BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041561
(156 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SVH0|PP329_ARATH Pentatricopeptide repeat-containing protein At4g20770
OS=Arabidopsis thaliana GN=PCMP-E35 PE=3 SV=2
Length = 774
Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 80/195 (41%), Positives = 109/195 (55%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + F TVLSSC++L SL GRQ +VK GY +D FV +A ++YC CG
Sbjct: 517 PNETSFATVLSSCSRLCSLLHGRQFHGLVVKSGYVSDSFVETALTDMYCKCGEIDSARQF 576
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WNEMIHGY N ++A+ LY+ +I+SG K DG+TFV++LT CSHSGLV
Sbjct: 577 FDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMISSGEKPDGITFVSVLTACSHSGLV 636
Query: 106 YAEVEIFNSMEHDHEVKPK---------CL---------------MPYKDDLVVWGDLVS 141
+EI +SM+ H ++P+ CL PYK V+W L+S
Sbjct: 637 ETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRLEDAEKLAEATPYKSSSVLWEILLS 696
Query: 142 SCQVHSNVRLAKKAA 156
SC+VH +V LA++ A
Sbjct: 697 SCRVHGDVSLARRVA 711
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 18/113 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P++F +VLS+C+K+ G + VK G +IFVG+A +++Y CG
Sbjct: 136 PSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIVDYGVR 195
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V++ +I G A V +A+ +++ + GV+ D V IL+
Sbjct: 196 VFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILS 248
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 20/121 (16%)
Query: 15 CAKLSSLF---LGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------- 54
C LS ++ LG+QI ++ G+G D+ + ++ + IY
Sbjct: 256 CDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNV 315
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+WN MI G+ + ++++ + SG + + VT +++L C SG V IF+S
Sbjct: 316 VSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSS 375
Query: 115 M 115
+
Sbjct: 376 I 376
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + + +LSSCA+L L G+QI +++ + + S I +Y C
Sbjct: 414 PDKTTLSVILSSCARLRFLEGGKQIHGVVIRTEISKNSHIVSGLIAVYSECEKMEISECI 473
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVK-HDGVTFVAILTPCSH 101
WN MI G+ N +A+ L++ + + V + +F +L+ CS
Sbjct: 474 FDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSR 531
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + +VL +C + + GR+I + I + WN M+
Sbjct: 348 PNEVTCISVLGACFRSGDVETGRRIFSSIPQPSVS------------------AWNAMLS 389
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
GY+ E+ E+AIS ++ + +K D T IL+ C+
Sbjct: 390 GYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCAR 428
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN MI + E+A+ +YK ++ G T ++L+ CS
Sbjct: 104 VSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACS 149
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 115 bits (289), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 101/203 (49%), Gaps = 47/203 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG------NDIFVGSAPINIYCNCG 54
V PT + F +L +CA L+ L LG Q ++K G+ +DIFVG++ I++Y CG
Sbjct: 382 VCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCG 441
Query: 55 -----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI G+A+N Y +A+ L+++++ SG K D +T + +L+
Sbjct: 442 CVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLS 501
Query: 98 PCSHSGLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDL 133
C H+G V F+SM D V P C+ MP + D
Sbjct: 502 ACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDS 561
Query: 134 VVWGDLVSSCQVHSNVRLAKKAA 156
V+WG L+++C+VH N+ L K A
Sbjct: 562 VIWGSLLAACKVHRNITLGKYVA 584
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 63/114 (55%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++ F +VLS+C+ L+ + G Q+ + I K + +D+++GSA +++Y CG
Sbjct: 151 NEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVF 210
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V+WN +I + +N +A+ +++ ++ S V+ D VT ++++ C+
Sbjct: 211 DEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACA 264
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 49/149 (32%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCG----- 54
V P + +V+S+CA LS++ +G+++ R+VK D NDI + +A +++Y C
Sbjct: 249 VEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEA 308
Query: 55 -------------------------------------------VTWNEMIHGYAENEYVE 71
V+WN +I GY +N E
Sbjct: 309 RFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENE 368
Query: 72 QAISLYKDIIASGVKHDGVTFVAILTPCS 100
+A+SL+ + V +F IL C+
Sbjct: 369 EALSLFCLLKRESVCPTHYSFANILKACA 397
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 20/93 (21%)
Query: 7 PFTTVLSSC--AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
PF +L SC +KLS++++ R + ++K G+ N+IF+ + I+ Y CG
Sbjct: 21 PFAKLLDSCIKSKLSAIYV-RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFD 79
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDI 80
TWN ++ G + ++++A SL++ +
Sbjct: 80 KMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSM 112
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 97/190 (51%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F++ LS+CA + +L LG+Q+ R+VK GY FVG+A + +YC CG
Sbjct: 412 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA 471
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+WN MI GY+ + + E A+ ++ + G+K D T VA+L+ CSH+GLV +
Sbjct: 472 GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 531
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
F +M D+ V P C+ MP++ D +WG L+ + +VH
Sbjct: 532 YFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVH 591
Query: 147 SNVRLAKKAA 156
N LA+ AA
Sbjct: 592 GNTELAETAA 601
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 51 CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
C TWN MI GYA+ + +A +L+ + K D V++ A++ S SG + +
Sbjct: 340 CRNVSTWNTMITGYAQCGKISEAKNLFDKM----PKRDPVSWAAMIAGYSQSGHSFEALR 395
Query: 111 IFNSMEHD 118
+F ME +
Sbjct: 396 LFVQMERE 403
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
V+WN +I GYA++ +++A L+ + D T+ A+++ + +V E+F+
Sbjct: 251 VSWNTIITGYAQSGKIDEARQLFDESPV----QDVFTWTAMVSGYIQNRMVEEARELFDK 306
Query: 115 MEHDHEVKPKCLM 127
M +EV ++
Sbjct: 307 MPERNEVSWNAML 319
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
+WN M+ GYA+N V+ A S++ + + + V++ A+L+ + + +F S
Sbjct: 159 SWNTMLSGYAQNGCVDDARSVFDRM----PEKNDVSWNALLSAYVQNSKMEEACMLFKSR 214
Query: 116 EHDHEVKPKCLM 127
E+ V CL+
Sbjct: 215 ENWALVSWNCLL 226
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 103/197 (52%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P ++ L C++LS+L LGRQI + K ND+ ++ I++YC CG
Sbjct: 280 IRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAW 339
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI GYA++ ++A+ L++++I + ++ D +TFVA+L C+H+G
Sbjct: 340 KLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAG 399
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV + F SM D++V+P+ C+ MP++ V+G L
Sbjct: 400 LVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTL 459
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+VH NV LA+ AA
Sbjct: 460 LGACRVHKNVELAEFAA 476
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTWN MI GY EN E + L++ ++ G++ + + L CS
Sbjct: 250 VTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCS 295
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 18/88 (20%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA-EVEIFN 113
V+WN MI GY E +E+A +K GV V + A++T G + A +VE+
Sbjct: 187 VSWNAMISGYIECGDLEKASHFFKVAPVRGV----VAWTAMIT-----GYMKAKKVELAE 237
Query: 114 SMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
+M D M +LV W ++S
Sbjct: 238 AMFKD--------MTVNKNLVTWNAMIS 257
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 101/197 (51%), Gaps = 42/197 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F + TVL +CA L+S LG+QI +++K +D+++ S +++Y CG
Sbjct: 599 ITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSR 658
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN MI GYA + E+AI L++ +I +K + VTF++IL C+H G
Sbjct: 659 LMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMG 718
Query: 104 LVYAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDL 139
L+ +E F M+ D+ + P+ MP++ D V+W L
Sbjct: 719 LIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTL 778
Query: 140 VSSCQVH-SNVRLAKKA 155
+ C +H +NV +A++A
Sbjct: 779 LGVCTIHRNNVEVAEEA 795
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+Q + +VL SCA LS L LG Q+ +K + D V +A +++Y C
Sbjct: 280 SQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILF 339
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++N MI GY++ E+ +A+ L+ +++SG+ D ++ + C+
Sbjct: 340 DNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 393
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 56/138 (40%), Gaps = 38/138 (27%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P +F F ++L +C SL G +I + IVK G ++ VG + I++Y CG
Sbjct: 479 IEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAE 537
Query: 55 -------------------------------VTWNEMIHGYAENEYVEQAISLYKDIIAS 83
V+WN +I GY E E A L+ ++
Sbjct: 538 KIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEM 597
Query: 84 GVKHDGVTFVAILTPCSH 101
G+ D T+ +L C++
Sbjct: 598 GITPDKFTYATVLDTCAN 615
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 34 DGYG--NDIFVGSAPINIY-CNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV 90
+GY ND+F ++ N+ V+WN M+ GY +N ++I ++ D+ G++ DG
Sbjct: 122 NGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGR 181
Query: 91 TFVAILTPCS 100
TF IL CS
Sbjct: 182 TFAIILKVCS 191
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 98/194 (50%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
+ F F ++LS A + S+ G QI +++VK G + V +A I++Y CG
Sbjct: 473 SAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVF 532
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
++W MI G+A++ + + + + +I GVK + VT+VAIL+ CSH GLV
Sbjct: 533 NFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVS 592
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
FNSM DH++KPK C+ MP++ D++VW + +
Sbjct: 593 EGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGA 652
Query: 143 CQVHSNVRLAKKAA 156
C+VHSN L K AA
Sbjct: 653 CRVHSNTELGKLAA 666
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 24/119 (20%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F ++V S+CA+L +L LG+Q+ + ++ G +D V + +++Y C
Sbjct: 269 KFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRK 326
Query: 55 ----------VTWNEMIHGYAEN-EYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSH 101
++W +I GY +N +AI+L+ ++I G V+ + TF + C +
Sbjct: 327 VFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGN 385
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F++ +C LS +G+Q+L + K G ++ V ++ I+++
Sbjct: 369 VEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQ 428
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N + G N EQA L +I + TF ++L+ ++ G
Sbjct: 429 RAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVG 488
Query: 104 LVYAEVEI 111
+ +I
Sbjct: 489 SIRKGEQI 496
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG------- 54
P + +T V+ +C+ + +GR L ++K G + +D+ VG + I+++
Sbjct: 164 PNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAY 223
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTW MI + + +AI + D++ SG + D T ++ + C+
Sbjct: 224 KVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAE 281
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 20/118 (16%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
F+++L SC + LG+ + R+++ D + ++ I++Y G
Sbjct: 65 FSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMR 124
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ M+ Y N AI ++ + + G+ + + A++ CS+S V
Sbjct: 125 RFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFV 182
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 95/198 (47%), Gaps = 42/198 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P +VL +CA L L +GR++ ++G+ ++I+V +A I +Y CG+
Sbjct: 211 VKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAK 270
Query: 56 -------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
+WN MI A + ++A++L+ ++ G K D VTFV +L C H
Sbjct: 271 RLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHG 330
Query: 103 GLVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGD 138
G+V E+F SME H++ PK C+ MP K D VVWG
Sbjct: 331 GMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGT 390
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+ +C H NV +A+ A+
Sbjct: 391 LLGACSFHGNVEIAEIAS 408
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 22/118 (18%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYA 65
F TT++++ AKL +L R++ + K P+ WN MI GY
Sbjct: 118 FCCTTLITAYAKLGALCCARRVFDEMSKR---------DVPV---------WNAMITGYQ 159
Query: 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP 123
++ A+ L+ + V ++ +++ S +G +++F ME D VKP
Sbjct: 160 RRGDMKAAMELFDSMPRKNV----TSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKP 213
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F +VLSSCA L + +G ++ + +G+ ++FV +A I++Y CG
Sbjct: 253 VCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKAR 312
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI Y + E + L+ D+I G++ DG FV +L+ CSHSG
Sbjct: 313 AVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSG 372
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
L +E+F +M+ +++++P CL MP + D VWG L
Sbjct: 373 LTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGAL 432
Query: 140 VSSCQVHSNVRLAKKA 155
+ +C++H NV +A+ A
Sbjct: 433 LGACKIHKNVDMAELA 448
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F +L SCA LS G+Q+ + K G + FV +A I++YC CG
Sbjct: 51 PDAFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKV 110
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
V +N +I GY N V A +++ + +GV D VT + ++ C+
Sbjct: 111 FEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCT 167
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 17/100 (17%)
Query: 21 LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHG 63
L+LGR + + VK G +++ V ++ I +Y CG +TWN +I G
Sbjct: 172 LWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISG 231
Query: 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
Y++N + LY+ + +SGV D T V++L+ C+H G
Sbjct: 232 YSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLG 271
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
WN + A ++ISLY+ ++ SG D +F IL C+ L
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSL 68
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 100/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F++V+ +CA L++L LG+Q+ +++ G+G++IF+ SA +++Y CG
Sbjct: 339 VKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAAR 398
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W +I G+A + + +A+SL++++ GVK + V FVA+LT CSH G
Sbjct: 399 KIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVG 458
Query: 104 LVYAEVEIFNSM--------EHDHEVKPKCLMPYKDDL----------------VVWGDL 139
LV FNSM E +H L+ L VW L
Sbjct: 459 LVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTL 518
Query: 140 VSSCQVHSNVRLAKKAA 156
+SSC VH N+ LA+K A
Sbjct: 519 LSSCSVHKNLELAEKVA 535
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 60/116 (51%), Gaps = 17/116 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPIN-------------- 48
P F ++VL ++ + G++I +++ G +D+++GS+ ++
Sbjct: 240 PDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERV 299
Query: 49 ---IYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+YC G++WN ++ GY +N +A+ L++ ++ + VK V F +++ C+H
Sbjct: 300 FSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAH 355
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 53/147 (36%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC----------- 51
P F +VL SC + L G + IV+ G D++ G+A +N+Y
Sbjct: 103 PDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISV 162
Query: 52 ------------NCG------------------------------VTWNEMIHGYAENEY 69
N G V++N +I GYA++
Sbjct: 163 GNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGM 222
Query: 70 VEQAISLYKDIIASGVKHDGVTFVAIL 96
E A+ + +++ + +K D T ++L
Sbjct: 223 YEDALRMVREMGTTDLKPDSFTLSSVL 249
>sp|Q1PFQ9|PPR62_ARATH Pentatricopeptide repeat-containing protein At1g28690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2
SV=2
Length = 520
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 97/196 (49%), Gaps = 41/196 (20%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P F +V+ +C+ L+S +G+Q+ +I+K G I +GS+ +++Y CG
Sbjct: 270 HPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARR 329
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
+W MI GY +N E+A+ L+ + ++ + VTF+ L+ CSHSGL
Sbjct: 330 VFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGL 389
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V EIF SM+ D+ +KPK C+ MP + D +W L+
Sbjct: 390 VDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALL 449
Query: 141 SSCQVHSNVRLAKKAA 156
SSC +H NV LA AA
Sbjct: 450 SSCNLHGNVELASIAA 465
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 17/97 (17%)
Query: 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCGV-----------------TWNEMIHGYAE 66
G++I I+K G+ D+ + + ++ CG +N MI GY +
Sbjct: 53 GKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLK 112
Query: 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ V++ + L + + SG K DG T +L + G
Sbjct: 113 HGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRG 149
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 41/193 (21%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q F TVL + A +SL LG+Q+ I++ G ++F GS +++Y CG
Sbjct: 452 QSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFE 511
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+WN +I +A+N E AI + +I SG++ D V+ + +LT CSH G V
Sbjct: 512 EMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQ 571
Query: 108 EVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSC 143
E F +M + + PK C+ MP++ D ++W ++++C
Sbjct: 572 GTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNAC 631
Query: 144 QVHSNVRLAKKAA 156
++H N LA++AA
Sbjct: 632 RIHKNQSLAERAA 644
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 17/108 (15%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------------ 53
FPF T+LS A LSSL +GRQ+ + + + + VG++ +++Y C
Sbjct: 352 FPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKS 411
Query: 54 -----GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
V+W +I GY + + L+ + S ++ D TF +L
Sbjct: 412 LPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVL 459
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/174 (17%), Positives = 70/174 (40%), Gaps = 31/174 (17%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ F F+ VL + L LG+Q+ V G+ D VG+ ++ Y
Sbjct: 248 PSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRML 307
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V++N +I Y++ + E ++ ++++ G F +L+ ++
Sbjct: 308 FDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAAN---- 363
Query: 106 YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG----DLVSSCQVHSNVRLAKKA 155
+S++ ++ + L+ D ++ G D+ + C++ L K+
Sbjct: 364 ------LSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKS 411
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASG--VKHDGVTFVAILTPCS 100
VTW ++ YA N + ++A L++ + S D VTF +L C+
Sbjct: 111 VTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCN 158
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + VL +CA LS+ GR+I I+++GY +D V ++ +++Y CG
Sbjct: 497 PDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHML 556
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W MI GY + + ++AI+L+ + +G++ D ++FV++L CSHSGLV
Sbjct: 557 FDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLV 616
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
FN M H+ +++P C+ MP D +WG L+
Sbjct: 617 DEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLC 676
Query: 142 SCQVHSNVRLAKKAA 156
C++H +V+LA+K A
Sbjct: 677 GCRIHHDVKLAEKVA 691
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + T VL+ CA+ L G+++ I ++ G DIFV +A +++Y CG
Sbjct: 393 ISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAE 452
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCS 100
++WN +I GY++N Y +A+SL+ ++ D T +L C+
Sbjct: 453 LVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACA 510
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F+ V S + L S+ G Q+ I+K G+G VG++ + Y
Sbjct: 196 YTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDE 255
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN +I+GY N E+ +S++ ++ SG++ D T V++ C+ S L+
Sbjct: 256 MTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLI 312
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 17/100 (17%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+VL CA SL G+++ I +G+ D +GS +Y NCG
Sbjct: 99 SVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIE 158
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF 92
+ WN +++ A++ +I L+K +++SGV+ D TF
Sbjct: 159 KALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
+V + CA + LGR + + VK + + + +++Y CG
Sbjct: 301 SVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR 360
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V++ MI GYA +A+ L++++ G+ D T A+L C+ L+
Sbjct: 361 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLL 413
>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2
SV=1
Length = 768
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +L C ++SSL LG Q+ +K G + F+ + I++Y CG
Sbjct: 471 PDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRI 530
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W+ +I GYA++ + E+A+ L+K++ ++G++ + VTFV +LT CSH GLV
Sbjct: 531 FDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLV 590
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
++++ +M+ +H + P C+ M + D+VVW L+S
Sbjct: 591 EEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLS 650
Query: 142 SCQVHSNVRLAKKAA 156
+C+ NV LA+KAA
Sbjct: 651 ACKTQGNVHLAQKAA 665
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
+P ++ F + L +C+ L G QI +K + G + ++Y CG
Sbjct: 267 HPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARR 326
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
+WN +I G A N Y ++A+S++ + +SG D ++ ++L
Sbjct: 327 VFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLL 378
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P QF F +++ +CA S + LG+Q+ +++K + + +A I +Y
Sbjct: 166 PDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRV 225
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH-DGVTFVAILTPCS 100
++W+ +I G+++ + +A+S K++++ GV H + F + L CS
Sbjct: 226 FYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACS 281
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 17/112 (15%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
+ +++ +C+ SL GR+I I+ D + + +++Y CG
Sbjct: 70 YISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMP 129
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
V++ +I GY++N +AI LY ++ + D F +I+ C+ S
Sbjct: 130 ERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASS 181
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 18/115 (15%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++L + K +L G QI + I+K G+ D+ V ++ + +Y C
Sbjct: 369 PDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNL 428
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN ++ ++E + + L+K ++ S + D +T +L C
Sbjct: 429 FEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLRGC 483
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---- 56
V P F ++L++CA L + GR I IV++ + + V +A I++YC CG
Sbjct: 254 VKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGL 313
Query: 57 -------------WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN MI G A N + E+A+ L+ ++ SG++ D V+F+ +LT C+HSG
Sbjct: 314 NVFECAPKKQLSCWNSMILGLANNGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSG 373
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDL 139
V+ E F M+ + ++P MP ++D V+W L
Sbjct: 374 EVHRADEFFRLMKEKYMIEPSIKHYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSL 433
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+ NV +AK+AA
Sbjct: 434 LSACRKIGNVEMAKRAA 450
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 70/140 (50%), Gaps = 22/140 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + + +V + +L GRQ+ ++K+G +D F+ + +++Y CG
Sbjct: 122 VKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAW 181
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI G+A+ ++QA +L+ ++ + +GV++ ++++ +G
Sbjct: 182 RIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEM----PQRNGVSWNSMISGFVRNG 237
Query: 104 LVYAEVEIFNSMEHDHEVKP 123
+++F M+ + +VKP
Sbjct: 238 RFKDALDMFREMQ-EKDVKP 256
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIAS--GVKHDGVTFVAIL 96
WN +I G++ + + E AIS++ D++ S VK +T+ ++
Sbjct: 92 WNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVF 133
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 99/196 (50%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + FT+++++CA +++L G+Q+ RI + G+ ++ + +A I++Y CG
Sbjct: 311 PNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRV 370
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+W M+ GY + Y +A+ L+ +++SG++ D + F+A+L+ C H+GL
Sbjct: 371 FGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGL 430
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLV 140
V ++ FN ME ++ + P C+ MP+K D WG ++
Sbjct: 431 VEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAIL 490
Query: 141 SSCQVHSNVRLAKKAA 156
+C+ H + L + A
Sbjct: 491 GACKAHKHNGLISRLA 506
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 18/148 (12%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P +F ++VL SC + L G + +VK G ++V +A +N+Y C VT
Sbjct: 109 PNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVT------ 162
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM-EHDHEV 121
+E A +++DI VK+D VT+ ++T +H G ++++ M + EV
Sbjct: 163 -------MEAACLIFRDI---KVKND-VTWTTLITGFTHLGDGIGGLKMYKQMLLENAEV 211
Query: 122 KPKCLMPYKDDLVVWGDLVSSCQVHSNV 149
P C+ + + Q+H++V
Sbjct: 212 TPYCITIAVRASASIDSVTTGKQIHASV 239
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 56/115 (48%), Gaps = 18/115 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
T + T + + A + S+ G+QI ++K G+ +++ V ++ +++YC CG
Sbjct: 212 TPYCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYF 271
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
+TWN +I ++ E A+ +++ + G + TF +++ C++
Sbjct: 272 HEMEDKDLITWNTLISELERSDSSE-ALLMFQRFESQGFVPNCYTFTSLVAACAN 325
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V W MI GYA + Y +A + +++ G + T ++L C +
Sbjct: 77 VAWTAMITGYASSNYNARAWECFHEMVKQGTSPNEFTLSSVLKSCRN 123
>sp|Q9LNP2|PPR47_ARATH Putative pentatricopeptide repeat-containing protein At1g17630
OS=Arabidopsis thaliana GN=PCMP-E72 PE=3 SV=1
Length = 731
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 96/187 (51%), Gaps = 41/187 (21%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+LS CA+L +L LGR+I +++ +I V +A +N+Y CG
Sbjct: 440 ILSICAELPALNLGREIHGHVIRTSMSENILVQNALVNMYAKCGLLSEGSLVFEAIRDKD 499
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113
++WN +I GY + + E+A+S++ +I+SG DG+ VA+L+ CSH+GLV EIF
Sbjct: 500 LISWNSIIKGYGMHGFAEKALSMFDRMISSGFHPDGIALVAVLSACSHAGLVEKGREIFY 559
Query: 114 SMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSNV 149
SM ++P+ C+ MP + + V G L++SC++H NV
Sbjct: 560 SMSKRFGLEPQQEHYACIVDLLGRVGFLKEASEIVKNMPMEPKVCVLGALLNSCRMHKNV 619
Query: 150 RLAKKAA 156
+A+ A
Sbjct: 620 DIAEGIA 626
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV---------------- 55
S CA+L +L + ++ ++K G+ + +A I++Y G
Sbjct: 301 FSVCAELEALSIAEKVHGYVIKGGFEEYLPSRNALIHVYGKQGKVKDAEHLFRQIRNKGI 360
Query: 56 -TWNEMIHGYAENEYVEQAISLYKDII----ASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+WN +I + + +++A+SL+ ++ VK + VT+ +++ C+ G +E
Sbjct: 361 ESWNSLITSFVDAGKLDEALSLFSELEEMNHVCNVKANVVTWTSVIKGCNVQGRGDDSLE 420
Query: 111 IFNSME 116
F M+
Sbjct: 421 YFRQMQ 426
>sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protein At1g56690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2
SV=1
Length = 704
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 96/197 (48%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P+ ++LS CA L+SL GRQ+ +V+ + +D++V S + +Y CG
Sbjct: 327 VRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAK 386
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN +I GYA + E+A+ ++ ++ +SG + VT +AILT CS++G
Sbjct: 387 LVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAG 446
Query: 104 LVYAEVEIFNSMEHDHEVKP-------------------KCL-----MPYKDDLVVWGDL 139
+ +EIF SME V P K + M K D VWG L
Sbjct: 447 KLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGAL 506
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +C+ HS + LA+ AA
Sbjct: 507 LGACKTHSRLDLAEVAA 523
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 99/190 (52%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
TT+L +C+++++L G++I +I+K D+ + ++ +++Y CG
Sbjct: 340 LTTILPACSRVAALLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVML 399
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+WN M++ YA N +E+ I+L++ +I SGV DG+TFVA+L+ CS +GL +
Sbjct: 400 TKDLASWNIMLNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLS 459
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
+F M+ + V P CL MP+K +WG L++SC++H
Sbjct: 460 LFERMKTEFRVSPALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLH 519
Query: 147 SNVRLAKKAA 156
NV + + AA
Sbjct: 520 GNVSVGEIAA 529
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F + L +C L L +GR I +IVK D V + + +Y G
Sbjct: 232 IEPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDAR 291
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTWN +I ++ V + +L++ + + T IL CS
Sbjct: 292 KVFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVA 351
Query: 104 LVYAEVEI 111
+ EI
Sbjct: 352 ALLTGKEI 359
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 93/198 (46%), Gaps = 44/198 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P T+ +S+CA++ SL R + + + Y +D+F+ SA I+++ CG
Sbjct: 319 VRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGAR 378
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V W+ MI GY + +AISLY+ + GV + VTF+ +L C+HSG
Sbjct: 379 LVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSG 438
Query: 104 LVYAEVEIFNSMEHDHEVKP-------------------------KCLMPYKDDLVVWGD 138
+V FN M DH++ P KC MP + + VWG
Sbjct: 439 MVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKC-MPVQPGVTVWGA 496
Query: 139 LVSSCQVHSNVRLAKKAA 156
L+S+C+ H +V L + AA
Sbjct: 497 LLSACKKHRHVELGEYAA 514
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 19/116 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F F +L +C+ LS L +GR + ++ + G+ D+FV + I +Y C
Sbjct: 115 VSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSAR 174
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+W ++ YA+N +A+ ++ + VK D V V++L
Sbjct: 175 TVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLN 230
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P +VL++ L L GR I +VK G + + + +Y CG
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAK 277
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN MI GYA+N Y +AI ++ ++I V+ D ++ + ++ C+ G
Sbjct: 278 ILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVG 337
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIF 112
WN +I GY+ N + + A+ +Y ++ + V D TF +L C SGL + ++ F
Sbjct: 87 WNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKAC--SGLSHLQMGRF 140
>sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protein At2g37320
OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1
Length = 500
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 97/196 (49%), Gaps = 43/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + FT +LS+C +L GR + + + G + + + ++ I++YC CG
Sbjct: 219 PNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLHISNSLISMYCKCGDLKDAFRI 278
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDII-ASGVKHDGVTFVAILTPCSHSGL 104
V+WN MI GYA++ QAI L++ ++ SG K D +T++ +L+ C H+GL
Sbjct: 279 FDQFSNKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGL 338
Query: 105 VYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLV 140
V + FN M +H +KP+ CL MP K + V+WG L+
Sbjct: 339 VKEGRKFFNLMA-EHGLKPELNHYSCLVDLLGRFGLLQEALELIENMPMKPNSVIWGSLL 397
Query: 141 SSCQVHSNVRLAKKAA 156
SC+VH +V +AA
Sbjct: 398 FSCRVHGDVWTGIRAA 413
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 17/115 (14%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ ++ + SC G +K G+ +D+++GS+ + +Y + G
Sbjct: 121 YGLSSAVRSCGLNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKVFEE 180
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+W MI G+A+ V+ + LY + S + TF A+L+ C+ SG
Sbjct: 181 MPERNVVSWTAMISGFAQEWRVDICLKLYSKMRKSTSDPNDYTFTALLSACTGSG 235
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +VL +CA L++L G+ I I++ G + + V SA + +Y CG
Sbjct: 283 PNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRV 342
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+WN +I Y + Y ++AI ++++++A+G VTFV++L CSH GLV
Sbjct: 343 FDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLV 402
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+F +M DH +KP+ C+ M + VWG L+
Sbjct: 403 EEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLG 462
Query: 142 SCQVHSNVRLAKKAA 156
SC++H NV LA++A+
Sbjct: 463 SCRIHGNVELAERAS 477
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 23/123 (18%)
Query: 1 VYPTQFPFTTVLSSCAK----LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-- 54
V +F +T VL +C ++ L G++I + + GY + +++ + +++Y G
Sbjct: 174 VESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCV 233
Query: 55 ---------------VTWNEMIHGYAENEYVEQAISLYKDII--ASGVKHDGVTFVAILT 97
V+W+ MI YA+N +A+ +++++ + VT V++L
Sbjct: 234 DYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQ 293
Query: 98 PCS 100
C+
Sbjct: 294 ACA 296
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 17/114 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+Q + ++ C SSL ++ I+ +G D F+ + I +Y + G
Sbjct: 75 PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
WN + + E+ + LY + GV+ D T+ +L C
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKAC 188
>sp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3
SV=1
Length = 695
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 42/196 (21%)
Query: 3 PT-QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------- 54
PT + ++V+S+CA +SSL LG Q+ R G +D V S+ I++YC CG
Sbjct: 447 PTDEVSLSSVISACASISSLELGEQVFARATIVGLDSDQVVSSSLIDLYCKCGFVEHGRR 506
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V WN MI GYA N +AI L+K + +G++ +TF+ +LT C++ GL
Sbjct: 507 VFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFKKMSVAGIRPTQITFMVVLTACNYCGL 566
Query: 105 VYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLV 140
V ++F SM+ DH P C+ MP+ D +W ++
Sbjct: 567 VEEGRKLFESMKVDHGFVPDKEHFSCMVDLLARAGYVEEAINLVEEMPFDVDGSMWSSIL 626
Query: 141 SSCQVHSNVRLAKKAA 156
C + + KKAA
Sbjct: 627 RGCVANGYKAMGKKAA 642
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 68/187 (36%), Gaps = 61/187 (32%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
TTVL +CA+L +L G+QI +I+ G D + S+ +N+Y CG
Sbjct: 190 LTTVLKACAELEALKCGKQIHAQILIGGVECDSKMNSSLVNVYAKCGDLRMASYMLEQIR 249
Query: 55 -----------------------------------VTWNEMIHGYAENEYVEQAISLYKD 79
+ WN MI GY N +A+ L+ +
Sbjct: 250 EPDDHSLSALISGYANCGRVNESRGLFDRKSNRCVILWNSMISGYIANNMKMEALVLFNE 309
Query: 80 IIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG-- 137
+ + + D T A++ C G + ++ H H C DD+VV
Sbjct: 310 -MRNETREDSRTLAAVINACIGLGFLETGKQM-----HCH----ACKFGLIDDIVVASTL 359
Query: 138 -DLVSSC 143
D+ S C
Sbjct: 360 LDMYSKC 366
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VT N ++HGY N Y E+A+ L+K++ S D +T +L C+
Sbjct: 156 VTLNSLLHGYILNGYAEEALRLFKELNFSA---DAITLTTVLKACAE 199
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54
V+++C L L G+Q+ K G +DI V S +++Y CG
Sbjct: 321 LAAVINACIGLGFLETGKQMHCHACKFGLIDDIVVASTLLDMYSKCG 367
>sp|Q9C8L6|PPR80_ARATH Pentatricopeptide repeat-containing protein At1g53600,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2
SV=2
Length = 717
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + F++VLS+ A L+ L G QI R+VK ND+ V ++ +++YC CG
Sbjct: 434 VCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAY 493
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V++N MI GY+ N + ++A+ L+ + +SG + +GVTF+A+L+ C H G
Sbjct: 494 KIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVG 553
Query: 104 LVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDL 139
V + F SM+ + ++P C+ MP K VWG L
Sbjct: 554 YVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSL 613
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+ + H V LA+ AA
Sbjct: 614 LSASKTHLRVDLAELAA 630
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114
+TW MI + N Y E+A+ + ++ V + TF ++L+ + + ++I
Sbjct: 404 ITWTAMISAFVSNGYYEEALCWFHKMLQKEVCPNSYTFSSVLSATASLADLIEGLQI--- 460
Query: 115 MEHDHEVKPKCLMPYKDDLVVWGDLVS 141
H VK M +DL V LVS
Sbjct: 461 --HGRVVK----MNIVNDLSVQNSLVS 481
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 94/195 (48%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F +VL++CA L SL +G I T I K+ ND+ VG+A I++Y CG
Sbjct: 366 PDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKV 425
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TW M+ G A N ++AI ++ + ++ D +T++ +L+ C+HSG+V
Sbjct: 426 FHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMV 485
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
+ F M DH ++P C+ MP + +VWG L+
Sbjct: 486 DQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLG 545
Query: 142 SCQVHSNVRLAKKAA 156
+ ++H++ +A+ AA
Sbjct: 546 ASRLHNDEPMAELAA 560
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 1 VYPTQFPFTTVLSSCAK-LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV---- 55
V P F +L+ + +L G+++ +VK G G++++V +A + +Y CG+
Sbjct: 130 VTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMA 189
Query: 56 -------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+WN MI GY + E++I L ++ + V VT + +L+ CS
Sbjct: 190 RGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W MI GY +++ +++++ ++G+ D T V++LT C+H G
Sbjct: 334 ISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLG 382
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN MI G+++ + + + LY +++ GV D TF +L G
Sbjct: 100 VVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDG 148
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 95/196 (48%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + +TV+S+CA L L +G+++ +++G+ D+++GSA +++Y CG
Sbjct: 283 IIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERAL 342
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
WN +I G A + + ++A+ ++ + VK + VTFV++ T C+H+G
Sbjct: 343 LVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAG 402
Query: 104 LVYAEVEIFNSMEHDHEVKPKCL------------------------MPYKDDLVVWGDL 139
LV I+ SM D+ + M ++ + V+WG L
Sbjct: 403 LVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGAL 462
Query: 140 VSSCQVHSNVRLAKKA 155
+ C++H N+ +A+ A
Sbjct: 463 LDGCRIHKNLVIAEIA 478
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++W MI GY++N+ +AI+++ ++ G+ D VT +++ C+H G++
Sbjct: 253 ISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVL 303
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ Q + +VL +C++ +L G ++ R++K+G D+FV ++ ++Y CG
Sbjct: 447 IAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDAL 506
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V WN +I + + + E+A+ L+K+++ GVK D +TFV +L+ CSHSG
Sbjct: 507 SLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSG 566
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV F M+ D+ + P C+ M + D +WG L
Sbjct: 567 LVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGAL 626
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C+VH NV L K A+
Sbjct: 627 LSACRVHGNVDLGKIAS 643
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++LS+C + G I + +K G +++FV + I++Y G
Sbjct: 252 SLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVR 311
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
++WN +I Y NE +AISL++++ S ++ D +T +++ + S G + A
Sbjct: 312 DLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRA 366
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG----- 54
+ P ++ S ++L + R + ++ G + DI +G+A + +Y G
Sbjct: 344 IQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSA 403
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSH 101
++WN +I GYA+N + +AI +Y + G + + T+V++L CS
Sbjct: 404 RAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQ 463
Query: 102 SG 103
+G
Sbjct: 464 AG 465
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 24/118 (20%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P F +VL +C ++ G +I +K G+ D++V ++ I++Y
Sbjct: 151 PDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARIL 207
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI GY ++ ++A++L + A D VT V++L+ C+ +G
Sbjct: 208 FDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAG 261
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V +F VLS+C+ L +L LGR + + + FVG+A IN+Y CG
Sbjct: 251 VSANEFTAVCVLSACSDLGALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEAR 310
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+++N MI G A + +AI+ ++D++ G + + VT VA+L CSH G
Sbjct: 311 RVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGG 370
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L+ +E+FNSM+ V+P+ C+ +P + D ++ G L
Sbjct: 371 LLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTL 430
Query: 140 VSSCQVHSNVRLAKKAA 156
+S+C++H N+ L +K A
Sbjct: 431 LSACKIHGNMELGEKIA 447
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 52/151 (34%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVG----------------- 43
V P + T+VL +C L + R+I +++K G+G+ VG
Sbjct: 123 VLPDNYVITSVLKAC----DLKVCREIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAK 178
Query: 44 --------------SAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQ 72
+ IN Y CG V W MI G N+ + +
Sbjct: 179 KMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNK 238
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
A+ L++++ V + T V +L+ CS G
Sbjct: 239 ALELFREMQMENVSANEFTAVCVLSACSDLG 269
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P LS+CA+L +L G+ I + + K D +G I++Y CG
Sbjct: 243 VEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEAL 302
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
W +I GYA + + +AIS + ++ G+K + +TF A+LT CS++G
Sbjct: 303 EVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTG 362
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV IF SME D+ +KP C+ MP K + V+WG L
Sbjct: 363 LVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGAL 422
Query: 140 VSSCQVHSNVRLAKK 154
+ +C++H N+ L ++
Sbjct: 423 LKACRIHKNIELGEE 437
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 68/135 (50%), Gaps = 22/135 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F ++L +C+ LS+ QI +I K GY ND++ ++ IN Y G
Sbjct: 116 YTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDR 175
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V+WN +I GY + ++ A++L++ + + + +++ +++ + +
Sbjct: 176 IPEPDDVSWNSVIKGYVKAGKMDIALTLFRKM----AEKNAISWTTMISGYVQADMNKEA 231
Query: 109 VEIFNSMEHDHEVKP 123
+++F+ M+ + +V+P
Sbjct: 232 LQLFHEMQ-NSDVEP 245
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 28/149 (18%)
Query: 6 FPFTTVLSSC-AKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCGVTWNEMIHG 63
+ T LS C + SS FL +IV DG+ D F+ WN MI G
Sbjct: 47 YAITKFLSFCISSTSSDFLP---YAQIVFDGFDRPDTFL--------------WNLMIRG 89
Query: 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP 123
++ ++ E+++ LY+ ++ S H+ TF ++L CS+ + F H
Sbjct: 90 FSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSN-------LSAFEETTQIHAQIT 142
Query: 124 KCLMPYKDDLVVWGDLVSSCQVHSNVRLA 152
K + Y++D+ L++S V N +LA
Sbjct: 143 K--LGYENDVYAVNSLINSYAVTGNFKLA 169
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 41/193 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
+ P + +VL SCA+L SL LG+ I + G+ V +A I +Y CGV
Sbjct: 237 IEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAI 296
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+W+ MI GYA + AI + ++ + VK +G+TF+ +L+ CSH G
Sbjct: 297 QLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVG 356
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
+ + F+ M D++++PK CL MP K D +WG L
Sbjct: 357 MWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSL 416
Query: 140 VSSCQVHSNVRLA 152
+SSC+ N+ +A
Sbjct: 417 LSSCRTPGNLDVA 429
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P +F F + SCA L S +LG+Q+ + K G + +A I++Y
Sbjct: 107 PDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKV 166
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
++WN ++ GYA +++A L+ ++ + V++ A+++ + G
Sbjct: 167 FDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTI----VSWTAMISGYTGIGCY 222
Query: 106 YAEVEIFNSME 116
++ F M+
Sbjct: 223 VEAMDFFREMQ 233
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 93/196 (47%), Gaps = 41/196 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + VLS+CA L SL LG +I + + G + + +A I++Y G
Sbjct: 246 VEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKAL 305
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VTW +I G A + + +A++++ ++ +GV+ + VTF+AIL+ CSH G
Sbjct: 306 DVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVG 365
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
V +FNSM + + P C+ MP+K + +WG L
Sbjct: 366 WVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSL 425
Query: 140 VSSCQVHSNVRLAKKA 155
+++ VH ++ L ++A
Sbjct: 426 LAASNVHHDLELGERA 441
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 60/151 (39%), Gaps = 50/151 (33%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P F F VL ++S ++ GRQI ++V G+ + + V + I +Y +CG
Sbjct: 114 PDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKM 173
Query: 55 ------------------------------------------VTWNEMIHGYAENEYVEQ 72
V+W +I GYA++ +
Sbjct: 174 FDEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASE 233
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
AI +++ ++ V+ D VT +A+L+ C+ G
Sbjct: 234 AIEVFQRMLMENVEPDEVTLLAVLSACADLG 264
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 98/186 (52%), Gaps = 41/186 (22%)
Query: 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------- 54
++L++C + L LG +I + + + G++ +V +A +++Y CG
Sbjct: 320 SILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKK 379
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIF 112
V+WN M+HG + + ++AI L+ + G++ D VTF+A+L C+H+GL+ ++ F
Sbjct: 380 DLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYF 439
Query: 113 NSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVHSN 148
SME +++ P+ CL MP + ++V+WG L+ +C++H+
Sbjct: 440 YSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNE 499
Query: 149 VRLAKK 154
V +AK+
Sbjct: 500 VDIAKE 505
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111
VTW +I GYAE +++A L ++ASG+K D ++IL C+ SGL+ + I
Sbjct: 281 VTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRI 337
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 24/113 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++ F + +L +C+ S L + + + I K G +DI+V +A I+ Y CG
Sbjct: 113 LFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRD 172
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLY-----KDIIASGVKHDG 89
V+WN M+ G + + A L+ +D+I+ DG
Sbjct: 173 AMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDG 225
>sp|Q3E9N1|PP359_ARATH Pentatricopeptide repeat-containing protein At4g39952,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2
SV=2
Length = 775
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 93/198 (46%), Gaps = 46/198 (23%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ T+L +C SL G+ I I + + ++ + +A I++Y CG
Sbjct: 531 PSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSREL 590
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN MI GY + VE AI+L+ + S VK G TF+A+L+ C+H+GLV
Sbjct: 591 FDAGNQKDAVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACTHAGLV 650
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
++F M H ++VKP CL MP+ D V+WG L+S
Sbjct: 651 EQGKKLFLKM-HQYDVKPNLKHYSCLVDLLSRSGNLEEAESTVMSMPFSPDGVIWGTLLS 709
Query: 142 SCQVHS----NVRLAKKA 155
SC H +R+A++A
Sbjct: 710 SCMTHGEFEMGIRMAERA 727
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 16/111 (14%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------- 54
T+V+SSC+ + ++ LG+ + +VK I V ++ I++Y G
Sbjct: 437 TSVISSCSHIGAVLLGKSLHCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEADT 496
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+TWN MI Y E E+AI+L+ +++ K +T V +L C ++G
Sbjct: 497 NVITWNAMIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTG 547
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
WN M+ GY + + + I L++ I G++ D + ++++ CSH G V
Sbjct: 400 AWNTMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAV 449
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------- 54
+C+ L +L GR + VK+G + FV S+ + Y G
Sbjct: 237 FQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFYSKSGNPSEAYLSFRELGDEDM 296
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+W +I A + +E++ ++ ++ G+ DGV ++ LV
Sbjct: 297 FSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVISCLINELGKMMLV 347
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 92/197 (46%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV----- 55
V P + ++VLS+CA + +L GR++ ++K+ + G+ I++Y CG
Sbjct: 302 VAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAI 361
Query: 56 ------------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TW MI+G+A + Y A L+ +++S V + VTF+A+L+ C+H G
Sbjct: 362 LVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGG 421
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
LV +F SM+ ++PK C+ MP + VVWG L
Sbjct: 422 LVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGAL 481
Query: 140 VSSCQVHSNVRLAKKAA 156
SC +H + L K AA
Sbjct: 482 FGSCLLHKDYELGKYAA 498
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 59/124 (47%), Gaps = 18/124 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG----- 54
V + +VL + K+ + GR + ++ G D+F+GS+ +++Y C
Sbjct: 200 VAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDA 259
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102
VTW +I GY ++ ++ + ++++++ S V + T ++L+ C+H
Sbjct: 260 QKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHV 319
Query: 103 GLVY 106
G ++
Sbjct: 320 GALH 323
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 22/115 (19%)
Query: 1 VYPTQFPFTTVLSSCAKL--SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---- 54
V P++ F +L + KL S+ F Q IVK G +D FV ++ I+ Y + G
Sbjct: 100 VIPSRHTFPPLLKAVFKLRDSNPF---QFHAHIVKFGLDSDPFVRNSLISGYSSSGLFDF 156
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
VTW MI G+ N +A+ + ++ +GV + +T V++L
Sbjct: 157 ASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMKKTGVAANEMTVVSVL 211
>sp|Q9LZ19|PP364_ARATH Pentatricopeptide repeat-containing protein At5g04780
OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2
Length = 635
Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 95/194 (48%), Gaps = 41/194 (21%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV-------- 55
QF ++V+ +C+ L++L G+Q+ I K G+G+++FV S+ +++Y CG
Sbjct: 262 NQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIF 321
Query: 56 ---------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106
WN +I G+A++ ++ + L++ + G+ + VTF ++L+ C H+GLV
Sbjct: 322 SEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVE 381
Query: 107 AEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSS 142
F M + + P C+ +P+ +WG L++S
Sbjct: 382 EGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 441
Query: 143 CQVHSNVRLAKKAA 156
C+V+ N+ LA+ AA
Sbjct: 442 CRVYKNLELAEVAA 455
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 17/115 (14%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
++F ++VLS+C +++ VK +++VG+A +++Y CG
Sbjct: 161 SEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVF 220
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VTW+ M+ GY +N+ E+A+ LY+ ++ + T +++ CS+
Sbjct: 221 ESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSN 275
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 17/106 (16%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
+L CA+ ++ + +I++ D+ + + IN Y CG
Sbjct: 67 ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99
V+WN MI Y N +A+ ++ ++ G K T ++L+ C
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSAC 172
>sp|Q9FGR2|PP436_ARATH Pentatricopeptide repeat-containing protein At5g59600
OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1
Length = 534
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 94/197 (47%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+YP T+L +C L+ + G++I V G + FV SA +++Y CG
Sbjct: 284 LYPNSATIITLLPACTTLAYMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAM 343
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VT+N MI YA + ++A+ L+ + A+G K D +TF AILT CSH+G
Sbjct: 344 ILFRKTPKKTTVTFNSMIFCYANHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHAG 403
Query: 104 LVYAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDL 139
L +F M++ + + P+ C+ M + DL VWG L
Sbjct: 404 LTDLGQNLFLLMQNKYRIVPRLEHYACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGAL 463
Query: 140 VSSCQVHSNVRLAKKAA 156
+++C+ H N+ LA+ AA
Sbjct: 464 LAACRNHGNMELARIAA 480
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 26/153 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
F ++L + L G+ I ++K Y +D F+ S+ I++Y G
Sbjct: 118 FIVPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFIVSSLIDMYSKFGEVGNARKVFSD 177
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
V +N MI GYA N ++A++L KD+ G+K D +T+ A+++ SH
Sbjct: 178 LGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNALISGFSHMRNEEKV 237
Query: 109 VEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141
EI M CL YK D+V W ++S
Sbjct: 238 SEILELM---------CLDGYKPDVVSWTSIIS 261
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 41/192 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T +LS+CA+L +L LG+ + + + + I+V +A I +Y CG
Sbjct: 418 PNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTWN MI GY + ++A++++ +++ SG+ VTF+ +L CSH+GLV
Sbjct: 478 FDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLV 537
Query: 106 YAEVEIFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVS 141
EIFNSM H + +P C+ M + VW L+
Sbjct: 538 KEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLG 597
Query: 142 SCQVHSNVRLAK 153
+C++H + LA+
Sbjct: 598 ACRIHKDTNLAR 609
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 19/115 (16%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG--------------- 54
+L + A+L L LG QI + K G Y +D +V + I++Y CG
Sbjct: 227 ILPAVAELQELRLGMQIHSLATKTGCYSHD-YVLTGFISLYSKCGKIKMGSALFREFRKP 285
Query: 55 --VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V +N MIHGY N E ++SL+K+++ SG + T V+++ H L+YA
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYA 340
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+WN MI GY +N E AISL++++ S + VT IL+ C+ G
Sbjct: 387 SWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLG 434
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--------- 53
P + +S+ + GR I + V DG +++ +GS + +Y
Sbjct: 117 PNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKV 176
Query: 54 --------GVTWNEMIHGYAENEYVEQAISLYKDII-ASGVKHDGVTFVAIL 96
+ WN MI GY +NE ++I +++D+I S + D T + IL
Sbjct: 177 FDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDIL 228
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 42/196 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P T+L SCA LS+L G++I +K+ D+ VGSA +++Y CG
Sbjct: 515 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKV 574
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+TWN +I Y + ++AI L + ++ GVK + VTF+++ CSHSG+V
Sbjct: 575 FDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMV 634
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYK-DDLVVWGDLV 140
+ IF M+ D+ V+P +MP + W L+
Sbjct: 635 DEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLL 694
Query: 141 SSCQVHSNVRLAKKAA 156
+ ++H+N+ + + AA
Sbjct: 695 GASRIHNNLEIGEIAA 710
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 19/122 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCGVT--- 56
V P +F ++VL +C+ L L G+++ +K+G + FVGSA +++YCNC
Sbjct: 298 VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 357
Query: 57 --------------WNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSH 101
WN MI GY++NE+ ++A+ L+ + S G+ + T ++ C
Sbjct: 358 RRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVR 417
Query: 102 SG 103
SG
Sbjct: 418 SG 419
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 18/119 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND-IFVGSAPINIYCNCG----- 54
+ P + F +L + A L + LG+QI + K GYG D + V + +N+Y CG
Sbjct: 93 IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 152
Query: 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+WN +I E E A+ ++ ++ V+ T V+++T CS+
Sbjct: 153 YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSN 211
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 21/131 (16%)
Query: 1 VYPTQFPFTTVLSSCAKL---SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--- 54
V P+ F +V+++C+ L L +G+Q+ ++ G N F+ + + +Y G
Sbjct: 195 VEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLA 253
Query: 55 --------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
VTWN ++ +NE + +A+ ++++ GV+ D T ++L CS
Sbjct: 254 SSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACS 313
Query: 101 HSGLVYAEVEI 111
H ++ E+
Sbjct: 314 HLEMLRTGKEL 324
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 28/118 (23%)
Query: 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------- 54
V+ +C + + I +VK G D FV + +++Y G
Sbjct: 411 VVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRD 470
Query: 55 -VTWNEMIHGYAENEYVEQAISLYKDI------IASG-----VKHDGVTFVAILTPCS 100
VTWN MI GY +E+ E A+ L + ++ G +K + +T + IL C+
Sbjct: 471 LVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCA 528
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT---WNE 59
P+ FPF + L ++ +L R T +D V AP +I+ + + W +
Sbjct: 12 PSIFPFPSQLLPFSRHKHPYLLRATPTSATEDVASA---VSGAP-SIFISQSRSPEWWID 67
Query: 60 MIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
++ + + +A+ Y D+I G+K D F A+L
Sbjct: 68 LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALL 104
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 97/197 (49%), Gaps = 41/197 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P F + +V+++ A+LS + I +++ ++FV +A +++Y CG
Sbjct: 434 VKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIAR 493
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
TWN MI GY + + + A+ L++++ +K +GVTF+++++ CSHSG
Sbjct: 494 LIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSG 553
Query: 104 LVYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDL 139
LV A ++ F M+ ++ ++ MP K + V+G +
Sbjct: 554 LVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAM 613
Query: 140 VSSCQVHSNVRLAKKAA 156
+ +CQ+H NV A+KAA
Sbjct: 614 LGACQIHKNVNFAEKAA 630
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 17/128 (13%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + FT +L C + L +G++I +VK G+ D+F + N+Y C
Sbjct: 131 VEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEAR 190
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN ++ GY++N A+ + K + +K +T V++L S
Sbjct: 191 KVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALR 250
Query: 104 LVYAEVEI 111
L+ EI
Sbjct: 251 LISVGKEI 258
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P+ +VL + + L + +G++I ++ G+ + + + +A +++Y CG
Sbjct: 234 PSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQL 293
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
V+WN MI Y +NE ++A+ +++ ++ GVK V+ + L C+ G
Sbjct: 294 FDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLG 351
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT L +CA L L GR I V+ G ++ V ++ I++YC C
Sbjct: 333 VKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAA 392
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
V+WN MI G+A+N A++ + + + VK D T+V+++T
Sbjct: 393 SMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVIT 446
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 20/124 (16%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+ P +L C+ L L RQIL + K+G + F + ++++C G
Sbjct: 37 EHPAALLLERCSSLKEL---RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFE 93
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V ++ M+ G+A+ +++A+ + + V+ F +L C +
Sbjct: 94 PIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRV 153
Query: 108 EVEI 111
EI
Sbjct: 154 GKEI 157
>sp|Q9M2Y4|PP276_ARATH Pentatricopeptide repeat-containing protein At3g49740
OS=Arabidopsis thaliana GN=PCMP-E84 PE=2 SV=1
Length = 737
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 44/200 (22%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P + +T+LS C SSL LG Q +++ G + +G+A IN+Y CG
Sbjct: 485 ILPDAYTLSTLLSICVSTSSLMLGSQTHAYVLRHGQFKETLIGNALINMYSQCGTIQNSL 544
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHS 102
V+WN +I Y+ + E A++ YK + G V D TF A+L+ CSH+
Sbjct: 545 EVFNQMSEKDVVSWNSLISAYSRHGEGENAVNTYKTMQDEGKVIPDAATFSAVLSACSHA 604
Query: 103 GLVYAEVEIFNSMEHDHEV---------------------KPKCLMPYKDDLV-----VW 136
GLV +EIFNSM H V + + L+ + + VW
Sbjct: 605 GLVEEGLEIFNSMVEFHGVIRNVDHFSCLVDLLGRAGHLDEAESLVKISEKTIGSRVDVW 664
Query: 137 GDLVSSCQVHSNVRLAKKAA 156
L S+C H +++L K A
Sbjct: 665 WALFSACAAHGDLKLGKMVA 684
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 20/113 (17%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ PT F +V+ SC S +G Q+ +K GY V +A + +Y +
Sbjct: 287 LRPTDLTFVSVMGSC---SCAAMGHQVHGLAIKTGYEKYTLVSNATMTMYSSFEDFGAAH 343
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96
VTWN MI Y + + + A+S+YK + GVK D TF ++L
Sbjct: 344 KVFESLEEKDLVTWNTMISSYNQAKLGKSAMSVYKRMHIIGVKPDEFTFGSLL 396
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 17/106 (16%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIH 62
P + +TT+LS+ KL + ++ ++ + +D+ + WN MI
Sbjct: 121 PDVYSWTTLLSASFKLGDIEYAFEVFDKMPER---DDVAI--------------WNAMIT 163
Query: 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108
G E+ Y E ++ L++++ GV+HD F IL+ C + L + +
Sbjct: 164 GCKESGYHETSVELFREMHKLGVRHDKFGFATILSMCDYGSLDFGK 209
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 45/194 (23%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------- 53
V +F F T+LS C SL G+Q+ + ++K G+ V +A I +Y NC
Sbjct: 186 VRHDKFGFATILSMC-DYGSLDFGKQVHSLVIKAGFFIASSVVNALITMYFNCQVVVDAC 244
Query: 54 ------------GVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
VT+N +I G A + ++++ +++ ++ + ++ +TFV+++ CS
Sbjct: 245 LVFEETDVAVRDQVTFNVVIDGLAGFKR-DESLLVFRKMLEASLRPTDLTFVSVMGSCSC 303
Query: 102 SGLVY-------------------AEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVS 141
+ + + A + +++S E D K ++ DLV W ++S
Sbjct: 304 AAMGHQVHGLAIKTGYEKYTLVSNATMTMYSSFE-DFGAAHKVFESLEEKDLVTWNTMIS 362
Query: 142 SCQVHSNVRLAKKA 155
S ++ +L K A
Sbjct: 363 S---YNQAKLGKSA 373
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 42/194 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + T VLS+C++ S G+ + + K GY + V +A I++Y CG
Sbjct: 267 PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLV 326
Query: 55 ----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
V+W MI G A + E+A+ L+ ++ A GV DG++F+++L CSH+GL
Sbjct: 327 FEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGL 386
Query: 105 VYAEVEIFNSMEHDHEVKPK------------------------CLMPYKDDLVVWGDLV 140
+ + F+ M+ + ++P+ C MP +VW L+
Sbjct: 387 IEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLL 446
Query: 141 SSCQVHSNVRLAKK 154
+C H N+ LA++
Sbjct: 447 GACSSHGNIELAEQ 460
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEM 60
V+P F F V+ + SL G Q+ + +K G + +FVG+ I +Y CG
Sbjct: 102 VFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGC----- 156
Query: 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115
VE A ++ ++ + V + A++T C V EIF+ M
Sbjct: 157 ---------VEFARKVFDEMHQPNL----VAWNAVITACFRGNDVAGAREIFDKM 198
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 41/187 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------------ 55
+TVL + + +L +G+ I ++++ G +D+ VG++ I++YC CG
Sbjct: 290 LSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK 349
Query: 56 -----TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
+W MI GY + + +A+ L+ +I SGV+ + +TFV++L CSH+GL
Sbjct: 350 NKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWR 409
Query: 111 IFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVSSCQVH 146
FN+M+ V+P C+ M K D ++W L+++C++H
Sbjct: 410 WFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIH 469
Query: 147 SNVRLAK 153
NV LA+
Sbjct: 470 KNVELAE 476
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 23/124 (18%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+YPT+ F + +C+ L +F G+Q + GY +DIFV SA I +Y CG
Sbjct: 72 LYPTRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDAR 131
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF------VAILT 97
V+W MI GY N A+SL+KD++ D F V++++
Sbjct: 132 KVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVIS 191
Query: 98 PCSH 101
CS
Sbjct: 192 ACSR 195
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/175 (19%), Positives = 76/175 (43%), Gaps = 29/175 (16%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
++ +V+S+C+++ + L I + ++K G+ + VG+ ++ Y G
Sbjct: 179 MFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAV 238
Query: 55 -------------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCS 100
V++N ++ YA++ +A +++ ++ + V + +T +L S
Sbjct: 239 ARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVS 298
Query: 101 HSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155
HSG + I HD ++ M +DD++V ++ V A+KA
Sbjct: 299 HSGALRIGKCI-----HDQVIR----MGLEDDVIVGTSIIDMYCKCGRVETARKA 344
>sp|Q56XI1|PPR25_ARATH Pentatricopeptide repeat-containing protein At1g09410
OS=Arabidopsis thaliana GN=PCMP-H18 PE=2 SV=2
Length = 705
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 42/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V PT ++LS CA L+SL G+Q+ ++V+ + D++V S + +Y CG
Sbjct: 327 VRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSK 386
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHS 102
+ WN +I GYA + E+A+ ++ ++ SG K + VTFVA L+ CS++
Sbjct: 387 LIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYA 446
Query: 103 GLVYAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGD 138
G+V ++I+ SME VKP C+ M + D VWG
Sbjct: 447 GMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGS 506
Query: 139 LVSSCQVHSNVRLAK 153
L+ +C+ HS + +A+
Sbjct: 507 LLGACRTHSQLDVAE 521
>sp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g25970
OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2
Length = 701
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 76/137 (55%), Gaps = 18/137 (13%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ F+ +L SC+ L++L LG+QI K G+ ++ FV S+ I +Y CG
Sbjct: 409 YAFSALLRSCSDLATLQLGQQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQ 468
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V WN MI GYA++ + ++ L+ + VK D VTF AILT CSH+GL+
Sbjct: 469 ISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQE 528
Query: 108 EVEIFNSMEHDHEVKPK 124
+E+ N ME ++++P+
Sbjct: 529 GLELLNLMEPVYKIQPR 545
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC------------ 53
+ F+ +L A + LG Q+ ++K GY +++VGS+ +++Y C
Sbjct: 102 YSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCERVEDAFEAFKE 161
Query: 54 -----GVTWNEMIHGYAENEYVEQAISLYKDI-IASGVKHDGVTFVAILT 97
V+WN +I G+ + ++ A L + + + V D TF +LT
Sbjct: 162 ISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLLT 211
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 23/119 (19%)
Query: 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------------VTWNEMIHGY 64
L +Q+ +++K G ++I + +A I+ Y +CG ++WN MI G+
Sbjct: 221 LLKQVHAKVLKLGLQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKDLISWNSMIAGF 280
Query: 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP 123
+++E E A L+ + V+ D T+ +L+ CS E +IF H +K
Sbjct: 281 SKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGE-----EHQIFGKSLHGMVIKK 334
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
+ +T +LS+C+ G+ + ++K G +A I++Y
Sbjct: 306 YTYTGLLSACSGEEHQIFGKSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLF 365
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
++WN +I G+A+ E A+ + + +S +K D F A+L CS
Sbjct: 366 ESLKSKDLISWNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCS 419
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 15 CAKLSSLFLGRQILTRIVKDG---YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVE 71
C +S +++ +IL +K G Y N +F + V+WN MI GY +E
Sbjct: 29 CGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRD-----SVSWNTMISGYTSCGKLE 83
Query: 72 QAISLYKDIIASGVKHDGVTFVAIL 96
A L+ + SG DG +F +L
Sbjct: 84 DAWCLFTCMKRSGSDVDGYSFSRLL 108
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P ++ F VL++CA L++ LG+Q+ + + G+ F S+ +++Y CG
Sbjct: 317 PNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHV 376
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V+W +I G A+N ++A+ + ++ SG K D VTFV +L+ C+H+GLV
Sbjct: 377 VDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLV 436
Query: 106 YAEVEIFNSMEHDHEVKP-----KCL-------------------MPYKDDLVVWGDLVS 141
+E F S+ H + CL MP K +W ++
Sbjct: 437 EKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLG 496
Query: 142 SCQVHSNVRLAKKAA 156
C + N+ LA++AA
Sbjct: 497 GCSTYGNIDLAEEAA 511
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 17/94 (18%)
Query: 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAE 66
G++I IV+ G +D + S+ +++Y CG V+W MI Y +
Sbjct: 237 GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFK 296
Query: 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100
+ + SL+ +++ S + + TF +L C+
Sbjct: 297 SSRWREGFSLFSELVGSCERPNEYTFAGVLNACA 330
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 21/112 (18%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------- 54
P + ++ C++ +L G+++ I G+ I + + + +Y CG
Sbjct: 83 PPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKV 142
Query: 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97
+WN M++GYAE +E+A L+ ++ + D ++ A++T
Sbjct: 143 FDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEM----TEKDSYSWTAMVT 190
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 41/190 (21%)
Query: 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------- 54
++++ +CA L++ GRQ+ ++ G+ + +F+ +A I++Y C
Sbjct: 241 LSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMR 300
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVE 110
V+W +I G A++ E+A++LY D+++ GVK + VTFV ++ CSH G V E
Sbjct: 301 HRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRE 360
Query: 111 IFNSMEHDHEVKPK-----CL-------------------MPYKDDLVVWGDLVSSCQVH 146
+F SM D+ ++P CL MP+ D W L+S+C+
Sbjct: 361 LFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQ 420
Query: 147 SNVRLAKKAA 156
++ + A
Sbjct: 421 GRGQMGIRIA 430
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 21/136 (15%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F F+ ++ +CA L S+ GRQ+ + Y ND V S+ +++Y CG
Sbjct: 101 LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAK 160
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++W M+ GYA++ E+A+ L++ + + ++ A+++ SG
Sbjct: 161 AVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNL----YSWTALISGFVQSG 216
Query: 104 LVYAEVEIFNSMEHDH 119
+F M +
Sbjct: 217 KGLEAFSVFTEMRRER 232
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 91/195 (46%), Gaps = 41/195 (21%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV------- 55
P + F+ + SCA L + G+Q +++K G+ + + G+A I +Y CGV
Sbjct: 415 PCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQV 474
Query: 56 ----------TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
+WN +I ++ + +A+ +Y++++ G++ D +T + +LT CSH+GLV
Sbjct: 475 FRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLV 534
Query: 106 YAEVEIFNSMEHDHEVKPKC------------------------LMPYKDDLVVWGDLVS 141
+ F+SME + + P +P+K +W L+S
Sbjct: 535 DQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLS 594
Query: 142 SCQVHSNVRLAKKAA 156
C+VH N+ L AA
Sbjct: 595 GCRVHGNMELGIIAA 609
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 27 ILTRIVKDGY---GNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83
++T VK+GY G ++ G N+ V +N MI GY + ++A+ + + +++S
Sbjct: 225 MMTGYVKNGYFDLGEELLEGMDD-NMKL---VAYNAMISGYVNRGFYQEALEMVRRMVSS 280
Query: 84 GVKHDGVTFVAILTPCSHSGLV 105
G++ D T+ +++ C+ +GL+
Sbjct: 281 GIELDEFTYPSVIRACATAGLL 302
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/131 (17%), Positives = 64/131 (48%), Gaps = 22/131 (16%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
+F + +V+ +CA L LG+Q+ +++ + F S +++Y CG
Sbjct: 286 EFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSL-VSLYYKCGKFDEARAIFE 344
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+WN ++ GY + ++ +A ++K++ + ++++ +++ + +G
Sbjct: 345 KMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI----LSWMIMISGLAENGFGEE 400
Query: 108 EVEIFNSMEHD 118
+++F+ M+ +
Sbjct: 401 GLKLFSCMKRE 411
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 43/193 (22%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
Q T+VL +C L+ L LG Q IVK Y D+ + +A +++YC CG
Sbjct: 260 QATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFN 317
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
+TW+ MI G A+N Y ++A+ L++ + +SG K + +T V +L CSH+GL+
Sbjct: 318 QMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLED 377
Query: 108 EVEIFNSM----------EH--------------DHEVKPKCLMPYKDDLVVWGDLVSSC 143
F SM EH D VK M + D V W L+ +C
Sbjct: 378 GWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGAC 437
Query: 144 QVHSNVRLAKKAA 156
+V N+ LA+ AA
Sbjct: 438 RVQRNMVLAEYAA 450
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 31/157 (19%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P + +++VL SC +S + R + I+K+G +D+FV SA I+++ G
Sbjct: 158 VRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDAL 214
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
+ WN +I G+A+N + A+ L+K + +G + T ++L C +G
Sbjct: 215 SVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRAC--TG 272
Query: 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140
L E+ + H H VK Y DL++ LV
Sbjct: 273 LALLELGM---QAHVHIVK------YDQDLILNNALV 300
>sp|Q9SJK9|PP189_ARATH Pentatricopeptide repeat-containing protein At2g36980,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E73 PE=2
SV=1
Length = 625
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 17/134 (12%)
Query: 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------- 54
F + VL +C+ L+ L G+ I ++ G+ +VG+A +N+Y CG
Sbjct: 337 HFAYGAVLHACSGLALLGHGKMIHGCLIHCGFQGYAYVGNALVNLYAKCGDIKEADRAFG 396
Query: 55 -------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107
V+WN M+ + + +QA+ LY ++IASG+K D VTF+ +LT CSHSGLV
Sbjct: 397 DIANKDLVSWNTMLFAFGVHGLADQALKLYDNMIASGIKPDNVTFIGLLTTCSHSGLVEE 456
Query: 108 EVEIFNSMEHDHEV 121
IF SM D+ +
Sbjct: 457 GCMIFESMVKDYRI 470
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 52/159 (32%)
Query: 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVT------ 56
P + FT +LS+CA L ++ GR+I + +++ G+ + V ++ I++Y C T
Sbjct: 68 PDDYSFTAILSTCASLGNVKFGRKIQSLVIRSGFCASLPVNNSLIDMYGKCSDTLSANKV 127
Query: 57 --------------------------------------------WNEMIHGYAENEYVEQ 72
WN MI G+A +E
Sbjct: 128 FRDMCCDSRNEVTWCSLLFAYMNAEQFEAALDVFVEMPKRVAFAWNIMISGHAHCGKLES 187
Query: 73 AISLYKDIIASGVKHDGVTFVAILTPCS--HSGLVYAEV 109
+SL+K+++ S K D TF +++ CS S +VY +
Sbjct: 188 CLSLFKEMLESEFKPDCYTFSSLMNACSADSSNVVYGRM 226
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
VTW MI GY N EQA+ + +++ SGV D + A+L CS L+
Sbjct: 303 VTWTTMITGYGRNGDGEQALRFFVEMMKSGVDSDHFAYGAVLHACSGLALL 353
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
V WN M+ Y+ ++AI+L+ + S K D +F AIL+ C+ G V
Sbjct: 36 VAWNTMLTSYSRLGLHQEAIALFTQLRFSDAKPDDYSFTAILSTCASLGNV 86
>sp|Q9LIE7|PP246_ARATH Pentatricopeptide repeat-containing protein At3g22150,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2
SV=1
Length = 820
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 42/195 (21%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P ++L +C+++ S+ LG+Q+ ++ ++FV SA +++Y G
Sbjct: 517 IRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAE 576
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
VT+ MI GY ++ E+AISL+ + SG+K D +TFVA+L+ CS+SG
Sbjct: 577 DMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSG 636
Query: 104 LVYAEVEIFNSMEHDHEVKP-------------------------KCLMPYKDDLVVWGD 138
L+ ++IF M + ++P K L + +WG
Sbjct: 637 LIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGS 696
Query: 139 LVSSCQVHSNVRLAK 153
L+ SC++H + LA+
Sbjct: 697 LLGSCKLHGELELAE 711
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 18/115 (15%)
Query: 9 TTVLSSCAKLSSLFLGRQILTRIVKDG--------YGNDIFVGSAPINI----YCNCG-- 54
T +LS+ + L + +G+Q +++ G Y D++ S I I + G
Sbjct: 423 TALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSYLIDMYSKSGLIRISQKLFEGSGYA 482
Query: 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105
TWN MI GY +N + E+ +++ ++ ++ + VT +IL CS G V
Sbjct: 483 ERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSV 537
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 22/113 (19%)
Query: 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------- 54
FP ++ S K +++F G L + D Y D+FV S+ I++Y G
Sbjct: 221 FPAVSISRSIKK-ANVFYG---LMLKLGDEYVKDLFVVSSAISMYAELGDIESSRRVFDS 276
Query: 55 ------VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCS 100
WN MI Y +N+ + ++I L+ + I S + D VT++ + S
Sbjct: 277 CVERNIEVWNTMIGVYVQNDCLVESIELFLEAIGSKEIVSDEVTYLLAASAVS 329
>sp|Q9LSL8|PP446_ARATH Pentatricopeptide repeat-containing protein At5g65570
OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1
Length = 738
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 39/193 (20%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
+ P F ++ L C+ L+ GRQI + K G+ D + GS I++Y CG
Sbjct: 364 IKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMAR 423
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103
++ N MI+ YA+N + +A+ L++ +I G++ + VT +++L C++S
Sbjct: 424 LVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVLLACNNSR 483
Query: 104 LVYAEVEIFNSMEHD----------------------HEVKPKCLMPYKDDLVVWGDLVS 141
LV E+F+S D E + DLV+W L+S
Sbjct: 484 LVEEGCELFDSFRKDKIMLTNDHYACMVDLLGRAGRLEEAEMLTTEVINPDLVLWRTLLS 543
Query: 142 SCQVHSNVRLAKK 154
+C+VH V +A++
Sbjct: 544 ACKVHRKVEMAER 556
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------ 54
V P ++ + +VL SC L + G+ I +VK G+ + + ++ + +Y C
Sbjct: 263 VQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSL 322
Query: 55 -----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101
V+W +I G +N E A+ ++ ++ +K + T + L CS+
Sbjct: 323 RVFKCIEYPNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSN 380
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 18/118 (15%)
Query: 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------- 54
T F+ +L C S+ + I ++K G+ +I GS ++ CG
Sbjct: 64 TTHNFSQLLRQCIDERSISGIKTIQAHMLKSGFPAEI-SGSKLVDASLKCGDIDYARQVF 122
Query: 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104
VTWN +I ++ ++A+ +Y+ +I + V D T ++ S L
Sbjct: 123 DGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFSDLSL 180
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,112,561
Number of Sequences: 539616
Number of extensions: 2262666
Number of successful extensions: 6918
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 4867
Number of HSP's gapped (non-prelim): 1433
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)