ++ R++K G G D FVGSA I++YC CG
Sbjct: 471 PDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKI 530
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I G++ + E A+S + ++ GV D T+ +L C++ V
Sbjct: 531 HERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATV 590
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV-------- 55
+Q F + SCA LS+ LG Q+ +K +G D VG+A +++Y C
Sbjct: 270 SQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVF 329
Query: 56 ---------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ N +I GYA + V +A+ +++ + S + D ++ LT CS
Sbjct: 330 NTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACS 383
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------------- 53
F VL +C + LG Q+ ++ G+ +D+ G+A +++Y C
Sbjct: 173 FAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMP 232
Query: 54 ---GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W+ +I GY N+ + + LYK ++ G+ TF + C+
Sbjct: 233 ERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCA 282
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+ + L++C+ + G Q+ VK G +I V + +++Y CG
Sbjct: 372 EISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFD 431
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I + +NE+VE+ ++L+ ++ S ++ D TF +++ C+
Sbjct: 432 DMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACA 484
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 27/140 (19%)
Query: 3 PTQ-FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------- 53
PT+ F+ + C+ L ++ G+Q +I G+ +FV + + YC C
Sbjct: 35 PTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFN 94
Query: 54 ---------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
++WN MI GYA +E A L+ S + D V++ ++L+ +G
Sbjct: 95 VFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFD----SMPERDVVSWNSMLSCYLQNGF 150
Query: 105 VYAEVEIFNSM-----EHDH 119
+EIF M +HD+
Sbjct: 151 HRKSIEIFTKMRLLEIQHDY 170
>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
Length = 605
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++VL C+ LS+L GRQ+ +K G I VG++ +++YC CG
Sbjct: 229 VQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDAC 288
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ +AI L++ + GV D +T +A+LT C H+G
Sbjct: 289 KLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTG 348
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L ++ F +M+ + ++P+ C+ MP++ +G L
Sbjct: 349 LCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTL 408
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+V+ N+ A+ AA
Sbjct: 409 LTACRVYKNLEFAEFAA 425
>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Glycine max]
Length = 611
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 93/190 (48%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
++V+ +CA L+ LG+Q+ ++ GY + +F+ +A I++Y C
Sbjct: 242 LSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMC 301
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+W +I G A++ E+A++LY +++ +GVK + VTFV ++ CSH+GLV
Sbjct: 302 RKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRT 361
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
+F +M DH + P CL MP D W L+SSC+ H
Sbjct: 362 LFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRH 421
Query: 147 SNVRLAKKAA 156
N ++A + A
Sbjct: 422 GNTQMAVRIA 431
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 23/136 (16%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFL--GRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
+P F F +++ +CA L L + G+Q+ R + +D V S+ I++Y G
Sbjct: 101 HPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYG 160
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++W MI GYA + +A L++ + + A+++ S
Sbjct: 161 RAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNL----FAWTALISGLVQS 216
Query: 103 GLVYAEVEIFNSMEHD 118
G +F M H+
Sbjct: 217 GNGVDAFHLFVEMRHE 232
>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 96/199 (48%), Gaps = 45/199 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG--YGNDIFVGSAPINIYCNCG---- 54
++P V+ +C+ L+S L I+ I+ G Y + V +A I++Y CG
Sbjct: 205 IFPDAITLLGVIRACSTLASFQLA-HIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTY 263
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+TW+ MI GY + + +A++L+ + AS VK D +TFV+IL+ CSH
Sbjct: 264 ARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQMKAS-VKPDHITFVSILSACSH 322
Query: 102 SGLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWG 137
SGLV E FNSM D V P+ C+ MP + + VWG
Sbjct: 323 SGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWG 382
Query: 138 DLVSSCQVHSNVRLAKKAA 156
L+ +C++H NV LA+ A
Sbjct: 383 ALLGACRIHLNVDLAEMVA 401
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 63/142 (44%), Gaps = 21/142 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
+ P F F ++ +C+ L G +I +VK GY + +F+ ++ I +Y C
Sbjct: 6 IQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSR 65
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVK-HDGVTFVAILTPCSHS 102
V+W+ +I +++ ++ SL++ +++ G + G A+ SH
Sbjct: 66 QVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMACVRSHE 125
Query: 103 GL--VYAEVEIFNSMEHDHEVK 122
VY V + N ++ D V+
Sbjct: 126 EADDVY-RVVVENGLDFDQSVQ 146
>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+ F+ VL SC+ L++L LG+QI VK G+ ++ FV S+ I +Y CG
Sbjct: 405 HYAFSAVLRSCSDLATLQLGQQIHVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFE 464
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
+TWN ++ YA++ + A+ L+ + VK D +TFVA LT CSH GLV
Sbjct: 465 KTAKDSSITWNSIMFAYAQHGQGDVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQ 524
Query: 108 EVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSC 143
+ SM D+ + P+ C MP+ D +VW L+ +C
Sbjct: 525 GRYLLKSMASDYGISPRMEHYACAVDLFGRAGYLDEAKALIESMPFDPDAMVWKTLLGAC 584
Query: 144 QVHSNVRLAKKAA 156
+ ++ LA + A
Sbjct: 585 RACGDIELAAQVA 597
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 17/114 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
+ P + F ++L A L +G+Q+ + IVK GY ++ GSA +++Y C
Sbjct: 98 LMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAGSALLDMYAKCERVRDAF 157
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN +I G+ + A L + + GV+ D TF +LT
Sbjct: 158 MVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVRLDDGTFSPLLT 211
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------------VTWNEMIHGY 64
L Q+ +I+K G D V +A I Y CG VTWN M+ +
Sbjct: 221 LTMQLHCKIIKHGVQFDNTVCNATITSYSQCGSLEDAERVFDGAVGSRDLVTWNSMLAAF 280
Query: 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++ E A L+ D+ G + D T+ I++ CSH
Sbjct: 281 LAHDRKETAFKLFLDMQQFGFEPDIYTYTTIISACSH 317
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 16 AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAIS 75
+ + ++ IL+R + G F + + VTWN MI GY + + A
Sbjct: 29 GRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNSGSLGSAWE 88
Query: 76 LYKDIIASGVKHDGVTFVAIL 96
LYK + + G+ D TF +IL
Sbjct: 89 LYKSMKSFGLMPDAYTFGSIL 109
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 22/117 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +TT++S+C+ + G+ + ++K G + + +A I +Y
Sbjct: 303 PDIYTYTTIISACSHKDN---GKSLHGLVIKRGLEQLVPICNAVIAMYLESSSNSMEDAL 359
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN ++ G+++ + E A+ L+ + + V D F A+L CS
Sbjct: 360 NVFHSMESKDRVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCS 416
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT+ ++LS CA +L LG+ + + I K+ D + +A +++Y CG
Sbjct: 395 VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAG 454
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN +I G+A + Y E+A+ ++ ++ GVK + +TF+ +L CSH+G
Sbjct: 455 RLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAG 514
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV ++F M H + P+ C+ MP K + +VWG L
Sbjct: 515 LVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGAL 574
Query: 140 VSSCQVHSNVRLAKKAA 156
V++C++H N +L + AA
Sbjct: 575 VAACRLHKNPQLGELAA 591
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P + +++ C +L LG+Q+ I+++G+ + + +A +++Y C
Sbjct: 294 IFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNAR 353
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ W M+ YA+ ++QA +L+ + SGV+ VT V++L+ C+ +G
Sbjct: 354 ALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAG 413
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F +VL +C ++S LG++I ++K G D+FVG+A + +Y C
Sbjct: 95 FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V+W+ MI + N+ + A+ L +++ V+ V V+++
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMV 202
>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
Length = 668
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 97/187 (51%), Gaps = 41/187 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ VL +CA ++ G++I ++V+ G ++++VG++ +++Y CG
Sbjct: 299 LSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIK 358
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
++W+ MI GY + Y ++A+ ++ D+ SG+K + +TF+ +L CSH+GL+
Sbjct: 359 GKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRY 418
Query: 111 IFNSMEHDHEVKP---------------KCL---------MPYKDDLVVWGDLVSSCQVH 146
+N+M+ + ++P CL M K D +WG L+S+C+++
Sbjct: 419 WYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIY 478
Query: 147 SNVRLAK 153
NV LAK
Sbjct: 479 KNVELAK 485
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 35 GYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKD--IIASGVKHDGVTF 92
G G+D+ ++ V+WN MI YA+N +A+ LY I+ V+ + VT
Sbjct: 240 GGGHDLGAARKLFDMMDRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTL 299
Query: 93 VAILTPCSHSGLVYAEVEIFNSM 115
A+L C+H+G + I N +
Sbjct: 300 SAVLLACAHAGAIQTGKRIHNQV 322
>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Brachypodium distachyon]
Length = 884
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 90/196 (45%), Gaps = 42/196 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +L +C L +L G QI V+ GYG ++ V ++ I +Y CG
Sbjct: 507 VKPDEVTCILLLQACTSLGALDFGEQIWEYAVEHGYGCELKVRNSVITMYTRCGCVEKAY 566
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW+ MI G A N + E AIS ++++ SGV DG TF +L+ CSHSG
Sbjct: 567 QVFCHTPQKSVVTWSAMIMGLAANGFGEDAISAFEEMSRSGVVPDGQTFTGVLSACSHSG 626
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL--------------------MPYKDDLVVWGD 138
LV F+ M +++++ P C+ M D +W
Sbjct: 627 LVDEGFRFFDMMRYEYKMMPNVRHYGCIVDLMGRAGLLDEAYELVVKEMKVAPDATIWRT 686
Query: 139 LVSSCQVHSNVRLAKK 154
L+ +C++H +V L +K
Sbjct: 687 LLGACRIHGHVDLGEK 702
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 22/117 (18%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F +L C LS RQ+ +V +G+ D + ++ + Y CG
Sbjct: 412 FSLAILLKPCRTLSH---ARQLHANVVIEGHLRDSLLATSLMRSYAICGVGDCARKVFDE 468
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDII--ASGVKHDGVTFVAILTPCSHSG 103
V WN +I YA N+ + + L+ ++ S VK D VT + +L C+ G
Sbjct: 469 MVMKDTVAWNVLITCYARNKRTKDTLWLFDEMRRGESEVKPDEVTCILLLQACTSLG 525
>gi|302811424|ref|XP_002987401.1| hypothetical protein SELMODRAFT_126075 [Selaginella moellendorffii]
gi|300144807|gb|EFJ11488.1| hypothetical protein SELMODRAFT_126075 [Selaginella moellendorffii]
Length = 275
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TVLSSCA S++ GR + ++G +D+ V + ++ Y CG
Sbjct: 59 PDTVTLVTVLSSCAAGSAIAKGRAVHRFAAENGLMSDVAVANGVVDFYGKCGCLLEARAV 118
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN ++ GYA++ Y + + + ++ G + +TF+++L CSH GLV
Sbjct: 119 LDEMAKLDEVTWNSLLAGYAQHGYGVETLEAFTEMQHRGYSANRITFMSVLHACSHVGLV 178
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+ F+SM D+ +P C+ MP+K +L+ W L+
Sbjct: 179 AEGCKYFSSMIGDYGFQPIEEHCGCMIDLLGRAGHLSEAKTLLARMPFKPNLIAWMSLLG 238
Query: 142 SCQVHSNVRLAKKAA 156
SC+VH N+ L + AA
Sbjct: 239 SCKVHGNLELGRDAA 253
>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 819
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F F +++ + L+S+F G+Q I+K G ND V +A I++Y CG
Sbjct: 522 PNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRML 581
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ WN MI YA++ + E+A+ +++ + + V+ + VTFV +L+ C+H+G V
Sbjct: 582 FESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFV 641
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVS 141
+ FNSM+ +++++P MP K VW L+S
Sbjct: 642 GEGLNHFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAAVWRSLLS 701
Query: 142 SCQVHSNVRLAKKAA 156
+C + N + + AA
Sbjct: 702 ACHLFGNAEIGRYAA 716
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ F ++L + ++ L +QI I+K G D++ SA I++Y C
Sbjct: 421 PSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTV 480
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN MI G+A+NE E+AI L+ ++ SG+ + TFVA++T S
Sbjct: 481 FNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVAS 535
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 22/139 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F + +S+C+ L L GRQI + D V + I++YC C
Sbjct: 217 VRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAAR 276
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY +N + +AI+++ ++ +G + DG +IL C
Sbjct: 277 KLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLA 336
Query: 104 LVYAEVEIFNSMEHDHEVK 122
++ +I H H +K
Sbjct: 337 AIWQGRQI-----HAHVIK 350
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P F T++L+SC L++++ GRQI ++K D +V +A I++Y C
Sbjct: 320 PDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAV 379
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+++N MI GY++N + +A+++++ + ++ +TFV++L
Sbjct: 380 FDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLL 430
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F +VL +C + ++ LG Q+ VK +++VG+A IN+Y G
Sbjct: 118 PNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLV 177
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN +I GYA+ A+ L+ + GV+ D + ++ CS G +
Sbjct: 178 FHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSACSALGFL 237
Query: 106 YAEVEI 111
+I
Sbjct: 238 EGGRQI 243
>gi|356527575|ref|XP_003532384.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like [Glycine max]
Length = 577
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +VLS+CA+L L G + I ++ D ++ + +++Y CG
Sbjct: 237 VKPDNIALVSVLSACAQLGELEQGSIVHDYIKRNRIRVDSYLATGLVDLYAKCGCVETAR 296
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN M+ G+A + + + +++ GVK DGVT + +L CSH+G
Sbjct: 297 DVFESCMEKYVFTWNAMLVGFAIHGEGSMVLEYFSRMVSEGVKPDGVTLLGVLVGCSHAG 356
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV IF+ ME+ + VK + C+ MP D+ WG L
Sbjct: 357 LVLEARRIFDEMENVYGVKREGKHYGCMADMLARAGLIEEGVEMVKAMPSGGDVFAWGGL 416
Query: 140 VSSCQVHSNVRLAKKAA 156
+ C++H NV +AKKAA
Sbjct: 417 LGGCRIHGNVEVAKKAA 433
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI GY+ + QAI L+ +++ VK D + V++L+ C+ G
Sbjct: 207 ISWGTMIAGYSHLKLCNQAIELFNEMMRLEVKPDNIALVSVLSACAQLG 255
>gi|297847764|ref|XP_002891763.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
lyrata]
gi|297337605|gb|EFH68022.1| hypothetical protein ARALYDRAFT_314676 [Arabidopsis lyrata subsp.
lyrata]
Length = 828
Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F++VLS+ A L+ L G QI R+VK ND+ V ++ +++YC CG
Sbjct: 434 VCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNMANDLSVQNSLVSMYCKCGNTNDAY 493
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N MI G++ N + ++A+ L+ + ++G + +GVTF+A+L+ C H G
Sbjct: 494 KIFSCISEPNIVSYNTMISGFSYNGFGKEAVKLFSMLESTGKEPNGVTFLALLSACVHVG 553
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
V + F SM+ + ++P C+ MP + VWG L
Sbjct: 554 YVDLGWKYFKSMKFSYGIEPGPDHYACMVDLFGRSGLLDEAYNLISTMPCEPHSGVWGSL 613
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+ + H V LA+ AA
Sbjct: 614 LSASKTHLRVDLAELAA 630
>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
Length = 799
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F TVL +CA L+++ LG+QI +I+K +D ++ S +++Y CG
Sbjct: 487 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 546
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI GYA + +A+ +++ + V + TFVA+L CSH GL
Sbjct: 547 FEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLF 606
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F+ M ++++P+ C+ MP++ D V+W L+S
Sbjct: 607 DDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLS 666
Query: 142 SCQVHSNVRLAKKAA 156
C++ +V +A+ AA
Sbjct: 667 ICKIRQDVEIAELAA 681
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 39 DIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQAISLYKDII 81
D FV S +++YC CG V+WN ++ G++ N+ E A + +++
Sbjct: 422 DAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEAAQKFFSEML 481
Query: 82 ASGVKHDGVTFVAILTPCSH 101
G+K D TF +L C++
Sbjct: 482 DMGLKPDHFTFATVLDTCAN 501
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 26/172 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F +L SC+ L L LG Q+ VK G D+ GSA +++Y C
Sbjct: 145 VSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDAL 204
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W I G +NE + + L+ ++ G+ ++ + C+
Sbjct: 205 CFFYGMPERNWVSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMS 264
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155
+ ++ H H +K K + D VV +V +++ A++A
Sbjct: 265 CLNTGRQL-----HAHAIKNK----FSSDRVVGTAIVDVYAKANSLTDARRA 307
Score = 38.9 bits (89), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN ++ GY + ++++ L+ ++ GV D TF +L CS
Sbjct: 115 VSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCS 160
>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
Length = 1215
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 41/186 (22%)
Query: 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT--------------- 56
LSSCA L+SL G Q+ +K G +D +V +A +++Y CG
Sbjct: 859 LSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQ 918
Query: 57 --WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
WN +I GYA+ Y ++A +K ++A+G K D VTFVA+L+ CSH+GLV ++ +NS
Sbjct: 919 QCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNS 978
Query: 115 MEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSNVR 150
M V P C+ MP + ++W L+SS + H N+
Sbjct: 979 MASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLE 1038
Query: 151 LAKKAA 156
+ +K A
Sbjct: 1039 IGRKTA 1044
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F TV+S C L + G Q+ ++++ G N + V ++ I ++ N G
Sbjct: 450 FATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRME 509
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++WN MI Y+ + ++ D+ G++ D T ++++ C+ S
Sbjct: 510 EHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASS 561
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 17/94 (18%)
Query: 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAE 66
GR + I++ G+ +D +V ++ I +Y CG V+WN +I +
Sbjct: 770 GRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQ 829
Query: 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ E+A+ L+ D+ +G K D V L+ C+
Sbjct: 830 LGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCA 863
Score = 38.9 bits (89), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F++ L +C+ +L G+ + +++ ++ VG++ I +Y C
Sbjct: 647 PNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKV 706
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95
V++N +I GYA E +A+ ++ + ++G+K + +T + I
Sbjct: 707 FQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI 756
>gi|225436126|ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 313
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ VL SC+ LS+L LGRQ+ +V +G +D+ +A I++Y CG
Sbjct: 109 YTLPAVLKSCSGLSALRLGRQVHCAVVANGLASDLATINALISMYSKCGDLAAARKVFDR 168
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
VTW+ M+ GY + + L+ ++ +G DGVTF A+L CSH G +
Sbjct: 169 MTERNLVTWSAMMAGYGVHGVFGEVFELFDGMVDAGEVPDGVTFTAVLAACSHGGFMENG 228
Query: 109 VEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQ 144
+ F ME V+P+ C+ M + D +WG L++SC+
Sbjct: 229 RKYFGMMEERFGVRPRLEHYTCMVDMLGRAGRVEEAEELIEGMEVEPDEALWGALLASCK 288
Query: 145 VHSNVRLAKKAA 156
+H V +A++ A
Sbjct: 289 IHGKVEVAERVA 300
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F T+L SCA L +QI RI+ G F+ + + Y +C
Sbjct: 10 FATLLDSCASKRDLQKLKQIHARIITVGISRHDFIRAKLVASYASCAQMSQASYIFSLTN 69
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+N +I GY+ Q++S++ ++ + D T A+L CS
Sbjct: 70 RRPTFLYNSLIRGYSSLFLFSQSLSIFCQMLFAHKPIDCYTLPAVLKSCS 119
>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 701
Score = 92.0 bits (227), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 98/197 (49%), Gaps = 44/197 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F++V+ +CA L++L LGRQ+ IV+ G+ ++ F+ S+ +++Y CG
Sbjct: 324 VKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMAR 383
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W +I G A + + A+SL+++++ GV+ V F+A+LT CSH+G
Sbjct: 384 YVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAG 443
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYK--DDLV------------------------VWG 137
LV FNSME D + P L Y DL+ VW
Sbjct: 444 LVDEGWRYFNSMERDFGIAPG-LEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWS 502
Query: 138 DLVSSCQVHSNVRLAKK 154
L+++C+ H +V LA+K
Sbjct: 503 ILLAACRAHKSVELAEK 519
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P F +++L A+ + G++I V++G+ D+F+GS+ I++Y C
Sbjct: 225 PDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRA 284
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++WN +I G +N ++ + ++ ++ VK V+F +++ C+H
Sbjct: 285 FYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAH 340
>gi|413932453|gb|AFW67004.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 913
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++ LSSCA L+ L GRQ+ +K G + G+A IN+Y CG
Sbjct: 430 PNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLA 489
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +IHG A++ A+ + ++ +S + D TF+++L C+H+GLV
Sbjct: 490 FDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLV 549
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F M + + P C+ MP++ D+++W L++
Sbjct: 550 KEGETFFRQMTDRYGLTPTPSHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLA 609
Query: 142 SCQVHSNVRLAKKAA 156
SC++H N+ + K AA
Sbjct: 610 SCKLHRNLDIGKLAA 624
Score = 46.2 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 20/123 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F F+ LS+C S+ LGRQI +K DI V +A +++Y G
Sbjct: 330 VQPNEFAFSIALSACG---SVCLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELE 386
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W I +N + E+A++L + + G + F + L+ C+
Sbjct: 387 AVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLA 446
Query: 104 LVY 106
L++
Sbjct: 447 LLH 449
>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
Length = 863
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F TVL +CA L+++ LG+QI +I+K +D ++ S +++Y CG
Sbjct: 551 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 610
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI GYA + +A+ +++ + V + TFVA+L CSH GL
Sbjct: 611 FEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLF 670
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F+ M ++++P+ C+ MP++ D V+W L+S
Sbjct: 671 DDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLS 730
Query: 142 SCQVHSNVRLAKKAA 156
C++ +V +A+ AA
Sbjct: 731 ICKIRQDVEIAELAA 745
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F + +VL +CA L SL G + +++K G G+D FV S +++YC CG
Sbjct: 450 PDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKL 509
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN ++ G++ N+ E+A + +++ G+K D TF +L C++
Sbjct: 510 HDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCAN 565
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------------- 53
+ V S+CA+ F G+Q+ +K G+ DI V +A +++Y C
Sbjct: 354 LSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMK 413
Query: 54 ---GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I +N + + I + +++ G+K D T+ ++L C+
Sbjct: 414 QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACA 463
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 26/172 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F +L SC+ L L LG Q+ VK G D+ GSA +++Y C
Sbjct: 145 VSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDAL 204
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W I G +NE + + L+ ++ G+ ++ + C+
Sbjct: 205 CFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMS 264
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155
+ ++ H H +K K + D VV +V +++ A++A
Sbjct: 265 CLNTGRQL-----HAHAIKNK----FSSDRVVGTAIVDVYAKANSLTDARRA 307
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN ++ GY + ++++ L+ ++ GV D TF +L CS
Sbjct: 115 VSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCS 160
>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 905
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F TVL +CA L+++ LG+QI +I+K +D ++ S +++Y CG
Sbjct: 593 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 652
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI GYA + +A+ +++ + V + TFVA+L CSH GL
Sbjct: 653 FEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLF 712
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F+ M ++++P+ C+ MP++ D V+W L+S
Sbjct: 713 DDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLS 772
Query: 142 SCQVHSNVRLAKKAA 156
C++ +V +A+ AA
Sbjct: 773 ICKIRQDVEIAELAA 787
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F + +VL +CA L SL G + +++K G G+D FV S +++YC CG
Sbjct: 492 PDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKL 551
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN ++ G++ N+ E+A + +++ G+K D TF +L C++
Sbjct: 552 HDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCAN 607
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------------- 53
+ V S+CA+ F G+Q+ +K G+ DI V +A +++Y C
Sbjct: 396 LSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMK 455
Query: 54 ---GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I +N + + I + +++ G+K D T+ ++L C+
Sbjct: 456 QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACA 505
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 22/141 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F +L SC+ L L LG Q+ VK G D+ GSA +++Y C
Sbjct: 187 VSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDAL 246
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W I G +NE + + L+ ++ G+ ++ + C+
Sbjct: 247 CFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMS 306
Query: 104 LVYAEVEIFNSMEHDHEVKPK 124
+ ++ H H +K K
Sbjct: 307 CLNTGRQL-----HAHAIKNK 322
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN ++ GY + ++++ L+ ++ GV D TF +L CS
Sbjct: 157 VSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCS 202
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + VLS+C +L +L GR I + I G ++ VG+A I++Y CG
Sbjct: 271 PNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLV 330
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI GYA + + + A+ L++++ +G K +TF+ IL+ C H GLV
Sbjct: 331 FDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLV 390
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F M + ++PK C+ M D V+WG L+
Sbjct: 391 EEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLG 450
Query: 142 SCQVHSNVRLAKKAA 156
C++H N++L ++ A
Sbjct: 451 CCRLHVNIKLGEEIA 465
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 52/151 (34%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F++VL SC SL G+ + + +K G G+D++V + +++Y G
Sbjct: 141 VEPNAFTFSSVLKSC----SLESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCAR 196
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V WN MI GYA++ +
Sbjct: 197 QLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNE 256
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++ L++ ++ + + VT +A+L+ C G
Sbjct: 257 SLKLFRRMLVAKAIPNEVTVLAVLSACGQLG 287
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + T+L +C L+ L G+ + VK G +D V ++ I +Y CG
Sbjct: 494 PDRVTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTV 553
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN M+ GY ++ +A+ L+K ++ V + +T A+++ CS +GLV
Sbjct: 554 FDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLV 613
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
EIF M+ D ++ P+ C+ MP + D+ VW L+
Sbjct: 614 QEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLG 673
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H+NV+LA++AA
Sbjct: 674 ACKSHNNVQLAERAA 688
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F ++L +C S L GR+I T + G D+ V +A I +Y CG
Sbjct: 153 IEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVAC 212
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W +I A++ + +A LY+ ++ +G+ + VTFV++L C+
Sbjct: 213 EVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCN 269
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 22/125 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F ++L+SC +L GR+I + I + G D+ V +A I +YC C
Sbjct: 254 ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAR 313
Query: 55 -----------VTWNEMIHGYAENEY-----VEQAISLYKDIIASGVKHDGVTFVAILTP 98
++W+ MI GYA++ Y +++ L + + GV + VTF++IL
Sbjct: 314 EIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRA 373
Query: 99 CSHSG 103
C+ G
Sbjct: 374 CTAHG 378
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 59/162 (36%), Gaps = 54/162 (33%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+P + F ++L +C +L GRQI + K G+ D + +A N+Y CG
Sbjct: 360 VFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAE 419
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V+WN MI GYA+N + +
Sbjct: 420 QVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVK 479
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPC------SHSGLVYAE 108
L + A G + D VT + IL C LV+AE
Sbjct: 480 VFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAE 521
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
V+ CAK G+ + ++ + G DI++G++ IN Y
Sbjct: 62 VIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRD 121
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTW+ MI YA N + +A ++ + + ++ + +TF++IL C++
Sbjct: 122 VVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNN 169
>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Vitis vinifera]
Length = 755
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T VL + A+ S+ +G Q+ +K G D V + I++Y CG
Sbjct: 467 PDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKI 526
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ +I GYA+ Y E+A+ L+K + VK + VTFV +LT CSH GLV
Sbjct: 527 FDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLV 586
Query: 106 YAEVEIFNSMEHDHEVKPK---------------CL---------MPYKDDLVVWGDLVS 141
+++ +ME + + P CL M + D+VVW L++
Sbjct: 587 EEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLA 646
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H NV + K+AA
Sbjct: 647 ACKTHGNVDVGKRAA 661
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 40/184 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F F +V S+C+ L GRQ+ +K G G D+F G + ++Y CG
Sbjct: 264 PNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVV 323
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN +I G+A ++AI+ + + G+ D +T ++L C+ +
Sbjct: 324 FYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSEL 383
Query: 106 YAEVEI---FNSMEHDHEVK---------PKCL-----------MPYKDDLVVWGDLVSS 142
Y +++ N M D +V KC M DLV W ++++
Sbjct: 384 YQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTA 443
Query: 143 CQVH 146
C H
Sbjct: 444 CMRH 447
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P QF F +++ +C+ L + LGRQ+ ++K +G I +A I++Y
Sbjct: 160 VMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDAL 219
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVK-HDGVTFVAILTPCS 100
++W MI G+++ Y +A+ +K+++ GV + F ++ + CS
Sbjct: 220 DVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFGSVFSACS 277
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ ++S+C+ L SL G++I ++K D+ + + +N+Y C
Sbjct: 66 YAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMP 125
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I GY++N A+ Y ++ SGV D TF +I+ CS G
Sbjct: 126 ERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLG 178
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 42/188 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++L++CA+ SL LG++I + K G V +A I+++C CG
Sbjct: 634 SILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQ 693
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I G+A + + ++A+ L+ + G D VT + +L+ C+H G V
Sbjct: 694 KDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRH 753
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F++ME D+ + P+ C+ MP++ + V+WG L+S+C++H
Sbjct: 754 FSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHK 813
Query: 148 NVRLAKKA 155
NV A+ A
Sbjct: 814 NVEYAEIA 821
>gi|297741566|emb|CBI32698.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T VL + A+ S+ +G Q+ +K G D V + I++Y CG
Sbjct: 205 PDYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDTSVTNGLIDLYAKCGSLKTAHKI 264
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ +I GYA+ Y E+A+ L+K + VK + VTFV +LT CSH GLV
Sbjct: 265 FDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDVKPNHVTFVGVLTACSHVGLV 324
Query: 106 YAEVEIFNSMEHDHEVKPK---------------CL---------MPYKDDLVVWGDLVS 141
+++ +ME + + P CL M + D+VVW L++
Sbjct: 325 EEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAEGFIHQMAFDPDIVVWKTLLA 384
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H NV + K+AA
Sbjct: 385 ACKTHGNVDVGKRAA 399
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 35/165 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P QF F +++ +C+ L + LGRQ+ ++K +G I +A I++Y
Sbjct: 37 VMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYTKSNLIIDAL 96
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI G+++ Y +A+ +K+++ G + D V + AI+ +G
Sbjct: 97 DVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQG-RPDLVAWNAII-----AG 150
Query: 104 LVYAEVE--IFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVH 146
Y E+ IF E M DLV W ++++C H
Sbjct: 151 FAYGELRDAIFFFEE----------MRCNADLVSWNAILTACMRH 185
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I GY++N A+ Y ++ SGV D TF +I+ CS G
Sbjct: 7 VSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLG 55
>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
Length = 863
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F TVL +CA L+++ LG+QI +I+K +D ++ S +++Y CG
Sbjct: 551 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 610
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI GYA + +A+ +++ + V + TFVA+L CSH GL
Sbjct: 611 FEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLF 670
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F+ M ++++P+ C+ MP++ D V+W L+S
Sbjct: 671 DDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLS 730
Query: 142 SCQVHSNVRLAKKAA 156
C++ +V +A+ AA
Sbjct: 731 ICKIRQDVEIAELAA 745
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F + +VL +CA L SL G + +++K G G+D FV S +++YC CG
Sbjct: 450 PDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKL 509
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN ++ G++ N+ E+A + +++ G+K D TF +L C++
Sbjct: 510 HDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCAN 565
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------------- 53
+ V S+CA+ F G+Q+ +K G+ DI V +A +++Y C
Sbjct: 354 LSGVFSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMK 413
Query: 54 ---GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I +N + + I + +++ G+K D T+ ++L C+
Sbjct: 414 QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACA 463
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 57/141 (40%), Gaps = 22/141 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F +L SC+ L L LG Q+ VK G D+ GSA +++Y C
Sbjct: 145 VSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDAL 204
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W I G +NE + + L+ ++ G+ ++ + C+
Sbjct: 205 CFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMS 264
Query: 104 LVYAEVEIFNSMEHDHEVKPK 124
+ ++ H H +K K
Sbjct: 265 CLNTGRQL-----HAHAIKNK 280
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN ++ GY + ++++ L+ ++ GV D TF +L CS
Sbjct: 115 VSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCS 160
>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 1000
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 41/186 (22%)
Query: 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT--------------- 56
LSSCA L+SL G Q+ +K G +D +V +A +++Y CG
Sbjct: 557 LSSCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAMDMYGKCGKMDEMLQVVPDQAIRPQ 616
Query: 57 --WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
WN +I GYA+ Y ++A +K ++A+G K D VTFVA+L+ CSH+GLV ++ +NS
Sbjct: 617 QCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYVTFVALLSACSHAGLVDKGIDYYNS 676
Query: 115 MEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSNVR 150
M V P C+ MP + ++W L+SS + H N+
Sbjct: 677 MASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEEMPVLPNDLIWRSLLSSSRTHKNLE 736
Query: 151 LAKKAA 156
+ +K A
Sbjct: 737 IGRKTA 742
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F TV+S C L + G Q+ ++++ G N + V ++ I ++ N G
Sbjct: 148 FATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVHDAEKLFDRME 207
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++WN MI Y+ + ++ D+ G++ D T ++++ C+ S
Sbjct: 208 EHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCASS 259
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 17/94 (18%)
Query: 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAE 66
GR + I++ G+ +D +V ++ I +Y CG V+WN +I +
Sbjct: 468 GRPLHAYIIRTGFLSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQ 527
Query: 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ E+A+ L+ D+ +G K D V L+ C+
Sbjct: 528 LGHGEEALKLFIDMQHAGNKLDRVCLAECLSSCA 561
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F++ L +C+ +L G+ + +++ ++ VG++ I +Y C
Sbjct: 345 PNHLTFSSALGACSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKV 404
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95
V++N +I GYA E +A+ ++ + ++G+K + +T + I
Sbjct: 405 FQSMPTHDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI 454
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG-NDIFVGSAPINIYCNCGV---- 55
V P F ++L +CA L +L LG+ I I K G + + ++ I++Y CG
Sbjct: 361 VEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAA 420
Query: 56 -------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+WN MI G A + + A+ L++ + G + D +TFV +L+ CSH+
Sbjct: 421 KQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHA 480
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV + F+SM D+++ PK C+ M K D +WG
Sbjct: 481 GLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGS 540
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C+VH NV L + AA
Sbjct: 541 LLGACRVHGNVELGEFAA 558
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + TVLS+CA+ SL LG + + I G G+++ + +A I++Y CG
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKAR 319
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GY+ ++A++L++ + S V+ + VTFV+IL C++ G
Sbjct: 320 DLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLG 379
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 48/151 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F +L SCAK+ + G+QI ++K G +D FV ++ IN+Y G
Sbjct: 128 VEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAE 187
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V+WN MI GYA++ E+
Sbjct: 188 LVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEE 247
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
A++ ++++ + V + T V +L+ C+ SG
Sbjct: 248 ALAFFQEMKRANVAPNESTMVTVLSACAQSG 278
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 54/138 (39%), Gaps = 33/138 (23%)
Query: 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---------- 56
P T+LS+C +L +QI ++I+K G N F S I C ++
Sbjct: 34 PSLTLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEF---CAISPFGNLSYALL 87
Query: 57 ------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
WN MI G + + AI Y ++ GV+ + TF +L C+ G
Sbjct: 88 LFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGA 147
Query: 105 VYAEVEIFNSMEHDHEVK 122
+I H H +K
Sbjct: 148 TQEGKQI-----HGHVLK 160
>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
Length = 584
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 89/198 (44%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F LS+CA+ +L LGR++ RIV D +F+GSA +N+Y CG
Sbjct: 206 VVPDSATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKAR 265
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW MI GY + + +AI L+ + G + VTFVA+L C+H+G
Sbjct: 266 DWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVLAACAHAG 325
Query: 104 LVYAEVEIFNSMEHDHEVKPK----CLM---------------------PYKDDLVVWGD 138
LV F+SM+ + + P+ C M P + VW
Sbjct: 326 LVNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFICDSIPEEPGPEVWTA 385
Query: 139 LVSSCQVHSNVRLAKKAA 156
++ +C++H N L + A
Sbjct: 386 MLGACKMHKNFNLGVEVA 403
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 17/103 (16%)
Query: 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEM 60
LS+L G + V G+G+D FV +A + +Y CG V WN M
Sbjct: 122 LSALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAM 181
Query: 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
I GY +N E+AI +Y+++ + V D TFVA L+ C+ +G
Sbjct: 182 ISGYEQNGLAERAIEVYREMQVAQVVPDSATFVATLSACAQAG 224
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT+ ++LS CA +L LG+ + + I K+ D + +A +++Y CG
Sbjct: 355 VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAG 414
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN +I G+A + Y E+A+ ++ ++ GVK + +TF+ +L CSH+G
Sbjct: 415 RLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAG 474
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV ++F M H + P+ C+ MP K + +VWG L
Sbjct: 475 LVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGAL 534
Query: 140 VSSCQVHSNVRLAKKAA 156
V++C++H N +L + AA
Sbjct: 535 VAACRLHKNPQLGELAA 551
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F +VL +C ++S LG++I ++K G D+FVG+A + +Y C
Sbjct: 125 FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 184
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V+W+ MI + N+ + A+ L +++ V+ V V+++
Sbjct: 185 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMV 232
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
W M+ YA+ ++QA +L+ + SGV+ VT V++L+ C+ +G
Sbjct: 327 WTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAG 373
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 40/194 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P + LS+CA++ +L G++I +K G G D F+ +A +++Y CG
Sbjct: 435 PNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQ 494
Query: 56 ---------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
WN ++ GYA+ + L+K ++ S + D VTF+++L CS SG+V
Sbjct: 495 FNLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVT 554
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+E F M+ ++ + P C+ MP K D +WG L+++
Sbjct: 555 EGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNA 614
Query: 143 CQVHSNVRLAKKAA 156
C++H +V L + AA
Sbjct: 615 CRIHRHVLLGELAA 628
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F +VL SCA L GR++ +V+ + D+ V +A I +Y CG
Sbjct: 131 IRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSAR 190
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GY EN+ + + L+ + + D +T ++++ C G
Sbjct: 191 MLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLG 250
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T+V+S+C L LG Q+ + +V+ Y +I V ++ I +Y + G
Sbjct: 234 PDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESV 293
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G +N ++A+ YK + +G D VT ++L+ C+ G
Sbjct: 294 FSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLG 351
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 57/100 (57%), Gaps = 10/100 (10%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----VTWNEM 60
++ + VLSS L S+ LG +L+ V+ +G+ VG+A N++ G +WN +
Sbjct: 53 EYVWKAVLSSLVTLLSVRLGNALLSMFVR--FGD---VGNA-WNVFGRMGERDLFSWNVL 106
Query: 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ GY + + ++A+ LY I+ +G++ D TF ++L C+
Sbjct: 107 VGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCA 146
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 23/137 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +VLS+CA L L +G ++ + G+ + V ++ I++Y C
Sbjct: 335 PDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEI 394
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W +I+G N +A+ ++ +I K + VT ++ L+ C+ G +
Sbjct: 395 FHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGAL 453
Query: 106 YAEVEIFNSMEHDHEVK 122
EI H H +K
Sbjct: 454 MCGKEI-----HAHALK 465
>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 47/201 (23%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TVL CA L+++ G++I +++ +DI VGSA +++Y CG
Sbjct: 516 PNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRV 575
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASG-----VKHDGVTFVAILTPCS 100
+TWN +I + E+A+ L+K+++A K + VTF+ + CS
Sbjct: 576 FNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACS 635
Query: 101 HSGLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLV-V 135
HSGL+ + +F M+HDH V+P C+ MP + D V
Sbjct: 636 HSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGA 695
Query: 136 WGDLVSSCQVHSNVRLAKKAA 156
W L+ +C++H NV L + AA
Sbjct: 696 WSSLLGACRIHQNVELGEVAA 716
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 74/153 (48%), Gaps = 34/153 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDI----FVGSAPINIYCNCGVT--------- 56
+VL +C+ L L +G++I ++++ ND+ FVGSA +++YCNC
Sbjct: 302 SVLPACSHLERLDVGKEIHAYVLRN---NDLIENSFVGSALVDMYCNCRQVESGRRVFDH 358
Query: 57 --------WNEMIHGYAENEYVEQAISLYKDII-ASGVKHDGVTFVAILTPCSHSGLVYA 107
WN MI GYA N E+A+ L+ ++I +G+ + T +++ C H
Sbjct: 359 ILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVH------ 412
Query: 108 EVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140
E F++ E H K + +K+D V L+
Sbjct: 413 -CEAFSNKESIHGYAVK--LGFKEDRYVQNALM 442
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND-IFVGSAPINIYCNCG------- 54
P F F VL + + L L G QI VK GYG+ + V + +N+Y CG
Sbjct: 90 PDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCK 149
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+WN I E EQA+ ++ + ++ T V++ CS+ G+
Sbjct: 150 VFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGV 209
Query: 105 VYA 107
++
Sbjct: 210 MHG 212
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 4 TQFPFTTVLSSCAKLS---SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ F +V +C+ L L LG+Q+ ++ G F +A + +Y G
Sbjct: 193 SSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSK 251
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN MI +++++ +A++ ++ ++ GV+ DGVT ++L CSH
Sbjct: 252 ALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSH 309
>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 650
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 45/197 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F ++L +CA L +L LG + T I K+ ND FVG+A +++Y CG
Sbjct: 278 VKPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAK 337
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW MI G A N + E+A++++ ++I + V D +T++ +L C
Sbjct: 338 KVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC---- 393
Query: 104 LVYAEVEIFNSMEHDHEVKPK---------------CL---------MPYKDDLVVWGDL 139
+V F +M H +KP CL MP K + +VWG
Sbjct: 394 MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSP 453
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH NV+LA AA
Sbjct: 454 LGACRVHKNVQLADMAA 470
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPI--------NIYCNCGVTWNEMIH 62
VLS+C+KL L G+ I + + G +F + N+ V+W MI
Sbjct: 197 VLSACSKLKDLEWGKHIF-KYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMID 255
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
GY + A++L++++ S VK D T V+IL C+ G
Sbjct: 256 GYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLG 296
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 17/81 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F F L + +L G+++L VK G+ +++FV A I+++ CG
Sbjct: 103 IKPDRFTFPFSLKGFTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAH 162
Query: 55 -----------VTWNEMIHGY 64
VTWN M+ GY
Sbjct: 163 KVFDMGDACEVVTWNIMLSGY 183
>gi|115452179|ref|NP_001049690.1| Os03g0271300 [Oryza sativa Japonica Group]
gi|113548161|dbj|BAF11604.1| Os03g0271300, partial [Oryza sativa Japonica Group]
Length = 484
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P+ +T+L + A ++ + G+++ V G ++ V SA +++Y CG
Sbjct: 233 VLPSSATISTILPAFANVADVKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEAR 292
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI G A + + ++A+ L+ ++ G K D +TF A+LT CS+ G
Sbjct: 293 RLFDKMPQRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGG 352
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V ++ +M+ ++ V+P+ C+ MP + D VWG L
Sbjct: 353 MVEVGKILYRAMQVEYGVEPRLEHYACMVHLLGRAGRLDEAYGFIRAMPLEPDRFVWGAL 412
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ H N+ LA+ AA
Sbjct: 413 LGACRSHGNIELAELAA 429
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 30/159 (18%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIV-KDGYGNDIFVGSAPINIYCNCG------ 54
+P P T L +CA L+ + GR I ++ + +D +A +++Y CG
Sbjct: 61 WPGAVP--TALRACAHLADVASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASAR 118
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V WN ++ YA + E A++L + G+ D VT+ +++ + +
Sbjct: 119 KVFDEMASRGDPVVWNALLACYARHGLPEHALALAVKMRGIGLCPDLVTWNIVVSGFALA 178
Query: 103 GLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
G ++ +M+ D ++ D+V W VS
Sbjct: 179 GDDLMAGDLVGAMKDDG---------FQPDVVTWTSRVS 208
>gi|108707417|gb|ABF95212.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 469
Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P+ +T+L + A ++ + G+++ V G ++ V SA +++Y CG
Sbjct: 218 VLPSSATISTILPAFANVADVKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEAR 277
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI G A + + ++A+ L+ ++ G K D +TF A+LT CS+ G
Sbjct: 278 RLFDKMPQRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGG 337
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V ++ +M+ ++ V+P+ C+ MP + D VWG L
Sbjct: 338 MVEVGKILYRAMQVEYGVEPRLEHYACMVHLLGRAGRLDEAYGFIRAMPLEPDRFVWGAL 397
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ H N+ LA+ AA
Sbjct: 398 LGACRSHGNIELAELAA 414
Score = 37.7 bits (86), Expect = 1.6, Method: Composition-based stats.
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 30/159 (18%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIV-KDGYGNDIFVGSAPINIYCNCG------ 54
+P P T L +CA L+ + GR I ++ + +D +A +++Y CG
Sbjct: 46 WPGAVP--TALRACAHLADVASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASAR 103
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V WN ++ YA + E A++L + G+ D VT+ +++ + +
Sbjct: 104 KVFDEMASRGDPVVWNALLACYARHGLPEHALALAVKMRGIGLCPDLVTWNIVVSGFALA 163
Query: 103 GLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
G ++ +M+ D ++ D+V W VS
Sbjct: 164 GDDLMAGDLVGAMKDDG---------FQPDVVTWTSRVS 193
>gi|18873857|gb|AAL79803.1|AC079874_26 putative pentatricopeptide repeat domain containing protein [Oryza
sativa Japonica Group]
Length = 391
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F TVL +CA L+++ LG+QI +I+K +D ++ S +++Y CG
Sbjct: 79 PDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLV 138
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI GYA + +A+ +++ + V + TFVA+L CSH GL
Sbjct: 139 FEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLF 198
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F+ M ++++P+ C+ MP++ D V+W L+S
Sbjct: 199 DDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLS 258
Query: 142 SCQVHSNVRLAKKAA 156
C++ +V +A+ AA
Sbjct: 259 ICKIRQDVEIAELAA 273
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 17/89 (19%)
Query: 30 RIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQ 72
+++K G G+D FV S +++YC CG V+WN ++ G++ N+ E+
Sbjct: 5 KVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEE 64
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSH 101
A + +++ G+K D TF +L C++
Sbjct: 65 AQKFFSEMLDMGLKPDHFTFATVLDTCAN 93
>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Vitis vinifera]
Length = 610
Score = 92.0 bits (227), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F ++++ + A L+ L LG+QI ++ GY + +FV +A +++Y C
Sbjct: 239 FILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGR 298
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+W +I G A++ E+A+SLY ++++G+K + VTFV ++ CSH GLV
Sbjct: 299 MVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKG 358
Query: 109 VEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQ 144
FNSM D+ + P CL MP+K D W L+S+C
Sbjct: 359 RYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACN 418
Query: 145 VHSNVRLAKKAA 156
H N + + A
Sbjct: 419 HHRNTLIGIRVA 430
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 21/118 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F ++ +CA L ++ G+Q+ + +D V S+ +++Y CG
Sbjct: 103 PDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVV 162
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI GYA++ AI L++ + + +++ A+++ SG
Sbjct: 163 FDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNL----LSWTALISGLVQSG 216
>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
Length = 772
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 44/197 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TV+S+CA L +L G +I + + + G+ D+ + +A I++Y CG
Sbjct: 524 PNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGTARRI 583
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI GY + +QA+ L+ + +K +GVTF+AIL+ C HSGL+
Sbjct: 584 FDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSACCHSGLL 643
Query: 106 YAEVEIFNSME----------------------HDHEVKPKCL-MPYKDDLVVWGDLVSS 142
++F M H E + L MP + D +WG L+S+
Sbjct: 644 EEGRQLFTRMGKYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPVEPDGGIWGTLLSA 703
Query: 143 CQVHSN----VRLAKKA 155
C++H + +R+AKKA
Sbjct: 704 CKLHDDFEMGLRIAKKA 720
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 18/112 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +SSC++L L LGR +K D V + I +Y CG
Sbjct: 427 LVSAISSCSRLVELRLGRSAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAK 486
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTWN +I YA + A+SLY ++ G+ + T + +++ C++
Sbjct: 487 LKGDVVTWNTLISSYAHLGHSNTAVSLYDQMLTEGLTPNSTTLITVISACAN 538
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 17/122 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + L +C L L GR + VK G G+ V SA ++Y C
Sbjct: 217 PNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISALFSMYSKCHSTEDACSL 276
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W +I Y + +A+ L+++++ SG++ D V +L+ +SG V
Sbjct: 277 FPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDDVLVSCLLSGLGNSGNV 336
Query: 106 YA 107
+
Sbjct: 337 HG 338
>gi|302799473|ref|XP_002981495.1| hypothetical protein SELMODRAFT_114873 [Selaginella moellendorffii]
gi|300150661|gb|EFJ17310.1| hypothetical protein SELMODRAFT_114873 [Selaginella moellendorffii]
Length = 605
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 37/192 (19%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + + L++C+ L LG+ I RI+ +FVG+A +N+Y CG
Sbjct: 389 VEPNEMVIVSTLAACSGAKDLALGKAIHARILSPDLRKSVFVGTALLNMYAKCGAIKQAR 448
Query: 55 ----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTP 98
VTW+ ++ GYA + + + AI LY+D+ G++ D VT+V+IL
Sbjct: 449 AVFDRMPHKDVVARDTVTWSSLVAGYAHHSHAD-AILLYRDMHLEGIQPDSVTYVSILNS 507
Query: 99 CSHSGLVYAEVEIFNSMEHDH---EVKPKC-----------LMPYKDDLVVWGDLVSSCQ 144
CSH+ L+ F SM DH +V + MP++ D+V W L+ C+
Sbjct: 508 CSHASLLAQARHFFVSMVEDHCMVDVLGRAGFVGRAEDVVRNMPFQPDVVAWNTLLGCCK 567
Query: 145 VHSNVRLAKKAA 156
VH + AA
Sbjct: 568 VHGDAWRGAVAA 579
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 51 CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
C V+WN +I GYA+ YV+ A ++ ++ K D V++ I+ + SG +
Sbjct: 326 CKDSVSWNSLIQGYAQLGYVDDARVMFDTMMP---KKDVVSWSCIIAAYAQSGHCREAIN 382
Query: 111 IFNSME 116
+F M+
Sbjct: 383 LFQRMD 388
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + FT+VL+SC+ + L G++I ++V GY D+++ SA +++Y CG
Sbjct: 346 IKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDAS 405
Query: 55 -----------VTWNEMIHG-YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V W +I G A++ +A+ + + G+K D VTF ++L+ C+H
Sbjct: 406 LVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHV 465
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
GLV + F SM D+ +KP C MP+ VWG
Sbjct: 466 GLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGA 525
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+S+C+VHS+V ++AA
Sbjct: 526 LLSACRVHSDVERGERAA 543
Score = 78.2 bits (191), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 17/134 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F ++L C ++L G+++ I++ GYG +++V ++ I +YC CG
Sbjct: 245 VAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEAR 304
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW M+ GYA+ + ++AI+L++ + G+K D +TF ++LT CS
Sbjct: 305 KLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPA 364
Query: 104 LVYAEVEIFNSMEH 117
+ I + H
Sbjct: 365 FLQEGKRIHQQLVH 378
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F +L CA+L SL GR++ I+K G + ++ + +++Y CG
Sbjct: 50 FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIR 109
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI + +A Y+ + +G K D VTFV++L ++ L+
Sbjct: 110 DRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELL 164
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F ++L++ L LG+++ IV+ G + VG++ + +Y CG
Sbjct: 146 PDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVI 205
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTW +I GYA+ V+ A+ L + + + V + +TF +IL C+
Sbjct: 206 FDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCT 260
>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P Q F +VL + + L +L G ++ +K G D++VG+ I++Y CG
Sbjct: 372 PIQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLL 431
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
WN +I G + + +A+SL+ + G+ D VTFV++L CSH+GLV
Sbjct: 432 FEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLV 491
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
FN M+ + +KP C+ MP K D +WG L+
Sbjct: 492 DQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLG 551
Query: 142 SCQVHSNVRLAKKAA 156
+C++H NV + K A+
Sbjct: 552 ACRIHGNVEMGKVAS 566
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 27/126 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG-NDIFVGSAPINIYCNC------ 53
V P ++ S+ A+ + GR + +V+ G+ DI G+A +++Y
Sbjct: 267 VSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAA 326
Query: 54 -----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV-----TFVAILT 97
V+WN +I GY +N +AI +Y + KH+G+ TFV++L
Sbjct: 327 QRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHM----QKHEGLKPIQGTFVSVLP 382
Query: 98 PCSHSG 103
SH G
Sbjct: 383 AYSHLG 388
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
++VL C L L + VK G +++FV +A I++Y G
Sbjct: 174 SSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSS 233
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN +I G+ + V A+ ++ + SGV D +T +++ + + G
Sbjct: 234 RDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCG 285
>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
gi|238013832|gb|ACR37951.1| unknown [Zea mays]
gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
Length = 745
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F +V+SSCA L+SL G Q + G + I V +A + +Y CG
Sbjct: 371 PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRL 430
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W ++ GYA+ ++ I L++ ++A VK DGVTF+ +L+ CS +G V
Sbjct: 431 FDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFV 490
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
F+SM+ DH + P C+ MP D + WG L+S
Sbjct: 491 EKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLS 550
Query: 142 SCQVHSNVRLAKKAA 156
+C++ ++ + + AA
Sbjct: 551 ACRLRGDMEIGQWAA 565
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 62/114 (54%), Gaps = 17/114 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q+ F ++L++C LS+L G+QI I++ Y +++FVGSA +++Y C
Sbjct: 272 QYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFR 331
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++W +I GY +N E+A+ ++ ++ G+ D T ++++ C++
Sbjct: 332 RMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCAN 385
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 62/196 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P++ + ++ + + L LGRQ +I++ G+G + FVGS + +Y G
Sbjct: 136 VRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAK 195
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
+TW M+ G+ +N Q
Sbjct: 196 RVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQ 255
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD 132
A++ ++ + G+ D TF +ILT C +++E ++ + + DD
Sbjct: 256 ALNFFRRMRFQGIAIDQYTFGSILTACG----------ALSALEQGKQIHAYIIRTHYDD 305
Query: 133 LVVWG----DLVSSCQ 144
V G D+ S C+
Sbjct: 306 NVFVGSALVDMYSKCR 321
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG-NDIFVGSAPINIYCNCGV---- 55
V P F ++L +CA L +L LG+ I I K G + + ++ I++Y CG
Sbjct: 361 VEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAA 420
Query: 56 -------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+WN MI G A + + A+ L++ + G + D +TFV +L+ CSH+
Sbjct: 421 KQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHA 480
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV + F+SM D+++ PK C+ M K D +WG
Sbjct: 481 GLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGS 540
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C+VH NV L + AA
Sbjct: 541 LLGACRVHGNVELGEFAA 558
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + TVLS+CA+ SL LG + + I G G+++ + +A I++Y CG
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKAR 319
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GY+ ++A++L++ + S V+ + VTFV+IL C++ G
Sbjct: 320 DLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLG 379
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 48/151 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F +L SCAK+ + G+QI ++K G +D FV ++ IN+Y G
Sbjct: 128 VEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAE 187
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V+WN MI GYA++ E+
Sbjct: 188 LVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEE 247
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
A++ ++++ + V + T V +L+ C+ SG
Sbjct: 248 ALAFFQEMKRANVAPNESTMVTVLSACAQSG 278
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 28/119 (23%)
Query: 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---------- 56
P T+LS+C +L +QI ++I+K G N F S I C ++
Sbjct: 34 PSLTLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIEF---CAISPFGNLSYALL 87
Query: 57 ------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN MI G + + AI Y ++ GV+ + TF +L C+ G
Sbjct: 88 LFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVG 146
>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Glycine max]
Length = 622
Score = 92.0 bits (227), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 91/185 (49%), Gaps = 41/185 (22%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
V+SSCA L +L +G + ++++ ++ +G+A +++Y CG
Sbjct: 255 VISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKD 314
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113
+ W +I G A + Y E+A+ + ++ G +TF A+LT CSH+G+V +EIF
Sbjct: 315 VLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFE 374
Query: 114 SMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSNV 149
SM+ DH V+P+ C+ MP K + +W L+ +C++H NV
Sbjct: 375 SMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNV 434
Query: 150 RLAKK 154
+ ++
Sbjct: 435 EVGER 439
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 58/151 (38%), Gaps = 48/151 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P ++ +CA+L + +G Q + +K G+ D +V ++ +++Y + G
Sbjct: 113 LLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAAR 172
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
VTW+ MI GYA N E+
Sbjct: 173 SVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEK 232
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
A+ ++ + A GV + V +++ C+H G
Sbjct: 233 AVETFEALQAEGVVANETVMVGVISSCAHLG 263
>gi|410110045|gb|AFV61102.1| pentatricopeptide repeat-containing protein 81, partial [Nashia
inaguensis]
Length = 405
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 17/137 (12%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q+ F VL SC+ L++L LGRQI +VK G+ + +V SA I +Y CG
Sbjct: 264 QYTFAAVLRSCSDLATLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFE 323
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
VTWN +I YA++ + A+ L+ + +K D VTFVA LT CSH GLV
Sbjct: 324 SSXKETSVTWNSIIFAYAQHGQGKIALDLFYLMTERXIKLDHVTFVAALTACSHIGLVEE 383
Query: 108 EVEIFNSMEHDHEVKPK 124
+ + SME ++V P+
Sbjct: 384 GLSLLRSMETXYQVPPR 400
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ ++V+S+C + + LG + ++K G + +A +++Y
Sbjct: 162 YTLSSVISACFEDTQQSLGXSLHXXVIKKGLDZXTQISNALVSMYLKSNSRNVEDAXXIF 221
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN ++ G ++N E A+ L+++I + D TF A+L CS
Sbjct: 222 EHINXKDLVSWNTILTGLSQNGLSENALRLFQNIHLDHLVTDQYTFAAVLRSCS 275
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN +I GYAE +E+ ++L+ + GV+ D TF +LT
Sbjct: 24 AVSWNALIGGYAEMGBLERCVTLFVGMEMEGVRXDDATFAPLLT 67
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------------VTWNEMIHGY 64
L RQ+ +I+K G + V +A Y CG VTWN M+ Y
Sbjct: 77 LXRQLHGKIMKRGLEYENTVLNATXTAYAECGCIEDAKRVFDSSDGYRDLVTWNSMLAAY 136
Query: 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
E+ E +++ +++ ++ D T ++++ C
Sbjct: 137 LEHNLKECGFNIFLEMVRQRLEMDAYTLSSVISAC 171
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 101/198 (51%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAK-LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
V P +F F++VL++CA +S+ G+Q + +K G+ N + V SA + +Y G
Sbjct: 489 VEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESA 548
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN MI GYA++ ++++ +++++ + ++ DG+TF+ +++ C+H+
Sbjct: 549 NEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHA 608
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
GLV F+ M D+ + P C+ MP+ +W
Sbjct: 609 GLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRT 668
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+++C+VH NV+L + AA
Sbjct: 669 LLAACRVHLNVQLGELAA 686
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
+ P F F VL A ++ G Q+ T ++K G + IFVG++ +N+Y
Sbjct: 189 IKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAK 248
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN MI G+ N +A L+ + GVK F ++ C++
Sbjct: 249 AVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCAN 306
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ VL C L +G+Q+ + +K G+ D+ VG++ +++Y
Sbjct: 95 LSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMR 154
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+W ++ GY +N EQA+ L+ + G+K + TF A+L + G V V+
Sbjct: 155 VKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ 214
Query: 111 I 111
+
Sbjct: 215 V 215
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V TQ F TV+ CA + + +Q+ +++K+G D+ + +A + Y C
Sbjct: 290 VKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAF 349
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+W +I GY +N ++A++L+ + GV+ + T+ ILT
Sbjct: 350 KLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILT 404
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 21/117 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F ++T+L++ A +S QI +VK Y N VG+A + Y G
Sbjct: 392 VRPNHFTYSTILTANAAVSP----SQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAA 447
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W+ M+ GYA+ +E A+ ++ + GV+ + TF ++L C+
Sbjct: 448 KIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACA 504
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 91.7 bits (226), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +VL +C++L +L +G++I +G+ + +V +A + ++ CG
Sbjct: 213 PNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQV 272
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+WN MI G A + A+ LY ++ ++ D VTFV +L C+H G+
Sbjct: 273 FDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGM 332
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V ++F SME +V PK CL MP D V+WG L+
Sbjct: 333 VAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLL 392
Query: 141 SSCQVHSNVRLAKKAA 156
+C H NV L + AA
Sbjct: 393 GACSFHGNVELGEVAA 408
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 70/138 (50%), Gaps = 21/138 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P Q+ FT + +CA L +++ G+ + + K G+ +D+F +A +++Y G+
Sbjct: 80 PNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQL 139
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TWN +I GYA + ++E A+ L+ + V +++ A+++ + +G
Sbjct: 140 FDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNV----ISWTALISGYAQNGKY 195
Query: 106 YAEVEIFNSMEHDHEVKP 123
+E+F +E++ KP
Sbjct: 196 AKALEMFIGLENEKGTKP 213
>gi|414591101|tpg|DAA41672.1| TPA: hypothetical protein ZEAMMB73_535355 [Zea mays]
Length = 502
Score = 91.7 bits (226), Expect = 9e-17, Method: Composition-based stats.
Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 42/189 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKD-GYGNDIFVGSAPINIYCNCG-------------- 54
+VL+ CA L GR+I R+ + +D VG+A I++Y CG
Sbjct: 211 SVLNVCADEGQLMKGREIHGRMARCLASSSDTVVGNALIDMYGKCGQVDGAQAVFASMEE 270
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+W+ +I Y + ++A+ +Y+++++ GVK + VTFV+IL+ CSHSGLV I
Sbjct: 271 KNVVSWSSLISCYGVHGMGKEALRVYEEMVSVGVKPNCVTFVSILSSCSHSGLVSDGRRI 330
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F SM H V+P C+ MP + +WG L+S+C +H+
Sbjct: 331 FESMRKVHAVEPTADHYACMVDLLGRAGAIEEAVGLVNEMPMEPGASLWGALLSACAIHN 390
Query: 148 NVRLAKKAA 156
NV + + AA
Sbjct: 391 NVDVGEVAA 399
Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 26/151 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++ VL +CA+ LG + V+ G ++ V A +++Y G
Sbjct: 101 PDRYSVPAVLRACAESRDALLGSVLHGFAVRLGLLANVVVSGALLDMYAKTGTLGDAGRV 160
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYK--DIIASGVKHDGVTFVAILTPCSHSG 103
V WN M+ GYA E+ + L++ I ++G+ D ++L C+ G
Sbjct: 161 FDEMPERDAVAWNCMVTGYARAGRSEETLELFRKAQIESAGMARDLRAVPSVLNVCADEG 220
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134
+ EI M +CL D +V
Sbjct: 221 QLMKGREIHGRM-------ARCLASSSDTVV 244
>gi|410109997|gb|AFV61078.1| pentatricopeptide repeat-containing protein 81, partial [Lantana
montevidensis]
Length = 402
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 74/137 (54%), Gaps = 17/137 (12%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q+ F VL SC+ L++L LGRQI +VK G+ + +V SA I +Y CG
Sbjct: 261 QYTFAAVLRSCSDLATLQLGRQIHVLVVKSGFEGNEYVASALIFMYSKCGIIEDAWESFE 320
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
VTWN +I YA++ + A+ L+ + +K D VTFVA LT CSH GLV
Sbjct: 321 SSHKETSVTWNSIIFAYAQHGQGKIALDLFYLMTERRIKLDHVTFVAALTACSHIGLVEE 380
Query: 108 EVEIFNSMEHDHEVKPK 124
+ + SME ++V P+
Sbjct: 381 GLSLLRSMETXYQVPPR 397
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ ++V+S+C + + LG+ ++K G + +A +++Y
Sbjct: 159 YTLSSVISACFEDTQQSLGKSXHALVIKKGLDEVTQISNALVSMYLKSNSRNVEDALKIF 218
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN ++ G ++N E A+ L+++I + D TF A+L CS
Sbjct: 219 ERINVKDLVSWNTILTGLSQNGLSENALRLFQNIXLDHLVTDQYTFAAVLRSCS 272
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------ 54
F +L+ S L RQ+ +I+K G + V +A I Y CG
Sbjct: 58 TFAPLLTLLXDAESYDLXRQLHGKIMKXGLEYENTVLNATITAYAECGCIXDAKRVFDSS 117
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
VTWN M+ Y E+ E +++ +++ ++ D T ++++ C
Sbjct: 118 DGYRDLVTWNSMLAAYLEHNLEEYGFNIFLEMVRQRLEMDAYTLSSVISAC 168
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN +I GYAE +E+ ++L+ + GV+ D TF +LT
Sbjct: 21 AVSWNALIGGYAEMGNLERCVTLFVGMEMDGVRVDDATFAPLLT 64
>gi|242082860|ref|XP_002441855.1| hypothetical protein SORBIDRAFT_08g003540 [Sorghum bicolor]
gi|241942548|gb|EES15693.1| hypothetical protein SORBIDRAFT_08g003540 [Sorghum bicolor]
Length = 501
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 92/194 (47%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
T+F + +LS+CA L+ + GRQ+ I+K G+ ++FV S+ +++Y CG
Sbjct: 257 TEFTLSAILSTCASLALMIEGRQLHAVIIKYGFNGNLFVASSLVDVYARCGQIEEAYLVF 316
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V WN MI + + +A+ L++ + SG+ + VT+V++++ C H+GLV
Sbjct: 317 ADMKHKNVVLWNAMIASFTRHGKSWEAMILFEKMQQSGISPNEVTYVSMMSMCGHAGLVE 376
Query: 107 AEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDLVSS 142
F + D V+P L MP++ +WG L+ S
Sbjct: 377 EARSYFGLLISDQTVEPNVLHYSCMVDVLARSGKTDEAWELIQQMPFEPTPSMWGSLLGS 436
Query: 143 CQVHSNVRLAKKAA 156
C + NV +A+ AA
Sbjct: 437 CHKYMNVGIARLAA 450
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC---------- 53
++F ++ L +CA ++ RQ+ T +K ++ FVG+A +++Y C
Sbjct: 156 SEFTLSSTLCACAAENATTECRQLHTIAIKLALDSNSFVGTAFLDVYAKCNMINDACLVF 215
Query: 54 -------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW+ + G +N + A+ L++ G++ T AIL+ C+ L+
Sbjct: 216 EKIPEKTAVTWSTLFAGLVQNGLHKDALRLFQSSQREGIQLTEFTLSAILSTCASLALM 274
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 17/112 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F +L CAK SL +G+ + G D + +N+Y CG
Sbjct: 57 FALHELLQQCAKRRSLLVGKGCHGLAIHLGLATDTITCNILMNLYTKCGRNDCARDVFDA 116
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN MI GY + QA+ L+ + G + T + L C+
Sbjct: 117 MSFRSIVSWNTMIAGYTCHGDGLQALKLFSKMHQEGTRMSEFTLSSTLCACA 168
>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
Length = 1796
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F V+S+CA +SSL LG QI R G D + ++ ++ YC CG
Sbjct: 437 KFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFD 496
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V WN M+ GYA N + +A++++ + + GV+ +TFV +L+ C H GLV
Sbjct: 497 RMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEE 556
Query: 108 EVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSC 143
+ F +M+ D+ + P C+ MP K D +W ++ C
Sbjct: 557 GRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGC 616
Query: 144 QVHSNVRLAKKAA 156
H N L KK A
Sbjct: 617 VAHGNNILGKKVA 629
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT+F + VLS+ + L + G QI + +VK G +D+ V S+ + +Y G
Sbjct: 1038 LRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAM 1097
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI G A N V +A+ ++K+++ G D +T +L C+ G
Sbjct: 1098 KTFAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGG 1157
Query: 104 LVYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDL 139
LV + IF+SME ++ V P LMP++ ++WG L
Sbjct: 1158 LVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSL 1217
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+++ ++R ++ A
Sbjct: 1218 LCACEIYGDLRFTERVA 1234
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 48/154 (31%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F TV+ +C L +L G+QI RIV D D +GS+ +N+Y CG
Sbjct: 174 FVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNL 233
Query: 55 -------------------------------------VTWNEMIHGYAENEYVEQAISLY 77
V WN MI GY N +A+ L+
Sbjct: 234 MKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELF 293
Query: 78 KDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
++ GV+ D TF ++L+ CS G++ +++
Sbjct: 294 NNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQV 327
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 48/141 (34%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSA---------------------- 45
F +VLS+C+ L + G Q+ + K G+ NDI + SA
Sbjct: 308 FASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQ 367
Query: 46 ---------PINIYCNCG-----------------VTWNEMIHGYAENEYVEQAISLYKD 79
I +Y NCG ++WN MI G+++N +A+ L+ +
Sbjct: 368 AYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCE 427
Query: 80 IIASGVKHDGVTFVAILTPCS 100
+ G++ D + +++ C+
Sbjct: 428 MNKLGLRMDKFSLAGVISACA 448
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P QF +TV++ C+ L L G QI ++ G+ ++ V SA I+++ C
Sbjct: 939 PDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCNRLEDSVRV 998
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V N MI YA + + E A+ L+ + ++ T +L+ S
Sbjct: 999 FEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVS 1053
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKH---DGVTFVAILTPCSHSG 103
G+ WN MIHGYA N ++A+ L+KD+ + ++ D ++ C++ G
Sbjct: 135 GIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLG 187
Score = 35.8 bits (81), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG-NDIFVGSAPINIYCNCGV---- 55
+ P+ F ++T+LS +SS G+QI ++++G +++ VG++ I +Y GV
Sbjct: 838 IRPSGFTYSTLLSF---VSSACRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYA 894
Query: 56 -------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+WN +I ++ Y A+ + + + G D T ++T CS+
Sbjct: 895 FGVFITMEELDIISWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSN 953
>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 41/189 (21%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
+ LS+CA L +L G+ I + ++K + +++F SA I++Y CG
Sbjct: 380 SAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMRE 439
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I Y + ++E +++L+ ++ G++ D VTF+ IL+ C H+G V ++
Sbjct: 440 KNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQY 499
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F M ++ + + C+ MP+ D VWG L+ +C+VH
Sbjct: 500 FRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHG 559
Query: 148 NVRLAKKAA 156
NV LA+ A+
Sbjct: 560 NVELAEVAS 568
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +VL +CA L++L LG+++ I+K G VGSA +++Y CG
Sbjct: 273 PNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQI 332
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN +I ++N ++AI L++ + G+ +D V+ A L+ C++
Sbjct: 333 FRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACAN 388
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F +VLS CA + G Q+ ++ G+ D V +A + +Y G
Sbjct: 71 PNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKL 130
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN MI G+ +N ++++A L+ ++I++GV D +TF + L + S +
Sbjct: 131 FNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASL 190
Query: 106 YAEVEI 111
EI
Sbjct: 191 KQGKEI 196
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + L S + +SL G++I I++ G D+F+ SA I+IY C
Sbjct: 170 VSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMAC 229
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V +I GY N A+ +++ ++ + + VT ++L C+
Sbjct: 230 KIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACA 286
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 35 GYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQAISLY 77
G+ D FVGS+ I +Y G V WN M++G+ + A+ ++
Sbjct: 2 GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVF 61
Query: 78 KDIIASGVKHDGVTFVAILTPCSHSGL 104
+D+ K + +TF ++L+ C+ L
Sbjct: 62 EDMRNCQTKPNSITFASVLSICASEAL 88
>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Brachypodium distachyon]
Length = 661
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 89/197 (45%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P VL + A +++L GR ++ G+ +D++VGSA +++Y CG
Sbjct: 285 VEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHAR 344
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GYA + A+ L+ + K D VTF +L CS +G
Sbjct: 345 TIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAG 404
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L FN M+ H + P+ C+ MP++ D +WG L
Sbjct: 405 LTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSL 464
Query: 140 VSSCQVHSNVRLAKKAA 156
+ SC+V+ NV LA+ AA
Sbjct: 465 LGSCRVYGNVLLAEVAA 481
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 21/148 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P + LS+ + + +G+Q+ +VK G D V +A I++Y CG
Sbjct: 150 FPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVR 209
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+ N ++ G + N V +A+ L+++ I GV+ + V++ +I+ C +G
Sbjct: 210 VFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGR 269
Query: 105 VYAEVEIFNSME----HDHEVKPKCLMP 128
V++F +M+ + V C++P
Sbjct: 270 DLEAVDLFRTMQSIGVEPNSVTIPCVLP 297
>gi|326522488|dbj|BAK07706.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 799
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++VL +CA L SL G+ + +K G IF+G+A ++Y G
Sbjct: 512 PGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRM 571
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW MI G AEN E++I L++D++A+G+ + TF+A+L CSH GLV
Sbjct: 572 FYQMPERNDVTWTAMIQGLAENGLAEESILLFEDMMATGMTPNEHTFLALLFACSHGGLV 631
Query: 106 YAEVEIFNSMEHDHEVKPK-----CLM-------------------PYKDDLVVWGDLVS 141
+ F M+ + PK C++ P K + W L+S
Sbjct: 632 EQAIHYFEKMQA-WGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLS 690
Query: 142 SCQVHSNVRLAKKAA 156
+C + N + ++AA
Sbjct: 691 ACNTYKNEEIGERAA 705
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 48/142 (33%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F++VLS+CA L L G +I R +K G ++FV S+ I++YC C
Sbjct: 385 FSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLP 444
Query: 55 -----------------------------------VTWNEMIHGYAENEYVEQAISLYKD 79
+WN +I GYA+N A+ +
Sbjct: 445 EKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNA 504
Query: 80 IIASGVKHDGVTFVAILTPCSH 101
++ASG +TF ++L C++
Sbjct: 505 MLASGQVPGEITFSSVLLACAN 526
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
I G+ NE A+ +++ +++ GV+ +G+TFV ++ C +G
Sbjct: 221 ISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAG 263
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 89/196 (45%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +VL +C++L +L +G++I +G+ + +V +A + ++ CG
Sbjct: 213 PNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQV 272
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+WN MI G A + A+ LY ++ ++ D VTFV +L C+H G+
Sbjct: 273 FDEIGSKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGM 332
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V ++F SME +V PK CL MP D V+WG L+
Sbjct: 333 VAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLL 392
Query: 141 SSCQVHSNVRLAKKAA 156
+C H NV L + AA
Sbjct: 393 GACSFHGNVELGEVAA 408
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 70/138 (50%), Gaps = 21/138 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P Q+ FT + +CA L +++ G+ + + K G+ +D+F +A +++Y G+
Sbjct: 80 PNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQL 139
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TWN +I GYA + ++E A+ L+ + V +++ A+++ + +G
Sbjct: 140 FDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNV----ISWTALISGYAQNGKY 195
Query: 106 YAEVEIFNSMEHDHEVKP 123
+E+F +E++ KP
Sbjct: 196 AKALEMFIGLENEKGTKP 213
>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Vitis vinifera]
Length = 685
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F V+S+CA +SSL LG QI R G D + ++ ++ YC CG
Sbjct: 437 KFSLAGVISACASISSLELGEQIFARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFD 496
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V WN M+ GYA N + +A++++ + + GV+ +TFV +L+ C H GLV
Sbjct: 497 RMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLSACDHCGLVEE 556
Query: 108 EVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSC 143
+ F +M+ D+ + P C+ MP K D +W ++ C
Sbjct: 557 GRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKADTSMWSSVLRGC 616
Query: 144 QVHSNVRLAKKAA 156
H N L KK A
Sbjct: 617 VAHGNNILGKKVA 629
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 48/154 (31%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F TV+ +C L +L G+QI RIV D D +GS+ +N+Y CG
Sbjct: 174 FVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNL 233
Query: 55 -------------------------------------VTWNEMIHGYAENEYVEQAISLY 77
V WN MI GY N +A+ L+
Sbjct: 234 MKEPDAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELF 293
Query: 78 KDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
++ GV+ D TF ++L+ CS G++ +++
Sbjct: 294 NNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQV 327
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 48/141 (34%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSA---------------------- 45
F +VLS+C+ L + G Q+ + K G+ NDI + SA
Sbjct: 308 FASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQ 367
Query: 46 ---------PINIYCNCG-----------------VTWNEMIHGYAENEYVEQAISLYKD 79
I +Y NCG ++WN MI G+++N +A+ L+ +
Sbjct: 368 AYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCE 427
Query: 80 IIASGVKHDGVTFVAILTPCS 100
+ G++ D + +++ C+
Sbjct: 428 MNKLGLRMDKFSLAGVISACA 448
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKH---DGVTFVAILTPCSHSG 103
G+ WN MIHGYA N ++A+ L+KD+ + ++ D ++ C++ G
Sbjct: 135 GIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLG 187
>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
Length = 770
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 101/198 (51%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAK-LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
V P +F F++VL++CA +S+ G+Q + +K G+ N + V SA + +Y G
Sbjct: 393 VEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESA 452
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN MI GYA++ ++++ +++++ + ++ DG+TF+ +++ C+H+
Sbjct: 453 NEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHA 512
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
GLV F+ M D+ + P C+ MP+ +W
Sbjct: 513 GLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRT 572
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+++C+VH NV+L + AA
Sbjct: 573 LLAACRVHLNVQLGELAA 590
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
+ P F F VL A ++ G Q+ T ++K G + IFVG++ +N+Y
Sbjct: 189 IKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAK 248
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN MI G+ N +A L+ + GVK F ++ C++
Sbjct: 249 AVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCAN 306
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ VL C L +G+Q+ + +K G+ D+ VG++ +++Y
Sbjct: 95 LSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMR 154
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+W ++ GY +N EQA+ L+ + G+K + TF A+L + G V V+
Sbjct: 155 VKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ 214
Query: 111 I 111
+
Sbjct: 215 V 215
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V TQ F TV+ CA + + +Q+ +++K+G D+ + +A + Y C
Sbjct: 290 VKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAF 349
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDI-IASGVKHDGVTFVAILTPCS 100
V+W +I GY +N ++A++L+ + GV+ + TF ++L C+
Sbjct: 350 KLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACA 408
>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
Length = 452
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q +V+S+CA+L L + I + K+G G + V +A I++Y CG
Sbjct: 76 IKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAAR 135
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI+ +A + A+ + + +K +GVTFV +L CSH+G
Sbjct: 136 GVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAG 195
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F SM ++H + PK C+ MP ++V+WG L
Sbjct: 196 LVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSL 255
Query: 140 VSSCQVHSNVRLAKKAA 156
+++CQ+H L + AA
Sbjct: 256 MAACQIHGENELGEFAA 272
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 36/51 (70%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V W+ MI GYAE++ ++A++L+ ++ G+K D VT +++++ C+ G++
Sbjct: 46 VCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVL 96
>gi|357495605|ref|XP_003618091.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519426|gb|AET01050.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 828
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++L +C+ + S+ L RQ+ ++ +++VG++ + Y CG
Sbjct: 524 VIPNAVTLASILPACSSMGSMGLARQLHGFSIRRFLEKNVYVGTSLTDTYSKCGAISYAE 583
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VT+ M+ Y ++ ++A++LY ++ SG++ D VTFVAIL+ C++SG
Sbjct: 584 NVFLRTPEKNSVTYTTMMMCYGQHGMGKRALTLYDSMLRSGIRPDAVTFVAILSACNYSG 643
Query: 104 LVYAEVEIFNSMEHDHEVKP-------------------------KCLMPYKDDLVVWGD 138
LV ++IF SME H++KP K L + + +WG
Sbjct: 644 LVDEGLQIFESMEKVHKIKPSIEHYCCVADMLGRVGRVVEAYEFVKGLGEDANTMEIWGS 703
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ SC+ H + L K A
Sbjct: 704 LLGSCRNHGHFELGKAVA 721
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 18/113 (15%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDG--------YGNDIFVGSAPIN-----IYCNCG- 54
T +LS+ + L +L++G+Q +++ G Y D++ S I NC
Sbjct: 430 TALLSAASNLRNLYVGKQTHAYLIRRGIQFEGMESYLIDMYAKSGSIRTAELLFEQNCSS 489
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN +I GY +N E+AI L K ++ V + VT +IL CS G
Sbjct: 490 DRDQATWNAIIAGYTQNGLNEKAILLLKQMLVQNVIPNAVTLASILPACSSMG 542
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC---------------- 53
+VL++ ++L + L Q ++K G+ I + +A + +Y C
Sbjct: 330 SVLTAVSQLQQIKLAEQFHAFVIKSLPGSLIIILNAVMVMYSRCNHVDTSLKVFDKMLER 389
Query: 54 -GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I + +N + E+A+ L ++ D VT A+L+ S+
Sbjct: 390 DAVSWNTIISAFVQNGFDEEALMLVCEMQKQKFLIDSVTATALLSAASN 438
>gi|224063136|ref|XP_002301008.1| predicted protein [Populus trichocarpa]
gi|222842734|gb|EEE80281.1| predicted protein [Populus trichocarpa]
Length = 691
Score = 91.7 bits (226), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q+ + VL C+ L+S+ G+Q+ +K GY + +A I++Y CG
Sbjct: 445 QYIVSNVLKVCSSLASIGTGKQVHAFCIKRGYETEQVTITALIDMYSKCGEVEDGLVLFG 504
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V W +I G A+N +A+ +++ ++ SG+K + VT++ +LT C H+GLV
Sbjct: 505 CVADRDVVCWTGIIVGCAQNGRANEALEIFRQMVQSGLKPNEVTYLGVLTACRHAGLVVE 564
Query: 108 EVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSC 143
IF +M+ DH ++P+ C+ MP+K D +W ++ +C
Sbjct: 565 AQTIFGTMKCDHRLEPQLEHYYCMVDLLCQAGYFKEVEKLIAEMPFKPDKTIWSSMLGAC 624
Query: 144 QVHSNVRLAKKAA 156
H N L A
Sbjct: 625 GTHRNTGLVSTIA 637
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 48/157 (30%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F ++ VL +C + + LGR I R ++ DI + +A +++Y CG
Sbjct: 103 PNGFMYSVVLKACGLVGEIELGRLIHKRFSRENLDYDIVLLNALLDMYVKCGCLSDARKV 162
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKD-----------IIAS---------- 83
+WN MI GY + VE+A++L+ IIA
Sbjct: 163 FDRIFLRANSTSWNTMISGYFKEGLVEEAVNLFNQMPDRNVVSWNTIIAGLAENGSSRAL 222
Query: 84 ---------GVKHDGVTFVAILTPCSHSGLVYAEVEI 111
G+K D TF L CS++G + A +I
Sbjct: 223 QFVCKMHREGIKLDKFTFPCALKTCSYAGFLVAGKQI 259
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 23/118 (19%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F F L +C+ L G+QI ++K G + F SA +++Y NC
Sbjct: 237 KFTFPCALKTCSYAGFLVAGKQIHCYVLKSGLESSCFAVSALVDMYSNCNGLDDAIRLFD 296
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V WN M+ GY +E A+++ I SG D T + L C
Sbjct: 297 QYSGGTGSICDSLVLWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVC 354
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ ++ L C L ++ LG Q+ IV G+ D VGS +++Y G
Sbjct: 345 YTLSSALKVCINLLNVRLGIQVHALIVTSGHELDYVVGSILVDLYAKLGNMKDAFKLFHR 404
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W+ ++ G A+ E A+SL++D++ GV+ D +L CS
Sbjct: 405 LPKKDIVAWSGLLMGCAKMELNSLALSLFRDMVTFGVEVDQYIVSNVLKVCS 456
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 22/115 (19%)
Query: 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTW 57
C ++ +L G+ + ++K GY +++++ +++Y + VTW
Sbjct: 13 CGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKLFDEMPVKNIVTW 72
Query: 58 NEMIHGYAENEYVEQAISLYKDIIASGVK-HDGVTFVAILTPCSHSGLVYAEVEI 111
M+ Y N +AI LY ++ S + +G + +L C GLV E+E+
Sbjct: 73 TTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKAC---GLV-GEIEL 123
>gi|326507326|dbj|BAJ95740.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 798
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++VL +CA L SL G+ + +K G IF+G+A ++Y G
Sbjct: 511 PGEITFSSVLLACANLCSLVTGKMAHAKTIKLGMEESIFIGTALSDMYAKSGDLQSSKRM 570
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW MI G AEN + E++I L +D++A+G+ + TF+A+L CSH GLV
Sbjct: 571 FYQMPERNDVTWTAMIQGLAENGFAEESILLLEDMMATGMTPNEHTFLALLFACSHGGLV 630
Query: 106 YAEVEIFNSMEHDHEVKPK-----CLM-------------------PYKDDLVVWGDLVS 141
+ F M+ + PK C++ P K + W L+S
Sbjct: 631 EQAIHYFEKMQA-WGISPKEKHYTCMVDVLARAGRLIEAEALLMKTPSKSEANSWAALLS 689
Query: 142 SCQVHSNVRLAKKAA 156
+C + N + ++AA
Sbjct: 690 ACNTYKNEEIGERAA 704
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 48/142 (33%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F++VLS+CA L L G +I R +K G ++FV S+ I++YC C
Sbjct: 384 FSSVLSACATLEDLRGGARIHARSLKMGSSTNVFVSSSLIDMYCKCKKCRDAQTIFDTLP 443
Query: 55 -----------------------------------VTWNEMIHGYAENEYVEQAISLYKD 79
+WN +I GYA+N A+ +
Sbjct: 444 EKNIVCWNSLASGYSYNGKMVEAMYLFKKMPARNLASWNTIISGYAQNRQFVDALRSFNA 503
Query: 80 IIASGVKHDGVTFVAILTPCSH 101
++ASG +TF ++L C++
Sbjct: 504 MLASGQVPGEITFSSVLLACAN 525
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
I G+ NE A+ +++ +++ GV+ +G+TFV ++ C +G
Sbjct: 220 ISGFVRNELHHNALGVFRKMVSCGVRPNGITFVCMIKACVGAG 262
>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1611
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F T++ +C+ L++L GRQI IVK D FV ++ +++Y CG
Sbjct: 1235 VQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDAR 1294
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI G A++ ++A+ +K + + GV D VTF+ +L+ CSHSG
Sbjct: 1295 GLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSG 1354
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV E F SM+ ++ ++P+ CL MP++ ++ L
Sbjct: 1355 LVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTL 1414
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+V + K+ A
Sbjct: 1415 LNACRVQVDRETGKRVA 1431
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 17/113 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q + L L G+QI +VK G+ D+FV S +++Y CG
Sbjct: 1138 QITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFS 1197
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W MI G EN E A+ Y + S V+ D TF ++ CS
Sbjct: 1198 EIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACS 1250
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSS-LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
+ P QF +VL +C+ L +L QI +K G D FV +A I++Y G
Sbjct: 1032 LLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEA 1091
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFV 93
+WN ++HGY + +A+ LY + SG + D +T V
Sbjct: 1092 EFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLV 1142
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F +L+ A L+ L LG+QI +++ G + VG+ IN+Y G
Sbjct: 936 LTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQ 995
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN MI G + E ++ ++ ++ + D T ++L CS
Sbjct: 996 MNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACS 1047
>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 1131
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 97/198 (48%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q F +VL +CA +SSL G+++ + I G+ D S+ I++Y CG
Sbjct: 710 ILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSL 769
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++WN MI G A+N Y E+A+ ++K + + D VTF+ +L+ CSH+
Sbjct: 770 QVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHA 829
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CLMPY-------------------KDDLVVWGD 138
G V ++F+ M ++++++P+ C++ K D ++W
Sbjct: 830 GRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWST 889
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C+ H + K+AA
Sbjct: 890 LLGACRKHGDEVRGKRAA 907
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 67/116 (57%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F FT++ S+CA L L G Q+ T ++K+ + +++FV +A +++Y G
Sbjct: 408 PDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALKEARKQ 467
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I GY + EY ++A +++ ++++GV D V+ +I++ C++
Sbjct: 468 FEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACAN 523
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
T+ +VLS+ A LS L G + + +K+G ++++VGSA +N+Y C
Sbjct: 308 TRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVF 367
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN M+ G+A+N ++ + + + G + D TF +I + C+
Sbjct: 368 NSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACA 421
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +++S+CA + G+Q +VK G GS+ I++Y CG
Sbjct: 507 VLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAAR 566
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+ N +I GY + ++E+AI L+++I G+K VTF +L C
Sbjct: 567 DVFYSMPYRNVVSINALIAGYTMS-HLEEAIHLFQEIQMVGLKPTEVTFAGLLDGC 621
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P +F F VLS+C+ L + G+Q+ + K G+G F I++Y C
Sbjct: 138 VRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDAR 197
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+W +I GY + + +A+ ++ + G D + V ++
Sbjct: 198 LVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVIN 251
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCG------- 54
PT+ F +L C L LGRQI +++K G+ + V + + +Y N
Sbjct: 609 PTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRFADSET 668
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W +I GYA+ + E+A+ Y+ + + + D TF ++L C+
Sbjct: 669 LFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACA 725
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 23/120 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P Q TV+++ L L R++ T+I V WN MI
Sbjct: 241 PDQIALVTVINAYVALGRLADARKLFTQIPNPNV------------------VAWNVMIS 282
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
G+A+ + E+AIS + ++ +G+K + ++L+ + ++ + SM H +K
Sbjct: 283 GHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLN-----YGSMVHAQAIK 337
>gi|222624644|gb|EEE58776.1| hypothetical protein OsJ_10296 [Oryza sativa Japonica Group]
Length = 419
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P+ +T+L + A ++ + G+++ V G ++ V SA +++Y CG
Sbjct: 168 VLPSSATISTILPAFANVADVKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEAR 227
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI G A + + ++A+ L+ ++ G K D +TF A+LT CS+ G
Sbjct: 228 RLFDKMPQRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGG 287
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V ++ +M+ ++ V+P+ C+ MP + D VWG L
Sbjct: 288 MVEVGKILYRAMQVEYGVEPRLEHYACMVHLLGRAGRLDEAYGFIRAMPLEPDRFVWGAL 347
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ H N+ LA+ AA
Sbjct: 348 LGACRSHGNIELAELAA 364
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 95/196 (48%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + +TV+S+CA L L +G+++ +++G+ D+++GSA +++Y CG
Sbjct: 283 IIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERAL 342
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN +I G A + + ++A+ ++ + VK + VTFV++ T C+H+G
Sbjct: 343 LVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAG 402
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDL 139
LV I+ SM D+ + M ++ + V+WG L
Sbjct: 403 LVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGAL 462
Query: 140 VSSCQVHSNVRLAKKA 155
+ C++H N+ +A+ A
Sbjct: 463 LDGCRIHKNLVIAEIA 478
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI GY++N+ +AI+++ ++ G+ D VT +++ C+H G++
Sbjct: 253 ISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVL 303
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 95/196 (48%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + +TV+S+CA L L +G+++ +++G+ D+++GSA +++Y CG
Sbjct: 283 IIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERAL 342
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN +I G A + + ++A+ ++ + VK + VTFV++ T C+H+G
Sbjct: 343 LVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAG 402
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDL 139
LV I+ SM D+ + M ++ + V+WG L
Sbjct: 403 LVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGAL 462
Query: 140 VSSCQVHSNVRLAKKA 155
+ C++H N+ +A+ A
Sbjct: 463 LDGCRIHKNLVIAEIA 478
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI GY++N+ +AI+++ ++ G+ D VT +++ C+H G++
Sbjct: 253 ISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVL 303
>gi|147799436|emb|CAN76870.1| hypothetical protein VITISV_012312 [Vitis vinifera]
Length = 420
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F ++V+SSCA+L+SL G+ + + V G +D+ V SA +++Y CG
Sbjct: 6 VRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAW 65
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GYA+N +A++LY++++ +K D +TFV +L+ C H+G
Sbjct: 66 IVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAG 125
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F S+ H P C+ M ++ + ++W L
Sbjct: 126 LVERGQGYFYSISKIHGXNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTL 185
Query: 140 VSSCQVHSNVRLAKKAA 156
+S C+++ +V + AA
Sbjct: 186 LSVCRINCDVNNGEMAA 202
>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
Length = 584
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 90/198 (45%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F T LS+CA+ +L LGR++ RIV D +F+GSA +N+Y CG
Sbjct: 206 VVPDSATFVTTLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKAR 265
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW MI GY + + +AI L+ + G + VTFVA+L C+H+G
Sbjct: 266 DWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTPNDVTFVAVLAACAHAG 325
Query: 104 LVYAEVEIFNSMEHDHEVKPK----CLM---------------------PYKDDLVVWGD 138
LV F+SM+ + + P+ C M P + VW
Sbjct: 326 LVNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIRDSIPGEPGPEVWTA 385
Query: 139 LVSSCQVHSNVRLAKKAA 156
++ +C++H N L + A
Sbjct: 386 MLGACKMHKNFNLGVEVA 403
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 17/103 (16%)
Query: 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEM 60
LS+L G + V G+G+D FV +A + +Y CG V WN M
Sbjct: 122 LSALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAM 181
Query: 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
I GY +N E+AI +Y+++ + V D TFV L+ C+ +G
Sbjct: 182 ISGYEQNGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAG 224
>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
Length = 610
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++VL C+ LS+L GRQ+ +K ++ VG++ +++YC CG
Sbjct: 234 VQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDAC 293
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ QAI L++ + GV D +T +A+LT C H+G
Sbjct: 294 KVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTG 353
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L ++ F +M+ ++++P+ C+ MP++ +G L
Sbjct: 354 LCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTL 413
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+V+ N+ A+ AA
Sbjct: 414 LTACRVYKNLEFAEFAA 430
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 41/191 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F ++LSSCA + +L +G Q+ + +IFVG+A I++Y CG
Sbjct: 210 FTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNS 269
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
TWN MI GY + ++AI+ + ++ +GV+ + +TF+ +L CSH GLV
Sbjct: 270 MPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEG 329
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
V+ F+ M + +KP C++ P + D V+W L+ SC+
Sbjct: 330 VQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCK 389
Query: 145 VHSNVRLAKKA 155
+H NV + + A
Sbjct: 390 IHRNVEIGEMA 400
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F+ +L +C + R++ I++ GY D+ + + I Y G
Sbjct: 106 PDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKV 165
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI Y + E+A+ +Y + S V DG T V++L+ C+H G +
Sbjct: 166 FEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGAL 225
Query: 106 YAEVEI 111
+ V++
Sbjct: 226 HMGVQM 231
>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
Length = 620
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 59/198 (29%), Positives = 90/198 (45%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q F L +C+ L++L G+Q+ I K + D FVGSA +N+Y CG
Sbjct: 320 IRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLAR 379
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN +I YA + +AI LY+ + +G + + VT+V +L+ CSHSG
Sbjct: 380 KLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSG 439
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CLMPY------KDDL--------------VVWGD 138
LV ++IF SM +D + + CL+ DD VW
Sbjct: 440 LVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSA 499
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ C H N + AA
Sbjct: 500 LLGGCNAHGNESIGNLAA 517
Score = 41.6 bits (96), Expect = 0.11, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTW M++GY + + E ++ L++ ++ SG++ + VTF+ L CS
Sbjct: 290 VTWTTMMNGYLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACS 335
>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 823
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ Q + +VL +C++ +L G ++ R++K+G D+FV ++ ++Y CG
Sbjct: 447 IAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDAL 506
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I + + + E+A+ L+K+++ GVK D +TFV +L+ CSHSG
Sbjct: 507 SLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSG 566
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F M+ D+ + P C+ M + D +WG L
Sbjct: 567 LVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGAL 626
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+VH NV L K A+
Sbjct: 627 LSACRVHGNVDLGKIAS 643
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++LS+C + G I + +K G +++FV + I++Y G
Sbjct: 252 SLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVR 311
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
++WN +I Y NE +AISL++++ S ++ D +T +++ + S G + A
Sbjct: 312 DLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRA 366
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG----- 54
+ P ++ S ++L + R + ++ G + DI +G+A + +Y G
Sbjct: 344 IQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSA 403
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSH 101
++WN +I GYA+N + +AI +Y + G + + T+V++L CS
Sbjct: 404 RAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQ 463
Query: 102 SG 103
+G
Sbjct: 464 AG 465
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 24/118 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P F +VL +C ++ G +I +K G+ D++V ++ I++Y
Sbjct: 151 PDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARIL 207
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI GY ++ ++A++L + A D VT V++L+ C+ +G
Sbjct: 208 FDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAG 261
>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
Length = 643
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F++++ C L+SL G+Q+ ++ G+ +++F+ S+ I++YC CG
Sbjct: 267 VRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAH 326
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GYA + +A+ L++ + K + +TF+A+LT CSH+G
Sbjct: 327 CIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAG 386
Query: 104 LVYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDL 139
LV + F SM + + + P M K VW L
Sbjct: 387 LVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTL 446
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH N LA++ A
Sbjct: 447 LRACRVHKNTMLAEEVA 463
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 17/114 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT------ 56
P F +TVL A+ + + G ++ ++G+ +D+FVGS+ I++Y NC T
Sbjct: 168 PDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKV 227
Query: 57 -----------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
WN ++ G A+N VE+A+ +++ ++ +GV+ VTF +++ C
Sbjct: 228 FDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVC 281
>gi|326528959|dbj|BAJ97501.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 514
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/199 (28%), Positives = 92/199 (46%), Gaps = 43/199 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F LSSCA ++L LGR + V+ + VG++ +++Y G
Sbjct: 136 VGPDEFAVAAALSSCAGATALELGRSVHAAAVRLALDPFLSVGNSLVSMYAKTGSLGEAK 195
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+TW +I GYA+N +++ +Y D++ SG + D VTF+ +L CSH
Sbjct: 196 KVFDATRVDRCDPITWTALIVGYAQNGRGRESLEIYADMVRSGCRPDYVTFIGLLFACSH 255
Query: 102 SGLVYAEVEIFNSMEHDHEVKP-----KCLMPY-------------------KDDLVVWG 137
+GLV A F SM+ +H + P C++ + D VW
Sbjct: 256 AGLVDAGRAHFRSMQAEHGIAPGADHYACMVDLLGRAGRLDEAMDLLNRSTTRLDATVWK 315
Query: 138 DLVSSCQVHSNVRLAKKAA 156
L+++C+ H N LA+ AA
Sbjct: 316 ALLAACRTHRNAELAEHAA 334
Score = 36.6 bits (83), Expect = 3.5, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W ++ G A + + A+ +Y+D++A+GV D A L+ C+
Sbjct: 106 VSWTSLLTGLARSRSHDSALQVYRDMVAAGVGPDEFAVAAALSSCA 151
>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 974
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q F +VL +CA +SSL G++I + I G+ D S+ I++Y CG
Sbjct: 710 ILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSL 769
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++WN MI G A+N Y E+A+ ++K + + D VTF+ +L+ CSH+
Sbjct: 770 QVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHA 829
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CLMPY-------------------KDDLVVWGD 138
G V ++F+ M ++++++P+ C++ K D ++W
Sbjct: 830 GRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWST 889
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C+ H + K+AA
Sbjct: 890 LLGACRKHGDEVRGKRAA 907
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 67/116 (57%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F FT++ S+CA L L G Q+ T ++K+ + +++FV +A +++Y G
Sbjct: 408 PDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQ 467
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I GY + EY ++A +++ ++++GV D V+ +I++ C++
Sbjct: 468 FELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACAN 523
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
T+ +VLS+ A LS L G + + K+G ++++VGSA +N+Y C
Sbjct: 308 TRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVF 367
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN M+ G+A+N ++ + + + G + D TF +I + C+
Sbjct: 368 NSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACA 421
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 17/114 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P +F F VLS+C+ L + GRQ+ + K G+G F I++Y C
Sbjct: 138 VRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDAR 197
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+W +I GY + + +A+ ++ + G D +T V ++
Sbjct: 198 LVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVN 251
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTW--- 57
V P + +++S+CA + L G+Q +VK G GS+ I++Y CGV
Sbjct: 507 VLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAAR 566
Query: 58 --------------NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
N +I GY ++E+AI L+++I G+K VTF +L C
Sbjct: 567 DVFYSMPSRNVVSVNALIAGYTMG-HLEEAIHLFQEIQMVGLKPTEVTFAGLLDGC 621
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 19/117 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY----------------GNDIFVGSAP 46
PT+ F +L C L LGRQI +++K G+ + FV S
Sbjct: 609 PTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSET 668
Query: 47 INI---YCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ Y V W +I GYA+ + E+A+ Y+ + + + D F ++L C+
Sbjct: 669 LFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACA 725
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 23/120 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P Q TV+++ L L R++ T+I V WN MI
Sbjct: 241 PDQITLVTVVNAYVALGRLADARKLFTQIPNPNV------------------VAWNVMIS 282
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
G+A+ + E+AIS + ++ +G+K + ++L+ + ++ + SM H K
Sbjct: 283 GHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLN-----YGSMVHAQATK 337
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 48/202 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F T+L+ CA+L +L G+ I + ++ D+ VG+A I +Y CG
Sbjct: 472 VKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSL 531
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+W +I G A N +A+ L+ ++ G K D +TF+ +L+ CSH G
Sbjct: 532 EIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGG 591
Query: 104 LVYAEVEIFNSMEHDHEVKPKC--------------LMPYKDDLV-------------VW 136
LV FNSM+ H ++PK L+ ++L+ ++
Sbjct: 592 LVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLY 651
Query: 137 GDLVSSCQVHSNV----RLAKK 154
G L+S+C++H+NV RLAKK
Sbjct: 652 GALLSACRIHNNVDMGERLAKK 673
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY---------- 50
++P F + VL + L + G ++ IVK G D +V ++ I++Y
Sbjct: 239 LWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAK 298
Query: 51 -------CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCS 100
V+WN MI GY E AI+ ++++ G K D T V+ L+ C+
Sbjct: 299 KLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACT 356
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 58/148 (39%), Gaps = 47/148 (31%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKD-GYGN-------DIFVGSAPINI----- 49
P + + LS+C L +L LG +I + K+ G+ D++ +NI
Sbjct: 343 PDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIF 402
Query: 50 -----------------YCNCG-----------------VTWNEMIHGYAENEYVEQAIS 75
Y NCG V W MI+GY + + + A++
Sbjct: 403 DEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVA 462
Query: 76 LYKDIIASGVKHDGVTFVAILTPCSHSG 103
L++++ VK D T V +LT C+ G
Sbjct: 463 LFREMQIQRVKPDKFTVVTLLTGCAQLG 490
>gi|242085550|ref|XP_002443200.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
gi|241943893|gb|EES17038.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
Length = 502
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 42/189 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCG-------------- 54
VL+ CA L GR+I R+V+ + +DI VG+A +++Y CG
Sbjct: 211 NVLNVCANEGQLMKGREIHGRMVRCFAFDSDIAVGNALVDMYAKCGQVDGAQAVFASMKV 270
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
++W+ +I Y + ++A+ +Y+++++ GVK + +TF++IL+ CSHSGLV I
Sbjct: 271 RNVMSWSTLISCYGVHGMGKEALRIYEEMVSRGVKPNCITFISILSSCSHSGLVSDGRRI 330
Query: 112 FNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F SM H V+P C+ MP + +WG L+S+C H+
Sbjct: 331 FESMSKVHAVEPTADHYACMVDLLGRAGAIEEAVGIIRKMPMEPGASLWGALLSACATHN 390
Query: 148 NVRLAKKAA 156
NV + + AA
Sbjct: 391 NVDVGEVAA 399
Score = 38.9 bits (89), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 19/134 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P ++ VL +CA+L + LG ++ G ++ V A +++Y G
Sbjct: 99 LRPDRYSIPAVLRACAELRDMLLGAVFHGLALRLGLLANVVVSGALLDMYAKTGMLADAT 158
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYK--DIIASGVKHDGVTFVAILTPCSH 101
V WN M+ GYA E+ + L++ I + + D +L C++
Sbjct: 159 RVFDEMPERDAVVWNCMVTGYARAGRSEETLELFRKAQIESVDMARDLRAVPNVLNVCAN 218
Query: 102 SGLVYAEVEIFNSM 115
G + EI M
Sbjct: 219 EGQLMKGREIHGRM 232
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V +F VLS+C+ L +L LGR + + + FVG+A IN+Y CG
Sbjct: 251 VSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEAR 310
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+++N MI G A + +AI+ ++D++ G + + VT VA+L CSH G
Sbjct: 311 RVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGG 370
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ +E+FNSM+ V+P+ C+ +P + D ++ G L
Sbjct: 371 LLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTL 430
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N+ L +K A
Sbjct: 431 LSACKIHGNMELGEKIA 447
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 52/151 (34%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVG----------------- 43
V P + T+VL +C L + R+I +++K G+G+ VG
Sbjct: 123 VLPDNYVITSVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAK 178
Query: 44 --------------SAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQ 72
+ IN Y CG V W MI G N+ + +
Sbjct: 179 KMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNK 238
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
A+ L++++ V + T V +L+ CS G
Sbjct: 239 ALELFREMQMENVSANEFTAVCVLSACSDLG 269
>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Vitis vinifera]
Length = 1088
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 100/189 (52%), Gaps = 42/189 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG-------------- 54
T+++ C+ L +L G Q+ + I+K G+ N + + +A +++Y CG
Sbjct: 717 TIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNG 776
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN MI GY+++ ++A+ LY+++ G+ + VTF+AIL+ CSH+GLV + I
Sbjct: 777 KNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRI 836
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F SM+ D+ ++ K C+ MP + ++ WG L+ +C+VH
Sbjct: 837 FTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHK 896
Query: 148 NVRLAKKAA 156
++ + + AA
Sbjct: 897 DMDMGRLAA 905
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 22/140 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P QF FTT+L+ CA + GRQI +++ +I V + +++Y CG
Sbjct: 475 IQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAK 534
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC---- 99
+WN MI GY +N ++A+ L+K + +G+K D + ++L+ C
Sbjct: 535 EIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLS 594
Query: 100 -SHSGLVYAEVEIFNSMEHD 118
S G + N+ME +
Sbjct: 595 DSQKGRELHNFIVRNTMEEE 614
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 18/116 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+F ++L + A L+ + GR++ +V++ +DI +GSA +++Y CG
Sbjct: 376 NRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVF 435
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSH 101
V++N ++ GY + E+A+ LY D+ + G++ D TF +LT C++
Sbjct: 436 RSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCAN 491
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 17/113 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F + L C L S G+Q+ ++++ G+ D FVG+A I++Y C
Sbjct: 272 VCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCL 331
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
VTWN +I A+ + A+ L+ + SG K + +IL
Sbjct: 332 KVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSIL 384
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+ +F F +V+ +C + + RQ+ + +VK G ++FVG A ++ Y G
Sbjct: 172 FSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVT 231
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
VTWN +I GY + E+A ++ ++ GV D TF + L C
Sbjct: 232 SLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVC 286
Score = 44.7 bits (104), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
P+++++ C +S G+ I T+++ +GY D ++ + + +Y G
Sbjct: 72 LPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKL 131
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
WN MI YA + + + LY + SG D TF +++ C
Sbjct: 132 FEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKAC 185
>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V F F+++L L++L G+QI RI+K +G D+ V +A I++Y CG
Sbjct: 360 VRENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSKCGSLEDAH 419
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+ MI Y ++ ++A+ + ++ + G+ DGVTF+ L CSH G
Sbjct: 420 LVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCLYACSHGG 479
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV V +F M DH +KPK C+ M + D++VW L
Sbjct: 480 LVEEGVRVFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEAENFIDEMGIESDVLVWETL 539
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH + L +K+A
Sbjct: 540 LGACRVHGEMVLGEKSA 556
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 18/109 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F T+++ +C+K L G Q +K G ++ + +A I +Y C
Sbjct: 263 FTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPIYNALITMYSKCEKGVASPVKIFG 322
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
++W MI G+ +NE E+AI L+K+++ GV+ + +F +IL
Sbjct: 323 SISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSIL 371
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F ++ +C L +L L V+ G ++ FVGS+ ++ Y
Sbjct: 157 VKPNHITFAGLIGACDGLIALRLRGIFHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAI 216
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI G A N E A+ ++ ++ V+ DG T +I+ CS G
Sbjct: 217 KAFNEIMELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPG 276
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P LS+CA+L +L G+ I + + K D +G I++Y CG
Sbjct: 243 VEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEAL 302
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
W +I GYA + + +AIS + ++ G+K + +TF A+LT CS++G
Sbjct: 303 EVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTG 362
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV IF SME D+ +KP C+ MP K + V+WG L
Sbjct: 363 LVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGAL 422
Query: 140 VSSCQVHSNVRLAKK 154
+ +C++H N+ L ++
Sbjct: 423 LKACRIHKNIELGEE 437
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 68/135 (50%), Gaps = 22/135 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F ++L +C+ LS+ QI +I K GY ND++ ++ IN Y G
Sbjct: 116 YTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDR 175
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN +I GY + ++ A++L++ + + + +++ +++ + +
Sbjct: 176 IPEPDDVSWNSVIKGYVKAGKMDIALTLFRKM----AEKNAISWTTMISGYVQADMNKEA 231
Query: 109 VEIFNSMEHDHEVKP 123
+++F+ M+ + +V+P
Sbjct: 232 LQLFHEMQ-NSDVEP 245
Score = 42.7 bits (99), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 28/149 (18%)
Query: 6 FPFTTVLSSC-AKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCGVTWNEMIHG 63
+ T LS C + SS FL +IV DG+ D F+ WN MI G
Sbjct: 47 YAITKFLSFCISSTSSDFLP---YAQIVFDGFDRPDTFL--------------WNLMIRG 89
Query: 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP 123
++ ++ E+++ LY+ ++ S H+ TF ++L CS+ + F H
Sbjct: 90 FSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSN-------LSAFEETTQIHAQIT 142
Query: 124 KCLMPYKDDLVVWGDLVSSCQVHSNVRLA 152
K + Y++D+ L++S V N +LA
Sbjct: 143 K--LGYENDVYAVNSLINSYAVTGNFKLA 169
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 41/191 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F ++LSSCA + +L +G Q+ + +IFVG+A I++Y CG
Sbjct: 228 FTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNS 287
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
TWN MI GY + ++AI+ + ++ +GV+ + +TF+ +L CSH GLV
Sbjct: 288 MPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEG 347
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
V+ F+ M + +KP C++ P + D V+W L+ SC+
Sbjct: 348 VQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCK 407
Query: 145 VHSNVRLAKKA 155
+H NV + + A
Sbjct: 408 IHRNVEIGEMA 418
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F+ +L +C + R++ I++ GY D+ + + I Y G
Sbjct: 124 PDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKV 183
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI Y + E+A+ +Y + S V DG T V++L+ C+H G +
Sbjct: 184 FEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGAL 243
Query: 106 YAEVEI 111
+ V++
Sbjct: 244 HMGVQM 249
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 90/196 (45%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
VYP + +VL SCA L + G+ + I K + +G+ I+ Y CG
Sbjct: 319 VYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSV 378
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW +I G A N + A+ + ++ + VK + VTF+ +L+ CSH+
Sbjct: 379 EVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHAC 438
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +FNSM D +++P+ C+ MP+ + VVW L
Sbjct: 439 LVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTL 498
Query: 140 VSSCQVHSNVRLAKKA 155
++SC+ H N+ +A+K+
Sbjct: 499 LASCRAHKNIEMAEKS 514
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 17/112 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F F++VL +C+++ +L G Q+ I+K G+ ++ FV + I +Y NCG
Sbjct: 121 KFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFD 180
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V WN M+ GY +N ++ + L++ I+ ++ D VT +++L C
Sbjct: 181 GMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMAC 232
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+VL +C +L++L +G I IV G + + ++ I++Y CG
Sbjct: 227 SVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKR 286
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ MI GYA+ + ++A++L+ ++ V + VT V++L C+ G
Sbjct: 287 DVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLG 337
>gi|413932452|gb|AFW67003.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 719
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++ LSSCA L+ L GRQ+ +K G + G+A IN+Y CG
Sbjct: 430 PNDYAFSSGLSSCADLALLHQGRQLHCLALKLGCDFKVCTGNALINMYSKCGRIGSARLA 489
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +IHG A++ A+ + ++ +S + D TF+++L C+H+GLV
Sbjct: 490 FDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMCSSDWRPDDSTFLSVLVGCNHAGLV 549
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
F M + + P C+ MP++ D+++W L++
Sbjct: 550 KEGETFFRQMTDRYGLTPTPSHYACMIDMLGRNGRFAEALRMIENMPFEPDVLIWKTLLA 609
Query: 142 SCQVHSNVRLAKKAA 156
SC++H N+ + K AA
Sbjct: 610 SCKLHRNLDIGKLAA 624
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 20/123 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F F+ LS+C S+ LGRQI +K DI V +A +++Y G
Sbjct: 330 VQPNEFAFSIALSACG---SVCLGRQIHCSAIKRDLMTDIRVSNALLSMYGRSGFVSELE 386
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W I +N + E+A++L + + G + F + L+ C+
Sbjct: 387 AVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLA 446
Query: 104 LVY 106
L++
Sbjct: 447 LLH 449
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 42/188 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++L++CA+ SL LG++I + K G V +A I+++C CG
Sbjct: 327 SILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQ 386
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I G+A + + ++A+ L+ + G D VT + +L+ C+H G V
Sbjct: 387 KDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRH 446
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F++ME D+ + P+ C+ MP++ + V+WG L+S+C++H
Sbjct: 447 FSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHK 506
Query: 148 NVRLAKKA 155
NV A+ A
Sbjct: 507 NVEYAEIA 514
>gi|357511423|ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 607
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 95/195 (48%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F++VL +CA SSL +G Q+ I+K G ND+ ++ +++Y CG
Sbjct: 267 PNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLTSLVDMYAKCGDMDAAFGV 326
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I GYA + +A+ + + G D VTFV +L+ C H+GLV
Sbjct: 327 FESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVGTP-DEVTFVNVLSACVHAGLV 385
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F M + ++ + C+ MP++ D+V+WG L++
Sbjct: 386 EEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRFDEAENLIKNMPFEPDVVLWGALLA 445
Query: 142 SCQVHSNVRLAKKAA 156
+C +HSN+ L + AA
Sbjct: 446 ACGLHSNLELGEYAA 460
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 43/193 (22%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q T+VL +C L+ L LGRQ+ ++K Y D+ + +A +++YC CG
Sbjct: 164 QTTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFV 221
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
++W+ MI G A+N Y ++A+ L++ + G+K + VT V +L CSH+GLV
Sbjct: 222 RMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEE 281
Query: 108 EVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSC 143
+ F+SM+ + P C+ M + D V W L+++C
Sbjct: 282 GLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNAC 341
Query: 144 QVHSNVRLAKKAA 156
+VH NV +A AA
Sbjct: 342 RVHRNVDVAIHAA 354
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 22/126 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F +++VL +C L +L RQ+ I+K G +D+FV SA I++Y G
Sbjct: 62 VRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENAL 118
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ +I G+A+N ++A+ L+K + +G T ++L C +G
Sbjct: 119 RVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRAC--TG 176
Query: 104 LVYAEV 109
L E+
Sbjct: 177 LALLEL 182
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 41/186 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
VL++CA L +L LG + ++ + ++I + ++ I++Y CG
Sbjct: 232 AVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKR 291
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIF 112
V+WN +I G+A N + ++++ + + G K DGV++ LT CSH+GLV +E+F
Sbjct: 292 TLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELF 351
Query: 113 NSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSN 148
++M+ H++ P+ C+ MP K + VV G L+++C+ H +
Sbjct: 352 DNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGD 411
Query: 149 VRLAKK 154
V LA++
Sbjct: 412 VNLAER 417
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 55/156 (35%)
Query: 1 VYPTQFPFTTVLSSCAKL--SSLFLGRQILTRIVKDGYGND---IFVGSAPINIYCNCG- 54
V P F T+LS+CA S F + K YG D + VG+A I++Y C
Sbjct: 88 VEPNHITFITLLSACADFPSESFFFASSLHGYACK--YGLDTGHVMVGTALIDMYSKCAQ 145
Query: 55 ----------------VTWNEMIHGYAENEYVEQAISLY-----KDIIA----------- 82
V+WN M++G+ N +E AI L+ +D I+
Sbjct: 146 LGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKH 205
Query: 83 ---------------SGVKHDGVTFVAILTPCSHSG 103
SGV D V+ +A+L C+ G
Sbjct: 206 GYSEQALECFHQMQRSGVAADYVSIIAVLAACADLG 241
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + ++L +C LS+L G+ + VK G +D V ++ I +Y CG
Sbjct: 516 PDRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTV 575
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN M+ GY ++ +A+ L+K ++ V + +TF A+++ C +GLV
Sbjct: 576 FDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLV 635
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
EIF M+ D +KP C+ MP + D+ VW L+
Sbjct: 636 QEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLG 695
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H NV+LA+ AA
Sbjct: 696 ACKSHDNVQLAEWAA 710
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F ++L +C S L R+I T + G D+ V +A I +Y CG
Sbjct: 175 IEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLAC 234
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W +I A++ + +A LY+ ++ +G+ + VTFV++L C+
Sbjct: 235 EIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCN 291
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 22/125 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F ++L+SC +L GR+I + I + G D+ V +A I +YC C
Sbjct: 276 ISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDAR 335
Query: 55 -----------VTWNEMIHGYAENEY-----VEQAISLYKDIIASGVKHDGVTFVAILTP 98
++W+ MI GYA++ Y +++ L + + GV + VTF++IL
Sbjct: 336 ETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKA 395
Query: 99 CSHSG 103
CS G
Sbjct: 396 CSVHG 400
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 61/162 (37%), Gaps = 54/162 (33%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+P + F ++L +C+ +L GRQI I K G+ +D + +A N+Y CG
Sbjct: 382 VFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAE 441
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V+WN MI GYA++ + +
Sbjct: 442 QVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAK 501
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPC------SHSGLVYAE 108
L + G + D VT ++IL C LV+AE
Sbjct: 502 VFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAE 543
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 73/162 (45%), Gaps = 26/162 (16%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
++ CAKL G+ + ++ + G DI++G++ IN Y G
Sbjct: 84 IIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRD 143
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIF- 112
VTW+ MI YA N + +A ++ + + ++ + +TF++IL C++ ++ EI
Sbjct: 144 VVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHT 203
Query: 113 ----NSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVR 150
+ ME D V + Y G++ +C++ ++
Sbjct: 204 VVKASGMETDVAVATALITMYSK----CGEISLACEIFQKMK 241
>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
Length = 1084
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T +L + A +SSL GR+I ++ G+ D + +A +++Y CG
Sbjct: 710 PNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVL 769
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI GY + + A++L++ + SGV+ D +F AIL C HSGL
Sbjct: 770 FDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLT 829
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ FN+M +++++PK C+ MP + D +W L+
Sbjct: 830 AEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLH 889
Query: 142 SCQVHSNVRLAKKAA 156
C++H +V+LA+K A
Sbjct: 890 GCRIHRDVKLAEKVA 904
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 22/143 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + VL A L S+ G I + K G G V +A I +Y CG
Sbjct: 194 VSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAM 253
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN I GY N + ++A+ L+ + + G + VT +++L C+ G
Sbjct: 254 QVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELG 313
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL 126
E+ + H + +K L
Sbjct: 314 F-----ELVGKVVHGYSMKSGLL 331
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 18/113 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F T+VL A SL G+ + +++G + V +A + +Y NC
Sbjct: 608 IKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEAR 667
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
++WN +I GY+ N + ++ SL+ D++ K + VT IL
Sbjct: 668 LVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCIL 719
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 17/104 (16%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+VL +CA+ F+GR + VK G + + +A +++Y NC
Sbjct: 516 SVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQK 575
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V+W MI Y ++ L ++++ G+K D ++L
Sbjct: 576 NVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVL 619
>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
Length = 844
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ Q + +VL +C++ +L G ++ R++K+G D+FV ++ ++Y CG
Sbjct: 365 IAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDAL 424
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I + + + E+A+ L+K+++ GVK D +TFV +L+ CSHSG
Sbjct: 425 SLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSG 484
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F M+ D+ + P C+ M + D +WG L
Sbjct: 485 LVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGAL 544
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+VH NV L K A+
Sbjct: 545 LSACRVHGNVDLGKIAS 561
Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG----- 54
+ P ++ S ++L + R + ++ G + DI +G+A + +Y G
Sbjct: 262 IQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSA 321
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSH 101
++WN +I GYA+N + +AI +Y + G + + T+V++L CS
Sbjct: 322 RAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQ 381
Query: 102 SG 103
+G
Sbjct: 382 AG 383
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 31/170 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P F +VL +C ++ G +I +K G+ D++V ++ I++Y
Sbjct: 84 PDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARIL 140
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN MI GY ++ ++A++L + A D VT V++L+ C+ +G
Sbjct: 141 FDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRA----MDSVTVVSLLSACTEAGDF 196
Query: 106 YAEVEIFN-SMEH--DHEVKPKCL----MPYKDDLVVWGDLVSSCQVHSN 148
V I + S++H + E+ C Y DL+ W ++ + +++
Sbjct: 197 NRGVTIHSYSIKHGLESELLRDCQKVFDRMYVRDLISWNSIIKAYELNEQ 246
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPI--NIYCNCGVTWNEMIHGYAEN 67
++LS+C + G I + +K G +++ + +Y ++WN +I Y N
Sbjct: 185 SLLSACTEAGDFNRGVTIHSYSIKHGLESELLRDCQKVFDRMYVRDLISWNSIIKAYELN 244
Query: 68 EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
E +AISL++++ S ++ D +T +++ + S G + A
Sbjct: 245 EQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRA 284
>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
Length = 878
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAK-LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
P +F ++V+ +CA + + LGRQ +K + + V SA +++Y G
Sbjct: 503 PNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQC 562
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+WN M+ GYA++ Y ++A+ +++ + A G++ DGVTF++++ C+H+GL
Sbjct: 563 IFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGL 622
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLV 140
V F+SM D+ + P C+ M + +VW L+
Sbjct: 623 VEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLL 682
Query: 141 SSCQVHSNVRLAKKAA 156
+C+VH NV L K AA
Sbjct: 683 GACKVHKNVELGKLAA 698
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+P F +VLS A + LGR++ + VK G + +FV ++ +N+Y CG
Sbjct: 201 VWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEAR 260
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN ++ G N + +A+ L+ D +S T+ ++ C++
Sbjct: 261 VVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCAN 318
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 18/112 (16%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
TQ + TV+ CA + L L RQ+ + ++K G+ + V +A ++ Y G
Sbjct: 305 TQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIF 364
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+W MI+G +N V A +L+ + GV + T+ ILT
Sbjct: 365 LLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILT 416
Score = 39.3 bits (90), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 18/113 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG--------------- 54
VL C + LG+Q+ ++ G+ D+ VG++ +++Y
Sbjct: 109 VLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKR 168
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW ++ GY ++ + + L+ + A GV + VTF ++L+ + G+V
Sbjct: 169 NVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMV 221
>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
Length = 794
Score = 91.3 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 56/199 (28%), Positives = 92/199 (46%), Gaps = 43/199 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T+L CA L++ G++I V+ +D+ VGSA +++Y CG
Sbjct: 489 VVPNNITLMTLLPGCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSR 548
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHS 102
+TWN +I Y + ++AI+L+ ++AS K + VTF+A L CSHS
Sbjct: 549 AVFDRLPRRNVITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHS 608
Query: 103 GLVYAEVEIFNSMEHDHEVKP-------------------------KCLMPYKDDLVVWG 137
G+V +E+F SM+ +H V+P + P + + W
Sbjct: 609 GMVDRGLEMFRSMKRNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWS 668
Query: 138 DLVSSCQVHSNVRLAKKAA 156
+ +C++H NV L + AA
Sbjct: 669 SFLGACRLHRNVALGEIAA 687
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 25/123 (20%)
Query: 4 TQFPFTTVLSSCAKLSS-LFLGRQILTRIVKDGY--GNDIFVGSAPINIYCNCG------ 54
T F +VL +C+ L+ L LGR+ +K+G+ G++ F +A +++Y G
Sbjct: 159 TSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQ 218
Query: 55 ----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTP 98
VTWN M+ ++ +AI + D++A GV+ DGVTF + L
Sbjct: 219 TLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPA 278
Query: 99 CSH 101
CS
Sbjct: 279 CSQ 281
Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 21/123 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCN---CGVT 56
V P F + L +C++L L LGR++ ++KD + FV SA +++Y + G
Sbjct: 265 VRPDGVTFASALPACSQLEMLSLGREMHAYVLKDADLAANSFVASALVDMYASHERVGAA 324
Query: 57 ----------------WNEMIHGYAENEYVEQAISLYKDI-IASGVKHDGVTFVAILTPC 99
WN MI GYA+ E A+ L+ + +GV T +L C
Sbjct: 325 RLVFDMVPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSC 384
Query: 100 SHS 102
+ S
Sbjct: 385 ARS 387
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 19/109 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQ-ILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
V P++ VL SCA+ S F G++ + +VK G ++ FV +A +++Y G
Sbjct: 370 VVPSETTIAGVLPSCAR-SETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAA 428
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVT 91
V+WN +I G ++ A L +++ G D T
Sbjct: 429 RWIFATIEPRDVVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAAT 477
>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 697
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 96/198 (48%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P FT+VL++C++L++L GR+I IV+ GN+ V A +++Y CG
Sbjct: 405 VEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVVMGALLDMYAKCGAVEEAF 464
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI Y + V +A+ L+ +++ S VK D VTF+AIL+ CSH+G
Sbjct: 465 GVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSACSHAG 524
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CLMPY--------------------KDDLVVWGD 138
LV + FN M + + + P+ CL+ DD +
Sbjct: 525 LVDDGLYHFNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEILQSNPEISDDFQLLST 584
Query: 139 LVSSCQVHSNVRLAKKAA 156
L S+C++H N+ L + A
Sbjct: 585 LFSACRLHKNLDLGVEIA 602
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TT +SSCA+L L GR+I +V G+ D FV +A +++Y CG
Sbjct: 205 PDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEV 264
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI+GY I L+K + + GVK T + L CS S
Sbjct: 265 FEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSA 322
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 17/130 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT T+ L +C++ + L G+ + I+++ DIF+ S+ +++Y CG
Sbjct: 304 VKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAE 363
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY + A+ L+ ++ S V+ D +TF ++L CS
Sbjct: 364 TIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACSQLA 423
Query: 104 LVYAEVEIFN 113
+ EI N
Sbjct: 424 ALEKGREIHN 433
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + +VL +C L + LG+ I T +VK+G DI VGS+ + +Y C
Sbjct: 104 PDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKL 163
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
WN +I Y ++ E+A+ + + G + D VT ++ C+
Sbjct: 164 FDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCAR 219
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P + +TVLS+C L +L GR + I + G D+ VG++ +++Y CG
Sbjct: 308 VKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETSL 367
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN +I+G+A + + +A+ + ++ASG+ + V+F+ +L C HSG
Sbjct: 368 SIFRKMPLKNLSSWNALINGFALHGHGREALEHFDRMVASGLAPNEVSFIIVLGACCHSG 427
Query: 104 LVYAEVEIFNSMEHDHEVKP------------------------KCLMPYKDDLVVWGDL 139
LV +++F SM++ +++ P MP + + WG L
Sbjct: 428 LVQEGLQLFESMKNSYKLSPWEEHYGSVVDLLGRAGLIHEAYSVTKAMPMRPAVFTWGAL 487
Query: 140 VSSCQVHSNVRLAKK 154
+S+CQ H V +++
Sbjct: 488 LSACQAHRQVDFSQQ 502
>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
Length = 987
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P VLS+CA L+ L G+QI + ++ + V +A I +Y G
Sbjct: 612 PNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRV 671
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+TW MI A++ EQA+ L+++++ GVK D +T+V +L+ C+H+G
Sbjct: 672 FDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGF 731
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V + M+++H + P+ C+ MP D VVWG L+
Sbjct: 732 VDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLL 791
Query: 141 SSCQVHSNVRLAKKAA 156
++C+V N LA+ AA
Sbjct: 792 AACRVRKNADLAELAA 807
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 32/168 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+QF T VLSSCA + + +GR++ +VK G + + V ++ + +Y CG
Sbjct: 345 PSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAV 404
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN M+ Y +E A+S++++++ + V++ I+ + +GL
Sbjct: 405 FERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI----VSWNTIIAGYNQNGLD 460
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAK 153
++ F+ M ++P D ++S+C +N+R+ K
Sbjct: 461 GMALKFFSRMLSASSMEP--------DAFTVTSVLSAC---ANLRMLK 497
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 50/148 (33%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F T+VLS+CA L L +G+Q+ + I++ G + +A I+ Y G
Sbjct: 478 PDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRI 537
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
+ W MI GY +N ++
Sbjct: 538 MDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDE 597
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCS 100
A+ L++ +I G + + T A+L+ C+
Sbjct: 598 AMELFRSMILIGPEPNSHTLAAVLSACA 625
>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 833
Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+YP FT+VL++ + +++L G+ + +V+ D+ V + I++Y CG
Sbjct: 540 LYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLLKYAQ 599
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GY + +AI L+ ++ +SG+K D VTF+++L+ C+HSG
Sbjct: 600 HIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCNHSG 659
Query: 104 LVYAEVEIFNSMEHDHEVKPK---------------CL---------MPYKDDLVVWGDL 139
L+ + +F M+ ++P+ CL MP + D +W L
Sbjct: 660 LIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSIWLSL 719
Query: 140 VSSCQVHSNVRLAKKAA 156
+ SC++H N+ L + A
Sbjct: 720 LCSCKIHLNLELGEMVA 736
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
VY T+F + ++L +CA LS+L G+ I + I+ G +D ++ S+ INIY CG
Sbjct: 49 VYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAV 108
Query: 55 ----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH 87
WN +I GY +E+ + + + +SG K
Sbjct: 109 KVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYKE 157
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT----------- 56
FT LS+C + + G+Q+ +K G+ +D +V ++ + +Y C +
Sbjct: 244 FTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVP 303
Query: 57 ------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
WN +I Y N Y A+ +YK + V D T + +LT S +GL
Sbjct: 304 DKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGL 357
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +++S+C L + LG I ++K G D+FV S+ +++Y G
Sbjct: 439 VKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAG 498
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN +I Y N + +I+L+ ++ + + D V+F ++L S
Sbjct: 499 NIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAIS 555
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V F VL+S + LGR I T IVK + I + SA + +Y G
Sbjct: 338 VLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYAN 397
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W +I G+ +N ++A+ ++ + A VK D +I++ C+
Sbjct: 398 SIFSTMKERDVVAWGSVISGFCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACT 454
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 18/100 (18%)
Query: 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------------VTWNEMIHGYA 65
G+QI + IV++ D F+ +A I+ Y CG V WN MI G+
Sbjct: 158 GKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFG 217
Query: 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
EN E ++ Y VK +F L+ C V
Sbjct: 218 ENGLWENSLEYYLLAKTENVKVVSSSFTCTLSACGQGEFV 257
>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + TVL CA ++++ LG+QI +I+K +D+++ S +++Y CG
Sbjct: 538 VIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSR 597
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW+ MI YA + + EQAI L++++ VK + F+++L C+H G
Sbjct: 598 LMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMG 657
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
V + F M+ + + P C+ M ++ D V+W L
Sbjct: 658 YVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTL 717
Query: 140 VSSCQVHSNVRLAKKA 155
+S+C++ NV +A+KA
Sbjct: 718 LSNCKMQGNVEVAEKA 733
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F + +V+ +CA +L G +I RIVK G G D FVGSA +++Y CG
Sbjct: 439 PDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKI 498
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I G++ + E A + ++ GV D T+ +L C++ +
Sbjct: 499 HDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATI 558
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F+ VL +C+ + LG Q+ ++ G+ ND+ GSA +++Y C
Sbjct: 141 FSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMP 200
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W+ +I GY +N+ + + L+KD++ G+ T+ ++ C+
Sbjct: 201 ERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCA 250
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV-------- 55
+Q + +V SCA LS+ LG Q+ +K + D +G+A +++Y C
Sbjct: 238 SQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVF 297
Query: 56 ---------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++N +I GYA + +A+ +++ + + + D ++ LT CS
Sbjct: 298 NTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACS 351
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 22/132 (16%)
Query: 3 PTQ-FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
PT+ F F+ +L C+ L +L G+Q +++ + I+V + + YC
Sbjct: 3 PTKKFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFK 62
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
++WN MI GYAE + A SL+ + + D V++ ++L+ H+G+
Sbjct: 63 VFDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTM----PERDVVSWNSLLSCYLHNGV 118
Query: 105 VYAEVEIFNSME 116
+EIF M
Sbjct: 119 NRKSIEIFVRMR 130
Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 17/113 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+ + L++C+ + G Q+ VK G G +I V + +++Y CG
Sbjct: 340 EISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFD 399
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I + +NE + + +SL+ ++ S ++ D T+ +++ C+
Sbjct: 400 DMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACA 452
>gi|242039301|ref|XP_002467045.1| hypothetical protein SORBIDRAFT_01g018760 [Sorghum bicolor]
gi|241920899|gb|EER94043.1| hypothetical protein SORBIDRAFT_01g018760 [Sorghum bicolor]
Length = 564
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F F +++ CA L G Q+ +++K +D FVGS + +Y CG
Sbjct: 319 VEPNEFTFASMIKGCAMQDLLEQGAQLHAQVIKTSLISDSFVGSTLVYMYGKCGLISLSL 378
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I+ YA++ + AI + + ASG++ + +TFV +LT CSH+G
Sbjct: 379 QLFNEIGYHSEVAWNAVINVYAQHGHGWGAIQAFDRMTASGIRPNHITFVCLLTACSHAG 438
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +E F SM+ H ++PK C+ MP K + W L
Sbjct: 439 LVDEGLEYFYSMKDAHGIEPKEEHYSCIIDMYGRAGRLDEAEKFISEMPVKPNAYGWCSL 498
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++ N L + AA
Sbjct: 499 LGACRMRGNKELGEIAA 515
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 18/123 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V Q F + LS+ L + GR + I+K G+ + V +A +++Y G
Sbjct: 217 VGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKSGDLESAS 276
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+ +I GY E + +E+A+ Y ++ GV+ + TF +++ C+
Sbjct: 277 RVVKIDPGGWNVVSGTSLIDGYIEVDRIEEALETYTELGRQGVEPNEFTFASMIKGCAMQ 336
Query: 103 GLV 105
L+
Sbjct: 337 DLL 339
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 17/102 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PTQF ++ + A LS+ G Q+ + G+ ++FV S ++Y CG
Sbjct: 115 VAPTQFALSSAARAAAALSAPRPGTQLHCIGTRFGFDTELFVASNLADMYSKCGLLDEAC 174
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGV 85
VTW MI GYA+N ++ AI ++D+ G+
Sbjct: 175 RVFDQMPHRDAVTWTTMIDGYAKNGSLKAAILAFRDMKCEGL 216
>gi|242037439|ref|XP_002466114.1| hypothetical protein SORBIDRAFT_01g001585 [Sorghum bicolor]
gi|241919968|gb|EER93112.1| hypothetical protein SORBIDRAFT_01g001585 [Sorghum bicolor]
Length = 627
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 41/194 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++ LSSCA L+ L GRQ+ +K G + G+A IN+Y CG
Sbjct: 336 PNDYAFSSGLSSCADLALLDQGRQLHCLALKLGCDFKVCTGNALINMYSKCGQIGSARLA 395
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +IHG A++ + + ++ +SG + D TF+A+L C+H+GLV
Sbjct: 396 FDVMNLHDVMSWNSLIHGLAQHGAANLVLEAFSEMCSSGWQPDDSTFIAVLVGCNHAGLV 455
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
F M + + P C+ MP++ D+++W L++
Sbjct: 456 KEGETFFRLMTDRYGLTPTPSHYACMIDMLGRNGRFDEALHMIENMPFEPDVLIWKTLLA 515
Query: 142 SCQVHSNVRLAKKA 155
SC++H N+ + K A
Sbjct: 516 SCKLHKNLDIGKLA 529
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 20/122 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F F+ L +C + LGRQI ++K DI V +A +++Y G
Sbjct: 236 VEPNEFAFSIALGACGFVC---LGRQIHCSVIKCNLMTDIRVSNALLSMYGRSGFVSEID 292
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W I +N + E+A++L + + G + F + L+ C+
Sbjct: 293 AVLGKIENPDLVSWTAAISANFQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLSSCADLA 352
Query: 104 LV 105
L+
Sbjct: 353 LL 354
>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like [Brachypodium distachyon]
Length = 610
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 94/192 (48%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F ++ + A L++ LGRQ+ + ++ G+ + + VG+A +++Y C
Sbjct: 239 FVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEE 298
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
++W M+ G A++ E+A SLY ++ +GVK + VTFV ++ CSH+GLV
Sbjct: 299 ITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKG 358
Query: 109 VEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVSSCQ 144
++F+SM+ ++ + P+ MPY D W L+S+C+
Sbjct: 359 RQLFDSMKGEYGINPRLQHYTCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACK 418
Query: 145 VHSNVRLAKKAA 156
++N ++ + A
Sbjct: 419 KYNNAEMSIRVA 430
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F ++ S+ A+L SL LG+Q+ V Y +D V S+ I++YC CG
Sbjct: 101 LRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDAR 160
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W +I GY N ++A+ L++ + + + A+++ SG
Sbjct: 161 KVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGRTL----FAWTALISGFVRSG 216
Query: 104 LVYAEVEIFNSMEHD 118
+ V++F M D
Sbjct: 217 ESVSAVKLFVDMRRD 231
>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 783
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 41/194 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F F +++ + L+S+F G+Q +I+K G +D + +A I++Y CG
Sbjct: 539 PNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRLL 598
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ WN MI YA++ + E+A+ ++ + +GV+ + VTFV++L+ C+H+GLV
Sbjct: 599 FESTLGKDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSACAHAGLV 658
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVS 141
+ FNSM+ + V+P MP + +W L+S
Sbjct: 659 DEGLHHFNSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVATIWRSLLS 718
Query: 142 SCQVHSNVRLAKKA 155
+C + NV + + A
Sbjct: 719 ACHLFGNVEIGRYA 732
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ F ++L + S L L +QI IVK G D++ GSA I++Y
Sbjct: 438 PSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKFSLVDDAKLV 497
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN MI G A+NE E+A+ L+ + SG+ + TFVA++T S
Sbjct: 498 FSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVAS 552
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 17/126 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F + L +CA+ + G Q+ K G ++FVG+A +N+Y G
Sbjct: 135 PNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYAKAGRIDAAMSV 194
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW +I GY++ A+ L+ + GV+ D + + CS G V
Sbjct: 195 FDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFV 254
Query: 106 YAEVEI 111
+I
Sbjct: 255 EGGRQI 260
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P F T++L+SC L++++ GRQ+ ++K +D +V +A I++Y C
Sbjct: 337 PDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAV 396
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+++N MI GYA + A+ ++ + +K +TFV++L
Sbjct: 397 FEALAEDDAISYNAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLL 447
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F + S+C+ L + GRQI + +D V +A I++YC C
Sbjct: 234 VRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLLLAR 293
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY +N +A+S++ + +G + D +IL C
Sbjct: 294 RLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLA 353
Query: 104 LVYAEVEIFNSMEHDHEVK 122
++ ++ H H +K
Sbjct: 354 AIWQGRQV-----HAHVIK 367
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 96/202 (47%), Gaps = 48/202 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F T+L+ CA+L +L G+ I + ++ D+ VG+A I +Y CG
Sbjct: 426 IKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSL 485
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+W +I G A N +A+ L+ ++ G K D +TF+ +L+ CSH G
Sbjct: 486 EIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGG 545
Query: 104 LVYAEVEIFNSMEHDHEVKPKC--------------LMPYKDDLV-------------VW 136
LV FNSM+ H ++PK L+ ++L+ ++
Sbjct: 546 LVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLY 605
Query: 137 GDLVSSCQVHSNV----RLAKK 154
G L+S+C++H+NV RLAKK
Sbjct: 606 GALLSACRIHNNVDMGERLAKK 627
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY---------- 50
++P F + VL + L + G ++ IVK G D +V ++ I++Y
Sbjct: 193 LWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAK 252
Query: 51 -------CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCS 100
V+WN MI GY E AI+ ++++ G K D T V+ L+ C+
Sbjct: 253 KLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACT 310
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 58/148 (39%), Gaps = 47/148 (31%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKD-GYGN-------DIFVGSAPINI----- 49
P + + LS+C L +L LG +I + K+ G+ D++ +NI
Sbjct: 297 PDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIF 356
Query: 50 -----------------YCNCG-----------------VTWNEMIHGYAENEYVEQAIS 75
Y NCG V W MI+GY + + + A++
Sbjct: 357 DEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVA 416
Query: 76 LYKDIIASGVKHDGVTFVAILTPCSHSG 103
L++++ +K D T V +LT C+ G
Sbjct: 417 LFREMQIQKIKPDKFTVVTLLTGCAQLG 444
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 91/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + ++LS CA +L +G+ I K G D+ + +A I++Y CG
Sbjct: 329 VRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQ 388
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN M+ GY + Y E+A+ L+ ++ GVK + +TF+ L CSH+G
Sbjct: 389 RLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAG 448
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +F M HD + PK C+ MP ++ +WG +
Sbjct: 449 LVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAM 508
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C++H N + + AA
Sbjct: 509 LAACKIHKNSNMGELAA 525
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 63/120 (52%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+P +++ SC + ++ LG+++ I+++G+G + + +A +++Y CG
Sbjct: 228 VFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSAR 287
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TW MI YA+ ++ A L+ + +GV+ + +T V++L+ C+ +G
Sbjct: 288 AIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNG 347
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 39/139 (28%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F +VL +C+++S +G++I VK+G +D+FV +A + +Y CG
Sbjct: 110 FIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDK 169
Query: 55 ----------------------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86
V+W MI GY +E+ L+ +I V
Sbjct: 170 MSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVF 229
Query: 87 HDGVTFVAILTPCSHSGLV 105
+ +T ++++ C G V
Sbjct: 230 PNDITMLSLIISCGFVGAV 248
>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
Length = 797
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P + F + SC+ L SL GRQ+ ++V+ GY + + G+A I +Y CGV
Sbjct: 423 PCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCL 482
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN MI ++ QAI L+++++ G+ D ++F+ +++ CSH+GLV
Sbjct: 483 FINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLV 542
Query: 106 YAEVEIFNSMEHDHEVKPK-----------CL-------------MPYKDDLVVWGDLVS 141
+ F+SM + + V P C MP++ +W L++
Sbjct: 543 KEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLA 602
Query: 142 SCQVHSNVRLAKKAA 156
C++H N+ L +AA
Sbjct: 603 GCRIHGNIDLGIEAA 617
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
GV WN MI GYA +A +++ +I S ++ D TF ++++ C+++G
Sbjct: 254 GVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAG 303
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQI----LTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+F FT+V+S CA LG+++ L + + V +A I Y CG
Sbjct: 289 EFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQ 348
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN ++ GY +++A S + ++ + ++++ +++ + G
Sbjct: 349 EIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNI----LSWIIMISGLAQIG 404
Query: 104 LVYAEVEIFNSME 116
++ FN M+
Sbjct: 405 FAEEALKFFNRMK 417
>gi|242037437|ref|XP_002466113.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
gi|241919967|gb|EER93111.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
Length = 693
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 41/194 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F++ LSSCA L+ L GRQ+ +K G + G+A IN+Y CG
Sbjct: 404 PNDYAFSSGLSSCADLALLDQGRQLHCLALKLGCDFKVCTGNALINMYSKCGQIGSARLA 463
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +IHG A++ + + ++ +SG + D TF+A+L C+H+GLV
Sbjct: 464 FDVMNLHDVMSWNSLIHGLAQHGAANLVLEAFSEMCSSGWQPDDSTFIAVLVGCNHAGLV 523
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
F M + + P C+ MP++ D+++W L++
Sbjct: 524 KEGETFFRLMTDRYGLTPTPSHYACMIDMLGRNGRFDEALHMIKNMPFEPDVLIWKTLLA 583
Query: 142 SCQVHSNVRLAKKA 155
SC++H N+ + K A
Sbjct: 584 SCKLHKNLDIGKLA 597
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 17/94 (18%)
Query: 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTW-----------------NEMIHGYA 65
LG Q+ + V+ G+ D ++GS I +Y CG W ++
Sbjct: 128 LGEQVHSLAVRAGFAADAWIGSCLIELYSRCGSMWAAEEVFRRMEAPDVVGYTSLVSALC 187
Query: 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
N + +A+ + ++ G++ + T ++L C
Sbjct: 188 RNGDLARAVEVLCQMMRQGLQPNEHTMTSMLAEC 221
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 41/193 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
+ P + +VL SCA+L SL LG+ I + G+ V +A I +Y CGV
Sbjct: 237 IEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAI 296
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+W+ MI GYA + AI + ++ + VK +G+TF+ +L+ CSH G
Sbjct: 297 QLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVG 356
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+ + F+ M D++++PK CL MP K D +WG L
Sbjct: 357 MWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSL 416
Query: 140 VSSCQVHSNVRLA 152
+SSC+ N+ +A
Sbjct: 417 LSSCRTPGNLDVA 429
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F F + SCA L S +LG+Q+ + K G + +A I++Y
Sbjct: 107 PDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKV 166
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN ++ GYA +++A L+ ++ + V++ A+++ + G
Sbjct: 167 FDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTI----VSWTAMISGYTGIGCY 222
Query: 106 YAEVEIFNSME 116
++ F M+
Sbjct: 223 VEAMDFFREMQ 233
>gi|242077664|ref|XP_002448768.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
gi|241939951|gb|EES13096.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
Length = 598
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F T ++CA L+ L GR++ ++K G +DI V +A I++Y CG
Sbjct: 341 VMPNSYTFATSANACASLTDLDEGRKVHGYVIKLGDDSDIGVNNALIDMYAKCGSVACAH 400
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI G+A N ++A+ ++ D++ GV + VT + IL CS G
Sbjct: 401 KVFQSMQQRPVISWTAMIMGFAHNGRAQEAVEVFDDMLLKGVAPNRVTMICILYACSQGG 460
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
V FN+ME ++P C+ MP+ ++VW L
Sbjct: 461 FVDEGWIYFNAMEDKFGIQPGEDHYACMVDLLGKAGHIEEAEELISRMPFPPGVLVWQAL 520
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C H N + ++AA
Sbjct: 521 LGACHRHGNEAVGRRAA 537
Score = 51.2 bits (121), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY--------------- 50
F F+TVLS A +SL G Q+ ++VK G+G+D++VG++ + +Y
Sbjct: 245 FSFSTVLSGLAASTSLASGLQVHAQLVKSGFGDDVYVGNSLVEMYMKSKCLADGTMAFAE 304
Query: 51 --CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
C V+W M G +AI + ++ GV + TF C+
Sbjct: 305 IRCKDVVSWTGMAAGCLHCGEPSKAIGILSQMMLDGVMPNSYTFATSANACA 356
>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49740-like [Vitis vinifera]
Length = 729
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 94/196 (47%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + VLS CA +S+L G+QI I++ G + +G+A I +Y CG
Sbjct: 481 PNAYTLSIVLSICASISALRHGKQIHGYILRSGVFSVTSLGNALITMYAKCGDLDWSLRI 540
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSGL 104
V+WN MI YA++ ++A+ +K + SG VK D TF A+L+ CSH+GL
Sbjct: 541 FNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSACSHAGL 600
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL---------MPYKDDLV----------VWGDLV 140
V IFNSM +D+ +P C+ + + L+ +W L
Sbjct: 601 VDDGTRIFNSMVNDYGFEPGADHLSCIVDLLGRAGYLEEAERLINSKHLKIVSSIWWTLF 660
Query: 141 SSCQVHSNVRLAKKAA 156
S+C H N+RL + A
Sbjct: 661 SACAAHGNLRLGRIVA 676
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 18/98 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + +TT+LS+C KL + GY +F P I V WN +I
Sbjct: 117 PDVYSWTTLLSACTKLGQI-------------GYACHLF-NQTPRMI----PVVWNAIIT 158
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
G AEN++ E A++L++++ GV+HD TF ++L+ CS
Sbjct: 159 GCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLCS 196
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 20/115 (17%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
++ F +VLS C+ L L GR++ T ++K G+ V +A + +Y N G
Sbjct: 185 KYTFASVLSLCS-LELLDFGREVHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFE 243
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+T+N MI G A E+A+ ++K++ + ++ +TFV++++ CS
Sbjct: 244 EAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSCS 298
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 20/111 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT+ F +V+SSC SS + Q+ + +K G+ V +A + +Y +CG
Sbjct: 285 PTELTFVSVMSSC---SSARVSHQVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMV 341
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
++WN +I YA+ + AI + + +G++ D T ++L
Sbjct: 342 FDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLL 392
>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Brachypodium distachyon]
Length = 773
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 46/200 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P TV+S+CA L++L G + + + G +D+ + +A +++Y CG
Sbjct: 523 VKPNSSTLITVISACANLAALEHGELLHSYVKNMGLESDVSISTALVDMYTKCGQLGTAR 582
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI GY + QA+ L+ ++ A +K + +TF+AIL+ C H+G
Sbjct: 583 GIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSACCHAG 642
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV ++F M + ++P C+ MP K D VWG L
Sbjct: 643 LVDEGRKLFIRM-GGYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMPIKPDGGVWGTL 701
Query: 140 VSSCQVHSN----VRLAKKA 155
+S+C+VH N +R+AKKA
Sbjct: 702 LSACKVHDNFEMGLRVAKKA 721
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 19/112 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +SSC++L L LG+ + +K + S I +Y CG
Sbjct: 429 LVSAISSCSRLGRLRLGQSVHCYSIKCLLDENSITNSL-IGMYGRCGNFELACKIFAVAK 487
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTWN +I Y+ A+SLY ++ VK + T + +++ C++
Sbjct: 488 LRRDVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACAN 539
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 22/119 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT------ 56
P + L +C L L GR + VK+G + V SA ++Y C +T
Sbjct: 219 PNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACIL 278
Query: 57 -----------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
W +I Y +A+ L++++ SG++ D +L C SGL
Sbjct: 279 FPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPD-----EVLVSCVLSGL 332
>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
Length = 818
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
TQ +++VL +CA +S+ QI I K + ND +G++ I+ Y CG
Sbjct: 445 TQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVF 504
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++WN +I GYA + A+ L+ + S V+ + +TFVA+L+ C +GLV
Sbjct: 505 QHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVN 564
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
+ +F+SM DH +KP C+ +P +VW L+SS
Sbjct: 565 HGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSS 624
Query: 143 CQVHSNVRLAKKAA 156
C +H NV L + +A
Sbjct: 625 CIIHKNVALGRFSA 638
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 70/133 (52%), Gaps = 23/133 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ ++VL +C + L G+QI +K G+ +D+FVG+A ++ Y C
Sbjct: 341 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSL 400
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS--- 100
V+WN ++ G++++ E+A+S++ ++ A+ + VT+ ++L C+
Sbjct: 401 KIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTA 460
Query: 101 ---HSGLVYAEVE 110
H+G ++ +E
Sbjct: 461 SIRHAGQIHCSIE 473
>gi|147767158|emb|CAN71514.1| hypothetical protein VITISV_021786 [Vitis vinifera]
Length = 690
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 94/196 (47%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + VLS CA +S+L G+QI I++ G + +G+A I +Y CG
Sbjct: 442 PNAYTLSIVLSICASISALRHGKQIHGYILRSGVFSVTSLGNALITMYAKCGDLDWSLRI 501
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSGL 104
V+WN MI YA++ ++A+ +K + SG VK D TF A+L+ CSH+GL
Sbjct: 502 FNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSACSHAGL 561
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL---------MPYKDDLV----------VWGDLV 140
V IFNSM +D+ +P C+ + + L+ +W L
Sbjct: 562 VDDGTRIFNSMVNDYGFEPGADHLSCIVDLLGRAGYLEEAERLINSKHLKIVSSIWWTLF 621
Query: 141 SSCQVHSNVRLAKKAA 156
S+C H N+RL + A
Sbjct: 622 SACAAHGNLRLGRIVA 637
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 18/98 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + +TT+LS+C KL + GY +F P I V WN +I
Sbjct: 123 PDVYSWTTLLSACTKLGQI-------------GYACHLF-NQTPRMI----PVVWNAIIT 164
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
G AEN++ E A++L++++ GV+HD TF ++L+ CS
Sbjct: 165 GCAENKHTEIALNLFREMHQLGVRHDKYTFASVLSLCS 202
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 59/115 (51%), Gaps = 20/115 (17%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
++ F +VLS C+ L L GR++ T ++K G+ V +A + +Y N G
Sbjct: 191 KYTFASVLSLCS-LELLDFGREVHTLVIKTGFLVRASVINALLTMYFNSGKVADAYEVFE 249
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+T+N MI G A E+A+ ++K++ + ++ +TFV++++ CS
Sbjct: 250 EAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVMSSCS 304
>gi|302796316|ref|XP_002979920.1| hypothetical protein SELMODRAFT_111891 [Selaginella moellendorffii]
gi|300152147|gb|EFJ18790.1| hypothetical protein SELMODRAFT_111891 [Selaginella moellendorffii]
Length = 719
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TVLS+CA S++ GR + ++G +D+ V + ++ Y CG
Sbjct: 503 PDTVTLVTVLSACAAGSAIAKGRAVHRFAAENGLMSDVAVANGVVDFYGKCGCLLEARAV 562
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN ++ GYA++ Y + + + ++ G + +TF+++L CSH GLV
Sbjct: 563 LDKMAKLDEVTWNSLLAGYAQHGYGVETLEAFTEMQHRGYSANRITFMSVLHACSHVGLV 622
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+ F+SM D+ +P C+ MP+K +L+ W L+
Sbjct: 623 AEGCKYFSSMIGDYGFQPIEEHCGCMIDLLGRAGHLSEAKMLLARMPFKPNLIAWMSLLG 682
Query: 142 SCQVHSNVRLAKKAA 156
SC+VH N+ L + AA
Sbjct: 683 SCKVHGNLELGRDAA 697
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 17/119 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P++ F ++LS+C KL SL + I + G + + + + +Y CG
Sbjct: 124 VSPSRITFLSLLSACTKLGSLREASLVHDHIRQSGNQQGLSIQNGVVCMYHRCGSVENAK 183
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++W MI YA++ + AI LY+ + G K + VTF+A + C+ S
Sbjct: 184 LVFDAMPRRDVISWTSMIAAYAQSGSCDDAIRLYRRMELEGEKPNKVTFLAAMEACAKS 242
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 25/136 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P Q L+SC + + I + ++ V +A +N Y CG
Sbjct: 26 VLPNQIALVATLNSCLADHQVRSVHECAREIHCE---HEKIVATALLNAYGKCGDLESAG 82
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W +I GYA+ + QA+ LY++++ GV +TF+++L+ C+ G
Sbjct: 83 AIFRGMEERDLISWTALITGYAQFGHSRQALDLYREMLMDGVSPSRITFLSLLSACTKLG 142
Query: 104 LVYAEVEIFNSMEHDH 119
+ S+ HDH
Sbjct: 143 SLREA-----SLVHDH 153
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 21/117 (17%)
Query: 27 ILTRIVKDGYGNDIFVGSAPINIYCNCG------------------VTWNEMIHGYAENE 68
+L ++ + + +D V +A +N+Y CG ++WN +I +A+N
Sbjct: 319 LLEQMQRQSFESDSIVRNALMNMYGKCGCAEDALRLFEASPRLQNVISWNTVIAVHAQNG 378
Query: 69 YVEQAISLYKDIIASGVKHDGVTFVAILTPCSH-SGLVYAEV--EIFNSMEHDHEVK 122
++++ L+ + +GV D T + +L C++ + L + E+ + HEVK
Sbjct: 379 EHQRSMVLFHRMQLAGVPADRATLLTVLYACTNPAALRTGRIVRELATQRGYHHEVK 435
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 41/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---- 56
V PT+ ++LS+CA L +L +G I I D+ +G+A I++YC CG
Sbjct: 201 VKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAI 260
Query: 57 -------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN +I G N E+AI+ + + G+K DGVTFV IL+ CSHSG
Sbjct: 261 DVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSG 320
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L+ A F+ M + ++P C+ MP K + +V G L
Sbjct: 321 LLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSL 380
Query: 140 VSSCQVHSNVRLAKK 154
+ +CQ+H + +L ++
Sbjct: 381 LRACQIHKDTKLGEQ 395
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI Y + AIS+++ + + VK VT V++L+ C+H G
Sbjct: 171 VTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLG 219
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +VLS+CA L S+ G+ + + K+ D+ +G+A +N+Y CG
Sbjct: 261 VKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIECDVVIGTALVNMYGKCGDVQQAI 320
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
W MI +A + + ++A + ++ +GVK + VTFV +L+ CSHSG
Sbjct: 321 EIFNDMPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVKPNHVTFVGLLSACSHSG 380
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F+ M+ + ++P+ C+ MP K D+ VWG L
Sbjct: 381 LVEQGRCCFDVMKRVYSIEPQIYHYACMVDILSRARLFDEALFLIRSMPMKPDVYVWGAL 440
Query: 140 VSSCQVHSNVRLAKKAA 156
+ CQ+H N++L +K A
Sbjct: 441 LGGCQMHGNIKLGEKVA 457
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 33/174 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLS-SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
+ P F ++ C++L +G I ++K G+ ND+FVG++ I+++ N G
Sbjct: 124 IVPNNLTFPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNA 183
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN M+ GY N VE A++L++ + + +T+ +I+T +
Sbjct: 184 RKVFDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNI----ITWNSIITGLVQA 239
Query: 103 GLVYAEVEIFNSMEH---DHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAK 153
G +EIF+ M+ D VKP D + ++S+C + ++ K
Sbjct: 240 GHAKESLEIFHEMQFLSGDDVVKP--------DKITIASVLSACALLGSIDHGK 285
>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Glycine max]
Length = 618
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 42/193 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F ++ +S+CA L++L G+Q+ K G+G++I+V S+ I++Y CG
Sbjct: 246 FMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQG 305
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V WN MI G+A + +A+ L++ + G D VT+V +L CSH GL
Sbjct: 306 VLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEE 365
Query: 108 EVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDLVSSC 143
+ F+ M H + P L MP+ +WG L++SC
Sbjct: 366 GQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASC 425
Query: 144 QVHSNVRLAKKAA 156
+++ N+ A+ AA
Sbjct: 426 KIYGNIEFAEIAA 438
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC---------- 53
+F ++VL +CA ++ Q+ +K ++ FVG+A +++Y C
Sbjct: 143 NEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMF 202
Query: 54 -------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTW+ M+ GY +N + E+A+ ++++ G D + ++ C+
Sbjct: 203 ESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACA 256
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 17/107 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+L CAK S GR +I++ G DI + IN+Y C
Sbjct: 49 LLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKS 108
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I +N +A+ L + G + T ++L C+
Sbjct: 109 LVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCA 155
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 41/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---- 56
V PT+ ++LS+CA L +L +G I I D+ +G+A I++YC CG
Sbjct: 129 VKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAI 188
Query: 57 -------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN +I G N E+AI+ + + G+K DGVTFV IL+ CSHSG
Sbjct: 189 DVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSG 248
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L+ A F+ M + ++P C+ MP K + +V G L
Sbjct: 249 LLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSL 308
Query: 140 VSSCQVHSNVRLAKK 154
+ +CQ+H + +L ++
Sbjct: 309 LRACQIHKDTKLGEQ 323
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P++ F+ +L SCA LG +I+K G+ D+ + + ++ Y G
Sbjct: 26 VLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEAR 85
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTWN MI Y + AIS+++ + + VK VT V++L+ C+H
Sbjct: 86 NLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAH 145
Query: 102 SG 103
G
Sbjct: 146 LG 147
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG------- 54
P F + L +CA L++L +G+QI +++ +FV + I++Y CG
Sbjct: 475 PNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARL 534
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
VTW ++ GY + Y E+A+ +++++ G K DGVT + +L CSHSG+
Sbjct: 535 VFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGM 594
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLV 140
+ +E FN M+ D V P CL MP + VVW L+
Sbjct: 595 IDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALL 654
Query: 141 SSCQVHSNVRLAKKAA 156
S C++H V L + AA
Sbjct: 655 SCCRIHGKVELGEYAA 670
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 22/121 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLG--RQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
P + F V +C ++SS+ G L+R+ G+ +++FVG+A + +Y CG
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHALSRVT--GFMSNVFVGNALVAMYSRCGSLSDAR 182
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSHS 102
V+WN +I YA+ + A+ ++ + G + D +T V +L PC+
Sbjct: 183 KVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASV 242
Query: 103 G 103
G
Sbjct: 243 G 243
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 17/130 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P VL CA + + LG+Q V ++FVG+ +++Y G
Sbjct: 227 PDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTV 286
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN M+ GY++ E A+ L++ + +K D VT+ A ++ + GL
Sbjct: 287 FSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLG 346
Query: 106 YAEVEIFNSM 115
Y + + M
Sbjct: 347 YEALGVCRQM 356
Score = 40.8 bits (94), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
VTW+ I GYA+ +A+ + + +++SG+K + VT +++L+ C+ G + EI
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEI 387
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 26/107 (24%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQI-------LTRIVKDGYGNDIFVGSAPINIYCNC 53
+ P + +VLS CA + +L G++I + K+G+G++ V + I++Y C
Sbjct: 361 IKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKC 420
Query: 54 G-------------------VTWNEMIHGYAENEYVEQAISLYKDII 81
VTW MI GY+++ +A+ L ++
Sbjct: 421 KKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMF 467
>gi|242072866|ref|XP_002446369.1| hypothetical protein SORBIDRAFT_06g014910 [Sorghum bicolor]
gi|241937552|gb|EES10697.1| hypothetical protein SORBIDRAFT_06g014910 [Sorghum bicolor]
Length = 474
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P VLS CA+L +L G+++ I ++F+ + +++Y CG
Sbjct: 227 PDSVALVAVLSCCAQLGALDKGQEVHEYIKLSRTSPNVFLCTGLVDLYAKCGCVEEAREV 286
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TWN +I G A + + A+ + ++A G++ DGVTF+ +L CSH+GLV
Sbjct: 287 FEACQDRNVFTWNALIVGLAMHGHGTVALEYFNQMLADGIQSDGVTFLGVLIACSHNGLV 346
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
IF+ ME H V + C+ MP + D VWG +++
Sbjct: 347 DMARRIFSDMESKHNVHRELKHYGCMADLLGRAGLIEEAMDMVRKMPMEGDSYVWGGILA 406
Query: 142 SCQVHSNVRLAKKAA 156
C++H NV A+ AA
Sbjct: 407 GCRMHRNVEAAEVAA 421
>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
Length = 732
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F F ++++ + L+SL G+Q ++VK G FV +A +++Y CG
Sbjct: 439 PNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKM 498
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI +A++ E+A+ ++++++ G++ + VTFVA+L+ CSH+G V
Sbjct: 499 FNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGXV 558
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+ FNSM +KP C+ MP + +VW L+S
Sbjct: 559 EDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLS 617
Query: 142 SCQVHSNVRLAKKAA 156
+C++ NV L K AA
Sbjct: 618 ACRIAGNVELGKYAA 632
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ F ++L A L +L L +QI I+K G D+F GSA I++Y C
Sbjct: 338 PSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHV 397
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN M GY ++ E+A+ LY + S K + TF A++T S+
Sbjct: 398 FEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASN 453
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ ++VLS+C+ L L G+QI +++ G D+ V + I+ Y C
Sbjct: 134 VVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGR 193
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++W MI GY +N + +A+ L+ ++ G K DG ++LT C
Sbjct: 194 KLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSC 249
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P +F +V+ +C +L + G Q+ +V+ G+ D++VG++ I+ Y G
Sbjct: 34 HPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARL 93
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTW +I GY + ++ L+ + + V D ++L+ CS
Sbjct: 94 VFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACS 149
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F T+VL+SC L +L GRQ+ +K ++ FV + I++Y
Sbjct: 237 PDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKV 296
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+++N MI GY+ E + +A+ L+ ++ +TFV++L
Sbjct: 297 FDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLL 347
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 42/188 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++L++CA+ SL LG++I + K G V +A I+++C CG
Sbjct: 204 SILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQ 263
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I G+A + + ++A+ L+ + G D VT + +L+ C+H G V
Sbjct: 264 KDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRH 323
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F++ME D+ + P+ C+ MP++ + V+WG L+S+C++H
Sbjct: 324 FSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHK 383
Query: 148 NVRLAKKA 155
NV A+ A
Sbjct: 384 NVEYAEIA 391
>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
Length = 551
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++VL C+ LS+L G+QI +K ++ VG++ +++YC CG
Sbjct: 237 VQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSAC 296
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ ++AI+L++ + GV+ + +TFVA+LT C H+G
Sbjct: 297 KLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTG 356
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L + F M+ + ++P+ C+ MP++ +G L
Sbjct: 357 LCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTL 416
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+V+ N+ A+ AA
Sbjct: 417 LAACRVYKNLEFAELAA 433
>gi|29893615|gb|AAP06869.1| chloroplast import-associated channel protein homolog [Oryza sativa
Japonica Group]
Length = 1273
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P+ +T+L + A ++ + G+++ V G ++ V SA +++Y CG
Sbjct: 1022 VLPSSATISTILPAFANVADVKHGKEVHGYSVVAGVEQELTVSSALVDMYAKCGLVLEAR 1081
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI G A + + ++A+ L+ ++ G K D +TF A+LT CS+ G
Sbjct: 1082 RLFDKMPQRSTVTWNSMIFGLANSGHCQEAVGLFDRMLRDGAKPDHLTFTAVLTACSYGG 1141
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V ++ +M+ ++ V+P+ C+ MP + D VWG L
Sbjct: 1142 MVEVGKILYRAMQVEYGVEPRLEHYACMVHLLGRAGRLDEAYGFIRAMPLEPDRFVWGAL 1201
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ H N+ LA+ AA
Sbjct: 1202 LGACRSHGNIELAELAA 1218
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 30/159 (18%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIV-KDGYGNDIFVGSAPINIYCNCG------ 54
+P P T L +CA L+ + GR I ++ + +D +A +++Y CG
Sbjct: 850 WPGAVP--TALRACAHLADVASGRLIHALVLTRPALASDAVAATALLDMYSKCGLVASAR 907
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V WN ++ YA + E A++L + G+ D VT+ +++ + +
Sbjct: 908 KVFDEMASRGDPVVWNALLACYARHGLPEHALALAVKMRGIGLCPDLVTWNIVVSGFALA 967
Query: 103 GLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
G ++ +M+ D ++ D+V W VS
Sbjct: 968 GDDLMAGDLVGAMKDDG---------FQPDVVTWTSRVS 997
>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65570-like [Glycine max]
Length = 676
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 40/194 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +++L +C+ L+ L +G QI +K G + + G+A IN+Y CG
Sbjct: 300 ISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKAR 359
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V N MI+ YA+N + +A+ L++ + G+ +GVTF++IL C+++G
Sbjct: 360 SVFDVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAG 419
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCLMPY------------------KDDLVVWGDLV 140
LV +IF S+ ++H ++ C++ D+V+W L+
Sbjct: 420 LVEEGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVRNPDVVLWRTLL 479
Query: 141 SSCQVHSNVRLAKK 154
+SC++H V +A+K
Sbjct: 480 NSCKIHGEVEMAEK 493
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
++++++ A SL R + T ++K G+ F+G I+ Y CG
Sbjct: 4 YSSLIAQSAHTKSLTTLRAVHTNVIKSGFSYS-FLGHKLIDGYIKCGSLAEARKLFDELP 62
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN MI + + ++A+ Y +++ GV D TF AI S GL+
Sbjct: 63 SRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLI 117
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ +L +C L L G+ I +VK G + + ++ + +Y C
Sbjct: 199 VKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSI 258
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTW + G +N E A+S+++++I + + T +IL CS
Sbjct: 259 KVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACS 315
>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
Length = 613
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++VL C+ LS+L G+QI +K ++ VG++ +++YC CG
Sbjct: 237 VQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSAC 296
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ ++AI+L++ + GV+ + +TFVA+LT C H+G
Sbjct: 297 KLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTG 356
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L + F M+ + ++P+ C+ MP++ +G L
Sbjct: 357 LCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTL 416
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+V+ N+ A+ AA
Sbjct: 417 LAACRVYKNLEFAELAA 433
>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g25970-like [Cucumis
sativus]
Length = 704
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV--------- 55
+ F+ VL SC+ L++ LG+QI +K G ++ FV S+ I +Y CG+
Sbjct: 405 HYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFE 464
Query: 56 --------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
TWN ++ GYA++ A+ L+ + VK D +TFVA+LT CSH GLV
Sbjct: 465 EASKNSSITWNALMFGYAQHGQCNVALDLFFLMEXKKVKMDHITFVAVLTACSHIGLVEQ 524
Query: 108 EVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSC 143
+ ME D+ V P+ C MP+K D VW + +C
Sbjct: 525 GCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFLGAC 584
Query: 144 QVHSNVRLAKKAA 156
+ N+ LA + A
Sbjct: 585 RSCGNIELACQVA 597
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 28/139 (20%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC----------- 53
++ F ++L A LG+Q+ + I+K GY +++ GSA +++Y C
Sbjct: 99 RYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFL 158
Query: 54 ------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI-----------L 96
V+WN MI+GYA+ E A L + G K D T+ + L
Sbjct: 159 SISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNL 218
Query: 97 TPCSHSGLVYAEVEIFNSM 115
T H ++ +E+ N+M
Sbjct: 219 TSQLHGKIIKHGLELVNTM 237
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +T+++S+C + GR + ++K G+ + + +A I++Y
Sbjct: 300 PDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEAL 359
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN ++ G ++ E A+ + + ++ + D +F A+L CS
Sbjct: 360 CIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCS 416
>gi|226507810|ref|NP_001148280.1| selenium-binding protein [Zea mays]
gi|195617122|gb|ACG30391.1| selenium-binding protein [Zea mays]
Length = 504
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 49/191 (25%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGR----QILTRIVKDGYGNDIFVGSAPINIYCNCGV--- 55
P Q F +L++ A+L +L LG+ Q+LTR + + +G+A +N+Y CG
Sbjct: 207 PNQTTFVVMLTAAAELGNLALGKWAHGQVLTRRID----MTLQLGTAVVNMYTKCGEVSY 262
Query: 56 --------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
TW+ MI GY++N V +A+ L+ + + V + VTF+ +L CSH
Sbjct: 263 ASCLFENMAARNVWTWSAMIMGYSQNGMVREALELFDRMKDASVAPNYVTFLGLLCGCSH 322
Query: 102 SGLVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWG 137
+GLV + F+ MEH + +KP MP + D VVW
Sbjct: 323 AGLVNEGRKFFHEMEHVYGIKPMMTHYSAMVDVLGRNGLLQEAFEFVVDMPVEADTVVWR 382
Query: 138 DLVSSCQVHSN 148
L+S+CQ+HS+
Sbjct: 383 TLLSACQLHSS 393
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 95/196 (48%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + +TV+S+CA L L +G+++ +++G+ D+++GSA +++Y CG
Sbjct: 1028 IIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERAL 1087
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN +I G A + + ++A+ ++ + VK + VTFV++ T C+H+G
Sbjct: 1088 LVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAG 1147
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDL 139
LV I+ SM D+ + M ++ + V+WG L
Sbjct: 1148 LVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGAL 1207
Query: 140 VSSCQVHSNVRLAKKA 155
+ C++H N+ +A+ A
Sbjct: 1208 LDGCRIHKNLVIAEIA 1223
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI GY++N+ +AI+++ ++ G+ D VT +++ C+H G++
Sbjct: 998 ISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVL 1048
>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
Length = 1029
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 96/198 (48%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V + F +VL +C+++++L G++I I+K G+ + SA +++Y CG
Sbjct: 729 VRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYETAASALMDMYSKCGDVISSF 788
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+ WN MI G+A+N Y +A+ L++ + S +K D VT + +L CSH+
Sbjct: 789 EIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVTLLGVLIACSHA 848
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GL+ +F+SM + + P+ CL +P++ D V+W
Sbjct: 849 GLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVIDQLPFRADGVIWAT 908
Query: 139 LVSSCQVHSNVRLAKKAA 156
+++CQ+H + K AA
Sbjct: 909 FLAACQMHKDEERGKVAA 926
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT+ F ++LS+ A +++ G+QI VK G ++FVGS+ IN+Y G
Sbjct: 323 LMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAK 382
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V WN M++G+ +N+ E+ I +++ + + ++ D TFV++L C
Sbjct: 383 KVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGAC 438
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 17/113 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F +VL +C L SL +GRQ+ +K+ D+FV +A +++Y G
Sbjct: 429 FTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSL 488
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I G A NE E+A+ + K + G+ D V+F + CS+
Sbjct: 489 IPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSN 541
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P QF VLS+C++L +L GRQ+ ++K G+ + F + +++Y C
Sbjct: 158 PDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYAKCVEVKDARRV 217
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ W MI GY +QA++L+ + G D VT+V I++ + G
Sbjct: 218 FDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTIISTLASMG 275
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG------- 54
P+ F F ++LS C S +G+Q+ + +K N D +G + + IY C
Sbjct: 628 PSNFTFASILSGCTGPVSSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANK 687
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W I GYA+N Y +Q++ ++ + + V+ D TF ++L CS
Sbjct: 688 LLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACS 744
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F T +++C+ + + G+QI +K ++ VGS+ I++Y G
Sbjct: 525 IAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSR 584
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V N +I G +N ++AI L++ ++ G K TF +IL+ C+
Sbjct: 585 KVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCT 641
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 18/98 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P Q + T++S+ A + L R +L RI P V WN +I
Sbjct: 259 PDQVTYVTIISTLASMGRLSDARTLLKRI------------QMPST------VAWNAVIS 300
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
Y+++ + LYKD+ G+ TF ++L+ +
Sbjct: 301 SYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAA 338
>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
Length = 662
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++VL C+ LS+L G+QI +K ++ VG++ +++YC CG
Sbjct: 286 VQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSAC 345
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ ++AI+L++ + GV+ + +TFVA+LT C H+G
Sbjct: 346 KLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTG 405
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L + F M+ + ++P+ C+ MP++ +G L
Sbjct: 406 LCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTL 465
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+V+ N+ A+ AA
Sbjct: 466 LAACRVYKNLEFAELAA 482
>gi|297843734|ref|XP_002889748.1| hypothetical protein ARALYDRAFT_471032 [Arabidopsis lyrata subsp.
lyrata]
gi|297335590|gb|EFH66007.1| hypothetical protein ARALYDRAFT_471032 [Arabidopsis lyrata subsp.
lyrata]
Length = 595
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 94/179 (52%), Gaps = 26/179 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT +VLS CA L+SL G+Q+ ++V+ + D++V S + +Y CG
Sbjct: 277 VRPTFPTLISVLSVCASLASLHHGKQVHAQLVRCQFDVDLYVASVLMTMYIKCGELLKSK 336
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHS 102
+ WN +I GYA + E+A+ ++ ++ SG + + VTFVA L+ CS++
Sbjct: 337 LIFDRFPSKDIIMWNSIISGYASHSLGEEALKIFYEMPLSGSTEPNEVTFVATLSACSYA 396
Query: 103 GLVYAEVEIFNSMEH--------DHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAK 153
G+V ++IF SME + ++ M + D VWG L+ +C+ HS + LA+
Sbjct: 397 GMVEEGLKIFESMESVLGRAGRFNEAMEMIDSMIVEPDAAVWGSLLGACRTHSQLDLAE 455
>gi|413954745|gb|AFW87394.1| hypothetical protein ZEAMMB73_238054 [Zea mays]
Length = 430
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 43/197 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P QF F +VL +CA+L++L GR++ VK G ++F SA +++Y C
Sbjct: 136 PDQFTFASVLCACARLAALGHGRRVHGVAVKSDVGGNVFANSALVDMYLKCSCPEDARRV 195
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
W +I G+ + V++A++ + + ASG + + VTF+A+L+ C+H GLV
Sbjct: 196 FAAAPERNVTMWTAVISGHGQQGCVDEALAFFDRMAASGFRPNDVTFLAVLSACAHGGLV 255
Query: 106 YAEVEIFNSMEHDHEVKP-------------------------KCLMPYKDDLVVWGDLV 140
+ F+SM D+ + P K L ++ VVWG ++
Sbjct: 256 GEGLRRFSSMSSDYGLTPRGPHYAAVVDMLARVGRLHDAYELVKNLPDCQEHSVVWGAIL 315
Query: 141 SSCQVH-SNVRLAKKAA 156
+C+ H +V L + AA
Sbjct: 316 GACRKHGGDVELVELAA 332
>gi|224135801|ref|XP_002327307.1| predicted protein [Populus trichocarpa]
gi|222835677|gb|EEE74112.1| predicted protein [Populus trichocarpa]
Length = 527
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 92/195 (47%), Gaps = 44/195 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F+ VL +CA + + +++VK G+ +D + + I+ Y CG
Sbjct: 152 PDWCTFSIVLKACAGFVTERHALAVYSQVVKAGFEDDRVLANTLIHAYARCGSISFSKQV 211
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI YA + ++A+ L+ ++ V+ D T VA+L+ CSH+GLV
Sbjct: 212 FDKMRSRDVVSWNSMIKAYALHGQAKEALHLFSEM---NVRPDSATMVALLSACSHAGLV 268
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ IF+SM +H V P+ C+ MP K D VVW L+S
Sbjct: 269 EEGINIFDSMSMNHGVSPQLDHYACMVDILGRAGLLLEAGELISRMPMKPDSVVWSALLS 328
Query: 142 SCQVHSNVRLAKKAA 156
SC+ + +LAK AA
Sbjct: 329 SCRKYGETQLAKLAA 343
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 31/133 (23%)
Query: 2 YPTQFPFTTVLSSC---------------AKLSSLFLGRQILTRIVKDGYGNDIFVGSAP 46
YP +F F +V+ SC ++S+++G ++TR K N + GS
Sbjct: 54 YPNEFAFASVIISCDYVCGKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEA 113
Query: 47 INIYCNCG----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS-- 100
++ + V+WN MI E+A+ L++ + G+ D TF +L C+
Sbjct: 114 CRVFESMEFRNLVSWNSMIAAE------EEALLLFRQLYREGLAPDWCTFSIVLKACAGF 167
Query: 101 ----HSGLVYAEV 109
H+ VY++V
Sbjct: 168 VTERHALAVYSQV 180
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + VLS+CA L SL LG +I + + G + + +A I++Y G
Sbjct: 246 VEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKAL 305
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW +I G A + + +A++++ ++ +GV+ + VTF+AIL+ CSH G
Sbjct: 306 DVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVG 365
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
V +FNSM + + P C+ MP+K + +WG L
Sbjct: 366 WVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSL 425
Query: 140 VSSCQVHSNVRLAKKA 155
+++ VH ++ L ++A
Sbjct: 426 LAASNVHHDLELGERA 441
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 50/151 (33%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F VL ++S ++ GRQI ++V G+ + + V + I +Y +CG
Sbjct: 114 PDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKM 173
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V+W +I GYA++ +
Sbjct: 174 FDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASE 233
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
AI +++ ++ V+ D VT +A+L+ C+ G
Sbjct: 234 AIEVFQRMLMENVEPDEVTLLAVLSACADLG 264
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 41/191 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F ++LSSCA + +L +G Q+ + +IFVG+A I++Y CG
Sbjct: 603 FTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSIFNS 662
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
TWN MI GY + ++AI+ + ++ +GV+ + +TF+ +L CSH GLV
Sbjct: 663 MPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSITFLGLLCGCSHQGLVKEG 722
Query: 109 VEIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQ 144
V+ F+ M + +KP C++ P + D V+W L+ SC+
Sbjct: 723 VQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSSPSQHDPVLWRTLLGSCK 782
Query: 145 VHSNVRLAKKA 155
+H NV + + A
Sbjct: 783 IHRNVEIGEMA 793
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 17/126 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F+ +L +C + R++ I++ GY D+ + + I Y G
Sbjct: 499 PDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCTNLIRSYAGNGLIETAHKV 558
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI Y + E+A+ +Y + S V DG T V++L+ C+H G +
Sbjct: 559 FEEMPARDLVSWNSMISCYCQTGLHEEALKMYDQMRISNVGFDGFTLVSLLSSCAHVGAL 618
Query: 106 YAEVEI 111
+ V++
Sbjct: 619 HMGVQM 624
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 41/193 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + VLS+ ++ L +G+ + I + Y D+ + ++ +++Y CG
Sbjct: 343 PDEITLVAVLSASGRIGDLTVGKMVHLYIRDNIYNPDVSLVNSLLDMYAKCGQVDTAISL 402
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I G A + I+ ++ ++ DG+TFVA+L+ CSH GL+
Sbjct: 403 FSEMCNRNVVSWNVIIGGLAMHGRALDTITFFRSMVTDSFAPDGITFVALLSACSHGGLL 462
Query: 106 YAEVEIFNSMEH----DHEV-----------------KPKCL---MPYKDDLVVWGDLVS 141
F SM H HEV K CL MP K D+VVWG L+
Sbjct: 463 ETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLG 522
Query: 142 SCQVHSNVRLAKK 154
+C++H NV++ ++
Sbjct: 523 ACRIHGNVKIGRQ 535
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F V+ +C + + ++ G +FVG+A ++ Y + G
Sbjct: 108 ILPNEFTLPFVVKACTIAQAREHALAVHGVALRLGLVGQVFVGNALLHSYASAGSLGDSR 167
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GYA+ + SL+ ++ G D T V++L CS G
Sbjct: 168 RFFDEMVDRNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEG 227
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 56/147 (38%), Gaps = 48/147 (32%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F ++L +C++ +L +GR + R++ G D+ + SA +++Y CG
Sbjct: 213 EFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILESALVDMYGKCGDLWMARRCFE 272
Query: 55 --------------------------------------VTWNEMIHGYAENEYVEQAISL 76
V+WN MI Y + +A+ L
Sbjct: 273 MMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIVSWNAMISCYVQRGQCHEALDL 332
Query: 77 YKDIIASGVKHDGVTFVAILTPCSHSG 103
Y + + G+ D +T VA+L+ G
Sbjct: 333 YNQMQSQGLAPDEITLVAVLSASGRIG 359
>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
Length = 785
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P VL +C+ L++L G ++ G+ D + +A I++Y CG
Sbjct: 411 PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREV 470
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI GY + +A+ L+ D++A G+K D +TF+ +L+ CSHSGLV
Sbjct: 471 FNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLV 530
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F++M D + P+ C+ MP++ D+ +W L+S
Sbjct: 531 MEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLS 590
Query: 142 SCQVHSNVRLAKKAA 156
+C++H N+ L ++ +
Sbjct: 591 ACRIHKNIELGEEVS 605
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT +VL +CAKL+ L GR++ I+K G DI +G+ +++Y CG
Sbjct: 310 PTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRF 369
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+++ ++ G +N A+S+++ + SG+ D T + +L CSH
Sbjct: 370 FDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSH 425
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 31/165 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ + VL +C+ L ++ G +I + G +D+FV +A ++ Y CG
Sbjct: 105 VRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQ 164
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI G + + A+ L + G+ + T V +L +
Sbjct: 165 RLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEA- 223
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG----DLVSSCQ 144
++ H + C+ D+ VV G D+ + CQ
Sbjct: 224 ---------KALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQ 259
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +L +C + SL ++I +K+ D V +Y +C
Sbjct: 11 YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+ WN++I YA N + AI LY ++ GV+ + T+ +L CS + VE
Sbjct: 71 NPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVE 130
Query: 111 I 111
I
Sbjct: 131 I 131
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P VL + + +L G+ + V+ + N + VG+ +++Y C
Sbjct: 206 ICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYAR 265
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKD-IIASGVKHDGVTFVAILTPCS 100
V+W+ MI GY ++ +++A+ L+ I+ + VT ++L C+
Sbjct: 266 KIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACA 323
>gi|255552816|ref|XP_002517451.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543462|gb|EEF44993.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 428
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 94/197 (47%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F TT L++CAK +L+ G+ I + K G D+F+G+A +++Y CG
Sbjct: 126 VEPDEFCVTTALAACAKSGALWQGKWIHEYVKKTTLGFDVFIGTALVDMYAKCGWINMAV 185
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSHS 102
+W MI GYA + Y +AI + + A G++ DGV + +LT C+H+
Sbjct: 186 QVFEEMPKRSAFSWAAMIGGYAIHGYAREAIHYLERMHAEDGLRPDGVVLLGVLTACTHA 245
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GL + ++M+ + + P+ C+ MP K VWG
Sbjct: 246 GLQEEGRFLLDNMKARYGIVPRHEHYSCVVDLLCRAGRWDEALALIKRMPMKPLASVWGA 305
Query: 139 LVSSCQVHSNVRLAKKA 155
++SSC+ H N LA+ A
Sbjct: 306 VLSSCRTHKNAELAEFA 322
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---- 56
+ P++F ++L++CA L +L G I IVK+ + + V +A I++Y CG
Sbjct: 225 IKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKAL 284
Query: 57 -------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN +I G A + +A+ L+ + +S +K D V+F+ +LT C+H+G
Sbjct: 285 QVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAG 344
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
+V + F M ++++P C+ MP D ++WG L
Sbjct: 345 MVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSL 404
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC+ + N+ +AK+AA
Sbjct: 405 LSSCREYGNIEMAKQAA 421
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 67/138 (48%), Gaps = 22/138 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + +V + A+L G Q+ R++K G ND F+ + +N+Y NCG
Sbjct: 95 PQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRI 154
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN MI G A+ ++++ L+ ++ + V++ ++++ G
Sbjct: 155 FDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLL----RNTVSWNSMISGYVRKGRF 210
Query: 106 YAEVEIFNSMEHDHEVKP 123
+ +E+F+ M+ + +KP
Sbjct: 211 FEAMELFSRMQEEG-IKP 227
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 41/186 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
VL++CA L +L LG + ++ + ++I + ++ I++Y CG
Sbjct: 232 AVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKR 291
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIF 112
V+WN +I G+A N + ++++ + + G K DGV++ LT CSH+GLV +E+F
Sbjct: 292 TLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELF 351
Query: 113 NSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSN 148
++M+ H++ P+ C+ MP K + VV G L+++C+ H +
Sbjct: 352 DNMKSVHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGD 411
Query: 149 VRLAKK 154
V LA++
Sbjct: 412 VNLAER 417
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 55/156 (35%)
Query: 1 VYPTQFPFTTVLSSCAKL--SSLFLGRQILTRIVKDGYGND---IFVGSAPINIYCNCG- 54
V P F T+LS+CA S F + K YG D + VG+A I++Y C
Sbjct: 88 VEPNHITFITLLSACADFPSESFFFASSLHGYACK--YGLDTGHVMVGTALIDMYSKCAQ 145
Query: 55 ----------------VTWNEMIHGYAENEYVEQAISLY-----KDIIA----------- 82
V+WN M++G+ N +E AI L+ +D I+
Sbjct: 146 LGHARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKH 205
Query: 83 ---------------SGVKHDGVTFVAILTPCSHSG 103
SGV D V+ +A+L C+ G
Sbjct: 206 GYSEQALECFHQMQRSGVAADYVSIIAVLAACADLG 241
>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Cucumis sativus]
Length = 704
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 89/193 (46%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV--------- 55
+ F+ VL SC+ L++ LG+QI +K G ++ FV S+ I +Y CG+
Sbjct: 405 HYSFSAVLRSCSDLATFQLGQQIHVLALKYGLESNEFVSSSLIFMYSKCGIIEDARRSFE 464
Query: 56 --------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
TWN ++ GYA++ A+ L+ + VK D +TFVA+LT CSH GLV
Sbjct: 465 EASKNSSITWNALMFGYAQHGQCNVALDLFFLMEEKKVKMDHITFVAVLTACSHIGLVEQ 524
Query: 108 EVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSC 143
+ ME D+ V P+ C MP+K D VW + +C
Sbjct: 525 GCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEAKALIEEMPFKPDTTVWKTFLGAC 584
Query: 144 QVHSNVRLAKKAA 156
+ N+ LA + A
Sbjct: 585 RSCGNIELACQVA 597
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 28/139 (20%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC----------- 53
++ F ++L A LG+Q+ + I+K GY +++ GSA +++Y C
Sbjct: 99 RYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCEKLEDAYLSFL 158
Query: 54 ------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI-----------L 96
V+WN MI+GYA+ E A L + G K D T+ + L
Sbjct: 159 SISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLPLLDDADFCNL 218
Query: 97 TPCSHSGLVYAEVEIFNSM 115
T H ++ +E+ N+M
Sbjct: 219 TSQLHGKIIKHGLELVNTM 237
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +T+++S+C + GR + ++K G+ + + +A I++Y
Sbjct: 300 PDLYSYTSIISACFNENISNNGRSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEAL 359
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN ++ G ++ E A+ + + ++ + D +F A+L CS
Sbjct: 360 CIFESLEFKDRVSWNSILTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCS 416
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + +V+++ A+LS + I ++++ ++FV +A +++Y CG
Sbjct: 434 VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIAR 493
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN MI GY + + A+ L++++ ++ +GVTF+++++ CSHSG
Sbjct: 494 LIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSG 553
Query: 104 LVYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDL 139
LV A ++ F+ M+ ++ ++P MP K + V+G +
Sbjct: 554 LVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAM 613
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +CQ+H NV A+K A
Sbjct: 614 LGACQIHKNVNFAEKVA 630
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ +VL + + L + +G++I ++ G+ + + + +A +++Y CG
Sbjct: 234 PSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLL 293
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI Y +NE ++A+ +++ ++ GVK V+ + L C+ G
Sbjct: 294 FDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLG 351
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + FT +L C + L +G++I +VK G+ D+F + N+Y C
Sbjct: 131 VEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEAR 190
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN ++ GY++N A+ + + +K +T V++L S
Sbjct: 191 KVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALR 250
Query: 104 LVYAEVEI 111
L+ EI
Sbjct: 251 LIRIGKEI 258
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT L +CA L L GR I V+ ++ V ++ I++YC C
Sbjct: 333 VKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAA 392
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI G+A+N +A++ + + A VK D T+V+++T
Sbjct: 393 SMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVIT 446
>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
[Vitis vinifera]
Length = 785
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P VL +C+ L++L G ++ G+ D + +A I++Y CG
Sbjct: 411 PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREV 470
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI GY + +A+ L+ D++A G+K D +TF+ +L+ CSHSGLV
Sbjct: 471 FNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLV 530
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F++M D + P+ C+ MP++ D+ +W L+S
Sbjct: 531 MEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLS 590
Query: 142 SCQVHSNVRLAKKAA 156
+C++H N+ L ++ +
Sbjct: 591 ACRIHKNIELGEEVS 605
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT +VL +CAKL+ L GR++ I+K G DI +G+ +++Y CG
Sbjct: 310 PTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRF 369
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+++ ++ G +N A+S+++ + SG+ D T + +L CSH
Sbjct: 370 FDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSH 425
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 66/165 (40%), Gaps = 31/165 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ + VL +C+ L ++ G +I + G +D+FV +A ++ Y CG
Sbjct: 105 VRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQ 164
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI G + + A+ L + G+ + T V +L +
Sbjct: 165 RLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEA- 223
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG----DLVSSCQ 144
++ H + C+ D+ VV G D+ + CQ
Sbjct: 224 ---------KALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQ 259
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 25/132 (18%)
Query: 3 PTQFP----FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---- 54
P +F + +L +C + SL ++I +K+ D V +Y +C
Sbjct: 2 PLRFEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVL 61
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+ WN++I YA N + AI LY ++ GV+ + T+ +L C
Sbjct: 62 ARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKAC-- 119
Query: 102 SGLVYAE--VEI 111
SGL+ E VEI
Sbjct: 120 SGLLAIEDGVEI 131
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P VL + + +L G+ + V+ + N + VG+ +++Y C
Sbjct: 206 ICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYAR 265
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKD-IIASGVKHDGVTFVAILTPCS 100
V+W+ MI GY ++ +++A+ L+ I+ + VT ++L C+
Sbjct: 266 KIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACA 323
>gi|147818972|emb|CAN67116.1| hypothetical protein VITISV_026465 [Vitis vinifera]
Length = 1817
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT T++L++C L+ L GRQ+ + + K G +++FV SA +++Y CG
Sbjct: 1515 LXPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEAR 1574
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPCSHS 102
V W MI GYA++ + + L++ ++ G D + F A+LT C+H+
Sbjct: 1575 CVFXQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVXEEGFTPDHICFTAVLTACNHA 1634
Query: 103 GLVYAEVEIFNSMEHD---------------------HEVKPKCLM---PYKDDLVVWGD 138
G + ++ FN M D H K K LM P + + V+WG
Sbjct: 1635 GFLDKGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAKELMEAXPXEPNSVMWGS 1694
Query: 139 LVSSCQVHSNVRLAKKAA 156
+SSC+++ L ++AA
Sbjct: 1695 FLSSCKLYGEAELGREAA 1712
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 75/137 (54%), Gaps = 21/137 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT+F T L+SCAKL + LG QI RI++ G+ +++F+ SA +++Y C
Sbjct: 1314 PTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSALVDLYAKCDAIVDAKRV 1373
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W +I G+++N ++AI +K+++ S +K + VT+V+ ++ C+ +
Sbjct: 1374 FDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCVTYVSXISACTGLETI 1433
Query: 106 YAEVEIFNSMEHDHEVK 122
+ + + H H VK
Sbjct: 1434 FDQCALL----HAHVVK 1446
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 18/117 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQIL-TRIVKDGYGNDIFVGSAPINIYCNCG----- 54
+ P + + +S+C L ++F +L +VK G+G FV S I+ Y CG
Sbjct: 1413 IKPNCVTYVSXISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQA 1472
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
+ +N MI GY++N E+A+ L+ ++ +G+ T +IL C
Sbjct: 1473 VLLFGTTIERDNILFNSMISGYSQNLXGEEALKLFVZMRNNGLXPTDHTLTSILNAC 1529
>gi|225468012|ref|XP_002270478.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 602
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT T++L++C L+ L GRQ+ + + K G +++FV SA +++Y CG
Sbjct: 302 PTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCV 361
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPCSHSGL 104
V W MI GYA++ + + L++ ++ G D + F A+LT C+H+G
Sbjct: 362 FDQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVTEEGFTPDHICFTAVLTACNHAGF 421
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
+ ++ FN M D+ + P CL +P + + V+WG +
Sbjct: 422 LDKGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAKELMEAIPCEPNSVMWGSFL 481
Query: 141 SSCQVHSNVRLAKKAA 156
SSC+++ L ++AA
Sbjct: 482 SSCKLYGEAELGREAA 497
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 76/137 (55%), Gaps = 21/137 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT+F T L+SCAKL + LG QI RI++ G+ +++F+ SA +++Y C
Sbjct: 99 PTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSALVDLYAKCDAIVDAKRV 158
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W +I G+++N ++AI +K+++ S +K + VT+V++++ C+ +
Sbjct: 159 FDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCVTYVSVISACTGLETI 218
Query: 106 YAEVEIFNSMEHDHEVK 122
+ + + H H VK
Sbjct: 219 FDQCALL----HAHVVK 231
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQIL-TRIVKDGYGNDIFVGSAPINIYCNCG----- 54
+ P + +V+S+C L ++F +L +VK G+G FV S I+ Y CG
Sbjct: 198 IKPNCVTYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCGRIDQA 257
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
+ +N MI GY++N + E+A+ L+ ++ +G+ T +IL C
Sbjct: 258 VLLFGTTIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGLNPTDHTLTSILNAC 314
>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
Length = 706
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 91/189 (48%), Gaps = 41/189 (21%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
+ LS+CA + +L G++I ++K + +D+F SA IN+Y CG
Sbjct: 418 SAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQE 477
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V WN +I Y + Y+ +++L+ +++ G++ D +TF+ IL+ C H+G V V
Sbjct: 478 KNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRY 537
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F M ++ + + C+ MP+ VWG L+ +C+VH
Sbjct: 538 FRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHG 597
Query: 148 NVRLAKKAA 156
NV LA+ A+
Sbjct: 598 NVELAEVAS 606
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+P ++ F V+ C L+++ LG+ I I++ G+ D+FV S+ I +Y + G
Sbjct: 6 VFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDAR 65
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT-PCSHS 102
V WN MI+GY + + AI L+KD+++S K D VTF +L+ CS +
Sbjct: 66 RFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEA 125
Query: 103 GLVYAE 108
+ Y
Sbjct: 126 MVEYGR 131
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 17/130 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F+++L +CA L+++ LGR++ I+K+ VGSA +N+Y CG
Sbjct: 311 PNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLI 370
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ WN +I ++++ E+AI L++ + GVK+D VT A L+ C++ +
Sbjct: 371 FGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPAL 430
Query: 106 YAEVEIFNSM 115
+ EI M
Sbjct: 431 HYGKEIHGFM 440
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F VLS + + GRQ+ +V+ G VG+ + +Y
Sbjct: 109 PDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKL 168
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V WN MI GY +N +++ A L+ ++I++G+K D +TF + L + S
Sbjct: 169 FDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAES 225
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P FT+ L S A+ SSL ++I IV+ G D+++ SA I++Y C
Sbjct: 208 IKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMAC 267
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V + MI GY N + A+ +++ ++ + + +TF +IL C+
Sbjct: 268 KMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACA 324
>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
Length = 857
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F LS+CA +L G++I +++ G G++ +V +A +++Y CG
Sbjct: 495 VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAW 554
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN M+ G+ + + A+SL+ ++ G D VTFVA+L CS +G
Sbjct: 555 AQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAG 614
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V E+F+ M + P C+ MP K D VWG L
Sbjct: 615 MVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGAL 674
Query: 140 VSSCQVHSNVRLAKKAA 156
++ C++H +V L + AA
Sbjct: 675 LNGCRIHRHVELGELAA 691
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F VL +C + +GR++ +++ G+G+++ V +A + +Y CG
Sbjct: 195 PDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKV 254
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95
++WN MI G+ EN E + L+ ++ + V+ + +T ++
Sbjct: 255 FDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSV 304
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 12 LSSCAKLSS------LFLGRQILTRIVKDG---YGNDIFVGSAPINIYCNCGVTWNEMIH 62
+ +CA+ + L LG +L+ +V+ G + +F +++ +WN M+
Sbjct: 116 MRACARADAEHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVF-----SWNVMVG 170
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
GY + ++E+A+ LY ++ +G++ D TF +L C
Sbjct: 171 GYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCG 208
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 17/108 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T+V + LS + +++ VK G+ D+ ++ I +Y + G
Sbjct: 294 VQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAG 353
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVT 91
++W MI GY +N + ++A+ +Y + V D VT
Sbjct: 354 KIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVT 401
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F ++VL++C+ + ++ GR + + ++ D +G+A +++Y CG
Sbjct: 292 PGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEV 351
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TWN MI G A + E A+ L+ + +K +G+T V +LT C+H+G V
Sbjct: 352 FEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFV 411
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ IF +M + V P+ C+ MP K + VWG L+
Sbjct: 412 DKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLG 471
Query: 142 SCQVHSNVRLAKKAA 156
+C++H N LA++
Sbjct: 472 ACRIHGNFDLAERVG 486
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 20/135 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F + T+ +C+ ++ GRQI +VK G G+D+ + SA I +Y + G
Sbjct: 130 PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKM 189
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V WN MI GY + +E A L+ + VK+ G ++ ++ + G +
Sbjct: 190 FYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQM---PVKNIG-SWNVMINGLAKGGNLG 245
Query: 107 AEVEIFNSMEHDHEV 121
++F+ M E+
Sbjct: 246 DARKLFDEMSERDEI 260
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 42/196 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + T+VLS+CA L +L GR + I + G DI +G+A +++Y CG
Sbjct: 300 VEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMAL 359
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN ++ G A + + +A+ ++ +I +G++ + VTF+AILT C HSG
Sbjct: 360 HIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSG 419
Query: 104 LVYAEVEIFNSM-----------EH--------------DHEVKPKCLMPYKDDLVVWGD 138
LV F M EH D K MP D+++WG
Sbjct: 420 LVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGA 479
Query: 139 LVSSCQVHSNVRLAKK 154
L+S+C+ + NV L+++
Sbjct: 480 LLSACKANGNVELSQE 495
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F +VL +C ++ L +G+ + + K +G + VG+A +++Y C
Sbjct: 199 VVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEAR 258
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G + + + ++ L+ D+ SGV+ D + ++L+ C+ G
Sbjct: 259 KLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLG 318
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F VL +C K + G Q+ VK G+ D++V ++ ++ Y CG
Sbjct: 103 PDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRV 162
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I GY ++AI+L+ + V + TFV++L C G
Sbjct: 163 FDEMLVRDVVSWTGLISGYVRTGLFDEAINLF---LKMDVVPNVATFVSVLVACGRMG 217
>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
Length = 870
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F LS+CA +L G++I +++ G G++ +V +A +++Y CG
Sbjct: 495 VKPNSVTFIAALSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAW 554
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN M+ G+ + + A+SL+ ++ G D VTFVA+L CS +G
Sbjct: 555 AQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAG 614
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V E+F+ M + P C+ MP K D VWG L
Sbjct: 615 MVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGAL 674
Query: 140 VSSCQVHSNVRLAKKAA 156
++ C++H +V L + AA
Sbjct: 675 LNGCRIHRHVELGELAA 691
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F VL +C + +GR++ +++ G+G+++ V +A + +Y CG
Sbjct: 195 PDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIVAARKV 254
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95
++WN MI G+ EN E + L+ ++ + V+ + +T ++
Sbjct: 255 FDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSV 304
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 14/98 (14%)
Query: 12 LSSCAKLSS------LFLGRQILTRIVKDG---YGNDIFVGSAPINIYCNCGVTWNEMIH 62
+ +CA+ + L LG +L+ +V+ G + +F +++ +WN M+
Sbjct: 116 MRACARADAEHPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVF-----SWNVMVG 170
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
GY + ++E+A+ LY ++ +G++ D TF +L C
Sbjct: 171 GYGKVGFLEEALDLYYRMLWAGMRPDVYTFPCVLRTCG 208
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 17/108 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T+V + LS + +++ VK G+ D+ ++ I +Y + G
Sbjct: 294 VQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAG 353
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVT 91
++W MI GY +N + ++A+ +Y + V D VT
Sbjct: 354 KIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVT 401
>gi|224058449|ref|XP_002299515.1| predicted protein [Populus trichocarpa]
gi|222846773|gb|EEE84320.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F+ +L +C+ ++ + LGR + + ++K G+ D FV S+ I+IYC CG
Sbjct: 277 FSIILKACSAITDMQLGRAVHSLVLKTGFDQDSFVESSVIDIYCKCGSIGQAEKAFRSSS 336
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
WN M+ GYA + ++ L+ + G++ D +T++ +L+ C H GLV
Sbjct: 337 MNSLAAWNAMMMGYAHHGCYQEVFDLFNKMSQFGIEPDEITYLGVLSSCCHGGLVKEARH 396
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
+SM H + P C+ MP + D+ +W L+S+C +H
Sbjct: 397 YLDSMFELHGIIPHLEHYACMIDLLGRVGLLEDAKKTIDHMPIQPDVHIWQILLSACNIH 456
Query: 147 SNVRLAKKAA 156
+V L + AA
Sbjct: 457 GHVELGRVAA 466
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++ VLS + L G+QI K GY + V +A +++Y CG
Sbjct: 71 NEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQICDACRVF 130
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN +I +EN +V QA+ ++ + ++ T +IL S+S
Sbjct: 131 YNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNS 186
>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
Length = 864
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + TVL +CA L+++ LG+QI +I+K D ++ S +++Y CG
Sbjct: 551 VKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSL 610
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GYA + +A+ +++ + + V + TFVA+L CSH G
Sbjct: 611 LMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVG 670
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ + F+ M +++ P+ C+ MP + D VVW L
Sbjct: 671 LLDDGCQYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTL 730
Query: 140 VSSCQVHSNVRLAKKAA 156
+S C++ +V +A+ AA
Sbjct: 731 LSICKIRQDVEVAETAA 747
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F + +VL +CA L SL G + + +K G G D FV S +++YC CG
Sbjct: 452 PDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCKCGAITEAQKL 511
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I G++ + E+A + +++ GVK D T+ +L C++
Sbjct: 512 HDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCAN 567
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------------- 53
+ V S+CA++ F G Q+ VK G+ D+ V +A +++Y C
Sbjct: 356 LSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEME 415
Query: 54 ---GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I +NE E I+ +++ SG++ D T+ ++L C+
Sbjct: 416 QRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACA 465
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+Q + + SCA + L RQ+ +K+ + +D VG+A +++Y G
Sbjct: 251 SQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAF 310
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
T N M+ G +A+ L++ + SGV D ++ + + C+
Sbjct: 311 IGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACA 364
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------------- 53
+L SC L L LG QI VK G D+ GSA +++Y C
Sbjct: 154 LAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMG 213
Query: 54 ---GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W I G +NE + + L+ + G+ + + C+
Sbjct: 214 ERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCA 263
>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
Length = 645
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P VL +C+ L++L G ++ G+ D + +A I++Y CG
Sbjct: 271 PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREV 330
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI GY + +A+ L+ D++A G+K D +TF+ +L+ CSHSGLV
Sbjct: 331 FNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLV 390
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F++M D + P+ C+ MP++ D+ +W L+S
Sbjct: 391 MEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLS 450
Query: 142 SCQVHSNVRLAKKAA 156
+C++H N+ L ++ +
Sbjct: 451 ACRIHKNIELGEEVS 465
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 20/138 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ + VL +C+ L ++ G +I + G +D+FV +A ++ Y CG
Sbjct: 105 VRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQ 164
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI G + + A+ L + G+ + T V +L C
Sbjct: 165 RLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC--QC 222
Query: 104 LVYAEVEIFNSMEHDHEV 121
L+YA +IF+ M +EV
Sbjct: 223 LLYAR-KIFDVMGVRNEV 239
Score = 39.3 bits (90), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W+ MI GY ++ +++A+ +++ + SG+ D T + +L CSH
Sbjct: 239 VSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSH 285
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 25/132 (18%)
Query: 3 PTQFP----FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---- 54
P +F + +L +C + SL ++I +K+ D V +Y +C
Sbjct: 2 PLRFEVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVL 61
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+ WN++I YA N + AI LY ++ GV+ + T+ +L C
Sbjct: 62 ARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKAC-- 119
Query: 102 SGLVYAE--VEI 111
SGL+ E VEI
Sbjct: 120 SGLLAIEDGVEI 131
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F ++VL++C+ + ++ GR + + ++ D +G+A +++Y CG
Sbjct: 292 PGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEV 351
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TWN MI G A + E A+ L+ + +K +G+T V +LT C+H+G V
Sbjct: 352 FEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFV 411
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ IF +M + V P+ C+ MP K + VWG L+
Sbjct: 412 DKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLG 471
Query: 142 SCQVHSNVRLAKKAA 156
+C++H N LA++
Sbjct: 472 ACRIHGNFDLAERVG 486
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 20/135 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F + T+ +C+ ++ GRQI +VK G G+D+ + SA I++Y + G
Sbjct: 130 PNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKM 189
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V WN MI GY + +E A L+ + VK+ G ++ ++ + G +
Sbjct: 190 FYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQM---PVKNIG-SWNVMINGLAKGGNLG 245
Query: 107 AEVEIFNSMEHDHEV 121
++F+ M E+
Sbjct: 246 DARKLFDEMSERDEI 260
>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g39530-like [Vitis vinifera]
Length = 825
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F F ++++ + L+SL G+Q ++VK G FV +A +++Y CG
Sbjct: 531 PNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKM 590
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI +A++ E+A+ ++++++ G++ + VTFVA+L+ CSH+G V
Sbjct: 591 FNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRV 650
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+ FNSM +KP C+ MP + +VW L+S
Sbjct: 651 EDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLS 709
Query: 142 SCQVHSNVRLAKKAA 156
+C++ NV L K AA
Sbjct: 710 ACRIAGNVELGKYAA 724
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ F ++L A L +L L +QI I+K G D+F GSA I++Y C
Sbjct: 430 PSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHV 489
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN M GY ++ E+A+ LY + S K + TF A++T S+
Sbjct: 490 FEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASN 545
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 23/172 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ ++VLS+C+ L L G+QI +++ G D+ V + I+ Y C
Sbjct: 226 VVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGR 285
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS--- 100
++W MI GY +N + +A+ L+ ++ G K DG ++LT C
Sbjct: 286 KLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSRE 345
Query: 101 --HSGLVYAEVEIFNSMEHDHEVKPKCLMPY-KDDLVVWGDLVSSCQVHSNV 149
G I ++E D VK + Y K +L++ V NV
Sbjct: 346 ALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNV 397
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P +F +V+ +C +L + G Q+ +V+ G+ D++VG++ I+ Y G
Sbjct: 126 HPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARL 185
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTW +I GY + ++ L+ + + V D ++L+ CS
Sbjct: 186 VFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACS 241
>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F F ++++ + L+SL G+Q ++VK G FV +A +++Y CG
Sbjct: 452 PNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKM 511
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI +A++ E+A+ ++++++ G++ + VTFVA+L+ CSH+G V
Sbjct: 512 FNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRV 571
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+ FNSM +KP C+ MP + +VW L+S
Sbjct: 572 EDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLS 630
Query: 142 SCQVHSNVRLAKKAA 156
+C++ NV L K AA
Sbjct: 631 ACRIAGNVELGKYAA 645
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 23/172 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ ++VLS+C+ L L G+QI +++ G D+ V + I+ Y C
Sbjct: 248 VVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGR 307
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS--- 100
++W MI GY +N + +A+ L+ ++ G K DG ++LT C
Sbjct: 308 KLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSRE 367
Query: 101 --HSGLVYAEVEIFNSMEHDHEVKPKCLMPY-KDDLVVWGDLVSSCQVHSNV 149
G I ++E D VK + Y K +L++ V NV
Sbjct: 368 ALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNV 419
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F T+VL+SC +L GRQ+ +K +D FV + I++Y
Sbjct: 351 PDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKV 410
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+++N MI GY+ E + +A+ L+ ++ K + TF A++T S+
Sbjct: 411 FDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASN 466
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P +F +V+ +C +L + G Q+ +V+ G+ D++VG++ I+ Y G
Sbjct: 148 HPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARL 207
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTW +I GY + ++ L+ + + V D ++L+ CS
Sbjct: 208 VFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACS 263
>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
Length = 562
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + +V+SS A+L++LF G+QI +K G + + V S+ I++Y CG
Sbjct: 186 LRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSM 245
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ MI Y + E+A+ L++ + G+ + VTF+++L CSH+G
Sbjct: 246 KALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNG 305
Query: 104 LVYAEVEIFNSMEHDHEVKPK---------------CL---------MPYKDDLVVWGDL 139
L + F M + +KP+ CL MP + D+V+W L
Sbjct: 306 LKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTL 365
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N +A + A
Sbjct: 366 LSACRIHRNADMATRTA 382
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 62/126 (49%), Gaps = 17/126 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F +VL CA L + + G+Q+ ++K GY ++ VGS+ ++Y G
Sbjct: 87 PDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKV 146
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN +I G A+N + E + LY + SG++ D +T V++++ + +
Sbjct: 147 IKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATL 206
Query: 106 YAEVEI 111
+ +I
Sbjct: 207 FQGQQI 212
>gi|115462159|ref|NP_001054679.1| Os05g0153400 [Oryza sativa Japonica Group]
gi|52353594|gb|AAU44160.1| unknown protein [Oryza sativa Japonica Group]
gi|54287570|gb|AAV31314.1| unknown protein [Oryza sativa Japonica Group]
gi|113578230|dbj|BAF16593.1| Os05g0153400 [Oryza sativa Japonica Group]
gi|215766042|dbj|BAG98270.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196115|gb|EEC78542.1| hypothetical protein OsI_18502 [Oryza sativa Indica Group]
gi|222630240|gb|EEE62372.1| hypothetical protein OsJ_17161 [Oryza sativa Japonica Group]
Length = 507
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 42/193 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F + +C +L+ L G Q R+++ G+ +D+ V ++ +++Y CG
Sbjct: 225 FSFAISVDACGELALLKQGMQAHARVIRGGFDSDVVVRNSLVDMYAKCGCVDSAGLVFRD 284
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V W MI Y + V AI ++ + G+K DGV ++A+L+ CSHSGLV
Sbjct: 285 ALSSDAVLWTTMISAYGKFGRVHDAICMFDRMSQLGIKRDGVAYLAVLSACSHSGLVKEG 344
Query: 109 VEIFNSMEHDH---EVKPK---CL-------------------MPYKDDLVVWGDLVSSC 143
F M H +++P+ C+ MP++ + W L++SC
Sbjct: 345 WNYFKLMFHGQNSVKMQPEHYGCMADLLCRSGYLEEALDFITNMPFESSIAAWSALLNSC 404
Query: 144 QVHSNVRLAKKAA 156
++H N +L + AA
Sbjct: 405 RIHGNAKLGQLAA 417
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 21/126 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLS--SLFLGRQILTRIVKDG-YGN-DIFVGSAPINIYCNCG-- 54
V P + + L +CA + +L G++I R+VK +G+ D V + +++Y CG
Sbjct: 115 VVPNGYSLSGALLACAGIGPGALAAGKEIHARVVKMSLHGSVDAVVENGVLDMYTRCGKI 174
Query: 55 ---------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V WN M+ G + E+A+ L+ +++SGV DG +F + C
Sbjct: 175 DYARKLFGVMLVRDIVAWNSMMAGCLRSGQAEEALGLFSSMVSSGVDADGFSFAISVDAC 234
Query: 100 SHSGLV 105
L+
Sbjct: 235 GELALL 240
>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
Length = 820
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F+TVL S A L++L G I +I+K GY ++ + + I +Y CG
Sbjct: 444 ILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAY 503
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI Y + Q I L++ +++ G++ VTFV +L+ CSH+G
Sbjct: 504 QVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTG 563
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
V + FNSM+ H++ P C+ MP K VWG L
Sbjct: 564 RVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGAL 623
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ + N+++ ++AA
Sbjct: 624 LGACRKYGNLKMGREAA 640
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 18/120 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP QF F+++LS+ A + G+Q+ + I K G+ +IFVG+A +++Y C
Sbjct: 242 YPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVR 301
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSG 103
V+WN MI G+ N ++A+ ++KD++ V + V+ ++L+ C++ G
Sbjct: 302 VFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMG 361
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 26/158 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + ++VLS+CA + L GRQ+ +VK G +V ++ +++Y C
Sbjct: 343 VIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGV 402
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN ++ G+ +N+ E+A + + + G+ D +F +L +
Sbjct: 403 KLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLA 462
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
++ I HD +K + Y ++ + G L++
Sbjct: 463 ALHQGTAI-----HDQIIK----LGYVKNMCILGSLIT 491
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 20/128 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+L++ + SL QI T+I+ + Y + F+ + IN+Y CG
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHF 207
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
VTW +I + QA+SL+ + SG + TF +IL+ + + +V ++
Sbjct: 208 KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQL 267
Query: 112 FNSMEHDH 119
+S+ H H
Sbjct: 268 -HSLIHKH 274
>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
Length = 687
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 42/188 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++L++CA+ SL LG++I + + V +A ++++C CG
Sbjct: 400 SILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVE 459
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I G+A + E+A+ L+ + G D VT + +L+ C+H GLV
Sbjct: 460 KDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRF 519
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F +ME D+ +KP+ C+ MP++ + V+WG L+S+C++H
Sbjct: 520 FANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHK 579
Query: 148 NVRLAKKA 155
NV A+ A
Sbjct: 580 NVEYAELA 587
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 21/113 (18%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ T+L AK ++ R+ G ++ S ++ YC G
Sbjct: 301 WNTMLDGYAKAGEAEKAFELFQRMP----GRNVVSWSTVVSAYCKKGDMEMARVIFDKMP 356
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW M+ A+ VE+A L+ +++ + ++ D + V+IL C+ SG
Sbjct: 357 AKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESG 409
>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 960
Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P FTT + +CA L+ + LG Q++T K G ++ V ++ + +Y CG
Sbjct: 507 VQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAK 566
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN M+ +A+N + I ++D++ + K + +++V++L+ CSH G
Sbjct: 567 NTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMG 626
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F+SM + P C+ MP+K + VW L
Sbjct: 627 LVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSAL 686
Query: 140 VSSCQVHSNVRLAKKAA 156
+ SC+VH ++RLA+ AA
Sbjct: 687 LGSCRVHHDLRLAETAA 703
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + +VLS+CA S L G + RI++ + D+ G+ I++Y CG
Sbjct: 276 PNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCG-------- 327
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
+ L K + S +HD +++ +++T H GL + +FN M V
Sbjct: 328 ----------CLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVL 377
Query: 123 PKCLMP 128
+ ++P
Sbjct: 378 DEFILP 383
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/162 (19%), Positives = 70/162 (43%), Gaps = 30/162 (18%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F FT+V+ +C L L Q+ + K G+G + + ++ + +Y CG
Sbjct: 147 FSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFD 206
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
WN MI+GY++ +A+ ++ + + D V++ +++ S G
Sbjct: 207 IERPSLFCWNSMIYGYSQMYGPYKALQIFNRM----PERDEVSWNTLISIFSQHGFGVQC 262
Query: 109 VEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVR 150
+ +F M C + + + +G ++S+C S+++
Sbjct: 263 LAMFVEM---------CNQGFSPNFMTYGSVLSACASTSDLK 295
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 48/155 (30%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F T+L C+ G + +K G G+ VG+A I +Y CG
Sbjct: 379 EFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFR 438
Query: 55 --------------------------------------VTWNEMIHGYAENEYVEQAISL 76
VTWN M+ Y +N + E+ + L
Sbjct: 439 LMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKL 498
Query: 77 YKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
Y + ++GV+ D +TF + C+ +V +++
Sbjct: 499 YVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQV 533
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F ++LS+CA+L +L LGR+ +VK G ++ G+A +++Y CG
Sbjct: 237 VEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAH 296
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G A N + ++A+ L+K++ G+ +TFV +L CSH G
Sbjct: 297 KVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCG 356
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V + F M+ ++ + PK C+ MP + + VVW L
Sbjct: 357 MVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTL 416
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C +H ++ L + A
Sbjct: 417 LGACTIHGHLALGEVA 432
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 19/115 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+PF +L + AKL + G ++ + +++G+ + +FV + +++Y CG
Sbjct: 143 YPF--LLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFEL 200
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN +I+GYA N +A++L++++ GV+ DG T V++L+ C+ G
Sbjct: 201 MAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELG 255
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 36 YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95
Y + IF NI+ TWN MI GYAE+E A+ LY+ + S ++ D T+ +
Sbjct: 92 YAHQIFSQIQNPNIF-----TWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFL 146
Query: 96 L 96
L
Sbjct: 147 L 147
>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Glycine max]
Length = 911
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---- 56
V P +T+L +CA S L G +I +K G+ +DI++ +A I++Y G
Sbjct: 535 VKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSKGGKLKVAH 594
Query: 57 -------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN M+ GYA + E+ +L+ ++ +G++ D +TF A+L+ C +SG
Sbjct: 595 EVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTALLSGCKNSG 654
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV + F+SM+ D+ + P C+ MP K D +WG +
Sbjct: 655 LVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKADASIWGAV 714
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C++H ++++A+ AA
Sbjct: 715 LAACRLHKDIKIAEIAA 731
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------------- 53
T VL C L L+LG ++ ++K G+ D+ + A IN+Y C
Sbjct: 134 LTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETP 193
Query: 54 ---GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
WN ++ +E E A+ L + + ++ K T V +L C
Sbjct: 194 LQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQAC 242
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 26/163 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P T+ L + +L LG++I I++ D++V ++ +++Y
Sbjct: 366 PDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVV 425
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
WN +I GY + A L + G+K D VT+ ++++ S SG
Sbjct: 426 FHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCS 485
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSN 148
+ + N +K L P ++V W ++S C + N
Sbjct: 486 EEALAVIN------RIKSLGLTP---NVVSWTAMISGCCQNEN 519
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 52/104 (50%), Gaps = 17/104 (16%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+L +C KL +L G+QI +++ G ++ + ++ +++Y
Sbjct: 238 LLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDSTEDHN 297
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
+WN +I YA N + A L++++ +S +K D +T+ ++L+
Sbjct: 298 LASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLS 341
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
VTWN ++ GY+ + E+A+++ I + G+ + V++ A+++ C + ++ F+
Sbjct: 470 VTWNSLVSGYSMSGCSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFFSQ 529
Query: 115 MEHDHEVKP 123
M+ ++ VKP
Sbjct: 530 MQEEN-VKP 537
>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
gi|194696634|gb|ACF82401.1| unknown [Zea mays]
Length = 615
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 42/188 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++L++CA+ SL LG++I + + V +A ++++C CG
Sbjct: 328 SILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNALMDMFCKCGCVNRADYIFDTEIVE 387
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I G+A + E+A+ L+ + G D VT + +L+ C+H GLV
Sbjct: 388 KDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPDAVTLINVLSACTHMGLVEEGRRF 447
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F +ME D+ +KP+ C+ MP++ + V+WG L+S+C++H
Sbjct: 448 FANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMIKRMPWEPNEVIWGSLLSACRLHK 507
Query: 148 NVRLAKKA 155
NV A+ A
Sbjct: 508 NVEYAELA 515
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 21/113 (18%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ T+L AK ++ R+ G ++ S ++ YC G
Sbjct: 229 WNTMLDGYAKAGEAEKAFELFQRMP----GRNVVSWSTVVSAYCKKGDMEMARVIFDKMP 284
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW M+ A+ VE+A L+ +++ + ++ D + V+IL C+ SG
Sbjct: 285 AKNLVTWTIMVSACAQKGLVEEAGRLFTEMMDAAIELDVIAVVSILAACAESG 337
>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 855
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TT+L +CA+L+SL +G Q+ VK G D+ V + I++Y CG
Sbjct: 561 PDNITITTILGTCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDV 620
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ +I GYA+ +A++L++ + GV+ + VT++ +L+ CSH GLV
Sbjct: 621 FGSTQNPDIVSWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLV 680
Query: 106 YAEVEIFNSMEHDHEVKPK---------------CL---------MPYKDDLVVWGDLVS 141
+N+ME + + P CL M + D+ +W L++
Sbjct: 681 EEGWHFYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKMGFNPDITMWKTLLA 740
Query: 142 SCQVHSNVRLAKKAA 156
SC+ H NV +A++AA
Sbjct: 741 SCKTHGNVDIAERAA 755
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F F +V S+C L GRQI K G G ++F G + ++Y G
Sbjct: 358 PNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAIRA 417
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN +I ++++ V +AI + ++ +G+ DG+TF+++L C
Sbjct: 418 FYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCAC 471
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ ++ +C + SL G++I I+K D+ + + +N+Y CG
Sbjct: 160 YGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQ 219
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY++N AI +Y ++ SG D +TF +I+ C +G
Sbjct: 220 LRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAG 272
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 18/116 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P F +++ +C + LGRQ+ ++K GY + + +A I++Y G
Sbjct: 255 FPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASD 314
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGV-KHDGVTFVAILTPC 99
++W MI G+ + Y +A+ L++D+ G + + F ++ + C
Sbjct: 315 VFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSAC 370
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 22/133 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F ++L +C ++ G QI + I+K G + V ++ + +Y C
Sbjct: 457 LMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSNLHDAF 516
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN ++ +++ + L+K ++ S K D +T IL C+
Sbjct: 517 NVFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGTCAE- 575
Query: 103 GLVYAEVEIFNSM 115
A +E+ N +
Sbjct: 576 ---LASLEVGNQV 585
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 42/196 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + ++S+ A++ +L GR I VK + F GSA I++YC CG
Sbjct: 357 VKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAF 416
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW MI G+A + + +A+ L+ ++ + K + VTFV++L CSHSG
Sbjct: 417 VIFNQIPEKDVTTWTTMITGFAFHGFGNKALELF-SVMQAETKPNDVTFVSVLAACSHSG 475
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV ++IF+SM+ + ++P CL MP + +WG +
Sbjct: 476 LVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAV 535
Query: 140 VSSCQVHSNVRLAKKA 155
+S+C++H N+ LA++A
Sbjct: 536 LSACRMHRNMELAERA 551
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 44/165 (26%)
Query: 36 YGN----DIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQAI 74
+GN DIFVG++ I++Y CG V+WN +I GYA+N Y +A+
Sbjct: 384 FGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEAL 443
Query: 75 SLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH-------DHEV------ 121
+++ ++ G K D VT + +L CSH+GLV F SME DH
Sbjct: 444 QIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLL 503
Query: 122 -KPKCL---------MPYKDDLVVWGDLVSSCQVHSNVRLAKKAA 156
+ CL MP D VVWG L+++C+VH N+ + K AA
Sbjct: 504 GRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAA 548
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 25/168 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++ F + LS+CA L L +G Q+ + K Y D+++GSA I++Y CG
Sbjct: 146 NEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVF 205
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
VTWN +I Y +N +A+ ++ ++ SG++ D VT ++++ C+ +
Sbjct: 206 SGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALK 265
Query: 107 AEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
++I H VK ++DDLV+ LV S V A++
Sbjct: 266 EGLQI-----HARVVKTN---KFRDDLVLGNALVDMYAKCSKVNEARR 305
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 22/134 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCG------- 54
P + +V+S+CA L +L G QI R+VK + + +D+ +G+A +++Y C
Sbjct: 246 PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+ M+ GYA V+ A ++ + V V++ A++ + +G
Sbjct: 306 VFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIAGYTQNGE 361
Query: 105 VYAEVEIFNSMEHD 118
+ +F ++ +
Sbjct: 362 NEEALRLFRLLKRE 375
>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 43/199 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT F ++VLS+CA LS L +G+ + T VK +IFVGSA +++Y CG
Sbjct: 205 IEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAE 264
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASG--VKHDGVTFVAILTPCSH 101
VTWN MI GYA + A++L+ ++ V + VTFV +L+ CS
Sbjct: 265 RAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSR 324
Query: 102 SGLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWG 137
+G V +EIF SM + ++P C+ MP + + VWG
Sbjct: 325 AGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWG 384
Query: 138 DLVSSCQVHSNVRLAKKAA 156
L+ + ++ L K AA
Sbjct: 385 ALLGASKMFGKSELGKVAA 403
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 19/126 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
+ P F F + L S +G+Q+ VK G +D+FVG + ++Y G+
Sbjct: 104 IQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEAR 163
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN + + A++ + + G++ ++L+ C +G
Sbjct: 164 KMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSAC--AG 221
Query: 104 LVYAEV 109
L EV
Sbjct: 222 LSVLEV 227
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 98/186 (52%), Gaps = 41/186 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++L++C + L LG +I + + + G++ +V +A +++Y CG
Sbjct: 320 SILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKK 379
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIF 112
V+WN M+HG + + ++AI L+ + G++ D VTF+A+L C+H+GL+ ++ F
Sbjct: 380 DLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYF 439
Query: 113 NSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSN 148
SME +++ P+ CL MP + ++V+WG L+ +C++H+
Sbjct: 440 YSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNE 499
Query: 149 VRLAKK 154
V +AK+
Sbjct: 500 VDIAKE 505
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
VTW +I GYAE +++A L ++ASG+K D ++IL C+ SGL+ + I
Sbjct: 281 VTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRI 337
>gi|334187347|ref|NP_680777.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635624|sp|Q3E9N1.2|PP359_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g39952, mitochondrial; Flags: Precursor
gi|332661744|gb|AEE87144.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 775
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 93/198 (46%), Gaps = 46/198 (23%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ T+L +C SL G+ I I + + ++ + +A I++Y CG
Sbjct: 531 PSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSREL 590
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI GY + VE AI+L+ + S VK G TF+A+L+ C+H+GLV
Sbjct: 591 FDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACTHAGLV 650
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
++F M H ++VKP CL MP+ D V+WG L+S
Sbjct: 651 EQGKKLFLKM-HQYDVKPNLKHYSCLVDLLSRSGNLEEAESTVMSMPFSPDGVIWGTLLS 709
Query: 142 SCQVHS----NVRLAKKA 155
SC H +R+A++A
Sbjct: 710 SCMTHGEFEMGIRMAERA 727
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 16/111 (14%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
T+V+SSC+ + ++ LG+ + +VK I V ++ I++Y G
Sbjct: 437 TSVISSCSHIGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADT 496
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TWN MI Y E E+AI+L+ +++ K +T V +L C ++G
Sbjct: 497 NVITWNAMIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTG 547
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
WN M+ GY + + + I L++ I G++ D + ++++ CSH G V
Sbjct: 400 AWNTMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAV 449
>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 2000
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F+++L +CA +SL G+ + +IVK G D +VG+A ++Y G
Sbjct: 446 PNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKV 505
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDI-IASGVKHDGVTFVAILTPCSHSGL 104
V+W MI G AE+ E++++L++++ S + + V F+A+L CSHSGL
Sbjct: 506 FNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGL 565
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V + FNSME + +KPK C+ MP++ + W L+
Sbjct: 566 VDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALL 625
Query: 141 SSCQVHSNVRLAKKAA 156
S C+ + N LA++ A
Sbjct: 626 SGCKTYKNEELAERVA 641
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F+++LS+ A + +L G I + K G+ D+FV S+ I++YC CG
Sbjct: 319 FSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTIL 378
Query: 55 ----VTWNEMIHGYAENEYVEQAISLY 77
V+WN M+ GY+ N ++E+A L+
Sbjct: 379 EKNMVSWNAMVGGYSLNGHMEEAKYLF 405
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 21/132 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + FT+V+ +CA L LG +L IVK GY +D+ V ++ I + G
Sbjct: 180 VKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAR 239
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W ++ Y E + + +A ++ ++ + + V++ A++ SG
Sbjct: 240 EVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEM----PQRNEVSWSAMIARYCQSG 295
Query: 104 LVYAEVEIFNSM 115
+ +F M
Sbjct: 296 YPEESLRLFCRM 307
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+W I GY +N + +A+ L+ ++ S VK + VTF +++ C++ G + +
Sbjct: 150 VSWTAAISGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGL 209
Query: 115 MEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
+ VK Y+ DL V L++ C + LA++
Sbjct: 210 I-----VK----TGYEHDLAVSNSLITLCLRMGEIHLARE 240
>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 628
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 42/193 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F FT+VL + +S+L G+QI ++K GYG+++ V + +++Y CG
Sbjct: 385 FTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSL 444
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
++WN ++ G A + Y +A+ L++ + SGVK D TF+ +L+ C H GL+
Sbjct: 445 MDRHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRHVGLLDKG 504
Query: 109 VEIFNSMEHDHEVKPKC-------------------------LMPYKDDLVVWGDLVSSC 143
+E F+ M +D+ ++ MP + V+ L+S+C
Sbjct: 505 LEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPGPSVYKALLSAC 564
Query: 144 QVHSNVRLAKKAA 156
QVH NV +A + A
Sbjct: 565 QVHGNVEIAVRCA 577
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT ++SSCAK S+F+G Q+ + I+K G+ +++++ SA +++Y CG
Sbjct: 77 PTAHILNRMVSSCAKSGSVFVGIQLHSTIIKVGFDSNVYICSALVDMYGKCGAVSSAQRL 136
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
VTWN +I GY E AI L+ +++ G+ + A+L C
Sbjct: 137 FDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMVKVGIDPTPFSVSAVLVGC 190
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F + VL C ++ LG Q+ +K G+ +I VG+ I++Y
Sbjct: 178 PTPFSVSAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLM 237
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+TW M+ GYA + A+ L +D+ G++ + VT+ +L+ S S
Sbjct: 238 FDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSS 294
>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 97/196 (49%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + + TVL CA ++++ LG+QI +I+K +D+++ S +++Y CG
Sbjct: 538 IIPDNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSR 597
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW+ MI YA + E+AI+L++++ VK + F+++L C+H G
Sbjct: 598 LMFEKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMG 657
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
V + F M + + P+ C+ MP++ D V+W L
Sbjct: 658 YVDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTL 717
Query: 140 VSSCQVHSNVRLAKKA 155
+S+C++ NV +A+KA
Sbjct: 718 LSNCKMQGNVEVAEKA 733
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F + +V+ +CA +L G +I RI+K G G D FVGSA +++Y CG
Sbjct: 439 PDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKI 498
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I G++ + E A + ++ G+ D T+ +L C++ +
Sbjct: 499 HARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATI 558
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F +L +C+ + LG Q+ ++ G+ ND+ GSA +++Y C
Sbjct: 141 FAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMP 200
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W+ +I GY +N+ + + L+KD++ G+ T+ ++ C+
Sbjct: 201 ERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCA 250
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC---------- 53
+Q + +V SCA LS+ LG Q+ +K + D +G+A +++Y C
Sbjct: 238 SQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVF 297
Query: 54 -------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++N +I GYA + +A+ +++ + + + D ++ LT CS
Sbjct: 298 NTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACS 351
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 22/132 (16%)
Query: 3 PTQ-FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
PT+ F+ +L C+ L +L G+Q+ T+++ G+ I+V + + YC
Sbjct: 3 PTKKLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFK 62
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
++WN +I GYA + A SL+ S + D V++ ++L+ H+G+
Sbjct: 63 VFDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFD----SMPERDVVSWNSLLSCYLHNGV 118
Query: 105 VYAEVEIFNSME 116
+EIF M
Sbjct: 119 NRKSIEIFVRMR 130
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 17/113 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+ + L++C+ + G Q+ VK G G +I V + +++Y CG
Sbjct: 340 EISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFE 399
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I + +NE + + +SL+ ++ S ++ D T+ +++ C+
Sbjct: 400 EMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACA 452
>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Vitis vinifera]
Length = 684
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 43/199 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT F ++VLS+CA LS L +G+ + T VK +IFVGSA +++Y CG
Sbjct: 306 IEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAE 365
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASG--VKHDGVTFVAILTPCSH 101
VTWN MI GYA + A++L+ ++ V + VTFV +L+ CS
Sbjct: 366 RAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSR 425
Query: 102 SGLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWG 137
+G V +EIF SM + ++P C+ MP + + VWG
Sbjct: 426 AGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWG 485
Query: 138 DLVSSCQVHSNVRLAKKAA 156
L+ + ++ L K AA
Sbjct: 486 ALLGASKMFGKSELGKVAA 504
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 19/124 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P F L++CA S L LGRQ+ +++ G+ D+ V + I+ Y C
Sbjct: 207 PNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEII 266
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI Y +N+ E+A ++ G++ ++L+ C +GL
Sbjct: 267 FSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSAC--AGLS 324
Query: 106 YAEV 109
EV
Sbjct: 325 VLEV 328
Score = 43.1 bits (100), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
+ P F F + L S +G+Q+ VK G +D+FVG + ++Y G+
Sbjct: 104 IQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEAR 163
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
TWN + + A++ + + G + + +TF A L C+
Sbjct: 164 KMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACA 220
>gi|413918573|gb|AFW58505.1| hypothetical protein ZEAMMB73_474993 [Zea mays]
Length = 773
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 44/197 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TV+S+CA L +L G +I + + + G+ D+ + +A I++Y CG
Sbjct: 525 PNSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGIARRI 584
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI GY + +QA+ L+ + +K +GVTF+AIL+ HSGL+
Sbjct: 585 FDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSALCHSGLL 644
Query: 106 YAEVEIFNSM----------------------EHDHEVKPKCL-MPYKDDLVVWGDLVSS 142
++F M H E + L MP + D +WG L+S+
Sbjct: 645 EEGRKVFTRMGKYSLEPNLKHYACMVDLLGKSGHLQEAEDMVLAMPIEPDGGIWGTLLSA 704
Query: 143 CQVHSN----VRLAKKA 155
C++H N +R+AKKA
Sbjct: 705 CKLHDNFEMGLRIAKKA 721
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 18/112 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +SSC++L+ L LGR +K D V + I +Y CG
Sbjct: 428 LVSAISSCSRLAELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGRCGKFDHACKIFGLAK 487
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTWN +I YA + A+SLY ++ G+ + T + +++ C++
Sbjct: 488 LKGDVVTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACAN 539
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 17/124 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P + L +C L L GR + +VK G G+ V SA ++Y C
Sbjct: 216 VRPNSRTMESGLEACGVLDELNSGRCLHGYVVKVGIGDSPMVISALFSMYSKCYSTEDAC 275
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I Y + +A+ L++ ++ SG++ D + +L+ ++G
Sbjct: 276 ALFLELPEKDVVSWTSLIGIYCRRGLITEAMELFQQMMESGLQPDEILVSCVLSGLGNNG 335
Query: 104 LVYA 107
V+
Sbjct: 336 NVHG 339
>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Glycine max]
Length = 1582
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F T++ +C+ L++L GRQI VK D FV ++ +++Y CG
Sbjct: 1206 VQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDAR 1265
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI G A++ E+A+ ++++ + GV D VTF+ +L+ CSHSG
Sbjct: 1266 GLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSG 1325
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV E F SM+ + ++P+ CL MP++ ++ L
Sbjct: 1326 LVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTL 1385
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+V + K+ A
Sbjct: 1386 LNACRVQVDRETGKRVA 1402
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
Q + L L G+QI +VK G+ D+FV S +++Y CG
Sbjct: 1108 NQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIF 1167
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W MI G EN E A+ Y + S V+ D TF ++ CS
Sbjct: 1168 NEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACS 1221
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F +LS A L+ L LG+QI +V+ G + VG+ IN+Y G
Sbjct: 909 FVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMN 968
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI G A + E ++ ++ D++ G+ D T ++L CS G
Sbjct: 969 EVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLG 1021
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSS-LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
+ P QF +VL +C+ L L QI +K G D FV + I++Y G
Sbjct: 1003 LLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEA 1062
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFV 93
+WN M+HGY + +A+ LY + SG + + +T
Sbjct: 1063 EFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLA 1113
>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P VLS+CA L+ L G+QI R ++ + V +A I +Y G
Sbjct: 428 PNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRV 487
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
VTW MI A++ EQAI L+++++ GVK D VT++ + + C+H+G
Sbjct: 488 FDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGF 547
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
+ + M ++H + P+ C+ MP D VVWG L+
Sbjct: 548 IDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLL 607
Query: 141 SSCQVHSNVRLAKKAA 156
++C+V N LA+ AA
Sbjct: 608 AACRVRKNADLAELAA 623
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 81/168 (48%), Gaps = 32/168 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+QF T VLSSCA + +GR++ + ++K G + + V ++ + +Y CG
Sbjct: 161 PSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAV 220
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN M+ Y ++ A+S+++++ + V++ AI+ + +GL
Sbjct: 221 FERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSI----VSWNAIIAGYNQNGLD 276
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAK 153
++ F+ M ++P D+ V ++S+C +N+R+ K
Sbjct: 277 DMALKFFSRMLTASSMEP-------DEFTV-TSVLSAC---ANLRMLK 313
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 50/148 (33%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F T+VLS+CA L L +G+Q+ + I++ G + +A I+ Y G
Sbjct: 294 PDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRI 353
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
+ W MI GY +N ++
Sbjct: 354 MDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDE 413
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCS 100
A+ L++ +I SG + + T A+L+ C+
Sbjct: 414 AMELFRSMIRSGPEPNSHTLAAVLSACA 441
>gi|115453187|ref|NP_001050194.1| Os03g0369700 [Oryza sativa Japonica Group]
gi|12039352|gb|AAG46139.1|AC082644_21 hypothetical protein [Oryza sativa Japonica Group]
gi|108708369|gb|ABF96164.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548665|dbj|BAF12108.1| Os03g0369700 [Oryza sativa Japonica Group]
gi|125544037|gb|EAY90176.1| hypothetical protein OsI_11741 [Oryza sativa Indica Group]
gi|125586399|gb|EAZ27063.1| hypothetical protein OsJ_10992 [Oryza sativa Japonica Group]
Length = 513
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 53/198 (26%), Positives = 94/198 (47%), Gaps = 44/198 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F +VL +C+ LSS +G Q+ +++K +DI GSA +++Y CG
Sbjct: 258 PTVSTFVSVLGACSLLSSPEIGEQVHCQVIKSSLSSDIKAGSALLDMYSKCGRVDDGRRI 317
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIA---SGVKHDGVTFVAILTPCSHS 102
+TW MI GY +N ++A+ L++ ++ ++ + TF++ L+ C+ +
Sbjct: 318 FDRMAERNVITWTSMIDGYGKNGLSDEALQLFEQMLRRHDDAIRPNHATFLSALSACARA 377
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GL+ E+F SME +H ++P+ C+ MP + VW
Sbjct: 378 GLLSRGQEVFQSMEREHALRPRMEHYACMVDLLGRFGSVRRAHDFIRGMPARPSSDVWAA 437
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ + +H +V A AA
Sbjct: 438 LLGAATLHGDVETAGLAA 455
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 42/196 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + ++S+ A++ +L GR I VK + F GSA I++YC CG
Sbjct: 292 VKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAF 351
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW MI G+A + + +A+ L+ ++ + K + VTFV++L CSHSG
Sbjct: 352 VIFNQIPEKDVTTWTTMITGFAFHGFGNKALELF-SVMQAETKPNDVTFVSVLAACSHSG 410
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV ++IF+SM+ + ++P CL MP + +WG +
Sbjct: 411 LVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAV 470
Query: 140 VSSCQVHSNVRLAKKA 155
+S+C++H N+ LA++A
Sbjct: 471 LSACRMHRNMELAERA 486
>gi|357450533|ref|XP_003595543.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484591|gb|AES65794.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 958
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 96/192 (50%), Gaps = 42/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F VL +C+ L+++ G+++ V+ G D+ + SA +++Y CG
Sbjct: 689 YAFGIVLRACSGLAAVNHGKEVHCMYVRKGGSKDVIIESALVDLYAKCGMVDFACTMFAS 748
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
+TWN M+ G+A+N +A++L++D+I G+K D +TFVA+L CSH+GLV
Sbjct: 749 MEVRNLITWNSMVSGFAQNGRGVEALALFEDMIKEGIKPDSITFVAVLFACSHAGLVDEG 808
Query: 109 VEIFNSMEHDHEVKP---------------------KCLMPYKD---DLVVWGDLVSSCQ 144
++F M ++ +KP +CL+ D D +W L+ +C
Sbjct: 809 RKVFTLM-GEYGIKPVVEHYNCMIDLLGRAGFIDEAECLLENADCRYDKSLWAALLGACT 867
Query: 145 VHSNVRLAKKAA 156
S+ R A++ A
Sbjct: 868 KCSDYRTAERVA 879
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 18/97 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F T+L++CA L L G+++ ++V G+G ++ V S+ +++Y CG
Sbjct: 586 VVPDGYTFGTILTACANLGLLRQGKEVHGKVVGLGFGGNVVVESSLLDMYGKCGCVRHSR 645
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKD 79
V+W M+ Y +N+ + + L ++
Sbjct: 646 IVFERLSDEKNNVSWTAMLGVYCQNKEYQNVLDLVRE 682
>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14330-like [Glycine max]
Length = 650
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 98/190 (51%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
TT+L CA++++L G++I +I+K D+ + ++ +++Y CG
Sbjct: 280 LTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMH 339
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+WN M+ G++ N + +A+ L+ ++I G++ +G+TFVA+L+ CSHSGL
Sbjct: 340 SKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKR 399
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
+F+++ D V+P CL +P + +WG L++SC+++
Sbjct: 400 LFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGSIWGSLLNSCRLY 459
Query: 147 SNVRLAKKAA 156
NV LA+ A
Sbjct: 460 GNVALAEVVA 469
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG----- 54
V P F F+ L +C+ L + +GR I +IVK G D V +A + +Y G
Sbjct: 171 VKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEV 230
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN +I G+A V + +S ++ + G+ +T +L C+
Sbjct: 231 LKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFSWITLTTMLPVCAQV 290
Query: 103 GLVYAEVEI 111
+++ EI
Sbjct: 291 TALHSGKEI 299
>gi|242066256|ref|XP_002454417.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
gi|241934248|gb|EES07393.1| hypothetical protein SORBIDRAFT_04g030430 [Sorghum bicolor]
Length = 703
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P VL++C++ L + +V++G+ N+ FV +A +++Y CG
Sbjct: 400 PDAITMVKVLAACSEFGGTRLAICLHGYLVRNGFNNNAFVAAALLDLYSKCGDIDSAVRV 459
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V W MI GY + ++A++LY+ +IAS ++ + VTFV++L+ CSHSGLV
Sbjct: 460 FEGTTEKDIVVWGSMIAGYGAHGLGQEAVALYQRMIASSIQPNSVTFVSVLSACSHSGLV 519
Query: 106 YAEVEIFNSMEHDHEVKPKC--------LMPYKDDLV----------------VWGDLVS 141
++IF+SM V P L+ +L W L++
Sbjct: 520 QEGIQIFDSMTQVFGVVPNAEHQSAMVDLLGRAGELQEAIRFIRGMDGRAVAHTWCALLA 579
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H+N +++K AA
Sbjct: 580 ACREHNNTKMSKVAA 594
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 19/119 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKD-GYGNDIFVGSAPINIYCNCG---------- 54
F F+ +L +CA L SL GR + ++ D FV +A + +Y CG
Sbjct: 98 FTFSLLLRACAALPSLAHGRAVHAVAIRSCTASEDAFVATAIVQMYARCGDMVGAINAYG 157
Query: 55 -------VTWNEMIHGYAENEYVEQAISLY-KDIIASGVKHDGVTFVAILTPCSHSGLV 105
V ++ GY +N E+A+ + ++++ GV VT V+ ++ + G V
Sbjct: 158 VLEKPDIVLRTSVVTGYEQNGMAEEALEFFARNVVGQGVMLTPVTLVSAMSAAAQLGHV 216
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V T + +S+ A+L + G+ +V++ G D+ + + ++ Y G
Sbjct: 196 VMLTPVTLVSAMSAAAQLGHVRKGQACHAYVVRNSLGYDLALVNTVLSFYVKIGDFQASM 255
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+TW+ MI GY ++ + + +Y++++ + V+ + VT V++L C+
Sbjct: 256 RLFEGMTDRDVITWSCMIKGYVQHGDAHEGLRMYREMVKARVQPNSVTLVSVLQACA 312
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +VL +CA + G+++ V G ++ V +A +++Y C
Sbjct: 297 VQPNSVTLVSVLQACALVVDAEEGKRVHRVAVSIGCELEVGVATALVDMYMKCSCHEEAM 356
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W +I G +NE +++ ++K ++ D +T V +L CS G
Sbjct: 357 CLFHRMPKKDVVAWAAVIGGLTQNELPGESLHVFKCMLLDDHVPDAITMVKVLAACSEFG 416
>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
Length = 762
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F +T+V +CA ++L +G Q +K G + ++ SA + +Y CG
Sbjct: 391 FIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFES 450
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V W +I GYA + +A+ ++ + + GV+ + VTF+A+LT CSHSGLV
Sbjct: 451 IDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEA 510
Query: 109 VEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQ 144
+ SM D+ VKP C+ MP++ D + W L+ C
Sbjct: 511 KQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCW 570
Query: 145 VHSNVRLAKKAA 156
H +++L K AA
Sbjct: 571 AHCDLKLGKIAA 582
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 23/119 (19%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQI---LTRIVKDGYGNDIFVGSAPINIYCNCG--- 54
V T + + +C KL SL GR I L R VK+ G+ + + + +YC+CG
Sbjct: 83 VSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGS---IENCLLRMYCDCGSCI 139
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+W +I YA+N +E+AI L+ D+ ASG++ + ++++L C
Sbjct: 140 DVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSC 198
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F F+ VL C L +GRQI + IVK G +++ VG+ ++ Y CG
Sbjct: 289 EFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFG 348
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W+ +I G++++ +E I ++ + + GV + + ++ C+
Sbjct: 349 RISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACA 401
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + ++L SC S L LG+QI + +++ +I V +A N+Y CG
Sbjct: 184 IRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAK 243
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
VTW ++ GY + + +E A+ L+ + GV+ D F +L C
Sbjct: 244 LVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVC 299
>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
[Vitis vinifera]
Length = 807
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +LS CA LS + L +++ +++ G G+ + V ++ I Y CG
Sbjct: 515 IRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDINSSL 574
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G + ++ I L+ ++ASG+K D VTF AIL+ CSH+G
Sbjct: 575 YTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAG 634
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
V + F SM D +KP+ C+ MP D +WG L
Sbjct: 635 RVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMPCTPDDRIWGSL 694
Query: 140 VSSCQVHSNVRLAKKAA 156
+ SC+ H + LA+ A
Sbjct: 695 LGSCKNHGDEILAEIVA 711
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 17/111 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
VL +C+ L+ G QI K G+ +D+FVGSA +++Y C
Sbjct: 421 LVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLS 480
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I GYA++E ++A+ ++D+ ++ + VT IL+ C+H
Sbjct: 481 QKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVCAH 531
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 22/124 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+YP + + + SC+ L SL GR+I +VK G + ++ S+ I +Y CG
Sbjct: 207 IYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAE 266
Query: 55 ----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTP 98
V WN MI GY N QA+ L+ ++ G+K D T V++ +
Sbjct: 267 NIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSL 326
Query: 99 CSHS 102
CS S
Sbjct: 327 CSES 330
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P ++ S C++ + G+QI I K G N+I V +A +++Y CG
Sbjct: 313 IKPDYSTMVSLFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGL 372
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ W+ +I A++ +A+ L+ + D VA+L CS
Sbjct: 373 KIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACS 429
Score = 36.2 bits (82), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 18/111 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F ++ + L ++ GRQI ++K G +D+ V ++ + +Y CG
Sbjct: 112 FPCLIKAFGGLCDVYKGRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMP 171
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCS 100
V+WN MI G+ ++ +++ ++ ++ G+ + V V+ + CS
Sbjct: 172 EVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNRVACVSSILSCS 222
>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
Length = 734
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F +T+V +CA ++L +G Q +K G + ++ SA + +Y CG
Sbjct: 391 FIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFES 450
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V W +I GYA + +A+ ++ + + GV+ + VTF+A+LT CSHSGLV
Sbjct: 451 IDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEA 510
Query: 109 VEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQ 144
+ SM D+ VKP C+ MP++ D + W L+ C
Sbjct: 511 KQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLXEALELINRMPFEPDAMSWKSLLGGCW 570
Query: 145 VHSNVRLAKKAA 156
H +++L K AA
Sbjct: 571 AHCDLKLGKIAA 582
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 23/119 (19%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQI---LTRIVKDGYGNDIFVGSAPINIYCNCG--- 54
V T + + +C KL SL GR I L R VK+ G+ + + + +YC+CG
Sbjct: 83 VSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGS---IENCLLRMYCDCGSXI 139
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+W +I YA+N +E+AI L+ D+ ASG++ + ++++L C
Sbjct: 140 DVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSC 198
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F F+ VL C L +G+QI + IVK G +++ VG+ ++ Y CG
Sbjct: 289 EFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFG 348
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W+ +I G++++ +E I ++ + + GV + + ++ C+
Sbjct: 349 RISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACA 401
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + ++L SC S L LG+Q+ + +++ +I V +A N+Y CG
Sbjct: 184 IRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAK 243
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
VTW ++ GY + + +E A+ L+ + GV+ D F +L C
Sbjct: 244 LVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVC 299
>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +L +C +++L G+ +++G ND++VGSA I++Y CG
Sbjct: 340 VKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASR 399
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN ++ GYA + +AI++++ + G K D V+F +L+ C+ G
Sbjct: 400 LCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGG 459
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L F+SM +H V+ + C+ MP++ D VWG L
Sbjct: 460 LTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGAL 519
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC+VH+ V L + AA
Sbjct: 520 LSSCRVHNRVDLGEIAA 536
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 25/148 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT------ 56
P ++VL + L +G QI ++K G G D FV SA I++Y C
Sbjct: 208 PDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGV 267
Query: 57 WNEM-----------IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+NEM + G + N V+ A+ ++K G+ + V++ +++ CS +G
Sbjct: 268 FNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQF--KGMDLNVVSWTSMIASCSQNGKD 325
Query: 106 YAEVEIFNSMEHDHEVKPK-----CLMP 128
+E+F M+ + VKP CL+P
Sbjct: 326 MEALELFREMQIE-GVKPNSVTIPCLLP 352
>gi|356529649|ref|XP_003533401.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Glycine max]
Length = 427
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 93/192 (48%), Gaps = 39/192 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P + TVLS C++L L +G+ + ++ Y ++FVG+ IN+Y CG+
Sbjct: 149 VVPDDYTVVTVLSVCSRLGDLEMGKXVHVYAERNAYKGNLFVGNGLINMYAKCGIIEKAL 208
Query: 56 ---------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
TWN +I+G A + ++ A+SL++ + ++G + DGVT V IL+ C+ GL
Sbjct: 209 DVFNGLDVITWNTIINGLAMHGHMANALSLFEQMKSTGERPDGVTLVGILSACTQMGLAR 268
Query: 107 AEVEIFNSMEHDHEVKPK-----CL------------------MPYKDDLVVWGDLVSSC 143
F SM D+ + P+ C+ MP + D V+ +C
Sbjct: 269 DRFMHFRSMVDDYSIVPQIEHYGCMVDLLGRXLIDQTVNFVRKMPMEPDAVIXA--ARAC 326
Query: 144 QVHSNVRLAKKA 155
+++ NV +A+ A
Sbjct: 327 RMYKNVEMAELA 338
>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 919
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F + +S+ A L+ + G+QI R++K GY ++ + +A I++Y CG
Sbjct: 548 FTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFE 607
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN +I +++ +A+ L+ + G+K VTFV +LT CSH GLV
Sbjct: 608 MTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEG 667
Query: 109 VEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQ 144
+ F SM ++H + P+ C+ MP D +VW L+S+C+
Sbjct: 668 LCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACK 727
Query: 145 VHSNVRLAKKAA 156
VH N+ + + AA
Sbjct: 728 VHKNLEIGEFAA 739
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V PT + +++LS+C K LGR I ++ K G+ ++ FVG+A I++Y C
Sbjct: 139 VVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLAD 198
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VT+N +I G+A+ + ++A+ ++ ++ SG+ D VT ++L CS G
Sbjct: 199 RVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVG 258
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F + +L +C + LG QI + +K+G+ +D++V I++Y G
Sbjct: 341 VRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQ 400
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY ++E+ ++A+ +K++ A G+ D + + ++ C+
Sbjct: 401 RILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIK 460
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140
V+ +I + + Y D+ +W LV
Sbjct: 461 AVHQGSQIHARVY---------VSGYSADVSIWNGLV 488
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
++P + +S+CA + ++ G QI R+ GY D+ + + + +Y C
Sbjct: 442 IWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAF 501
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
G+TWN +I G+A++ E+A+ ++ + +G K++ TFV+ ++ ++
Sbjct: 502 SSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASAN 559
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++L++C+ + L G+Q+ + ++K G D + + +++Y G
Sbjct: 242 PDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQI 301
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN M+ Y + + + ++ ++ ++A+GV+ + T+ +L C+H+G
Sbjct: 302 FDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTG 359
Score = 38.5 bits (88), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 24 GRQILTRIVKDGYGNDIFVGSAPI---NIYCNCGVTWNEMIHGYAENEYVEQAISLYKDI 80
G +I+ ++ D Y FV A + V+W ++ GYA+N E+A+ LY+++
Sbjct: 75 GYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREM 134
Query: 81 IASGVKHDGVTFVAILTPCSHSGL 104
SGV +IL+ C+ + L
Sbjct: 135 HRSGVVPTPYVLSSILSACTKTEL 158
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 40/190 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F +LSSC+ + +L +G ++ + G ++FVG+A I++Y CG
Sbjct: 212 FTLVGLLSSCSHVGALNMGVKLHRIASEKGLLRNVFVGNALIDMYAKCGSLDGALEVFNG 271
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEV 109
TWN MI G+ + + ++AI + ++ +GV+ + + F+ +L CSH GLV V
Sbjct: 272 MPRDAFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCSHQGLVEEGV 331
Query: 110 EIFNSMEHDHEVKP-----KCLM-------------------PYKDDLVVWGDLVSSCQV 145
E F+ M VKP C++ P++DD V+W L+SS ++
Sbjct: 332 EFFHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIGDSPWQDDPVLWRILLSSSKI 391
Query: 146 HSNVRLAKKA 155
H NV + + A
Sbjct: 392 HKNVVIGEIA 401
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F+ L +C ++ +L ++ I++ GY D+ V + + Y G
Sbjct: 108 PDTFTFSFTLKACERIKALKKCEEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMV 167
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI Y++ Y ++A+ +Y + V DG T V +L+ CSH G +
Sbjct: 168 FDNMPERDLVAWNAMISCYSQAGYHQEALRVYDYMRNENVGVDGFTLVGLLSSCSHVGAL 227
Query: 106 YAEVEI 111
V++
Sbjct: 228 NMGVKL 233
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 92/179 (51%), Gaps = 41/179 (22%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------- 55
T++LS+CA++ +L +GR I + + ND+F+ +A +++Y CG
Sbjct: 293 TSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPR 352
Query: 56 ----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
+WN M+ G A + + A+ L+K + ++GV + +TFVA+L+ CSH G V +
Sbjct: 353 KNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGSVEEGWKK 412
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
FN M+ + + PK C+ MP + ++V+WG L+++C+VH
Sbjct: 413 FNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGALLNACKVH 471
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI Y +N +A+ L+K+++ +GV D + +IL+ C+ G
Sbjct: 255 VSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIG 303
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 34/155 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F F VL + S GR + ++VK G+ D+F +A I++Y CG
Sbjct: 126 KFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFD 185
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
VTWN MI G E+A L+ ++ V ++ A++ S G V
Sbjct: 186 EMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNVG----SWNAVVGGYSKLGHVDI 241
Query: 108 EVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSS 142
+F+ LMP + D+V WG ++S+
Sbjct: 242 ARSLFD------------LMPER-DVVSWGSMISA 263
>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 596
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P + ++VLS+CA + +L GR++ ++K+ + G+ I++Y CG
Sbjct: 302 VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAI 361
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW MI+G+A + Y A L+ +++S V + VTF+A+L+ C+H G
Sbjct: 362 LVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGG 421
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +F SM+ ++PK C+ MP + VVWG L
Sbjct: 422 LVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGAL 481
Query: 140 VSSCQVHSNVRLAKKAA 156
SC +H + L K AA
Sbjct: 482 FGSCLLHKDYELGKYAA 498
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 59/124 (47%), Gaps = 18/124 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG----- 54
V + +VL + K+ + GR + ++ G D+F+GS+ +++Y C
Sbjct: 200 VAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDA 259
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
VTW +I GY ++ ++ + ++++++ S V + T ++L+ C+H
Sbjct: 260 QKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHV 319
Query: 103 GLVY 106
G ++
Sbjct: 320 GALH 323
Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 22/115 (19%)
Query: 1 VYPTQFPFTTVLSSCAKL--SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---- 54
V P++ F +L + KL S+ F Q IVK G +D FV ++ I+ Y + G
Sbjct: 100 VIPSRHTFPPLLKAVFKLRDSNPF---QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDF 156
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
VTW MI G+ N +A+ + ++ +GV + +T V++L
Sbjct: 157 ASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVL 211
>gi|297746034|emb|CBI16090.3| unnamed protein product [Vitis vinifera]
Length = 458
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 42/193 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F FT+VL + +S+L G+QI ++K GYG+++ V + +++Y CG
Sbjct: 215 FTFTSVLRAIGMISTLDEGKQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSL 274
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
++WN ++ G A + Y +A+ L++ + SGVK D TF+ +L+ C H GL+
Sbjct: 275 MDRHDVISWNSLLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRHVGLLDKG 334
Query: 109 VEIFNSMEHDHEVKPKC-------------------------LMPYKDDLVVWGDLVSSC 143
+E F+ M +D+ ++ MP + V+ L+S+C
Sbjct: 335 LEYFDLMRNDYSLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPGPSVYKALLSAC 394
Query: 144 QVHSNVRLAKKAA 156
QVH NV +A + A
Sbjct: 395 QVHGNVEIAVRCA 407
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F + VL C ++ LG Q+ +K G+ +I VG+ I++Y
Sbjct: 8 PTPFSVSAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSKGWNIDASRLM 67
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+TW M+ GYA + A+ L +D+ G++ + VT+ +L+ S S
Sbjct: 68 FDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSFSSS 124
>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
Length = 586
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 41/187 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F + V+ + A L++ LGRQ+ ++ G+ +++ VG+A I++Y C
Sbjct: 215 FVLSIVIGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEG 274
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
++W M+ G A++ E+A++LY ++ +G K + VTFV ++ CSH+GLV
Sbjct: 275 ITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKG 334
Query: 109 VEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVSSCQ 144
++F SM++++ + P+ MPY+ D WG L+S+C
Sbjct: 335 RQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACT 394
Query: 145 VHSNVRL 151
+ + +
Sbjct: 395 KYKDAEM 401
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P F ++V S A+L S LGRQ+ V Y D V S+ +++YC CG
Sbjct: 77 LHPDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGR 136
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W ++ GYA N E+A+ L++ + + + A+++ ++G
Sbjct: 137 KVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNL----FAWTALISGLVNTG 192
Query: 104 LVYAEVEIFNSMEHD 118
VE+F M D
Sbjct: 193 ESVGAVELFVEMRRD 207
>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 635
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 95/194 (48%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV-------- 55
QF ++V+ +C+ L++L G+Q+ I K G+G+++FV S+ +++Y CG
Sbjct: 262 NQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIF 321
Query: 56 ---------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
WN +I G+A++ ++ + L++ + G+ + VTF ++L+ C H+GLV
Sbjct: 322 SEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVE 381
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
F M + + P C+ +P+ +WG L++S
Sbjct: 382 EGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 441
Query: 143 CQVHSNVRLAKKAA 156
C+V+ N+ LA+ AA
Sbjct: 442 CRVYKNLELAEVAA 455
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++F ++VLS+C +++ VK +++VG+A +++Y CG
Sbjct: 161 SEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVF 220
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTW+ M+ GY +N+ E+A+ LY+ ++ + T +++ CS+
Sbjct: 221 ESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSN 275
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 17/106 (16%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+L CA+ ++ + +I++ D+ + + IN Y CG
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN MI Y N +A+ ++ ++ G K T ++L+ C
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 172
>gi|359481497|ref|XP_002273989.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Vitis vinifera]
Length = 510
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 96/195 (49%), Gaps = 42/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P FT +LS+C SL GR + ++ G+ + + V +A I++YC CG
Sbjct: 212 PNDLTFTCLLSTCTGGGSLGRGRSAHCQTIEMGFDSYVHVANALISMYCKCGNVEDAYYI 271
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI G+A++ QAI L++++ +K D +TF+ +L+ C H GLV
Sbjct: 272 FERMDGKDIVSWNSMIAGHAQHGLAVQAIDLFEEMKKQKLKPDAITFLGVLSSCRHVGLV 331
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
FNSM +H VKP+ C+ MP + ++WG L+S
Sbjct: 332 KQGQFYFNSMV-EHGVKPELDHFACVVDLLGRAGLLEEARDFIVKMPIHPNAIIWGSLLS 390
Query: 142 SCQVHSNVRLAKKAA 156
SC++H +V L +AA
Sbjct: 391 SCRLHGSVWLGIEAA 405
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ LS CA SL G Q ++ G+ +++VGS I+ Y CG
Sbjct: 116 LSHALSLCASSRSLKSGVQFHCLAIRTGFVGNVYVGSCLISFYSKCGELCHAYRVFEEMP 175
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W +I G+A+ V+ + LY + S +K + +TF +L+ C+
Sbjct: 176 VKNVVSWTAIIAGFAQEWLVDGCLELYSRMRNSTLKPNDLTFTCLLSTCT 225
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 93/193 (48%), Gaps = 42/193 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + VLS+C ++ L +G+ + I + + DI + ++ +++Y CG
Sbjct: 276 PDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRL 335
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I G A + AI+ ++ ++ + DG+TFVA+L+ CSH GL+
Sbjct: 336 FREMCNRNVVSWNVIIGGLAMHGRALDAITFFRSMVRN-TSPDGITFVALLSSCSHGGLL 394
Query: 106 YAEVEIFNSMEH----DHEV-----------------KPKCL---MPYKDDLVVWGDLVS 141
F SM H HEV K CL MP K D+VVWG L+
Sbjct: 395 ETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLG 454
Query: 142 SCQVHSNVRLAKK 154
+C++H NV++ K+
Sbjct: 455 ACRIHGNVKIGKQ 467
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F V+ +C + + + +K G+ +FV +A ++ Y + G
Sbjct: 41 VLPNEFTLPFVVKACTRAQAWDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDSR 100
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GYA+ +A +L+ ++ G D T ++L CS G
Sbjct: 101 RFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEG 160
Score = 42.0 bits (97), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 48/147 (32%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F ++L +C++ +L GR + ++ G D+ +G A +++Y CG
Sbjct: 146 EFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSKCGDLCMARRCFE 205
Query: 55 --------------------------------------VTWNEMIHGYAENEYVEQAISL 76
V+WN MI Y + +A+ L
Sbjct: 206 MMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTMISCYVQRGQYHEALDL 265
Query: 77 YKDIIASGVKHDGVTFVAILTPCSHSG 103
YK + + G D T V +L+ C G
Sbjct: 266 YKQMQSHGPAPDEATLVPVLSACGRIG 292
>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
Length = 1145
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 40/189 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
T +L L + LG+QI T +K G + + V +A +++Y C
Sbjct: 553 LTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSSADSLKVFDSMEE 612
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
TWN +I GYA++ +AI +Y+ ++++GV + VTFV +L CSHSGLV +
Sbjct: 613 RDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQF 672
Query: 112 FNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F SM D+ + P C+ MP + D V+W L+ +C++H
Sbjct: 673 FKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHK 732
Query: 148 NVRLAKKAA 156
NV + ++AA
Sbjct: 733 NVEIGRRAA 741
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 21/125 (16%)
Query: 14 SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY-----------------CNCGVT 56
+C+ + +L G+Q+ + VK G + +V +A I +Y V+
Sbjct: 427 ACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVS 486
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116
+N + +N ++A +D+ + D V++ I++ C+ + VEIF SM
Sbjct: 487 YNSFMSALVQNNLFDEA----RDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSML 542
Query: 117 HDHEV 121
H+ E+
Sbjct: 543 HEREL 547
>gi|255561305|ref|XP_002521663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539054|gb|EEF40650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 578
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P V+++C L+SL G IVK G D ++G+A IN+Y CG
Sbjct: 329 PNSVTLLAVITACTTLTSLKNGYGTHGYIVKCGLNFDTYIGNALINMYSKCGCVVASHQI 388
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ +I Y + + ++A+ L+ ++ GV+ D +TF+A+L+ C+HSGLV
Sbjct: 389 FKEMHIKDSVSWSTLITAYGLHGHGKEALCLFHEMQLQGVEPDAMTFLAVLSACNHSGLV 448
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+IF++++ D +V CL MP K +W LVS
Sbjct: 449 KEGQQIFDNVKKDGKVSLTVEHYACLVDLLGKSGKVDDAFDILRAMPMKPSTTIWSSLVS 508
Query: 142 SCQVHSNVRLAKKAA 156
+C++H + +A++ A
Sbjct: 509 ACKIHGRLEIAERLA 523
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 18/129 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCG----- 54
+ P +V+S C +L + LGR I ++ DG +IFV ++ ++ Y G
Sbjct: 123 IVPKPELVASVVSVCVRLGDMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGDSLMA 182
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+W ++ G + N A+ ++ + +GV+ + VT +AIL +
Sbjct: 183 LRVFDQIEVKNVVSWTALVSGCSANLDYNMALDCFRAMQINGVRPNRVTLIAILPAFAEL 242
Query: 103 GLVYAEVEI 111
G EI
Sbjct: 243 GCAKTGKEI 251
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/192 (17%), Positives = 74/192 (38%), Gaps = 40/192 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+Y + +V+ +C+ + G Q+ + ++K G +D + ++ I+ Y
Sbjct: 22 IYANAYIIPSVIKACSFSNCHHFGIQLYSIVLKSGLDSDFVICNSFISFYAKSSCTESAL 81
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH-- 101
++WN +I+GY +N Y Q ++K++ G+ ++++ C
Sbjct: 82 KVFDTMPLKDPISWNCIINGYFQNGYFTQGFIMFKEMYECGIVPKPELVASVVSVCVRLG 141
Query: 102 --------------SGLVYAEVEIFNSMEHDHEVKPKCLMPYK-------DDLVVWGDLV 140
G + E+ + S+ + LM + ++V W LV
Sbjct: 142 DMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGDSLMALRVFDQIEVKNVVSWTALV 201
Query: 141 SSCQVHSNVRLA 152
S C + + +A
Sbjct: 202 SGCSANLDYNMA 213
>gi|224089599|ref|XP_002308772.1| predicted protein [Populus trichocarpa]
gi|222854748|gb|EEE92295.1| predicted protein [Populus trichocarpa]
Length = 320
Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T+L +C + ++ LG+Q+ ++ +IFV ++ +++Y G
Sbjct: 26 VMPNAVTLATILPACNPVGNIDLGKQLHGVSIRLLLDKNIFVSTSLVDMYSKSGSINYAE 85
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VT+ MI Y ++ E+A+SL+ + SG++ D +TF+A+L+ CSHSG
Sbjct: 86 SVFTKLPDKNSVTYTTMILAYGQHGMGERALSLFHSMKKSGIEPDAITFIAVLSACSHSG 145
Query: 104 LVYAEVEIFNSMEHDHEVKP-------------------------KCLMPYKDDLVVWGD 138
LV ++IF SME D +++P K L + L +WG
Sbjct: 146 LVDEGLQIFESMEKDFKIQPSTPHYCCVTDMLGRVGRVVEAYEFVKQLGEAGNVLEIWGS 205
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C++H +V L + A
Sbjct: 206 LLGACRLHEHVELGEVVA 223
>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 585
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + F+TVL S A L++L G I +I+K GY ++ + + I +Y CG
Sbjct: 209 ILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAY 268
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI Y + Q I L++ +++ G++ VTFV +L+ CSH+G
Sbjct: 269 QVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTG 328
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
V + FNSM+ H++ P C+ MP K VWG L
Sbjct: 329 RVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGAL 388
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ + N+++ ++AA
Sbjct: 389 LGACRKYGNLKMGREAA 405
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 18/120 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP QF F+++LS+ A + G+Q+ + I K G+ +IFVG+A +++Y C
Sbjct: 7 YPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVR 66
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSG 103
V+WN MI G+ N ++A+ ++KD++ V + V+ ++L+ C++ G
Sbjct: 67 VFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMG 126
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 26/158 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + ++VLS+CA + L GRQ+ +VK G +V ++ +++Y C
Sbjct: 108 VIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGV 167
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN ++ G+ +N+ E+A + + + G+ D +F +L +
Sbjct: 168 KLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLA 227
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
++ I HD +K + Y ++ + G L++
Sbjct: 228 ALHQGTAI-----HDQIIK----LGYVKNMCILGSLIT 256
>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
Length = 839
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 95/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + TVL +CA L+++ LG+QI +I+K D ++ S +++Y CG
Sbjct: 536 VKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSL 595
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GYA + +A+ +++ + + V + TFVA+L CSH G
Sbjct: 596 LMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVG 655
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ F M ++++P+ C+ MP + D V+W L
Sbjct: 656 LLDDGCRYFYLMTSRYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTL 715
Query: 140 VSSCQVHSNVRLAKKAA 156
+S C++ +V +A+ AA
Sbjct: 716 LSICKIRQDVEVAETAA 732
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F + +VL +CA L SL G + + +K G G D FV S +++YC CG
Sbjct: 437 PDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKL 496
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I G++ N+ E+A + +++ GVK D T+ +L C++
Sbjct: 497 HDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCAN 552
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------------- 53
+ V S+CA++ G Q+ +K G+ D+ V +A +++Y C
Sbjct: 341 LSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEME 400
Query: 54 ---GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I +NE E I+ +++ G++ D T+ ++L C+
Sbjct: 401 QRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACA 450
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P + +L +C L L LG QI VK G D+ GSA +++Y C
Sbjct: 132 VAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDAL 191
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W I G +NE + + L+ + G+ + ++ C+
Sbjct: 192 RFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCA 248
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV-------- 55
+Q + +V SCA ++ L RQ+ +K+ + D VG+A +++Y
Sbjct: 236 SQPAYASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAF 295
Query: 56 ---------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
N M+ G +A+ L++ + SG+ D V+ + + C+
Sbjct: 296 FSLPNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAE 350
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 41/189 (21%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
+ LS+CA L +L G++I +++ + +D+F SA I++Y CG
Sbjct: 555 SAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEE 614
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I Y + ++ +++L+ ++ G++ D VTF+AI++ C H+G V +
Sbjct: 615 KNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHY 674
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F M + + + C+ MP+ D VWG L+ +C++H
Sbjct: 675 FRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHG 734
Query: 148 NVRLAKKAA 156
NV LA+ A+
Sbjct: 735 NVELAEVAS 743
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 17/111 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+VL +CA L++L LG+++ I+K+G+G +VGSA +++Y CG
Sbjct: 453 LASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS 512
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN MI ++N E+AI L++ + +G K+D V+ A L+ C++
Sbjct: 513 DKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACAN 563
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 41/179 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC--NC------- 53
P ++ F V+ +C L+S+ LGR + +I G+ D+FVGS+ I Y C
Sbjct: 145 PDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYL 204
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
GV WN M++GY +N + A ++ ++ + + VTF +L+ C+ ++
Sbjct: 205 FDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMI 264
Query: 106 YAEVEIF-----NSMEHDHEVK-------PKC-----------LMPYKDDLVVWGDLVS 141
++ + +E D V KC +MP K DLV W ++S
Sbjct: 265 NFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMP-KTDLVTWNGMIS 322
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F VLS CA + G Q+ +V G D V + + +Y CG
Sbjct: 246 PNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRL 305
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN MI GY +N ++++A L+ ++I++ +K D +TF + L S +
Sbjct: 306 FDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATL 365
Query: 106 YAEVEI 111
EI
Sbjct: 366 RQGKEI 371
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F++ L ++ ++L G++I I+++G D+F+ SA I+IY C
Sbjct: 347 PDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKI 406
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V MI GY N A+ +++ ++ ++ + VT ++L C+
Sbjct: 407 FDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACA 461
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
++L +C S L GRQ +++ +G G + +G+ + +Y CG
Sbjct: 49 LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
WN MI G+ + A+ Y ++ G D TF ++ C
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKAC 157
>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 959
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ LS+CA +L+ G+++ +V++ + +D FV S I++Y CG
Sbjct: 584 LSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMD 643
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN +I Y + + + L+ +++ +G++ D VTF+ I++ C H+GLV +
Sbjct: 644 WKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIY 703
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
F M ++ + + C+ MP+ D WG L+ +C++H
Sbjct: 704 YFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLH 763
Query: 147 SNVRLAKKAA 156
NV LAK A+
Sbjct: 764 GNVELAKLAS 773
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F +LS CA + G Q+ +++ G+ +D V + I +Y CG
Sbjct: 274 VKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGNLFDAR 333
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN +I GY +N + ++A++L+K ++ SGVK D +TF + L SG
Sbjct: 334 KIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSG 393
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F V+ +C L+++ L + + G+ D+F+GS+ I +Y + G
Sbjct: 173 VAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAK 232
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN M++GY +N A+ ++++ S VK + V+FV +L+ C+ G
Sbjct: 233 YLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRG 292
Query: 104 LVYAEVEI 111
+V A +++
Sbjct: 293 IVRAGIQL 300
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +VL +CA L+SL LG+++ I+K G N VGS+ +Y G
Sbjct: 478 PNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQF 537
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI +++N E AI L++ + SG K D V+ A L+ C++ +
Sbjct: 538 FRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPAL 597
Query: 106 YAEVEI 111
Y E+
Sbjct: 598 YYGKEL 603
Score = 37.0 bits (84), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F + L S K SL +++ + IV+ G D+++ SA ++IY G
Sbjct: 382 FASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNT 441
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
MI GY N +A++L++ +I G+ + +T ++L C+
Sbjct: 442 LVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACA 491
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 41/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F ++VL++CA L +L GR I + + D +G+A +++Y CG
Sbjct: 289 IRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAW 348
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN MI G + E AI L+ + + +G+T + +L+ C+HSG
Sbjct: 349 DVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSG 408
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
+V + IFNSME + ++P C+ MP + VWG L
Sbjct: 409 MVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGAL 468
Query: 140 VSSCQVHSNVRLAKK 154
+ +C+ H +V L ++
Sbjct: 469 LGACRKHGDVELGER 483
>gi|413933941|gb|AFW68492.1| hypothetical protein ZEAMMB73_143921 [Zea mays]
Length = 564
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F F +++ CA L G Q+ +++K +D FVGS + +Y NCG
Sbjct: 319 VEPNEFTFASMIKGCAMHDLLEQGAQLHAQVLKTNLISDSFVGSTLVYMYGNCGLISLSL 378
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN +I+ YA++ + AI + + +SG++ + +TFV +LT CSH+G
Sbjct: 379 QLFNEIGYRTEIAWNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITFVCLLTACSHAG 438
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F+SM+ H ++PK C+ MP K W L
Sbjct: 439 LVDEGLGYFHSMKDAHGIEPKAEHYSCIIDMYGRAGRLDEAEKFISEMPVKPSAYAWCSL 498
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++ N L + AA
Sbjct: 499 LGACRMQGNKELGEVAA 515
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 17/102 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PTQF ++ + A LS+ G Q+ ++ G+ N++FV S ++Y CG
Sbjct: 115 IAPTQFALSSAARAAAALSAPRPGTQLHCIGIRLGFDNELFVASNLADMYSKCGLLHEAC 174
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGV 85
VTW MI GYA+N +E AI +++D+ G+
Sbjct: 175 RVFDQMPQKDAVTWTTMIDGYAKNGSLEAAILIFRDMKCEGL 216
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V Q F + LS+ L + GR + I+K G+ + V +A +++Y G
Sbjct: 217 VGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKSGDLENAS 276
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+ +I GY E +E+A+ Y ++ GV+ + TF +++ C+
Sbjct: 277 RVVSIDPGGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPNEFTFASMIKGCAMH 336
Query: 103 GLV 105
L+
Sbjct: 337 DLL 339
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + TVLS+CA L +L LG + +K G +++ + ++ I++Y CG
Sbjct: 141 VEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSLIDLYSRCGAIELAR 200
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G A N + E+A+ + + G K + V+F LT CSH+G
Sbjct: 201 QVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPNDVSFTGALTACSHTG 260
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV ++ F+ ME H++ P+ C+ MP K + VV G L
Sbjct: 261 LVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQNMPMKPNEVVVGSL 320
Query: 140 VSSCQVHSNVRLAKK 154
+++C+ +V LA++
Sbjct: 321 LAACRTRGDVELAER 335
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 24/134 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSL--FLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG----- 54
P F T+LS CA L S LG + K G ++ VG+A +++Y CG
Sbjct: 8 PNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVELS 67
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+WN MI G+ N + +AI ++ ++ GV +++ ++
Sbjct: 68 RLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGV----ISWTVLINGFVKM 123
Query: 103 GLVYAEVEIFNSME 116
GL +E F M+
Sbjct: 124 GLFEEALEWFRKMQ 137
>gi|222616388|gb|EEE52520.1| hypothetical protein OsJ_34732 [Oryza sativa Japonica Group]
Length = 462
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 41/187 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F + V+ A L++ LGRQ+ ++ G+ +++ VG+A I++Y C
Sbjct: 91 FVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEG 150
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
++W M+ G A++ E+A++LY ++ +G K + VTFV ++ CSH+GLV
Sbjct: 151 ITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKG 210
Query: 109 VEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVSSCQ 144
++F SM++++ + P+ MPY+ D WG L+S+C
Sbjct: 211 RQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACT 270
Query: 145 VHSNVRL 151
+ + +
Sbjct: 271 KYKDAEM 277
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 91/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V +F +V+++CA+L +L G + + G D+FVG+A I++Y CG
Sbjct: 289 VRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERAL 348
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW +I G A N E+AI ++ ++ + D VTFV +LT C+H+G
Sbjct: 349 DVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAG 408
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV E F SM + + P CL MP K + +WG L
Sbjct: 409 LVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTL 468
Query: 140 VSSCQVHSNVRLAKKAA 156
++SC+V+ N + + AA
Sbjct: 469 LASCRVYGNSEIGELAA 485
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 21/130 (16%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
T + +VLS+C K L LG Q+ R+++ G D V +A +++Y CG
Sbjct: 160 TAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLF 219
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
+W +I G + V++A +D+ + D + + A++ G
Sbjct: 220 EGMQMRSMASWTSVISGLVRSGQVDRA----RDLFDHMPERDTIAWTAMIDGYVQVGRFR 275
Query: 107 AEVEIFNSME 116
+E F M+
Sbjct: 276 DALETFRYMQ 285
>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 561
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---- 56
V P ++L +CA S L G ++ +K G+ +DI+V +A I++Y G
Sbjct: 185 VKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLKVAY 244
Query: 57 -------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN M+ GYA + + E+ + LY + ++ D +TF A+L+ C +SG
Sbjct: 245 NVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACKNSG 304
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F+SM+ D+ + P C+ MP K D +WG L
Sbjct: 305 LVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASIWGAL 364
Query: 140 VSSCQVHSNVRLAKKAA 156
++SC++H N++LA+ AA
Sbjct: 365 LASCKIHKNIKLAEIAA 381
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 55/98 (56%), Gaps = 15/98 (15%)
Query: 26 QILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85
++L ++V++G D+ VTWN ++ GY+ +++A+++ I +SG+
Sbjct: 105 KLLNQMVEEGITPDL--------------VTWNGLVSGYSMQGRIDEALTIINRIKSSGI 150
Query: 86 KHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP 123
+ V++ A+++ CS + ++IF+ M+ ++ VKP
Sbjct: 151 TPNVVSWTALISGCSQNEKYMDALKIFSQMQAEN-VKP 187
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 26/158 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC----------- 51
P T+ L + +L LG++I I++ D++V ++ +++Y
Sbjct: 16 PDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDMYVKNDCLEKAQAV 75
Query: 52 -----NCGV-TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
N V WN +I GY+ +A+ L ++ G+ D VT+ +++ S G +
Sbjct: 76 LHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTWNGLVSGYSMQGRI 135
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143
+ I N +K + P ++V W L+S C
Sbjct: 136 DEALTIIN------RIKSSGITP---NVVSWTALISGC 164
>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 92/190 (48%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
++V+ +CA + LG+Q+ ++ GY + +F+ +A +++Y C
Sbjct: 247 LSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMR 306
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+W +I G A++ E+A++LY D++ +GVK + VTFV ++ CSH GLV
Sbjct: 307 RKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRA 366
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
+F SM D ++P CL MP K D W L+S+C+ H
Sbjct: 367 LFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHH 426
Query: 147 SNVRLAKKAA 156
N ++A + A
Sbjct: 427 GNTKMAVRIA 436
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 19/96 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLF--LGRQILTRIVKDGYGNDIFVGSAPINIYCN-------- 52
P F F++++ +CA L S+ LG+Q+ R + + D V S+ +++Y
Sbjct: 107 PDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGR 166
Query: 53 ---------CGVTWNEMIHGYAENEYVEQAISLYKD 79
++W MI GYA + +A+ L+++
Sbjct: 167 AVFDSIFELSSISWTAMISGYARSGRKLEALELFRE 202
>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
Length = 864
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 95/194 (48%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV-------- 55
QF ++V+ +C+ L++L G+Q+ I K G+G+++FV S+ +++Y CG
Sbjct: 254 NQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIF 313
Query: 56 ---------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
WN +I G+A++ ++ + L++ + G+ + VTF ++L+ C H+GLV
Sbjct: 314 SEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVE 373
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
F M + + P C+ +P+ +WG L++S
Sbjct: 374 EGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 433
Query: 143 CQVHSNVRLAKKAA 156
C+V+ N+ LA+ AA
Sbjct: 434 CRVYKNLELAEVAA 447
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++F ++VLS+C +++ VK +++VG+A +++Y CG
Sbjct: 153 SEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVF 212
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTW+ M+ GY +N+ E+A+ LY+ ++ + T +++ CS+
Sbjct: 213 ESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSN 267
Score = 38.9 bits (89), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 17/106 (16%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+L CA+ ++ + +I++ D+ + + IN Y CG
Sbjct: 59 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 118
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN MI Y N +A+ ++ ++ G K T ++L+ C
Sbjct: 119 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 164
>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
Length = 810
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P TVL SC ++S+L LG++I I + + + + +A +++Y NCG
Sbjct: 288 IEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEAR 347
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I Y + + +AI L++ + G++ D + FVAIL CSH+G
Sbjct: 348 DVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAG 407
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ F SM + + PK C+ MP K + VWG L
Sbjct: 408 LLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGAL 467
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++HSN+ + AA
Sbjct: 468 LGACRIHSNMDIGLLAA 484
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 18/113 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P + + L SCA L LGRQI + + G ++FV + I++Y CG
Sbjct: 119 FPDHYTYPLALKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQ 178
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAIL 96
V+WN MI G+A +A+ ++++++A K D T +IL
Sbjct: 179 MFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASIL 231
Score = 36.2 bits (82), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++WN M+ Y NE +A+ L+ + G++ D VT +L C
Sbjct: 258 ISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSC 302
>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
mitochondrial-like [Glycine max]
Length = 647
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 93/201 (46%), Gaps = 53/201 (26%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPIN-----IYCNCG--- 54
P + ++V+S C L +L+LG+QI + K I + +PIN +Y CG
Sbjct: 401 PDRHTLSSVMSVCTGLVNLYLGKQIHQLVTK------IVIPDSPINNSLITMYSRCGAIV 454
Query: 55 ---------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
+TWN MI GYA + +A+ L+K + + +TF++++ C
Sbjct: 455 DACTVFNEIKLYKDVITWNAMIGGYASHGLAAEALELFKLMKRLKIHPTYITFISVMNAC 514
Query: 100 SHSGLVYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVV 135
+H+GLV F SM +D+ ++ + MP+K D V
Sbjct: 515 AHAGLVEEGRRQFKSMINDYGIERRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAV 574
Query: 136 WGDLVSSCQVHSNVRLAKKAA 156
WG L+S+C+VH+NV LA AA
Sbjct: 575 WGALLSACRVHNNVELALVAA 595
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 14/106 (13%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
++WN +I GY +NE + AI L+ + G + D T ++++ C+ +Y +I
Sbjct: 369 ISWNSIIAGYEKNEDYKGAIQLFSRMQFEGERPDRHTLSSVMSVCTGLVNLYLGKQI--- 425
Query: 115 MEHDHEVKPKCLM---PYKDDLVVW----GDLVSSCQVHSNVRLAK 153
H++ K ++ P + L+ G +V +C V + ++L K
Sbjct: 426 ----HQLVTKIVIPDSPINNSLITMYSRCGAIVDACTVFNEIKLYK 467
>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 41/189 (21%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
+ LS+CA L +L G++I +++ + +D+F SA I++Y CG
Sbjct: 456 SAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTMEE 515
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I Y + ++ +++L+ ++ G++ D VTF+AI++ C H+G V +
Sbjct: 516 KNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIHY 575
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F M + + + C+ MP+ D VWG L+ +C++H
Sbjct: 576 FRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLHG 635
Query: 148 NVRLAKKAA 156
NV LA+ A+
Sbjct: 636 NVELAEVAS 644
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 62/111 (55%), Gaps = 17/111 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+VL +CA L++L LG+++ I+K+G+G +VGSA +++Y CG
Sbjct: 354 LASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGIS 413
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN MI ++N E+AI L++ + +G K+D V+ A L+ C++
Sbjct: 414 DKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACAN 464
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC--NC------- 53
P ++ F V+ +C L+S+ LGR + +I G+ D+FVGS+ I Y C
Sbjct: 145 PDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYL 204
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
GV WN M++GY +N + A ++ ++ + + VTF +L+ C+
Sbjct: 205 FDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCA 259
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
++L +C S L GRQ +++ +G G + +G+ + +Y CG
Sbjct: 49 LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
WN MI G+ + A+ Y ++ G D TF ++ C
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKAC 157
>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Glycine max]
Length = 986
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG----- 54
+ P F + L +CA+L++L GRQ+ ++++ YG+ +FV + I++Y G
Sbjct: 609 IKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTA 668
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+W ++ GY + E A+ ++ ++ + DG+TF+ +L CSHS
Sbjct: 669 QIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHS 728
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
G+V + FN M D V P C+ MP + VVW
Sbjct: 729 GMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVA 788
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+S+C++HSNV L + AA
Sbjct: 789 LLSACRLHSNVELGEFAA 806
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 17/130 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +L +CA L++ GRQ+ ++ G +D+FVG+A +++Y CG
Sbjct: 362 PDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKV 421
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN M+ GY++ +E A+SL++ + ++ D VT+ A++T + G
Sbjct: 422 FQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQG 481
Query: 106 YAEVEIFNSM 115
+++F M
Sbjct: 482 CEALDVFRQM 491
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 21/119 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F V +CA LSSL LG + + + G+ +++FV +A +++Y CG
Sbjct: 257 PDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNM 316
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH-DGVTFVAILTPCS 100
V+WN ++ Y A++L+ + + D ++ V IL C+
Sbjct: 317 FDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACA 375
>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
Length = 669
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P TVL SC ++S+L LG++I I + + + + +A +++Y NCG
Sbjct: 178 IEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEAR 237
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I Y + + +AI L++ + G++ D + FVAIL CSH+G
Sbjct: 238 DVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAG 297
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ F SM + + PK C+ MP K + VWG L
Sbjct: 298 LLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGAL 357
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++HSN+ + AA
Sbjct: 358 LGACRIHSNMDIGLLAA 374
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P SCA L LGRQI + + G ++FV + I++Y CG
Sbjct: 8 LLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAY 67
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGV-KHDGVTFVAIL 96
V+WN MI G+A +A+ ++++++A K D T +IL
Sbjct: 68 QMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASIL 121
Score = 35.8 bits (81), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
++WN M+ Y NE +A+ L+ + G++ D VT +L C EV +
Sbjct: 148 ISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSC-------GEVSALSL 200
Query: 115 MEHDHEVKPKCLM 127
+ HEV + M
Sbjct: 201 GKRIHEVIKRRRM 213
>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
Length = 703
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F ++ L++CA L L LGR + V+ +IFV SA +++Y CG
Sbjct: 319 PTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQI 378
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSGL 104
VTWN MI GYA + A+ ++ D+I SG + +T V ++T CS GL
Sbjct: 379 FYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGL 438
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
E+F +M ++P+ C+ MP + + VWG L+
Sbjct: 439 TKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALL 498
Query: 141 SSCQVHSNVRLAKKAA 156
+C++H L + AA
Sbjct: 499 GACKMHGKTELGRIAA 514
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY--CNCG--------------- 54
++CA L LG Q +VK G+ D+ V ++ ++ Y C C
Sbjct: 227 FNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNS 286
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W M+ YA+N E+A + Y SG + + LT C+
Sbjct: 287 VSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCA 332
>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic [Vitis vinifera]
gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ TQ F+ + +C+ L SL G+ + ++K + ++++VG++ I++Y CG
Sbjct: 423 IQQTQSTFSALFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQ 482
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
W +I+G+A + +AISL+ +I G+ +G TFV +L+ CS +G
Sbjct: 483 TSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAG 542
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV ++IF+SME + V P C+ MP + D VVWG L
Sbjct: 543 LVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGAL 602
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C ++ + ++ A
Sbjct: 603 LSACWFWMDLEVGERVA 619
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 22/138 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC---------- 53
++ F++VLS CA+L L G+ I ++K G + VGSA + Y +C
Sbjct: 97 SESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVF 156
Query: 54 -------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V W+ M+ GY ++ A+S++ + + D V + +++ S +G
Sbjct: 157 DVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKM----PRRDVVAWTTLISGFSKNGDGC 212
Query: 107 AE-VEIFNSMEHDHEVKP 123
+ +EIF M E P
Sbjct: 213 GKALEIFRLMMRSGETTP 230
Score = 38.9 bits (89), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC 53
P +F F V+ +C +L L +GR + ++K G D +G A + YC C
Sbjct: 230 PNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCEC 280
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
VTWN MI GY + E+A+ LY + ++ TF A+ CS G ++
Sbjct: 393 VTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQ-----GQ 447
Query: 115 MEHDHEVKPKCLMPYKDDLVVWGDLV 140
+ H H +K P++ ++ V L+
Sbjct: 448 LLHAHLIKT----PFESNVYVGTSLI 469
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 92/196 (46%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + VLS+CA+L +L LG + + ++ + + +G+A I++Y CG
Sbjct: 310 VKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAW 369
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I G A N YV+ + L+ + G+K DG TF+ +L C+H+G
Sbjct: 370 EVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAG 429
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV FNSM + P C+ MP + + +VWG L
Sbjct: 430 LVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGAL 489
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C++H + +LA+ A
Sbjct: 490 LGACRIHRDTQLAELA 505
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F VL +CA+L L LG +I T +VK G+ D+FV ++ + +Y CG
Sbjct: 110 PNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKV 169
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I GY +AI +++ ++ + D T V +L+ C+ G
Sbjct: 170 FDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLG 227
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F VLS+C +L L G I I++ G ++FVG++ +++Y CG
Sbjct: 211 PDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSV 270
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GYA N ++AI L+ + VK D T V +L+ C+ G
Sbjct: 271 FDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLG 328
>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
Length = 614
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P TVL SC ++S+L LG++I I + + + + +A +++Y NCG
Sbjct: 123 IEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEAR 182
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I Y + + +AI L++ + G++ D + FVAIL CSH+G
Sbjct: 183 DVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAG 242
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ F SM + + PK C+ MP K + VWG L
Sbjct: 243 LLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGAL 302
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++HSN+ + AA
Sbjct: 303 LGACRIHSNMDIGLLAA 319
Score = 35.8 bits (81), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++WN M+ Y NE +A+ L+ + G++ D VT +L C
Sbjct: 93 ISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSC 137
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 93/198 (46%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND-IFVGSAPINIYCNCG----- 54
V P F + L +CA+L +L GRQI ++++ + + +FV + I++Y G
Sbjct: 475 VMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAA 534
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+W ++ GY + E+A+ ++ ++ G+ DGVTFV +L CSHS
Sbjct: 535 RVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHS 594
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
G+V + FN M D V P C+ MP K VW
Sbjct: 595 GMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVA 654
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+S+C+V++NV L + AA
Sbjct: 655 LLSACRVYANVELGEYAA 672
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P VL +CA + + G+Q+ ++ G D+FVG+A +++Y CG
Sbjct: 227 IRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEAN 286
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN M+ GY++ + A+ L++ I ++ + VT+ A++ + G
Sbjct: 287 KVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRG 346
Query: 104 LVYAEVEIFNSME 116
L + +++F M
Sbjct: 347 LGFEALDVFRQMR 359
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 21/122 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F VL +C ++ S G + + G+ ++FVG+ +++Y CG
Sbjct: 124 PDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQV 183
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSH 101
V+WN ++ Y + +A+ +++ + G++ D V+ V +L C+
Sbjct: 184 FDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACAS 243
Query: 102 SG 103
G
Sbjct: 244 VG 245
>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 693
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++ F+ VL++CA L++ LGRQ+ + + G+ F S+ I++Y CG
Sbjct: 319 PNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHV 378
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+ +I GYA+N ++A+ + ++ SG K D VTFV +L+ C+H+GLV
Sbjct: 379 VDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLV 438
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+E F S+ H++ CL MP K +W ++
Sbjct: 439 EKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLG 498
Query: 142 SCQVHSNVRLAKKAA 156
C + N+ LA++AA
Sbjct: 499 GCSTYGNIDLAEEAA 513
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAE 66
G++I IV+ G +D + S+ +++Y CG V+W MI Y +
Sbjct: 239 GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFK 298
Query: 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ + SL+ ++I S + + TF +L C+
Sbjct: 299 SSRWREGFSLFSELIGSCERPNEYTFSGVLNACA 332
Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + ++ C++ +L G+++ I G+ I + + + +Y CG
Sbjct: 85 PPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKV 144
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
+WN M++GYAE +E+A +L+ ++ + D ++ A++T
Sbjct: 145 FDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEM----PERDSYSWTAMVT 192
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 91/196 (46%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P + +VLS+CA SL +G I K DI+VG+A I++YC CGV
Sbjct: 306 VKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKAL 365
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+W +I G A N + + A+ + ++ V+ FV IL C+H+G
Sbjct: 366 EVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAG 425
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +E F SME + +KP+ C+ MP D+V+W L
Sbjct: 426 LVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRIL 485
Query: 140 VSSCQVHSNVRLAKKA 155
+S+ QVH N+ LA+ A
Sbjct: 486 LSASQVHGNIPLAEIA 501
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ + +CA++ + G I R++K G+ + ++V +A IN+Y +CG
Sbjct: 76 NNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVF 135
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN ++ GY + + + + +++ + +GVK D VT V ++ C+ G
Sbjct: 136 DEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLG 192
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI Y++ +A+ L+K+++ S VK D +T ++L+ C+H+G
Sbjct: 276 ISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTG 324
>gi|297742226|emb|CBI34375.3| unnamed protein product [Vitis vinifera]
Length = 814
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 83/191 (43%), Gaps = 43/191 (22%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ VL +C L+ L GR I + +K G D FV SA I++YC CG
Sbjct: 522 LSIVLKACGALTDLEYGRNIHSMALKSGMSQDNFVESAVIDVYCKCGTVDEAAKTFMNVS 581
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V WN M+ GYA++ + L+ ++ G++ D +T++ +L C H+GLV
Sbjct: 582 KNNLVAWNAMVMGYAQHGCYHEVFELFNKMLELGIQPDEITYLGVLNSCCHAGLVNEAHT 641
Query: 111 IFNSMEHDHEVKPKCL-------------------------MPYKDDLVVWGDLVSSCQV 145
+SM H V P CL MP D +W L+S C +
Sbjct: 642 YLSSMLELHGVVP-CLEHYACMIDLFGRVGLLEDAKRTIDQMPIMPDAQIWQILLSGCNI 700
Query: 146 HSNVRLAKKAA 156
H NV L + AA
Sbjct: 701 HGNVDLGEVAA 711
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 17/125 (13%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++ VLS+ + L GRQI K GY V +A I +Y CG
Sbjct: 316 NEYMLINVLSAMREPKLLKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIF 375
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V+WN +I GYAEN ++QA+ ++ + ++ + T +IL ++S
Sbjct: 376 DEMLCGDSVSWNSLIAGYAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAANSNFPE 435
Query: 107 AEVEI 111
++I
Sbjct: 436 QAMQI 440
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 95/195 (48%), Gaps = 42/195 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT------- 56
++F ++L++CA L +L G+ + I ++ + ++ V +A I++YC CG
Sbjct: 262 SEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVF 321
Query: 57 ----------WNEMIHGYAENEYVEQAISLYKDIIASGV-KHDGVTFVAILTPCSHSGLV 105
WN +I G A N + +A + + +S + K D V+F+ +LT C H G +
Sbjct: 322 ETCPRRGLSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAI 381
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F M + +E++P C+ MP K D ++WG L+S
Sbjct: 382 NKARDYFELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLS 441
Query: 142 SCQVHSNVRLAKKAA 156
SC+ H NV++A++AA
Sbjct: 442 SCRKHRNVQIARRAA 456
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 25/137 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + +V + A+L G Q+ R+VK G ND F+ + I +Y N G
Sbjct: 123 IQPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEAR 182
Query: 55 ---------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V N MI GYA+ ++++ +L+ D+I V++ ++++
Sbjct: 183 RVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMIT----RTSVSWNSMISGY 238
Query: 100 SHSGLVYAEVEIFNSME 116
+G + +E+FN M+
Sbjct: 239 VRNGKLMEALELFNKMQ 255
>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 643
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F++++ + LS L LG+Q+ +++ + ++IF+ S+ I++YC CG
Sbjct: 267 VRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIAR 326
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GYA + +A L++ + VK + +TF+A+LT CSH+G
Sbjct: 327 RVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAG 386
Query: 104 LVYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDL 139
LV + FNSM + + P M K VW L
Sbjct: 387 LVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTL 446
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH N LA++ A
Sbjct: 447 LRACRVHKNTVLAEEVA 463
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P F +TVL A+ + + G + +K+G+ ND+FVGS+ I++Y NC
Sbjct: 168 PDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKV 227
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V WN M+ GYA+N VE+A+ +++ ++ +GV+ VTF +++
Sbjct: 228 FDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLI 278
>gi|359492768|ref|XP_002279149.2| PREDICTED: pentatricopeptide repeat-containing protein At1g43980,
mitochondrial-like [Vitis vinifera]
Length = 665
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT+F + VLS+ + L + G QI + +VK G +D+ V S+ + +Y G
Sbjct: 367 PTEFTLSIVLSAVSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKT 426
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN MI G A N V +A+ ++K+++ G D +T +L C+ GLV
Sbjct: 427 FAKIGARDLISWNTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLV 486
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVS 141
+ IF+SME ++ V P LMP++ ++WG L+
Sbjct: 487 DEGLSIFSSMEKEYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLLC 546
Query: 142 SCQVHSNVRLAKKAA 156
+C+++ ++R ++ A
Sbjct: 547 ACEIYGDLRFTERVA 561
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P QF +TV++ C+ L L G QI ++ G+ ++ V SA I+++ C
Sbjct: 266 PDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCNRLEDSVRV 325
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V N MI YA + + E A+ L+ + ++ T +L+ S
Sbjct: 326 FEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVS 380
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 21/119 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG-NDIFVGSAPINIYCNCGV---- 55
+ P+ F ++T+LS +SS G+QI ++++G +++ VG++ I +Y GV
Sbjct: 165 IRPSGFTYSTLLSF---VSSACRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVVDYA 221
Query: 56 -------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+WN +I ++ Y A+ + + + G D T ++T CS+
Sbjct: 222 FGVFITMEELDITSWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSN 280
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + L +C K+ +L +G +I + +G+ + +G+A +++Y CG
Sbjct: 301 VRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSAS 360
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TW+ MI G+A + +QA+ + + ++G+ D V F+AILT CSHSG
Sbjct: 361 RVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSG 420
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDL 139
V + F SM D+ ++P MP D V+WG L
Sbjct: 421 NVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGAL 480
Query: 140 VSSCQVHSNVRLAKKAA 156
+C+ H N+ +A+ A
Sbjct: 481 FCACRAHKNIEMAELTA 497
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 27 ILTRIVKDG---YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83
++ V++G ++FV N+ V+W MI+G+++N E+A+S++ ++
Sbjct: 245 LINGFVRNGDLDRARELFVQMPEKNV-----VSWTTMINGFSQNGDHEKALSMFWRMLEE 299
Query: 84 GVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113
GV+ + +T V+ L C+ G + I N
Sbjct: 300 GVRPNDLTVVSALLACTKIGALQVGERIHN 329
>gi|308081250|ref|NP_001182909.1| uncharacterized protein LOC100501193 [Zea mays]
gi|238008118|gb|ACR35094.1| unknown [Zea mays]
Length = 402
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F F +++ CA L G Q+ +++K +D FVGS + +Y NCG
Sbjct: 157 VEPNEFTFASMIKGCAMHDLLEQGAQLHAQVLKTNLISDSFVGSTLVYMYGNCGLISLSL 216
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN +I+ YA++ + AI + + +SG++ + +TFV +LT CSH+G
Sbjct: 217 QLFNEIGYRTEIAWNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITFVCLLTACSHAG 276
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F+SM+ H ++PK C+ MP K W L
Sbjct: 277 LVDEGLGYFHSMKDAHGIEPKAEHYSCIIDMYGRAGRLDEAEKFISEMPVKPSAYAWCSL 336
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++ N L + AA
Sbjct: 337 LGACRMQGNKELGEVAA 353
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V Q F + LS+ L + GR + I+K G+ + V +A +++Y G
Sbjct: 55 VGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKSGDLENAS 114
Query: 55 -------VTWN-----EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
WN +I GY E +E+A+ Y ++ GV+ + TF +++ C+
Sbjct: 115 RVVSIDPGGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPNEFTFASMIKGCAMH 174
Query: 103 GLV 105
L+
Sbjct: 175 DLL 177
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 44/196 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT+ +VL +CA++ L LG+ + I G D +VG+A +++Y CG
Sbjct: 284 VEPTELTLVSVLGACAEIGELELGKGVHGYIGSKGVVADGYVGNALVDMYAKCGSLELAR 343
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN MI G++ + Y +A+ L+ A V+ D VTF+ +L CSH G
Sbjct: 344 QLFESMSTRDITCWNAMIVGFSVHGYSRKALELFD---AMRVEPDHVTFLGVLIACSHGG 400
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
LV F SM D+++ P C+ MP K + V+W +
Sbjct: 401 LVDEGRVYFRSMTEDYKIVPGVKHYGCMVDMLCRCGKVAEAYQMINHMPVKANCVLWKMV 460
Query: 140 VSSCQVHSNVRLAKKA 155
+++C+VH ++ LA KA
Sbjct: 461 LAACRVHGHIDLANKA 476
Score = 37.4 bits (85), Expect = 2.2, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 54 GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I GY + QA+ +++++ SGV+ +T V++L C+ G
Sbjct: 253 AVSWNSLIGGYTKLGRYVQALEVFREMQDSGVEPTELTLVSVLGACAEIG 302
>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
Length = 694
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F ++ L++CA L L LGR + V+ +IFV SA +++Y CG
Sbjct: 319 PTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQI 378
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSGL 104
VTWN MI GYA + A+ ++ D+I SG + +T V ++T CS GL
Sbjct: 379 FYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGL 438
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
E+F +M ++P+ C+ MP + + VWG L+
Sbjct: 439 TKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALL 498
Query: 141 SSCQVHSNVRLAKKAA 156
+C++H L + AA
Sbjct: 499 GACKMHGKTELGRIAA 514
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY--CNCG--------------- 54
++CA L LG Q +VK G+ D+ V ++ ++ Y C C
Sbjct: 227 FNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNS 286
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W M+ YA+N E+A + Y SG + + LT C+
Sbjct: 287 VSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCA 332
>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 741
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q ++ L +C+ L SL +G+++ + + D+ +A + +Y CG
Sbjct: 367 PNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNV 426
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI A + + + L++ ++ SG+K + VTF +L+ CSHS LV
Sbjct: 427 FDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLV 486
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
++IFNSM DH V+P C+ MP + WG L+
Sbjct: 487 EEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLG 546
Query: 142 SCQVHSNVRLAKKAA 156
+C+V+ NV LAK +A
Sbjct: 547 ACRVYKNVELAKISA 561
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 78/171 (45%), Gaps = 26/171 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P +++L +C++L L GR I V+ G ++FV SA +++Y C
Sbjct: 229 VKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQAR 288
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN ++ Y N ++ ++L+ + + GV+ D T+ A++ C +G
Sbjct: 289 LVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENG 348
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
VE+ M++ + +K + + + +C + ++R+ K+
Sbjct: 349 QTEKAVEMLRKMQN---------LGFKPNQITISSFLPACSILESLRMGKE 390
>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Cucumis sativus]
Length = 679
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 92/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + LS+CAK+ +L G +I + +G+ ++ +G+A +++Y CG
Sbjct: 305 PNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKV 364
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ W+ MI G+A + + +A+ ++ + +G K D V F+A+L CSHSG V
Sbjct: 365 FHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQV 424
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVS 141
++ F++M + ++P MP D VVWG L
Sbjct: 425 NEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFC 484
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H NV +A+ A+
Sbjct: 485 ACRTHKNVEMAELAS 499
>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 596
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P + ++VLS+CA + +L GR++ ++K+ + VG+ I+ Y CG
Sbjct: 302 VAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAI 361
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW MI+G+A + Y A+ L+ +++S V + VTF+ +L+ C+H G
Sbjct: 362 LVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGG 421
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +F SM+ ++PK C+ MP + VWG L
Sbjct: 422 LVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGAL 481
Query: 140 VSSCQVHSNVRLAKKAA 156
SC +H + L K AA
Sbjct: 482 FGSCLIHKDYELGKYAA 498
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 18/124 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG----- 54
V + +VL + K + GR I ++ G D+F+GS+ +++Y CG
Sbjct: 200 VAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDA 259
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
VTW +I GY + E+ + ++++++ S V + T ++L+ C+H
Sbjct: 260 QKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHV 319
Query: 103 GLVY 106
G ++
Sbjct: 320 GALH 323
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 58/115 (50%), Gaps = 22/115 (19%)
Query: 1 VYPTQFPFTTVLSSCAKL--SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---- 54
V P++ F +L + KL ++ F Q I+K G+ +D+FV ++ I+ Y NCG
Sbjct: 100 VVPSRHTFPPLLKAVFKLRDANPF---QFHAHILKFGFDSDLFVRNSLISGYSNCGLFEF 156
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V+W MI G+ N+ +A++ + ++ SGV + +T V++L
Sbjct: 157 GSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEMKRSGVAANEMTVVSVL 211
>gi|223947353|gb|ACN27760.1| unknown [Zea mays]
gi|413934876|gb|AFW69427.1| selenium-binding protein [Zea mays]
Length = 504
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 61/201 (30%), Positives = 96/201 (47%), Gaps = 52/201 (25%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGR----QILTRIVKDGYGNDIFVGSAPINIYCNCGV--- 55
P Q F +L++ A+L +L LG+ Q+LTR + +G+A +N+Y CG
Sbjct: 207 PDQTTFVVMLTAAAELGNLALGKWAHGQVLTRRTD----MTLQLGTAVVNMYTKCGEVSY 262
Query: 56 --------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
TW+ MI GY++N V +A+ L+ + + V + VTF+ +L CSH
Sbjct: 263 ASRLFENMAARNVWTWSAMIMGYSQNGMVREALELFDRMKDASVAPNYVTFLGLLCGCSH 322
Query: 102 SGLVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWG 137
+GLV + F+ MEH + +KP MP + D VVW
Sbjct: 323 AGLVNEGRKFFHEMEHVYGIKPMMTHYSAMVDVLGRNGRLQEAFEFVVDMPVEADTVVWR 382
Query: 138 DLVSSCQVHSN---VRLAKKA 155
L+S+CQ+HS+ + +A KA
Sbjct: 383 TLLSACQLHSSKDCIGIADKA 403
>gi|125528323|gb|EAY76437.1| hypothetical protein OsI_04370 [Oryza sativa Indica Group]
Length = 456
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F +L+S A +L +GR I +K D+F G++ ++ Y CG
Sbjct: 169 VRPNESTFPCLLTSVANAGALGVGRSIHASAIKFLGKLDVFAGNSLVSFYARCGSLDDSV 228
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I GYA+N E+A+ ++ + A+G+K D VT + +L C+H+G
Sbjct: 229 LAFKKIKNKNVVSWNALICGYAQNGRGEEALDAFRRMKATGLKPDRVTLLGLLFGCNHAG 288
Query: 104 LVYAEVEIFNS--MEHDHEVKPK---CL-------------------MPYKDDLVVWGDL 139
LV +F + ME ++P+ C+ +P++ +V W L
Sbjct: 289 LVDEGYSLFRTAEMEQPGVLRPEHYACVVDLFSRAKRFDDAKRFLENLPFEPGIVFWKSL 348
Query: 140 VSSCQVHSNVRLAKKAA 156
+ CQ+H N LAK A
Sbjct: 349 IGGCQIHWNRELAKSVA 365
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 48/151 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F F T+L S + L L +G Q+ + K G +++FVGSA ++ Y G
Sbjct: 37 IVPNEFTFGTILQSASALRDLRVGAQLHACVAKLGLCSNVFVGSALVDHYAKMGSVREAQ 96
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
++WN MI G ++ E+
Sbjct: 97 GALQDTREPNVVSYTALIAGFLKNGMSGDAARLFRCMPERNVISWNAMIGGSSKAGLNEE 156
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
A++L+ ++ GV+ + TF +LT +++G
Sbjct: 157 AVNLFLEMCREGVRPNESTFPCLLTSVANAG 187
>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 736
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 93/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q F VL +C ++++L G I + +VK G+ + VG+A +++Y CG
Sbjct: 362 PDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRV 421
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ M+ GY + +AIS+ + A+ V D F +IL+ CSH+GLV
Sbjct: 422 FDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLV 481
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
EIF ME ++ VKP C+ M K +W L++
Sbjct: 482 VEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLT 541
Query: 142 SCQVHSNVRLAKKAA 156
+ ++H N++LA+ +A
Sbjct: 542 ASRLHKNIKLAEISA 556
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG--------------- 54
+LS+CA L ++ G+ I V++ GN + F ++ I +YCNC
Sbjct: 268 LLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWK 327
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN MI GYA N +++ L++ + G D VTF+A+L C
Sbjct: 328 DTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQ 376
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 17/113 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
F + VL +C L + +GR++ + +V G +DI+VG++ + +Y G
Sbjct: 161 NFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFD 220
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+WN MI GYA+N A ++ + +G+ D T + +L+ C+
Sbjct: 221 RMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACA 273
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 23/124 (18%)
Query: 5 QFPFTTV-----LSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCGVT-- 56
Q+P T++ L S S G+Q+ ++ N+ ++ + Y CG+
Sbjct: 54 QYPLTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQ 113
Query: 57 ---------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
WN MI GYA N +++ LY++++ G + D T+ +L C
Sbjct: 114 AEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGD 173
Query: 102 SGLV 105
LV
Sbjct: 174 LLLV 177
>gi|15238469|ref|NP_200768.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170472|sp|Q9FGR2.1|PP436_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g59600
gi|10177776|dbj|BAB11040.1| unnamed protein product [Arabidopsis thaliana]
gi|71143062|gb|AAZ23922.1| At5g59600 [Arabidopsis thaliana]
gi|332009827|gb|AED97210.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 534
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+YP T+L +C L+ + G++I V G + FV SA +++Y CG
Sbjct: 284 LYPNSATIITLLPACTTLAYMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAM 343
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VT+N MI YA + ++A+ L+ + A+G K D +TF AILT CSH+G
Sbjct: 344 ILFRKTPKKTTVTFNSMIFCYANHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHAG 403
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L +F M++ + + P+ C+ M + DL VWG L
Sbjct: 404 LTDLGQNLFLLMQNKYRIVPRLEHYACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGAL 463
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+ H N+ LA+ AA
Sbjct: 464 LAACRNHGNMELARIAA 480
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 26/153 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F ++L + L G+ I ++K Y +D F+ S+ I++Y G
Sbjct: 118 FIVPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFIVSSLIDMYSKFGEVGNARKVFSD 177
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V +N MI GYA N ++A++L KD+ G+K D +T+ A+++ SH
Sbjct: 178 LGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNALISGFSHMRNEEKV 237
Query: 109 VEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
EI M CL YK D+V W ++S
Sbjct: 238 SEILELM---------CLDGYKPDVVSWTSIIS 261
>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
Length = 587
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 89/196 (45%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F ++ L++CA L L LGR + V+ +IFV SA +++Y CG
Sbjct: 212 PTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQI 271
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSGL 104
VTWN MI GYA + A+ ++ D+I SG + +T V ++T CS GL
Sbjct: 272 FYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGL 331
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
E+F +M ++P+ C+ MP + + VWG L+
Sbjct: 332 TKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALL 391
Query: 141 SSCQVHSNVRLAKKAA 156
+C++H L + AA
Sbjct: 392 GACKMHGKTELGRIAA 407
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY--CNCG--------------- 54
++CA L LG Q +VK G+ D+ V ++ ++ Y C C
Sbjct: 120 FNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNS 179
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W M+ YA+N E+A + Y SG + + LT C+
Sbjct: 180 VSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCA 225
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 88/193 (45%), Gaps = 41/193 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + T VLS+CA+ + GR + + K G+ I V +A I+ Y CG
Sbjct: 267 PNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLV 326
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI G A + Y E+AI L+ ++ S +K D +TF++IL CSH+GLV
Sbjct: 327 FDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLV 386
Query: 106 YAEVEIFNSMEHDHEVKP------------------------KCLMPYKDDLVVWGDLVS 141
F+ M + + ++P C MP + +VW L+
Sbjct: 387 DLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLG 446
Query: 142 SCQVHSNVRLAKK 154
+C +H N+ LA +
Sbjct: 447 ACSIHGNLYLAGQ 459
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W+ MI G+A N A + ++++ G++ + V+ +L+ C+ +G
Sbjct: 235 VSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAG 283
>gi|222616932|gb|EEE53064.1| hypothetical protein OsJ_35805 [Oryza sativa Japonica Group]
Length = 841
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ LS+ A L++L +GRQ + +V+ G+ +D G+A I+ Y CG
Sbjct: 453 YACCLSASANLATLQIGRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEARQVFDEMV 512
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN +I GYA N + I++++++ A+ V+ D +T V +L+ CSH+GL+ +
Sbjct: 513 VQDIVSWNALIDGYASNGNGSEVIAVFREMEANSVRPDEITLVVVLSACSHAGLIDEGLH 572
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
FNSM + +KP C+ M + + VWG L+ +C+VH
Sbjct: 573 FFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGMQIQPNAGVWGALLGACRVH 632
Query: 147 SNVRLAKKAA 156
N +A AA
Sbjct: 633 KNHEIAWLAA 642
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F VL +CA L+ L G + +++ G+ +D+ VG+ + +Y CG
Sbjct: 386 PNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKV 445
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+ + MI GYA N ++++ L++ + +G+K D VTFV +L+ C H+GLV
Sbjct: 446 FDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLV 505
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F+ M + + P C+ MP K D +WG L+S
Sbjct: 506 DEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLS 565
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H+N+ L +K A
Sbjct: 566 ACRTHNNIDLGEKVA 580
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 37/171 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F F ++L +C L L + IVK G+ +++FVG+ +++Y G
Sbjct: 162 IQPNHFTFASILPACTDLEVL---GEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFAR 218
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY +N +E A+ L+++I K D +T+ ++ + G
Sbjct: 219 ELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEI----PKRDVITWNTMMAGYAQCG 274
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
V VE+F M + +LV W +++ + +V+ A K
Sbjct: 275 DVENAVELFEKMP-------------EQNLVSWNTMIAGYVQNGSVKEAFK 312
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG-NDIFVGSAPINIYCNCG----- 54
++P + ++L C SL + + +++ + DI +G+ ++IY G
Sbjct: 60 IWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEA 119
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W MI YA +E+ ++A+ + ++ G++ + TF +IL C+
Sbjct: 120 RRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACT 177
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 51 CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
CN V+WN MI GY++N E A+ L+ + +K + TF +L C A +
Sbjct: 351 CNV-VSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPAC-------AALA 402
Query: 111 IFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
+ HEV + ++ D++V LV
Sbjct: 403 VLEQGNEAHEVVIRS--GFQSDVLVGNTLVG 431
Score = 37.0 bits (84), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
++WN +I G+A+N VE+A+ L+K + V V++ A++ S +G +++F
Sbjct: 323 ISWNAVISGFAQNGQVEEALKLFKTMPECNV----VSWNAMIAGYSQNGQAENALKLFGQ 378
Query: 115 ME 116
M+
Sbjct: 379 MQ 380
>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 610
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 41/187 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F + V+ A L++ LGRQ+ ++ G+ +++ VG+A I++Y C
Sbjct: 239 FVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEG 298
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
++W M+ G A++ E+A++LY ++ +G K + VTFV ++ CSH+GLV
Sbjct: 299 ITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKG 358
Query: 109 VEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVSSCQ 144
++F SM++++ + P+ MPY+ D WG L+S+C
Sbjct: 359 RQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACT 418
Query: 145 VHSNVRL 151
+ + +
Sbjct: 419 KYKDAEM 425
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P F ++V S A+L S LGRQ+ V Y D V S+ +++YC CG
Sbjct: 101 LHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGR 160
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W ++ GYA N E+A+ L++ + + + A+++ ++G
Sbjct: 161 KVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNL----FAWTALISGLVNTG 216
Query: 104 LVYAEVEIFNSMEHD 118
VE+F M D
Sbjct: 217 ESVGAVELFVEMRRD 231
>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 1441
Score = 89.4 bits (220), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 96/198 (48%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q F +VL +CA +SSL G++I + I G+ D S+ I++Y CG
Sbjct: 710 ILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAKCGDVKGSL 769
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++WN MI G A+N Y E+A+ ++K + + D VTF+ +L+ CSH+
Sbjct: 770 QVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVTFLGVLSACSHA 829
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CLMPY-------------------KDDLVVWGD 138
G V ++F+ M +++++ P+ C++ K D ++W
Sbjct: 830 GRVSEGRKVFDLMVNNYKLLPRVDHLGCMVDILGRWGFLNEAEEFINKLGCKADPMLWST 889
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C+ H + K+AA
Sbjct: 890 LLGACRKHGDEVRGKRAA 907
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 67/116 (57%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F FT++ S+CA L L G Q+ T ++K+ + +++FV +A +++Y G
Sbjct: 408 PDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALKEARKQ 467
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I GY + EY ++A +++ ++++GV D V+ +I++ C++
Sbjct: 468 FELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACAN 523
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
T+ +VLS+ A LS L G + + K+G ++++VGSA +N+Y C
Sbjct: 308 TRSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVF 367
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN M+ G+A+N ++ + + + G + D TF +I + C+
Sbjct: 368 NSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACA 421
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 17/114 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P +F F VLS+C+ L + GRQ+ + K G+G F I++Y C
Sbjct: 138 VRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDAR 197
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+W +I GY + + +A+ ++ + G D +T V ++
Sbjct: 198 LVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVN 251
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +++S+CA + L G+Q +VK G GS+ I++Y CG
Sbjct: 507 VLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGVVLAAR 566
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+ N +I GY ++E+AI L+++I G+K VTF +L C
Sbjct: 567 DVFYSMPSRNVVSVNALIAGYTMG-HLEEAIHLFQEIQMVGLKPTEVTFAGLLDGC 621
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 19/117 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY----------------GNDIFVGSAP 46
PT+ F +L C L LGRQI +++K G+ + FV S
Sbjct: 609 PTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRFVDSET 668
Query: 47 INI---YCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ Y V W +I GYA+ + E+A+ Y+ + + + D F ++L C+
Sbjct: 669 LFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACA 725
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 23/120 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P Q TV+++ L L R++ T+I V WN MI
Sbjct: 241 PDQITLVTVVNAYVALGRLADARKLFTQIPNPNV------------------VAWNVMIS 282
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122
G+A+ + E+AIS + ++ +G+K + ++L+ + ++ + SM H K
Sbjct: 283 GHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLN-----YGSMVHAQATK 337
>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 1024
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTR-IVKDGYGNDIFVGSAPINIYCNCG----- 54
V P + +VLS+C +L+ L LG I +V + + +A +++Y CG
Sbjct: 486 VVPIEHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAA 545
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++WN MI GYA N +QAI+++ + G + + +TFV++LT CSH
Sbjct: 546 TEVFSTMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHG 605
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GL+ E F++ME + +KP+ C+ MP + WG
Sbjct: 606 GLISEGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGA 665
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+++C++H NV LA+ +A
Sbjct: 666 LLNACRMHGNVELARLSA 683
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F L +C + ++F G + + K G+ ++ V + I+ Y G
Sbjct: 260 FVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQVFDESS 319
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW MI GYA ++ E+A+ +++ ++ S V+ + VT +A+++ CS G
Sbjct: 320 DKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMG 372
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 21/102 (20%)
Query: 17 KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNE 59
K L R++ R+ D++ ++ +N Y CG V W+
Sbjct: 405 KCDCLVDARELFDRMAT----KDVYSWTSMVNGYAKCGDLESARRFFDQTPRKNAVCWSA 460
Query: 60 MIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
MI GY++N ++++ L+ +++ GV T V++L+ C
Sbjct: 461 MIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQ 502
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 90/195 (46%), Gaps = 41/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + LS+C++L +L G+ I + K D + I++Y CG
Sbjct: 239 VPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEAL 298
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
W +I GYA + +AIS + ++ GVK + +TF A+LT CS++G
Sbjct: 299 GVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTG 358
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +FN++E D+ +KP C+ MP K + V+WG L
Sbjct: 359 LVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSL 418
Query: 140 VSSCQVHSNVRLAKK 154
+ +CQ+H N+ L +K
Sbjct: 419 LKACQIHKNIELGEK 433
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 22/129 (17%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
FPF +L +C+ LS+ QI I K GYG+DI+ ++ IN Y G
Sbjct: 113 FPF--LLKACSNLSAFQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDR 170
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN +I GY + ++ A++L++ + K++ +++ +++ +G+
Sbjct: 171 IQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPE---KNNAISWTTMISGYVQAGMNKEA 227
Query: 109 VEIFNSMEH 117
+++F+ M++
Sbjct: 228 LQLFHEMQN 236
>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q + ++L + A + +L G +I R++K D+FV + I++Y CG
Sbjct: 516 IIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAM 575
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN +I + + + E+ + L+ +++ GVK D VTFV++L+ CSHSG
Sbjct: 576 SLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSG 635
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
V F M+ ++ +KP C+ MP + D +WG L
Sbjct: 636 FVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGAL 694
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N+ L K A+
Sbjct: 695 LGACRIHGNIELGKFAS 711
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---- 56
+ P + F VL +C L GR+I K G+ ++FV ++ I++Y G T
Sbjct: 214 IRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIAR 270
Query: 57 -------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN MI G +N QA+ + ++ G+K + VT V+IL C G
Sbjct: 271 SLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLG 330
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 18/87 (20%)
Query: 31 IVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQA 73
+V G IF+ + +N+Y N G TWN MI Y N + +A
Sbjct: 142 LVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEA 201
Query: 74 IS-LYKDIIASGVKHDGVTFVAILTPC 99
I Y+ ++ S ++ D TF +L C
Sbjct: 202 IGCFYQLLLVSEIRPDFYTFPPVLKAC 228
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++L C +L + I ++K G D+FV +A IN+Y G
Sbjct: 321 SILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFIT 380
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN +I Y +N+ A + + +G + D +T V++ + + S
Sbjct: 381 DVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQS 430
Score = 36.2 bits (82), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 21/107 (19%)
Query: 25 RQILTRIVKDGY-GNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAE 66
R + I++ G+ D+ +G+A +++Y G ++WN +I GYA+
Sbjct: 437 RSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQ 496
Query: 67 NEYVEQAISLYK--DIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
N +AI +YK + + + G T+V+IL +H G + + I
Sbjct: 497 NGLASEAIEVYKMMEECKEIIPNQG-TWVSILPAYAHVGALQQGMRI 542
>gi|357118743|ref|XP_003561109.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Brachypodium distachyon]
Length = 535
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 60/215 (27%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + ++VL +CA + ++ LG ++ G+ ++FV +A + +Y CG
Sbjct: 218 VQPNELTVSSVLPACAAVGAMELGTKVEEYARGKGHLGNVFVTNALLEMYAKCGSIQRAW 277
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIA------------------SG 84
+WN MI +A + +A++L+ + +G
Sbjct: 278 QVFQGIGHRRDLCSWNTMIMAFAVHGLWMEALALFHKLRVRISCSNSLVYFFSIPTHMTG 337
Query: 85 VKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK-----CL------------- 126
VK DG+TFV ++ C+H GLV IFNSME D + P+ C+
Sbjct: 338 VKPDGITFVGVILACTHGGLVDEGKLIFNSMEADFSINPRIEHYGCMVDLLGRAGLLKEA 397
Query: 127 ------MPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155
MP + D V+WG L+ +C H N+ LA+ A
Sbjct: 398 YSMIISMPAEPDAVIWGALLGACSFHGNIELAETA 432
>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 41/187 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F + V+ A L++ LGRQ+ ++ G+ +++ VG+A I++Y C
Sbjct: 321 FVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEG 380
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
++W M+ G A++ E+A++LY ++ +G K + VTFV ++ CSH+GLV
Sbjct: 381 ITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKG 440
Query: 109 VEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLVSSCQ 144
++F SM++++ + P+ MPY+ D WG L+S+C
Sbjct: 441 RQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACT 500
Query: 145 VHSNVRL 151
+ + +
Sbjct: 501 KYKDAEM 507
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P F ++V S A+L S LGRQ+ V Y D V S+ +++YC CG
Sbjct: 183 LHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGR 242
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W ++ GYA N E+A+ L++ + + + A+++ ++G
Sbjct: 243 KVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNL----FAWTALISGLVNTG 298
Query: 104 LVYAEVEIFNSMEHD 118
VE+F M D
Sbjct: 299 ESVGAVELFVEMRRD 313
>gi|125544034|gb|EAY90173.1| hypothetical protein OsI_11738 [Oryza sativa Indica Group]
Length = 408
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 96/202 (47%), Gaps = 48/202 (23%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F +VL +C+ LSS +G Q+ +++K +DI GSA +++Y CG
Sbjct: 71 PTVSTFVSVLGACSLLSSPEIGEQVHCQVIKSSLSSDIKAGSALLDMYSKCGRVDDGRRI 130
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIA-------SGVKHDGVTFVAILTP 98
+TW MI GY +N ++A+ L++ ++ ++ + TF++ L+
Sbjct: 131 FDRMAERNVITWTSMIDGYGKNGLSDEALQLFEQMLRRRRRRHDDAIRPNHATFLSALSA 190
Query: 99 CSHSGLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLV 134
C+ +GL+ E+F SME +H ++P+ C+ +P + +
Sbjct: 191 CARAGLLSRGQEVFQSMEREHALRPRMEHYACMVDLLGRFGSVRRAHDFIRGIPARPNSD 250
Query: 135 VWGDLVSSCQVHSNVRLAKKAA 156
VW L+ + +H +V +A AA
Sbjct: 251 VWAALLGAATLHGDVDMANVAA 272
>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + L +C K+ +L +G +I + +G+ + +G+A +++Y CG
Sbjct: 214 VRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSAS 273
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TW+ MI G+A + +QA+ + + ++G+ D V F+AILT CSHSG
Sbjct: 274 RVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSG 333
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDL 139
V + F SM D+ ++P MP D V+WG L
Sbjct: 334 NVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGAL 393
Query: 140 VSSCQVHSNVRLAKKAA 156
+C+ H N+ +A+ A
Sbjct: 394 FCACRAHKNIEMAELTA 410
>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q + +++ + + + +L G +I +++K+ D+FV + I++Y CG
Sbjct: 424 PNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSL 483
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN +I + E+A+ L+KD++A VK D +TFV++L+ CSHSGLV
Sbjct: 484 FYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLV 543
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F+ M+ ++ +KP C+ MP + D +WG L+S
Sbjct: 544 DEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLS 603
Query: 142 SCQVHSNVRLAKKAA 156
+C+++ N L A+
Sbjct: 604 ACKIYGNAELGTLAS 618
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 20/117 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P + F +L +C SL G+++ + K G+ +D+FV ++ +++Y GV
Sbjct: 122 PDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKV 178
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+WN MI G+ +N A+ + + GVK D +T +IL C+ S
Sbjct: 179 FVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQS 235
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
++L CA+ + G I ++K G +D+FV +A IN+Y G
Sbjct: 226 ASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEV 285
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95
V+WN +I Y +N A+ +K + G++ D +T V++
Sbjct: 286 RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCG----- 54
+ P ++ S ++LS + R IL +++ + D+ +G+A +N+Y G
Sbjct: 319 IRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCA 378
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYK--DIIASGVKHDGVTFVAILTPCS 100
++WN ++ GY +N +AI Y + + + G T+V+I+ S
Sbjct: 379 HTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQG-TWVSIIPAYS 437
Query: 101 HSGLVYAEVEI 111
H G + ++I
Sbjct: 438 HVGALQQGMKI 448
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 41/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P LS+CA+L +L G+ I + + K D +G I++Y CG
Sbjct: 272 VEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEAL 331
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
W +I GYA + + +AIS + ++ G+K + +TF +LT CS++G
Sbjct: 332 EVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTG 391
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV IF +ME D+ +KP C+ MP K + V+WG L
Sbjct: 392 LVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGAL 451
Query: 140 VSSCQVHSNVRLAKK 154
+ +C++H N+ L ++
Sbjct: 452 LKACRIHKNIELGEE 466
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 72/135 (53%), Gaps = 22/135 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F ++L +C+ LS+L QI +I K GY ND++ ++ IN Y G
Sbjct: 145 YTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDR 204
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN +I GYA+ ++ A++L++ + V+ + +++ +++ +G+
Sbjct: 205 IPKPDAVSWNSVIKGYAKAGKMDIALTLFRKM----VEKNAISWTTMISGYVQAGMHKEA 260
Query: 109 VEIFNSMEHDHEVKP 123
+++F+ M+ + +V+P
Sbjct: 261 LQLFHEMQ-NSDVEP 274
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 28/149 (18%)
Query: 6 FPFTTVLSSC-AKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCGVTWNEMIHG 63
+ T LS C + SS FL +IV DG+ D F+ WN MI G
Sbjct: 76 YAITKFLSCCISSTSSDFLP---YAQIVFDGFDRPDTFL--------------WNLMIRG 118
Query: 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP 123
++ ++ E+++ LY+ ++ H+ TF ++L CS+ + +I +
Sbjct: 119 FSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITK------ 172
Query: 124 KCLMPYKDDLVVWGDLVSSCQVHSNVRLA 152
+ Y++D+ L++S N +LA
Sbjct: 173 ---LGYENDVYAVNSLINSYAATGNFKLA 198
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F ++LS+CA+L +L LGR+ +VK G ++ G+A +++Y CG
Sbjct: 92 VEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAH 151
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G A N + ++A+ L+K++ G+ +TFV +L CSH G
Sbjct: 152 KVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCG 211
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V + F M+ ++ + PK C+ MP + + VVW L
Sbjct: 212 MVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTL 271
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C +H ++ L + A
Sbjct: 272 LGACTIHGHLALGEVA 287
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 59/107 (55%), Gaps = 17/107 (15%)
Query: 16 AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWN 58
AKL + G ++ + +++G+ + +FV + +++Y CG VTWN
Sbjct: 6 AKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWN 65
Query: 59 EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+I+GYA N +A++L++++ GV+ DG T V++L+ C+ G +
Sbjct: 66 SVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGAL 112
>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q + +++ + + + +L G +I +++K+ D+FV + I++Y CG
Sbjct: 424 PNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSL 483
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN +I + E+A+ L+KD++A VK D +TFV++L+ CSHSGLV
Sbjct: 484 FYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLV 543
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F+ M+ ++ +KP C+ MP + D +WG L+S
Sbjct: 544 DEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLS 603
Query: 142 SCQVHSNVRLAKKAA 156
+C+++ N L A+
Sbjct: 604 ACKIYGNAELGTLAS 618
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 20/117 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P + F +L +C SL G+++ + K G+ +D+FV ++ +++Y GV
Sbjct: 122 PDFYTFPPILKACV---SLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKV 178
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+WN MI G+ +N A+ + + GVK D +T +IL C+ S
Sbjct: 179 FVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQS 235
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
++L CA+ + G I ++K G +D+FV +A IN+Y G
Sbjct: 226 ASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEV 285
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95
V+WN +I Y +N A+ +K + G++ D +T V++
Sbjct: 286 RDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSL 329
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCG----- 54
+ P ++ S ++LS + R IL +++ + D+ +G+A +N+Y G
Sbjct: 319 IRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCA 378
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYK--DIIASGVKHDGVTFVAILTPCS 100
++WN ++ GY +N +AI Y + + + G T+V+I+ S
Sbjct: 379 HTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQG-TWVSIIPAYS 437
Query: 101 HSGLVYAEVEI 111
H G + ++I
Sbjct: 438 HVGALQQGMKI 448
>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
Length = 756
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ LS+ A L++L +GRQ + +V+ G+ +D G+A I+ Y CG
Sbjct: 453 YACCLSASANLATLQIGRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEARQVFDEMV 512
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN +I GYA N + I++++++ A+ V+ D +T V +L+ CSH+GL+ +
Sbjct: 513 VQDIVSWNALIDGYASNGNGSEVIAVFREMEANSVRPDEITLVVVLSACSHAGLIDEGLH 572
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
FNSM + +KP C+ M + + VWG L+ +C+VH
Sbjct: 573 FFNSMIKLYSLKPVAEHYTCMVDLLGRAGRLREAFELVQGMQIQPNAGVWGALLGACRVH 632
Query: 147 SNVRLAKKAA 156
N +A AA
Sbjct: 633 KNHEIAWLAA 642
>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
[Vitis vinifera]
Length = 1580
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F T++ + + +++L GRQ+ ++K +D FVG++ +++Y CG
Sbjct: 1204 VMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAY 1263
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN M+ G A++ E+A++L+K + + G++ D V+F+ IL+ CSH+G
Sbjct: 1264 RLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAG 1323
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L E +SM +D+ ++P+ CL MP+K + L
Sbjct: 1324 LTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRAL 1383
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++ +V K+ A
Sbjct: 1384 LGACRIQGDVETGKRVA 1400
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 17/107 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
VL++ A L LG+Q+ VK G +D+ V ++ +N+Y G
Sbjct: 910 VLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLD 969
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN MI A++ E++++L+ D++ G+K D T ++L CS
Sbjct: 970 LISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACS 1016
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q T +C L L G+QI +K G+ +D+ V S +++Y CG
Sbjct: 1107 QITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFN 1166
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W MI G +N +QA+ +Y + S V D TF ++ S
Sbjct: 1167 YISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASS 1219
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 18/115 (15%)
Query: 3 PTQFPFTTVLSSCAKL-SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
P F +VL +C+ L L + RQI +K G D FV + I++Y G
Sbjct: 1003 PDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEF 1062
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
WN M+ GY ++A+ L+ I SG K D +T C
Sbjct: 1063 LFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKAC 1117
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
T+ VL C L+ + +K G D+FV A +NIY CG
Sbjct: 726 TRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLF 785
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN M+ GY + ++A L+ + SG++ D + IL S
Sbjct: 786 DWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVS 839
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 22/119 (18%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+L + +L LG+ RIV G D F+ + + +Y CG
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686
Query: 55 -VTWNEMIHGYA-----ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
VTWN ++ YA + ++ + L++ + AS +T +L C +SG ++A
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWA 745
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +L +C +++L G+ ++ G D++VGSA I++Y CG
Sbjct: 382 VKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASR 441
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I GYA + ++A+ ++ + SG K D ++F +L+ CS SG
Sbjct: 442 ICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSG 501
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L FNSM + ++ + C+ MP D VWG L
Sbjct: 502 LTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGAL 561
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC+VH+NV L + AA
Sbjct: 562 LSSCRVHNNVSLGEVAA 578
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 21/147 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTW----- 57
P ++VL + L L +G I ++K G +D V SA I++Y C T
Sbjct: 248 PDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQV 307
Query: 58 ------------NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
N I G + N VE ++ L++ + G++ + V++ +++ CS +G
Sbjct: 308 FDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRD 367
Query: 106 YAEVEIFNSME----HDHEVKPKCLMP 128
+E+F M+ + V CL+P
Sbjct: 368 MEALELFREMQIAGVKPNSVTIPCLLP 394
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 26/171 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + + +CA LS+L RQ+ G+ +D FV S+ +++Y C
Sbjct: 110 LMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAH 169
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W+ ++ YA V++A L+ ++ SGV+ + +++ ++ +HSG
Sbjct: 170 RVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSG 229
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCLMPYKDDLVVWGDLVSSCQVHSNV 149
L V +F M H +P ++P DL DLV +H V
Sbjct: 230 LYSEAVLMFLDM-HLRGFEPDGTTISSVLPAVGDL---EDLVMGILIHGYV 276
>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q + ++L + A + +L G +I R++K D+FV + I++Y CG
Sbjct: 516 IIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAM 575
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN +I + + + E+ + L+ +++ GVK D VTFV++L+ CSHSG
Sbjct: 576 SLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSG 635
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
V F M+ ++ +KP C+ MP + D +WG L
Sbjct: 636 FVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGAL 694
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N+ L K A+
Sbjct: 695 LGACRIHGNIELGKFAS 711
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---- 56
+ P + F VL +C L GR+I K G+ ++FV ++ I++Y G T
Sbjct: 214 IRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIAR 270
Query: 57 -------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN MI G +N QA+ + ++ G+K + VT V+IL C G
Sbjct: 271 SLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLG 330
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++L C +L + I ++K G D+FV +A IN+Y G
Sbjct: 321 SILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFIT 380
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN +I Y +N+ A + + +G + D +T V++ + + S
Sbjct: 381 DVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQS 430
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 21/107 (19%)
Query: 25 RQILTRIVKDGY-GNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAE 66
R + I++ G+ D+ +G+A +++Y G ++WN +I GYA+
Sbjct: 437 RSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQ 496
Query: 67 NEYVEQAISLYK--DIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
N +AI +YK + + + G T+V+IL +H G + ++I
Sbjct: 497 NGLASEAIEVYKMMEECKEIIPNQG-TWVSILPAYAHVGALQQGMKI 542
Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 18/87 (20%)
Query: 31 IVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQA 73
+V G IF+ + +N+Y N G WN MI Y N + +A
Sbjct: 142 LVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEA 201
Query: 74 IS-LYKDIIASGVKHDGVTFVAILTPC 99
I Y+ ++ S ++ D TF +L C
Sbjct: 202 IGCFYQLLLVSEIRPDFYTFPPVLKAC 228
>gi|357152605|ref|XP_003576175.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Brachypodium distachyon]
Length = 500
Score = 89.4 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 42/189 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKD-GYGNDIFVGSAPINIYCNCG-------------- 54
+VL++C K L GR+I R+V+ + +D+ +G+A I++Y CG
Sbjct: 211 SVLNACGKEGELMKGREIHGRMVRCLAFDSDVPIGNALIDMYAKCGHVDASRAVFAGMLE 270
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+W+ +I Y + ++A+ +YK++++ VK +G+TF+++L+ CSHSGLV I
Sbjct: 271 RNVVSWSTLISCYGVHGKGKEALRIYKEMLSQRVKPNGITFMSVLSSCSHSGLVTDGRMI 330
Query: 112 FNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVSSCQVHS 147
F SM H V+P MP WG ++S+C H+
Sbjct: 331 FESMSKVHGVEPTAEHYASMVDILGRAGAIEEAVGLIRKMPMGPCASAWGAVLSACATHN 390
Query: 148 NVRLAKKAA 156
NV + + AA
Sbjct: 391 NVDVGEIAA 399
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 41/192 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T +LS+CA+L +L LG+ + + + + I+V +A I +Y CG
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN MI GY + ++A++++ +++ SG+ VTF+ +L CSH+GLV
Sbjct: 478 FDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLV 537
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
EIFNSM H + +P C+ M + VW L+
Sbjct: 538 KEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLG 597
Query: 142 SCQVHSNVRLAK 153
+C++H + LA+
Sbjct: 598 ACRIHKDTNLAR 609
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 19/115 (16%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG--------------- 54
+L + A+L L LG QI + K G Y +D +V + I++Y CG
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHD-YVLTGFISLYSKCGKIKMGSALFREFRKP 285
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V +N MIHGY N E ++SL+K+++ SG + T V+++ H L+YA
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYA 340
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI GY +N E AISL++++ S + VT IL+ C+ G
Sbjct: 387 SWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLG 434
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P + +S+ + GR I + V DG +++ +GS + +Y
Sbjct: 117 PNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKV 176
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDII-ASGVKHDGVTFVAIL 96
+ WN MI GY +NE ++I +++D+I S + D T + IL
Sbjct: 177 FDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDIL 228
>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Cucumis sativus]
Length = 797
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F +++C+ L +L GRQ+ +IV G+ + + VG+A I +Y CG
Sbjct: 423 PNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTM 482
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI ++ + +AI LY+ ++ G+ D TF+ +L+ CSH+GLV
Sbjct: 483 FLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLV 542
Query: 106 YAEVEIFNSMEHDHEVKPK-----------CL-------------MPYKDDLVVWGDLVS 141
FNSM ++ + P C MP++ +W L++
Sbjct: 543 EEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLA 602
Query: 142 SCQVHSNVRLAKKAA 156
C+ H N+ L +AA
Sbjct: 603 GCRTHGNMDLGIEAA 617
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 25/132 (18%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGND----IFVGSAPINIYCNCG--------- 54
+T+V+S+CA LG+Q+ I+K+ D + VG+ I +Y G
Sbjct: 292 YTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIF 351
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
+TWN ++ GY +E+A S + + + +T+ +++ + +G
Sbjct: 352 YEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNL----LTWTVMISGLAQNGFGE 407
Query: 107 AEVEIFNSMEHD 118
+++FN M+ D
Sbjct: 408 QALKLFNQMKLD 419
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 18/101 (17%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHG 63
+F +TT+++ + L R+IL + + G+ WN MI G
Sbjct: 222 NEFIWTTLITGYVRNGDLTGAREILDTMTE------------------QPGIAWNAMISG 263
Query: 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
Y + E A++L++ + GV+ D T+ ++++ C+ G
Sbjct: 264 YLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGF 304
>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 95/197 (48%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q + ++L + A + +L G +I R++K D+FV + I++Y CG
Sbjct: 283 IIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAM 342
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN +I + + + E+ + L+ +++ GVK D VTFV++L+ CSHSG
Sbjct: 343 SLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSG 402
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
V F M+ ++ +KP C+ MP + D +WG L
Sbjct: 403 FVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGAL 461
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N+ L K A+
Sbjct: 462 LGACRIHGNIELGKFAS 478
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 29/158 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---- 56
+ P + F VL +C L GR+I K G+ ++FV ++ I++Y G T
Sbjct: 114 IRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIAR 170
Query: 57 -------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN MI G +N QA+ + ++ G+K + VT V+IL
Sbjct: 171 SLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVD-- 228
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
+YA++ + +S E+ P D++ W L++
Sbjct: 229 -MYAKLGLLDSAHKVFEIIP------VKDVISWNTLIT 259
Score = 36.2 bits (82), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 18/87 (20%)
Query: 31 IVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQA 73
+V G IF+ + +N+Y N G WN MI Y N + +A
Sbjct: 42 LVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEA 101
Query: 74 IS-LYKDIIASGVKHDGVTFVAILTPC 99
I Y+ ++ S ++ D TF +L C
Sbjct: 102 IGCFYQLLLVSEIRPDFYTFPPVLKAC 128
>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 43/199 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V + F ++VLS+CA ++ L LGR I VK +IFVGSA +++Y CG
Sbjct: 306 VETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSE 365
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGV--KHDGVTFVAILTPCSH 101
VT N +I GYA V+ A++L++D+ G + +TFV++L+ CS
Sbjct: 366 QAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSR 425
Query: 102 SGLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWG 137
+G V ++IF+SM+ + ++P C+ MP K + VWG
Sbjct: 426 AGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWG 485
Query: 138 DLVSSCQVHSNVRLAKKAA 156
L ++C++H L AA
Sbjct: 486 ALQNACRMHGKPHLGILAA 504
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 17/122 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P F F V + A L G+QI VK G D+FVG + ++YC +
Sbjct: 104 VAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDAR 163
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN I + ++AI + + G + + +TF L CS
Sbjct: 164 KLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGL 223
Query: 104 LV 105
L+
Sbjct: 224 LL 225
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 41/188 (21%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+V+S+CA L +L GR + + + G ++ + +A I++Y CG
Sbjct: 335 SVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCR 394
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIF 112
V+W MI A + + E A+ L+ + GVK + TF A+ T C HSGLV + F
Sbjct: 395 SVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHF 454
Query: 113 NSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVHSN 148
SM D+ + P C+ MP + D+ VWG L+ SC++HSN
Sbjct: 455 ESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSN 514
Query: 149 VRLAKKAA 156
+ LA+ A
Sbjct: 515 LELAELVA 522
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 65/117 (55%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P + F V+ SCA LS+L G+++ IVK G+ +D+FV S+ + +Y G
Sbjct: 124 LFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGME 183
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W +I GY +N Y ++ + ++++++ SG + + VT V++L C+
Sbjct: 184 LVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACA 240
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +VL +CA L L LG+ I +K G D+ + +A I +Y CG
Sbjct: 227 PNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSL 286
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI Y +N A+ L++ + A V D +T V++++ C+ G
Sbjct: 287 FDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLG 344
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 21/111 (18%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT----------- 56
F +L+ C+ L L +I +V +G G ++ + + I C T
Sbjct: 32 FNYLLNCCSSLPDL---SRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQM 88
Query: 57 -------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
WN +I GYA+ E+A++LY ++ +G+ D TF ++ C+
Sbjct: 89 PKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCA 139
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 90/197 (45%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +L +C +++L G+ ++ G D++VGSA I++Y CG
Sbjct: 382 VKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASR 441
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I GYA + ++A+ ++ + SG K D ++F +L+ CS SG
Sbjct: 442 ICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSG 501
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L FNSM + ++ + C+ MP D VWG L
Sbjct: 502 LTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGAL 561
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC+VH+NV L + AA
Sbjct: 562 LSSCRVHNNVSLGEVAA 578
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 21/147 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT------ 56
P ++VL + L L +G I ++K G +D V SA I++Y C T
Sbjct: 248 PDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQV 307
Query: 57 -----------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
N I G + N VE ++ L++ + G++ + V++ +++ CS +G
Sbjct: 308 FDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRD 367
Query: 106 YAEVEIFNSME----HDHEVKPKCLMP 128
+E+F M+ + V CL+P
Sbjct: 368 IEALELFREMQIAGVKPNSVTIPCLLP 394
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + + +CA LS+L RQ+ G+ +D FV S+ +++Y C
Sbjct: 110 LMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAH 169
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W+ ++ YA V++A L+ ++ SGV+ + +++ ++ +HSG
Sbjct: 170 RVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSG 229
Query: 104 LVYAEVEIFNSM 115
L V +F M
Sbjct: 230 LYSEAVLMFLDM 241
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V T+ +++ L +CA L++L G QI + VK + DI V +A I++Y CG
Sbjct: 235 VQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDAR 294
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY+ + +A+ ++ + + VK D +TFV +L+ C+++G
Sbjct: 295 LVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAG 354
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L+ F SM DH ++P C+ +P++ ++VW L
Sbjct: 355 LLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRAL 414
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C +H+++ L + +A
Sbjct: 415 LGACVIHNDIELGRISA 431
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P QF F +VL +CA + L LG QI ++K G +D+FV +A +++Y CG
Sbjct: 134 VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSM 193
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTWN +I G+ + E+A+ L+ +++ V+ VT+ + L C+
Sbjct: 194 ELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACA 250
>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
Length = 847
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F F++++ CA + L G Q+ +++K D FVGS +++Y CG
Sbjct: 471 VEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSM 530
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN +I+ +A++ + +AI + +I SG++ + + FV++LT CSH+G
Sbjct: 531 QLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAG 590
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV ++ F SM+ H ++PK C+ MP K + W L
Sbjct: 591 LVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSL 650
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++ + L + AA
Sbjct: 651 LGACRMRGSKELGEVAA 667
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT-------- 56
Q F +VLS+ L +L + I + K G+ ++ V +A I++Y
Sbjct: 373 QHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLK 432
Query: 57 -----WN-----EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
WN MI GY E + VE+A+ +Y ++ GV+ + TF +++ C+ L+
Sbjct: 433 IDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALL 491
Score = 38.5 bits (88), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 18/81 (22%)
Query: 35 GYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQAISLY 77
G+ ++FV S ++Y CG V W MI GYA+N +E A+ +
Sbjct: 301 GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSF 360
Query: 78 KDIIASG-VKHDGVTFVAILT 97
+D+ G V D F ++L+
Sbjct: 361 RDMKREGLVGADQHVFCSVLS 381
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 42/193 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
PT T+VLS+CA L +L LGR I + K G + + V +A I++Y CG
Sbjct: 223 PTSVTVTSVLSACALLGALELGRWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDV 282
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
W+ MI YA + Y +AISL++++ G++ D VTF+ +L CSHSG+V
Sbjct: 283 FQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYACSHSGMV 342
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
++ F+SM ++ + P C+ +P + ++W L+S
Sbjct: 343 SEGLQYFDSM-REYGIVPGIKHYGCVTDLLARSGQLEKAYKFIDELPIQPTAILWRTLLS 401
Query: 142 SCQVHSNVRLAKK 154
+C H V L K+
Sbjct: 402 ACGSHGAVDLGKR 414
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F ++L +CA + GRQ VK G + +V IN+Y CG
Sbjct: 119 VAPDTYTFVSLLKACAAARAGEEGRQAHGVAVKTGAADHEYVLPTLINMYAECGDARSAR 178
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V++N MI + +A+ L++++ A G+K VT ++L+ C+
Sbjct: 179 AMFGRVPNGDCVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKPTSVTVTSVLSACALL 238
Query: 103 G 103
G
Sbjct: 239 G 239
>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 975
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P + L +C+++S+L LG+++ VK FV + I++Y CG
Sbjct: 599 IWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQ 658
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN +I GY + + +AI L+K + +G + D VTF+A+LT C+H+G
Sbjct: 659 NIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAG 718
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +E M+ +KPK C+ +P K D +W L
Sbjct: 719 LVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSL 778
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC+ + ++ + +K A
Sbjct: 779 LSSCRNYRDLDIGEKVA 795
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F ++LS+CA+L SL G++I ++++G+ D F+ + +++Y CG
Sbjct: 500 PDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLF 559
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN MI+G+++NE+ A+ ++ +++S + D ++ + L CS
Sbjct: 560 FDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQ 615
Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 19/122 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F V+ +C + + LG + +K +D+FVG+A I +Y G
Sbjct: 194 PDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKV 253
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIA--SGVKHDGVTFVAILTPCSHSG 103
V+WN +++ EN E++ L+K ++ G+ D T V ++ C+ G
Sbjct: 254 FDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQG 313
Query: 104 LV 105
V
Sbjct: 314 EV 315
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P TV+ CA+ + LG +K G ++ V S+ +++Y CG
Sbjct: 295 LMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEAR 354
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDI-IASGVKHDGVTFVAILTPC 99
++WN MI GY+++ A L + + + VK + VT + +L C
Sbjct: 355 VLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVC 410
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
+WN +I G+ +N + +A+ LY + SG++ D T ++L+ C+ + EI SM
Sbjct: 469 SWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSM 528
>gi|224118652|ref|XP_002331415.1| predicted protein [Populus trichocarpa]
gi|222873629|gb|EEF10760.1| predicted protein [Populus trichocarpa]
Length = 458
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P T+LS+CA L SL +G++I I+ +G+ +D V ++ I+++ CG
Sbjct: 81 IKPNGATLATILSACADLGSLDMGKEIEEYILSNGFQSDRQVQTSLIHMFSKCGSIGKAI 140
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPCSHS 102
W+ MI+GYA + E+A+ L+ ++ +K D V F +IL CSH
Sbjct: 141 SVFERISDKDLAAWSSMINGYAIHGMAEEALGLFHKMLEIKEIKPDAVVFTSILLACSHV 200
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV ++ F SM+ D + P CL MP K VW
Sbjct: 201 GLVEDGLKFFKSMQKDFGIVPSVEHYMCLVDLLGRAGQFELALKTIRVMPVKLQAQVWAP 260
Query: 139 LVSSCQVHSNVRLAKKAA 156
+S+C H N+ L + AA
Sbjct: 261 FLSACTKHCNLELGELAA 278
>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 672
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 96/190 (50%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
+ VL +CA +L +G+ I ++VK +++ VG++ +++YC CG
Sbjct: 303 LSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLK 362
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+W M+ GY + + ++A+ ++ ++I G+K + +TFV++L CSH+GL+
Sbjct: 363 RKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWH 422
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
FN M+ + +V+P C+ M K D +VWG L+ +C++H
Sbjct: 423 WFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIH 482
Query: 147 SNVRLAKKAA 156
NV L + +A
Sbjct: 483 KNVELGEISA 492
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 17/98 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P + F + SC+ L L G+QI + GYG+DIFV SA I++Y CG
Sbjct: 82 LHPNRSTFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDAR 141
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDII 81
V+W MI GY +NE +A+ L+K+ +
Sbjct: 142 KLFDEIPERNVVSWTSMISGYVQNERAREAVFLFKEFL 179
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 27/163 (16%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
V+S+CA++ + + VK G+ + VG+ ++ Y CG
Sbjct: 204 VISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETD 263
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSGLVYAEVEIF 112
+WN +I YA+N +A SL+ D++ G V+++ VT A+L C+HSG + I
Sbjct: 264 VCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCI- 322
Query: 113 NSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155
HD VK M +D+LVV +V V +A+KA
Sbjct: 323 ----HDQVVK----MELEDNLVVGTSIVDMYCKCGRVEMARKA 357
>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
Length = 503
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F T++ + + +++L GRQ+ ++K +D FVG++ +++Y CG
Sbjct: 127 VMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAY 186
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN M+ G A++ E+A++L+K + + G++ D V+F+ IL+ CSH+G
Sbjct: 187 RLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAG 246
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L E +SM +D+ ++P+ CL MP+K + L
Sbjct: 247 LTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRAL 306
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++ +V K+ A
Sbjct: 307 LGACRIQGDVEXGKRVA 323
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q T +C L L G+QI +K G+ +D+ V S +++Y CG
Sbjct: 30 QITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFN 89
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W MI G +N +QA+ +Y + S V D TF ++ S
Sbjct: 90 YISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASS 142
>gi|224141025|ref|XP_002323875.1| predicted protein [Populus trichocarpa]
gi|222866877|gb|EEF04008.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +V+S+C L L +G + + I ++G+ + + +A I++Y CG
Sbjct: 231 VRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAW 290
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI A N E A L+ + GV DGVTF+A+LT +H G
Sbjct: 291 QVFNSMSRKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYAHVG 350
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +F SM+ DH ++ + C+ MP + VVWG L
Sbjct: 351 LVDEGYRLFESMQRDHGIEARIEHYGCVVNMLGQAGWLEEAFELITSMPLPSNDVVWGVL 410
Query: 140 VSSCQVHSNVRLAKK 154
+++C+ H +V + ++
Sbjct: 411 LAACRKHGDVYMGER 425
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W M+ Y++ +Y +A+ LY ++ GV+ D VT V++++ C++ G
Sbjct: 201 VSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISACTNLG 249
>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 698
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F F++++ CA + L G Q+ +++K D FVGS +++Y CG
Sbjct: 322 VEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSM 381
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN +I+ +A++ + +AI + +I SG++ + + FV++LT CSH+G
Sbjct: 382 QLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAG 441
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV ++ F SM+ H ++PK C+ MP K + W L
Sbjct: 442 LVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSL 501
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++ + L + AA
Sbjct: 502 LGACRMRGSKELGEVAA 518
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT-------- 56
Q F +VLS+ L +L + I + K G+ ++ V +A I++Y
Sbjct: 224 QHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLK 283
Query: 57 -----WN-----EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
WN MI GY E + VE+A+ +Y ++ GV+ + TF +++ C+ L+
Sbjct: 284 IDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALL 342
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT+F ++ + A L + G Q+ V+ G+ ++FV S ++Y CG
Sbjct: 118 VAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEAC 177
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILT 97
V W MI GYA+N +E A+ ++D+ G V D F ++L+
Sbjct: 178 RVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLS 232
>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 579
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F +V +CA L+SL G + ++K G+ +D+ V +A I ++ CG
Sbjct: 280 PDDLTFVSVFIACASLASLEEGSKAHALLIKHGFDSDLSVCNALITVHSKCGGIVDSELV 339
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I +A++ ++A S + ++ V+ DG+TF+++L+ C +G V
Sbjct: 340 FGQISHPDLVSWNTIIAAFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKV 399
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ +F+ M ++ + P+ CL MP+K D +WG +++
Sbjct: 400 NESMNLFSLMVDNYGIPPRSEHYACLVDVMSRAGQLQRACKIINEMPFKADSSIWGAVLA 459
Query: 142 SCQVHSNVRLAKKAA 156
+C VH NV L + AA
Sbjct: 460 ACSVHLNVELGELAA 474
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 35/52 (67%)
Query: 49 IYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
I C V+WN ++ GYA+N E+A++L+ +I +G++ D +TFV++ C+
Sbjct: 242 IRCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACA 293
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 41/189 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P L++C L +L G + ++ + N++ V ++ I++YC CG
Sbjct: 191 VKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAR 250
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G+A N +++ ++ + G K D VTF LT CSH G
Sbjct: 251 EVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVG 310
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F +M+ DH + P+ CL MP K + VV G L
Sbjct: 311 LVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQSMPMKPNEVVIGSL 370
Query: 140 VSSCQVHSN 148
+++C+ H N
Sbjct: 371 LAACRTHGN 379
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI+G+ + + E+A++ ++++ SGVK D V +A L C++ G
Sbjct: 161 ISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALNACTNLG 209
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 41/189 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P L++C L +L G + ++ + N+I V ++ I++YC CG
Sbjct: 196 VKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKNNIRVSNSLIDLYCRCGCVEFAR 255
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G+A N +++ ++ + G K D VTF LT CSH G
Sbjct: 256 EVFDKMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVG 315
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F +M+ DH + P+ CL MP K + VV G L
Sbjct: 316 LVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPMKPNEVVIGSL 375
Query: 140 VSSCQVHSN 148
+++C+ H N
Sbjct: 376 LAACRNHGN 384
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI+G+ + + E+A++ ++++ SGVK D V +A L C+H G
Sbjct: 166 ISWTAMINGFVKKGFHEEALAWFREMQISGVKPDYVAIIAALAACTHLG 214
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T+L SCA LS+L G++I +K+ D+ VGSA +++Y CG
Sbjct: 428 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKV 487
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TWN +I Y + ++AI L + ++ GVK + VTF+++ CSHSG+V
Sbjct: 488 FDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMV 547
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYK-DDLVVWGDLV 140
+ IF M+ D+ V+P +MP + W L+
Sbjct: 548 DEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLL 607
Query: 141 SSCQVHSNVRLAKKAA 156
+ ++H+N+ + + AA
Sbjct: 608 GASRIHNNLEIGEIAA 623
Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 19/122 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCGVT--- 56
V P +F ++VL +C+ L L G+++ +K+G + FVGSA +++YCNC
Sbjct: 211 VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 270
Query: 57 --------------WNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSH 101
WN MI GY++NE+ ++A+ L+ + S G+ + T ++ C
Sbjct: 271 RRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVR 330
Query: 102 SG 103
SG
Sbjct: 331 SG 332
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND-IFVGSAPINIYCNCG----- 54
+ P + F +L + A L + LG+QI + K GYG D + V + +N+Y CG
Sbjct: 6 IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 65
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I E E A+ ++ ++ V+ T V+++T CS+
Sbjct: 66 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 124
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 21/131 (16%)
Query: 1 VYPTQFPFTTVLSSCAKL---SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--- 54
V P+ F +V+++C+ L L +G+Q+ ++ G N F+ + + +Y G
Sbjct: 108 VEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLA 166
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTWN ++ +NE + +A+ ++++ GV+ D T ++L CS
Sbjct: 167 SSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACS 226
Query: 101 HSGLVYAEVEI 111
H ++ E+
Sbjct: 227 HLEMLRTGKEL 237
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T+L SCA LS+L G++I +K+ D+ VGSA +++Y CG
Sbjct: 515 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKV 574
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TWN +I Y + ++AI L + ++ GVK + VTF+++ CSHSG+V
Sbjct: 575 FDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMV 634
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYK-DDLVVWGDLV 140
+ IF M+ D+ V+P +MP + W L+
Sbjct: 635 DEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLL 694
Query: 141 SSCQVHSNVRLAKKAA 156
+ ++H+N+ + + AA
Sbjct: 695 GASRIHNNLEIGEIAA 710
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 19/122 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCGVT--- 56
V P +F ++VL +C+ L L G+++ +K+G + FVGSA +++YCNC
Sbjct: 298 VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 357
Query: 57 --------------WNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSH 101
WN MI GY++NE+ ++A+ L+ + S G+ + T ++ C
Sbjct: 358 RRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVR 417
Query: 102 SG 103
SG
Sbjct: 418 SG 419
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND-IFVGSAPINIYCNCG----- 54
+ P + F +L + A L + LG+QI + K GYG D + V + +N+Y CG
Sbjct: 93 IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 152
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I E E A+ ++ ++ V+ T V+++T CS+
Sbjct: 153 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 211
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 21/131 (16%)
Query: 1 VYPTQFPFTTVLSSCAKL---SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--- 54
V P+ F +V+++C+ L L +G+Q+ ++ G N F+ + + +Y G
Sbjct: 195 VEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLA 253
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTWN ++ +NE + +A+ ++++ GV+ D T ++L CS
Sbjct: 254 SSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACS 313
Query: 101 HSGLVYAEVEI 111
H ++ E+
Sbjct: 314 HLEMLRTGKEL 324
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T+L SCA LS+L G++I +K+ D+ VGSA +++Y CG
Sbjct: 515 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKV 574
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TWN +I Y + ++AI L + ++ GVK + VTF+++ CSHSG+V
Sbjct: 575 FDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMV 634
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYK-DDLVVWGDLV 140
+ IF M+ D+ V+P +MP + W L+
Sbjct: 635 DEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLL 694
Query: 141 SSCQVHSNVRLAKKAA 156
+ ++H+N+ + + AA
Sbjct: 695 GASRIHNNLEIGEIAA 710
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 19/122 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCGVT--- 56
V P +F ++VL +C+ L L G+++ +K+G + FVGSA +++YCNC
Sbjct: 298 VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 357
Query: 57 --------------WNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSH 101
WN MI GY++NE+ ++A+ L+ + S G+ + T ++ C
Sbjct: 358 RRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVR 417
Query: 102 SG 103
SG
Sbjct: 418 SG 419
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND-IFVGSAPINIYCNCG----- 54
+ P + F +L + A L + LG+QI + K GYG D + V + +N+Y CG
Sbjct: 93 IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 152
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I E E A+ ++ ++ V+ T V+++T CS+
Sbjct: 153 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 211
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 21/131 (16%)
Query: 1 VYPTQFPFTTVLSSCAKL---SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--- 54
V P+ F +V+++C+ L L +G+Q+ ++ G N F+ + + +Y G
Sbjct: 195 VEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLA 253
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTWN ++ +NE + +A+ ++++ GV+ D T ++L CS
Sbjct: 254 SSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACS 313
Query: 101 HSGLVYAEVEI 111
H ++ E+
Sbjct: 314 HLEMLRTGKEL 324
>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
Length = 967
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F++++ + LS L LG+Q+ +++ + ++IF+ S+ I++YC CG
Sbjct: 584 VRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIAR 643
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GYA + +A L++ + VK + +TF+A+LT CSH+G
Sbjct: 644 RVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAG 703
Query: 104 LVYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDL 139
LV + FNSM + + P M K VW L
Sbjct: 704 LVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTL 763
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH N LA++ A
Sbjct: 764 LRACRVHKNTVLAEEVA 780
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P F +TVL A+ + + G + +K+G+ ND+FVGS+ I++Y NC
Sbjct: 485 PDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKV 544
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V WN M+ GYA+N VE+A+ +++ ++ +GV+ VTF +++
Sbjct: 545 FDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLI 595
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 91/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P VL++CA+ +L G+ + + G ++F G+A +++Y CG
Sbjct: 205 VRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAM 264
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ W MI G A + +A+ L+ + +SG++ D + F+ +L C+H+G
Sbjct: 265 DVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAG 324
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV E+F+SM + +KPK C+ MP + D ++WG L
Sbjct: 325 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGAL 384
Query: 140 VSSCQVHSNVRLAKKAA 156
++ C+ H NV A+ A
Sbjct: 385 MAGCRFHKNVEFAEYVA 401
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F +VLS+CA L + LG + V +G ++ +G++ IN+Y CG
Sbjct: 208 VEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAR 267
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W MI GY N Y QA+ L+ ++ +G+ + +TFVA+L+ C+H+G
Sbjct: 268 EVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAG 327
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL--MPYKDDLV-----------------VWGDL 139
LV +F SM ++ + P+ CL M + L+ +W +
Sbjct: 328 LVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAM 387
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++H N L + A
Sbjct: 388 LGACKMHKNFGLGAQVA 404
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 69/120 (57%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P+ + FT+V+ SCA L +L GR I ++ +G+G+D++V +A ++ Y CGV
Sbjct: 107 VAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNAR 166
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN MI GY +N + ++AI L+ + GV+ + TFV++L+ C+H G
Sbjct: 167 KVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLG 226
>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
Length = 613
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++VL C+ LS+L G+QI +K ++ VG++ +++YC CG
Sbjct: 237 VQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSAC 296
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ ++AI+L++ + GV+ + +TFV +LT C H+G
Sbjct: 297 ILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTG 356
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L ++ F M+ + ++P+ C+ MP++ +G L
Sbjct: 357 LCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTL 416
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+V+ N+ A+ AA
Sbjct: 417 LAACRVYKNLEFAELAA 433
>gi|15229605|ref|NP_190543.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183390|sp|Q9M2Y4.1|PP276_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49740
gi|6723419|emb|CAB66912.1| putative protein [Arabidopsis thaliana]
gi|332645063|gb|AEE78584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 737
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 44/200 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + +T+LS C SSL LG Q +++ G + +G+A IN+Y CG
Sbjct: 485 ILPDAYTLSTLLSICVSTSSLMLGSQTHAYVLRHGQFKETLIGNALINMYSQCGTIQNSL 544
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHS 102
V+WN +I Y+ + E A++ YK + G V D TF A+L+ CSH+
Sbjct: 545 EVFNQMSEKDVVSWNSLISAYSRHGEGENAVNTYKTMQDEGKVIPDAATFSAVLSACSHA 604
Query: 103 GLVYAEVEIFNSMEHDHEV---------------------KPKCLMPYKDDLV-----VW 136
GLV +EIFNSM H V + + L+ + + VW
Sbjct: 605 GLVEEGLEIFNSMVEFHGVIRNVDHFSCLVDLLGRAGHLDEAESLVKISEKTIGSRVDVW 664
Query: 137 GDLVSSCQVHSNVRLAKKAA 156
L S+C H +++L K A
Sbjct: 665 WALFSACAAHGDLKLGKMVA 684
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 20/113 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT F +V+ SC S +G Q+ +K GY V +A + +Y +
Sbjct: 287 LRPTDLTFVSVMGSC---SCAAMGHQVHGLAIKTGYEKYTLVSNATMTMYSSFEDFGAAH 343
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
VTWN MI Y + + + A+S+YK + GVK D TF ++L
Sbjct: 344 KVFESLEEKDLVTWNTMISSYNQAKLGKSAMSVYKRMHIIGVKPDEFTFGSLL 396
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 17/106 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + +TT+LS+ KL + ++ ++ + +D+ + WN MI
Sbjct: 121 PDVYSWTTLLSASFKLGDIEYAFEVFDKMPER---DDVAI--------------WNAMIT 163
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
G E+ Y E ++ L++++ GV+HD F IL+ C + L + +
Sbjct: 164 GCKESGYHETSVELFREMHKLGVRHDKFGFATILSMCDYGSLDFGK 209
Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V +F F T+LS C SL G+Q+ + ++K G+ V +A I +Y NC
Sbjct: 186 VRHDKFGFATILSMC-DYGSLDFGKQVHSLVIKAGFFIASSVVNALITMYFNCQVVVDAC 244
Query: 54 ------------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VT+N +I G A + ++++ +++ ++ + ++ +TFV+++ CS
Sbjct: 245 LVFEETDVAVRDQVTFNVVIDGLAGFKR-DESLLVFRKMLEASLRPTDLTFVSVMGSCSC 303
Query: 102 SGLVY-------------------AEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVS 141
+ + + A + +++S E D K ++ DLV W ++S
Sbjct: 304 AAMGHQVHGLAIKTGYEKYTLVSNATMTMYSSFE-DFGAAHKVFESLEEKDLVTWNTMIS 362
Query: 142 SCQVHSNVRLAKKA 155
S ++ +L K A
Sbjct: 363 S---YNQAKLGKSA 373
>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Glycine max]
Length = 693
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 92/184 (50%), Gaps = 42/184 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P + ++++SSCAKL+SL+ G+ + ++V G N + V SA +++YC CGV
Sbjct: 318 VKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDAR 377
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN MI GYA+N V +A++LY+ + K D +TFV +L+ C ++
Sbjct: 378 VIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINAD 437
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+V + F+S+ +H + P C+ MP++ + +W L
Sbjct: 438 MVKEGQKYFDSIS-EHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTL 496
Query: 140 VSSC 143
+S C
Sbjct: 497 LSVC 500
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 17/136 (12%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PTQ+ L +C++L L G+QI RIV G + FV +A ++Y CG
Sbjct: 153 PTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLL 212
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI GY + + I L+ ++ SG+K D VT +L G V
Sbjct: 213 FDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRV 272
Query: 106 YAEVEIFNSMEHDHEV 121
+F + E+
Sbjct: 273 DDARNLFIKLPKKDEI 288
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 17/89 (19%)
Query: 35 GYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQAISLY 77
G D+ S +N Y CG + W MI GYA+N E A L+
Sbjct: 251 GLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLF 310
Query: 78 KDIIASGVKHDGVTFVAILTPCSHSGLVY 106
D++ VK D T ++++ C+ +Y
Sbjct: 311 GDMLRRNVKPDSYTISSMVSSCAKLASLY 339
>gi|357472867|ref|XP_003606718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507773|gb|AES88915.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 93/196 (47%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT + +L +CA + + G++I + G +D++V SA +++Y CG
Sbjct: 301 PTSATISALLPACATEARVRFGKEIHGYALVIGVEDDLYVRSALVDMYAKCGFISEARTL 360
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGV-KHDGVTFVAILTPCSHSGL 104
VT N MI GYA + E+AI L+ + GV K D +TF A LT CSH G
Sbjct: 361 FYKMPEKNTVTMNSMIFGYANHGCCEEAIELFNQMEMEGVPKLDHLTFTAALTACSHVGD 420
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
+ +F M+ + ++P+ C+ MP K DL VWG L+
Sbjct: 421 IELGQRLFKIMQEKYCIEPRLEHYACMVDLFGRAGKLEEAYGIIKSMPVKPDLFVWGALL 480
Query: 141 SSCQVHSNVRLAKKAA 156
++C+ H +V LA+ AA
Sbjct: 481 AACRNHGHVELAEVAA 496
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 26/153 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F +VL +C + G Q+ ++K + D FV SA I +Y CG
Sbjct: 133 FVIPSVLKACGHVGDRIYGEQVHCLVLKCSFEIDAFVSSALIVMYSKCGEVRDARKVFDG 192
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V N ++ GYA+ +A+SL +++ GV + VT+ A+++ +
Sbjct: 193 MVVKDLVAMNAVVSGYAQQGLPNEALSLVENMKLMGVNPNVVTWNALISGFAQKCDREMV 252
Query: 109 VEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
EIF M D V+P D+V W ++S
Sbjct: 253 SEIFRLMNED-RVEP--------DVVSWTSVLS 276
>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
Length = 865
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 98/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F T++ + + +++L GRQ+ ++K +D FVG++ +++Y CG
Sbjct: 489 VMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAY 548
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN M+ G A++ E+A++L+K + + G++ D V+F+ IL+ CSH+G
Sbjct: 549 RLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAG 608
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L E +SM +D+ ++P+ CL MP+K + L
Sbjct: 609 LTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRAL 668
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++ +V K+ A
Sbjct: 669 LGACRIQGDVETGKRVA 685
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 19/114 (16%)
Query: 1 VYPTQFPFTTVLSSC--AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---- 54
+ P +F +L+ C A L LG+Q+ VK G +D+ V ++ +N+Y G
Sbjct: 280 LRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYF 339
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95
++WN MI A++ E++++L+ D++ G+K D T +I
Sbjct: 340 AREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASI 393
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 64/194 (32%), Gaps = 67/194 (34%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
T+ VL C L+ + +K G D+FV A +NIY CG
Sbjct: 182 TRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLF 241
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC------- 99
V WN M+ GY + ++A L+ + SG++ D + IL C
Sbjct: 242 DWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDD 301
Query: 100 ------------------------------SHSGLVYAEVEIFNSMEHDHEVKPKCLMPY 129
S G Y E+FN M+H
Sbjct: 302 LELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKH------------ 349
Query: 130 KDDLVVWGDLVSSC 143
DL+ W ++SSC
Sbjct: 350 -LDLISWNSMISSC 362
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
T +C L L G+QI +K G+ +D+ V S +++Y CG
Sbjct: 395 LATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYIS 454
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W MI G +N +QA+ +Y + S V D TF ++ S
Sbjct: 455 APDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASS 504
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 22/119 (18%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+L + +L LG+ RIV G D F+ + + +Y CG
Sbjct: 83 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142
Query: 55 -VTWNEMIHGYA-----ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
VTWN ++ YA + ++ + L++ + AS +T +L C +SG ++A
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWA 201
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 43/195 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q +LS+CA + +L LG+Q+ + G+ +D++VG+A +++Y CG
Sbjct: 327 PDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRV 386
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASG--VKHDGVTFVAILTPCSHSG 103
V+WN MI A + ++A++L+K ++ G V + +TFV +L+ C H+G
Sbjct: 387 FYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAG 446
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +F+ M + PK C+ MP K D V+ G L
Sbjct: 447 LVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGAL 506
Query: 140 VSSCQVHSNVRLAKK 154
+ +CQ N+ ++++
Sbjct: 507 LGACQKRKNIDISER 521
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 19/131 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +VL +C +L L LG + +V++ + F+GSA I++Y CG
Sbjct: 226 PNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRI 285
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL- 104
VTWN MI GYA+N E+AI L++D+ S D +T + IL+ C+ G
Sbjct: 286 FDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGAL 345
Query: 105 -VYAEVEIFNS 114
+ +VEI+ S
Sbjct: 346 DLGKQVEIYAS 356
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + +C+ L ++ GR +++ G D V + I +Y CG
Sbjct: 125 PNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKV 184
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY++ + +A+ L+++++ +G + + ++ V++L C G
Sbjct: 185 FDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELG 242
>gi|358346115|ref|XP_003637117.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
gi|355503052|gb|AES84255.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
Length = 592
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 43/191 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +++LS L L+LG+QI + K D+ + ++ I +Y CG
Sbjct: 403 PDRHTLSSILSVSTGLVDLYLGKQIHQFVTKTVV-PDLPINNSLITMYSRCGEIGDARHV 461
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+TWN MI GYA + + QA+ L++ + ++ +TF+++L C+H+GL
Sbjct: 462 FNEMKLYKDVITWNAMIGGYAFHGFAAQALELFERMKGLKIQPTYITFISVLNACAHAGL 521
Query: 105 VYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDLV 140
V FNSM +D+ ++P+ MP K D VWG L+
Sbjct: 522 VEEGKRQFNSMINDYGIEPRVEHFASLVDILGRQGQLQEAMDLIVNMPVKPDKAVWGALL 581
Query: 141 SSCQVHSNVRL 151
+C+VHSNV L
Sbjct: 582 GACRVHSNVDL 592
>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
Length = 816
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 96/192 (50%), Gaps = 41/192 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q + ++L++ ++L +L G + +++K+ DIFV + +++Y CG
Sbjct: 442 PNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSL 501
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I + + Y +A+ L+K++ + GVK D +TFV++L+ CSHSGLV
Sbjct: 502 FYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLV 561
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F M+ + ++P C+ MP + D+ VWG L+
Sbjct: 562 DEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLG 621
Query: 142 SCQVHSNVRLAK 153
+C++H NV L +
Sbjct: 622 ACRIHENVELVR 633
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV--------- 55
+ F V+ +C L GR++ ++K G+ D+++ ++ I+ Y G
Sbjct: 142 HYTFPPVIRACGNLDD---GRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFD 198
Query: 56 --------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
TWN MI G+ N V +A+ ++ ++ V D VT ++L C
Sbjct: 199 NMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPIC 250
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 19/122 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKD-GYGNDIFVGSAPINIYCNCG----- 54
V P ++ S A+L + R I + + + +DI +G+A I++Y G
Sbjct: 337 VVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSA 396
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDI-IASGVKHDGVTFVAILTPCSH 101
++WN +I GY++N +AI +Y + SG + T+V+ILT S
Sbjct: 397 RKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQ 456
Query: 102 SG 103
G
Sbjct: 457 LG 458
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
+++L C +L + G I +K G D+FV +A IN+Y G
Sbjct: 244 SSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKV 303
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN ++ + +N+ A+ +Y + + GV D +T V++ + + G
Sbjct: 304 RDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELG 355
>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 721
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 96/196 (48%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCG------- 54
P F V S+C+ LSS G+QI +K N I V +A I++Y G
Sbjct: 343 PDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARR 402
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V++N MI GYA++ + +A+ LY+ ++ SG+ + +TFVAIL+ C+H G
Sbjct: 403 VFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGK 462
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V + FN+M+ +++P+ C+ MPYK V W L+
Sbjct: 463 VDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALL 522
Query: 141 SSCQVHSNVRLAKKAA 156
+C+ H N+ LA++AA
Sbjct: 523 GACRKHKNMALAERAA 538
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 21/117 (17%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F +VL++ L L GRQ +++K G+ + VGS I+ Y CG
Sbjct: 241 FTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKV 300
Query: 55 ---------VTWNEMIHGYAEN-EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V WN MI GY+ N E+ E+A+ ++ + G + D +FV + + CS+
Sbjct: 301 FQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSN 357
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 31/115 (26%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI---LTPCSH---------- 101
V+WN MI Y +++ +A++LYK++I G K D T ++ LT H
Sbjct: 206 VSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGK 265
Query: 102 -------------SGLV--YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
SGL+ Y++ + M +V + L P DLV+W ++S
Sbjct: 266 LIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSP---DLVLWNTMIS 317
>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g02750-like [Cucumis sativus]
Length = 741
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q L + A L++L +G Q+ +K G+GND+FV +A + +Y G
Sbjct: 452 PDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENV 511
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I GYA N ++A+ L++ + G+ D VTF +L+ C+H G V
Sbjct: 512 FAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFV 571
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ +F SM + +KP+ C+ M +WG L+
Sbjct: 572 DQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLW 631
Query: 142 SCQVHSNVRLAKKAA 156
+C++H N+ LAK +A
Sbjct: 632 ACRIHHNLELAKYSA 646
Score = 39.7 bits (91), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 16/100 (16%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+WN MI GY NE VE A L+ + K D ++ ++T + G + E+FN
Sbjct: 78 VSWNSMIAGYLHNELVEDAARLFDRMF----KRDIYSWTLMITCYTRIGELEKARELFN- 132
Query: 115 MEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
L+P K D V L++ R AKK
Sbjct: 133 -----------LLPDKQDTVCRNALIAGYAKKRLFREAKK 161
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+T +++ ++ L R+IL + Y N I +A IN Y G
Sbjct: 298 WTAMINGYVRVGKLLQAREILNLM---PYKN-IAAQTAMINGYLQSGRMDEANEIFSQIS 353
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V WN MI GYA ++A+ L+++++ D V++ ++ + +G + +E
Sbjct: 354 VRDSVCWNSMITGYAHCGRTDEALRLFQEMVCK----DMVSWNTMIAAYAQAGQMDKALE 409
Query: 111 IFNSMEHDHEVKPKCLM 127
+FN M+ + V L+
Sbjct: 410 MFNEMQERNVVSWNSLI 426
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 42/194 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + T VLS+C++ S G+ + + K GY + V +A I++Y CG
Sbjct: 267 PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLV 326
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+W MI G A + E+A+ L+ ++ A GV DG++F+++L CSH+GL
Sbjct: 327 FEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGL 386
Query: 105 VYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLV 140
+ + F+ M+ + ++P+ C MP +VW L+
Sbjct: 387 IEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLL 446
Query: 141 SSCQVHSNVRLAKK 154
+C H N+ LA++
Sbjct: 447 GACSSHGNIELAEQ 460
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEM 60
V+P F F V+ + SL G Q+ + +K G + +FVG+ I +Y CG
Sbjct: 102 VFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGC----- 156
Query: 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
VE A ++ ++ + V + A++T C V EIF+ M
Sbjct: 157 ---------VEFARKVFDEMHQPNL----VAWNAVITACFRGNDVAGAREIFDKM 198
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 42/194 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + T VLS+C++ S G+ + + K GY + V +A I++Y CG
Sbjct: 259 PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLV 318
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+W MI G A + E+A+ L+ ++ A GV DG++F+++L CSH+GL
Sbjct: 319 FEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGL 378
Query: 105 VYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLV 140
+ + F+ M+ + ++P+ C MP +VW L+
Sbjct: 379 IEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLL 438
Query: 141 SSCQVHSNVRLAKK 154
+C H N+ LA++
Sbjct: 439 GACSSHGNIELAEQ 452
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEM 60
V+P F F V+ + SL G Q+ + +K G + +FVG+ I +Y CG
Sbjct: 94 VFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGC----- 148
Query: 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
VE A ++ ++ + V + A++T C V EIF+ M
Sbjct: 149 ---------VEFARKVFDEMHQPNL----VAWNAVITACFRGNDVAGAREIFDKM 190
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 43/195 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q +LS+CA + +L LG+Q+ + G+ +D++VG+A +++Y CG
Sbjct: 327 PDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRV 386
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASG--VKHDGVTFVAILTPCSHSG 103
V+WN MI A + ++A++L+K ++ G V + +TFV +L+ C H+G
Sbjct: 387 FYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAG 446
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +F+ M + PK C+ MP K D V+ G L
Sbjct: 447 LVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGAL 506
Query: 140 VSSCQVHSNVRLAKK 154
+ +CQ N+ ++++
Sbjct: 507 LGACQKRKNIDISER 521
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 19/131 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + +VL +C +L L LG + +V++ + F+GSA I++Y CG
Sbjct: 226 PNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRI 285
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL- 104
VTWN MI GYA+N E+AI L++D+ S D +T + IL+ C+ G
Sbjct: 286 FDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGAL 345
Query: 105 -VYAEVEIFNS 114
+ +VEI+ S
Sbjct: 346 DLGKQVEIYAS 356
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + +C+ L ++ GR +++ G D V + I +Y CG
Sbjct: 125 PNNLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKV 184
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY++ + +A+ L+++++ +G + + ++ V++L C G
Sbjct: 185 FDEISQKDLVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELG 242
>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 585
Score = 89.0 bits (219), Expect = 6e-16, Method: Composition-based stats.
Identities = 51/196 (26%), Positives = 96/196 (48%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +VLS+C+ + +L +G ++ + + D+ +G+A +++Y CG
Sbjct: 209 VAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSL 268
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TW+ MI G A + A+SL+ ++I+ G++ + +TF+ +L C+H G
Sbjct: 269 KVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVG 328
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F+SM H V P+ C+ M +K D ++W L
Sbjct: 329 LVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTL 388
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C++H NV +A++A
Sbjct: 389 LGACRIHKNVEIAEEA 404
Score = 44.3 bits (103), Expect = 0.016, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 35 GYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVA 94
G +IF G+ + + +W+ MI YA+ ++A+ L++++ +GV D ++ V+
Sbjct: 164 GMAREIFDGTRDRDAF-----SWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVS 218
Query: 95 ILTPCSHSGLVYAEVEIFNSMEHDH-EVKPKCLMPYKDDLVVWGDLVSSCQV 145
+L+ CS G + E+ +E + EV K D GD+ +S +V
Sbjct: 219 VLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKV 270
>gi|326520249|dbj|BAK07383.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 637
Score = 89.0 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 58/201 (28%), Positives = 97/201 (48%), Gaps = 48/201 (23%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND---IFVGSAPINIYCNCG----- 54
PT F + L +CAKL + GR++ I++ G D IF+ +A I++Y CG
Sbjct: 302 PTPFALVSSLGACAKLGLVTRGREVHGFILRRRIGLDPFNIFIHNALIDMYSKCGDMATA 361
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++WN M+ G++ N +Q+++++K ++ + V+ VTF+A+LT CSH+
Sbjct: 362 MLVFARMSERDFISWNSMVTGFSHNGQGKQSLAMFKRMLDAEVQPTYVTFLAVLTACSHA 421
Query: 103 GLVYAEVEIFNSMEHDHEVKPKC--LMPYKDDL-------------------------VV 135
GLV I SM++ H V+P+ + D L
Sbjct: 422 GLVTDGRRILESMQY-HGVEPRAEHYASFIDALGRNHQLEEASEFIKGLSSRIGPGTTGS 480
Query: 136 WGDLVSSCQVHSNVRLAKKAA 156
WG L+ +C+VH N +A+K A
Sbjct: 481 WGALLGACRVHGNTEIAEKVA 501
>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic [Vitis vinifera]
gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
Length = 880
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F + LS+ A + + G+Q+ VK G G+ I V + +++Y CG
Sbjct: 521 FSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLE 580
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN +I G A N +V A+S ++D+ +GV+ D +T + +L CSH GLV
Sbjct: 581 ITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMG 640
Query: 109 VEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQ 144
++ F SM H ++P+ CL MP+K D +++ L+ +C+
Sbjct: 641 LDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACK 700
Query: 145 VHSNVRLAKKAA 156
+H N+ L + A
Sbjct: 701 LHGNIPLGEHMA 712
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP +F +T L SC+ L G + + K G+ ++ +GSA I+ Y CG
Sbjct: 113 YPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYR 172
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+W M+ + E QA+ LY +I +GV + TFV +L S GL
Sbjct: 173 VFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLGL 232
Query: 105 VYAEV 109
Y ++
Sbjct: 233 NYGKL 237
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F ++ +L++C+ + +L LG+QI +R+V G ND+ VG++ +++Y C
Sbjct: 313 VVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDA 372
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++W +I G++E+ E++I ++ + GV+ + T IL C
Sbjct: 373 VRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGAC 429
Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV 55
V P F +T+L +C + SL R++ I+K+ ND+ VG+A ++ Y G+
Sbjct: 415 VRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGM 469
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F F +L++ + L L G+ + ++ ++ + +A +++YC C
Sbjct: 213 VAPNEFTFVKLLAASSFLG-LNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAV 271
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
W +I G+ ++ +AI+ + ++ SGV + T+ IL CS
Sbjct: 272 KVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACS 328
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 41/193 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +VL +CA+L +L +G+ I ++G + +A + +Y CG
Sbjct: 247 VEPDEISIISVLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAY 306
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W+ MI G A + +AI L+K + + ++ +G+TF+ +L+ C+H+G
Sbjct: 307 QLFDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAG 366
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+ F+SM D+ ++P+ CL MP K D +WG L
Sbjct: 367 FWNEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSL 426
Query: 140 VSSCQVHSNVRLA 152
+SSC+ HSN+ +A
Sbjct: 427 LSSCRTHSNLDIA 439
Score = 42.0 bits (97), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/151 (19%), Positives = 57/151 (37%), Gaps = 48/151 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P +F F V+ SC+ L LG+Q+ + K G ++I + +A I++Y C
Sbjct: 115 IFPDRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAH 174
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V+W MI GY
Sbjct: 175 KVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYAD 234
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
A+ +++ + GV+ D ++ +++L C+ G
Sbjct: 235 ALYVFRQMQIVGVEPDEISIISVLPACAQLG 265
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 91/193 (47%), Gaps = 43/193 (22%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q T+VL +C L+ L LGRQ+ ++K + D+ + +A I++YC CG
Sbjct: 253 QATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFS 310
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
++W+ M+ G A+N Y QA+ L++ + SG + + +T + +L CSH+GLV
Sbjct: 311 RMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEK 370
Query: 108 EVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSC 143
F SM+ V P CL M + D V W L+ +C
Sbjct: 371 GWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGAC 430
Query: 144 QVHSNVRLAKKAA 156
+VH NV LA AA
Sbjct: 431 RVHRNVDLAIYAA 443
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 22/126 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F +++VL +C L +L RQ+ I+K G +D+FV SA I++Y
Sbjct: 151 VRPNMFTYSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNAL 207
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I G+A+N +A++L+K + +G D T ++L C +G
Sbjct: 208 GVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRAC--TG 265
Query: 104 LVYAEV 109
L E+
Sbjct: 266 LALLEL 271
>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P Q L + A L++L +G Q+ +K G+GND+FV +A + +Y G
Sbjct: 452 PDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENV 511
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I GYA N ++A+ L++ + G+ D VTF +L+ C+H G V
Sbjct: 512 FAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFV 571
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ +F SM + +KP+ C+ M +WG L+
Sbjct: 572 DQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLW 631
Query: 142 SCQVHSNVRLAKKAA 156
+C++H N+ LAK +A
Sbjct: 632 ACRIHHNLELAKYSA 646
Score = 39.7 bits (91), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 16/100 (16%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+WN MI GY NE VE A L+ + K D ++ ++T + G + E+FN
Sbjct: 78 VSWNSMIAGYLHNELVEDAARLFDRMF----KRDIYSWTLMITCYTRIGELEKARELFN- 132
Query: 115 MEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
L+P K D V L++ R AKK
Sbjct: 133 -----------LLPDKQDTVCRNALIAGYAKKRLFREAKK 161
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 25/137 (18%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+T +++ ++ L R+IL + Y N I +A IN Y G
Sbjct: 298 WTAMINGYVRVGKLLQAREILNLM---PYKN-IAAQTAMINGYLQSGRMDEANEIFSQIS 353
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V WN MI GYA ++A+ L+++++ D V++ ++ + +G + +E
Sbjct: 354 VRDSVCWNSMITGYAHCGRTDEALRLFQEMVCK----DMVSWNTMIAAYAQAGQMDKALE 409
Query: 111 IFNSMEHDHEVKPKCLM 127
+FN M+ + V L+
Sbjct: 410 MFNEMQERNVVSWNSLI 426
>gi|147844170|emb|CAN80560.1| hypothetical protein VITISV_031385 [Vitis vinifera]
Length = 730
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 32/173 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F FT+ L++CA L+S+ G+QI +++ D+ V +A +N+Y CG
Sbjct: 307 VRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTSLYRDLGVDNALVNMYAKCGCIGYAY 366
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G+ + E+A+ L++ + A G++ D VTF+ +LT C+H+G
Sbjct: 367 DIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNAIGIRPDSVTFIGLLTACNHAG 426
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKAA 156
L + F P+ +D VV L+S+ ++H +V + ++ A
Sbjct: 427 LAEEYMRKF---------------PFWNDPVVLVSLLSASRLHGDVVIGERLA 464
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++ F +V+S+CA LS+L G++I +R +K GY + FV ++ I++Y C
Sbjct: 106 PNEYVFASVISACASLSALTQGQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSV 165
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V++N +I G+ EN+ +E+ +K + G+ D F+ +L C+
Sbjct: 166 FTNTPEPNCVSYNALITGFVENQQLERGFEFFKLMXQQGLIPDRFAFMGVLGICT 220
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 20/103 (19%)
Query: 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTW 57
C +++L G + ++K G +D+F+ + +N+Y CG V+W
Sbjct: 20 CDIVNALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEMFEKNLVSW 79
Query: 58 NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ MI GY + + AI LY + + + F ++++ C+
Sbjct: 80 SAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACA 119
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 42/193 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
PT +VLS+CA L +L LGR + + K G G+ + V +A I++Y CG
Sbjct: 232 PTSVTVISVLSACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDV 291
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
W+ MI YA + Y +AISL++++ G+K D +TF+ +L CSHSGLV
Sbjct: 292 FQGMESKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLV 351
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
++ F+ M+ DH + P C+ +P ++W L+S
Sbjct: 352 SEGLQYFDDMK-DHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLS 410
Query: 142 SCQVHSNVRLAKK 154
+C H + L K+
Sbjct: 411 ACGGHGDFELGKR 423
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F ++L +CA + GRQ VK G + +V IN+Y CG
Sbjct: 129 VAPDTYTFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAAR 188
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N MI + +A+ L++++ G+K VT +++L+ C+ G
Sbjct: 189 VMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVLSACALLG 248
>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
Length = 617
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F F++++ CA + L G Q+ +++K D FVGS +++Y CG
Sbjct: 241 VEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSM 300
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN +I+ +A++ + +AI + +I SG++ + + FV++LT CSH+G
Sbjct: 301 QLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAG 360
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV ++ F SM+ H ++PK C+ MP K + W L
Sbjct: 361 LVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSL 420
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C++ + L + AA
Sbjct: 421 LGACRMRGSKELGEVAA 437
Score = 42.4 bits (98), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT-------- 56
Q F +VLS+ L +L + I + K G+ ++ V +A I++Y
Sbjct: 143 QHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLK 202
Query: 57 -----WN-----EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
WN MI GY E + VE+A+ +Y ++ GV+ + TF +++ C+ L+
Sbjct: 203 IDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALL 261
Score = 39.7 bits (91), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT+F ++ + A L + G Q+ V+ G+ ++FV S ++Y CG
Sbjct: 37 VAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEAC 96
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILT 97
V W MI GYA+N +E A+ ++D+ G V D F ++L+
Sbjct: 97 RVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLS 151
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 41/194 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P VL++CA+L L G+ + + + +F+G+A +++Y CG
Sbjct: 339 VRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAM 398
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ W MI G A + +A+ L+ + GVK D + F+ L C+H+G
Sbjct: 399 EVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTG 458
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV E+F+SM + +KPK C+ MP K D ++WG L
Sbjct: 459 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGAL 518
Query: 140 VSSCQVHSNVRLAK 153
++ C+ H NV LA+
Sbjct: 519 MAGCRFHKNVELAE 532
Score = 38.9 bits (89), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ M++GY + +A+ L+ + A GV+ D V +L C+ G++
Sbjct: 309 VSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVL 359
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 41/194 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P VL++CA+L L G+ + + + +F+G+A +++Y CG
Sbjct: 339 VRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAM 398
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ W MI G A + +A+ L+ + GVK D + F+ L C+H+G
Sbjct: 399 EVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTG 458
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV E+F+SM + +KPK C+ MP K D ++WG L
Sbjct: 459 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGAL 518
Query: 140 VSSCQVHSNVRLAK 153
++ C+ H NV LA+
Sbjct: 519 MAGCRFHKNVELAE 532
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ M++GY + +A+ L+ + A GV+ D V +L C+ G++
Sbjct: 309 VSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVL 359
>gi|359489798|ref|XP_002274780.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 804
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F ++L +C+ + + LG I K GY ++ F+ SA I++YC G
Sbjct: 310 PNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFLSSALIDLYCKFGRINQGRAI 369
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V W+ MI+GY N ++A+ + +++A GVK + V F+++L+ CSH GL
Sbjct: 370 FNEIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLACGVKPNEVVFISVLSACSHCGLE 429
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F+SME + + PK C+ MP + D +WG L++
Sbjct: 430 HEGWSCFSSMEQKYGIIPKLPHYACMVDLISRRGNIEGALQFVNKMPMEPDKRIWGALLA 489
Query: 142 SCQ-VHSNVRLAKKAA 156
C+ H ++ +A+ A
Sbjct: 490 GCRSTHGSIEIAELVA 505
>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Brachypodium distachyon]
Length = 631
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V T+F + +LS+CA L+ G Q+ I+K G+ + FV ++ +++Y CG
Sbjct: 255 VELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAY 314
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI ++ + + +A+ L++ + G+ + VT++++L+ CSH+G
Sbjct: 315 ALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAG 374
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDL 139
LV F+ + D V+P L MP++ +WG L
Sbjct: 375 LVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSL 434
Query: 140 VSSCQVHSNVRLAKKAA 156
+ SC+ ++N+RLA+ AA
Sbjct: 435 LGSCRNYNNIRLARIAA 451
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 24/142 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ ++F ++ + +CA ++ +Q+ T +K ++ FVG+A +++Y C
Sbjct: 154 THMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDAC 213
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW+ + GY +N E+A+ L++ GV+ T AIL+ C+
Sbjct: 214 WVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLA 273
Query: 104 LVYAEVEIFNSMEHDHEVKPKC 125
L +++ H V KC
Sbjct: 274 LKIEGIQL-------HAVILKC 288
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 17/106 (16%)
Query: 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------- 54
L CAK SL +G+ + G D + IN+Y CG
Sbjct: 64 LQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSI 123
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN MI GY + QA+ L+ + G T + + C+
Sbjct: 124 VSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACA 169
>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P Q FT+ L+SC L +L GR+I T VK G D+FVG++ I +Y CG
Sbjct: 284 VLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGV 343
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G A++ A++ + ++ S V+ D +TF +L+ CSHSG
Sbjct: 344 VIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSG 403
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+ +F + + K C+ MP K + +VW L
Sbjct: 404 MSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVL 463
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C +HS + +A++AA
Sbjct: 464 LSACTMHSKLEVAERAA 480
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT + V+++CA S+L+ G QI + K GY D ++ +A I Y NC
Sbjct: 183 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 242
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V W ++ GY N E A+ ++ +++ GV + +F + L C
Sbjct: 243 RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSC 298
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 51 CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASG--VKHDGVTFVAILTPCSHSGLVYAE 108
C ++W MI G ++ E+A+ L++ ++ G VK T+ ++T C+++ +Y
Sbjct: 147 CRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQG 206
Query: 109 VEI 111
V+I
Sbjct: 207 VQI 209
>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
gi|194689034|gb|ACF78601.1| unknown [Zea mays]
gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
Length = 606
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 42/193 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
PT +VLS+CA L +L LGR + + K G G+ + V +A +++Y CG
Sbjct: 232 PTPVTVISVLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAV 291
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
W+ MI YA + Y +AISL++++ G+K D +TF+ +L CSHSGLV
Sbjct: 292 FQGMESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLV 351
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+ F+ M+ DH + P C+ +P ++W L+S
Sbjct: 352 SEGLRYFDDMK-DHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLS 410
Query: 142 SCQVHSNVRLAKK 154
+C H +V L K+
Sbjct: 411 ACGGHGDVELGKR 423
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F ++L +CA + GRQ VK G +V IN+Y CG
Sbjct: 129 VAPDTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAAR 188
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N MI + +A+ L++++ A G+ VT +++L+ C+ G
Sbjct: 189 VTFGRADGDCVVSYNAMIAAAVRSSRPGEALVLFREMQAKGLNPTPVTVISVLSACALLG 248
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 41/194 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P + VL +CA L +L GR I I + ++FVG+A I++Y CGV
Sbjct: 241 PVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKI 300
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TWN +I GYA N E A+ + +I K D VTF+ +L C H GLV
Sbjct: 301 FKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCACCHQGLV 360
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
F SM+ + ++P+ C+ M + D ++W +L+
Sbjct: 361 NEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWRELLG 420
Query: 142 SCQVHSNVRLAKKA 155
+C++H N++L + A
Sbjct: 421 ACRIHGNIQLGEFA 434
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 17/136 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++P F TVL S A+L LG+ I I++ G+ ++++V +A +N+Y C
Sbjct: 138 IFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSVSDAR 197
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I GY N + I +++++ +G K VT V +L C+H G
Sbjct: 198 QVFDEIPDRNIVSWNALITGYNHNRMFRKVIDVFREMQIAGAKPVEVTMVGVLLACAHLG 257
Query: 104 LVYAEVEIFNSMEHDH 119
+ I + ++H+
Sbjct: 258 ALNQGRWIDDYIDHNR 273
>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26782, mitochondrial; Flags: Precursor
gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 41/187 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
+TVL + + +L +G+ I ++++ G +D+ VG++ I++YC CG
Sbjct: 290 LSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK 349
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+W MI GY + + +A+ L+ +I SGV+ + +TFV++L CSH+GL
Sbjct: 350 NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWR 409
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
FN+M+ V+P C+ M K D ++W L+++C++H
Sbjct: 410 WFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIH 469
Query: 147 SNVRLAK 153
NV LA+
Sbjct: 470 KNVELAE 476
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 23/124 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+YPT+ F + +C+ L +F G+Q + GY +DIFV SA I +Y CG
Sbjct: 72 LYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDAR 131
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF------VAILT 97
V+W MI GY N A+SL+KD++ D F V++++
Sbjct: 132 KVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVIS 191
Query: 98 PCSH 101
CS
Sbjct: 192 ACSR 195
Score = 39.3 bits (90), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/175 (19%), Positives = 76/175 (43%), Gaps = 29/175 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++ +V+S+C+++ + L I + ++K G+ + VG+ ++ Y G
Sbjct: 179 MFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAV 238
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCS 100
V++N ++ YA++ +A +++ ++ + V + +T +L S
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298
Query: 101 HSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155
HSG + I HD ++ M +DD++V ++ V A+KA
Sbjct: 299 HSGALRIGKCI-----HDQVIR----MGLEDDVIVGTSIIDMYCKCGRVETARKA 344
>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
mitochondrial [Vitis vinifera]
Length = 676
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P Q FT+ L+SC L +L GR+I T VK G D+FVG++ I +Y CG
Sbjct: 300 VLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGV 359
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G A++ A++ + ++ S V+ D +TF +L+ CSHSG
Sbjct: 360 VIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSG 419
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+ +F + + K C+ MP K + +VW L
Sbjct: 420 MSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVL 479
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C +HS + +A++AA
Sbjct: 480 LSACTMHSKLEVAERAA 496
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT + V+++CA S+L+ G QI + K GY D ++ +A I Y NC
Sbjct: 199 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSL 258
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V W ++ GY N E A+ ++ +++ GV + +F + L C
Sbjct: 259 RVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSC 314
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 51 CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASG--VKHDGVTFVAILTPCSHSGLVYAE 108
C ++W MI G ++ E+A+ L++ ++ G VK T+ ++T C+++ +Y
Sbjct: 163 CRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQG 222
Query: 109 VEI 111
V+I
Sbjct: 223 VQI 225
>gi|224141027|ref|XP_002323876.1| predicted protein [Populus trichocarpa]
gi|222866878|gb|EEF04009.1| predicted protein [Populus trichocarpa]
Length = 410
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +V+S+C L L +G + + I ++G+ + + +A I++Y CG
Sbjct: 199 VRPDEVTLVSVISACTNLGDLQMGYSVHSYIDENGFRWMVSLCNALIDMYAKCGCMDRAW 258
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI A N E A L+ + GV DGVTF+A+LT +H G
Sbjct: 259 QVFNSMSRKSLVTWNSMISACANNRNPEDAFGLFSRMFNYGVAPDGVTFLAVLTAYAHVG 318
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +F SM+ DH ++ + C+ MP + VVWG L
Sbjct: 319 LVDEGYRLFESMQRDHGIEARIEHYGCVVNMLGQAGWLEEAFELITSMPLPSNDVVWGVL 378
Query: 140 VSSCQVHSNVRLAKK 154
+++C+ H +V + ++
Sbjct: 379 LAACRKHGDVYMGER 393
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W M+ Y++ +Y +A+ LY ++ GV+ D VT V++++ C++ G
Sbjct: 169 VSWTTMVSAYSQAKYSREALELYVTMLDKGVRPDEVTLVSVISACTNLG 217
>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
Length = 659
Score = 88.6 bits (218), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 41/187 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
+TVL + + +L +G+ I ++++ G +D+ VG++ I++YC CG
Sbjct: 290 LSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK 349
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+W MI GY + + +A+ L+ +I SGV+ + +TFV++L CSH+GL
Sbjct: 350 NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWR 409
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
FN+M+ V+P C+ M K D ++W L+++C++H
Sbjct: 410 WFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIH 469
Query: 147 SNVRLAK 153
NV LA+
Sbjct: 470 KNVELAE 476
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 23/124 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+YPT+ F + +C+ L +F G+Q + GY +DIFV SA I +Y CG
Sbjct: 72 LYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDAR 131
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF------VAILT 97
V+W MI GY N A+SL+KD++ D F V++++
Sbjct: 132 KVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVIS 191
Query: 98 PCSH 101
CS
Sbjct: 192 ACSR 195
Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/175 (19%), Positives = 76/175 (43%), Gaps = 29/175 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++ +V+S+C+++ + L I + ++K G+ + VG+ ++ Y G
Sbjct: 179 MFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAV 238
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCS 100
V++N ++ YA++ +A +++ ++ + V + +T +L S
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298
Query: 101 HSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155
HSG + I HD ++ M +DD++V ++ V A+KA
Sbjct: 299 HSGALRIGKCI-----HDQVIR----MGLEDDVIVGTSIIDMYCKCGRVETARKA 344
>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 705
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 42/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT ++LS CA L+SL G+Q+ ++V+ + D++V S + +Y CG
Sbjct: 327 VRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSK 386
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHS 102
+ WN +I GYA + E+A+ ++ ++ SG K + VTFVA L+ CS++
Sbjct: 387 LIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYA 446
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
G+V ++I+ SME VKP C+ M + D VWG
Sbjct: 447 GMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGS 506
Query: 139 LVSSCQVHSNVRLAK 153
L+ +C+ HS + +A+
Sbjct: 507 LLGACRTHSQLDVAE 521
>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
Length = 704
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 42/194 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTR-IVKDGYGNDIFVGSAPINIYCNCG----- 54
V P +VLS+CA+L L LGR I IV + G + +G+A I+++ CG
Sbjct: 373 VDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEA 432
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN MI +A + E+AI L++ + + D +TF+ +L CSHS
Sbjct: 433 SKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHS 492
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV F ME + ++P+ C+ MP + D WG
Sbjct: 493 GLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGA 552
Query: 139 LVSSCQVHSNVRLA 152
L+++C++H NV +
Sbjct: 553 LLNACRMHGNVEIG 566
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 18/93 (19%)
Query: 29 TRIVKDGYG-NDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYV 70
R V DG D++ ++ +N Y CG V+W+ MI Y++
Sbjct: 299 AREVFDGMEVKDVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQP 358
Query: 71 EQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
E+A+ L++++IA+GV T V++L+ C+ G
Sbjct: 359 EEAVWLFREMIAAGVDPIDATLVSVLSACAQLG 391
>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
Length = 869
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 55/199 (27%), Positives = 92/199 (46%), Gaps = 43/199 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T+L CA L++ G++I ++ +DI VGSA +++Y CG
Sbjct: 491 VVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSR 550
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHS 102
+TWN +I Y + ++AI+L+ ++ S K + VTF+A L CSHS
Sbjct: 551 AVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHS 610
Query: 103 GLVYAEVEIFNSMEHDHEVKP-------------------------KCLMPYKDDLVVWG 137
G+V +E+F+SM+ +H V+P + P + + W
Sbjct: 611 GMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWS 670
Query: 138 DLVSSCQVHSNVRLAKKAA 156
+ +C++H NV L + AA
Sbjct: 671 SFLGACRLHRNVPLGEIAA 689
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 25/123 (20%)
Query: 4 TQFPFTTVLSSCAKLSS-LFLGRQILTRIVKDGY--GNDIFVGSAPINIYCNCG------ 54
+ F +VL +C+ L+ L LGR+ +K+G+ G++ F +A +++Y G
Sbjct: 161 SSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQ 220
Query: 55 ----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTP 98
VTWN M+ ++ +AI + D++A GV+ DG+TF + L
Sbjct: 221 MLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPA 280
Query: 99 CSH 101
CS
Sbjct: 281 CSQ 283
Score = 48.5 bits (114), Expect = 9e-04, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 21/123 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCN---CGVT 56
V P F + L +C++L L LGR++ ++KD + FV SA +++Y + GV
Sbjct: 267 VRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVA 326
Query: 57 ----------------WNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPC 99
WN M+ GYA+ E+A+ L+ + A +GV T +L C
Sbjct: 327 RRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPAC 386
Query: 100 SHS 102
+ S
Sbjct: 387 ARS 389
>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Brachypodium distachyon]
Length = 580
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P F LS+CA+ +L LGR++ RIV + +F+GSA +N+Y CGV
Sbjct: 204 PDSMTFVATLSACAQAGALDLGREVERRIVSERMDISVFLGSALVNMYARCGVVDKARQW 263
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TW MI GY + + +AI LY + G + VTFVA+L+ C+H+GL+
Sbjct: 264 FDVLQERNVVTWTSMIAGYGMHGHGHEAIKLYHLMRCKGPPPNDVTFVAVLSACAHAGLI 323
Query: 106 YAEVEIFNSMEHDHEVKPKC-------------------------LMPYKDDLVVWGDLV 140
+ F M+ + + P+ MP VW ++
Sbjct: 324 TEGRDAFACMKRVYGLAPRVEHYCSMVDMYGRAGRLEEAMQFIRDSMPGDPGPEVWTAIL 383
Query: 141 SSCQVHSNVRLAKKAA 156
+C++H N L + A
Sbjct: 384 GACKMHKNFSLGVEVA 399
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 17/117 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F FT V +CA LS+L G + + G+G+D FV +A + +Y CG
Sbjct: 104 SSFAFTAVAKACADLSALRTGMTVHAHSILLGFGSDRFVLTALVVLYSKCGRLPVARKLF 163
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GY +N EQ I +YK++ + D +TFVA L+ C+ +G
Sbjct: 164 DAIRDKNVVAWNAMISGYEQNGLAEQGIEVYKEMKVAKAVPDSMTFVATLSACAQAG 220
>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 637
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 95/194 (48%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV-------- 55
QF ++V+ +C+ L++L G+Q+ I K G+G+++FV S+ +++Y CG
Sbjct: 264 NQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIF 323
Query: 56 ---------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
WN +I G+A++ ++ + L++ + G+ + VTF ++L+ C H+GLV
Sbjct: 324 SEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVE 383
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
F M + + P C+ +P++ +WG L++S
Sbjct: 384 EGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLAS 443
Query: 143 CQVHSNVRLAKKAA 156
C+V N+ LA+ AA
Sbjct: 444 CRVCKNLELAEVAA 457
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++F ++VLS+C +++ +K +++VG+A +++Y CG
Sbjct: 163 SEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVF 222
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTW+ M+ GY +++ E+A+ LY+ ++ + T +++ CS+
Sbjct: 223 ESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSN 277
Score = 39.3 bits (90), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F +L CA+ ++ + + ++ D+ + + IN Y CG
Sbjct: 66 FIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGML 125
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN MI Y N +A+ ++ ++ G K T ++L+ C
Sbjct: 126 ERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSAC 174
>gi|297741511|emb|CBI32643.3| unnamed protein product [Vitis vinifera]
Length = 1400
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P FT +LS+C SL GR + ++ G+ + + V +A I++YC CG
Sbjct: 1071 LKPNDLTFTCLLSTCTGGGSLGRGRSAHCQTIEMGFDSYVHVANALISMYCKCGNVEDAY 1130
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI G+A++ QAI L++++ +K D +TF+ +L+ C H G
Sbjct: 1131 YIFERMDGKDIVSWNSMIAGHAQHGLAVQAIDLFEEMKKQKLKPDAITFLGVLSSCRHVG 1190
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV FNSM +H VKP+ C+ MP + ++WG L
Sbjct: 1191 LVKQGQFYFNSMV-EHGVKPELDHFACVVDLLGRAGLLEEARDFIVKMPIHPNAIIWGSL 1249
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC++H +V L +AA
Sbjct: 1250 LSSCRLHGSVWLGIEAA 1266
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 17/107 (15%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
LS CA SL G Q ++ G+ +++VGS I+ Y CG
Sbjct: 980 ALSLCASSRSLKSGVQFHCLAIRTGFVGNVYVGSCLISFYSKCGELCHAYRVFEEMPVKN 1039
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W +I G+A+ V+ + LY + S +K + +TF +L+ C+
Sbjct: 1040 VVSWTAIIAGFAQEWLVDGCLELYSRMRNSTLKPNDLTFTCLLSTCT 1086
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V T+ ++++L +CA L++L LG Q+ K YG D+ VG+A I++Y CG
Sbjct: 345 VQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDAR 404
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I GY+ + +AI ++ + + K D +TFV +L+ CS++G
Sbjct: 405 FMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTG 464
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
+ + F SM+ D+ ++P C+ +P++ +++W L
Sbjct: 465 RLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRAL 524
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C +H++V L + +A
Sbjct: 525 LGACVIHNDVELGRISA 541
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P QF F++VL + A + SL L + I +K G D+FV +A + Y CG
Sbjct: 244 VIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSM 303
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I Y + E+A+SL+ +++ V+ VT+ +IL C+
Sbjct: 304 ELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACA 360
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 17/111 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F FTTVL + LGR + ++K GYG++ F+G+A I+ Y G
Sbjct: 47 FVFTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDE 106
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+W MI YAEN+ +A+ + + +G K + TF +L C
Sbjct: 107 ISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKAC 157
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F VL +C L + G+ + ++K Y D++VG + +Y CG
Sbjct: 145 PNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRA 204
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+ W+ MI +A++ E+A+ ++ + + V + TF ++L
Sbjct: 205 FGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVL 255
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 41/193 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++L+SCA+ L LG+++ T I + Y + V +A +++Y CG
Sbjct: 138 PDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSV 197
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN M+ G A + + E+A+ L+ + G + D VT VA+L C H+G V
Sbjct: 198 FNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKVTLVAVLCACVHAGFV 257
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ FN+ME D+ + P C+ MP + ++V+WG L+
Sbjct: 258 DEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQSMPVEPNVVIWGTLLG 317
Query: 142 SCQVHSNVRLAKK 154
+C++H+ V LA++
Sbjct: 318 ACRMHNAVGLAEE 330
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+W ++ GYA + AI ++ + +G+K D T ++IL C+ SGL+ + S
Sbjct: 106 VSWTIIVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTS 165
Query: 115 MEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143
+E ++ KC + + LV D+ + C
Sbjct: 166 IER---IRYKCSVNVSNALV---DMYAKC 188
>gi|222616851|gb|EEE52983.1| hypothetical protein OsJ_35654 [Oryza sativa Japonica Group]
Length = 632
Score = 88.6 bits (218), Expect = 8e-16, Method: Composition-based stats.
Identities = 57/194 (29%), Positives = 90/194 (46%), Gaps = 42/194 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTR-IVKDGYGNDIFVGSAPINIYCNCG----- 54
V P +VLS+CA+L L LGR I IV + G + +G+A I+++ CG
Sbjct: 373 VDPIDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEA 432
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN MI +A + E+AI L++ + + D +TF+ +L CSHS
Sbjct: 433 SKLFDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHS 492
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV F ME + ++P+ C+ MP + D WG
Sbjct: 493 GLVSEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGA 552
Query: 139 LVSSCQVHSNVRLA 152
L+++C++H NV +
Sbjct: 553 LLNACRMHGNVEIG 566
Score = 44.3 bits (103), Expect = 0.017, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 17/82 (20%)
Query: 39 DIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQAISLYKDII 81
D++ ++ +N Y CG V+W+ MI Y++ E+A+ L++++I
Sbjct: 310 DVYSWTSMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMI 369
Query: 82 ASGVKHDGVTFVAILTPCSHSG 103
A+GV T V++L+ C+ G
Sbjct: 370 AAGVDPIDATLVSVLSACAQLG 391
>gi|255583926|ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527557|gb|EEF29678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 679
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 22/143 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TVL CA L++L G++I V++ +++ VGSA +++Y CG
Sbjct: 497 PNSITLMTVLPGCASLAALAKGKEIHAYAVRNALASEVTVGSALVDMYAKCGCLNLSRRV 556
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASG-----VKHDGVTFVAILTPCS 100
+TWN ++ Y + E+A+ L+KD++A G VK VT +AIL CS
Sbjct: 557 FDQMPIKNVITWNVIVMAYGMHGNGEEALELFKDMVAKGDNVGEVKPTEVTMIAILAACS 616
Query: 101 HSGLVYAEVEIFNSMEHDHEVKP 123
HSG+V +++F+ M+ DH ++P
Sbjct: 617 HSGMVDEGLKLFHRMKDDHGIEP 639
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCGVT--- 56
V P +VL +C+ L L G++I ++ G + FVGSA +++YCNCG
Sbjct: 278 VKPDGVTLASVLPACSYLEMLGTGKEIHAYALRSGDLIENSFVGSALVDMYCNCGQVGSG 337
Query: 57 --------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
WN MI GYA+NE+ E+A+ L+ +++A T +A + P S
Sbjct: 338 RRVFDGILERKTGLWNAMIAGYAQNEHDEKALMLFIEMVAVAGLCPNTTTMASIVPAS-- 395
Query: 103 GLVYAEVEIFNSMEHDH 119
A E F S E H
Sbjct: 396 ----ARCESFFSKESIH 408
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 21/129 (16%)
Query: 3 PTQFPFTTVLSSCAKL---SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
P+ F + + +C+ L L LG+QI ++G+ + F +A + +Y N G
Sbjct: 177 PSSFTLVSPVIACSNLRKHEGLRLGKQIHGYCFRNGHWS-TFTNNALMTMYANLGRLDDA 235
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++WN MI +++NE +A+ + ++ GVK DGVT ++L CS+
Sbjct: 236 KFLFKLFEDRNLISWNTMISSFSQNERFVEALMSLRYMVLEGVKPDGVTLASVLPACSYL 295
Query: 103 GLVYAEVEI 111
++ EI
Sbjct: 296 EMLGTGKEI 304
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 22/126 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCG----- 54
V P + F VL + L L LG+QI +VK GY + + + ++ +N Y C
Sbjct: 73 VSPDSYAFPVVLKAVTGLQDLNLGKQIHAHVVKYGYESSSVAIANSLVNFYGKCSELDDV 132
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS-- 100
V+WN +I + + E A+ ++ ++A ++ T V+ + CS
Sbjct: 133 YKVFDRINERDLVSWNSLISAFCRAQEWELALEAFRFMLAEDLEPSSFTLVSPVIACSNL 192
Query: 101 --HSGL 104
H GL
Sbjct: 193 RKHEGL 198
>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
Length = 1026
Score = 88.6 bits (218), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P Q F + L +CA +SS+ G + + I G+ +D SA +++Y CG
Sbjct: 728 VLPDQATFVSALRACAVVSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSM 787
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++WN MI G+A+N Y E A+ ++ ++ S V D VTF+ +LT CSHS
Sbjct: 788 QVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHS 847
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
G V IF+ M + + ++P+ C+ + ++ D VW
Sbjct: 848 GRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEPDAKVWAT 907
Query: 139 LVSSCQVHSNVRLAKKAA 156
++ +C++H + ++AA
Sbjct: 908 MLGACRIHGDDIRGQQAA 925
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 17/116 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP F ++++LS+CA L L LG Q+ + I+K+ + +++FVG+A +++Y G
Sbjct: 425 YPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQ 484
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I GY + E +A L++ + G+ D V+ +IL+ C+
Sbjct: 485 QFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSACA 540
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 18/116 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + ++LS+CA + L G+Q+ VK G ++ GS+ I++Y CG
Sbjct: 525 ILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAH 584
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+ N +I GYA+ +EQA++L++D++ G+ +TF ++L C
Sbjct: 585 KILACMPERSVVSMNALIAGYAQIN-LEQAVNLFRDMLVEGINSTEITFASLLDAC 639
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V+P +F F VLSSCA+L + GRQ+ +VK G+ + + A I +Y C
Sbjct: 156 VWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDAR 215
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY + E+A+ +++++ G + D V FV ++ G
Sbjct: 216 SIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLG 275
Query: 104 LVYAEVEIFNSM 115
+ ++F+ M
Sbjct: 276 RLDNASDLFSRM 287
Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ T+ +VLS+ A L++L G + +K G ++++VGS+ +++Y CG
Sbjct: 323 IKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAK 382
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V WN M+ GY +N Y + + L+ ++ + G D T+ +IL+ C+
Sbjct: 383 KVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACA 439
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG-NDIFVGSAPINIYCNC------ 53
+ T+ F ++L +C + L LGRQI + I+K G +D F+G + + +Y N
Sbjct: 625 INSTEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDA 684
Query: 54 ------------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V W MI G ++N+ A+ LYK++ + V D TFV+ L C+
Sbjct: 685 SVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAV 744
Query: 102 SGLVYAEVE----IFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAK 153
+ E IF++ E+ L+ D GD+ SS QV + K
Sbjct: 745 VSSIKDGTETHSLIFHTGFDSDELTSSALV---DMYAKCGDVKSSMQVFKEMSRKK 797
>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
Length = 697
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F ++LS ++ L GRQ+ + G + + SA IN+Y CG
Sbjct: 398 PTDFALASLLSVSGIMAVLEQGRQVHALALYLGLEQNPTIRSALINMYSKCGSIIEASKV 457
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+ MI+GYAE+ E+AI L++ + + D VTF+++LT CSHSG +
Sbjct: 458 FEEKDRTDIVSLTAMINGYAEHGKCEEAIDLFEKSLKLSFRPDDVTFISVLTACSHSGQL 517
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ FN M+ ++ ++P C+ MP+K D VVW L+
Sbjct: 518 DLGFQYFNLMQENYNMRPAKEHYGCMVDLLCRAGRLNDAEKMINEMPWKKDDVVWTTLLR 577
Query: 142 SCQVHSNVRLAKKAA 156
+C+ +V ++AA
Sbjct: 578 ACKEKGDVERGRRAA 592
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F L +CA L + GR+I T ++ G+ ++V ++ +Y CG
Sbjct: 199 FAFAIALKACADLRQVKYGREIHTHVIVKGFAAILWVANSLATMYTECGEMQDGLRLFES 258
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC-SHSGLVYA 107
V W +I Y E+A++ + + S V + TF + C S S LV+
Sbjct: 259 MSERDVVLWTSLITAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLSRLVWG 318
Query: 108 E 108
E
Sbjct: 319 E 319
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/114 (19%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F + ++CA LS L G Q+ + G G+ + V ++ + +Y C
Sbjct: 295 VSPNEQTFASTFAACASLSRLVWGEQLHGNVFSLGLGDSLSVSNSMMKMYSTCAKLDSAS 354
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
++W+ +I GY++ + E+ + + +G + ++L+
Sbjct: 355 VLFQGMRCRDIISWSTIIGGYSQAAFGEECFKYFSWMRQAGPQPTDFALASLLS 408
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 89/196 (45%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + ++LSSCAK+ +L G + I K+ G D +G+A I++Y CG
Sbjct: 496 VKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAY 555
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
W M+ YA +AI LY ++ GVK D VTF+A+L CSH G
Sbjct: 556 EIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGG 615
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + FN + + + P C+ MP + D+ +W L
Sbjct: 616 LVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSL 675
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C+ H NV LA++A
Sbjct: 676 MRACRSHHNVELAEQA 691
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 59/151 (39%), Gaps = 48/151 (31%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + TVLS+C L LGR + IV G D F+G+A +++Y CG
Sbjct: 364 VIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEAL 423
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V+WN M++ Y +++ +
Sbjct: 424 RTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNE 483
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ ++ + +S VK D T +++L+ C+ G
Sbjct: 484 SFEIFCKMQSSNVKPDKTTLISLLSSCAKVG 514
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F ++ +C K + LG ++ RI+K G+G + + + + +Y CG
Sbjct: 136 FHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMT 195
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN MI Y +A+ L+ +++ SGV D +T V++++ C+
Sbjct: 196 HRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCA 245
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/138 (18%), Positives = 59/138 (42%), Gaps = 23/138 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +++S+CAKL L +G+++ IV + + + +++Y CG
Sbjct: 230 VLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAH 289
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V W ++ GY ++ +++A L+ + + V++ +++
Sbjct: 290 GLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSL----VSWTTMMSGYVQ 345
Query: 102 SGLVYAEVEIFNSMEHDH 119
G +E+F M ++
Sbjct: 346 GGYYCESLELFQQMRFEN 363
>gi|297734800|emb|CBI17034.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 44/195 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F+ VL +CA L++ + + ++K G+ +DI + +A I+ CG
Sbjct: 210 PDRHMFSIVLKACAGLATERHALTVQSHVLKVGFEDDIVLANALIHACARCGSVALSKQV 269
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN M+ YA + ++A+ L+ + A + DG TFVA+L+ CSH+G+
Sbjct: 270 FDKMGSRDTVSWNSMLKAYAMHGQGKEALLLFSQMDA---QPDGATFVALLSACSHAGMA 326
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+IF +M ++H + P+ C+ MP + D VVW L+
Sbjct: 327 EEGAKIFETMSNNHGIVPQLDHYACMVDILGRAGQISEAKELIDKMPMEPDSVVWSALLG 386
Query: 142 SCQVHSNVRLAKKAA 156
SC+ H +LAK AA
Sbjct: 387 SCRKHGETKLAKLAA 401
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 20/113 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC-NCG------- 54
PT+F F +V+S+C + GRQ+ +K + + ++VG+A I +YC +CG
Sbjct: 7 PTEFAFASVISACGGDDNC--GRQVHALALKTSFDSCVYVGNALIMMYCKSCGGADEAWN 64
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI G+ +A+ L+ + G++ D T V+I +
Sbjct: 65 VYEAMGFRNLVSWNSMIAGFQVCGCGNRALELFSQMHVGGIRFDRATLVSIFS 117
>gi|224124454|ref|XP_002330027.1| predicted protein [Populus trichocarpa]
gi|222871452|gb|EEF08583.1| predicted protein [Populus trichocarpa]
Length = 502
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 93/186 (50%), Gaps = 41/186 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F FT+++++CA ++L G+Q+ I + G ++ + +A I++Y CG
Sbjct: 243 PNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKN 302
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W M+ GY + Y ++A+ L+ +++ SG++ D V F+A+L CSH+GLV
Sbjct: 303 FSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGLV 362
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ FN M D+ +KP C+ MP+ D VWG L+
Sbjct: 363 DQGLRYFNCMLDDYHIKPNQEIYGCVVGLLGRAGRVEEAYHLIRSMPFMADESVWGALLG 422
Query: 142 SCQVHS 147
+C+ H+
Sbjct: 423 ACKAHN 428
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 18/105 (17%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
+ + +CA + S LGRQI T ++K G+ +D+ V ++ +++YC CG
Sbjct: 149 SIAVRACASVGSNILGRQIHTAVIKHGFESDLPVMNSILDMYCRCGCLSEAKEYFNEMSE 208
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+TWN +I GY ++ +E + ++ + + G + TF +++
Sbjct: 209 KDLITWNTLIAGYERSDSIE-PLFIFSQMESEGFSPNCFTFTSLV 252
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 25/125 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQI----LTRIVKDGYGNDIFVGSAPINIYCNCGVT 56
V P F ++VL +C ++S+F G + + R +G+ I+V +A +++Y CGVT
Sbjct: 38 VPPNAFTISSVLKACKGMNSVFCGGLVHGLAIKRRFVEGF---IYVDNALMDMYATCGVT 94
Query: 57 ------------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTP 98
W +I GY +A+ ++++I G + + + +
Sbjct: 95 MRDACVVFHDIKEKNVVSWTTLIAGYTHRGNGSRAVQVFREISLEGAELNPHSISIAVRA 154
Query: 99 CSHSG 103
C+ G
Sbjct: 155 CASVG 159
>gi|302795440|ref|XP_002979483.1| hypothetical protein SELMODRAFT_51146 [Selaginella moellendorffii]
gi|300152731|gb|EFJ19372.1| hypothetical protein SELMODRAFT_51146 [Selaginella moellendorffii]
Length = 595
Score = 88.6 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 57/201 (28%), Positives = 96/201 (47%), Gaps = 45/201 (22%)
Query: 1 VYPTQFPFTTV---LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--- 54
V P + F T+ L++CA ++ L G +I R + G+ D+ V +A I++Y +CG
Sbjct: 369 VTPDEISFLTLVLALNACAGMAELAAGERIHRRAIDLGFDRDVGVITALIHMYASCGRLE 428
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
WN ++ G+A E+AI+L++ + SG + D + FV+IL+ CS
Sbjct: 429 QSQEIFHGAQEHTMFMWNALVSGFARRGQSERAIALFERMQQSGHRADAIGFVSILSACS 488
Query: 101 HSGLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MP-YKDDLVV 135
+GL+ F S+ HDH + P C+ MP +K V
Sbjct: 489 QAGLIGRGCGYFASLLHDHGILPYREHYACMIDLFGRAGRLEEAEEWLRKMPAHKLSKSV 548
Query: 136 WGDLVSSCQVHSNVRLAKKAA 156
W L+ +C +HS+V+ ++AA
Sbjct: 549 WETLLGACSIHSDVKRGRRAA 569
Score = 49.3 bits (116), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 24/123 (19%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT+ L++CA L L G +I + G D VG I++Y CG
Sbjct: 160 PTRVSIAAALTACANLLDLESGVEIHALAARSGVEAD--VGGLLIHMYAACGDLDAANRV 217
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+WN MI Y + E+A+SL + G+ D ++FV L C+
Sbjct: 218 FDVAMGGASINRDLSSWNSMITAYTDRNLWEEALSLVHQMHHQGMAFDDISFVTALNACA 277
Query: 101 HSG 103
+G
Sbjct: 278 AAG 280
Score = 38.5 bits (88), Expect = 0.97, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 23/112 (20%)
Query: 8 FTTVLSSCAKLS--SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F T L++CA + G + + + G D+ + +A +N+Y C
Sbjct: 269 FVTALNACAAAGYRGIPHGTSVHLCVAEAGREEDVIIRTALLNMYGKCRDLCRADAVFDA 328
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+ WN M A++E E+ ++LY +++ GV D ++F+ ++
Sbjct: 329 LRRSGQRLDLIAWNAMGSALAQHEEFERVLTLYGEMLLEGVTPDEISFLTLV 380
>gi|297818116|ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297322779|gb|EFH53200.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 652
Score = 88.6 bits (218), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 18/137 (13%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV---------- 55
+ F+ VL SC+ L++L LG+Q K + ++ FV S+ I +Y CGV
Sbjct: 355 YAFSAVLRSCSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENARKCFEQ 414
Query: 56 --------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
WN MI GYA++ + ++ L+ + VK D VTF AILT CSH+GL+
Sbjct: 415 ISSKHNTIAWNAMILGYAQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQE 474
Query: 108 EVEIFNSMEHDHEVKPK 124
+E+ NSME ++++P+
Sbjct: 475 GLELLNSMEPVYKIQPR 491
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 18/96 (18%)
Query: 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------------VTWNEMIHGY 64
L +Q+ +++K G ++I + +A I+ Y NCG ++WN MI G
Sbjct: 167 LLKQVHAKVLKLGLEHEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGL 226
Query: 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+++E E A L+ ++ + ++ D T+ I++ CS
Sbjct: 227 SKHEQKESAFELFTEMHRNWIETDIYTYTGIVSACS 262
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------- 53
Y + F+ +L A LG Q+ +VK GY +++VGS+ +++Y C
Sbjct: 44 YVDGYSFSRLLKGIASAKRFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFG 103
Query: 54 ---------GVTWNEMIHGYAENEYVEQAISLYKDI-IASGVKHDGVTFVAILT 97
V+WN +I G+ + + A L + + + V D TF +LT
Sbjct: 104 AFMEILEPNSVSWNALIAGFVQVRDTKTAFWLLGLMEMKAAVTMDDGTFAPLLT 157
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 19/114 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ +T ++S+C+ G+ + ++K G V +A I++Y
Sbjct: 252 YTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQVTSVSNALISMYIQFPTGVMKDALSLF 311
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN ++ G+++N E A+ ++ + +S ++ D F A+L CS
Sbjct: 312 ESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSAVLRSCS 365
>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
Length = 1033
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F +VLS C ++ L G+Q+ + G ++ V SA I++Y G
Sbjct: 452 PNEFALASVLSVCGSMALLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKI 511
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI+GYAE+ Y ++AISL+++I + G+ D VTF+ ILT C+H+GLV
Sbjct: 512 FDSIKNNDIVSWTAMINGYAEHGYSQEAISLFENISSVGLMPDYVTFIGILTACNHAGLV 571
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ M +++++ P C+ MP+ D VVW L+
Sbjct: 572 DLGFYYYKLMTNEYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNMPFPCDDVVWSTLLR 631
Query: 142 SCQVHSNVRLAKKAA 156
+C+ H ++ A AA
Sbjct: 632 ACRDHGDLDRAIWAA 646
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ F +V+S+CA L+ G QI ++ G + + V ++ I +Y CG
Sbjct: 349 VSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVDALSVSNSIITLYSKCGLLQEAS 408
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W+ +I Y + + ++A + + G K + ++L+ C
Sbjct: 409 LVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMA 468
Query: 104 LV 105
L+
Sbjct: 469 LL 470
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
QF + L +CA +++ G + VK G N +FV SA +++Y G
Sbjct: 151 QFVVSVALKACALGMNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFE 210
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
V+W +I G +S + ++ S V +D TF L + SGL++
Sbjct: 211 NMTTRNVVSWTAVIVGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLH 269
Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F L + A+ L G+ I + +K G+ +V + +Y C
Sbjct: 255 FAVALKASAESGLLHYGKAIHAQTIKQGFNETAYVVNTLGTMYSKCRKPDYVMRLFGKMS 314
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W +I Y + E+A+ +K + S V + TF ++++ C++
Sbjct: 315 TPDVVSWTNLIMTYVQMGDEERALDAFKRMRKSDVSPNEYTFASVISACAN 365
>gi|225457491|ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070
[Vitis vinifera]
gi|296087996|emb|CBI35279.3| unnamed protein product [Vitis vinifera]
Length = 598
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V +F T L++CA L+SL G++ +K G D+ V +A +++Y CG
Sbjct: 346 VRMNKFTLATALTACANLASLEEGKKAHGLRIKLGNDVDVCVDNALLDMYAKCGSMGDAL 405
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI G+A+N +A+ +++ + A G + +TF+ +L CS G
Sbjct: 406 KVFGTVEARSVVSWTTMIMGFAQNGQARKALEIFEQMRAEGKAPNYITFICVLYACSQGG 465
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L+ E F SM+ DH + P C+ MP++ ++VW L
Sbjct: 466 LINEGWEYFLSMDRDHGISPGEDHYACMVDMLGRAGHIKEARELIRRMPFQASVLVWQTL 525
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH +V AA
Sbjct: 526 LGACRVHGDVETGLLAA 542
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F+ VLS A L +G Q+ ++VK G+G ++ +G++ +++Y CG
Sbjct: 245 VKPDNFAFSGVLSGLAALGDGGMGVQVHGQLVKCGHGGEVCIGNSLVDMYLKCGSLENGI 304
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
TWN+M G +A+ L +++ SGV+ + T LT C++
Sbjct: 305 KAFEEMVERDVCTWNQMAAGCLNCGKPGRALELIEEMRRSGVRMNKFTLATALTACAN 362
Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ T+L A+ GR + +++K N +F+ + +N+Y CG
Sbjct: 38 YATLLRRFAETRDSQHGRALHAKLIKGPLHNSLFLNNHILNMYAKCGHLPHAHKLFDHFP 97
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W+ +I G+ ++ A+ L+ + A+GV + T V+ L CS
Sbjct: 98 HRNAVSWSVLIAGFVQHNRPSCALVLFSQMHAAGVNINEFTLVSALHACS 147
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 42/194 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + T LS+CA ++ G+ + I K G+ + V +A ++ Y CG
Sbjct: 267 PNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLV 326
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+W MI G A + Y E+AI L+ ++ SG++ DG+ F++IL CSH+GL
Sbjct: 327 FERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGL 386
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
+ E F M+ + ++P C+ MP ++W L+
Sbjct: 387 IEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLL 446
Query: 141 SSCQVHSNVRLAKK 154
+C +H NV+LA++
Sbjct: 447 GACSIHGNVKLAER 460
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ MI G+A N + +A ++++ G++ + V+ L+ C+ +G +
Sbjct: 235 VSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAI 285
Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 61/149 (40%), Gaps = 31/149 (20%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYA 65
F F +L + A SL G Q+ + + G +FVG+ +++Y CG
Sbjct: 107 FSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECG----------- 155
Query: 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKC 125
+V A +++++ V V + A++T C G V +FN
Sbjct: 156 ---FVAFAKKVFEEMFEPNV----VAWNAVVTACFRCGDVKGADMMFNR----------- 197
Query: 126 LMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154
MP++ +L W +++ + LA+K
Sbjct: 198 -MPFR-NLTSWNVMLAGYTKAGELELARK 224
>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 928
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV--------- 55
QF F+ LS+ AKL+ L G+Q+ VK G+ +D F+ +A ++Y CG
Sbjct: 548 QFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLP 607
Query: 56 --------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
+WN +I + Y E+ + + +++ G+K VTFV++LT CSH GLV
Sbjct: 608 PSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDK 667
Query: 108 EVEIFNSMEHDHEVKPK---CL---------------------MPYKDDLVVWGDLVSSC 143
+ ++ + D ++P C+ MP K + +VW L++SC
Sbjct: 668 GLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASC 727
Query: 144 QVHSNVRLAKKAA 156
++H N+ +KAA
Sbjct: 728 KIHGNLDRGRKAA 740
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
FT+ L++C GR + +V G + +G+A +++Y G
Sbjct: 348 FTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP 407
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V WN +I GYAE+E ++A++ ++ + GV + +T V++L+ C
Sbjct: 408 RRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSAC 456
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFL-GRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
+ P+ F +++++C + S+F G Q+ + K G +D++V +A +++Y G
Sbjct: 37 IKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCS 96
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+W ++ GY++ E+ I +YK + GV + + +++ C
Sbjct: 97 RKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSC 153
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 17/87 (19%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ V+SSC L LGRQI+ ++VK G + + V ++ I++ + G
Sbjct: 146 MSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMS 205
Query: 55 ----VTWNEMIHGYAENEYVEQAISLY 77
++WN + YA+N ++E++ ++
Sbjct: 206 ERDTISWNSIAAAYAQNGHIEESFRIF 232
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 100/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V T+ +++VL +CA +++L G QI + VK Y + VG+A I++Y CG
Sbjct: 444 VQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDAR 503
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY+ + +A+ ++ ++ + K D VTFV IL+ CS++G
Sbjct: 504 LVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAG 563
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L+ F SM +++++P C+ +P++ ++VW L
Sbjct: 564 LLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRAL 623
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C +H++V L + +A
Sbjct: 624 LSACVIHNDVELGRISA 640
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P QF ++L +CA L L LG QI +VK G ++FV +A +++Y CG
Sbjct: 343 VLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSL 402
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I GY + E+A+ L+KD++ V+ VT+ ++L C+
Sbjct: 403 QLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACA 459
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 24/125 (19%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F+TVL LG + + K G+ +D FVG+A I+ Y CG
Sbjct: 146 FVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDA 205
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+W M+ Y ENE E+++ L+ + G K + TF ++L C
Sbjct: 206 IEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKAC-------VG 258
Query: 109 VEIFN 113
+E+FN
Sbjct: 259 LEVFN 263
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F +VL +C L +G+ + K Y ++FVG I++Y G
Sbjct: 244 PNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQV 303
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ W+ MI YA++E E+AI ++ + V + T ++L C+
Sbjct: 304 FEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACA 358
>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g25970
gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 701
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 76/137 (55%), Gaps = 18/137 (13%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F+ +L SC+ L++L LG+QI K G+ ++ FV S+ I +Y CG
Sbjct: 409 YAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQ 468
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V WN MI GYA++ + ++ L+ + VK D VTF AILT CSH+GL+
Sbjct: 469 ISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQE 528
Query: 108 EVEIFNSMEHDHEVKPK 124
+E+ N ME ++++P+
Sbjct: 529 GLELLNLMEPVYKIQPR 545
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------------ 53
+ F+ +L A + LG Q+ ++K GY +++VGS+ +++Y C
Sbjct: 102 YSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKE 161
Query: 54 -----GVTWNEMIHGYAENEYVEQAISLYKDI-IASGVKHDGVTFVAILT 97
V+WN +I G+ + ++ A L + + + V D TF +LT
Sbjct: 162 ISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLT 211
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 23/119 (19%)
Query: 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------------VTWNEMIHGY 64
L +Q+ +++K G ++I + +A I+ Y +CG ++WN MI G+
Sbjct: 221 LLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGF 280
Query: 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP 123
+++E E A L+ + V+ D T+ +L+ CS E +IF H +K
Sbjct: 281 SKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGE-----EHQIFGKSLHGMVIKK 334
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ +T +LS+C+ G+ + ++K G +A I++Y
Sbjct: 306 YTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLF 365
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN +I G+A+ E A+ + + +S +K D F A+L CS
Sbjct: 366 ESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCS 419
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 15 CAKLSSLFLGRQILTRIVKDG---YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVE 71
C +S +++ +IL +K G Y N +F + V+WN MI GY +E
Sbjct: 29 CGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRD-----SVSWNTMISGYTSCGKLE 83
Query: 72 QAISLYKDIIASGVKHDGVTFVAIL 96
A L+ + SG DG +F +L
Sbjct: 84 DAWCLFTCMKRSGSDVDGYSFSRLL 108
>gi|357474431|ref|XP_003607500.1| hypothetical protein MTR_4g078750 [Medicago truncatula]
gi|355508555|gb|AES89697.1| hypothetical protein MTR_4g078750 [Medicago truncatula]
Length = 470
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 91/200 (45%), Gaps = 44/200 (22%)
Query: 1 VYPTQFPFTTVLSSCAKL---SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV-- 55
V P + + +VLSSC +L +L GRQ+ IV G +FVG++ IN+Y G
Sbjct: 218 VKPNEATYVSVLSSCTELEGKGALDFGRQVHGYIVVKGVDLGVFVGTSLINLYGKMGCLN 277
Query: 56 ---------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
TWN MI A N ++A+ L++ + G+K + +TFVA+LT C+
Sbjct: 278 YSASVFRVMVVREVCTWNAMISSLASNGREKEALDLFEKMKLQGLKPNSITFVAVLTACA 337
Query: 101 HSGLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVW 136
G V +E+F SM +V P C+ MP+ D V
Sbjct: 338 RGGFVSEGLELFESMSSKFQVVPVMEHYGCVVDLLGRAGHIQEAAEIIRNMPFPPDKTVL 397
Query: 137 GDLVSSCQVHSNVRLAKKAA 156
G + +C++H + L ++ A
Sbjct: 398 GAFLGACRIHGAIELGEEIA 417
>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
Length = 492
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +V+S+C+ L +L +G ++ + + D+ +G+A I++Y CG
Sbjct: 116 IIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQ 175
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW+ MI G A + +++SL+ +I+ G+K +GVTFV +L C+H G
Sbjct: 176 RVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVG 235
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F SM H ++P C+ M ++ D ++W L
Sbjct: 236 LVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRAL 295
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C++H NV +A++A
Sbjct: 296 LGACRIHKNVEIAEEA 311
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 35 GYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVA 94
G +IF G+ + + +W+ MI YA++ ++A+ L++++ A+ + D +T V+
Sbjct: 71 GLAREIFDGTEDRDAF-----SWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVS 125
Query: 95 ILTPCSHSGLVYAEVEIFNSMEHDH-EVKPKCLMPYKDDLVVWGDLVSSCQV 145
+++ CS G + E+ +E + E+ K D GD+ S+ +V
Sbjct: 126 VVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRV 177
>gi|147834193|emb|CAN75306.1| hypothetical protein VITISV_040403 [Vitis vinifera]
Length = 826
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F ++L +C+ + + LG I K GY ++ F+ SA I++YC G
Sbjct: 389 PNEITFVSLLQACSLIGAQELGESIQAHATKAGYLSNAFLSSALIDLYCKFGRINQGRAI 448
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V W+ MI+GY N ++A+ + +++A GVK + V F+++L+ CSH GL
Sbjct: 449 FNEIPTKDLVCWSSMINGYGLNGCGDEALETFSNMLACGVKPNEVVFISVLSACSHCGLE 508
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F+SME + + PK C+ MP + D +WG L++
Sbjct: 509 HEGWSCFSSMEQKYGIIPKLPHYACMVDLISRRGNIEGALQFVNKMPMEPDKRIWGALLA 568
Query: 142 SCQ-VHSNVRLAKKAA 156
C+ H ++ +A+ A
Sbjct: 569 GCRSTHGSIEIAELVA 584
>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39680-like [Glycine max]
Length = 703
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 42/194 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F F +L++CA L +L G + RIV G+ N + VG+A IN+Y G
Sbjct: 328 PNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNV 387
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TWN MI GY+ + +QA+ +++D++++G + VTF+ +L+ C H LV
Sbjct: 388 FSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALV 447
Query: 106 YAEVEIFNSMEHDHEVKP-------------------------KCLMPYKDDLVVWGDLV 140
F+ + +V+P K K D+V W L+
Sbjct: 448 QEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLL 507
Query: 141 SSCQVHSNVRLAKK 154
++C +H N L K+
Sbjct: 508 NACHIHRNYNLGKQ 521
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +VL CA++ L LG QI +++K G D+FV S I+ Y CG
Sbjct: 232 YVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLR 291
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V W ++ Y +N + E+ ++L+ + + + TF +L C+
Sbjct: 292 DRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACA 341
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YP ++ FT VLS CA + G+Q ++K G +V +A I++Y C
Sbjct: 125 YPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQ 184
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++N ++ E+ +A + K ++ V D VT+V++L C+
Sbjct: 185 ILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQ 241
>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 589
Score = 88.2 bits (217), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F VL++CA L+S+ G+QI +++ D+ V +A +N+Y CG
Sbjct: 300 VKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQYQDVGVSNALVNMYAKCGSIKNSY 359
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I + + +A+ ++ + G+ D VTFV +LT C+H+G
Sbjct: 360 DVFRRTSDRNLVSWNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLTACNHAG 419
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV FNSME + + P CL +P+ D ++ G L
Sbjct: 420 LVEEGQVYFNSMEEAYGIFPNIEHFSCLIDLLGRAGRLQEAEEYMEKLPFGHDPIILGSL 479
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H ++ + + A
Sbjct: 480 LSACRLHGDMVIGEHLA 496
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 39/182 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P ++ F +V+S+CA L++L G Q+ + +K G + FV +A I++Y CG
Sbjct: 97 IVPNEYVFASVISACASLTALSQGLQVHAQSLKLGCVSVSFVSNALISMYMKCGLCTDAL 156
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS--- 100
V++N +I G+ EN+ E+ I +K + G D TF +L C+
Sbjct: 157 LVHNVMSEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYD 216
Query: 101 --------HSGLVYAEVE-----------IFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
H ++ +E +++ E + + + DL+ W LV+
Sbjct: 217 DFWRGMQLHCQMIKLNLEDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVT 276
Query: 142 SC 143
+C
Sbjct: 277 AC 278
Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 20/108 (18%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++L CAK+ + G + +K G +DI V + IN+Y CG
Sbjct: 8 SLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDR 67
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W+ +I GY + A++L+ + + + F ++++ C+
Sbjct: 68 NLVSWSAIISGYDQTGQPLLALNLFSQM---RIVPNEYVFASVISACA 112
>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
Length = 652
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 49/195 (25%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F T+L +C+ L +L GR+I + + G+ D+ V +A +N Y CG
Sbjct: 278 PNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIV 337
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W+ MI +A+ V++A+ LY +++ G D + F+++L CS+SG+V
Sbjct: 338 FDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVV 397
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVS 141
A + F S+ D +V+P LMP+ +++ ++S
Sbjct: 398 EASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLS 457
Query: 142 SCQVHSNVRLAKKAA 156
+C+++++V + AA
Sbjct: 458 ACKLYTDVERGEAAA 472
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 41/193 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + +VL SCA L SL LG+ I + G V +A I +Y CG
Sbjct: 237 IEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLLKQTGVCNALIEMYSKCGMLSQAI 296
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W+ MI GYA + +A + ++ + VK +G+TF+ +L+ CSH G
Sbjct: 297 QLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEMQRAKVKPNGITFLGLLSACSHVG 356
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L ++ F+ M D++++PK CL MP K D +WG L
Sbjct: 357 LWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPVKPDSKIWGSL 416
Query: 140 VSSCQVHSNVRLA 152
+SSC+ N+ +A
Sbjct: 417 LSSCRTKGNLDVA 429
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 59/132 (44%), Gaps = 21/132 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P +F F + SCA L S +LG+Q+ + K G + +A I++Y
Sbjct: 106 FPDRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHK 165
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
++WN ++ GYA +++A L+ +I + V++ A+++ + G
Sbjct: 166 VFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTI----VSWTAMISGYTGIGC 221
Query: 105 VYAEVEIFNSME 116
++ F M+
Sbjct: 222 YVEAMDFFREMQ 233
>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 41/191 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F FT+++++CA ++L G+Q+ I + G ++ + +A I++Y CG
Sbjct: 312 PNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKN 371
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W M+ GY + Y ++A+ L+ +++ SG++ D V F+A+L CSH+GLV
Sbjct: 372 FSEMSCTNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGLV 431
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ N M +D+ +KP C+ MP+ D VWG L+
Sbjct: 432 DQGLRYINCMINDYHIKPNQEIYGCVVDLLGRPGRVEDAYQLIRSMPFMADESVWGALLG 491
Query: 142 SCQVHSNVRLA 152
+C+ H+ RL
Sbjct: 492 ACKAHNFSRLG 502
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 18/105 (17%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
+ + +CA + S GRQI T ++K G+ +D+ V ++ +++YC CG
Sbjct: 218 SIAVRACASIGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKYFNDMTE 277
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+TWN +I GY ++ +E ++ + + G + TF +++
Sbjct: 278 KDLITWNTLIAGYERSDSIE-PFFIFSQMESEGFSPNCFTFTSLV 321
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 25/123 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQI----LTRIVKDGYGNDIFVGSAPINIYCNCGV--- 55
P F ++VL +C + +F GR + + R +G+ I+V +A +++Y +CGV
Sbjct: 109 PNAFTISSVLKACKGMKRVFCGRLVHGLAIKRRFMEGF---IYVDNALMDMYASCGVGMR 165
Query: 56 ---------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+W +I GY +A+ ++++++ GV + + + C+
Sbjct: 166 DACVVFHDIKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPHSISIAVRACA 225
Query: 101 HSG 103
G
Sbjct: 226 SIG 228
>gi|9279602|dbj|BAB01060.1| unnamed protein product [Arabidopsis thaliana]
Length = 598
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 76/137 (55%), Gaps = 18/137 (13%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F+ +L SC+ L++L LG+QI K G+ ++ FV S+ I +Y CG
Sbjct: 306 YAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQ 365
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V WN MI GYA++ + ++ L+ + VK D VTF AILT CSH+GL+
Sbjct: 366 ISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQE 425
Query: 108 EVEIFNSMEHDHEVKPK 124
+E+ N ME ++++P+
Sbjct: 426 GLELLNLMEPVYKIQPR 442
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 18/96 (18%)
Query: 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------------VTWNEMIHGY 64
L +Q+ +++K G ++I + +A I+ Y +CG ++WN MI G+
Sbjct: 221 LLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGF 280
Query: 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
A+ E A+ + + +S +K D F A+L CS
Sbjct: 281 AQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCS 316
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------------ 53
+ F+ +L A + LG Q+ ++K GY +++VGS+ +++Y C
Sbjct: 102 YSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKE 161
Query: 54 -----GVTWNEMIHGYAENEYVEQAISLYKDI-IASGVKHDGVTFVAILT 97
V+WN +I G+ + ++ A L + + + V D TF +LT
Sbjct: 162 ISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLT 211
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 15 CAKLSSLFLGRQILTRIVKDG---YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVE 71
C +S +++ +IL +K G Y N +F + V+WN MI GY +E
Sbjct: 29 CGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRD-----SVSWNTMISGYTSCGKLE 83
Query: 72 QAISLYKDIIASGVKHDGVTFVAIL 96
A L+ + SG DG +F +L
Sbjct: 84 DAWCLFTCMKRSGSDVDGYSFSRLL 108
>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Glycine max]
Length = 777
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P TT+L +CA+L SL +G Q+ VK G D+ V + I++Y CG
Sbjct: 483 PDNITITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGLLKHARYV 542
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ +I GYA+ ++A++L++ + GV+ + VT++ +L+ CSH GLV
Sbjct: 543 FDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLV 602
Query: 106 YAEVEIFNSMEHDHEVKPK---------------CLMP---------YKDDLVVWGDLVS 141
++N+ME + + P CL + D+ +W L++
Sbjct: 603 EEGWHLYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKTGFDPDITMWKTLLA 662
Query: 142 SCQVHSNVRLAKKAA 156
SC+ H NV +A++AA
Sbjct: 663 SCKTHGNVDIAERAA 677
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 18/114 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F F +V S+C L GRQI K G G ++F G + ++Y G
Sbjct: 281 PNEFIFGSVFSACRSLLKPEFGRQIQGMCAKFGLGRNVFAGCSLCDMYAKFGFLPSAKRA 340
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN +I A N V +AI + +I G+ D +TF+ +L C
Sbjct: 341 FYQIESPDLVSWNAIIAALA-NSDVNEAIYFFCQMIHMGLMPDDITFLNLLCAC 393
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 17/113 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ ++ +C + SL G++I I+K D+ + + +N+Y CG
Sbjct: 83 YVNLILACTNVRSLKYGKRIHDHILKSNCQPDLVLQNHILNMYGKCGSLKDARKAFDTMQ 142
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI GY++N AI +Y ++ SG D +TF +I+ C +G
Sbjct: 143 LRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSIIKACCIAG 195
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P Q F +++ +C + LG Q+ ++K GY + + +A I++Y G
Sbjct: 178 FPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASD 237
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGV-KHDGVTFVAILTPC 99
++W MI G+ + Y +A+ L++D+ GV + + F ++ + C
Sbjct: 238 VFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSAC 293
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 20/127 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F +L +C +L G QI + I+K G V ++ + +Y C
Sbjct: 379 LMPDDITFLNLLCACGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLTMYTKCSNLHDAF 438
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN ++ ++++ +A L+K ++ S K D +T IL C+
Sbjct: 439 NVFKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDNITITTILGTCAE- 497
Query: 103 GLVYAEV 109
LV EV
Sbjct: 498 -LVSLEV 503
>gi|125582503|gb|EAZ23434.1| hypothetical protein OsJ_07125 [Oryza sativa Japonica Group]
Length = 596
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 48/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND---IFVGSAPINIYCNCG--- 54
V PT F + L +CAK+ + G+++ I++ G+D +F+ +A I++Y CG
Sbjct: 298 VVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMV 357
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN M+ G++ N +Q++++++ ++ V+ VTF+A+LT CS
Sbjct: 358 AAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACS 417
Query: 101 HSGLVYAEVEIFNSMEHDHEVKPKC--LMPYKDDL------------------------- 133
H+GLV I SM+ DH V+P+ + D L
Sbjct: 418 HAGLVSDGRRILESMQ-DHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTT 476
Query: 134 VVWGDLVSSCQVHSNVRLAKKAA 156
WG L+ +C VH N+ +A++ A
Sbjct: 477 GSWGALLGACHVHGNIEIAEEVA 499
>gi|125539877|gb|EAY86272.1| hypothetical protein OsI_07642 [Oryza sativa Indica Group]
Length = 596
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 48/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND---IFVGSAPINIYCNCG--- 54
V PT F + L +CAK+ + G+++ I++ G+D +F+ +A I++Y CG
Sbjct: 298 VVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMV 357
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN M+ G++ N +Q++++++ ++ V+ VTF+A+LT CS
Sbjct: 358 AAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACS 417
Query: 101 HSGLVYAEVEIFNSMEHDHEVKPKC--LMPYKDDL------------------------- 133
H+GLV I SM+ DH V+P+ + D L
Sbjct: 418 HAGLVSDGRRILESMQ-DHGVEPRAEHYAAFIDALGRNHQLEEASEFIKGLSSKIGLGTT 476
Query: 134 VVWGDLVSSCQVHSNVRLAKKAA 156
WG L+ +C VH N+ +A++ A
Sbjct: 477 GSWGALLGACHVHGNIEIAEEVA 499
>gi|115446683|ref|NP_001047121.1| Os02g0555100 [Oryza sativa Japonica Group]
gi|113536652|dbj|BAF09035.1| Os02g0555100 [Oryza sativa Japonica Group]
Length = 596
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 48/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND---IFVGSAPINIYCNCG--- 54
V PT F + L +CAK+ + G+++ I++ G+D +F+ +A I++Y CG
Sbjct: 298 VVPTPFALVSCLGACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMV 357
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN M+ G++ N +Q++++++ ++ V+ VTF+A+LT CS
Sbjct: 358 AAMAVFDRMLERDIISWNSMVTGFSHNGQGKQSLAVFERMLKDEVQPTYVTFLAVLTACS 417
Query: 101 HSGLVYAEVEIFNSMEHDHEVKPKC--LMPYKDDL------------------------- 133
H+GLV I SM+ DH V+P+ + D L
Sbjct: 418 HAGLVSDGRRILESMQ-DHGVEPRAEHYAAFIDALGRNRQLEEASEFIKGLSSKIGLGTT 476
Query: 134 VVWGDLVSSCQVHSNVRLAKKAA 156
WG L+ +C VH N+ +A++ A
Sbjct: 477 GSWGALLGACHVHGNIEIAEEVA 499
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 97/198 (48%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKD-GYGNDIFVGSAPINIYCNCGV---- 55
+ P+ +VL +CA L +L +GR + + + + G D + +A I+++ CG
Sbjct: 216 IEPSDSCVMSVLCACANLGALDVGRWVYSYVCQSKGDYVDSRIATALIDMFFKCGSIEHA 275
Query: 56 -------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
W M+ G A + EQ I ++ ++ SGVK +GVTFVA+L+ CSHS
Sbjct: 276 LLVFEGAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVDSGVKPNGVTFVALLSGCSHS 335
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV + F+ ME D V+P C+ MP++ + +WG
Sbjct: 336 GLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLIDQAMQLISEMPFEPNAAIWGS 395
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+++C+V+ NV + + AA
Sbjct: 396 LLNACRVYKNVEIGELAA 413
>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
Length = 1027
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV--------- 55
QF F+ LS+ AKL+ L G+Q+ VK G+ +D F+ +A ++Y CG
Sbjct: 655 QFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLP 714
Query: 56 --------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
+WN +I + Y E+ + + +++ G+K VTFV++LT CSH GLV
Sbjct: 715 PSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDK 774
Query: 108 EVEIFNSMEHDHEVKPK---CL---------------------MPYKDDLVVWGDLVSSC 143
+ ++ + D ++P C+ MP K + +VW L++SC
Sbjct: 775 GLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASC 834
Query: 144 QVHSNVRLAKKAA 156
++H N+ +KAA
Sbjct: 835 KIHGNLDRGRKAA 847
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
FT+ L++C GR + +V G + +G+A +++Y G
Sbjct: 455 FTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP 514
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V WN +I GYAE+E ++A++ ++ + GV + +T V++L+ C
Sbjct: 515 RRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSAC 563
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 18/97 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFL-GRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
+ P+ F +++++C + S+F G Q+ + K G +D++V +A +++Y G
Sbjct: 169 IKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCS 228
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKD 79
V+W ++ GY++ E+ I +YKD
Sbjct: 229 RKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKD 265
>gi|357131197|ref|XP_003567226.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Brachypodium distachyon]
Length = 648
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 43/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLS--SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---- 54
V P +VLSSCA L S+ LG + R G+ ++ + +A IN Y CG
Sbjct: 268 VEPDAVTLVSVLSSCAHLGARSVGLGVERYMRGKLPGFRTNVQLCNALINFYARCGCLPQ 327
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W +I GY + + E AI+L++ +++ G++ D V V +L+ CSH
Sbjct: 328 AQQLFNEMPRKSIVSWTALITGYGMHGHGEVAINLFQTMVSEGIRPDNVAMVGLLSACSH 387
Query: 102 SGLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWG 137
+G+ + F++ME ++++P C+ MP D VWG
Sbjct: 388 AGMYDEGRKYFSAMESAYQLRPTLEHYTCMVDLLGRAGRLKEARELISSMPMPADGAVWG 447
Query: 138 DLVSSCQVHSNVRLAKKA 155
L+ +C++H NV + ++A
Sbjct: 448 ALLGACKIHKNVEIGEEA 465
Score = 37.4 bits (85), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIA---SGVKHDGVTFVAILTPCSHSG 103
V+WN ++ +++N A+ LY + GV+ D VT V++L+ C+H G
Sbjct: 235 VSWNAVLSAHSQNGLAVDALDLYSRMRGCDGHGVEPDAVTLVSVLSSCAHLG 286
>gi|359493563|ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g71420-like [Vitis vinifera]
Length = 741
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 94/195 (48%), Gaps = 44/195 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F+ VL +CA L++ + + ++K G+ +DI + +A I+ CG
Sbjct: 366 PDRHMFSIVLKACAGLATERHALTVQSHVLKVGFEDDIVLANALIHACARCGSVALSKQV 425
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN M+ YA + ++A+ L+ + A + DG TFVA+L+ CSH+G+
Sbjct: 426 FDKMGSRDTVSWNSMLKAYAMHGQGKEALLLFSQMDA---QPDGATFVALLSACSHAGMA 482
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+IF +M ++H + P+ C+ MP + D VVW L+
Sbjct: 483 EEGAKIFETMSNNHGIVPQLDHYACMVDILGRAGQISEAKELIDKMPMEPDSVVWSALLG 542
Query: 142 SCQVHSNVRLAKKAA 156
SC+ H +LAK AA
Sbjct: 543 SCRKHGETKLAKLAA 557
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 20/113 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC-NCG------- 54
PT+F F +V+S+C + GRQ+ +K + + ++VG+A I +YC +CG
Sbjct: 163 PTEFAFASVISACGGDDNC--GRQVHALALKTSFDSCVYVGNALIMMYCKSCGGADEAWN 220
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI G+ +A+ L+ + G++ D T V+I +
Sbjct: 221 VYEAMGFRNLVSWNSMIAGFQVCGCGNRALELFSQMHVGGIRFDRATLVSIFS 273
>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Glycine max]
Length = 782
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + ++SC+ L SL G+Q+ ++I++ G+ + + VG+A I +Y CG
Sbjct: 408 PCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTV 467
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI A++ + QAI LY+ ++ + D +TF+ IL+ CSH+GLV
Sbjct: 468 FLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLV 527
Query: 106 YAEVEIFNSM--------EHDHEVKPKCL----------------MPYKDDLVVWGDLVS 141
F++M E DH + L MP++ +W L++
Sbjct: 528 KEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLA 587
Query: 142 SCQVHSNVRLAKKAA 156
C +H N+ L +AA
Sbjct: 588 GCWIHGNMELGIQAA 602
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 79/169 (46%), Gaps = 30/169 (17%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQI---LTRIVKDGYGNDIF-VGSAPINIYCNCG------ 54
++ +T+V+S+ + +GRQ+ + R V G+ + V +A I +Y CG
Sbjct: 274 EYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEAR 333
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN ++ G +E+A S+++++ + +T+ +++ + +G
Sbjct: 334 RVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSL----LTWTVMISGLAQNG 389
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV---VWGDLVSSCQVHSNV 149
+++FN M+ + ++P C Y + V G L + Q+HS +
Sbjct: 390 FGEEGLKLFNQMKLE-GLEP-CDYAYAGAIASCSVLGSLDNGQQLHSQI 436
Score = 40.4 bits (93), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 29 TRIVKDGYGNDIFVGSAPI--NIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86
T I+ ND V + + + + V WN MI GY + E+A L + + + G++
Sbjct: 212 TTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQ 271
Query: 87 HDGVTFVAILTPCSHSGL 104
D T+ ++++ S++GL
Sbjct: 272 LDEYTYTSVISAASNAGL 289
>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g28640-like [Vitis vinifera]
Length = 511
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 43/199 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCG----- 54
V P +F TT L CA+L +L G+ I + K + D+F+G+A +++Y CG
Sbjct: 203 VEPDEFCLTTALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRS 262
Query: 55 ------------VTWNEMIHGYAENEYVEQAIS-LYKDIIASGVKHDGVTFVAILTPCSH 101
+W+ MI G+A + +V +A+ L + + G++ DGV + ++ C+H
Sbjct: 263 VEVFEGMTKRNVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLRPDGVVLLGVIMACAH 322
Query: 102 SGLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWG 137
+GL + +ME + + PK C+ MP K VWG
Sbjct: 323 AGLQEEGQFLLENMEARYGILPKHEHYSCMVDLLCRAGQLDEALKLIRRMPMKPRAAVWG 382
Query: 138 DLVSSCQVHSNVRLAKKAA 156
L+S C+ H+NV LA+ AA
Sbjct: 383 ALLSGCRTHNNVDLAELAA 401
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 18/121 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG----- 54
V P Q F ++S+C + LG+QI ++K+G + D V +A + Y C
Sbjct: 101 VGPDQHTFPFIISACTNSLWMLLGKQIHNWVLKNGVASSDRHVQTALVRFYAECCAMGDA 160
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V WN +++GY +A++ +++++ SGV+ D L C+
Sbjct: 161 RKLFDEIPNLDVVQWNVLLNGYVRRGLAPEALNAFRNMLVSGVEPDEFCLTTALKGCAQL 220
Query: 103 G 103
G
Sbjct: 221 G 221
>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Brachypodium distachyon]
Length = 689
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F ++VL++CA L L GR + V+ +IFV SA +++Y CG
Sbjct: 314 PTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQV 373
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSHSGL 104
VTWN MI GYA + A++++ +I S G + +T V ++T CS GL
Sbjct: 374 FLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGL 433
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
E+F++M V+P+ C+ MP + + VWG L+
Sbjct: 434 TKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALL 493
Query: 141 SSCQVHSNVRLAKKAA 156
+C++H L + A+
Sbjct: 494 GACKMHGKTELGRIAS 509
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 17/106 (16%)
Query: 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY--CNCG--------------- 54
++CA L LG Q +V G+ D+ V +A ++ Y C C
Sbjct: 222 FNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNS 281
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W MI YA++ E A+++Y +G + ++LT C+
Sbjct: 282 VSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCA 327
>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 937
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 93/193 (48%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV--------- 55
QF F+ LS+ AKL+ L G+Q+ VK G+ +D F+ +A ++Y CG
Sbjct: 565 QFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLP 624
Query: 56 --------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
+WN +I + Y E+ + + +++ G+K VTFV++LT CSH GLV
Sbjct: 625 PSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDK 684
Query: 108 EVEIFNSMEHDHEVKPK---CL---------------------MPYKDDLVVWGDLVSSC 143
+ ++ + D ++P C+ MP K + +VW L++SC
Sbjct: 685 GLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASC 744
Query: 144 QVHSNVRLAKKAA 156
++H N+ +KAA
Sbjct: 745 KIHGNLDRGRKAA 757
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
FT+ L++C GR + +V G + +G+A +++Y G
Sbjct: 365 FTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP 424
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V WN +I GYAE+E ++A++ ++ + GV + +T V++L+ C
Sbjct: 425 RRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSAC 473
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFL-GRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
+ P+ F +++++C + S+F G Q+ + K G +D++V +A +++Y G
Sbjct: 54 IKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCS 113
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+W ++ GY++ E+ I +YK + GV + + +++ C
Sbjct: 114 RKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSC 170
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 17/87 (19%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ V+SSC L LGRQI+ ++VK G + + V ++ I++ + G
Sbjct: 163 MSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMS 222
Query: 55 ----VTWNEMIHGYAENEYVEQAISLY 77
++WN + YA+N ++E++ ++
Sbjct: 223 ERDTISWNSIAAAYAQNGHIEESFRIF 249
>gi|414584791|tpg|DAA35362.1| TPA: hypothetical protein ZEAMMB73_898339 [Zea mays]
Length = 605
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F T ++CA L+ L GR++ ++K G +D+ V +A I++Y CG
Sbjct: 347 VMPNNYTFATSANACASLTDLDEGRKVHGYVIKLGDDSDVGVNNALIDMYAKCGSVACAH 406
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI +A N +A+ ++ D++ GV + VT V +L CS G
Sbjct: 407 KVFQSMQQRPVISWTAMIMAFAHNGRAREAVEVFDDMLLRGVAPNRVTLVCVLYACSQGG 466
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
V FN+M+ ++P C+ MP++ ++VW L
Sbjct: 467 FVDEGWIYFNAMKDKFGIQPGEDHYACMVDLLGKAGQIEEAEELISGMPFRPGVLVWQAL 526
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C +H N + ++AA
Sbjct: 527 LGACHLHGNEAVGRRAA 543
Score = 42.0 bits (97), Expect = 0.085, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 17/112 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY--------------- 50
F F+T+LS A +SL G Q+ ++VK G+ +D+ VG++ + +Y
Sbjct: 251 FSFSTILSGLAVTASLAGGLQVHAQLVKSGFCDDVCVGNSLVEMYMKSKCLADGVMAFAE 310
Query: 51 --CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
C V+W + G +AI + ++ GV + TF C+
Sbjct: 311 IRCKDVVSWTGLAAGCLHCGEPAKAIGILGQMMLDGVMPNNYTFATSANACA 362
>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 821
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V +++ CA L SL GR + ++ GY D + SA I++Y CG
Sbjct: 444 VAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAE 503
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+ N MI GY + + A+ +Y +I +K + TFV++LT CSHS
Sbjct: 504 KLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHS 563
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV +F+SME DH+V+P+ CL MP++ V
Sbjct: 564 GLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEA 623
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+S C+ H N + + A
Sbjct: 624 LLSGCRTHKNTNMGIQIA 641
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 17/117 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ +L +C + +G + ++ G GND+FV ++ +++Y N G
Sbjct: 244 PSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALV 303
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
++WN MI GY +N + ++ +L++ ++ SG D T V+++ CS +
Sbjct: 304 FDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQT 360
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------- 54
L +C L +G +I+ V+ G+ ++VGS+ +N G
Sbjct: 152 LKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDV 211
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V WN +I GY + ++I ++ ++I G++ VT +L C SGL
Sbjct: 212 VCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGL 261
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 54/113 (47%), Gaps = 17/113 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+++ C++ S L GR + + I++ + + + +A +++Y CG
Sbjct: 350 LVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMG 409
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TW M+ G ++N Y E A+ L+ + V + VT V+++ C+H G
Sbjct: 410 KKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLG 462
>gi|357484133|ref|XP_003612353.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513688|gb|AES95311.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 795
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 38/191 (19%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
T + +S+C++L ++ G+Q+ +K GY D+++GS+ I++Y CG
Sbjct: 553 TSYSLPLCISACSQLLTISEGKQLHVFAIKSGYSCDVYIGSSIIDMYAKCGNIEESEKVF 612
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
VT+N +I GYA + +QAI + + +GV + VTF+A+++ CSH+G V
Sbjct: 613 DEQLKPNEVTFNAIISGYAHHGKAQQAIEVLSKLEKNGVAPNHVTFLALMSACSHAGYVE 672
Query: 107 AEVEIFNSMEHDHEVKPK-----CLMP---------------YKD-DLVVWGDLVSSCQV 145
+F M +++KPK CL+ KD W L+S+C+
Sbjct: 673 ETSHLFTLMLDKYKIKPKSEHYSCLVDAYGRAGRLEEAYQIVQKDGSESAWRTLLSACRN 732
Query: 146 HSNVRLAKKAA 156
HSN ++ +K+A
Sbjct: 733 HSNRKIGEKSA 743
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 19/117 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F +L +C +G QI +V+ G + F GS+ + +Y G
Sbjct: 147 PNENTFAVLLRACTNRELWSVGLQIHGLLVRCGLEREKFAGSSLVYMYLKGGDDLRDALR 206
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDII-ASGVKHDGVTFVAILTPCS 100
V WN MI G+A+N L+ ++ G+K D +TF ++L CS
Sbjct: 207 VFYGLLERDVVAWNVMISGFAQNGDFRMVQRLFSEMWEEQGLKPDRITFASLLKCCS 263
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P + F ++L C+ L+ + QI + K G D+ V SA +++Y C
Sbjct: 250 PDRITFASLLKCCSVLNEVM---QIHGIVYKFGAEVDVVVESAMVDLYAKCRDVSSCRKI 306
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
W+ MI GY N E+A++ +KD+ VK D + L C
Sbjct: 307 FDSMEKKDNFVWSSMISGYTMNNRGEEAVNFFKDMCRQRVKLDQHVLSSTLKAC 360
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q ++ L +C ++ L G Q+ ++K+G+ ND FV S +N+Y + G
Sbjct: 350 QHVLSSTLKACVEIEDLNTGVQVHGLMIKNGHQNDCFVASVLLNLYASFGELGDVEKLFS 409
Query: 55 -------VTWNEMIHGYAE-NEYVEQAISLYKDIIASG-VKHDGVTFVAILTPC 99
V WN MI A + + + L++++ + ++ G T VA+L C
Sbjct: 410 RIDDKDIVAWNSMILAQARPGQGCGRCMQLFQELRRTTFLQIQGATLVAVLKSC 463
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-------------- 53
VL SC K S L GRQI + IVK VG+A +++Y C
Sbjct: 456 LVAVLKSCEKDSDLPAGRQIHSLIVKSSLCRHTLVGNALVHMYSECKQIDDAFKAFVDIV 515
Query: 54 ---GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+W+ +I +N +A+ L K+++ G+ + ++ CS
Sbjct: 516 RKDDSSWSSIIGTCKQNRMESKALELCKEMLDEGINFTSYSLPLCISACSQ 566
>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g68930-like [Cucumis
sativus]
Length = 695
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + ++V+SSCAKL+SL G+ + + + G N++ V SA I++Y CG
Sbjct: 318 IEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDAR 377
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI G A+N + + A+ L+++++ K D VTF+ IL+ C H
Sbjct: 378 SVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCN 437
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+ E F+S+ + H + P C+ M + D ++W L
Sbjct: 438 WIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTL 497
Query: 140 VSSCQVHSNVRLAKKAA 156
+S C ++ A+ AA
Sbjct: 498 LSICSTKGDIVNAEVAA 514
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT++ ++L++ A+L L G+QI I+ + ++F+ +A ++Y CG
Sbjct: 153 PTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWL 212
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI GYA+N E+ I L + SG D VT I+ G V
Sbjct: 213 FDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRV 272
Query: 106 YAEVEIFNSME 116
+F+ +
Sbjct: 273 DEARRVFSEFK 283
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 27 ILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEY 69
+L ++ G+ D S I YC CG V W M+ GYA+N
Sbjct: 243 LLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGR 302
Query: 70 VEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
E A+ L+ +++ ++ D T ++++ C+
Sbjct: 303 EEDALLLFNEMLLEHIEPDSYTLSSVVSSCA 333
>gi|396582353|gb|AFN88216.1| pentatricopeptide repeat-containing protein [Phaseolus vulgaris]
Length = 499
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++L SC+ + S + RQ+ ++ +++VG+A ++ Y G
Sbjct: 195 VTPNAVTLASILPSCSSMGSTAIARQLHGFSIRQLLDENVYVGTALVDAYSKLGAISYAE 254
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VT+ MI Y ++ ++A++LY ++ SG+K D VTF+AIL+ CS+SG
Sbjct: 255 NVFIRTLAKNSVTYTTMIMSYGQHGMGKRALALYDSMLRSGIKPDAVTFIAILSACSYSG 314
Query: 104 LVYAEVEIFNSMEHDHEVKP----------------KCLMPYK---------DDLVVWGD 138
LV + IF SM+ H++KP + + Y+ D + +WG
Sbjct: 315 LVEEGLHIFESMDKIHKIKPSTEHYCCVADMLGRVGRVVEAYEFVERLGEDGDAVEIWGS 374
Query: 139 LVSSCQVHSNVRLAKKAA 156
++ +C+ H L K A
Sbjct: 375 ILGACKNHGYFELGKVVA 392
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 24/116 (20%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVG--SAPINIYCNCGV----------- 55
T +LS+ + + ++GRQ +++ G F G S I++Y G+
Sbjct: 101 TALLSAASNMRDSYIGRQTHAYLIRHGIQ---FEGMESYLIDMYAKSGLITTSELLFEQN 157
Query: 56 --------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI GY +N ++AI + ++ + V + VT +IL CS G
Sbjct: 158 GPSDRDLASWNAMIAGYTQNGLSDKAILILREALVRKVTPNAVTLASILPSCSSMG 213
>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++ F VL++CA L++ LG+Q+ + + G+ F S+ +++Y CG
Sbjct: 317 PNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHV 376
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W +I G A+N ++A+ + ++ SG K D VTFV +L+ C+H+GLV
Sbjct: 377 VDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLV 436
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+E F S+ H + CL MP K +W ++
Sbjct: 437 EKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLG 496
Query: 142 SCQVHSNVRLAKKAA 156
C + N+ LA++AA
Sbjct: 497 GCSTYGNIDLAEEAA 511
Score = 40.0 bits (92), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAE 66
G++I IV+ G +D + S+ +++Y CG V+W MI Y +
Sbjct: 237 GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFK 296
Query: 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ + SL+ +++ S + + TF +L C+
Sbjct: 297 SSRWREGFSLFSELVGSCERPNEYTFAGVLNACA 330
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 21/112 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + ++ C++ +L G+++ I G+ I + + + +Y CG
Sbjct: 83 PPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKV 142
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
+WN M++GYAE +E+A L+ ++ + D ++ A++T
Sbjct: 143 FDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEM----TEKDSYSWTAMVT 190
>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g14050, mitochondrial; Flags: Precursor
gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
++++ +CA L++ GRQ+ ++ G+ + +F+ +A I++Y C
Sbjct: 241 LSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMR 300
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+W +I G A++ E+A++LY D+++ GVK + VTFV ++ CSH G V E
Sbjct: 301 HRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRE 360
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
+F SM D+ ++P CL MP+ D W L+S+C+
Sbjct: 361 LFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQ 420
Query: 147 SNVRLAKKAA 156
++ + A
Sbjct: 421 GRGQMGIRIA 430
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 21/136 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F F+ ++ +CA L S+ GRQ+ + Y ND V S+ +++Y CG
Sbjct: 101 LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAK 160
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W M+ GYA++ E+A+ L++ + + ++ A+++ SG
Sbjct: 161 AVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNL----YSWTALISGFVQSG 216
Query: 104 LVYAEVEIFNSMEHDH 119
+F M +
Sbjct: 217 KGLEAFSVFTEMRRER 232
>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g27610-like [Cucumis sativus]
Length = 878
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAK-LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
V P ++ F++V+++C+ +++ G+QI VK G N + V SA + +Y G
Sbjct: 501 VKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESA 560
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN MI GY ++ ++A+ +++ + G+ D VTF+ +LT C+H+
Sbjct: 561 EKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHA 620
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV + FN M D+ + K C+ MP+ +W
Sbjct: 621 GLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRT 680
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+++C+VH N+ L K AA
Sbjct: 681 LLAACRVHRNLELGKLAA 698
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P F F TVL + A S + G Q+ IVK+G+ FV +A I +Y
Sbjct: 201 VNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAE 260
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTWN MI GYA + + ++ + +GVK F L CS
Sbjct: 261 AVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQ 318
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ L C L +GRQ+ + +K G+ D+ VG++ +++Y
Sbjct: 105 LTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDE 164
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+W ++ GYA N ++ I L + GV +G TF +L + ++
Sbjct: 165 MGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGG 224
Query: 109 VEI 111
V++
Sbjct: 225 VQV 227
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 21/120 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F ++TVL+ K SSL Q+ +I+K Y V +A ++ Y G
Sbjct: 404 VRPNHFTYSTVLA--GKPSSLL--SQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESA 459
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ M+ G A+ E+A+ ++ ++ GVK + TF +++ CS S
Sbjct: 460 RVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSA 519
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 21/156 (13%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F T L C++ L +Q+ +VK+GY + +A + Y C
Sbjct: 309 FCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMAD 368
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEV 109
VTW MI G+ +N ++A+ L+ + GV+ + T+ +L S L
Sbjct: 369 AAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHA 428
Query: 110 EIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV 145
+I + +E P D V G++V S +V
Sbjct: 429 QIIKAY---YEKVPSVATALLDAYVKTGNVVESARV 461
>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 878
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAK-LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
V P ++ F++V+++C+ +++ G+QI VK G N + V SA + +Y G
Sbjct: 501 VKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESA 560
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN MI GY ++ ++A+ +++ + G+ D VTF+ +LT C+H+
Sbjct: 561 EKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHA 620
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
GLV + FN M D+ + K C+ MP+ +W
Sbjct: 621 GLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRT 680
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+++C+VH N+ L K AA
Sbjct: 681 LLAACRVHRNLELGKLAA 698
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V P F F TVL + A S + G Q+ IVK+G+ FV +A I +Y
Sbjct: 201 VNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAE 260
Query: 54 ----------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTWN MI GYA + + ++ + +GVK F L CS
Sbjct: 261 AVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQ 318
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 17/123 (13%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ L C L +GRQ+ + +K G+ D+ VG++ +++Y
Sbjct: 105 LTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDE 164
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+W ++ GYA N ++ I L + GV +G TF +L + ++
Sbjct: 165 MGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGG 224
Query: 109 VEI 111
V++
Sbjct: 225 VQV 227
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 21/120 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F ++TVL+ K SSL Q+ +I+K Y V +A ++ Y G
Sbjct: 404 VRPNHFTYSTVLA--GKPSSLL--SQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESA 459
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ M+ G A+ E+A+ ++ ++ GVK + TF +++ CS S
Sbjct: 460 RVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSA 519
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 21/156 (13%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F T L C++ L +Q+ +VK+GY + +A + Y C
Sbjct: 309 FCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMAD 368
Query: 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEV 109
VTW MI G+ +N E+A+ L+ + GV+ + T+ +L S L
Sbjct: 369 AAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHA 428
Query: 110 EIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV 145
+I + +E P D V G++V S +V
Sbjct: 429 QIIKAY---YEKVPSVATALLDAYVKTGNVVESARV 461
>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g40720-like [Vitis vinifera]
Length = 854
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 43/194 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY--GNDIFVGSAPINIYCNCG------ 54
P VLSS L++L G+ + + + G+ G D+ + +A I +Y CG
Sbjct: 556 PNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAE 615
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GY N A+ + ++ G + +GVTFV++L+ CSHSG
Sbjct: 616 NIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSG 675
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDL 139
+ +++F+SM D V P+ + MP + D VW L
Sbjct: 676 FIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRAL 735
Query: 140 VSSCQVHSNVRLAK 153
+SSC+ +S+ + AK
Sbjct: 736 LSSCRAYSDAKQAK 749
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 19/113 (16%)
Query: 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV---------------- 55
+ +CA+L SL LG+QI +K + D+++ +A +N+Y N G
Sbjct: 262 VQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDA 321
Query: 56 -TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH--SGLV 105
WN MI YA E+A+ L+ + + GVK D T V +L+ C SGL+
Sbjct: 322 PLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLL 374
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P VL +CA +++ G+ I I +D+ VG+A ++ YC CG
Sbjct: 49 VLPNNTTLPLVLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDAR 108
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V WN M++GY E+A+ L +++ ++ + T VA+L C
Sbjct: 109 CVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLAC 164
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + ++L++C ++ L GR I ++K + + +A ++Y NCG
Sbjct: 454 IKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATAR 513
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
++WN MI Y +N +A+ L+ +I S + + VT + +L+ +H
Sbjct: 514 DLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMI-SEAEPNSVTIINVLSSFTH 570
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 11 VLSSCAKLSS-LFLGRQILTRIVKDGYGNDIFVGSAPINIYC--NCG------------- 54
+LS C +L+S L G+ + ++K G D +G+A +++Y NC
Sbjct: 362 MLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGV 421
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++WN MI A N QA L++ + S +K + T ++IL C
Sbjct: 422 DIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAAC 468
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG----- 54
+ P +L +C S L LGR + +++G + ++ V +A I Y
Sbjct: 150 LRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLP 209
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY + +A+ L+ ++ VK D VT + + C+ G
Sbjct: 210 LLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELG 269
>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
Length = 841
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 89/194 (45%), Gaps = 43/194 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY--GNDIFVGSAPINIYCNCG------ 54
P VLSS L++L G+ + + + G+ G D+ + +A I +Y CG
Sbjct: 543 PNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAE 602
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++WN MI GY N A+ + ++ G + +GVTFV++L+ CSHSG
Sbjct: 603 NIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSG 662
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDL 139
+ +++F+SM D V P+ + MP + D VW L
Sbjct: 663 FIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRAL 722
Query: 140 VSSCQVHSNVRLAK 153
+SSC+ +S+ + AK
Sbjct: 723 LSSCRAYSDAKQAK 736
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 19/113 (16%)
Query: 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV---------------- 55
+ +CA+L SL LG+QI +K + D+++ +A +N+Y N G
Sbjct: 269 VQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDA 328
Query: 56 -TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH--SGLV 105
WN MI YA E+A+ L+ + + GVK D T V +L+ C SGL+
Sbjct: 329 PLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLL 381
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P VL +CA +++ G+ I I +D+ VG+A ++ YC CG
Sbjct: 56 VLPNNTTLPLVLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDAR 115
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V WN M++GY E+A+ L +++ ++ + T VA+L C
Sbjct: 116 CVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLAC 171
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 11 VLSSCAKLSS-LFLGRQILTRIVKDGYGNDIFVGSAPINIYC--NCG------------- 54
+LS C +L+S L G+ + ++K G D +G+A +++Y NC
Sbjct: 369 MLSMCEELASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGV 428
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++WN MI A N QA L++ + S +K + T ++IL C
Sbjct: 429 DIISWNTMILALARNTLRAQACELFERMRESEIKPNSYTIISILAAC 475
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG----- 54
+ P +L +C S L LGR + +++G + ++ V +A I Y
Sbjct: 157 LRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLP 216
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI GY + +A+ L+ ++ VK D VT + + C+ G
Sbjct: 217 LLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELG 276
>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g14850-like [Cucumis sativus]
Length = 606
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT F ++VL +CA LS + GR + VK +IFV SA +++Y CG
Sbjct: 306 IEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAE 365
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDII-ASGVKHDGVTFVAILTPCSHS 102
V+WN ++ GYA + +A++L +++ A+G+ V+ + L+ CS +
Sbjct: 366 QAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRA 425
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
G + ++IF SM+ + V+P CL MP+ + +WG
Sbjct: 426 GDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGA 485
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C++H L K AA
Sbjct: 486 LLGACRMHGKPELGKLAA 503
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P F F VL + L G+Q+ VK+G ND+FVG + ++Y G
Sbjct: 104 VRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAY 163
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
TWN I + E ++ + +++ G K D +TF L CS
Sbjct: 164 KVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNACS 220
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F L++C+ L G Q+ I++ GYG ++ V + I+ Y CG
Sbjct: 207 PDSITFCXFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMV 266
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ +I Y +N E+A L+ ++ ++L C +GL
Sbjct: 267 FDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCAC--AGL- 323
Query: 106 YAEVEIFNSME 116
+E+E S++
Sbjct: 324 -SEIEFGRSVQ 333
>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14850-like [Cucumis sativus]
Length = 606
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 94/198 (47%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT F ++VL +CA LS + GR + VK +IFV SA +++Y CG
Sbjct: 306 IEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIFVASALVDMYGKCGSIDNAE 365
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDII-ASGVKHDGVTFVAILTPCSHS 102
V+WN ++ GYA + +A++L +++ A+G+ V+ + L+ CS +
Sbjct: 366 QAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLICALSACSRA 425
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
G + ++IF SM+ + V+P CL MP+ + +WG
Sbjct: 426 GDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPFPPTISIWGA 485
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C++H L K AA
Sbjct: 486 LLGACRMHGKPELGKLAA 503
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P F F VL + L G+Q+ VK+G ND+FVG + ++Y G
Sbjct: 104 VRPNDFTFPCVLKASTGLRMDTTGKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAY 163
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
TWN I + E ++ + +++ G K D +TF A L CS
Sbjct: 164 KVFDEMPHRNLETWNAYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACS 220
Score = 42.0 bits (97), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F L++C+ L G Q+ I++ GYG ++ V + I+ Y CG
Sbjct: 207 PDSITFCAFLNACSDKLGLGPGCQLHGFIIRSGYGQNVSVSNGLIDFYGKCGEVECSEMV 266
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ +I Y +N E+A L+ ++ ++L C +GL
Sbjct: 267 FDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRARKEDIEPTDFMVSSVLCAC--AGL- 323
Query: 106 YAEVEIFNSME 116
+E+E S++
Sbjct: 324 -SEIEFGRSVQ 333
>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 790
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P + F+ + SCA L + G+Q +++K G+ + + G+A I +Y CGV
Sbjct: 415 PCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQV 474
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN +I ++ + +A+ +Y++++ G++ D +T + +LT CSH+GLV
Sbjct: 475 FRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLV 534
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVS 141
+ F+SME + + P +P+K +W L+S
Sbjct: 535 DQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLS 594
Query: 142 SCQVHSNVRLAKKAA 156
C+VH N+ L AA
Sbjct: 595 GCRVHGNMELGIIAA 609
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 27 ILTRIVKDGY---GNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83
++T VK+GY G ++ G N+ V +N MI GY + ++A+ + + +++S
Sbjct: 225 MMTGYVKNGYFDLGEELLEGMDD-NMKL---VAYNAMISGYVNRGFYQEALEMVRRMVSS 280
Query: 84 GVKHDGVTFVAILTPCSHSGLV 105
G++ D T+ +++ C+ +GL+
Sbjct: 281 GIELDEFTYPSVIRACATAGLL 302
>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 762
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 99/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F++VLS C+ L +L G Q+ + +K G+ +D+ VG+A +N+Y CG
Sbjct: 381 PDLFTFSSVLSVCSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKA 440
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI GYA+N +QA+ L++D+ +GV+ + +TFV +L+ CSH+G+V
Sbjct: 441 FVEMSIRTLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMV 500
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
++ F M++++++ P CL M + + +W L++
Sbjct: 501 DEALDYFQMMKNEYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIA 560
Query: 142 SCQVHSNVRLAKKAA 156
C+ + L AA
Sbjct: 561 GCRSQGKLELGFYAA 575
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 28/120 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +F T+ LS C + SL +G QI + +K G+ +++ + ++ + +Y CG
Sbjct: 267 VEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAK 326
Query: 55 -----------VTWNEMIHGYAE-----------NEYVEQAISLYKDIIASGVKHDGVTF 92
VTWN MI G+A ++ +A+S++ + SG+K D TF
Sbjct: 327 KLFDEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTF 386
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
YPT + T LS+ + L S LG+QI +K D +G++ ++Y CG
Sbjct: 167 YPTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVK 226
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
++W +I + +N + + ++++ V+ + T + L+ C
Sbjct: 227 AFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLC 281
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +L C + ++I IVK G D F+ + +N+Y CG
Sbjct: 72 YVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMETARKVFDELP 131
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W ++ GY + E A+ ++++++ +G T L+ S
Sbjct: 132 RRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYPTNYTLGTALSASS 181
>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++L +C+ L S+ LG+Q+ ++ +IFV +A +++Y G
Sbjct: 405 PNAVTLASILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESV 464
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VT+ MI GY ++ E A+SL+ + SG++ D +TFVA+L+ CS++GLV
Sbjct: 465 FTQSSERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLV 524
Query: 106 YAEVEIFNSMEHDHEVKP-------------------------KCLMPYKDDLVVWGDLV 140
+ IF SM+ D +++P K L + +WG L+
Sbjct: 525 DEGLRIFESMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLGEEGHVIEIWGSLL 584
Query: 141 SSCQVHSNVRLAKKAA 156
+C++H ++ L ++ +
Sbjct: 585 GACRLHGHIELGEEVS 600
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 18/113 (15%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVK--------DGYGNDIFVGSAPI----------NIY 50
T++LS+ + L + +G+Q +++ D Y D++ S I NI
Sbjct: 309 TSLLSAASNLRNREIGKQTHAYLIRHGIKFDGMDSYLIDMYAKSGLIRISQRVFENNNIQ 368
Query: 51 CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN +I GY +N VEQA ++ ++ ++ + VT +IL CS G
Sbjct: 369 NRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLG 421
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG--YGNDIFVGSAPINIYCNCGV--- 55
+ P+ F V + + + + ++K G Y ND+FV S+ I++Y G
Sbjct: 96 IKPSPVSFVNVFPAISSVGDFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDL 155
Query: 56 --------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKH---DGVTFVAILTP 98
WN MI G+ +N + + L+ + A +H D VTF++ LT
Sbjct: 156 CRKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLF--LQAMKTEHTILDDVTFLSALTA 213
Query: 99 CSH 101
S
Sbjct: 214 VSQ 216
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 91/189 (48%), Gaps = 42/189 (22%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F ++VLS+CA+L +L G+ + I K G D+ +G++ I++Y CG
Sbjct: 193 PNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCI 252
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+ W+ MI ++ + E+ + L+ ++ GV+ + VTFVA+L C H GL
Sbjct: 253 FDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGL 312
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V E F M +++ V P C+ MP + D+++WG L+
Sbjct: 313 VSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALL 372
Query: 141 SSCQVHSNV 149
+ ++H +V
Sbjct: 373 NGARIHGDV 381
>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
chloroplastic [Vitis vinifera]
gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
Length = 893
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++ F ++V+ + A L+SL +G Q+ + K G ++ VGS+ + +Y CG
Sbjct: 646 LWIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECH 705
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI YA++ +A+ +Y + G K D VTFV +L+ CSH+G
Sbjct: 706 KVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNG 765
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
+V NSM ++ ++P C+ MP + D ++WG L
Sbjct: 766 MVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFINNMPIEPDALLWGIL 825
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+VH ++ L + AA
Sbjct: 826 LAACKVHGDIELGRLAA 842
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 17/126 (13%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F+++L++CA L L GR + ++K G G D+FVG+A I++Y C
Sbjct: 246 PNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKE 305
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W +I G+ + + A +K++ G K + T ++LT C+ ++
Sbjct: 306 FLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMI 365
Query: 106 YAEVEI 111
V++
Sbjct: 366 KEAVQL 371
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 20/115 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F ++VLS + SL LGR I I+K G DI VGS+ +Y CG
Sbjct: 449 PDKFCSSSVLS---IIDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTV 505
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W MI G++E+++ EQA+ L+++++ ++ D +T A LT CS
Sbjct: 506 FEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACS 560
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 17/113 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
+ P Q T L++C+ L SL G+++ ++ G ++ VG A +N+Y CG
Sbjct: 545 IRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLAR 604
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+ + ++ GYA+N Y+E A+ L+ +I + + D T +++
Sbjct: 605 RVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVI 657
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIY------------ 50
P QF + +VLS+C L S G + + +K+G+ ++ +V + I+++
Sbjct: 145 PNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRV 204
Query: 51 -----CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
C V WN +I G +N A+ L+ + + TF +ILT C+
Sbjct: 205 FQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACA 259
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT-------- 56
+ T+VL++C + + Q+ + I K G+ D V SA IN+Y GV
Sbjct: 349 NYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFR 408
Query: 57 ----------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
W MI +A++ +A+ L++ ++ G++ D ++L+
Sbjct: 409 EMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRPDKFCSSSVLS 459
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 92/188 (48%), Gaps = 42/188 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++L++CA+ SL LG++I + G V +A I+++C CG
Sbjct: 352 SILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAE 411
Query: 55 ---VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
V+WN +I G+A + + ++A+ + + G + D VT + +L+ C+H G V +
Sbjct: 412 KDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLSACTHMGFVEEGRQH 471
Query: 112 FNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHS 147
F++ME D+ + P+ C+ MP+ + V+WG L+S+C++H
Sbjct: 472 FSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNEVIWGSLLSACRLHK 531
Query: 148 NVRLAKKA 155
NV A+ A
Sbjct: 532 NVEYAEIA 539
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW M+ A+N VE+A L+ + + V+ D V+IL C+ SG
Sbjct: 313 VTWTIMVSACAQNGLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESG 361
>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 630
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 43/193 (22%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q T+VL +C L+ L LG Q IVK Y D+ + +A +++YC CG
Sbjct: 260 QATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFN 317
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
+TW+ MI G A+N Y ++A+ L++ + +SG K + +T V +L CSH+GL+
Sbjct: 318 QMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLED 377
Query: 108 EVEIFNSM----------EH--------------DHEVKPKCLMPYKDDLVVWGDLVSSC 143
F SM EH D VK M + D V W L+ +C
Sbjct: 378 GWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGAC 437
Query: 144 QVHSNVRLAKKAA 156
+V N+ LA+ AA
Sbjct: 438 RVQRNMVLAEYAA 450
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 31/157 (19%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +++VL SC +S + R + I+K+G +D+FV SA I+++ G
Sbjct: 158 VRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDAL 214
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN +I G+A+N + A+ L+K + +G + T ++L C +G
Sbjct: 215 SVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRAC--TG 272
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140
L E+ + H H VK Y DL++ LV
Sbjct: 273 LALLELGM---QAHVHIVK------YDQDLILNNALV 300
>gi|413924724|gb|AFW64656.1| pentatricopeptide repeat protein PPR868-14 isoform 1 [Zea mays]
gi|413924725|gb|AFW64657.1| pentatricopeptide repeat protein PPR868-14 isoform 2 [Zea mays]
gi|413924726|gb|AFW64658.1| pentatricopeptide repeat protein PPR868-14 isoform 3 [Zea mays]
Length = 522
Score = 87.8 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT F +VL +C+ LSS LG Q+ + K G DI VGSA +++Y CG
Sbjct: 266 PTVSTFVSVLGACSLLSSPELGEQVHCQGTKSGLVLDIKVGSALVDMYAKCGRVEDGRRI 325
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPCSHSGL 104
+TW MI GY +N ++A+ L+ ++ V+ + TF++IL+ C+H+GL
Sbjct: 326 FNQMAERNVITWTSMIDGYGKNGLSDEALQLFGEMRERRDVRPNHATFLSILSACAHAGL 385
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
+ E F SME ++ ++P+ C+ MP + + VW L+
Sbjct: 386 LSQGQEAFQSMESEYLLQPRMEHYACMVDLLGRFGGVRQAYDFVRGMPVRPNSDVWAALL 445
Query: 141 SSCQVHSNVRLAKKAA 156
+ +H ++ + K A+
Sbjct: 446 GAATLHGDMDICKVAS 461
>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 867
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAK-LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----- 54
+ P +F F++V+++CA ++ G+Q +K N + V SA + +Y G
Sbjct: 490 IKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSA 549
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V+WN MI GY+++ ++A+ ++ ++ + D VTF+ ++T C+H+
Sbjct: 550 HEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHA 609
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
GLV + FNSM +DH + P C+ MP+ VW
Sbjct: 610 GLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRT 669
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ + +VH NV L + AA
Sbjct: 670 LLGAARVHRNVELGELAA 687
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT F +V+ SCA L L L + + + +K G+ D V +A + C
Sbjct: 291 VKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDAL 350
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+W MI G +N +QA++L+ + GVK + T+ AILT
Sbjct: 351 SLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT 405
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 40/183 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ +TV+++ + +G Q+ +VK G+ I V ++ I++Y G
Sbjct: 190 VLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDAR 249
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS--- 100
VTWN MI GY N + ++ + +GVK +TF +++ C+
Sbjct: 250 DVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLR 309
Query: 101 -------------HSGLVYAEVEIFNSM-------EHDHEVKPKCLMPYKDDLVVWGDLV 140
SG ++ I M E D + LM ++V W ++
Sbjct: 310 ELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMI 369
Query: 141 SSC 143
S C
Sbjct: 370 SGC 372
Score = 42.7 bits (99), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 21/117 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---- 56
V P F ++ +L+ + ++ ++K Y VG+A ++ Y G T
Sbjct: 393 VKPNHFTYSAILT----VHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAV 448
Query: 57 -------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
W+ M+ GYA+ E+A L+ +I G+K + TF +++ C+
Sbjct: 449 KVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACA 505
>gi|347954512|gb|AEP33756.1| chloroplast biogenesis 19, partial [Raphanus sativus]
Length = 476
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 41/189 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P L++C L +L G + +V + N++ V ++ I++YC CG
Sbjct: 179 VEPDYVAIIAALAACTNLGALSFGLWVHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFAR 238
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN +I G+A N + +++ ++ + K D VTF LT CSH G
Sbjct: 239 QVFDKMEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEERFKPDAVTFTGALTACSHVG 298
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV V F +M+ D+ + P+ CL MP K + VV G L
Sbjct: 299 LVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKVVESMPMKPNEVVIGSL 358
Query: 140 VSSCQVHSN 148
+++C+ H N
Sbjct: 359 LAACRTHGN 367
Score = 38.9 bits (89), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 34/135 (25%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG-NDIFVGSAPINIYCN------- 52
V P +LS C+ L G + K G+ N + VG+A + +Y
Sbjct: 65 VEPNHITLIALLSGCSDCEPL--GDSLHGYACKLGFDRNHVMVGTAILGMYSKRRRFRKA 122
Query: 53 ----------CGVTWNEMIHGYAE---------NEYV-----EQAISLYKDIIASGVKHD 88
VTWN MI GY N +V E+A++ ++++ SGV+ D
Sbjct: 123 RLVFDRMGDXNSVTWNTMIDGYXRDLISXTXMINGFVKKGLNEEALAWFREMQVSGVEPD 182
Query: 89 GVTFVAILTPCSHSG 103
V +A L C++ G
Sbjct: 183 YVAIIAALAACTNLG 197
>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1047
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 95/192 (49%), Gaps = 41/192 (21%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F F + + + ++ +++ G+Q+ I K GY ++ V +A I++Y CG
Sbjct: 676 FTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLE 735
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN MI+ Y+++ + +A+ + +I S V+ + VT V +L+ CSH GLV
Sbjct: 736 LSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKG 795
Query: 109 VEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQ 144
+E F SM ++ + PK C+ MP + D +VW L+S+C
Sbjct: 796 IEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACV 855
Query: 145 VHSNVRLAKKAA 156
VH N+ + + AA
Sbjct: 856 VHKNMEIGEFAA 867
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 70/124 (56%), Gaps = 17/124 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT + F++VLS+C K+ SL +G Q+ ++K G+ +D +V +A +++Y + G
Sbjct: 267 IMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAE 326
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VT+N +I+G ++ Y E+A+ L+K + G++ D T +++ CS G
Sbjct: 327 HIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDG 386
Query: 104 LVYA 107
+++
Sbjct: 387 TLFS 390
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 17/117 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P Q+ + ++L +C +L L LG QI ++I+K + + +V S I++Y G
Sbjct: 469 IVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAW 528
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+W MI GY + + ++A++ ++ ++ G++ D V ++ C+
Sbjct: 529 DILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACA 585
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ + T +S+CA L +L G+QI + G+ +D+ +A + +Y CG
Sbjct: 570 IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAY 629
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN ++ G+ ++ E+A+ ++ + G+ + TF + + S +
Sbjct: 630 LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETA 689
>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P F LS+CA+ +L LGR++ R+V + +F+GSA +N+Y CGV
Sbjct: 204 PDSMTFVATLSACAQAGALDLGREVERRVVSERMDISVFLGSALVNMYARCGVVDKARRW 263
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TW MI GY + + +AI L+ + G + VTFVA+L+ C+H+GLV
Sbjct: 264 FDALQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRCEGPPPNHVTFVAVLSACAHAGLV 323
Query: 106 YAEVEIFNSMEHDHEVKPKC-------------------------LMPYKDDLVVWGDLV 140
+ F M+ + + P+ MP + VW ++
Sbjct: 324 MEGRDAFACMKRVYGLVPRVEHYCSMVDMFGRAGLLDEAMQFISDYMPGEPGPEVWTAVL 383
Query: 141 SSCQVHSNVRLAKKAA 156
+C++H N L + A
Sbjct: 384 GACKMHKNFNLGVEVA 399
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 17/117 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F FT V +CA LS+L G I + G+G+D FV +A + +Y CG
Sbjct: 104 SSFTFTAVAKACADLSALRTGAAIHAHSILLGFGSDRFVLTALVVLYSKCGQLGVARKLF 163
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GY +N E+ I +YK++ A+ D +TFVA L+ C+ +G
Sbjct: 164 DAIRDRSVVAWNAMISGYEQNGLAERGIGVYKEMQAAKAVPDSMTFVATLSACAQAG 220
>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930-like [Cucumis sativus]
Length = 695
Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + ++V+SSCAKL+SL G+ + + + G N++ V SA I++Y CG
Sbjct: 318 IEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDAR 377
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI G A+N + + A+ L+++++ K D VTF+ IL+ C H
Sbjct: 378 SVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCN 437
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+ E F+S+ + H + P C+ M + D ++W L
Sbjct: 438 WIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTL 497
Query: 140 VSSCQVHSNVRLAKKAA 156
+S C ++ A+ AA
Sbjct: 498 LSICSTKGDIVNAEVAA 514
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 17/131 (12%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
PT++ ++L++ A+LS L G+QI I+ + ++F+ +A ++Y CG
Sbjct: 153 PTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWL 212
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN MI GYA+N E+ I L + SG D VT I+ G V
Sbjct: 213 FDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRV 272
Query: 106 YAEVEIFNSME 116
+F+ +
Sbjct: 273 DEARRVFSEFK 283
Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 27 ILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEY 69
+L ++ G+ D S I YC CG V W M+ GYA+N
Sbjct: 243 LLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGR 302
Query: 70 VEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
E A+ L+ +++ ++ D T ++++ C+
Sbjct: 303 EEDALLLFNEMLLEHIEPDSYTLSSVVSSCA 333
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,444,424,552
Number of Sequences: 23463169
Number of extensions: 94151367
Number of successful extensions: 267773
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5750
Number of HSP's successfully gapped in prelim test: 1293
Number of HSP's that attempted gapping in prelim test: 227211
Number of HSP's gapped (non-prelim): 27599
length of query: 156
length of database: 8,064,228,071
effective HSP length: 118
effective length of query: 38
effective length of database: 9,590,541,425
effective search space: 364440574150
effective search space used: 364440574150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)