Query 041561
Match_columns 156
No_of_seqs 129 out of 1276
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 08:24:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.3E-32 2.7E-37 222.7 15.0 155 1-155 321-516 (697)
2 PLN03218 maturation of RBCL 1; 100.0 2.5E-30 5.3E-35 214.7 15.8 152 3-154 435-635 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 1.3E-30 2.8E-35 215.1 13.8 155 1-155 485-679 (857)
4 PLN03218 maturation of RBCL 1; 100.0 5.9E-30 1.3E-34 212.4 16.0 154 1-155 538-741 (1060)
5 PLN03077 Protein ECB2; Provisi 100.0 7E-29 1.5E-33 204.8 15.0 145 1-154 284-445 (857)
6 PLN03081 pentatricopeptide (PP 100.0 1.2E-28 2.5E-33 199.7 14.9 152 2-155 186-413 (697)
7 PF13041 PPR_2: PPR repeat fam 99.7 5.8E-17 1.3E-21 88.7 6.2 47 55-101 4-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 4.9E-17 1.1E-21 89.0 5.1 50 3-52 1-50 (50)
9 PF12854 PPR_1: PPR repeat 99.3 7.3E-12 1.6E-16 62.6 3.5 33 83-115 1-33 (34)
10 KOG4422 Uncharacterized conser 99.2 2.6E-10 5.6E-15 86.2 10.9 136 6-155 117-295 (625)
11 KOG4422 Uncharacterized conser 99.2 1.7E-10 3.8E-15 87.1 9.4 122 3-151 205-330 (625)
12 PF12854 PPR_1: PPR repeat 99.2 3.8E-11 8.2E-16 60.0 3.5 34 34-81 1-34 (34)
13 PRK11788 tetratricopeptide rep 99.2 1.5E-09 3.2E-14 82.7 13.4 139 5-154 141-303 (389)
14 TIGR00756 PPR pentatricopeptid 99.1 3.6E-10 7.8E-15 56.4 4.2 35 55-89 1-35 (35)
15 PRK11788 tetratricopeptide rep 99.0 3.4E-08 7.5E-13 75.1 14.4 109 7-115 71-206 (389)
16 PF13812 PPR_3: Pentatricopept 98.9 2E-09 4.3E-14 53.5 4.3 33 55-87 2-34 (34)
17 TIGR00756 PPR pentatricopeptid 98.8 5.1E-09 1.1E-13 52.1 3.7 35 6-40 1-35 (35)
18 PF13812 PPR_3: Pentatricopept 98.8 7.7E-09 1.7E-13 51.3 3.8 34 5-38 1-34 (34)
19 PF01535 PPR: PPR repeat; Int 98.8 7.7E-09 1.7E-13 50.2 3.8 31 55-85 1-31 (31)
20 TIGR02917 PEP_TPR_lipo putativ 98.8 3.2E-07 6.9E-12 75.7 14.8 58 57-115 672-729 (899)
21 KOG4318 Bicoid mRNA stability 98.8 5.3E-08 1.2E-12 79.2 8.7 151 1-153 21-291 (1088)
22 TIGR02917 PEP_TPR_lipo putativ 98.7 7.6E-07 1.6E-11 73.5 15.5 136 6-153 568-723 (899)
23 PF01535 PPR: PPR repeat; Int 98.6 1.1E-07 2.3E-12 46.0 3.4 31 6-36 1-31 (31)
24 PF13429 TPR_15: Tetratricopep 98.5 1.1E-06 2.4E-11 64.3 8.2 142 3-155 108-270 (280)
25 PF06239 ECSIT: Evolutionarily 98.4 3E-06 6.6E-11 59.3 9.3 104 4-107 46-156 (228)
26 TIGR02521 type_IV_pilW type IV 98.4 3.8E-05 8.2E-10 53.4 14.4 137 7-154 33-190 (234)
27 PF08579 RPM2: Mitochondrial r 98.4 2.6E-06 5.7E-11 53.6 7.4 87 9-101 29-116 (120)
28 TIGR02521 type_IV_pilW type IV 98.4 5.6E-05 1.2E-09 52.6 14.6 139 5-155 65-225 (234)
29 PF08579 RPM2: Mitochondrial r 98.2 2E-05 4.3E-10 49.7 8.3 81 56-145 27-116 (120)
30 PF10037 MRP-S27: Mitochondria 98.2 2E-05 4.3E-10 60.9 10.0 119 5-146 66-186 (429)
31 PF13429 TPR_15: Tetratricopep 98.2 7.2E-06 1.6E-10 60.1 7.1 87 56-154 148-235 (280)
32 PF05843 Suf: Suppressor of fo 98.1 4.4E-05 9.6E-10 56.2 9.8 126 6-155 2-129 (280)
33 PRK15174 Vi polysaccharide exp 98.0 0.00036 7.8E-09 57.2 14.8 58 57-115 287-344 (656)
34 PF10037 MRP-S27: Mitochondria 98.0 3.9E-05 8.5E-10 59.3 7.8 83 6-102 104-186 (429)
35 PF06239 ECSIT: Evolutionarily 97.9 0.00015 3.2E-09 51.0 9.2 88 55-151 48-156 (228)
36 PRK15174 Vi polysaccharide exp 97.9 0.00084 1.8E-08 55.1 14.7 100 13-115 84-203 (656)
37 PRK12370 invasion protein regu 97.9 0.00083 1.8E-08 54.0 14.3 108 6-115 339-467 (553)
38 KOG4318 Bicoid mRNA stability 97.9 4.8E-05 1E-09 62.6 6.8 90 2-108 201-290 (1088)
39 TIGR00990 3a0801s09 mitochondr 97.9 0.0011 2.4E-08 53.9 14.6 135 7-154 333-488 (615)
40 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0011 2.4E-08 51.0 12.7 116 9-154 173-289 (395)
41 PRK10747 putative protoheme IX 97.8 0.0011 2.3E-08 51.2 12.5 119 6-155 264-383 (398)
42 COG3071 HemY Uncharacterized e 97.7 0.0028 6.1E-08 48.1 13.5 141 4-155 186-383 (400)
43 PF12921 ATP13: Mitochondrial 97.7 0.00024 5.3E-09 46.0 6.9 65 88-155 1-74 (126)
44 PRK09782 bacteriophage N4 rece 97.7 0.0032 6.9E-08 53.9 14.8 46 68-115 590-635 (987)
45 TIGR00990 3a0801s09 mitochondr 97.7 0.0036 7.8E-08 51.0 14.6 146 7-154 367-563 (615)
46 PRK10747 putative protoheme IX 97.6 0.0041 8.8E-08 48.1 14.1 129 15-155 128-285 (398)
47 PF04733 Coatomer_E: Coatomer 97.6 0.0017 3.7E-08 48.1 11.4 88 55-155 132-223 (290)
48 PRK09782 bacteriophage N4 rece 97.6 0.0049 1.1E-07 52.8 15.4 139 4-155 541-699 (987)
49 PF12921 ATP13: Mitochondrial 97.6 0.00049 1.1E-08 44.6 7.2 99 4-144 1-99 (126)
50 KOG3941 Intermediate in Toll s 97.6 0.00093 2E-08 49.0 9.1 87 19-105 86-174 (406)
51 cd00189 TPR Tetratricopeptide 97.6 0.00084 1.8E-08 39.3 7.5 89 56-155 2-90 (100)
52 TIGR00540 hemY_coli hemY prote 97.5 0.005 1.1E-07 47.7 13.5 143 4-155 186-392 (409)
53 KOG1840 Kinesin light chain [C 97.5 0.0016 3.4E-08 51.7 10.7 146 6-155 284-472 (508)
54 PF09976 TPR_21: Tetratricopep 97.5 0.012 2.5E-07 38.9 14.2 125 7-155 14-140 (145)
55 PRK12370 invasion protein regu 97.5 0.007 1.5E-07 48.8 13.6 127 17-155 316-463 (553)
56 PF14559 TPR_19: Tetratricopep 97.4 0.001 2.2E-08 37.8 6.5 64 65-140 2-65 (68)
57 PF04733 Coatomer_E: Coatomer 97.4 0.0051 1.1E-07 45.6 11.1 120 6-149 132-251 (290)
58 COG5010 TadD Flp pilus assembl 97.3 0.01 2.2E-07 42.8 11.5 121 9-156 104-225 (257)
59 PRK10049 pgaA outer membrane p 97.3 0.012 2.6E-07 49.3 13.8 130 14-155 246-415 (765)
60 KOG1126 DNA-binding cell divis 97.3 0.001 2.2E-08 53.3 7.0 128 11-153 359-509 (638)
61 PRK10049 pgaA outer membrane p 97.3 0.017 3.6E-07 48.5 14.5 131 10-154 20-171 (765)
62 TIGR02552 LcrH_SycD type III s 97.3 0.0079 1.7E-07 38.8 10.1 96 6-117 18-113 (135)
63 PRK11447 cellulose synthase su 97.3 0.011 2.4E-07 51.7 13.3 92 55-155 638-733 (1157)
64 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.015 3.3E-07 36.2 10.8 99 7-118 4-105 (119)
65 PRK14574 hmsH outer membrane p 97.2 0.021 4.5E-07 48.2 14.2 123 16-153 45-189 (822)
66 TIGR00540 hemY_coli hemY prote 97.2 0.036 7.7E-07 43.0 14.5 25 131-155 261-285 (409)
67 PRK15359 type III secretion sy 97.2 0.0068 1.5E-07 40.1 9.1 85 60-155 30-114 (144)
68 PRK15359 type III secretion sy 97.2 0.01 2.2E-07 39.2 9.8 93 8-116 27-119 (144)
69 PRK11447 cellulose synthase su 97.1 0.023 5.1E-07 49.7 14.2 140 4-155 61-203 (1157)
70 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.011 2.4E-07 36.9 9.3 93 56-155 4-98 (119)
71 PRK11189 lipoprotein NlpI; Pro 97.0 0.04 8.7E-07 40.9 12.9 74 8-82 67-160 (296)
72 PRK15179 Vi polysaccharide bio 97.0 0.024 5.3E-07 46.9 12.6 122 5-154 86-209 (694)
73 cd05804 StaR_like StaR_like; a 97.0 0.058 1.3E-06 40.6 13.8 131 14-155 52-208 (355)
74 COG4783 Putative Zn-dependent 97.0 0.021 4.6E-07 44.6 11.2 112 16-154 317-429 (484)
75 PF12895 Apc3: Anaphase-promot 97.0 0.0026 5.6E-08 37.9 5.2 77 67-155 2-80 (84)
76 PF12895 Apc3: Anaphase-promot 97.0 0.0021 4.6E-08 38.3 4.6 80 18-114 2-83 (84)
77 PRK10370 formate-dependent nit 96.9 0.039 8.5E-07 38.5 11.2 100 3-118 71-173 (198)
78 TIGR02552 LcrH_SycD type III s 96.9 0.016 3.5E-07 37.3 8.7 86 58-154 21-106 (135)
79 cd00189 TPR Tetratricopeptide 96.9 0.014 3E-07 33.8 7.9 92 8-115 3-94 (100)
80 PRK14574 hmsH outer membrane p 96.9 0.049 1.1E-06 46.1 13.3 90 12-115 299-393 (822)
81 KOG1914 mRNA cleavage and poly 96.8 0.024 5.1E-07 45.1 10.4 113 6-118 367-501 (656)
82 KOG2003 TPR repeat-containing 96.8 0.044 9.5E-07 43.0 11.7 103 36-150 588-711 (840)
83 PF03704 BTAD: Bacterial trans 96.6 0.034 7.5E-07 36.5 8.9 100 16-116 17-123 (146)
84 PF12569 NARP1: NMDA receptor- 96.6 0.15 3.3E-06 40.9 13.7 26 10-35 43-68 (517)
85 COG2956 Predicted N-acetylgluc 96.6 0.036 7.8E-07 41.5 9.4 113 19-156 49-164 (389)
86 PF13432 TPR_16: Tetratricopep 96.5 0.012 2.5E-07 33.1 5.4 56 61-117 4-59 (65)
87 PRK02603 photosystem I assembl 96.5 0.1 2.2E-06 35.3 11.0 116 7-149 37-167 (172)
88 COG3071 HemY Uncharacterized e 96.5 0.26 5.7E-06 37.8 14.5 91 55-155 188-285 (400)
89 KOG1915 Cell cycle control pro 96.5 0.078 1.7E-06 41.8 10.9 124 18-155 86-229 (677)
90 PF04840 Vps16_C: Vps16, C-ter 96.4 0.041 8.9E-07 41.4 9.1 107 7-156 179-285 (319)
91 CHL00033 ycf3 photosystem I as 96.4 0.071 1.5E-06 35.9 9.6 89 55-153 36-133 (168)
92 TIGR03302 OM_YfiO outer membra 96.4 0.2 4.3E-06 35.5 12.5 78 68-155 129-225 (235)
93 PF09976 TPR_21: Tetratricopep 96.4 0.05 1.1E-06 35.8 8.5 88 13-114 56-143 (145)
94 PF12688 TPR_5: Tetratrico pep 96.4 0.072 1.6E-06 34.2 8.8 88 61-155 8-97 (120)
95 PRK10370 formate-dependent nit 96.4 0.2 4.3E-06 35.0 12.5 89 55-154 74-165 (198)
96 KOG1155 Anaphase-promoting com 96.4 0.098 2.1E-06 41.0 10.8 133 17-154 274-453 (559)
97 COG5010 TadD Flp pilus assembl 96.3 0.21 4.6E-06 36.2 11.8 90 55-155 101-190 (257)
98 KOG0495 HAT repeat protein [RN 96.3 0.34 7.3E-06 39.9 13.9 136 7-155 518-673 (913)
99 PRK11189 lipoprotein NlpI; Pro 96.3 0.19 4.2E-06 37.3 11.9 140 4-154 97-257 (296)
100 PF05843 Suf: Suppressor of fo 96.2 0.028 6.1E-07 41.4 7.3 89 56-155 3-92 (280)
101 KOG1126 DNA-binding cell divis 96.2 0.057 1.2E-06 43.7 9.1 137 4-154 420-612 (638)
102 smart00299 CLH Clathrin heavy 96.2 0.19 4E-06 32.8 12.4 116 6-145 8-137 (140)
103 PLN03088 SGT1, suppressor of 96.2 0.13 2.8E-06 39.3 10.7 87 14-116 11-97 (356)
104 PF03704 BTAD: Bacterial trans 96.1 0.053 1.1E-06 35.6 7.3 71 8-93 65-140 (146)
105 PF12688 TPR_5: Tetratrico pep 96.0 0.21 4.6E-06 32.0 9.8 105 14-145 10-118 (120)
106 KOG3081 Vesicle coat complex C 95.9 0.1 2.2E-06 38.2 8.6 48 68-116 187-234 (299)
107 PF12569 NARP1: NMDA receptor- 95.9 0.4 8.6E-06 38.6 12.7 125 7-154 196-326 (517)
108 PF14559 TPR_19: Tetratricopep 95.9 0.04 8.6E-07 31.0 5.4 63 16-95 2-64 (68)
109 PRK02603 photosystem I assembl 95.9 0.14 3.1E-06 34.6 9.0 84 55-149 36-122 (172)
110 PLN03088 SGT1, suppressor of 95.8 0.1 2.2E-06 39.8 9.0 83 62-155 10-92 (356)
111 KOG1070 rRNA processing protei 95.8 0.32 7E-06 43.1 12.3 138 7-154 1532-1692(1710)
112 CHL00033 ycf3 photosystem I as 95.8 0.33 7.2E-06 32.6 10.9 93 7-112 37-136 (168)
113 PF09295 ChAPs: ChAPs (Chs5p-A 95.8 0.11 2.3E-06 40.3 8.9 86 57-156 172-257 (395)
114 PF13424 TPR_12: Tetratricopep 95.7 0.04 8.7E-07 32.0 5.1 61 55-115 6-72 (78)
115 PF13432 TPR_16: Tetratricopep 95.7 0.061 1.3E-06 30.0 5.6 55 13-82 5-59 (65)
116 COG5107 RNA14 Pre-mRNA 3'-end 95.6 0.14 2.9E-06 40.3 8.7 118 5-149 397-518 (660)
117 KOG2003 TPR repeat-containing 95.6 0.25 5.5E-06 38.9 10.0 134 17-155 502-682 (840)
118 KOG3616 Selective LIM binding 95.5 0.11 2.4E-06 43.3 8.3 25 11-35 738-762 (1636)
119 KOG3941 Intermediate in Toll s 95.5 0.16 3.4E-06 37.7 8.4 87 55-150 68-175 (406)
120 KOG1840 Kinesin light chain [C 95.5 0.55 1.2E-05 37.7 11.9 147 6-155 200-389 (508)
121 KOG1129 TPR repeat-containing 95.5 0.25 5.4E-06 37.4 9.3 151 2-154 253-450 (478)
122 PRK10803 tol-pal system protei 95.4 0.31 6.6E-06 35.7 9.7 94 55-155 144-239 (263)
123 KOG1915 Cell cycle control pro 95.4 0.2 4.2E-06 39.7 9.0 100 17-145 153-252 (677)
124 PF13424 TPR_12: Tetratricopep 95.4 0.073 1.6E-06 30.9 5.4 66 6-81 6-73 (78)
125 cd05804 StaR_like StaR_like; a 95.3 0.3 6.4E-06 36.7 9.8 88 13-115 122-212 (355)
126 PRK15179 Vi polysaccharide bio 95.2 0.35 7.5E-06 40.3 10.5 96 6-118 121-217 (694)
127 KOG1070 rRNA processing protei 95.2 1 2.2E-05 40.2 13.2 145 6-155 1459-1656(1710)
128 cd00923 Cyt_c_Oxidase_Va Cytoc 95.2 0.11 2.4E-06 32.0 5.6 64 69-142 22-85 (103)
129 PF02284 COX5A: Cytochrome c o 95.2 0.087 1.9E-06 32.7 5.2 71 62-142 16-88 (108)
130 COG2956 Predicted N-acetylgluc 95.0 0.38 8.2E-06 36.3 9.1 80 63-153 189-269 (389)
131 PF13371 TPR_9: Tetratricopept 94.8 0.19 4.2E-06 28.5 6.0 55 62-117 3-57 (73)
132 KOG3081 Vesicle coat complex C 94.8 0.79 1.7E-05 33.7 10.0 108 13-153 116-227 (299)
133 KOG2047 mRNA splicing factor [ 94.7 0.55 1.2E-05 38.6 9.9 46 7-54 250-295 (835)
134 PRK10153 DNA-binding transcrip 94.7 1 2.2E-05 36.3 11.6 109 3-115 335-479 (517)
135 KOG2076 RNA polymerase III tra 94.6 0.87 1.9E-05 38.5 11.1 120 11-155 383-505 (895)
136 KOG4626 O-linked N-acetylgluco 94.6 0.31 6.7E-06 39.9 8.3 27 7-33 118-144 (966)
137 TIGR03302 OM_YfiO outer membra 94.4 1.2 2.7E-05 31.4 11.2 112 7-118 72-232 (235)
138 KOG3616 Selective LIM binding 94.2 0.33 7.1E-06 40.7 7.8 106 7-155 767-872 (1636)
139 COG3063 PilF Tfp pilus assembl 94.2 1.5 3.2E-05 31.6 12.6 104 11-115 41-165 (250)
140 KOG2053 Mitochondrial inherita 94.0 0.58 1.2E-05 39.6 9.0 77 66-154 55-131 (932)
141 KOG4626 O-linked N-acetylgluco 94.0 2 4.4E-05 35.5 11.6 27 7-33 322-348 (966)
142 PF13414 TPR_11: TPR repeat; P 93.9 0.34 7.4E-06 27.2 5.7 59 56-115 5-64 (69)
143 PF00637 Clathrin: Region in C 93.9 0.095 2.1E-06 34.3 3.6 118 9-149 11-141 (143)
144 PRK10803 tol-pal system protei 93.7 1.8 3.9E-05 31.7 10.3 99 7-118 145-246 (263)
145 PF09205 DUF1955: Domain of un 93.7 1.3 2.8E-05 29.2 9.0 98 17-115 14-146 (161)
146 PF04840 Vps16_C: Vps16, C-ter 93.6 0.85 1.8E-05 34.4 8.7 82 55-155 178-259 (319)
147 KOG2047 mRNA splicing factor [ 93.5 2.3 5E-05 35.2 11.1 97 55-155 139-270 (835)
148 COG3629 DnrI DNA-binding trans 93.3 2.6 5.5E-05 31.3 11.5 98 40-142 137-236 (280)
149 PRK15363 pathogenicity island 93.2 1.3 2.9E-05 29.8 8.2 88 15-118 45-132 (157)
150 KOG2376 Signal recognition par 93.1 2.4 5.1E-05 34.6 10.6 118 10-154 381-512 (652)
151 KOG1128 Uncharacterized conser 93.1 1.1 2.4E-05 37.2 9.0 117 13-154 406-574 (777)
152 KOG0985 Vesicle coat protein c 93.1 1.7 3.7E-05 37.9 10.2 126 4-153 1132-1269(1666)
153 PF13414 TPR_11: TPR repeat; P 92.9 0.83 1.8E-05 25.5 6.2 63 5-82 3-66 (69)
154 PRK15363 pathogenicity island 92.8 1.1 2.4E-05 30.2 7.4 82 61-154 42-124 (157)
155 PF07079 DUF1347: Protein of u 92.8 0.43 9.3E-06 37.6 6.1 125 17-146 18-180 (549)
156 PRK14720 transcript cleavage f 92.8 2.5 5.5E-05 36.4 11.0 109 4-116 30-176 (906)
157 KOG3785 Uncharacterized conser 92.5 1.5 3.3E-05 33.7 8.5 85 59-154 364-449 (557)
158 PF13762 MNE1: Mitochondrial s 92.4 2.2 4.8E-05 28.4 8.9 84 55-147 40-129 (145)
159 PF13371 TPR_9: Tetratricopept 92.4 1.2 2.6E-05 25.1 6.4 57 13-84 3-59 (73)
160 KOG1155 Anaphase-promoting com 92.3 4.7 0.0001 32.1 11.1 94 55-154 433-528 (559)
161 KOG0985 Vesicle coat protein c 92.1 6.2 0.00013 34.7 12.2 83 55-154 1105-1187(1666)
162 PF13176 TPR_7: Tetratricopept 92.0 0.37 8E-06 23.6 3.4 26 56-81 1-26 (36)
163 PF14938 SNAP: Soluble NSF att 91.9 3.8 8.3E-05 30.1 10.3 139 10-154 60-217 (282)
164 PF13762 MNE1: Mitochondrial s 91.9 2.6 5.6E-05 28.0 8.9 92 8-108 42-134 (145)
165 PLN03098 LPA1 LOW PSII ACCUMUL 91.8 1 2.2E-05 35.5 7.0 92 55-149 76-177 (453)
166 PF07035 Mic1: Colon cancer-as 91.3 3.3 7.2E-05 28.2 9.1 29 26-54 15-43 (167)
167 PF13170 DUF4003: Protein of u 91.2 0.76 1.7E-05 34.3 5.7 67 70-142 78-150 (297)
168 KOG3785 Uncharacterized conser 91.2 0.62 1.4E-05 35.7 5.2 86 13-115 401-487 (557)
169 KOG1173 Anaphase-promoting com 91.0 1.9 4.1E-05 34.9 7.9 77 56-144 457-533 (611)
170 PF07035 Mic1: Colon cancer-as 90.9 3.8 8.1E-05 28.0 9.4 109 1-117 25-148 (167)
171 COG3898 Uncharacterized membra 90.7 6.7 0.00014 30.7 10.3 94 17-115 132-289 (531)
172 KOG1129 TPR repeat-containing 90.7 2.8 6E-05 32.0 8.1 84 58-154 227-311 (478)
173 PF00637 Clathrin: Region in C 90.7 0.18 3.9E-06 32.9 1.9 94 59-155 12-105 (143)
174 PF13428 TPR_14: Tetratricopep 90.7 0.73 1.6E-05 23.6 3.9 28 56-83 3-30 (44)
175 COG3629 DnrI DNA-binding trans 90.6 4.9 0.00011 29.8 9.4 80 7-101 155-239 (280)
176 KOG1174 Anaphase-promoting com 90.6 5.1 0.00011 31.6 9.6 136 6-156 233-391 (564)
177 COG1729 Uncharacterized protei 90.6 2.5 5.4E-05 31.0 7.7 89 56-154 144-236 (262)
178 KOG2376 Signal recognition par 90.6 6.2 0.00013 32.3 10.4 138 10-155 17-197 (652)
179 PF10366 Vps39_1: Vacuolar sor 90.6 1.8 3.9E-05 27.2 6.3 28 55-82 40-67 (108)
180 KOG1914 mRNA cleavage and poly 90.6 8.3 0.00018 31.4 11.2 100 55-155 367-494 (656)
181 KOG4570 Uncharacterized conser 90.3 1.8 3.8E-05 32.8 6.8 53 66-118 112-164 (418)
182 COG4783 Putative Zn-dependent 90.0 5 0.00011 31.9 9.3 96 4-115 339-434 (484)
183 PF13374 TPR_10: Tetratricopep 89.7 0.99 2.1E-05 22.2 3.9 27 56-82 4-30 (42)
184 PF13512 TPR_18: Tetratricopep 89.6 3.1 6.6E-05 27.6 6.9 78 16-105 21-98 (142)
185 KOG1128 Uncharacterized conser 89.3 2.3 4.9E-05 35.5 7.3 61 55-116 554-614 (777)
186 KOG2002 TPR-containing nuclear 89.3 1.3 2.8E-05 38.0 6.0 85 61-154 653-737 (1018)
187 KOG0547 Translocase of outer m 89.0 5.6 0.00012 31.9 9.0 113 17-155 440-559 (606)
188 smart00299 CLH Clathrin heavy 89.0 1.4 3.1E-05 28.5 5.2 54 55-115 42-95 (140)
189 KOG2280 Vacuolar assembly/sort 89.0 2.2 4.7E-05 35.7 7.0 78 55-156 716-793 (829)
190 KOG4077 Cytochrome c oxidase, 88.8 2.1 4.6E-05 27.9 5.5 48 72-119 67-114 (149)
191 PF13929 mRNA_stabil: mRNA sta 88.6 3.6 7.8E-05 30.6 7.3 61 4-78 201-262 (292)
192 PF13170 DUF4003: Protein of u 88.2 7.4 0.00016 29.1 9.0 27 21-47 78-104 (297)
193 PRK10153 DNA-binding transcrip 87.8 13 0.00029 30.1 10.8 58 86-154 417-474 (517)
194 PF04184 ST7: ST7 protein; In 87.7 5.5 0.00012 32.0 8.2 119 17-148 212-346 (539)
195 PF13428 TPR_14: Tetratricopep 87.5 1.2 2.6E-05 22.7 3.3 28 91-118 3-30 (44)
196 KOG2053 Mitochondrial inherita 87.3 7.2 0.00016 33.4 9.0 91 8-115 44-136 (932)
197 PF02284 COX5A: Cytochrome c o 87.0 5.6 0.00012 24.9 6.5 63 20-98 25-88 (108)
198 PF14938 SNAP: Soluble NSF att 86.8 10 0.00023 27.8 11.6 109 8-117 97-224 (282)
199 KOG1156 N-terminal acetyltrans 86.8 17 0.00037 30.2 11.5 89 56-156 373-462 (700)
200 KOG2002 TPR-containing nuclear 86.7 14 0.0003 32.1 10.4 62 55-118 308-371 (1018)
201 KOG2076 RNA polymerase III tra 86.7 20 0.00043 30.9 12.5 100 14-116 149-268 (895)
202 KOG3617 WD40 and TPR repeat-co 86.5 2.9 6.3E-05 35.8 6.4 103 15-156 738-849 (1416)
203 PLN03098 LPA1 LOW PSII ACCUMUL 86.4 4.8 0.0001 31.9 7.2 68 4-83 74-141 (453)
204 PRK10866 outer membrane biogen 86.2 10 0.00023 27.3 9.6 72 17-100 44-115 (243)
205 PF13929 mRNA_stabil: mRNA sta 86.2 5.8 0.00013 29.5 7.2 77 71-155 183-260 (292)
206 COG4235 Cytochrome c biogenesi 85.9 12 0.00027 27.8 10.2 113 4-142 155-269 (287)
207 PF11848 DUF3368: Domain of un 85.7 2.6 5.6E-05 22.2 4.0 42 7-49 5-46 (48)
208 PF11207 DUF2989: Protein of u 85.3 8.8 0.00019 27.0 7.5 77 70-153 122-198 (203)
209 COG4700 Uncharacterized protei 85.2 11 0.00024 26.6 10.5 97 3-115 87-186 (251)
210 PF11848 DUF3368: Domain of un 85.1 4 8.7E-05 21.5 4.9 35 64-98 12-46 (48)
211 COG3063 PilF Tfp pilus assembl 84.4 13 0.00029 26.9 8.3 90 55-154 70-160 (250)
212 PF11846 DUF3366: Domain of un 84.2 4.7 0.0001 27.8 5.9 56 61-116 115-171 (193)
213 PF11663 Toxin_YhaV: Toxin wit 84.1 1.2 2.7E-05 29.1 2.7 30 17-48 107-136 (140)
214 cd00923 Cyt_c_Oxidase_Va Cytoc 84.0 7.9 0.00017 24.0 6.9 63 20-98 22-85 (103)
215 KOG1156 N-terminal acetyltrans 84.0 15 0.00033 30.5 9.1 98 6-120 372-469 (700)
216 KOG1125 TPR repeat-containing 83.9 16 0.00034 29.9 9.1 106 21-154 410-519 (579)
217 PRK15331 chaperone protein Sic 83.8 7.4 0.00016 26.5 6.4 86 16-117 48-133 (165)
218 KOG4570 Uncharacterized conser 83.7 16 0.00034 27.9 8.5 91 55-156 65-158 (418)
219 COG1729 Uncharacterized protei 83.3 13 0.00028 27.4 7.9 96 7-119 144-245 (262)
220 PF11663 Toxin_YhaV: Toxin wit 82.6 1.6 3.5E-05 28.6 2.8 30 68-99 109-138 (140)
221 TIGR03504 FimV_Cterm FimV C-te 82.6 5 0.00011 20.8 4.2 26 60-85 5-30 (44)
222 KOG0547 Translocase of outer m 82.6 21 0.00045 28.9 9.2 75 68-154 408-483 (606)
223 PRK10564 maltose regulon perip 82.3 4.2 9E-05 30.4 5.2 43 55-97 258-300 (303)
224 PF07721 TPR_4: Tetratricopept 82.0 2.5 5.5E-05 18.9 2.7 20 59-78 6-25 (26)
225 TIGR03504 FimV_Cterm FimV C-te 81.6 3.7 8E-05 21.3 3.4 25 11-35 5-29 (44)
226 PF11207 DUF2989: Protein of u 81.5 16 0.00035 25.8 8.0 79 15-109 117-198 (203)
227 KOG0553 TPR repeat-containing 81.5 20 0.00043 26.9 9.6 75 55-142 116-191 (304)
228 PF11846 DUF3366: Domain of un 81.5 5 0.00011 27.7 5.2 47 101-155 120-166 (193)
229 COG5107 RNA14 Pre-mRNA 3'-end 81.1 10 0.00022 30.4 7.0 87 55-153 398-486 (660)
230 PF10602 RPN7: 26S proteasome 80.9 7.5 0.00016 26.7 5.8 62 55-116 37-100 (177)
231 PRK10866 outer membrane biogen 80.1 20 0.00043 25.9 11.3 133 11-155 75-234 (243)
232 KOG2796 Uncharacterized conser 79.9 23 0.00049 26.5 8.8 66 55-120 178-243 (366)
233 PF13431 TPR_17: Tetratricopep 78.9 2.9 6.2E-05 20.1 2.4 24 131-154 11-34 (34)
234 PRK14720 transcript cleavage f 78.5 45 0.00098 29.2 12.4 109 6-115 117-249 (906)
235 KOG3617 WD40 and TPR repeat-co 78.4 20 0.00043 31.1 8.2 61 55-115 859-938 (1416)
236 KOG1125 TPR repeat-containing 78.0 37 0.0008 27.9 10.2 129 7-155 432-564 (579)
237 KOG1173 Anaphase-promoting com 77.9 15 0.00033 30.0 7.2 81 17-99 426-532 (611)
238 PF13525 YfiO: Outer membrane 77.8 21 0.00045 24.9 7.8 94 14-119 14-120 (203)
239 PF00515 TPR_1: Tetratricopept 76.7 6.3 0.00014 18.4 3.9 27 56-82 3-29 (34)
240 KOG2280 Vacuolar assembly/sort 76.3 48 0.001 28.3 11.4 77 60-155 690-766 (829)
241 PRK15331 chaperone protein Sic 75.5 16 0.00035 24.9 6.0 79 64-154 47-126 (165)
242 PF10602 RPN7: 26S proteasome 75.5 23 0.0005 24.2 10.2 101 7-119 38-143 (177)
243 PF09205 DUF1955: Domain of un 74.1 23 0.0005 23.5 6.5 65 7-86 88-152 (161)
244 PRK04841 transcriptional regul 73.8 58 0.0013 28.0 13.1 92 58-154 535-633 (903)
245 PF13174 TPR_6: Tetratricopept 73.2 4.7 0.0001 18.5 2.3 23 61-83 7-29 (33)
246 PF09613 HrpB1_HrpK: Bacterial 73.2 26 0.00056 23.8 8.2 53 64-118 20-73 (160)
247 PRK14956 DNA polymerase III su 73.1 39 0.00084 27.3 8.4 73 17-91 212-285 (484)
248 PF02607 B12-binding_2: B12 bi 72.7 6.8 0.00015 22.6 3.3 41 65-105 12-52 (79)
249 KOG0553 TPR repeat-containing 72.7 19 0.00041 27.0 6.2 77 65-154 92-170 (304)
250 PLN02789 farnesyltranstransfer 72.4 40 0.00086 25.5 12.2 107 7-116 39-169 (320)
251 cd07153 Fur_like Ferric uptake 72.3 9.9 0.00022 23.7 4.3 48 59-106 5-52 (116)
252 KOG4340 Uncharacterized conser 71.5 43 0.00093 25.6 10.4 121 17-155 156-332 (459)
253 PF14689 SPOB_a: Sensor_kinase 71.5 9.1 0.0002 21.3 3.5 24 59-82 28-51 (62)
254 KOG3060 Uncharacterized conser 71.5 39 0.00084 25.0 10.3 76 67-153 99-174 (289)
255 KOG2041 WD40 repeat protein [G 71.1 37 0.00081 29.0 8.0 98 18-115 747-878 (1189)
256 KOG0495 HAT repeat protein [RN 70.6 66 0.0014 27.3 13.8 142 4-155 439-640 (913)
257 KOG4567 GTPase-activating prot 70.6 20 0.00043 27.2 5.9 58 74-145 263-320 (370)
258 cd00280 TRFH Telomeric Repeat 69.9 18 0.00039 25.2 5.2 66 11-79 117-182 (200)
259 cd08326 CARD_CASP9 Caspase act 69.7 21 0.00046 21.3 7.8 40 65-108 41-80 (84)
260 KOG4555 TPR repeat-containing 69.4 7.7 0.00017 25.7 3.2 47 98-154 52-98 (175)
261 PF12926 MOZART2: Mitotic-spin 69.3 22 0.00049 21.4 5.2 44 75-118 29-72 (88)
262 COG0735 Fur Fe2+/Zn2+ uptake r 69.1 30 0.00066 22.8 6.4 66 25-105 6-71 (145)
263 PF04053 Coatomer_WDAD: Coatom 69.0 30 0.00065 27.5 7.0 28 88-115 346-373 (443)
264 KOG1920 IkappaB kinase complex 68.5 92 0.002 28.2 10.7 105 8-115 896-1025(1265)
265 TIGR02561 HrpB1_HrpK type III 68.1 34 0.00073 23.0 6.8 64 16-81 55-120 (153)
266 KOG2297 Predicted translation 67.9 28 0.00061 26.5 6.2 75 60-153 261-341 (412)
267 KOG0548 Molecular co-chaperone 66.7 28 0.00061 28.2 6.4 77 65-153 13-90 (539)
268 PF07163 Pex26: Pex26 protein; 66.7 52 0.0011 24.7 7.5 88 58-156 87-181 (309)
269 PF10474 DUF2451: Protein of u 66.6 46 0.001 24.0 7.5 92 34-146 114-220 (234)
270 PF11491 DUF3213: Protein of u 66.1 2.1 4.6E-05 25.4 0.1 23 32-54 16-38 (88)
271 PF04184 ST7: ST7 protein; In 66.1 47 0.001 26.9 7.4 49 99-155 269-317 (539)
272 PF07719 TPR_2: Tetratricopept 64.2 13 0.00029 17.0 3.8 26 57-82 4-29 (34)
273 PRK11639 zinc uptake transcrip 64.1 43 0.00093 22.7 6.5 66 26-106 12-77 (169)
274 COG5108 RPO41 Mitochondrial DN 64.0 45 0.00098 28.3 7.2 73 59-143 33-113 (1117)
275 KOG4162 Predicted calmodulin-b 64.0 88 0.0019 26.8 8.8 80 36-115 319-420 (799)
276 cd08819 CARD_MDA5_2 Caspase ac 63.8 30 0.00066 20.9 6.1 46 59-109 41-86 (88)
277 PF13181 TPR_8: Tetratricopept 63.7 14 0.0003 17.0 4.0 27 56-82 3-29 (34)
278 PF13512 TPR_18: Tetratricopep 63.3 41 0.0009 22.3 7.1 55 65-119 21-77 (142)
279 PF04053 Coatomer_WDAD: Coatom 62.8 61 0.0013 25.8 7.7 88 16-115 329-428 (443)
280 PF10300 DUF3808: Protein of u 62.5 80 0.0017 25.3 10.9 105 8-116 232-374 (468)
281 cd07153 Fur_like Ferric uptake 62.2 22 0.00047 22.1 4.4 45 10-54 5-49 (116)
282 cd08819 CARD_MDA5_2 Caspase ac 62.0 33 0.00072 20.8 7.5 69 72-155 20-88 (88)
283 PRK13342 recombination factor 61.9 76 0.0016 24.9 10.1 84 18-101 187-277 (413)
284 cd00280 TRFH Telomeric Repeat 61.3 54 0.0012 23.0 7.9 53 21-82 85-139 (200)
285 KOG0037 Ca2+-binding protein, 60.1 24 0.00053 25.1 4.5 37 32-68 151-190 (221)
286 cd08332 CARD_CASP2 Caspase act 59.8 36 0.00079 20.5 8.0 37 65-105 45-81 (90)
287 KOG1174 Anaphase-promoting com 59.6 90 0.002 25.0 9.4 58 56-115 440-497 (564)
288 KOG4162 Predicted calmodulin-b 59.1 99 0.0021 26.5 8.3 57 64-120 488-544 (799)
289 COG4105 ComL DNA uptake lipopr 58.9 70 0.0015 23.5 7.0 64 56-120 37-102 (254)
290 PF01475 FUR: Ferric uptake re 58.8 13 0.00029 23.4 2.9 48 59-106 12-59 (120)
291 COG4700 Uncharacterized protei 58.5 64 0.0014 22.9 8.0 88 58-153 93-180 (251)
292 PF10155 DUF2363: Uncharacteri 58.0 49 0.0011 21.4 8.1 53 63-115 72-124 (126)
293 COG2812 DnaX DNA polymerase II 57.9 95 0.0021 25.4 8.0 76 14-92 207-283 (515)
294 KOG1538 Uncharacterized conser 57.5 99 0.0022 26.3 8.0 95 6-114 599-695 (1081)
295 PRK14958 DNA polymerase III su 56.5 1.1E+02 0.0023 24.9 9.3 70 18-90 211-281 (509)
296 TIGR02508 type_III_yscG type I 56.3 48 0.001 20.8 5.3 19 97-115 47-65 (115)
297 PRK08691 DNA polymerase III su 56.2 1.3E+02 0.0028 25.7 8.7 70 18-90 211-281 (709)
298 PF02847 MA3: MA3 domain; Int 56.1 25 0.00054 21.7 3.8 57 58-115 6-63 (113)
299 PF08311 Mad3_BUB1_I: Mad3/BUB 56.0 30 0.00065 22.2 4.2 43 72-114 81-124 (126)
300 cd07229 Pat_TGL3_like Triacylg 56.0 98 0.0021 24.3 7.6 21 130-150 234-254 (391)
301 PF07079 DUF1347: Protein of u 55.9 1.1E+02 0.0024 24.8 9.9 46 9-54 132-181 (549)
302 PF02184 HAT: HAT (Half-A-TPR) 55.9 21 0.00045 17.2 2.6 25 69-95 2-26 (32)
303 COG3118 Thioredoxin domain-con 55.4 65 0.0014 24.3 6.2 20 15-34 144-163 (304)
304 PRK07764 DNA polymerase III su 53.2 1.6E+02 0.0034 25.8 9.2 68 19-88 213-281 (824)
305 KOG2796 Uncharacterized conser 52.7 97 0.0021 23.3 9.7 78 38-115 195-278 (366)
306 PF10579 Rapsyn_N: Rapsyn N-te 52.1 49 0.0011 19.6 4.5 46 66-111 18-65 (80)
307 COG4235 Cytochrome c biogenesi 52.0 99 0.0022 23.2 9.1 89 55-154 157-248 (287)
308 PF09454 Vps23_core: Vps23 cor 51.8 27 0.00058 19.8 3.1 50 2-52 5-54 (65)
309 COG1447 CelC Phosphotransferas 51.5 59 0.0013 20.4 4.7 66 15-81 29-103 (105)
310 PF09613 HrpB1_HrpK: Bacterial 51.1 76 0.0016 21.6 6.9 20 16-35 55-74 (160)
311 KOG2223 Uncharacterized conser 51.1 61 0.0013 25.9 5.7 55 25-79 459-518 (586)
312 cd08329 CARD_BIRC2_BIRC3 Caspa 51.0 55 0.0012 19.9 7.5 68 23-113 24-91 (94)
313 KOG1114 Tripeptidyl peptidase 50.9 64 0.0014 28.6 6.2 96 43-147 1177-1281(1304)
314 smart00028 TPR Tetratricopepti 50.9 21 0.00045 15.0 3.0 27 56-82 3-29 (34)
315 COG4105 ComL DNA uptake lipopr 50.6 99 0.0021 22.7 7.4 88 16-115 45-139 (254)
316 KOG2223 Uncharacterized conser 50.4 31 0.00068 27.5 4.1 43 74-116 459-501 (586)
317 COG3898 Uncharacterized membra 50.4 1.3E+02 0.0028 24.0 11.3 85 6-90 189-299 (531)
318 PF04124 Dor1: Dor1-like famil 50.3 1.1E+02 0.0024 23.3 7.4 76 9-84 110-187 (338)
319 PRK12356 glutaminase; Reviewed 50.3 99 0.0021 23.6 6.6 61 33-93 91-162 (319)
320 COG2405 Predicted nucleic acid 50.0 34 0.00074 22.7 3.6 43 6-49 111-153 (157)
321 PF11123 DNA_Packaging_2: DNA 49.8 36 0.00078 19.9 3.3 62 20-82 12-73 (82)
322 PF11768 DUF3312: Protein of u 49.6 94 0.002 25.5 6.7 96 55-156 409-517 (545)
323 PF14669 Asp_Glu_race_2: Putat 48.7 46 0.00099 23.6 4.3 58 58-115 136-207 (233)
324 PF01475 FUR: Ferric uptake re 48.7 29 0.00064 21.8 3.3 45 10-54 12-56 (120)
325 COG0735 Fur Fe2+/Zn2+ uptake r 48.5 47 0.001 22.0 4.3 46 9-54 24-69 (145)
326 PRK13808 adenylate kinase; Pro 48.4 9.6 0.00021 29.1 1.1 65 24-90 46-110 (333)
327 smart00386 HAT HAT (Half-A-TPR 48.4 26 0.00057 15.5 3.9 29 19-48 1-29 (33)
328 PF08311 Mad3_BUB1_I: Mad3/BUB 47.5 74 0.0016 20.4 5.7 44 23-79 81-124 (126)
329 PF06957 COPI_C: Coatomer (COP 47.5 1.4E+02 0.0031 23.7 7.6 68 13-82 126-232 (422)
330 KOG1127 TPR repeat-containing 47.1 1.7E+02 0.0036 26.3 8.0 60 55-117 597-658 (1238)
331 PRK11639 zinc uptake transcrip 46.3 42 0.00091 22.8 3.9 45 10-54 30-74 (169)
332 COG4455 ImpE Protein of avirul 46.2 44 0.00095 24.3 4.0 49 94-153 6-55 (273)
333 PF13525 YfiO: Outer membrane 46.2 98 0.0021 21.4 11.3 134 9-154 46-199 (203)
334 COG5108 RPO41 Mitochondrial DN 45.6 1.7E+02 0.0037 25.1 7.7 75 10-101 33-115 (1117)
335 smart00804 TAP_C C-terminal do 45.3 33 0.00071 19.3 2.7 23 67-89 38-61 (63)
336 PRK10454 PTS system N,N'-diace 45.3 63 0.0014 20.6 4.3 64 16-80 42-114 (115)
337 PF04910 Tcf25: Transcriptiona 45.1 1.4E+02 0.0031 23.0 9.0 110 7-116 42-166 (360)
338 PF09868 DUF2095: Uncharacteri 44.9 31 0.00068 22.0 2.8 27 10-36 66-92 (128)
339 KOG0543 FKBP-type peptidyl-pro 44.7 1.5E+02 0.0034 23.3 7.5 96 14-116 217-318 (397)
340 KOG0991 Replication factor C, 43.6 55 0.0012 24.1 4.2 39 2-41 236-274 (333)
341 PF12554 MOZART1: Mitotic-spin 43.3 52 0.0011 17.4 3.5 25 65-89 15-39 (48)
342 PF14840 DNA_pol3_delt_C: Proc 43.0 38 0.00082 21.8 3.1 28 67-94 10-37 (125)
343 KOG3719 Carnitine O-acyltransf 43.0 1.4E+02 0.003 24.6 6.6 70 31-100 436-515 (638)
344 cd08789 CARD_IPS-1_RIG-I Caspa 42.9 72 0.0016 19.0 4.3 49 56-109 34-82 (84)
345 KOG4077 Cytochrome c oxidase, 42.6 98 0.0021 20.4 6.7 60 23-97 67-126 (149)
346 COG4003 Uncharacterized protei 42.3 55 0.0012 19.6 3.4 26 59-84 36-61 (98)
347 KOG1127 TPR repeat-containing 42.3 2.6E+02 0.0057 25.2 8.9 88 55-154 527-617 (1238)
348 KOG3060 Uncharacterized conser 42.0 1.4E+02 0.0031 22.2 10.9 109 18-154 25-141 (289)
349 cd08317 Death_ank Death domain 41.9 73 0.0016 18.7 4.2 41 104-155 43-83 (84)
350 KOG1147 Glutamyl-tRNA syntheta 40.9 34 0.00074 28.1 3.1 22 24-45 252-273 (712)
351 PF00566 RabGAP-TBC: Rab-GTPas 40.8 67 0.0014 22.0 4.4 41 75-115 150-190 (214)
352 smart00544 MA3 Domain in DAP-5 40.8 86 0.0019 19.3 7.1 57 58-115 6-63 (113)
353 PF08542 Rep_fac_C: Replicatio 40.7 37 0.00081 19.9 2.7 37 3-40 3-39 (89)
354 PF09090 MIF4G_like_2: MIF4G l 40.7 1.4E+02 0.0031 21.7 8.4 132 3-145 9-158 (253)
355 KOG0550 Molecular chaperone (D 40.6 1.3E+02 0.0028 24.1 6.0 52 64-115 259-313 (486)
356 PRK09462 fur ferric uptake reg 40.5 68 0.0015 21.1 4.2 47 59-105 21-68 (148)
357 TIGR03814 Gln_ase glutaminase 40.4 1.6E+02 0.0035 22.3 6.4 61 33-93 79-151 (300)
358 KOG4334 Uncharacterized conser 40.4 8.8 0.00019 30.7 -0.1 89 46-146 480-573 (650)
359 PF04762 IKI3: IKI3 family; I 40.4 1.3E+02 0.0028 26.6 6.7 43 41-83 796-843 (928)
360 smart00777 Mad3_BUB1_I Mad3/BU 39.2 69 0.0015 20.7 3.9 42 72-113 81-123 (125)
361 COG2405 Predicted nucleic acid 39.0 81 0.0017 21.1 4.1 42 56-98 112-153 (157)
362 TIGR02561 HrpB1_HrpK type III 38.8 1.2E+02 0.0026 20.4 8.2 52 66-119 22-74 (153)
363 PRK04841 transcriptional regul 38.7 2.6E+02 0.0056 24.2 14.1 87 60-154 618-712 (903)
364 PRK12357 glutaminase; Reviewed 38.5 1.8E+02 0.0039 22.3 7.2 61 33-93 95-167 (326)
365 COG3947 Response regulator con 38.5 76 0.0016 24.1 4.4 48 91-148 281-328 (361)
366 KOG2610 Uncharacterized conser 38.3 1.4E+02 0.003 23.4 5.8 80 66-156 115-198 (491)
367 PF08461 HTH_12: Ribonuclease 38.2 70 0.0015 18.0 3.4 44 60-103 3-46 (66)
368 PRK09462 fur ferric uptake reg 38.2 85 0.0018 20.6 4.4 45 10-54 21-66 (148)
369 cd08323 CARD_APAF1 Caspase act 38.0 90 0.002 18.7 8.3 67 24-112 16-82 (86)
370 PRK10564 maltose regulon perip 38.0 40 0.00086 25.4 2.9 36 84-120 251-287 (303)
371 COG4455 ImpE Protein of avirul 37.3 1.6E+02 0.0035 21.5 7.0 57 58-115 5-61 (273)
372 PRK09591 celC cellobiose phosp 37.3 1E+02 0.0023 19.2 4.6 64 15-79 30-102 (104)
373 PF13963 Transpos_assoc: Trans 37.3 22 0.00048 20.7 1.3 28 17-44 46-73 (77)
374 PF12926 MOZART2: Mitotic-spin 37.2 96 0.0021 18.8 6.9 43 26-82 29-71 (88)
375 PF09868 DUF2095: Uncharacteri 37.2 65 0.0014 20.6 3.4 27 59-85 66-92 (128)
376 smart00005 DEATH DEATH domain, 37.1 86 0.0019 18.2 4.4 49 96-155 37-85 (88)
377 KOG4340 Uncharacterized conser 37.1 66 0.0014 24.6 3.9 65 15-79 251-335 (459)
378 TIGR02531 yecD_yerC TrpR-relat 36.6 77 0.0017 19.1 3.6 27 55-81 3-29 (88)
379 PF15297 CKAP2_C: Cytoskeleton 36.4 1.1E+02 0.0024 23.6 5.1 44 8-51 143-186 (353)
380 TIGR03581 EF_0839 conserved hy 36.0 1.2E+02 0.0025 21.9 4.8 47 69-115 187-234 (236)
381 PF13281 DUF4071: Domain of un 35.7 2.1E+02 0.0047 22.3 9.7 99 18-116 195-332 (374)
382 smart00164 TBC Domain in Tre-2 35.6 84 0.0018 21.4 4.2 42 75-116 152-194 (199)
383 PF04124 Dor1: Dor1-like famil 35.2 72 0.0016 24.3 4.1 36 59-94 111-147 (338)
384 COG1747 Uncharacterized N-term 34.8 2.7E+02 0.0058 23.2 12.4 137 7-155 68-227 (711)
385 PRK14529 adenylate kinase; Pro 34.7 51 0.0011 23.6 3.0 65 22-89 44-108 (223)
386 COG2987 HutU Urocanate hydrata 34.5 51 0.0011 26.5 3.1 19 73-91 244-262 (561)
387 cd01670 Death Death Domain: a 34.1 81 0.0018 17.8 3.4 41 104-155 37-77 (79)
388 PRK14951 DNA polymerase III su 33.9 2.9E+02 0.0063 23.3 8.6 70 18-90 216-286 (618)
389 TIGR02328 conserved hypothetic 33.7 40 0.00087 21.5 2.0 18 24-41 54-71 (120)
390 COG5210 GTPase-activating prot 33.0 81 0.0018 25.4 4.2 44 73-116 361-404 (496)
391 PF03943 TAP_C: TAP C-terminal 32.8 34 0.00075 18.2 1.5 19 102-120 26-44 (51)
392 PF05944 Phage_term_smal: Phag 32.7 1.4E+02 0.0031 19.5 5.3 44 42-85 31-79 (132)
393 TIGR03581 EF_0839 conserved hy 32.4 1.4E+02 0.0031 21.5 4.8 61 21-81 163-235 (236)
394 PRK06920 dnaE DNA polymerase I 32.4 2.2E+02 0.0048 25.8 6.9 74 10-85 696-779 (1107)
395 PF10475 DUF2450: Protein of u 32.3 1.2E+02 0.0026 22.5 4.7 23 131-153 195-217 (291)
396 PRK00971 glutaminase; Provisio 31.8 2.3E+02 0.005 21.5 6.7 61 32-92 85-157 (307)
397 PF10363 DUF2435: Protein of u 31.8 1.2E+02 0.0026 18.3 4.5 18 37-54 54-71 (92)
398 cd08784 Death_DRs Death Domain 31.7 1E+02 0.0022 18.0 3.5 41 104-155 38-78 (79)
399 PF11817 Foie-gras_1: Foie gra 31.6 1.7E+02 0.0036 21.1 5.3 58 58-115 182-244 (247)
400 PF14840 DNA_pol3_delt_C: Proc 31.3 65 0.0014 20.7 2.9 29 18-46 10-38 (125)
401 PF10300 DUF3808: Protein of u 31.3 2.8E+02 0.006 22.3 9.9 98 8-115 191-293 (468)
402 PRK07374 dnaE DNA polymerase I 31.2 1.9E+02 0.0041 26.4 6.3 74 10-85 729-812 (1170)
403 PRK14960 DNA polymerase III su 31.1 3.4E+02 0.0074 23.3 7.6 69 18-89 210-279 (702)
404 PF14162 YozD: YozD-like prote 31.0 81 0.0018 17.0 2.6 19 72-90 13-31 (57)
405 KOG0403 Neoplastic transformat 30.8 2.2E+02 0.0049 23.2 6.0 58 57-115 512-569 (645)
406 TIGR01529 argR_whole arginine 30.8 92 0.002 20.6 3.6 39 10-48 5-43 (146)
407 PF10963 DUF2765: Protein of u 30.5 71 0.0015 19.1 2.7 28 2-29 13-40 (83)
408 PRK06645 DNA polymerase III su 30.3 3.1E+02 0.0066 22.5 7.7 72 18-90 220-293 (507)
409 KOG0550 Molecular chaperone (D 30.0 2.4E+02 0.0052 22.6 6.0 51 16-80 260-313 (486)
410 PF13281 DUF4071: Domain of un 29.9 2.7E+02 0.0059 21.8 12.1 132 10-155 146-327 (374)
411 COG3294 HD supefamily hydrolas 29.9 43 0.00093 24.3 1.9 21 71-91 67-87 (269)
412 PRK05563 DNA polymerase III su 29.8 3.2E+02 0.007 22.6 9.1 68 18-88 211-279 (559)
413 PF07304 SRA1: Steroid recepto 29.7 68 0.0015 21.6 2.8 44 76-119 77-120 (157)
414 cd08316 Death_FAS_TNFRSF6 Deat 29.7 95 0.0021 19.1 3.2 40 105-155 49-88 (97)
415 PF00356 LacI: Bacterial regul 29.5 81 0.0018 16.4 2.5 19 21-39 28-46 (46)
416 KOG1920 IkappaB kinase complex 29.5 4.5E+02 0.0098 24.2 9.3 130 8-141 793-943 (1265)
417 PF13934 ELYS: Nuclear pore co 29.5 2.1E+02 0.0046 20.4 7.8 56 55-115 77-134 (226)
418 PF08870 DUF1832: Domain of un 29.3 1.5E+02 0.0033 18.7 6.9 75 22-103 6-96 (113)
419 COG5210 GTPase-activating prot 29.2 2.6E+02 0.0056 22.6 6.4 62 39-100 361-423 (496)
420 KOG2536 MAM33, mitochondrial m 28.9 1.9E+02 0.0041 21.4 5.0 39 26-81 220-258 (263)
421 PF09670 Cas_Cas02710: CRISPR- 28.6 2.6E+02 0.0055 21.8 6.1 59 57-117 135-197 (379)
422 KOG0888 Nucleoside diphosphate 28.5 1.1E+02 0.0024 20.6 3.6 47 1-54 12-72 (156)
423 PF00619 CARD: Caspase recruit 28.4 1.2E+02 0.0027 17.4 7.3 66 23-111 17-82 (85)
424 TIGR01529 argR_whole arginine 28.2 1.3E+02 0.0028 19.9 3.9 41 60-100 6-46 (146)
425 TIGR00823 EIIA-LAC phosphotran 28.1 1.5E+02 0.0033 18.3 4.0 38 16-54 28-65 (99)
426 KOG0548 Molecular co-chaperone 28.1 3.4E+02 0.0075 22.4 8.2 83 15-99 12-114 (539)
427 KOG2422 Uncharacterized conser 28.0 2.7E+02 0.0058 23.4 6.1 60 59-118 347-407 (665)
428 PRK07135 dnaE DNA polymerase I 27.8 3.6E+02 0.0077 24.2 7.3 74 10-85 647-730 (973)
429 KOG0624 dsRNA-activated protei 27.8 3E+02 0.0066 21.7 8.2 81 63-153 115-209 (504)
430 PRK14962 DNA polymerase III su 27.5 3.3E+02 0.0072 22.0 9.7 40 58-98 248-287 (472)
431 PF04097 Nic96: Nup93/Nic96; 26.9 1.1E+02 0.0023 25.6 4.0 43 94-146 116-158 (613)
432 PRK14963 DNA polymerase III su 26.5 3.6E+02 0.0077 22.0 8.5 69 18-90 208-277 (504)
433 smart00638 LPD_N Lipoprotein N 26.5 3.6E+02 0.0078 22.1 10.4 109 7-115 342-486 (574)
434 PF09986 DUF2225: Uncharacteri 26.4 2.2E+02 0.0047 20.2 5.0 49 70-118 141-194 (214)
435 cd08304 DD_superfamily The Dea 26.2 1E+02 0.0023 17.4 2.8 33 72-108 34-66 (69)
436 PF09520 RE_TdeIII: Type II re 26.0 94 0.002 22.8 3.2 34 21-54 101-134 (251)
437 KOG1585 Protein required for f 26.0 2.8E+02 0.0061 20.7 10.1 56 92-155 193-249 (308)
438 KOG2536 MAM33, mitochondrial m 26.0 1.4E+02 0.0029 22.1 3.9 42 71-115 215-257 (263)
439 COG2062 SixA Phosphohistidine 26.0 71 0.0015 21.7 2.4 41 21-65 31-71 (163)
440 TIGR01228 hutU urocanate hydra 25.9 93 0.002 25.3 3.3 40 72-111 234-278 (545)
441 cd08330 CARD_ASC_NALP1 Caspase 25.7 1.5E+02 0.0033 17.4 7.1 30 66-99 41-70 (82)
442 PRK05414 urocanate hydratase; 25.4 93 0.002 25.4 3.2 41 71-111 242-287 (556)
443 COG4785 NlpI Lipoprotein NlpI, 25.4 2.2E+02 0.0048 20.9 4.8 30 6-35 100-129 (297)
444 cd08812 CARD_RIG-I_like Caspas 25.3 1.6E+02 0.0035 17.6 4.2 49 56-108 36-85 (88)
445 PF07864 DUF1651: Protein of u 25.2 80 0.0017 18.2 2.3 20 69-88 51-70 (75)
446 smart00540 LEM in nuclear memb 25.2 62 0.0014 16.8 1.6 18 25-42 9-26 (44)
447 PF07443 HARP: HepA-related pr 25.1 29 0.00062 19.0 0.3 29 19-47 6-34 (55)
448 KOG0508 Ankyrin repeat protein 25.0 3.9E+02 0.0085 22.0 7.3 37 14-50 346-386 (615)
449 KOG2063 Vacuolar assembly/sort 25.0 1.6E+02 0.0034 26.0 4.6 28 55-82 505-532 (877)
450 cd01671 CARD Caspase activatio 24.9 1.4E+02 0.0031 16.9 7.3 33 67-103 40-72 (80)
451 KOG2214 Predicted esterase of 24.9 4E+02 0.0086 22.0 6.5 111 27-150 192-333 (543)
452 PF07575 Nucleopor_Nup85: Nup8 24.9 4E+02 0.0086 22.0 8.2 89 55-156 373-461 (566)
453 PF08967 DUF1884: Domain of un 24.7 77 0.0017 18.9 2.1 21 21-41 11-31 (85)
454 cd08780 Death_TRADD Death Doma 24.5 1.7E+02 0.0038 17.8 3.6 56 89-155 32-87 (90)
455 PF09373 PMBR: Pseudomurein-bi 24.4 78 0.0017 15.0 1.8 21 21-41 11-31 (33)
456 TIGR02878 spore_ypjB sporulati 24.4 2.8E+02 0.0061 20.1 7.7 19 15-33 15-33 (233)
457 PF11838 ERAP1_C: ERAP1-like C 24.3 2.9E+02 0.0064 20.3 10.6 65 20-84 145-231 (324)
458 PF00382 TFIIB: Transcription 23.8 1.4E+02 0.003 16.6 3.1 43 70-112 15-61 (71)
459 cd08785 CARD_CARD9-like Caspas 23.7 1.8E+02 0.0038 17.5 6.3 27 69-99 48-74 (86)
460 TIGR00594 polc DNA-directed DN 23.6 2.5E+02 0.0053 25.3 5.7 74 10-85 718-801 (1022)
461 cd08810 CARD_BCL10 Caspase act 23.5 1.8E+02 0.0038 17.4 6.5 57 24-103 18-74 (84)
462 cd08318 Death_NMPP84 Death dom 23.0 1.7E+02 0.0036 17.4 3.4 42 103-155 44-85 (86)
463 COG1466 HolA DNA polymerase II 23.0 3.4E+02 0.0074 20.5 8.5 28 63-90 217-244 (334)
464 PF07575 Nucleopor_Nup85: Nup8 23.0 45 0.00098 27.3 1.2 59 9-69 409-473 (566)
465 KOG2659 LisH motif-containing 23.0 2.9E+02 0.0064 20.0 5.1 57 58-116 30-91 (228)
466 TIGR03184 DNA_S_dndE DNA sulfu 23.0 2E+02 0.0044 18.0 6.6 82 22-103 5-98 (105)
467 KOG2114 Vacuolar assembly/sort 22.9 5.3E+02 0.012 22.8 8.2 109 13-156 376-486 (933)
468 KOG0543 FKBP-type peptidyl-pro 22.5 1.7E+02 0.0036 23.1 4.0 94 8-118 260-355 (397)
469 KOG0890 Protein kinase of the 22.5 6.3E+02 0.014 25.3 8.0 57 57-115 1452-1509(2382)
470 PRK14953 DNA polymerase III su 22.4 4.3E+02 0.0092 21.5 9.3 70 19-91 212-282 (486)
471 cd00215 PTS_IIA_lac PTS_IIA, P 22.4 2E+02 0.0043 17.6 3.9 38 16-54 26-63 (97)
472 PF00531 Death: Death domain; 22.2 1.1E+02 0.0024 17.3 2.6 41 70-112 40-80 (83)
473 PF12862 Apc5: Anaphase-promot 22.2 1.9E+02 0.004 17.2 5.3 52 65-116 9-68 (94)
474 PRK14961 DNA polymerase III su 22.2 3.7E+02 0.008 20.6 8.2 30 60-90 252-281 (363)
475 PRK10304 ferritin; Provisional 22.1 2.6E+02 0.0057 18.9 6.1 91 21-113 51-155 (165)
476 PF03745 DUF309: Domain of unk 22.0 1.6E+02 0.0034 16.3 4.6 49 64-112 9-62 (62)
477 KOG1538 Uncharacterized conser 21.8 5.2E+02 0.011 22.4 6.8 58 55-115 599-658 (1081)
478 PRK13341 recombination factor 21.5 5.3E+02 0.012 22.3 10.1 104 1-106 193-310 (725)
479 KOG4567 GTPase-activating prot 21.5 3.9E+02 0.0084 20.6 5.7 73 24-115 262-344 (370)
480 TIGR02710 CRISPR-associated pr 21.4 4E+02 0.0088 20.9 5.9 55 60-114 136-196 (380)
481 PRK07374 dnaE DNA polymerase I 21.1 2.9E+02 0.0063 25.3 5.7 65 56-123 726-814 (1170)
482 PF12793 SgrR_N: Sugar transpo 20.9 2.3E+02 0.0051 17.9 4.9 58 55-114 20-95 (115)
483 KOG2908 26S proteasome regulat 20.9 4.1E+02 0.0089 20.7 7.0 63 55-117 76-143 (380)
484 PHA01754 hypothetical protein 20.8 1.2E+02 0.0026 16.9 2.2 18 71-88 47-64 (69)
485 PRK14952 DNA polymerase III su 20.8 5.1E+02 0.011 21.7 8.1 69 18-88 210-279 (584)
486 PF07875 Coat_F: Coat F domain 20.6 1.4E+02 0.003 16.4 2.6 18 70-87 44-61 (64)
487 cd01055 Nonheme_Ferritin nonhe 20.6 2.6E+02 0.0056 18.2 5.5 91 21-113 49-153 (156)
488 PF13934 ELYS: Nuclear pore co 20.5 3.3E+02 0.0071 19.4 7.1 71 59-144 113-183 (226)
489 PF02631 RecX: RecX family; I 20.5 2.3E+02 0.005 17.7 9.3 94 20-113 7-117 (121)
490 PF08631 SPO22: Meiosis protei 20.4 3.5E+02 0.0077 19.8 12.1 61 56-118 86-150 (278)
491 PRK05898 dnaE DNA polymerase I 20.4 4.8E+02 0.01 23.5 6.7 74 10-85 644-727 (971)
492 TIGR02026 BchE magnesium-proto 20.4 3.3E+02 0.0072 22.0 5.6 67 21-87 254-339 (497)
493 PF11838 ERAP1_C: ERAP1-like C 20.3 3.6E+02 0.0078 19.8 10.2 78 59-150 134-218 (324)
494 smart00031 DED Death effector 20.3 1.4E+02 0.0029 17.4 2.6 40 70-111 37-77 (79)
495 TIGR01503 MthylAspMut_E methyl 20.2 3E+02 0.0065 22.3 5.1 44 69-115 69-112 (480)
496 PF14853 Fis1_TPR_C: Fis1 C-te 20.2 1.6E+02 0.0035 15.7 4.4 34 60-95 7-40 (53)
497 KOG2297 Predicted translation 20.2 4.2E+02 0.0091 20.5 7.1 46 27-73 278-340 (412)
498 COG5159 RPN6 26S proteasome re 20.1 3.5E+02 0.0075 20.8 5.1 51 62-112 11-68 (421)
499 PF09435 DUF2015: Fungal prote 20.1 1.4E+02 0.003 19.5 2.7 15 74-88 88-102 (128)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=222.72 Aligned_cols=155 Identities=32% Similarity=0.690 Sum_probs=133.2
Q ss_pred CCCCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-----------------chHHHHHHH
Q 041561 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHG 63 (156)
Q Consensus 1 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-----------------~~~~~li~~ 63 (156)
++||..||+++|++|++.|++++|+++|++|.+.|+.||..+||+||++|+++| .+||+||.+
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~ 400 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 357777777777777777777777777777777777777777777777777777 899999999
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC-----c-------------
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK-----C------------- 125 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----c------------- 125 (156)
|+++|+.++|.++|++|.+.|+.||..||+++|++|++.|++++|.++|+.|.+++|+.|+ |
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999878898887 2
Q ss_pred ------CCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 126 ------LMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 126 ------~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
++++.||..+|++||.+|+.+|+++.|+++
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 677888888899998888888888888765
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.97 E-value=2.5e-30 Score=214.65 Aligned_cols=152 Identities=24% Similarity=0.380 Sum_probs=116.7
Q ss_pred CCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc---------------------chHHHHH
Q 041561 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------------VTWNEMI 61 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---------------------~~~~~li 61 (156)
||..||+.+|.+|++.|+++.|.++|++|.+.|+.||..+||+||.+|++.| .+||+||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 7888888888888888888888888888888888888888888888888888 7888888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccc-cccCCC-----------c----
Q 041561 62 HGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD-HEVKPK-----------C---- 125 (156)
Q Consensus 62 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~-----------c---- 125 (156)
.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++.|++++|.++|++|..+ .|+.|+ |
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 888888888888888888888888888888888888888888888888888888533 454333 0
Q ss_pred ------------CCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 126 ------------LMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 126 ------------~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
..++.||..+||+||.+|++.|++++|.+
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Confidence 23345555555555555555555555554
No 3
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=1.3e-30 Score=215.05 Aligned_cols=155 Identities=35% Similarity=0.770 Sum_probs=139.4
Q ss_pred CCCCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc----------------chHHHHHHHH
Q 041561 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------VTWNEMIHGY 64 (156)
Q Consensus 1 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----------------~~~~~li~~~ 64 (156)
++||..||+++|.+|++.|+++.++++|..+.+.|+.+|..++|+||++|+++| .+||+||.+|
T Consensus 485 ~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~ 564 (857)
T PLN03077 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGY 564 (857)
T ss_pred CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 468888888888888888888889999998888999999999999999999998 6899999999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC-----c--------------
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK-----C-------------- 125 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----c-------------- 125 (156)
+++|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+++|+.|+ |
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999778998886 2
Q ss_pred -----CCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 126 -----LMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 126 -----~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
+++++||..+|++||.+|..+|+.+.|+++
T Consensus 645 ~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 667788888888888888888888777654
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.97 E-value=5.9e-30 Score=212.38 Aligned_cols=154 Identities=18% Similarity=0.291 Sum_probs=120.8
Q ss_pred CCCCcccHHHHHHHhcCCCchHHHHHHHHHHHH--hCCCCchHHHhHHHHHhhhcc---------------------chH
Q 041561 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVK--DGYGNDIFVGSAPINIYCNCG---------------------VTW 57 (156)
Q Consensus 1 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~~---------------------~~~ 57 (156)
++||..||+++|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++.| .+|
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 468888888888888888888888888888865 567888888888888888877 578
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC-----------c-
Q 041561 58 NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK-----------C- 125 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----------c- 125 (156)
|++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++.|++++|.++|+.| .+.|+.|+ |
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM-~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA-RKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888888888888888888888 55666665 1
Q ss_pred ---------------CCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 126 ---------------LMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 126 ---------------~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
..++.||..+||+||.+|++.|++++|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlel 741 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 345677888888888888888888777664
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.96 E-value=7e-29 Score=204.80 Aligned_cols=145 Identities=26% Similarity=0.442 Sum_probs=118.7
Q ss_pred CCCCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-----------------chHHHHHHH
Q 041561 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------VTWNEMIHG 63 (156)
Q Consensus 1 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-----------------~~~~~li~~ 63 (156)
++||..||+.+|.+|++.|+++.++++|..|.+.|+.||..+||+||++|++.| .+||+||.+
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~ 363 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHH
Confidence 367777777777777777777777777777777788888888888888888888 799999999
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHH
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~ 143 (156)
|++.|++++|+++|++|++.|+.||..||+.+|.+|++.|++++|.++++.| .+.|+ .||..+||+||.+|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~-~~~g~--------~~~~~~~n~Li~~y 434 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA-ERKGL--------ISYVVVANALIEMY 434 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH-HHhCC--------CcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 56664 45555555555555
Q ss_pred hhcCCHhHHhh
Q 041561 144 QVHSNVRLAKK 154 (156)
Q Consensus 144 ~~~g~~~~a~~ 154 (156)
++.|++++|++
T Consensus 435 ~k~g~~~~A~~ 445 (857)
T PLN03077 435 SKCKCIDKALE 445 (857)
T ss_pred HHcCCHHHHHH
Confidence 55555555544
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.96 E-value=1.2e-28 Score=199.70 Aligned_cols=152 Identities=24% Similarity=0.432 Sum_probs=130.6
Q ss_pred CCCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCc-----------------------------------hHHHhHH
Q 041561 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND-----------------------------------IFVGSAP 46 (156)
Q Consensus 2 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-----------------------------------~~~~~~l 46 (156)
.||..+|+++|.+|++.|++++|.++|++|.+.|+.|| ..+||+|
T Consensus 186 ~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L 265 (697)
T PLN03081 186 ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL 265 (697)
T ss_pred CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH
Confidence 47888888888888888888888888888876665554 5556777
Q ss_pred HHHhhhcc-----------------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHH
Q 041561 47 INIYCNCG-----------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEV 109 (156)
Q Consensus 47 i~~~~~~~-----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 109 (156)
|++|+++| ++||+||.+|++.|++++|+++|++|.+.|+.||..||++++++|++.|++++|.
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 78888887 7999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccCCC-------------c-----------CCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 110 EIFNSMEHDHEVKPK-------------C-----------LMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 110 ~~~~~m~~~~~~~~~-------------c-----------~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
++|+.| .+.|+.++ | .+. +||..+||+||.+|+++|+.++|.++
T Consensus 346 ~i~~~m-~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 346 QAHAGL-IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred HHHHHH-HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHH
Confidence 999999 67787776 1 443 68888888888888888888888764
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.70 E-value=5.8e-17 Score=88.68 Aligned_cols=47 Identities=30% Similarity=0.588 Sum_probs=45.6
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH 101 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 101 (156)
.+||++|.+|++.|++++|+++|++|++.|+.||..||+.+|++|++
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999986
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.69 E-value=4.9e-17 Score=88.97 Aligned_cols=50 Identities=20% Similarity=0.331 Sum_probs=48.2
Q ss_pred CCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhh
Q 041561 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCN 52 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 52 (156)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||++||++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999998875
No 9
>PF12854 PPR_1: PPR repeat
Probab=99.25 E-value=7.3e-12 Score=62.59 Aligned_cols=33 Identities=27% Similarity=0.484 Sum_probs=31.9
Q ss_pred CCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 83 SGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 83 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
+|+.||.+|||+||+++++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 589999999999999999999999999999998
No 10
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=2.6e-10 Score=86.22 Aligned_cols=136 Identities=18% Similarity=0.110 Sum_probs=98.4
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-------------------------------
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------------------------- 54 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~------------------------------- 54 (156)
.|=|.+++. ...|.+..+--+++.|.+.|+..+..+--.|++..+-.+
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 344555554 567888899999999999998888888777776665444
Q ss_pred ------------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccC
Q 041561 55 ------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122 (156)
Q Consensus 55 ------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 122 (156)
.++.+||.+.|+--..+.|.+++++-.....+.+..+||.+|.+-+-..+ +++..+|....
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqk--- 268 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQK--- 268 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhh---
Confidence 78999999999999999999998887776666777777777766543333 55666663331
Q ss_pred CCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 123 PKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 123 ~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
++||..|+|+++++.++.|+++.|++.
T Consensus 269 ------m~Pnl~TfNalL~c~akfg~F~~ar~a 295 (625)
T KOG4422|consen 269 ------MTPNLFTFNALLSCAAKFGKFEDARKA 295 (625)
T ss_pred ------cCCchHhHHHHHHHHHHhcchHHHHHH
Confidence 567777777777777777777666543
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.7e-10 Score=87.10 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=100.8
Q ss_pred CCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
-+..||.++|.++++--..+.|.+++.+-.....+.+..+||.+|.+ ..|.. ..++..+|..
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~------------~S~~~------~K~Lv~EMis 266 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGA------------SSYSV------GKKLVAEMIS 266 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhH------------HHhhc------cHHHHHHHHH
Confidence 45689999999999999999999999998887788888666666542 22322 2788999999
Q ss_pred CCCCccHHHHHHHHHhhcCCCchHHHH----HHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhH
Q 041561 83 SGVKHDGVTFVAILTPCSHSGLVYAEV----EIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRL 151 (156)
Q Consensus 83 ~g~~p~~~t~~~ll~~~~~~~~~~~a~----~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~ 151 (156)
..+.||..|||+++++.++.|+++.++ +++.+| ++.| +.|...+|-.+|..+.+.+++.+
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~Em-KeiG--------VePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEM-KEIG--------VEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHH-HHhC--------CCcchhhHHHHHHHhcccCCchh
Confidence 999999999999999999999887755 677788 6666 79999999999999999998865
No 12
>PF12854 PPR_1: PPR repeat
Probab=99.17 E-value=3.8e-11 Score=59.98 Aligned_cols=34 Identities=32% Similarity=0.687 Sum_probs=31.4
Q ss_pred hCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041561 34 DGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDII 81 (156)
Q Consensus 34 ~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 81 (156)
.|+.||. .|||+||.+||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~--------------~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDV--------------VTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcH--------------hHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999 888999999999999999999999984
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.15 E-value=1.5e-09 Score=82.67 Aligned_cols=139 Identities=8% Similarity=-0.097 Sum_probs=74.9
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCch----HHHhHHHHHhhhcc--------------------chHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDI----FVGSAPINIYCNCG--------------------VTWNEM 60 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~--------------------~~~~~l 60 (156)
..++..+...+.+.|+.++|.+.++.+.+.+..++. ..+..+...+.+.| ..+..+
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 220 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILL 220 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH
Confidence 345556666666666666666666666554322211 12233333444443 344455
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHH
Q 041561 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140 (156)
Q Consensus 61 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li 140 (156)
...|.+.|++++|.++|+++.+.+......+++.+..++.+.|+.++|...++.+.. ..|+...++.+.
T Consensus 221 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-----------~~p~~~~~~~la 289 (389)
T PRK11788 221 GDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE-----------EYPGADLLLALA 289 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCCchHHHHHH
Confidence 566666666666666666665433222234555666666666666666666666522 234545555666
Q ss_pred HHHhhcCCHhHHhh
Q 041561 141 SSCQVHSNVRLAKK 154 (156)
Q Consensus 141 ~~~~~~g~~~~a~~ 154 (156)
..+.+.|++++|.+
T Consensus 290 ~~~~~~g~~~~A~~ 303 (389)
T PRK11788 290 QLLEEQEGPEAAQA 303 (389)
T ss_pred HHHHHhCCHHHHHH
Confidence 66666666666654
No 14
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=99.05 E-value=3.6e-10 Score=56.43 Aligned_cols=35 Identities=34% Similarity=0.683 Sum_probs=33.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccH
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDG 89 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 89 (156)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.98 E-value=3.4e-08 Score=75.14 Aligned_cols=109 Identities=8% Similarity=0.035 Sum_probs=55.5
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCc---hHHHhHHHHHhhhcc--------------------chHHHHHHH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND---IFVGSAPINIYCNCG--------------------VTWNEMIHG 63 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~--------------------~~~~~li~~ 63 (156)
++..+...+.+.|++++|..+++.+...+-.++ ...+..+...|.+.| .+++.+...
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~ 150 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEI 150 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455555555666666666666666555432111 234455555555544 345555555
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccH----HHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDG----VTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
+.+.|++++|.+.|+.+.+.+..++. ..+..+...+.+.|++++|...|+++
T Consensus 151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 151 YQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 55666666666666655544322211 12333444445555555555555555
No 16
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.94 E-value=2e-09 Score=53.51 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=31.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH 87 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 87 (156)
++||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999988
No 17
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.84 E-value=5.1e-09 Score=52.13 Aligned_cols=35 Identities=11% Similarity=0.312 Sum_probs=33.3
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCch
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDI 40 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 40 (156)
.|||++|++|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999984
No 18
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.81 E-value=7.7e-09 Score=51.33 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=32.4
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCC
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN 38 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~ 38 (156)
+.||+++|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999988
No 19
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.81 E-value=7.7e-09 Score=50.19 Aligned_cols=31 Identities=29% Similarity=0.672 Sum_probs=28.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
++||+||++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998874
No 20
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.79 E-value=3.2e-07 Score=75.68 Aligned_cols=58 Identities=9% Similarity=-0.034 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
|..+...+...|++++|.++++.+.+.+ .++...+..+...+.+.|++++|...+..+
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444444443332 122333333334444444444444444443
No 21
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.75 E-value=5.3e-08 Score=79.21 Aligned_cols=151 Identities=10% Similarity=0.069 Sum_probs=116.5
Q ss_pred CCCCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc----------chHHHHHHHHHcCCCH
Q 041561 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------VTWNEMIHGYAENEYV 70 (156)
Q Consensus 1 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----------~~~~~li~~~~~~g~~ 70 (156)
+.|+-+||..+|..|+..|+++.|- +|..|.....+.+-..++.++.++.+.+ .+|++|+.+|..+||+
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDl 99 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDL 99 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccch
Confidence 4699999999999999999999999 9999988777777777888888877776 6788888888887774
Q ss_pred H---HHHHHHHH--------------------------------------------------------------------
Q 041561 71 E---QAISLYKD-------------------------------------------------------------------- 79 (156)
Q Consensus 71 ~---~a~~~~~~-------------------------------------------------------------------- 79 (156)
. .+.+.+..
T Consensus 100 i~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLr 179 (1088)
T KOG4318|consen 100 ILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLR 179 (1088)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHH
Confidence 3 22221111
Q ss_pred --------------HHHCCC-CccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC--------c-----------
Q 041561 80 --------------IIASGV-KHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK--------C----------- 125 (156)
Q Consensus 80 --------------m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------c----------- 125 (156)
|-+++. .||..+|.++++.-..+|+.+.|..++..| ++.|++-. |
T Consensus 180 qnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em-ke~gfpir~HyFwpLl~g~~~~q~~e~v 258 (1088)
T KOG4318|consen 180 QNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM-KEKGFPIRAHYFWPLLLGINAAQVFEFV 258 (1088)
T ss_pred HhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH-HHcCCCcccccchhhhhcCccchHHHHH
Confidence 111112 489999999999999999999999999999 66666655 2
Q ss_pred -----CCCCCCChhhHHHHHHHHhhcCCHhHHh
Q 041561 126 -----LMPYKDDLVVWGDLVSSCQVHSNVRLAK 153 (156)
Q Consensus 126 -----~~~~~pd~~~~~~li~~~~~~g~~~~a~ 153 (156)
..++.||..|+...+-.+..+|....+.
T Consensus 259 lrgmqe~gv~p~seT~adyvip~l~N~~t~~~~ 291 (1088)
T KOG4318|consen 259 LRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE 291 (1088)
T ss_pred HHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc
Confidence 6678899999999888888877765543
No 22
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.74 E-value=7.6e-07 Score=73.49 Aligned_cols=136 Identities=10% Similarity=-0.028 Sum_probs=79.4
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYA 65 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~ 65 (156)
..+..+...+.+.|+.++|..+++.+.+. .+.+...|..+...|.+.| ..|..+...+.
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 646 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYA 646 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34445555666666666666666666543 2345556666666666555 34556666666
Q ss_pred cCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhh
Q 041561 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV 145 (156)
Q Consensus 66 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~ 145 (156)
+.|++++|.+.|+++.+.. ..+..++..+...+...|++++|.++++.+.... .++...|..+...+..
T Consensus 647 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 647 VMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH----------PKAALGFELEGDLYLR 715 (899)
T ss_pred HcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------cCChHHHHHHHHHHHH
Confidence 6777777777776665532 2235566666777777777777777777774331 2344445555555555
Q ss_pred cCCHhHHh
Q 041561 146 HSNVRLAK 153 (156)
Q Consensus 146 ~g~~~~a~ 153 (156)
.|++++|.
T Consensus 716 ~g~~~~A~ 723 (899)
T TIGR02917 716 QKDYPAAI 723 (899)
T ss_pred CCCHHHHH
Confidence 55555554
No 23
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.55 E-value=1.1e-07 Score=45.99 Aligned_cols=31 Identities=10% Similarity=0.315 Sum_probs=29.3
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGY 36 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 36 (156)
+||+++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999999875
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.46 E-value=1.1e-06 Score=64.31 Aligned_cols=142 Identities=12% Similarity=0.024 Sum_probs=71.3
Q ss_pred CCcccHHHHHHHhcCCCchHHHHHHHHHHHHhC-CCCchHHHhHHHHHhhhcc--------------------chHHHHH
Q 041561 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG--------------------VTWNEMI 61 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~--------------------~~~~~li 61 (156)
+++..+...+..+.+.++.+.+..+++.+.+.. .++|...|..+-..+.+.| ...+.++
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~ 187 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALA 187 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 445566677777788888888888888876533 4566766666666666665 3455666
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHH
Q 041561 62 HGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141 (156)
Q Consensus 62 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~ 141 (156)
..+...|+.+++.++++...+.. ..|...+..+-.++...|+.++|...++...+. .+.|......+-.
T Consensus 188 ~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~----------~p~d~~~~~~~a~ 256 (280)
T PF13429_consen 188 WLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL----------NPDDPLWLLAYAD 256 (280)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH----------STT-HHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc----------ccccccccccccc
Confidence 66666666666666666655443 334445555666666666677777666666332 1235666666667
Q ss_pred HHhhcCCHhHHhhh
Q 041561 142 SCQVHSNVRLAKKA 155 (156)
Q Consensus 142 ~~~~~g~~~~a~~~ 155 (156)
++...|+.++|.++
T Consensus 257 ~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 257 ALEQAGRKDEALRL 270 (280)
T ss_dssp HHT-----------
T ss_pred cccccccccccccc
Confidence 77777777777654
No 25
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.44 E-value=3e-06 Score=59.26 Aligned_cols=104 Identities=14% Similarity=0.100 Sum_probs=82.1
Q ss_pred CcccHHHHHHHhc-----CCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcC--CCHHHHHHH
Q 041561 4 TQFPFTTVLSSCA-----KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAEN--EYVEQAISL 76 (156)
Q Consensus 4 ~~~t~~~ll~~~~-----~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~--g~~~~a~~~ 76 (156)
|-.+|..+++.+. +.|.++-....+..|.+.|+.-|..+|+.||+.+=+....=.+++.+-..+ .+.+-|.++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 4456777777775 447788899999999999999999999999999998763222233332222 246779999
Q ss_pred HHHHHHCCCCccHHHHHHHHHhhcCCCchHH
Q 041561 77 YKDIIASGVKHDGVTFVAILTPCSHSGLVYA 107 (156)
Q Consensus 77 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 107 (156)
+++|..+|+.||..|+..+++.+.+.+..-.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~ 156 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHPMK 156 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHHHH
Confidence 9999999999999999999999998775543
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.40 E-value=3.8e-05 Score=53.44 Aligned_cols=137 Identities=10% Similarity=0.001 Sum_probs=71.8
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHc
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAE 66 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~ 66 (156)
.+..+-..+.+.|+.++|...+++..+.. +.+...+..+-..|...| ..+..+-..+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 111 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 34445555666666677776666665432 223444455555554444 334445555666
Q ss_pred CCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhh
Q 041561 67 NEYVEQAISLYKDIIASGVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV 145 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~ 145 (156)
.|++++|.+.|++.......| +...+..+-..+.+.|+.++|.+.++..... ...+...|..+-..+..
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI----------DPQRPESLLELAELYYL 181 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CcCChHHHHHHHHHHHH
Confidence 666666666666665432111 2233444455555666666666666655322 11233445555555555
Q ss_pred cCCHhHHhh
Q 041561 146 HSNVRLAKK 154 (156)
Q Consensus 146 ~g~~~~a~~ 154 (156)
.|++++|.+
T Consensus 182 ~~~~~~A~~ 190 (234)
T TIGR02521 182 RGQYKDARA 190 (234)
T ss_pred cCCHHHHHH
Confidence 666655543
No 27
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.39 E-value=2.6e-06 Score=53.55 Aligned_cols=87 Identities=10% Similarity=0.190 Sum_probs=67.9
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhCC-CCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 041561 9 TTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKH 87 (156)
Q Consensus 9 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 87 (156)
..-|..|...++......+|..+++.|+ .|+..+|+.++.+-++... +...-.+.+-+.+.+|+.|..++++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~l------D~~~ie~kl~~LLtvYqDiL~~~lKP 102 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKREL------DSEDIENKLTNLLTVYQDILSNKLKP 102 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccc------cchhHHHHHHHHHHHHHHHHHhccCC
Confidence 4456677777999999999999999999 8999777777766655441 00122223556889999999999999
Q ss_pred cHHHHHHHHHhhcC
Q 041561 88 DGVTFVAILTPCSH 101 (156)
Q Consensus 88 ~~~t~~~ll~~~~~ 101 (156)
+..||+.++..+.+
T Consensus 103 ~~etYnivl~~Llk 116 (120)
T PF08579_consen 103 NDETYNIVLGSLLK 116 (120)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999998764
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.36 E-value=5.6e-05 Score=52.56 Aligned_cols=139 Identities=9% Similarity=0.013 Sum_probs=105.6
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc----------------------chHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------------VTWNEMIH 62 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----------------------~~~~~li~ 62 (156)
...+..+-..+...|+.++|.+.++...+..- .+...+..+-..|...| ..+..+-.
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL 143 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 45566777788889999999999998877542 34455666666666655 24556677
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHH
Q 041561 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSS 142 (156)
Q Consensus 63 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~ 142 (156)
.+...|++++|.+.|++..+... .+...+..+...+.+.|+.++|...+++.... ...+...+..+...
T Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~~~~~ 212 (234)
T TIGR02521 144 CALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARAYLERYQQT----------YNQTAESLWLGIRI 212 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHH
Confidence 88899999999999999876532 24557778888889999999999999988433 13466777788899
Q ss_pred HhhcCCHhHHhhh
Q 041561 143 CQVHSNVRLAKKA 155 (156)
Q Consensus 143 ~~~~g~~~~a~~~ 155 (156)
+...|+.++|++.
T Consensus 213 ~~~~~~~~~a~~~ 225 (234)
T TIGR02521 213 ARALGDVAAAQRY 225 (234)
T ss_pred HHHHhhHHHHHHH
Confidence 9999999998764
No 29
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.21 E-value=2e-05 Score=49.65 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=65.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CccHHHHHHHHHhhcCCC--------chHHHHHHHHhcccccccCCCcC
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGV-KHDGVTFVAILTPCSHSG--------LVYAEVEIFNSMEHDHEVKPKCL 126 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~c~ 126 (156)
|-...|..+...+++.....+|+.++++|+ .|+..+|+.++++.++.. .+-+...+++.|... +
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~------ 99 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-K------ 99 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-c------
Confidence 445567777778999999999999999999 999999999999988533 344566778888433 2
Q ss_pred CCCCCChhhHHHHHHHHhh
Q 041561 127 MPYKDDLVVWGDLVSSCQV 145 (156)
Q Consensus 127 ~~~~pd~~~~~~li~~~~~ 145 (156)
++|+..|||.+|....+
T Consensus 100 --lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 100 --LKPNDETYNIVLGSLLK 116 (120)
T ss_pred --cCCcHHHHHHHHHHHHH
Confidence 89999999999988654
No 30
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.20 E-value=2e-05 Score=60.90 Aligned_cols=119 Identities=12% Similarity=0.082 Sum_probs=90.3
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhC--CCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDG--YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
......++..+...-+++.++.++-..+... ...-. .|..++|+.|-+.|..++++++++.=..
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~--------------~t~ha~vR~~l~~~~~~~~l~~L~n~~~ 131 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLP--------------STHHALVRQCLELGAEDELLELLKNRLQ 131 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccC--------------ccHHHHHHHHHhcCCHHHHHHHHhChhh
Confidence 3455666666666667777777777665431 11111 5667999999999999999999999888
Q ss_pred CCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhc
Q 041561 83 SGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVH 146 (156)
Q Consensus 83 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~ 146 (156)
-|+-||.+|||.+++.+.+.|++..|.++...|..+- ...+..|+.--+.+|.+.
T Consensus 132 yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe---------~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 132 YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQE---------EFDNPSTQALALYSCYKY 186 (429)
T ss_pred cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhh---------ccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999885442 234556666666666554
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.18 E-value=7.2e-06 Score=60.06 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=47.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
.|..+-..+.+.|+.++|.+.|++..+. .| |....+.++..+...|+.+++.+++....+. ...|..
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~----------~~~~~~ 215 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA----------APDDPD 215 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-----------HTSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH----------CcCHHH
Confidence 3444455555566666666666665542 33 2444555566666666666666666655333 234555
Q ss_pred hHHHHHHHHhhcCCHhHHhh
Q 041561 135 VWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~ 154 (156)
.|..+-.+|...|+.++|..
T Consensus 216 ~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHH
T ss_pred HHHHHHHHhccccccccccc
Confidence 66666666666666666654
No 32
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.10 E-value=4.4e-05 Score=56.17 Aligned_cols=126 Identities=11% Similarity=0.161 Sum_probs=93.9
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhC-CCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASG 84 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 84 (156)
.+|..+|+..-|.+.++.|+++|.+..+.+ ....++...++|. |...++.+.|.++|+...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E---------------~~~~~d~~~A~~Ife~glk~- 65 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME---------------YYCNKDPKRARKIFERGLKK- 65 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH---------------HHTCS-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH---------------HHhCCCHHHHHHHHHHHHHH-
Confidence 578899999999999999999999998654 3456655555543 23356777799999998765
Q ss_pred CCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-ChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 85 VKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 85 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
+..+...|...++.+.+.++.+.++.+|+....... -.. -...|..+|+--.+.|+.+...+|
T Consensus 66 f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~--------~~~~~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 66 FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLP--------KEKQSKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSS--------CHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC--------chhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455677888999999999999999999999854411 122 335999999999999999877664
No 33
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.04 E-value=0.00036 Score=57.22 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
+..+-..+...|++++|...+++..+.... +...+..+-..+.+.|++++|.+.++.+
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 334444444444444444444444432111 1222333344444445555555444444
No 34
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.98 E-value=3.9e-05 Score=59.30 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=76.9
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
.|..++++.|.+.|..+.+..++..=.+.|+=||. .+||.||+.+.+.|++..|.++..+|...+.
T Consensus 104 ~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~--------------~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~ 169 (429)
T PF10037_consen 104 STHHALVRQCLELGAEDELLELLKNRLQYGIFPDN--------------FSFNLLMDHFLKKGNYKSAAKVATEMMLQEE 169 (429)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh--------------hhHHHHHHHHhhcccHHHHHHHHHHHHHhhc
Confidence 46689999999999999999999999999999999 8888889999999999999999999999888
Q ss_pred CccHHHHHHHHHhhcCC
Q 041561 86 KHDGVTFVAILTPCSHS 102 (156)
Q Consensus 86 ~p~~~t~~~ll~~~~~~ 102 (156)
..+..|+...+.+|.+-
T Consensus 170 ~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 170 FDNPSTQALALYSCYKY 186 (429)
T ss_pred cCCchHHHHHHHHHHHh
Confidence 88889998888888776
No 35
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.93 E-value=0.00015 Score=50.95 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=71.4
Q ss_pred chHHHHHHHHH-----cCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCC----------------chHHHHHHHH
Q 041561 55 VTWNEMIHGYA-----ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG----------------LVYAEVEIFN 113 (156)
Q Consensus 55 ~~~~~li~~~~-----~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------------~~~~a~~~~~ 113 (156)
.+|..+++.|. ++|.++=...-++.|.+-|+.-|..+|+.||+.+=+.. +-+-|.++++
T Consensus 48 ~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~ 127 (228)
T PF06239_consen 48 ATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLE 127 (228)
T ss_pred HHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHH
Confidence 34444444444 56788888889999999999999999999999886633 5667889999
Q ss_pred hcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhH
Q 041561 114 SMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRL 151 (156)
Q Consensus 114 ~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~ 151 (156)
+| +++| +-||..|+..+++.|.+.+.+-+
T Consensus 128 qM-E~~g--------V~Pd~Et~~~ll~iFG~~s~p~~ 156 (228)
T PF06239_consen 128 QM-ENNG--------VMPDKETEQMLLNIFGRKSHPMK 156 (228)
T ss_pred HH-HHcC--------CCCcHHHHHHHHHHhccccHHHH
Confidence 99 7887 68999999999999999887643
No 36
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.91 E-value=0.00084 Score=55.11 Aligned_cols=100 Identities=8% Similarity=-0.087 Sum_probs=45.7
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHcCCCHHH
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAENEYVEQ 72 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~g~~~~ 72 (156)
.+....|+.+.|...++.+.+.. +.+...+..+-..+.+.| ..|..+...+...|++++
T Consensus 84 ~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 84 ISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred hhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHH
Confidence 33344555555555555554431 112333444444444444 344555555555566666
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 73 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
|...++.+......+....++ + ..+.+.|++++|..+++.+
T Consensus 163 A~~~~~~~~~~~P~~~~a~~~-~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 163 AISLARTQAQEVPPRGDMIAT-C-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHH-H-HHHHHcCCHHHHHHHHHHH
Confidence 655555554432222222111 1 1234455555555555554
No 37
>PRK12370 invasion protein regulator; Provisional
Probab=97.89 E-value=0.00083 Score=54.04 Aligned_cols=108 Identities=8% Similarity=-0.092 Sum_probs=58.2
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYA 65 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~ 65 (156)
..+..+-..+...|+.++|...+++..+.. +.+...+..+-..|...| ..+..+...+.
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 344455555667788888888888877653 223444444444455544 11222333344
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 66 ENEYVEQAISLYKDIIASGVKHD-GVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 66 ~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
..|++++|.+.+++..+.. .|+ ...+..+-.++...|+.++|.+.+..+
T Consensus 418 ~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred hccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 5566666666666654432 222 223344444555666666666666655
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=97.87 E-value=4.8e-05 Score=62.63 Aligned_cols=90 Identities=13% Similarity=0.135 Sum_probs=79.4
Q ss_pred CCCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041561 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDII 81 (156)
Q Consensus 2 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 81 (156)
.||+.+|..++++-.-+|+++.|..++.+|++.|++-+. +-|.-||-+ .+....+..+.+.|.
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~--------------HyFwpLl~g---~~~~q~~e~vlrgmq 263 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA--------------HYFWPLLLG---INAAQVFEFVLRGMQ 263 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc--------------ccchhhhhc---CccchHHHHHHHHHH
Confidence 389999999999999999999999999999999998888 666666655 888899999999999
Q ss_pred HCCCCccHHHHHHHHHhhcCCCchHHH
Q 041561 82 ASGVKHDGVTFVAILTPCSHSGLVYAE 108 (156)
Q Consensus 82 ~~g~~p~~~t~~~ll~~~~~~~~~~~a 108 (156)
+.|+.|+..|+.-.+-.+..+|....+
T Consensus 264 e~gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 264 EKGVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred HhcCCCCcchhHHHHHhhhcchhhhhc
Confidence 999999999999999988886664433
No 39
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.86 E-value=0.0011 Score=53.94 Aligned_cols=135 Identities=7% Similarity=-0.062 Sum_probs=93.6
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCc-hHHHhHHHHHhhhcc--------------------chHHHHHHHHH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND-IFVGSAPINIYCNCG--------------------VTWNEMIHGYA 65 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~--------------------~~~~~li~~~~ 65 (156)
.|..+-..+...|+.++|...++...+. .|+ ...|..+-..|...| ..|..+-..+.
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444555556678888888888877654 243 335555555555444 56677777888
Q ss_pred cCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhh
Q 041561 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV 145 (156)
Q Consensus 66 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~ 145 (156)
..|++++|.+.|++..+... .+...+..+-..+.+.|++++|...|+..... ...+...|+.+-..+..
T Consensus 411 ~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~----------~P~~~~~~~~lg~~~~~ 479 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN----------FPEAPDVYNYYGELLLD 479 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCCChHHHHHHHHHHHH
Confidence 88888888888888776431 23455666667777888999999888887433 22356778888888999
Q ss_pred cCCHhHHhh
Q 041561 146 HSNVRLAKK 154 (156)
Q Consensus 146 ~g~~~~a~~ 154 (156)
.|++++|.+
T Consensus 480 ~g~~~~A~~ 488 (615)
T TIGR00990 480 QNKFDEAIE 488 (615)
T ss_pred ccCHHHHHH
Confidence 999998865
No 40
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.78 E-value=0.0011 Score=51.04 Aligned_cols=116 Identities=11% Similarity=0.029 Sum_probs=89.0
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc
Q 041561 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD 88 (156)
Q Consensus 9 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 88 (156)
.++++.+...++++.|..+++++.+.. |++ .-.|.+.+...++-.+|.++.++..+.. .-|
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev----------------~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d 233 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV----------------AVLLARVYLLMNEEVEAIRLLNEALKEN-PQD 233 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH----------------HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCC
Confidence 456777778899999999999998865 443 2335566666777888999888887542 224
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCCh-hhHHHHHHHHhhcCCHhHHhh
Q 041561 89 GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDL-VVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~-~~~~~li~~~~~~g~~~~a~~ 154 (156)
......-.+.|.+.++.+.|..+.++.. + +.|+. .+|..|..+|...|+++.|..
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av-~----------lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAV-E----------LSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH-H----------hCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 5566666677889999999999999884 3 45655 599999999999999999974
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.76 E-value=0.0011 Score=51.24 Aligned_cols=119 Identities=11% Similarity=-0.029 Sum_probs=84.8
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
.........+.+.|+.++|.++++...+. .||.. -.++.+....++++++.+..+...+.
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~----------------l~~l~~~l~~~~~~~al~~~e~~lk~-- 323 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER----------------LVLLIPRLKTNNPEQLEKVLRQQIKQ-- 323 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH----------------HHHHHhhccCCChHHHHHHHHHHHhh--
Confidence 34444555555666666666666555442 22221 11234444568999999999998864
Q ss_pred CccHH-HHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 86 KHDGV-TFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 86 ~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.|+.. ...++=+.|.+.+++++|++.|+...+ ..|+..+|..|-..+.+.|+.++|.+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-----------~~P~~~~~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-----------QRPDAYDYAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----------cCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444 566777888899999999999999843 479999999999999999999999763
No 42
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.71 E-value=0.0028 Score=48.10 Aligned_cols=141 Identities=9% Similarity=0.002 Sum_probs=100.7
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCch-------HHHhHHHHHhhhcc--------------------ch
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDI-------FVGSAPINIYCNCG--------------------VT 56 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~~--------------------~~ 56 (156)
++.......++|.+.|++..+..+...|.+.|+-.|. .+|+.+++-....+ ..
T Consensus 186 ~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l 265 (400)
T COG3071 186 HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPEL 265 (400)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhH
Confidence 3456677889999999999999999999999976655 56777776655544 23
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccH------------------------------HHHHHHHHhhcCCCchH
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDG------------------------------VTFVAILTPCSHSGLVY 106 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------------------------------~t~~~ll~~~~~~~~~~ 106 (156)
-.+++.-+.++|+.++|.++..+-.+++..|+. -.+.++=.-|.+.+.+.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence 355677778888888888887776655544431 23333444444555555
Q ss_pred HHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 107 AEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 107 ~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
+|...|+.- ...+|+..+|+-+=.+|.+.|++++|.++
T Consensus 346 kA~~~leaA-----------l~~~~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 346 KASEALEAA-----------LKLRPSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred HHHHHHHHH-----------HhcCCChhhHHHHHHHHHHcCChHHHHHH
Confidence 555555533 34689999999999999999999998764
No 43
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.70 E-value=0.00024 Score=46.03 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=53.2
Q ss_pred cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC---------cCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 88 DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK---------CLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---------c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
|+.++.++|-++++.|+++....+.+.. .||..+ .+++..|+..+..+++.+|+.+|++..|.++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~ 74 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKL 74 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHH
Confidence 5677888888889999988888887644 444433 2677899999999999999999999999886
No 44
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.66 E-value=0.0032 Score=53.92 Aligned_cols=46 Identities=17% Similarity=0.036 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 68 EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 68 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
|++++|...|++..+. .|+...+..+-..+.+.|+.++|...++..
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555555555555442 234445555555555555555555555554
No 45
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.66 E-value=0.0036 Score=50.98 Aligned_cols=146 Identities=10% Similarity=0.014 Sum_probs=73.3
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHc
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAE 66 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~ 66 (156)
+|..+-..+...|++++|...|+...+.. +.+..+|..+-..|...| ..|..+-..+.+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 44444555556666666666666654432 223445555555555544 233444445555
Q ss_pred CCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccc-cccCC---C------------------
Q 041561 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD-HEVKP---K------------------ 124 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~---~------------------ 124 (156)
.|++++|...|++..+.. .-+...++.+-..+...|++++|...|+.-... ....+ +
T Consensus 446 ~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhH
Confidence 555555555555554321 112334444444555555555555554442111 00000 0
Q ss_pred ------c--CCCCCC-ChhhHHHHHHHHhhcCCHhHHhh
Q 041561 125 ------C--LMPYKD-DLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 125 ------c--~~~~~p-d~~~~~~li~~~~~~g~~~~a~~ 154 (156)
| .....| +...+..+-..+...|++++|.+
T Consensus 525 ~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 525 IEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 0 011223 44568888889999999988865
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.64 E-value=0.0041 Score=48.07 Aligned_cols=129 Identities=5% Similarity=0.019 Sum_probs=78.2
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCchHHHh--HHHHHhhhcc--------------------chHHHHHHHHHcCCCHHH
Q 041561 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGS--APINIYCNCG--------------------VTWNEMIHGYAENEYVEQ 72 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~~--------------------~~~~~li~~~~~~g~~~~ 72 (156)
..+.|+.+.+...+.++.+. .|+....- .....+...| .....+...|.+.|++++
T Consensus 128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 128 AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence 35667777777777777553 34443222 2223344344 455667777777777777
Q ss_pred HHHHHHHHHHCCCCccH-------HHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhh
Q 041561 73 AISLYKDIIASGVKHDG-------VTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV 145 (156)
Q Consensus 73 a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~ 145 (156)
+.+++..+.+.+..++. .+|..++....+..+.+...++++.+.++ .+.+......+..++..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~----------~~~~~~~~~~~A~~l~~ 275 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK----------TRHQVALQVAMAEHLIE 275 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH----------HhCCHHHHHHHHHHHHH
Confidence 77777777776544322 13333344434444555566666666443 34577778888888888
Q ss_pred cCCHhHHhhh
Q 041561 146 HSNVRLAKKA 155 (156)
Q Consensus 146 ~g~~~~a~~~ 155 (156)
.|+.++|.++
T Consensus 276 ~g~~~~A~~~ 285 (398)
T PRK10747 276 CDDHDTAQQI 285 (398)
T ss_pred CCCHHHHHHH
Confidence 8888888764
No 47
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.64 E-value=0.0017 Score=48.12 Aligned_cols=88 Identities=8% Similarity=0.033 Sum_probs=63.1
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHH----HHhhcCCCchHHHHHHHHhcccccccCCCcCCCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI----LTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYK 130 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l----l~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~ 130 (156)
+.....+..|.+.++++.|.+.++.|.+.. .|. +...+ ++.......+.+|..+|+++..+ ..
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~----------~~ 198 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK----------FG 198 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC----------S-
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc----------cC
Confidence 555667888999999999999999998642 333 33333 33333345799999999999554 45
Q ss_pred CChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 131 DDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 131 pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
++..+.|.+..+....|++++|+++
T Consensus 199 ~t~~~lng~A~~~l~~~~~~eAe~~ 223 (290)
T PF04733_consen 199 STPKLLNGLAVCHLQLGHYEEAEEL 223 (290)
T ss_dssp -SHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 7888899999999999999999864
No 48
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.62 E-value=0.0049 Score=52.83 Aligned_cols=139 Identities=12% Similarity=0.005 Sum_probs=97.0
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-------------------chHHHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------------VTWNEMIHGY 64 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-------------------~~~~~li~~~ 64 (156)
+...+..+-..+.+.|+.+.|.+.+....+.. +++...+..+.....+.| ..|..+-..+
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l 619 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIY 619 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 33344445556677788888888888776654 122222222222221123 4677778889
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccH-HHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHH
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDG-VTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~ 143 (156)
.+.|++++|.+.|++..+. .|+. ..++.+-.++...|+.++|...++...+. ..-+...+..+=.++
T Consensus 620 ~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l----------~P~~~~a~~nLA~al 687 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKG----------LPDDPALIRQLAYVN 687 (987)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHH
Confidence 9999999999999998874 4444 45666667888999999999999988443 123667888999999
Q ss_pred hhcCCHhHHhhh
Q 041561 144 QVHSNVRLAKKA 155 (156)
Q Consensus 144 ~~~g~~~~a~~~ 155 (156)
...|++++|++.
T Consensus 688 ~~lGd~~eA~~~ 699 (987)
T PRK09782 688 QRLDDMAATQHY 699 (987)
T ss_pred HHCCCHHHHHHH
Confidence 999999998753
No 49
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.59 E-value=0.00049 Score=44.60 Aligned_cols=99 Identities=8% Similarity=0.063 Sum_probs=62.8
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
|..++..+|-++++.|+++..+.+.+.. .|+.++.. ...+. --..+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~-----------------------~~~~~---------~~~~s 46 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGK-----------------------KKEGD---------YPPSS 46 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCc-----------------------cccCc---------cCCCC
Confidence 3456677777777777777766666432 34333320 01111 11124
Q ss_pred CCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHh
Q 041561 84 GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQ 144 (156)
Q Consensus 84 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~ 144 (156)
...|+..+..+++.+++..+++..|.++.+.+.+.++ +.-+..+|..|++=.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~--------I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP--------IPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHH
Confidence 5778888888888888888888888888888877776 3445777777775443
No 50
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.58 E-value=0.00093 Score=48.97 Aligned_cols=87 Identities=13% Similarity=0.072 Sum_probs=72.4
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-chHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCCccHHHHHHHH
Q 041561 19 SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-VTWNEMIHGYAENEY-VEQAISLYKDIIASGVKHDGVTFVAIL 96 (156)
Q Consensus 19 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~ll 96 (156)
+.++-....+..|.+.|+..|..+|+.||+.+=+.. ..-|.+-..|.+.-+ -+=+.+++++|...|+.||..+--.++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 557777788889999999999999999999999988 445555555665543 345789999999999999999999999
Q ss_pred HhhcCCCch
Q 041561 97 TPCSHSGLV 105 (156)
Q Consensus 97 ~~~~~~~~~ 105 (156)
+++.+.+-.
T Consensus 166 n~FGr~~~p 174 (406)
T KOG3941|consen 166 NAFGRWNFP 174 (406)
T ss_pred HHhcccccc
Confidence 999987744
No 51
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.55 E-value=0.00084 Score=39.25 Aligned_cols=89 Identities=10% Similarity=0.049 Sum_probs=69.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhh
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVV 135 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~ 135 (156)
.|..+...+...|++++|.+.|++..+... .+...+..+...+...++.++|.+.++..... ...+..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~ 70 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALEL----------DPDNAKA 70 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCcchhH
Confidence 355667778889999999999999876532 23366777888888899999999999987433 2335568
Q ss_pred HHHHHHHHhhcCCHhHHhhh
Q 041561 136 WGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~~ 155 (156)
+..+...+...|+.++|.+.
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~ 90 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEA 90 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 88888999999999988753
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.55 E-value=0.005 Score=47.72 Aligned_cols=143 Identities=9% Similarity=-0.043 Sum_probs=88.6
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHH-------HhHHHHHhhhc-c-------------------ch
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFV-------GSAPINIYCNC-G-------------------VT 56 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-------~~~li~~~~~~-~-------------------~~ 56 (156)
++.....+...+.+.|+++.|.+++..+.+.++.+.... +..++..-... + ..
T Consensus 186 ~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l 265 (409)
T TIGR00540 186 HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIAL 265 (409)
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHH
Confidence 345677888889999999999999999998876443322 22222111110 1 34
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCC----------------------------------CCccHH---HHHHHHHhh
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASG----------------------------------VKHDGV---TFVAILTPC 99 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g----------------------------------~~p~~~---t~~~ll~~~ 99 (156)
+-.+...+...|+.++|.+++++..+.. ..|+.. ...++=..+
T Consensus 266 ~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~ 345 (409)
T TIGR00540 266 KIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLL 345 (409)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 5556667777777777777776655431 123332 222444555
Q ss_pred cCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 100 SHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 100 ~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.+.|++++|++.|+... .. ...||...+..+-..+-+.|+.++|.++
T Consensus 346 ~~~~~~~~A~~~le~a~-a~--------~~~p~~~~~~~La~ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 346 MKHGEFIEAADAFKNVA-AC--------KEQLDANDLAMAADAFDQAGDKAEAAAM 392 (409)
T ss_pred HHcccHHHHHHHHHHhH-Hh--------hcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56777777777777310 00 1367888888888888888888888754
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.55 E-value=0.0016 Score=51.71 Aligned_cols=146 Identities=12% Similarity=0.117 Sum_probs=99.9
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHH---h--CC-CCchHHHhH-HHHHhhhcc------------------------
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVK---D--GY-GNDIFVGSA-PINIYCNCG------------------------ 54 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~---~--g~-~~~~~~~~~-li~~~~~~~------------------------ 54 (156)
.+++-|-.+|.+.|++++|+..++...+ . |. .|.+..... +...++.-+
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 3555556678899999999888887543 1 21 233322222 222222222
Q ss_pred ----chHHHHHHHHHcCCCHHHHHHHHHHHHHC----C--CCcc-HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCC
Q 041561 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIAS----G--VKHD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP 123 (156)
Q Consensus 55 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g--~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 123 (156)
.+++.|-..|-+.|++++|.++|++.... + ..+. ...++-|-.+|.+.++.++|.++|.+-. . |..
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~-~--i~~ 440 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK-D--IMK 440 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH-H--HHH
Confidence 68899999999999999999999987531 1 2222 4567778888899999999999988652 1 112
Q ss_pred CcCCCCCCC-hhhHHHHHHHHhhcCCHhHHhhh
Q 041561 124 KCLMPYKDD-LVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 124 ~c~~~~~pd-~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.|+.. .|| ..+|.-|...|.+.|++|.|.++
T Consensus 441 ~~g~~-~~~~~~~~~nL~~~Y~~~g~~e~a~~~ 472 (508)
T KOG1840|consen 441 LCGPD-HPDVTYTYLNLAALYRAQGNYEAAEEL 472 (508)
T ss_pred HhCCC-CCchHHHHHHHHHHHHHcccHHHHHHH
Confidence 22232 344 47799999999999999999886
No 54
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.49 E-value=0.012 Score=38.91 Aligned_cols=125 Identities=9% Similarity=0.023 Sum_probs=86.3
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
.|..++... ..++...+...++.+.+..- .+.+ ..+ ..=.+-..+...|++++|...|+........
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~-~s~y--a~~---------A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d 80 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYP-SSPY--AAL---------AALQLAKAAYEQGDYDEAKAALEKALANAPD 80 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCC-CChH--HHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 455666666 47788888888888877532 1211 111 1123457788899999999999999987644
Q ss_pred ccHH--HHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 87 HDGV--TFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 87 p~~~--t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
|+.. ..-.+-..+...|++++|...++..... ......+...=..|.+.|+.++|+..
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~-----------~~~~~~~~~~Gdi~~~~g~~~~A~~~ 140 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQIPDE-----------AFKALAAELLGDIYLAQGDYDEARAA 140 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc-----------chHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4322 3444667788899999999999876321 23445566666899999999999863
No 55
>PRK12370 invasion protein regulator; Provisional
Probab=97.46 E-value=0.007 Score=48.80 Aligned_cols=127 Identities=9% Similarity=-0.051 Sum_probs=86.7
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHcCCCHHHHHHH
Q 041561 17 KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAENEYVEQAISL 76 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~g~~~~a~~~ 76 (156)
..++.++|...++...+.. +-+...+..+-..+...| ..|..+-..+...|++++|.+.
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3456788999999887753 225555665555555555 4677788889999999999999
Q ss_pred HHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCC-hhhHHHHHHHHhhcCCHhHHhhh
Q 041561 77 YKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD-LVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 77 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd-~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
+++..+-...+.. .+..+...+...|++++|...+++.... ..|+ ...+..+-..+...|+.++|++.
T Consensus 395 ~~~Al~l~P~~~~-~~~~~~~~~~~~g~~eeA~~~~~~~l~~----------~~p~~~~~~~~la~~l~~~G~~~eA~~~ 463 (553)
T PRK12370 395 INECLKLDPTRAA-AGITKLWITYYHTGIDDAIRLGDELRSQ----------HLQDNPILLSMQVMFLSLKGKHELARKL 463 (553)
T ss_pred HHHHHhcCCCChh-hHHHHHHHHHhccCHHHHHHHHHHHHHh----------ccccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9998875333212 2223344455678899999999887433 1343 34466666778889999999864
No 56
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.44 E-value=0.001 Score=37.79 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=49.9
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHH
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li 140 (156)
...|++++|.++|++....... |......+..+|.+.|++++|..+++.+... .||...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-----------~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ-----------DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG-----------GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------CcCHHHHHHHH
Confidence 4678999999999999876433 5566668999999999999999999999544 57755555554
No 57
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.38 E-value=0.0051 Score=45.58 Aligned_cols=120 Identities=8% Similarity=0.051 Sum_probs=79.5
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
......+..+.+.++++.|.+.++.|.+. ..|....+.. .+.+..+.-.+.+.+|..+|+++.+. .
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~l~qLa-----------~awv~l~~g~e~~~~A~y~f~El~~~-~ 197 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSILTQLA-----------EAWVNLATGGEKYQDAFYIFEELSDK-F 197 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHHHHHHH-----------HHHHHHHHTTTCCCHHHHHHHHHHCC-S
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH-----------HHHHHHHhCchhHHHHHHHHHHHHhc-c
Confidence 34456778888889999999999998764 3454332221 22233333345689999999998654 5
Q ss_pred CccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCH
Q 041561 86 KHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNV 149 (156)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~ 149 (156)
.++..+.|.+.-++...|++++|.+++.+-.... .-|..+..-+|-.....|+.
T Consensus 198 ~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~----------~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 198 GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD----------PNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp --SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-----------CCHHHHHHHHHHHHHHTT-T
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc----------cCCHHHHHHHHHHHHHhCCC
Confidence 6788889999999999999999999988763331 23455555567666677766
No 58
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.32 E-value=0.01 Score=42.83 Aligned_cols=121 Identities=11% Similarity=0.024 Sum_probs=91.4
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCc
Q 041561 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKH 87 (156)
Q Consensus 9 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p 87 (156)
+.......+.|++..|...+.+...- -++|+ ..||.+=.+|.+.|++++|..-|.+..+- +-.
T Consensus 104 ~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~--------------~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~- 167 (257)
T COG5010 104 AAQGKNQIRNGNFGEAVSVLRKAARL-APTDW--------------EAWNLLGAALDQLGRFDEARRAYRQALELAPNE- 167 (257)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhcc-CCCCh--------------hhhhHHHHHHHHccChhHHHHHHHHHHHhccCC-
Confidence 44677788899999999999988653 35677 77888888899999999999888887662 222
Q ss_pred cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhhC
Q 041561 88 DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKAA 156 (156)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~~ 156 (156)
....|.+--.+.-.|+.+.|+.++..-... -.-|...=.-+.......|++++|+.++
T Consensus 168 -p~~~nNlgms~~L~gd~~~A~~lll~a~l~----------~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 168 -PSIANNLGMSLLLRGDLEDAETLLLPAYLS----------PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred -chhhhhHHHHHHHcCCHHHHHHHHHHHHhC----------CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 234555555666789999999998877332 2347777777888889999999998875
No 59
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.31 E-value=0.012 Score=49.25 Aligned_cols=130 Identities=10% Similarity=-0.058 Sum_probs=81.3
Q ss_pred HhcCCCchHHHHHHHHHHHHhCCC-Cc-hHHHhHHHHHhhhcc------------------------chHHHHHHHHHcC
Q 041561 14 SCAKLSSLFLGRQILTRIVKDGYG-ND-IFVGSAPINIYCNCG------------------------VTWNEMIHGYAEN 67 (156)
Q Consensus 14 ~~~~~~~~~~a~~~~~~m~~~g~~-~~-~~~~~~li~~~~~~~------------------------~~~~~li~~~~~~ 67 (156)
++...|+.++|...|+.+.+.+-. |+ ...+ +-..|...| .....+..++...
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 344567888888888888776531 32 2222 233444444 0133345567788
Q ss_pred CCHHHHHHHHHHHHHCC-----------CCccH---HHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCCh
Q 041561 68 EYVEQAISLYKDIIASG-----------VKHDG---VTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDL 133 (156)
Q Consensus 68 g~~~~a~~~~~~m~~~g-----------~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~ 133 (156)
|++++|.++++.+.... -.|+. ..+..+...+...|++++|.++++.+... .+-+.
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~----------~P~n~ 393 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN----------APGNQ 393 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCH
Confidence 88888888888887642 12332 23445566777788888888888887443 23355
Q ss_pred hhHHHHHHHHhhcCCHhHHhhh
Q 041561 134 VVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 134 ~~~~~li~~~~~~g~~~~a~~~ 155 (156)
..+..+...+...|++++|+++
T Consensus 394 ~l~~~lA~l~~~~g~~~~A~~~ 415 (765)
T PRK10049 394 GLRIDYASVLQARGWPRAAENE 415 (765)
T ss_pred HHHHHHHHHHHhcCCHHHHHHH
Confidence 6777777777777777777653
No 60
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.001 Score=53.28 Aligned_cols=128 Identities=9% Similarity=0.072 Sum_probs=92.2
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHhC-C-CCchHHHhHHHHHhhhcc-----------------chHHHHHHHHHcCCCHH
Q 041561 11 VLSSCAKLSSLFLGRQILTRIVKDG-Y-GNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVE 71 (156)
Q Consensus 11 ll~~~~~~~~~~~a~~~~~~m~~~g-~-~~~~~~~~~li~~~~~~~-----------------~~~~~li~~~~~~g~~~ 71 (156)
+=++|-..++.++++++|+.+.+.. . .-+..+|++.+=-.-+.= .+|.++=++|+-.++.+
T Consensus 359 ~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~ 438 (638)
T KOG1126|consen 359 LGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHD 438 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHH
Confidence 3456777889999999999997643 3 346677776653222111 89999999999999999
Q ss_pred HHHHHHHHHHHCCCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHH---HHHhhcC
Q 041561 72 QAISLYKDIIASGVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV---SSCQVHS 147 (156)
Q Consensus 72 ~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li---~~~~~~g 147 (156)
.|++.|++-.+ +.| ..++|+.+=.=+.....+|.|...|+.- +..|.+.||++- ..|.+.+
T Consensus 439 ~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A-------------l~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 439 TAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA-------------LGVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred HHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh-------------hcCCchhhHHHHhhhhheeccc
Confidence 99999998765 445 5667776666666677888888888755 566777777765 4566666
Q ss_pred CHhHHh
Q 041561 148 NVRLAK 153 (156)
Q Consensus 148 ~~~~a~ 153 (156)
++|.|+
T Consensus 504 k~e~Ae 509 (638)
T KOG1126|consen 504 KLEFAE 509 (638)
T ss_pred hhhHHH
Confidence 666554
No 61
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.30 E-value=0.017 Score=48.49 Aligned_cols=131 Identities=11% Similarity=-0.032 Sum_probs=84.4
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHcCCC
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAENEY 69 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~g~ 69 (156)
-.+......|+.++|.+++....... +.+...+..+-..+.+.| ..+..+...+...|+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 34455555666666666666654411 223333444444444444 345567777888899
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-ChhhHHHHHHHHhhcCC
Q 041561 70 VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSSCQVHSN 148 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~~~~~g~ 148 (156)
+++|...+++..+. .|+...+..+-..+.+.|+.++|...+++..+. .| +...+..+..++...|+
T Consensus 99 ~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~-----------~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 99 YDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPR-----------APQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHCCC
Confidence 99999999988765 333222667777778889999999999888443 34 44556667777778888
Q ss_pred HhHHhh
Q 041561 149 VRLAKK 154 (156)
Q Consensus 149 ~~~a~~ 154 (156)
.++|.+
T Consensus 166 ~e~Al~ 171 (765)
T PRK10049 166 SAPALG 171 (765)
T ss_pred hHHHHH
Confidence 887764
No 62
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.28 E-value=0.0079 Score=38.78 Aligned_cols=96 Identities=8% Similarity=-0.032 Sum_probs=73.1
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
.....+...+.+.|+.++|...++...+.+ +.+. ..|..+-..+...|++++|.+.|++..+.+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~--------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNS--------------RYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 334555566778899999999999987754 2244 556677788888999999999999887654
Q ss_pred CccHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 86 KHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
..+..++..+-..+...|+.++|...|+...+
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455566666788899999999999998843
No 63
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.25 E-value=0.011 Score=51.73 Aligned_cols=92 Identities=13% Similarity=-0.003 Sum_probs=66.9
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC--
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-- 131 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-- 131 (156)
..+..+...|...|+.++|.+.++...+. .|+ ..+...+-.++.+.|+.++|.++++....... .-.|
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~-------~~~~~~ 708 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK-------SQPPSM 708 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc-------cCCcch
Confidence 56778888999999999999999987653 333 34455566777789999999999999854321 0112
Q ss_pred -ChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 132 -DLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 132 -d~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
+...+..+-..+...|++++|.+.
T Consensus 709 ~~a~~~~~~a~~~~~~G~~~~A~~~ 733 (1157)
T PRK11447 709 ESALVLRDAARFEAQTGQPQQALET 733 (1157)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 224555566788899999999764
No 64
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.23 E-value=0.015 Score=36.24 Aligned_cols=99 Identities=7% Similarity=-0.048 Sum_probs=73.4
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchH-HHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIF-VGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
++......+.+.|+.++|...++.+.+.. |+.. .- ..+..+-..+.+.|++++|.+.|+.......
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAP-----------NAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccH-----------HHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 45566677788999999999999997643 2210 00 2344577888999999999999999886432
Q ss_pred C--ccHHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 86 K--HDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 86 ~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
. ....++..+-..+.+.++.++|...++.....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 2 12455677777888999999999999998544
No 65
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.22 E-value=0.021 Score=48.21 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=82.2
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCch--HHHhHHHHHhhhcc------------------chHHHH--HHHHHcCCCHHHH
Q 041561 16 AKLSSLFLGRQILTRIVKDGYGNDI--FVGSAPINIYCNCG------------------VTWNEM--IHGYAENEYVEQA 73 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~~------------------~~~~~l--i~~~~~~g~~~~a 73 (156)
.+.|+.+.|...|.+..+.. |+. .++ .++..+...| ..+..+ ...|...|++++|
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 58888889999888887643 442 233 6677776666 122333 4477778999999
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHh
Q 041561 74 ISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAK 153 (156)
Q Consensus 74 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~ 153 (156)
.++|+++.+.... |...+..+...+...++.++|.+.++..... .|+...+..++..+...++..+|.
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-----------dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER-----------DPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-----------CcchHHHHHHHHHHHhcchHHHHH
Confidence 9999999875433 2344457778888899999999999988443 566666644444443344443343
No 66
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.20 E-value=0.036 Score=43.03 Aligned_cols=25 Identities=8% Similarity=-0.023 Sum_probs=22.2
Q ss_pred CChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 131 DDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 131 pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.+...+-.+...+...|+.++|.++
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~ 285 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEI 285 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHH
Confidence 4888999999999999999999875
No 67
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.19 E-value=0.0068 Score=40.09 Aligned_cols=85 Identities=6% Similarity=-0.105 Sum_probs=65.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHH
Q 041561 60 MIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDL 139 (156)
Q Consensus 60 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~l 139 (156)
.-..+...|++++|.+.|+...... ..+...|..+-..+.+.|++++|...|+..... -..+...|..+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l----------~p~~~~a~~~l 98 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML----------DASHPEPVYQT 98 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----------CCCCcHHHHHH
Confidence 4456678899999999999887643 235667777778888899999999999988432 23477788888
Q ss_pred HHHHhhcCCHhHHhhh
Q 041561 140 VSSCQVHSNVRLAKKA 155 (156)
Q Consensus 140 i~~~~~~g~~~~a~~~ 155 (156)
=.++...|++++|.+.
T Consensus 99 g~~l~~~g~~~eAi~~ 114 (144)
T PRK15359 99 GVCLKMMGEPGLAREA 114 (144)
T ss_pred HHHHHHcCCHHHHHHH
Confidence 8888899999988753
No 68
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.16 E-value=0.01 Score=39.24 Aligned_cols=93 Identities=8% Similarity=-0.105 Sum_probs=75.0
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKH 87 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 87 (156)
+...-..+...|++++|...|....+. .|+.. ..|..+-.++...|++++|...|+...+-. ..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~-------------~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSW-------------RAHIALAGTWMMLKEYTTAINFYGHALMLD-AS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcH-------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CC
Confidence 445566778899999999999998764 34332 667788888999999999999999998743 34
Q ss_pred cHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 88 DGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
+..++..+-.++.+.|+.++|...|+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66677778888889999999999999883
No 69
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.14 E-value=0.023 Score=49.72 Aligned_cols=140 Identities=7% Similarity=-0.061 Sum_probs=89.6
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhh---ccchHHHHHHHHHcCCCHHHHHHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCN---CGVTWNEMIHGYAENEYVEQAISLYKDI 80 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m 80 (156)
|+..+..+...+.+.|+.++|.+.++.+.+.. |+...+..+-..+.. .+...-.+...+.+.|++++|.+.|+.+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44566777777788888888888888887754 443322221111111 1122344455788999999999999998
Q ss_pred HHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 81 IASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 81 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.+............+.......|+.++|.+.++.+...+ .-+...+..+-..+...|+.++|.+.
T Consensus 139 l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~----------P~~~~~~~~LA~ll~~~g~~~eAl~~ 203 (1157)
T PRK11447 139 FNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY----------PGNTGLRNTLALLLFSSGRRDEGFAV 203 (1157)
T ss_pred ccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC----------CCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 765322211111111222235689999999999995542 33566777888888899999988763
No 70
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.11 E-value=0.011 Score=36.88 Aligned_cols=93 Identities=10% Similarity=-0.056 Sum_probs=67.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCCh
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGV--KHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDL 133 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~ 133 (156)
++-.+...+.+.|++++|.+.|..+..... ......+..+-..+.+.|++++|.+.++....... ......
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-------~~~~~~ 76 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP-------KSPKAP 76 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC-------CCCccc
Confidence 345566778889999999999999986431 11234566688889999999999999999854321 001124
Q ss_pred hhHHHHHHHHhhcCCHhHHhhh
Q 041561 134 VVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 134 ~~~~~li~~~~~~g~~~~a~~~ 155 (156)
..+..+-..+...|+.++|.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~ 98 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKAT 98 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHH
Confidence 5677777888999999988763
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.03 E-value=0.04 Score=40.85 Aligned_cols=74 Identities=8% Similarity=-0.184 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHcC
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAEN 67 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~ 67 (156)
|...=..+.+.|+.++|...|+...+.. +.+...|+.+=..|.+.| ..|..+-.++...
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 145 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYG 145 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3334445667788888888888877643 224545555544444444 3444444455555
Q ss_pred CCHHHHHHHHHHHHH
Q 041561 68 EYVEQAISLYKDIIA 82 (156)
Q Consensus 68 g~~~~a~~~~~~m~~ 82 (156)
|++++|.+.|+...+
T Consensus 146 g~~~eA~~~~~~al~ 160 (296)
T PRK11189 146 GRYELAQDDLLAFYQ 160 (296)
T ss_pred CCHHHHHHHHHHHHH
Confidence 566666666555544
No 72
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.03 E-value=0.024 Score=46.94 Aligned_cols=122 Identities=9% Similarity=-0.027 Sum_probs=83.8
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASG 84 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 84 (156)
+..+-.|-....+.|..++|+.+++...+. .||.. ..+-.+...+.+.+++++|....++....
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~-------------~a~~~~a~~L~~~~~~eeA~~~~~~~l~~- 149 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSS-------------EAFILMLRGVKRQQGIEAGRAEIELYFSG- 149 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcH-------------HHHHHHHHHHHHhccHHHHHHHHHHHhhc-
Confidence 555666667777888899999999888774 56654 44555667777888888888888777653
Q ss_pred CCccHHHH-HHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-ChhhHHHHHHHHhhcCCHhHHhh
Q 041561 85 VKHDGVTF-VAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 85 ~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~~~~~g~~~~a~~ 154 (156)
.|+..+. ..+-.++.+.|+.++|..+|++.... .| +..+|.++=.++...|+.++|..
T Consensus 150 -~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~-----------~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 150 -GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ-----------HPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred -CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc-----------CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555443 33445555788888888888877432 23 36667777777777788777754
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.00 E-value=0.058 Score=40.56 Aligned_cols=131 Identities=13% Similarity=0.071 Sum_probs=87.2
Q ss_pred HhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhh----cc--------------------chHHHHHHHHHcCCC
Q 041561 14 SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCN----CG--------------------VTWNEMIHGYAENEY 69 (156)
Q Consensus 14 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~--------------------~~~~~li~~~~~~g~ 69 (156)
.+...|+.+.|.++++...+.. +.|...++. ...+.. .+ .....+-..+...|+
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence 3456789999999999887652 223333331 111111 11 222334457788999
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCCh--hhHHHHHHHHhhcC
Q 041561 70 VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDL--VVWGDLVSSCQVHS 147 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~--~~~~~li~~~~~~g 147 (156)
+++|.+.+++..+.. ..+...+..+-..+...|++++|...++....... ..|+. ..|-.+-..+...|
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~--------~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD--------CSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC--------CCcchhHHHHHHHHHHHHHCC
Confidence 999999999998753 22345667777888899999999999998743311 12333 34667888899999
Q ss_pred CHhHHhhh
Q 041561 148 NVRLAKKA 155 (156)
Q Consensus 148 ~~~~a~~~ 155 (156)
+.++|.++
T Consensus 201 ~~~~A~~~ 208 (355)
T cd05804 201 DYEAALAI 208 (355)
T ss_pred CHHHHHHH
Confidence 99999764
No 74
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.99 E-value=0.021 Score=44.58 Aligned_cols=112 Identities=13% Similarity=0.034 Sum_probs=88.4
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc-HHHHHH
Q 041561 16 AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD-GVTFVA 94 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ 94 (156)
-..|..++|+..+..+.+. .||-. ..+.....-+.+.++.++|.+.|+.+... .|+ ....-.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~-------------~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~ 379 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNP-------------YYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLN 379 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCH-------------HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHH
Confidence 3567889999999998664 35443 44455567788999999999999999874 555 445555
Q ss_pred HHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 95 ILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 95 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
+-+++.+.|+.++|..+++....+ .+-|...|..|=++|...|+..+|..
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~~----------~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLFN----------DPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhc----------CCCCchHHHHHHHHHHHhCchHHHHH
Confidence 678899999999999999988554 45688999999999999999988764
No 75
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.98 E-value=0.0026 Score=37.88 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHHCCC-CccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-ChhhHHHHHHHHh
Q 041561 67 NEYVEQAISLYKDIIASGV-KHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSSCQ 144 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~~~ 144 (156)
.|++++|..+|+++.+... .|+...+-.+-.++.+.|+.++|..+++.. .. .| +....-.+-.+|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~~-----------~~~~~~~~~l~a~~~~ 69 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-KL-----------DPSNPDIHYLLARCLL 69 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-TH-----------HHCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-CC-----------CCCCHHHHHHHHHHHH
Confidence 5789999999999988654 335555656889999999999999999983 22 22 2233334468899
Q ss_pred hcCCHhHHhhh
Q 041561 145 VHSNVRLAKKA 155 (156)
Q Consensus 145 ~~g~~~~a~~~ 155 (156)
..|++++|.++
T Consensus 70 ~l~~y~eAi~~ 80 (84)
T PF12895_consen 70 KLGKYEEAIKA 80 (84)
T ss_dssp HTT-HHHHHHH
T ss_pred HhCCHHHHHHH
Confidence 99999999864
No 76
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.95 E-value=0.0021 Score=38.25 Aligned_cols=80 Identities=8% Similarity=0.052 Sum_probs=56.4
Q ss_pred CCchHHHHHHHHHHHHhCC-CCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccH-HHHHHH
Q 041561 18 LSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDG-VTFVAI 95 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~l 95 (156)
.|+.+.|..+++.+.+..- .|+. ..|-.+-.+|.+.|++++|.++++. .+ ..|+. ...-.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~--------------~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~ 64 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNS--------------AYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLL 64 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHH--------------HHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhH--------------HHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHH
Confidence 5789999999999987543 2233 3344578899999999999999988 22 22222 222234
Q ss_pred HHhhcCCCchHHHHHHHHh
Q 041561 96 LTPCSHSGLVYAEVEIFNS 114 (156)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~ 114 (156)
-++|.+.|++++|..+++.
T Consensus 65 a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhc
Confidence 6777799999999999874
No 77
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.89 E-value=0.039 Score=38.55 Aligned_cols=100 Identities=4% Similarity=-0.036 Sum_probs=72.4
Q ss_pred CCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHH-HHcCCC--HHHHHHHHHH
Q 041561 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHG-YAENEY--VEQAISLYKD 79 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~-~~~~g~--~~~a~~~~~~ 79 (156)
.|...|..+-..+...|+.+.|...++...+..- -|. ..+..+-.+ +...|+ .++|.+++++
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~--------------~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENA--------------ELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCH--------------HHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3456677777778888888888888888776431 233 444555554 356666 5999999999
Q ss_pred HHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 80 IIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 80 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
..+.... +...+..+-..+.+.|++++|...++.+.+.
T Consensus 136 al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 136 ALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9886533 4556666777778999999999999999544
No 78
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.89 E-value=0.016 Score=37.34 Aligned_cols=86 Identities=9% Similarity=0.052 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHH
Q 041561 58 NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG 137 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~ 137 (156)
..+...+...|+.++|.+.|+.....+ ..+...+..+-..+.+.|+.++|...++..... ...+...|.
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------~p~~~~~~~ 89 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL----------DPDDPRPYF 89 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCChHHHH
Confidence 345566778899999999999987754 235667777888888999999999999987332 234567777
Q ss_pred HHHHHHhhcCCHhHHhh
Q 041561 138 DLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 138 ~li~~~~~~g~~~~a~~ 154 (156)
.+=..|...|+.++|.+
T Consensus 90 ~la~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 90 HAAECLLALGEPESALK 106 (135)
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 77788999999999865
No 79
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.89 E-value=0.014 Score=33.83 Aligned_cols=92 Identities=10% Similarity=0.084 Sum_probs=69.4
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKH 87 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 87 (156)
+..+...+.+.|++++|...++...+.. |+.. ..+..+-..+...+++++|.+.|+...... ..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~ 66 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNA-------------DAYYNLAAAYYKLGKYEEALEDYEKALELD-PD 66 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-Cc
Confidence 4556667778899999999999987653 3221 344556667777899999999999987654 22
Q ss_pred cHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 88 DGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
+..++..+...+...|+.++|...+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 67 NAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred chhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3357778888888999999999999876
No 80
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.87 E-value=0.049 Score=46.05 Aligned_cols=90 Identities=10% Similarity=0.020 Sum_probs=45.4
Q ss_pred HHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCC-----CC
Q 041561 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASG-----VK 86 (156)
Q Consensus 12 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~ 86 (156)
+-++...|+..++.+.++.|...|.+.-.++- -.+.++|...+++++|..+|++..... ..
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~--------------~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~ 364 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYAR--------------RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNS 364 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH--------------HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCC
Confidence 44556667777888888888777754222222 233444445555555555555543321 01
Q ss_pred ccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 87 HDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
++......|+.++...+++++|.++++.+
T Consensus 365 ~~~~~~~~L~yA~ld~e~~~~A~~~l~~~ 393 (822)
T PRK14574 365 DDLLDADDLYYSLNESEQLDKAYQFAVNY 393 (822)
T ss_pred cchHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 11222344455555555555555555555
No 81
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.84 E-value=0.024 Score=45.12 Aligned_cols=113 Identities=14% Similarity=0.206 Sum_probs=91.6
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCC-chHHHhHHHHHhhhcc--chHHH-----------------HHHHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG--VTWNE-----------------MIHGYA 65 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~--~~~~~-----------------li~~~~ 65 (156)
.+|...|+.--|..-++.|+.+|....+.+..+ .+++++++|..||... ..|+. -++-+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 467788888888888999999999999999888 9999999999999887 33333 444455
Q ss_pred cCCCHHHHHHHHHHHHHCCCCccH--HHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 66 ENEYVEQAISLYKDIIASGVKHDG--VTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 66 ~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
+.++-..+..+|+....+++.||. ..|..+|+--+.-|++..+..+-+++...
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 566667788999999888666665 58999999999999999998887766443
No 82
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.83 E-value=0.044 Score=43.00 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=78.4
Q ss_pred CCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 041561 36 YGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95 (156)
Q Consensus 36 ~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 95 (156)
++.|+.+.+-|-+.|-+.| ++-.=|-.-|....-.+++...|+.-.. +.|+..-|-.|
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHH
Confidence 4557888888888998888 2222344555566667889999887543 79999999999
Q ss_pred HHhhc-CCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHh
Q 041561 96 LTPCS-HSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVR 150 (156)
Q Consensus 96 l~~~~-~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~ 150 (156)
|..|. |.|++++|++++.+.-++ +.-|.....-|+..+.-.|..+
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk----------fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK----------FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh----------CccchHHHHHHHHHhccccchh
Confidence 98887 799999999999988544 4567788888888877776543
No 83
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.62 E-value=0.034 Score=36.51 Aligned_cols=100 Identities=12% Similarity=0.109 Sum_probs=72.4
Q ss_pred cCCCchHHHHHHHHHHHH--hC-CCCchH--HHhHHHHHhhhcc--chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc
Q 041561 16 AKLSSLFLGRQILTRIVK--DG-YGNDIF--VGSAPINIYCNCG--VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD 88 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~--~g-~~~~~~--~~~~li~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 88 (156)
...++.+.+...+..... .| +-|+.. -|..-...+.+.. .....++..+...|++++|.++.+.+.... ..|
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~ 95 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD-PYD 95 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCC
Confidence 456788888888888765 34 444432 3444444444333 667778888889999999999999998754 447
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 89 GVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
...|..+|.++.+.|+..+|.++|+.+.
T Consensus 96 E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 96 EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 8899999999999999999999998874
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.60 E-value=0.15 Score=40.90 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=17.4
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhC
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDG 35 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g 35 (156)
..-+.+.+.|+.++|+.++..+.+.+
T Consensus 43 ~rA~ll~kLg~~~eA~~~y~~Li~rN 68 (517)
T PF12569_consen 43 KRAELLLKLGRKEEAEKIYRELIDRN 68 (517)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 33455667777777777777777654
No 85
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.036 Score=41.51 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=78.5
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCccHHHH--HHH
Q 041561 19 SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTF--VAI 95 (156)
Q Consensus 19 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~--~~l 95 (156)
...++|..+|-+|.+ .|+.++.+ -=+|=+-|.+.|..|.|+++.+.+.++ +...+...+ -.+
T Consensus 49 ~Q~dKAvdlF~e~l~----~d~~t~e~-----------~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL 113 (389)
T COG2956 49 NQPDKAVDLFLEMLQ----EDPETFEA-----------HLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQL 113 (389)
T ss_pred cCcchHHHHHHHHHh----cCchhhHH-----------HHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 456888889988876 34433322 234556677899999999999998864 333333322 235
Q ss_pred HHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhhC
Q 041561 96 LTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKAA 156 (156)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~~ 156 (156)
-+-|..+|-+|.|+++|..+..+. .--....-.|+..|-...++++|..+|
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~----------efa~~AlqqLl~IYQ~treW~KAId~A 164 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG----------EFAEGALQQLLNIYQATREWEKAIDVA 164 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch----------hhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 566778999999999999985432 123455677888999999999888765
No 86
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.53 E-value=0.012 Score=33.07 Aligned_cols=56 Identities=5% Similarity=0.078 Sum_probs=45.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 61 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
-..+...|++++|.+.|++..+.... +...+..+-..+.+.|++++|...|+...+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678899999999999999987622 666777788888899999999999998843
No 87
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.52 E-value=0.1 Score=35.35 Aligned_cols=116 Identities=9% Similarity=-0.043 Sum_probs=77.0
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
.+..+-..+.+.|+.++|...|++..+....++.. ...|..+-..+.+.|++++|.+.+++.... .
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~ 102 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDR------------SYILYNMGIIYASNGEHDKALEYYHQALEL--N 102 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 45556667778899999999999987654322210 045677788889999999999999998764 3
Q ss_pred c-cHHHHHHHHHhhcCCCc--------------hHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCH
Q 041561 87 H-DGVTFVAILTPCSHSGL--------------VYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNV 149 (156)
Q Consensus 87 p-~~~t~~~ll~~~~~~~~--------------~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~ 149 (156)
| +...+..+-..+...|+ +++|.++++... ..+...|..++.-+...|+.
T Consensus 103 p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~-------------~~~p~~~~~~~~~~~~~~~~ 167 (172)
T PRK02603 103 PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI-------------RLAPNNYIEAQNWLKTTGRS 167 (172)
T ss_pred cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH-------------hhCchhHHHHHHHHHhcCcc
Confidence 3 34445555555655555 456666666652 23334477777777666654
No 88
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.49 E-value=0.26 Score=37.80 Aligned_cols=91 Identities=7% Similarity=0.042 Sum_probs=76.7
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccH-------HHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDG-------VTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLM 127 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~ 127 (156)
..-.....+|.+.|++.+..++...|.+.|+-.|+ .+|+.+++=+...++.+.-.+.++....+
T Consensus 188 ~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~--------- 258 (400)
T COG3071 188 EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK--------- 258 (400)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH---------
Confidence 56777888999999999999999999998875554 46888888888888888888888888655
Q ss_pred CCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 128 PYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 128 ~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.+-|+..-.+++.-+.+.|+.++|.++
T Consensus 259 -lr~~p~l~~~~a~~li~l~~~~~A~~~ 285 (400)
T COG3071 259 -LRNDPELVVAYAERLIRLGDHDEAQEI 285 (400)
T ss_pred -hhcChhHHHHHHHHHHHcCChHHHHHH
Confidence 577888889999999999999999876
No 89
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=0.078 Score=41.84 Aligned_cols=124 Identities=11% Similarity=0.098 Sum_probs=86.1
Q ss_pred CCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHcCCCHHHHHHHH
Q 041561 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAENEYVEQAISLY 77 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~g~~~~a~~~~ 77 (156)
.+++..|.++|+...... ..+...|--.+.+=-+.+ ..|---+-.=-..|.+..|.++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 456677888888776533 244445544444433333 22322333333466777788888
Q ss_pred HHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 78 KDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 78 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
+.-. ...|+...|.+.|+.-.+-..++.|+.+++.+.. +.|++.+|--...=--++|.+..|+.|
T Consensus 165 erW~--~w~P~eqaW~sfI~fElRykeieraR~IYerfV~-----------~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 165 ERWM--EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL-----------VHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHH--cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----------ecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 7643 3789999999999999999999999999998843 579999998888888888888877764
No 90
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.41 E-value=0.041 Score=41.38 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=70.9
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
+.+..|.-|...|....|.++-.+.. + ||. .-|...|.+++..+++++..++... +
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dk--------------rfw~lki~aLa~~~~w~eL~~fa~s------k 234 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDK--------------RFWWLKIKALAENKDWDELEKFAKS------K 234 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHH--------------HHHHHHHHHHHhcCCHHHHHHHHhC------C
Confidence 34445555666666666655544432 2 555 6677888888888888886665432 2
Q ss_pred ccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhhC
Q 041561 87 HDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKAA 156 (156)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~~ 156 (156)
-.+.-|-.++++|.+.|+.++|..+...+.. ..=+..|.+.|++.+|-+.|
T Consensus 235 KsPIGyepFv~~~~~~~~~~eA~~yI~k~~~-------------------~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 235 KSPIGYEPFVEACLKYGNKKEASKYIPKIPD-------------------EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCCChHHHHHHHHHCCCHHHHHHHHHhCCh-------------------HHHHHHHHHCCCHHHHHHHH
Confidence 2346777888888888888888877776521 33567788888888887654
No 91
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.41 E-value=0.071 Score=35.94 Aligned_cols=89 Identities=9% Similarity=0.045 Sum_probs=65.6
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc--cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH--DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD 132 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd 132 (156)
..|..+...+...|++++|...|++.......| ...++..+-..+.+.|+.++|...++..... .+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~----------~~~~ 105 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER----------NPFL 105 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CcCc
Confidence 566777788888999999999999987643233 2347788888888999999999999887432 1223
Q ss_pred hhhHHHHHHHHh-------hcCCHhHHh
Q 041561 133 LVVWGDLVSSCQ-------VHSNVRLAK 153 (156)
Q Consensus 133 ~~~~~~li~~~~-------~~g~~~~a~ 153 (156)
..+++.+-..+. ..|++++|.
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~ 133 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAE 133 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHH
Confidence 455677767777 777777554
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.41 E-value=0.2 Score=35.48 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHHCCCCccHH-HH-----------------HHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCC
Q 041561 68 EYVEQAISLYKDIIASGVKHDGV-TF-----------------VAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPY 129 (156)
Q Consensus 68 g~~~~a~~~~~~m~~~g~~p~~~-t~-----------------~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~ 129 (156)
|+.++|.+.|+...... |+.. .+ ..+-+.+.+.|+.++|...+......+. -
T Consensus 129 ~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--------~ 198 (235)
T TIGR03302 129 TAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYP--------D 198 (235)
T ss_pred HHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC--------C
Confidence 66788888888887642 2221 11 1234556678999999999998855421 1
Q ss_pred CC-ChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 130 KD-DLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 130 ~p-d~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.| ....|..+..++...|+.++|...
T Consensus 199 ~~~~~~a~~~l~~~~~~lg~~~~A~~~ 225 (235)
T TIGR03302 199 TPATEEALARLVEAYLKLGLKDLAQDA 225 (235)
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22 357889999999999999999763
No 93
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.37 E-value=0.05 Score=35.82 Aligned_cols=88 Identities=6% Similarity=0.015 Sum_probs=64.7
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHH
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF 92 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 92 (156)
..+...|++++|...|+...... ||..... ...-.|-..+...|++++|+..++....... ....+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~----------~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~ 121 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANA--PDPELKP----------LARLRLARILLQQGQYDEALATLQQIPDEAF--KALAA 121 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--CCHHHHH----------HHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHH
Confidence 56678899999999999998876 4432211 1233467788899999999999977443333 33455
Q ss_pred HHHHHhhcCCCchHHHHHHHHh
Q 041561 93 VAILTPCSHSGLVYAEVEIFNS 114 (156)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~ 114 (156)
...=+.+.+.|+.++|+..|+.
T Consensus 122 ~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 122 ELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHH
Confidence 5666888899999999999874
No 94
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.36 E-value=0.072 Score=34.21 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=61.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCccH--HHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHH
Q 041561 61 IHGYAENEYVEQAISLYKDIIASGVKHDG--VTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGD 138 (156)
Q Consensus 61 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~ 138 (156)
-.++-..|+.++|..+|++-...|..... ..+-.+-..+...|++++|..+++....++. +.++ +......
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p-----~~~~--~~~l~~f 80 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFP-----DDEL--NAALRVF 80 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----Cccc--cHHHHHH
Confidence 34667889999999999999998876653 3455566778889999999999998855421 0001 1222222
Q ss_pred HHHHHhhcCCHhHHhhh
Q 041561 139 LVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 139 li~~~~~~g~~~~a~~~ 155 (156)
+-.++...|+.++|.+.
T Consensus 81 ~Al~L~~~gr~~eAl~~ 97 (120)
T PF12688_consen 81 LALALYNLGRPKEALEW 97 (120)
T ss_pred HHHHHHHCCCHHHHHHH
Confidence 33477788999998764
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.36 E-value=0.2 Score=35.00 Aligned_cols=89 Identities=12% Similarity=0.112 Sum_probs=69.3
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhh-cCCCc--hHHHHHHHHhcccccccCCCcCCCCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC-SHSGL--VYAEVEIFNSMEHDHEVKPKCLMPYKD 131 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~--~~~a~~~~~~m~~~~~~~~~c~~~~~p 131 (156)
..|..+-..|...|++++|.+.|++..+-.. -|...+..+-.++ .+.|+ .++|.+++++..+. -.-
T Consensus 74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~----------dP~ 142 (198)
T PRK10370 74 EQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALAL----------DAN 142 (198)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----------CCC
Confidence 7899999999999999999999999877432 2444555555554 56676 59999999999544 133
Q ss_pred ChhhHHHHHHHHhhcCCHhHHhh
Q 041561 132 DLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 132 d~~~~~~li~~~~~~g~~~~a~~ 154 (156)
+...+..+=..+...|++++|..
T Consensus 143 ~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 143 EVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred ChhHHHHHHHHHHHcCCHHHHHH
Confidence 66788888889999999999975
No 96
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.098 Score=41.05 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=90.7
Q ss_pred CCCchHHHHHHHHHHHHhC-C-CCchHHHhHHHHHhhhcc-----------------chHHHHHHHHHcCCCHHHHHHHH
Q 041561 17 KLSSLFLGRQILTRIVKDG-Y-GNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAENEYVEQAISLY 77 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g-~-~~~~~~~~~li~~~~~~~-----------------~~~~~li~~~~~~g~~~~a~~~~ 77 (156)
...|+++|+.+|+++.+.. . .-|..+|+.++-.--... +|...+-+-|+-.++.++|...|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 5579999999999998764 2 347788887764433322 77788888888899999999999
Q ss_pred HHHHHCCCCcc-HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC--------------------c------CCCCC
Q 041561 78 KDIIASGVKHD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK--------------------C------LMPYK 130 (156)
Q Consensus 78 ~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------------------c------~~~~~ 130 (156)
+.-.+- .|. ...|+.|=.-|...++-..|.+-++.-.+ +-|. | ...++
T Consensus 354 kRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k 428 (559)
T KOG1155|consen 354 KRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK 428 (559)
T ss_pred HHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence 987653 333 23455555555556666555555544311 1111 0 22244
Q ss_pred C-ChhhHHHHHHHHhhcCCHhHHhh
Q 041561 131 D-DLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 131 p-d~~~~~~li~~~~~~g~~~~a~~ 154 (156)
| |.+.|.+|=+.|.+.++.++|.+
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHH
Confidence 4 88999999999999999999875
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.34 E-value=0.21 Score=36.18 Aligned_cols=90 Identities=9% Similarity=-0.000 Sum_probs=74.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..-+.......+.|++.+|...|++...- -.+|..+|+.+=-+|.+.|+.++|+.-|.+-.+- ..-+..
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L----------~~~~p~ 169 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALEL----------APNEPS 169 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh----------ccCCch
Confidence 44555788889999999999999998653 3678889999999999999999999999888433 123667
Q ss_pred hHHHHHHHHhhcCCHhHHhhh
Q 041561 135 VWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~ 155 (156)
..|-|--.|.-.|+.+.|+.+
T Consensus 170 ~~nNlgms~~L~gd~~~A~~l 190 (257)
T COG5010 170 IANNLGMSLLLRGDLEDAETL 190 (257)
T ss_pred hhhhHHHHHHHcCCHHHHHHH
Confidence 788888889999999999864
No 98
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.31 E-value=0.34 Score=39.89 Aligned_cols=136 Identities=10% Similarity=0.073 Sum_probs=98.5
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHc
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAE 66 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~ 66 (156)
||..--+.|.+.+.++-|..+|....+. ++-+...|......=-..| ..|-...+.+..
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 4555556666777777777777776653 2334445554443322223 567777777888
Q ss_pred CCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhc
Q 041561 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVH 146 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~ 146 (156)
.|++.+|..++.+..+...+ +...|-+-++-...+..++.|+.+|.+-.. ..|..+.|.--++--...
T Consensus 597 agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~-----------~sgTeRv~mKs~~~er~l 664 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS-----------ISGTERVWMKSANLERYL 664 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc-----------cCCcchhhHHHhHHHHHh
Confidence 89999999999888775544 677888899999999999999999997743 357888888888888888
Q ss_pred CCHhHHhhh
Q 041561 147 SNVRLAKKA 155 (156)
Q Consensus 147 g~~~~a~~~ 155 (156)
|+.++|.++
T Consensus 665 d~~eeA~rl 673 (913)
T KOG0495|consen 665 DNVEEALRL 673 (913)
T ss_pred hhHHHHHHH
Confidence 888888775
No 99
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.27 E-value=0.19 Score=37.25 Aligned_cols=140 Identities=6% Similarity=-0.071 Sum_probs=83.7
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCC-chHHHhHHHHHhhhcc------------------chH-HHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG------------------VTW-NEMIHG 63 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~------------------~~~-~~li~~ 63 (156)
+...|+.+=..+...|+.++|...|+...+. .| +...|..+-..+...| ..+ ......
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l 174 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYL 174 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3467888888889999999999999998764 34 3456666655565555 111 111122
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-ChhhHHHHHHH
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSS 142 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~ 142 (156)
....+++++|.+.|.+.... ..|+...+ .+... ..|+++.+ +.+..+.+.... ...+.| ....|.-+=..
T Consensus 175 ~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~----~~~l~~~~~ea~~~Lg~~ 245 (296)
T PRK11189 175 AESKLDPKQAKENLKQRYEK-LDKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATD----NTELAERLCETYFYLAKY 245 (296)
T ss_pred HHccCCHHHHHHHHHHHHhh-CCccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCC----cHHHHHHHHHHHHHHHHH
Confidence 34567899999999775533 23333322 23322 34555443 344444322110 000111 33578888899
Q ss_pred HhhcCCHhHHhh
Q 041561 143 CQVHSNVRLAKK 154 (156)
Q Consensus 143 ~~~~g~~~~a~~ 154 (156)
+...|+.++|..
T Consensus 246 ~~~~g~~~~A~~ 257 (296)
T PRK11189 246 YLSLGDLDEAAA 257 (296)
T ss_pred HHHCCCHHHHHH
Confidence 999999999976
No 100
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.23 E-value=0.028 Score=41.41 Aligned_cols=89 Identities=12% Similarity=0.114 Sum_probs=69.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
.|-.+|+..-+.+.++.|.++|.+-++.+ ...+.+...+++.-+ ..++.+.|..||+...+. +..+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~----------f~~~~~ 71 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK----------FPSDPD 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH----------HTT-HH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH----------CCCCHH
Confidence 57788888889889999999999998653 566777777777654 357788899999999776 356888
Q ss_pred hHHHHHHHHhhcCCHhHHhhh
Q 041561 135 VWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~ 155 (156)
.|...|.-....|+.+.|+.+
T Consensus 72 ~~~~Y~~~l~~~~d~~~aR~l 92 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDINNARAL 92 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHH
Confidence 999999999999999998864
No 101
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.19 E-value=0.057 Score=43.70 Aligned_cols=137 Identities=10% Similarity=0.010 Sum_probs=82.5
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCC-chHHHhHHHH----------------------------------
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPIN---------------------------------- 48 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~---------------------------------- 48 (156)
.+.||.++=..|+-.++.+.|.+-|+...+. .| ..++|+.+=+
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~ 497 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGT 497 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhh
Confidence 4578888888888888888888888887663 23 3344432211
Q ss_pred Hhhhcc--------------------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHH
Q 041561 49 IYCNCG--------------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108 (156)
Q Consensus 49 ~~~~~~--------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 108 (156)
.|.|.+ +.-..+...+-+.|+-|+|+++|++-..-..+ |...---....+--.++.++|
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~ea 576 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEA 576 (638)
T ss_pred heeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHH
Confidence 111111 22333444555667777777777776543322 111111222333456778888
Q ss_pred HHHHHhcccccccCCCcCCCCCCChh-hHHHHHHHHhhcCCHhHHhh
Q 041561 109 VEIFNSMEHDHEVKPKCLMPYKDDLV-VWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 109 ~~~~~~m~~~~~~~~~c~~~~~pd~~-~~~~li~~~~~~g~~~~a~~ 154 (156)
.+.++++ ++ +.||.. .|-.+-..|.+.|+.+.|..
T Consensus 577 l~~LEeL-k~----------~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 577 LQELEEL-KE----------LVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHHHHHH-HH----------hCcchHHHHHHHHHHHHHHccchHHHH
Confidence 8888888 44 567664 46666799999999888863
No 102
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.17 E-value=0.19 Score=32.79 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=80.7
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------chHHHHHHHHHcCCCHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------VTWNEMIHGYAENEYVE 71 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------~~~~~li~~~~~~g~~~ 71 (156)
.....++..+.+.+....+...++.+...+ ..+...+|.+|..|++.. .....+++.|-+.+.++
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCHHHHHHHHHhccccCCHHHHHHHHHHcCcHH
Confidence 445678888888899999999999998877 378889999999999876 22344777777777777
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhh
Q 041561 72 QAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV 145 (156)
Q Consensus 72 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~ 145 (156)
++..++..+.. .......+++. .++.+.|.+.+..- -|...|..++..+..
T Consensus 87 ~~~~l~~k~~~-----~~~Al~~~l~~---~~d~~~a~~~~~~~---------------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 87 EAVELYKKDGN-----FKDAIVTLIEH---LGNYEKAIEYFVKQ---------------NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHhhcC-----HHHHHHHHHHc---ccCHHHHHHHHHhC---------------CCHHHHHHHHHHHHc
Confidence 77777766532 12233333332 27777777777643 255678888776653
No 103
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.15 E-value=0.13 Score=39.30 Aligned_cols=87 Identities=7% Similarity=-0.015 Sum_probs=68.7
Q ss_pred HhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHH
Q 041561 14 SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFV 93 (156)
Q Consensus 14 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 93 (156)
.+...|+++.|...+++..+.. |+.. ..|..+-.+|.+.|++++|...+++..+... .+...|.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~--P~~~-------------~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~ 74 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD--PNNA-------------ELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYL 74 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHH
Confidence 4457799999999999998743 4322 4566677788899999999999999987432 2455777
Q ss_pred HHHHhhcCCCchHHHHHHHHhcc
Q 041561 94 AILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
.+-.+|.+.|++++|...|+...
T Consensus 75 ~lg~~~~~lg~~~eA~~~~~~al 97 (356)
T PLN03088 75 RKGTACMKLEEYQTAKAALEKGA 97 (356)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 77888889999999999999884
No 104
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.06 E-value=0.053 Score=35.61 Aligned_cols=71 Identities=11% Similarity=0.119 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH-----
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA----- 82 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----- 82 (156)
...+...+...|+.+.|..+...+.... +-|. ..|-.+|.+|...|+..+|.++|+.+..
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E--------------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~e 129 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDE--------------EAYRLLMRALAAQGRRAEALRVYERYRRRLREE 129 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-H--------------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCH--------------HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3445566667888888888888886642 1233 6788899999999999999999999853
Q ss_pred CCCCccHHHHH
Q 041561 83 SGVKHDGVTFV 93 (156)
Q Consensus 83 ~g~~p~~~t~~ 93 (156)
-|+.|+..|-.
T Consensus 130 lg~~Ps~~~~~ 140 (146)
T PF03704_consen 130 LGIEPSPETRA 140 (146)
T ss_dssp HS----HHHHH
T ss_pred hCcCcCHHHHH
Confidence 39999887643
No 105
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.00 E-value=0.21 Score=32.03 Aligned_cols=105 Identities=10% Similarity=0.038 Sum_probs=72.8
Q ss_pred HhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc---HH
Q 041561 14 SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD---GV 90 (156)
Q Consensus 14 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~ 90 (156)
++-..|+.++|..+++.....|...+.. -.. +=.+-..+...|++++|..+|++....- |+ ..
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~-~~a-----------~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~ 75 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADR-RRA-----------LIQLASTLRNLGRYDEALALLEEALEEF--PDDELNA 75 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHH-HHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccH
Confidence 4456799999999999999988755432 122 2346677889999999999999987642 33 11
Q ss_pred HHH-HHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhh
Q 041561 91 TFV-AILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV 145 (156)
Q Consensus 91 t~~-~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~ 145 (156)
... .+--++...|+.++|...+-.. +.++..-|.--|..|+.
T Consensus 76 ~l~~f~Al~L~~~gr~~eAl~~~l~~-------------la~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 76 ALRVFLALALYNLGRPKEALEWLLEA-------------LAETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHh
Confidence 111 1223666889999999888765 24455577777777654
No 106
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=0.1 Score=38.17 Aligned_cols=48 Identities=6% Similarity=0.071 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 68 EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 68 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
+.+.+|+-+|++|-++ ..|+..+.|...-++...+++++|..+++...
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456666666666432 45556666666666666666666666666553
No 107
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.89 E-value=0.4 Score=38.59 Aligned_cols=125 Identities=9% Similarity=0.075 Sum_probs=92.5
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
++.-+-..|-..|+.++|....+...++- |+.. ..|..--+.+-+.|++++|.+.++.-+.-. .
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~-------------ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~ 259 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLV-------------ELYMTKARILKHAGDLKEAAEAMDEARELD-L 259 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcH-------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-h
Confidence 45666777889999999999999988763 5432 566777788889999999999999988755 4
Q ss_pred ccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh----hH--HHHHHHHhhcCCHhHHhh
Q 041561 87 HDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV----VW--GDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~----~~--~~li~~~~~~g~~~~a~~ 154 (156)
-|.+.-+-....+.|+|++++|.+++..+-++ +..+ .-|.. .| .--=.+|.+.|++..|.+
T Consensus 260 ~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~------~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 260 ADRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDP------LSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCc------ccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 47888888999999999999999999999433 2111 11221 11 222367888888887764
No 108
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.88 E-value=0.04 Score=31.01 Aligned_cols=63 Identities=10% Similarity=0.125 Sum_probs=46.2
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 041561 16 AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 95 (156)
.+.|++++|.++|+.+.+..-. |. ..+-.+..+|.+.|++++|.++++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~--------------~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NP--------------EARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SH--------------HHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 3578999999999999775321 33 45566889999999999999999998874 4554444433
No 109
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.87 E-value=0.14 Score=34.62 Aligned_cols=84 Identities=5% Similarity=0.008 Sum_probs=62.7
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc--HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD--GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD- 131 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p- 131 (156)
..|..+-..+...|++++|.+.|++.......++ ...+..+-..+.+.|+.++|...+...... .|
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------~p~ 104 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-----------NPK 104 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------Ccc
Confidence 4566677788889999999999999876543332 357778888888999999999999987432 33
Q ss_pred ChhhHHHHHHHHhhcCCH
Q 041561 132 DLVVWGDLVSSCQVHSNV 149 (156)
Q Consensus 132 d~~~~~~li~~~~~~g~~ 149 (156)
+...+..+-..|...|+.
T Consensus 105 ~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 105 QPSALNNIAVIYHKRGEK 122 (172)
T ss_pred cHHHHHHHHHHHHHcCCh
Confidence 455566666677776663
No 110
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.84 E-value=0.1 Score=39.82 Aligned_cols=83 Identities=13% Similarity=0.029 Sum_probs=65.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHH
Q 041561 62 HGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141 (156)
Q Consensus 62 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~ 141 (156)
......|++++|.+.|++..+... -+...|..+-.++.+.|++++|...++..... -..+...|..+-.
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l----------~P~~~~a~~~lg~ 78 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL----------DPSLAKAYLRKGT 78 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CcCCHHHHHHHHH
Confidence 345578999999999999987542 24556777778888999999999999988432 1236678888889
Q ss_pred HHhhcCCHhHHhhh
Q 041561 142 SCQVHSNVRLAKKA 155 (156)
Q Consensus 142 ~~~~~g~~~~a~~~ 155 (156)
+|...|++++|.+.
T Consensus 79 ~~~~lg~~~eA~~~ 92 (356)
T PLN03088 79 ACMKLEEYQTAKAA 92 (356)
T ss_pred HHHHhCCHHHHHHH
Confidence 99999999999763
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.82 E-value=0.32 Score=43.05 Aligned_cols=138 Identities=9% Similarity=0.023 Sum_probs=87.5
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHH-hCCCCchHHHhHHHHHhhhcc----------------------chHHHHHHH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCG----------------------VTWNEMIHG 63 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~~----------------------~~~~~li~~ 63 (156)
.|..|..-|.+....++|.++++.|.+ .| -....|....+.+.+.. ..-.-.+..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 456677777777778888888888754 44 44556666666665554 111222333
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHH
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~ 143 (156)
-.++|+.+++..+|+.....-.+ -.-.|+.+|++-.+.|+.+.++.+|++... .++ +.+-=...|.-++..-
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~-l~l------~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIE-LKL------SIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHh-cCC------ChhHhHHHHHHHHHHH
Confidence 34577777777777777654322 244688888888888888888888888833 221 1122346677777777
Q ss_pred hhcCCHhHHhh
Q 041561 144 QVHSNVRLAKK 154 (156)
Q Consensus 144 ~~~g~~~~a~~ 154 (156)
-.+|+-+.++.
T Consensus 1682 k~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1682 KSHGDEKNVEY 1692 (1710)
T ss_pred HhcCchhhHHH
Confidence 77777655543
No 112
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.81 E-value=0.33 Score=32.64 Aligned_cols=93 Identities=9% Similarity=-0.082 Sum_probs=61.4
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
.|..+...+...|++++|...|.......-.|... . .+|..+-..+...|++++|.+.++...... .
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~-----~-------~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~ 103 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR-----S-------YILYNIGLIHTSNGEHTKALEYYFQALERN-P 103 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh-----H-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 44556666777899999999999887653222110 0 356777788899999999999999987642 1
Q ss_pred ccHHHHHHHHHhhc-------CCCchHHHHHHH
Q 041561 87 HDGVTFVAILTPCS-------HSGLVYAEVEIF 112 (156)
Q Consensus 87 p~~~t~~~ll~~~~-------~~~~~~~a~~~~ 112 (156)
....++..+...+. ..|+.+.|...+
T Consensus 104 ~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 104 FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 12334555555555 677776554444
No 113
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.80 E-value=0.11 Score=40.32 Aligned_cols=86 Identities=10% Similarity=0.057 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhH
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVW 136 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~ 136 (156)
-.+|+..+...+++++|.++|+++.+.. |+.. ..+.+.+...++-.+|.+++.+...+ .+-|....
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~----------~p~d~~LL 237 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKE----------NPQDSELL 237 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh----------CCCCHHHH
Confidence 3567888888999999999999999876 5543 34677777778888888888887544 23366666
Q ss_pred HHHHHHHhhcCCHhHHhhhC
Q 041561 137 GDLVSSCQVHSNVRLAKKAA 156 (156)
Q Consensus 137 ~~li~~~~~~g~~~~a~~~~ 156 (156)
+.-..-+...++.+.|.++|
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHH
Confidence 66667789999999999875
No 114
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.70 E-value=0.04 Score=31.99 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=48.4
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHC----C-CCcc-HHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIAS----G-VKHD-GVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
.+|+.+-..|...|++++|++.|++..+- | -.|+ ..++..+-..+.+.|+.++|.+.+++-
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46788889999999999999999997642 2 2243 557788888899999999999998864
No 115
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.70 E-value=0.061 Score=30.03 Aligned_cols=55 Identities=9% Similarity=0.091 Sum_probs=44.8
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
..+.+.|++++|...|+...+.. |+.. ..|..+-.++...|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~-------------~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNP-------------EAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHH-------------HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678899999999999998865 4332 6677778888999999999999999875
No 116
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.61 E-value=0.14 Score=40.32 Aligned_cols=118 Identities=13% Similarity=0.192 Sum_probs=71.1
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhC-CCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
+.+|...|...-|..-++.|+.+|-.+.+.| +.+++++++++|..|+... +.-|.++|+.=..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d---------------~~ta~~ifelGl~- 460 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGD---------------RATAYNIFELGLL- 460 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCC---------------cchHHHHHHHHHH-
Confidence 3567888888888888999999999999999 6899988888877666544 3444444433111
Q ss_pred CCCccHHHH-HHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCC--hhhHHHHHHHHhhcCCH
Q 041561 84 GVKHDGVTF-VAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD--LVVWGDLVSSCQVHSNV 149 (156)
Q Consensus 84 g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd--~~~~~~li~~~~~~g~~ 149 (156)
..||...| +-.+.-+.+.++-+.|+.+|+.-..+ +..+ ...|..||.--...|+.
T Consensus 461 -~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r----------~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 461 -KFPDSTLYKEKYLLFLIRINDEENARALFETSVER----------LEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred -hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH----------HHHhhhhHHHHHHHHHHHhhcch
Confidence 12232222 23444455555666666666533222 1222 34555555555555555
No 117
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.56 E-value=0.25 Score=38.94 Aligned_cols=134 Identities=11% Similarity=0.024 Sum_probs=76.0
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-------------------chHHHHHHHHHcCCCHHHHHHHH
Q 041561 17 KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------------VTWNEMIHGYAENEYVEQAISLY 77 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-------------------~~~~~li~~~~~~g~~~~a~~~~ 77 (156)
.+|++++|...+.+.....-.-....||+=+.+=.... ...-.+.+-|-...++.+|.+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 35777777777777665433333333443332222222 22223444555556666777666
Q ss_pred HHHHHCCCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCC-C---------------c----------CCCCC
Q 041561 78 KDIIASGVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP-K---------------C----------LMPYK 130 (156)
Q Consensus 78 ~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~---------------c----------~~~~~ 130 (156)
.+ ...+.| |......+-+.|-+.|+-.+|++.+=.- +..-| + . ..-+.
T Consensus 582 ~q--~~slip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 582 MQ--ANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HH--hcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 43 334444 3445666667777777777777654321 11111 1 0 22268
Q ss_pred CChhhHHHHH-HHHhhcCCHhHHhhh
Q 041561 131 DDLVVWGDLV-SSCQVHSNVRLAKKA 155 (156)
Q Consensus 131 pd~~~~~~li-~~~~~~g~~~~a~~~ 155 (156)
|+..-|..|| +++.+.|++++|..+
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999999 456789999999763
No 118
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.55 E-value=0.11 Score=43.29 Aligned_cols=25 Identities=12% Similarity=0.072 Sum_probs=17.8
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHhC
Q 041561 11 VLSSCAKLSSLFLGRQILTRIVKDG 35 (156)
Q Consensus 11 ll~~~~~~~~~~~a~~~~~~m~~~g 35 (156)
.+.+..+.+.+.+|..+++.+....
T Consensus 738 aieaai~akew~kai~ildniqdqk 762 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK 762 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc
Confidence 3455567778888888888876643
No 119
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.52 E-value=0.16 Score=37.66 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=66.7
Q ss_pred chHHHHHHHHHc-----CCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCC----------------chHHHHHHHH
Q 041561 55 VTWNEMIHGYAE-----NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG----------------LVYAEVEIFN 113 (156)
Q Consensus 55 ~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------------~~~~a~~~~~ 113 (156)
-+|-+.+.-|.. .+.++-..--++.|++-|++-|..+|+.||+.+=+.. +-.=+..+++
T Consensus 68 ~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLe 147 (406)
T KOG3941|consen 68 DSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLE 147 (406)
T ss_pred HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHH
Confidence 344455555544 3567777788888999999999999999998876644 2233667899
Q ss_pred hcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHh
Q 041561 114 SMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVR 150 (156)
Q Consensus 114 ~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~ 150 (156)
+| +.+| +-||-.+=-.||++|.+.+.+-
T Consensus 148 qM-E~hG--------VmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 148 QM-EWHG--------VMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HH-HHcC--------CCCchHHHHHHHHHhccccccH
Confidence 99 7887 6899999999999999988654
No 120
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.47 E-value=0.55 Score=37.68 Aligned_cols=147 Identities=9% Similarity=0.014 Sum_probs=89.2
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHh-----CC-CCchHHHhH-HHHHhhhcc------------------------
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKD-----GY-GNDIFVGSA-PINIYCNCG------------------------ 54 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~-~~~~~~~~~-li~~~~~~~------------------------ 54 (156)
.|...+-..|...|+++.|+.++.+..+. |. .|.+.+..- +=..|..-+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555778889999999999999987543 31 222221111 222222222
Q ss_pred ----chHHHHHHHHHcCCCHHHHHHHHHHHHH---C--C-CCccHHH-HHHHHHhhcCCCchHHHHHHHHhcccccccCC
Q 041561 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIA---S--G-VKHDGVT-FVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP 123 (156)
Q Consensus 55 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~---~--g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 123 (156)
.+++.|-..|.+.|++++|...+++-.+ + | ..|...+ ++.+...|...+++++|..++..-.+.+.-.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 6677777788888888777766665431 1 2 2333332 44555666678888888877665433221000
Q ss_pred CcCCCCC-CChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 124 KCLMPYK-DDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 124 ~c~~~~~-pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
. .-. --..+++.|=..|-..|++++|+++
T Consensus 360 --g-~~~~~~a~~~~nl~~l~~~~gk~~ea~~~ 389 (508)
T KOG1840|consen 360 --G-EDNVNLAKIYANLAELYLKMGKYKEAEEL 389 (508)
T ss_pred --c-ccchHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 0 011 1247799999999999999999875
No 121
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.46 E-value=0.25 Score=37.41 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=88.7
Q ss_pred CCCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHH
Q 041561 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMI 61 (156)
Q Consensus 2 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li 61 (156)
+|.+.||-.+-++|-+...++.|+.++.+-.+. ++-|+..-.-+-+.+-.-+ +.-..+-
T Consensus 253 ~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia 331 (478)
T KOG1129|consen 253 FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIA 331 (478)
T ss_pred CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeee
Confidence 366677777777777777777777777765443 2223322222222221111 3334455
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccc---cccCCC--------------
Q 041561 62 HGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD---HEVKPK-------------- 124 (156)
Q Consensus 62 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~-------------- 124 (156)
.+|.-.++++.|++.|+++.+.|+. +...|+.+--.|.-.+++|.+.--|+.-..- .|...+
T Consensus 332 ~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 332 VGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred eccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence 5667788899999999999988865 4455555555566677777666555543211 111111
Q ss_pred ------c----CCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 125 ------C----LMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 125 ------c----~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
| ...-.-....+|-|----.+.|++++|+-
T Consensus 411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 411 FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence 2 22223355677777777788999998874
No 122
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.42 E-value=0.31 Score=35.72 Aligned_cols=94 Identities=12% Similarity=0.008 Sum_probs=65.8
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc--HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD--GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD 132 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd 132 (156)
..|+..+.-+.+.|++++|...|+.+.+.-.... ...+-.+-..+...|+.++|...|..+...+.- .+..|
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~-----s~~~~- 217 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK-----SPKAA- 217 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----Ccchh-
Confidence 5677777766778999999999999987532211 235566778888999999999999999665421 11222
Q ss_pred hhhHHHHHHHHhhcCCHhHHhhh
Q 041561 133 LVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
..+-.+...+...|+.++|.++
T Consensus 218 -dAl~klg~~~~~~g~~~~A~~~ 239 (263)
T PRK10803 218 -DAMFKVGVIMQDKGDTAKAKAV 239 (263)
T ss_pred -HHHHHHHHHHHHcCCHHHHHHH
Confidence 2333345567788999998764
No 123
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.41 E-value=0.2 Score=39.70 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=74.6
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 041561 17 KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 96 (156)
..|++.+|.++|+.-.+ +.||. -.|++.|+-=.+-..++.|..+++..+. ++|+..+|--..
T Consensus 153 ~LgNi~gaRqiferW~~--w~P~e--------------qaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikya 214 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWME--WEPDE--------------QAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYA 214 (677)
T ss_pred HhcccHHHHHHHHHHHc--CCCcH--------------HHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHH
Confidence 34777888888876554 46888 5566666666777889999999999886 679999999888
Q ss_pred HhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhh
Q 041561 97 TPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV 145 (156)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~ 145 (156)
+--.+.|+...++.++..-....| |...-..++.+|+.
T Consensus 215 rFE~k~g~~~~aR~VyerAie~~~-----------~d~~~e~lfvaFA~ 252 (677)
T KOG1915|consen 215 RFEEKHGNVALARSVYERAIEFLG-----------DDEEAEILFVAFAE 252 (677)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHH
Confidence 888899999999999988754432 44444555555554
No 124
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.39 E-value=0.073 Score=30.86 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=49.3
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhC--CCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDG--YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDII 81 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 81 (156)
.+|+.+=..+.+.|+.++|...|++..+.. ..++. ..++ .+++.+-..|...|++++|.+.|++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~a-------~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDH---PDTA-------NTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHH---HHHH-------HHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCC---HHHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467777888889999999999999986541 22221 1112 678889999999999999999998753
No 125
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.29 E-value=0.3 Score=36.72 Aligned_cols=88 Identities=8% Similarity=-0.037 Sum_probs=61.1
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CccHH-
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV-KHDGV- 90 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~- 90 (156)
..+...|++++|...++...+.. |+.. ..+..+-..|...|++++|.+.+++...... .|+..
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~--p~~~-------------~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~ 186 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELN--PDDA-------------WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRG 186 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--CCCc-------------HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhH
Confidence 45566777777777777776643 3321 4556667788889999999999988765422 23332
Q ss_pred -HHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 91 -TFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 91 -t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
.|..+-..+...|+.++|..+++..
T Consensus 187 ~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 187 HNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445667778899999999999886
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.23 E-value=0.35 Score=40.34 Aligned_cols=96 Identities=11% Similarity=0.129 Sum_probs=77.7
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
.....+...+.+.+.+++|....++..... ||.. ...+.+-.++.+.|+.++|.++|++....
T Consensus 121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~-------------~~~~~~a~~l~~~g~~~~A~~~y~~~~~~-- 183 (694)
T PRK15179 121 EAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSA-------------REILLEAKSWDEIGQSEQADACFERLSRQ-- 183 (694)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCH-------------HHHHHHHHHHHHhcchHHHHHHHHHHHhc--
Confidence 445667788889999999999999987753 5443 34556677888999999999999999883
Q ss_pred Ccc-HHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 86 KHD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 86 ~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
.|+ ..++..+=.++...|+.++|...|+.-...
T Consensus 184 ~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 184 HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444 678888888999999999999999988554
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.20 E-value=1 Score=40.17 Aligned_cols=145 Identities=15% Similarity=0.211 Sum_probs=101.3
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHH-hCCCC---chHHHhHHHHHhhhcc-------------------chHHHHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGN---DIFVGSAPINIYCNCG-------------------VTWNEMIH 62 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~---~~~~~~~li~~~~~~~-------------------~~~~~li~ 62 (156)
..|-.-|......+++++|++++++... -++.- -...|.++++.--..| ..|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 5678888889999999999999998754 33322 2345666665544444 56788999
Q ss_pred HHHcCCCHHHHHHHHHHHHHC-CCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC-----------------
Q 041561 63 GYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK----------------- 124 (156)
Q Consensus 63 ~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------- 124 (156)
-|.+.+..++|-++|+.|.++ | -....|....+.+.+..+-+.|..++.+-.+- .|.
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhhc
Confidence 999999999999999999875 4 35667888888888888877777766544221 111
Q ss_pred c------------CCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 125 C------------LMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 125 c------------~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
| -...+.-.-.|+..|..-.++|+.+.++.+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHH
Confidence 1 111112235688888888888888877654
No 128
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=95.17 E-value=0.11 Score=31.99 Aligned_cols=64 Identities=8% Similarity=0.074 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHH
Q 041561 69 YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSS 142 (156)
Q Consensus 69 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~ 142 (156)
|.-++.+-++.+..-.+.|+.....+.++||-|.+|+..|.++|+..+.+. ..+...|..+++-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~----------~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC----------GAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc----------cCchhhHHHHHHH
Confidence 344556666666667899999999999999999999999999999996563 2345577777653
No 129
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=95.16 E-value=0.087 Score=32.73 Aligned_cols=71 Identities=8% Similarity=0.163 Sum_probs=47.1
Q ss_pred HHHHcCCCHH--HHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHH
Q 041561 62 HGYAENEYVE--QAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDL 139 (156)
Q Consensus 62 ~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~l 139 (156)
..|....+.| +..+-+..+....+.|+.....+.|+||-|..|+..|.++|+..+.+.| +....|..+
T Consensus 16 ~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~----------~~~~~Y~~~ 85 (108)
T PF02284_consen 16 EKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG----------NKKEIYPYI 85 (108)
T ss_dssp HHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT----------T-TTHHHHH
T ss_pred HHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc----------ChHHHHHHH
Confidence 3444444333 4555566666678999999999999999999999999999999976643 333378877
Q ss_pred HHH
Q 041561 140 VSS 142 (156)
Q Consensus 140 i~~ 142 (156)
++-
T Consensus 86 lqE 88 (108)
T PF02284_consen 86 LQE 88 (108)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 130
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.03 E-value=0.38 Score=36.29 Aligned_cols=80 Identities=15% Similarity=0.005 Sum_probs=44.0
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHH-HhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHH
Q 041561 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL-TPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141 (156)
Q Consensus 63 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~ 141 (156)
.+.-..+++.|..++..-.+. .|+.+--++++ +-....|+.+.|.+.++...++. ..--..+-..|..
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn---------~~yl~evl~~L~~ 257 (389)
T COG2956 189 QALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQN---------PEYLSEVLEMLYE 257 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhC---------hHHHHHHHHHHHH
Confidence 333344555555555554432 33344333333 34446677777777777663331 1223355677778
Q ss_pred HHhhcCCHhHHh
Q 041561 142 SCQVHSNVRLAK 153 (156)
Q Consensus 142 ~~~~~g~~~~a~ 153 (156)
+|...|++++..
T Consensus 258 ~Y~~lg~~~~~~ 269 (389)
T COG2956 258 CYAQLGKPAEGL 269 (389)
T ss_pred HHHHhCCHHHHH
Confidence 888888887654
No 131
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.80 E-value=0.19 Score=28.55 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=44.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 62 HGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 62 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
..|.+.+++++|.++++.+...... +...+...-..+.+.|++++|...|+...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5678999999999999999885422 444566666777899999999999999943
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.79 E-value=0.79 Score=33.66 Aligned_cols=108 Identities=6% Similarity=-0.050 Sum_probs=70.0
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHH
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF 92 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 92 (156)
..|...++.++|++....... .+...-| ...+-+..++|-|.+..+.|.+- -+..|.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~----lE~~Al~----------------VqI~lk~~r~d~A~~~lk~mq~i---ded~tL 172 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGEN----LEAAALN----------------VQILLKMHRFDLAEKELKKMQQI---DEDATL 172 (299)
T ss_pred HHhhcCCChHHHHHHHhccch----HHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHcc---chHHHH
Confidence 346678888888887776211 2221111 12234555678888888888753 244555
Q ss_pred HHHHHhh----cCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHh
Q 041561 93 VAILTPC----SHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAK 153 (156)
Q Consensus 93 ~~ll~~~----~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~ 153 (156)
+.|-.+. ...+.+.+|+-+|++|..+ ..|+..+-|-+..++...|++++|+
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k----------~~~T~~llnG~Av~~l~~~~~eeAe 227 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEK----------TPPTPLLLNGQAVCHLQLGRYEEAE 227 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcc----------cCCChHHHccHHHHHHHhcCHHHHH
Confidence 5444443 3455788888888888554 4678888888888888888888875
No 133
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.71 E-value=0.55 Score=38.56 Aligned_cols=46 Identities=4% Similarity=0.026 Sum_probs=35.4
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
-|++|-+.|.+.|.+++|..++++-.+. ...+.-|+.+.++|++-.
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFE 295 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHH
Confidence 4889999999999999999999987654 234555666677776554
No 134
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.68 E-value=1 Score=36.28 Aligned_cols=109 Identities=11% Similarity=0.052 Sum_probs=76.0
Q ss_pred CCcccHHHHHHHhcCC-----CchHHHHHHHHHHHHhCCCCch-HHHhHHHHHhhhcc----------------------
Q 041561 3 PTQFPFTTVLSSCAKL-----SSLFLGRQILTRIVKDGYGNDI-FVGSAPINIYCNCG---------------------- 54 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~---------------------- 54 (156)
.|...|...+++.... ++...|..+|++..+. .||- ..|..+-.+|....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4567888888886533 2366788888888764 3442 23332222221110
Q ss_pred --------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 55 --------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
..|..+--.....|++++|...|++...-. |+...|..+-+.+...|+.++|.+.+.+-
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555455556799999999999988744 78889999999999999999999999876
No 135
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.61 E-value=0.87 Score=38.50 Aligned_cols=120 Identities=15% Similarity=0.094 Sum_probs=87.6
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHhCCCC--chHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc
Q 041561 11 VLSSCAKLSSLFLGRQILTRIVKDGYGN--DIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD 88 (156)
Q Consensus 11 ll~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 88 (156)
++-++.+....+..+.+...+++..+.| ++ ..|--+-++|-..|.+++|+++|..+.....--+
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~--------------dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDV--------------DLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhH--------------HHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 3344556666777777777777776433 33 5667788889999999999999999987655556
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCC-hhhHHHHHHHHhhcCCHhHHhhh
Q 041561 89 GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD-LVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd-~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
...|-.+-..|...|..++|.+.++..... .|| .-.=-+|=..+-+.|+.|+|.++
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~-----------~p~~~D~Ri~Lasl~~~~g~~EkalEt 505 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLIL-----------APDNLDARITLASLYQQLGNHEKALET 505 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhc-----------CCCchhhhhhHHHHHHhcCCHHHHHHH
Confidence 778888888888999999999999988433 332 22233455667888999988764
No 136
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.60 E-value=0.31 Score=39.93 Aligned_cols=27 Identities=4% Similarity=0.074 Sum_probs=14.0
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVK 33 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~ 33 (156)
+|.-+-..+-..|++++|..+++.+.+
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aie 144 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIE 144 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHh
Confidence 344444444455555555555555544
No 137
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.37 E-value=1.2 Score=31.39 Aligned_cols=112 Identities=8% Similarity=-0.054 Sum_probs=75.1
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCC-CCch-HHHhHHHHHhhhc--------c--------------------ch
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDI-FVGSAPINIYCNC--------G--------------------VT 56 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~-~~~~~li~~~~~~--------~--------------------~~ 56 (156)
++..+-..+.+.|+++.|...++.+.+..- .|.. ..+..+-..|.+. | ..
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 151 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA 151 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence 455666777888999999999998876432 1211 1222222222221 1 01
Q ss_pred H-----------------HHHHHHHHcCCCHHHHHHHHHHHHHCCC-Cc-cHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 57 W-----------------NEMIHGYAENEYVEQAISLYKDIIASGV-KH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 57 ~-----------------~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
+ -.+-..|.+.|++++|...|++..+... .| ....+..+..++.+.|+.++|...++.+..
T Consensus 152 ~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 152 PDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 1344567788999999999999887532 23 356888999999999999999999998855
Q ss_pred c
Q 041561 118 D 118 (156)
Q Consensus 118 ~ 118 (156)
+
T Consensus 232 ~ 232 (235)
T TIGR03302 232 N 232 (235)
T ss_pred h
Confidence 4
No 138
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.21 E-value=0.33 Score=40.65 Aligned_cols=106 Identities=11% Similarity=0.137 Sum_probs=71.7
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
-|..+-.-|+..|+++.|+++|-+. ..|+-.|..|.+.|++++|.++-.+. .|..
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~-----------------------~~~~dai~my~k~~kw~da~kla~e~--~~~e 821 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEA-----------------------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPE 821 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhc-----------------------chhHHHHHHHhccccHHHHHHHHHHh--cCch
Confidence 3566778889999999999988765 44566788888999998888876543 3555
Q ss_pred ccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 87 HDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.....|-+--.-+-+.|++.+|.+++-.+ -.||. -|+.|-++|..+...++
T Consensus 822 ~t~~~yiakaedldehgkf~eaeqlyiti-------------~~p~~-----aiqmydk~~~~ddmirl 872 (1636)
T KOG3616|consen 822 ATISLYIAKAEDLDEHGKFAEAEQLYITI-------------GEPDK-----AIQMYDKHGLDDDMIRL 872 (1636)
T ss_pred hHHHHHHHhHHhHHhhcchhhhhheeEEc-------------cCchH-----HHHHHHhhCcchHHHHH
Confidence 55556655555566777777777776555 13443 35566666666655543
No 139
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.20 E-value=1.5 Score=31.59 Aligned_cols=104 Identities=10% Similarity=0.040 Sum_probs=58.2
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHcCCCH
Q 041561 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAENEYV 70 (156)
Q Consensus 11 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~g~~ 70 (156)
+=-+|.+.|+...|+.-++...++. +.+..+|..+-..|-+.| ..-|.-=.=+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3345667788888888888777653 124455666666666666 1112222223556667
Q ss_pred HHHHHHHHHHHHCC-CCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 71 EQAISLYKDIIASG-VKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 71 ~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
++|...|++-...- +.--..||..+--+-.+.|+.+.|+..|.+-
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 77777776665531 1111234444444444666666666666654
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.05 E-value=0.58 Score=39.57 Aligned_cols=77 Identities=10% Similarity=0.090 Sum_probs=42.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhh
Q 041561 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV 145 (156)
Q Consensus 66 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~ 145 (156)
+.|..++|..+++....-+.. |..|.-.+-..|-+.+++|++..+++..... -|+...-..+..+|.+
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-----------~P~eell~~lFmayvR 122 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK-----------YPSEELLYHLFMAYVR 122 (932)
T ss_pred HhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-----------CCcHHHHHHHHHHHHH
Confidence 455556666555555443333 5555555555555666666666666655332 3455555555566666
Q ss_pred cCCHhHHhh
Q 041561 146 HSNVRLAKK 154 (156)
Q Consensus 146 ~g~~~~a~~ 154 (156)
.+++.+-++
T Consensus 123 ~~~yk~qQk 131 (932)
T KOG2053|consen 123 EKSYKKQQK 131 (932)
T ss_pred HHHHHHHHH
Confidence 555554443
No 141
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.99 E-value=2 Score=35.47 Aligned_cols=27 Identities=4% Similarity=0.127 Sum_probs=14.2
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVK 33 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~ 33 (156)
.|+-+-.++-..|++.+|++.++....
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 445555555555555555555554443
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.93 E-value=0.34 Score=27.15 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=48.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCC-chHHHHHHHHhc
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG-LVYAEVEIFNSM 115 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m 115 (156)
.|..+=..+...|++++|.+.|++..+.. .-+...|..+-.++.+.| +.++|...++.-
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 56777788899999999999999988753 225557777778888898 799999988865
No 143
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.85 E-value=0.095 Score=34.25 Aligned_cols=118 Identities=17% Similarity=0.240 Sum_probs=65.9
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc
Q 041561 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD 88 (156)
Q Consensus 9 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 88 (156)
..+++.+.+.+.++.....++.+...+-..+....+.++ ..|++.+++++..++++ ..+
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~--------------~ly~~~~~~~~l~~~L~-------~~~ 69 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLL--------------ELYIKYDPYEKLLEFLK-------TSN 69 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHH--------------HHHHCTTTCCHHHHTTT-------SSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHH--------------HHHHhcCCchHHHHHcc-------ccc
Confidence 346778888889999999999998776666675555554 45555554455555554 111
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC-------------cCCCCCCChhhHHHHHHHHhhcCCH
Q 041561 89 GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK-------------CLMPYKDDLVVWGDLVSSCQVHSNV 149 (156)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------------c~~~~~pd~~~~~~li~~~~~~g~~ 149 (156)
.+-...+++.|-+.+.++++.-++..+ ..+.---. +-. -.+|..+|..++..|...+..
T Consensus 70 ~yd~~~~~~~c~~~~l~~~a~~Ly~~~-~~~~~al~i~~~~~~~~~a~e~~~-~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 70 NYDLDKALRLCEKHGLYEEAVYLYSKL-GNHDEALEILHKLKDYEEAIEYAK-KVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp SS-CTHHHHHHHTTTSHHHHHHHHHCC-TTHTTCSSTSSSTHCSCCCTTTGG-GCSSSHHHHHHHHHHCTSTCT
T ss_pred ccCHHHHHHHHHhcchHHHHHHHHHHc-ccHHHHHHHHHHHccHHHHHHHHH-hcCcHHHHHHHHHHHHhcCcc
Confidence 133334455555555555555555544 21110000 001 135688899999888776653
No 144
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.71 E-value=1.8 Score=31.73 Aligned_cols=99 Identities=7% Similarity=-0.013 Sum_probs=65.1
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCch-HHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDI-FVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
.|...+....+.|+.++|...|+.+.+.- |+. .+- ..+--+-..|...|++++|...|+.+.+.-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~-----------~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP 211 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQP-----------NANYWLGQLNYNKGKKDDAAYYFASVVKNYP 211 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 45555555566789999999999887642 222 000 1223455667889999999999999986421
Q ss_pred C-c-cHHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 86 K-H-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 86 ~-p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
. | ....+-.+...+...|+.++|..+++.+.+.
T Consensus 212 ~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 1 1222333344555889999999999998655
No 145
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.71 E-value=1.3 Score=29.23 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=66.1
Q ss_pred CCCchHHHHHHHHHHHHhC-C-CCchHHHhHH------------------------------HHHhhhcc---chHHHHH
Q 041561 17 KLSSLFLGRQILTRIVKDG-Y-GNDIFVGSAP------------------------------INIYCNCG---VTWNEMI 61 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g-~-~~~~~~~~~l------------------------------i~~~~~~~---~~~~~li 61 (156)
-.|++++..++......+. . .-|++.+|.+ +.+|++.+ ...+..+
T Consensus 14 ldG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~AL 93 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDLAL 93 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHHHH
T ss_pred HhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHHHH
Confidence 3467777777777765543 2 3456666644 33343333 6677788
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 62 HGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 62 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
+.....|.-|+..++..++.+++ .|+....-.+-.||.+.|+..++-+++.+-
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 88899999999999999987643 677888888999999999999999998876
No 146
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.62 E-value=0.85 Score=34.42 Aligned_cols=82 Identities=18% Similarity=0.114 Sum_probs=65.3
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
.+-+..|.-+...|+...|.++-.+.+ .||..-|-.-|++++..+++++-.++-.. +.++.
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---------------kKsPI 238 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---------------KKSPI 238 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---------------CCCCC
Confidence 455666777788899988888877774 68999999999999999999988776542 11346
Q ss_pred hHHHHHHHHhhcCCHhHHhhh
Q 041561 135 VWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~ 155 (156)
=|..++.+|...|+.++|.+.
T Consensus 239 GyepFv~~~~~~~~~~eA~~y 259 (319)
T PF04840_consen 239 GYEPFVEACLKYGNKKEASKY 259 (319)
T ss_pred ChHHHHHHHHHCCCHHHHHHH
Confidence 677799999999999998764
No 147
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.47 E-value=2.3 Score=35.16 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=60.5
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC----------
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK---------- 124 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---------- 124 (156)
..|.-.|.=...++.++-+.++++.-.+ +.| ..-+-.|.-++..+++++|.+.+.....+-.+...
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLK--VAP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHh--cCH--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 4555556655666666666666666543 222 23555566666777777777666665433222211
Q ss_pred --c---------------------CCCCCCCh--hhHHHHHHHHhhcCCHhHHhhh
Q 041561 125 --C---------------------LMPYKDDL--VVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 125 --c---------------------~~~~~pd~--~~~~~li~~~~~~g~~~~a~~~ 155 (156)
| +.+.-||- ..|++|-.-|.+.|++|+|+.+
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDv 270 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDV 270 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 3 22233443 6799999999999999999864
No 148
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.25 E-value=2.6 Score=31.26 Aligned_cols=98 Identities=5% Similarity=-0.035 Sum_probs=76.3
Q ss_pred hHHHhHHHHHhhhcc--chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 40 IFVGSAPINIYCNCG--VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 40 ~~~~~~li~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
...|-..++.+.+.- .++..++..+...|+.+.+.+.++++.... .-|+..|..++.+|.+.|+...|.+.++++.+
T Consensus 137 f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 137 FDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 555555555554443 678899999999999999999999998765 45788999999999999999999999998854
Q ss_pred ccccCCCcCCCCCCChhhHHHHHHH
Q 041561 118 DHEVKPKCLMPYKDDLVVWGDLVSS 142 (156)
Q Consensus 118 ~~~~~~~c~~~~~pd~~~~~~li~~ 142 (156)
...- ..++.|...++......
T Consensus 216 ~~~e----dlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 216 TLAE----ELGIDPAPELRALYEEI 236 (280)
T ss_pred Hhhh----hcCCCccHHHHHHHHHH
Confidence 1111 22368888888777766
No 149
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.21 E-value=1.3 Score=29.79 Aligned_cols=88 Identities=8% Similarity=-0.021 Sum_probs=65.3
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 041561 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVA 94 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 94 (156)
+-..|++++|+++|..+.... |... .-|-.|=.++-..|++++|.+.|.....-.+ -|...+-.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D--p~~~-------------~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ 108 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD--AWSF-------------DYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWA 108 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cccH-------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHH
Confidence 457799999999999987643 3222 4466667777889999999999999877553 34445555
Q ss_pred HHHhhcCCCchHHHHHHHHhcccc
Q 041561 95 ILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 95 ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
+=.++...|+.+.|++-|+.....
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566777899999999999977443
No 150
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.13 E-value=2.4 Score=34.56 Aligned_cols=118 Identities=9% Similarity=0.040 Sum_probs=70.9
Q ss_pred HHHHHhcCCCchHHHHHHHH--------HHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041561 10 TVLSSCAKLSSLFLGRQILT--------RIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDII 81 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~--------~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 81 (156)
+.+......|+++.|.+++. .+.+.+..|-.+ ..+..-+.+.++-+.|..++++-.
T Consensus 381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V----------------~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 381 LRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV----------------GAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH----------------HHHHHHHHhccCCccHHHHHHHHH
Confidence 45666778899999999999 555555555443 344444555555555555555543
Q ss_pred HC--CCCccHHHHHHHHH----hhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 82 AS--GVKHDGVTFVAILT----PCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 82 ~~--g~~p~~~t~~~ll~----~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
.. .-.+......+++. .--+.|+.++|..+++++.+. -.+|..+..-++.+|++. ++++|..
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~----------n~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF----------NPNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh----------CCchHHHHHHHHHHHHhc-CHHHHHH
Confidence 21 11222233333332 223568888888888888443 256788888888888877 6666654
No 151
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=93.11 E-value=1.1 Score=37.21 Aligned_cols=117 Identities=14% Similarity=0.153 Sum_probs=82.5
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHH
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF 92 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 92 (156)
..+-+.|-...|..+|+.+ ..|.-+|.+|...|+-++|..+..+-.+ -.||..-|
T Consensus 406 ell~slGitksAl~I~Erl-----------------------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~ly 460 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERL-----------------------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLY 460 (777)
T ss_pred HHHHHcchHHHHHHHHHhH-----------------------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhH
Confidence 3444556666666666665 6778888888888888888888877766 46778888
Q ss_pred HHHHHhhcCCCchHHHHHHHHhcccc--cc----cCC--C--------------------------c-------------
Q 041561 93 VAILTPCSHSGLVYAEVEIFNSMEHD--HE----VKP--K--------------------------C------------- 125 (156)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~m~~~--~~----~~~--~--------------------------c------------- 125 (156)
-.+-+..-...-+++|.+++++...+ .. +.. + |
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 88888777777777787777766443 11 111 1 1
Q ss_pred ----CCCCCCCh-hhHHHHHHHHhhcCCHhHHhh
Q 041561 126 ----LMPYKDDL-VVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 126 ----~~~~~pd~-~~~~~li~~~~~~g~~~~a~~ 154 (156)
-....||. ..||.+=.+|.+.|+..+|.+
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 33356655 569999999999999988875
No 152
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=1.7 Score=37.87 Aligned_cols=126 Identities=12% Similarity=0.139 Sum_probs=64.7
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
|+..|.-+++.+.+.|.+++..+.+-..++..-.|... +.||-+|++.+++.+.+++.
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id----------------~eLi~AyAkt~rl~elE~fi------ 1189 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID----------------SELIFAYAKTNRLTELEEFI------ 1189 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch----------------HHHHHHHHHhchHHHHHHHh------
Confidence 44555666666666666666555555444444444432 45666666666665544443
Q ss_pred CCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC-------c-----CCCCCCChhhHHHHHHHHhhcCCHhH
Q 041561 84 GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK-------C-----LMPYKDDLVVWGDLVSSCQVHSNVRL 151 (156)
Q Consensus 84 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------c-----~~~~~pd~~~~~~li~~~~~~g~~~~ 151 (156)
..||..-.-.+=+-|-..+.++.|+-++... ..+.-... . ...-..+.+||.-+=-+|.-.+.+..
T Consensus 1190 -~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1190 -AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred -cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhH
Confidence 3444444444444444555555554444433 11110000 0 00113466778777777777777766
Q ss_pred Hh
Q 041561 152 AK 153 (156)
Q Consensus 152 a~ 153 (156)
|.
T Consensus 1268 AQ 1269 (1666)
T KOG0985|consen 1268 AQ 1269 (1666)
T ss_pred HH
Confidence 64
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.86 E-value=0.83 Score=25.51 Aligned_cols=63 Identities=6% Similarity=0.008 Sum_probs=49.8
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCC-CHHHHHHHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENE-YVEQAISLYKDIIA 82 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 82 (156)
+.+|..+=..+.+.|++++|...|+...+.. |+.. ..|..+-.+|.+.| ++++|.+.|++-.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~-------------~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNA-------------EAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHH-------------HHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCH-------------HHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4566777777889999999999999998863 4332 56777778888999 79999999987654
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=92.84 E-value=1.1 Score=30.19 Aligned_cols=82 Identities=12% Similarity=-0.004 Sum_probs=59.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhc-CCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHH
Q 041561 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS-HSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDL 139 (156)
Q Consensus 61 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~l 139 (156)
-.-+...|++++|.++|+-+.. +.|+...|--=+-+|. ..|++++|.+.+..-. ... +-|.+.+-.+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~-~L~---------~ddp~~~~~a 109 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA-QIK---------IDAPQAPWAA 109 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcC---------CCCchHHHHH
Confidence 3445689999999999999876 4555555444444444 6899999999999873 211 2366777777
Q ss_pred HHHHhhcCCHhHHhh
Q 041561 140 VSSCQVHSNVRLAKK 154 (156)
Q Consensus 140 i~~~~~~g~~~~a~~ 154 (156)
=.++...|+.+.|++
T Consensus 110 g~c~L~lG~~~~A~~ 124 (157)
T PRK15363 110 AECYLACDNVCYAIK 124 (157)
T ss_pred HHHHHHcCCHHHHHH
Confidence 788888888888875
No 155
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.84 E-value=0.43 Score=37.56 Aligned_cols=125 Identities=10% Similarity=0.036 Sum_probs=82.1
Q ss_pred CCCchHHHHHHHHHHHHhCC-CC----chHHHhHHHHHhhhcc-----------------chHHHHHHHHH--cCCCHHH
Q 041561 17 KLSSLFLGRQILTRIVKDGY-GN----DIFVGSAPINIYCNCG-----------------VTWNEMIHGYA--ENEYVEQ 72 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g~-~~----~~~~~~~li~~~~~~~-----------------~~~~~li~~~~--~~g~~~~ 72 (156)
+.+++++++.+|...-+.-- .| .-..-+.+|++|...+ ..|-.+..+.. +.++.++
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~k 97 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRK 97 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHH
Confidence 66889999999999855321 11 1345668888988887 44555554433 4566777
Q ss_pred HHHHHHHHHHC--C------------CCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHH
Q 041561 73 AISLYKDIIAS--G------------VKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGD 138 (156)
Q Consensus 73 a~~~~~~m~~~--g------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~ 138 (156)
|.+.+..=..+ + .-+|-+-=+...+++...|.+++++.+++++..+.= +..+.+|..+||.
T Consensus 98 al~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ll-----krE~~w~~d~yd~ 172 (549)
T PF07079_consen 98 ALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLL-----KRECEWNSDMYDR 172 (549)
T ss_pred HHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-----hhhhcccHHHHHH
Confidence 77776665443 2 233444445677888899999999999998854421 0013478999998
Q ss_pred HHHHHhhc
Q 041561 139 LVSSCQVH 146 (156)
Q Consensus 139 li~~~~~~ 146 (156)
.+-.+.++
T Consensus 173 ~vlmlsrS 180 (549)
T PF07079_consen 173 AVLMLSRS 180 (549)
T ss_pred HHHHHhHH
Confidence 66665554
No 156
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.83 E-value=2.5 Score=36.40 Aligned_cols=109 Identities=6% Similarity=0.026 Sum_probs=79.1
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhC-CCCchHHHhHHHHHhhhcc----------------------------
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCG---------------------------- 54 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~---------------------------- 54 (156)
+...+..|+..+-+.+++++|.++.+...+.. =.+....+..+ .|.+.+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHHHHHH
Confidence 34567788999999999999999999765542 23444444444 233332
Q ss_pred ---------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 55 ---------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
...-.+..+|-+.|+.+++.++|++..+-. .-|....|.+-..++.. ++++|.++...-.
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 334457777778899999999999999866 44666788888888877 9999998766553
No 157
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.50 E-value=1.5 Score=33.73 Aligned_cols=85 Identities=9% Similarity=0.099 Sum_probs=43.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHH
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGD 138 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~ 138 (156)
++.+.+.-..++|+++-.+...+.-=..-|.+-|| +-+|.+.-|+..+|+++|-.+. .. --.|..+|.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is-~~---------~ikn~~~Y~s 432 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRIS-GP---------EIKNKILYKS 432 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhc-Ch---------hhhhhHHHHH
Confidence 34444444445555555554444321222222222 4455666666777777766662 11 1245666666
Q ss_pred HH-HHHhhcCCHhHHhh
Q 041561 139 LV-SSCQVHSNVRLAKK 154 (156)
Q Consensus 139 li-~~~~~~g~~~~a~~ 154 (156)
|+ ..|.+++.++.|..
T Consensus 433 ~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHhcCCchHHHH
Confidence 65 55666666666643
No 158
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=92.40 E-value=2.2 Score=28.36 Aligned_cols=84 Identities=13% Similarity=0.161 Sum_probs=63.6
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHC-C--C--CccHHHHHHHHHhhcCCCc-hHHHHHHHHhcccccccCCCcCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIAS-G--V--KHDGVTFVAILTPCSHSGL-VYAEVEIFNSMEHDHEVKPKCLMP 128 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--~--~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~c~~~ 128 (156)
...|.++.-.+..+.+....++++.+..- . + .-+..+|.+++++.+++.. ---+..+|+.|++ .+
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~-------- 110 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-ND-------- 110 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH-cC--------
Confidence 44688888888888888888888887531 0 1 3466789999999988777 4457789999954 43
Q ss_pred CCCChhhHHHHHHHHhhcC
Q 041561 129 YKDDLVVWGDLVSSCQVHS 147 (156)
Q Consensus 129 ~~pd~~~~~~li~~~~~~g 147 (156)
.+++..-|-.||+++.+.-
T Consensus 111 ~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 111 IEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred CCCCHHHHHHHHHHHHcCC
Confidence 5789999999999987653
No 159
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.37 E-value=1.2 Score=25.15 Aligned_cols=57 Identities=11% Similarity=0.021 Sum_probs=46.3
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASG 84 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 84 (156)
..+.+.++++.|.++++.+.+.+ |+.. ..|...-..+.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~-------------~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDP-------------ELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccc-------------hhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 46788999999999999998863 4322 566667788899999999999999998643
No 160
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=4.7 Score=32.14 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=68.8
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCC-CCCC-
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMP-YKDD- 132 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~-~~pd- 132 (156)
..|.+|=++|.+.+++++|.+-|..-..-|-. +...+..+-+.+-+.++..+|.+.|+...+.... -+ ..|.
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~-----eg~~~~~t 506 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL-----EGEIDDET 506 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-----hcccchHH
Confidence 78999999999999999999999998876533 5678889999999999999999998877543210 01 2221
Q ss_pred hhhHHHHHHHHhhcCCHhHHhh
Q 041561 133 LVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~a~~ 154 (156)
...-.-|-.-+-+.+++++|..
T Consensus 507 ~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 507 IKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHHHHHHHHhhcchHHHHH
Confidence 1222224466778888888765
No 161
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.09 E-value=6.2 Score=34.72 Aligned_cols=83 Identities=12% Similarity=0.208 Sum_probs=60.7
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..|+.+-.+--+.|.+.+|.+-|-. .-|...|.-+|+.+++.|.+++-...+..-+++. -+|..
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~---------~E~~i- 1168 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV---------REPYI- 1168 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh---------cCccc-
Confidence 5677777777777777777766643 2367789999999999999999988887654332 23433
Q ss_pred hHHHHHHHHhhcCCHhHHhh
Q 041561 135 VWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~ 154 (156)
=..||-+|++.+++.+-++
T Consensus 1169 -d~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1169 -DSELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred -hHHHHHHHHHhchHHHHHH
Confidence 3568999999998876554
No 162
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.98 E-value=0.37 Score=23.60 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=18.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDII 81 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~ 81 (156)
+|+.|-..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677778888888888888887743
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=91.94 E-value=3.8 Score=30.12 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=79.7
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHH---hC-CCCchHHHhHHHHHhhhcc------chHHHHHHHHHcC-CCHHHHHHHHH
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVK---DG-YGNDIFVGSAPINIYCNCG------VTWNEMIHGYAEN-EYVEQAISLYK 78 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~---~g-~~~~~~~~~~li~~~~~~~------~~~~~li~~~~~~-g~~~~a~~~~~ 78 (156)
.....+.+.++...+-..+.+... .+ ..--...|..-+..|.+.| ..+..+-..|-.. |++++|.+.|+
T Consensus 60 kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~ 139 (282)
T PF14938_consen 60 KAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQ 139 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333444445555554444444322 11 1112345566667777776 5677777888888 89999999888
Q ss_pred HHHH----CCCCcc--HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCC-CCCChh-hHHHHHHHHhhcCCHh
Q 041561 79 DIIA----SGVKHD--GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMP-YKDDLV-VWGDLVSSCQVHSNVR 150 (156)
Q Consensus 79 ~m~~----~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~-~~pd~~-~~~~li~~~~~~g~~~ 150 (156)
+-.+ .| .+. ...+..+...+.+.|++++|.++|++.....- ..+ .+++.. .|-..+-.+...||+.
T Consensus 140 ~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l-----~~~l~~~~~~~~~l~a~l~~L~~~D~v 213 (282)
T PF14938_consen 140 KAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL-----ENNLLKYSAKEYFLKAILCHLAMGDYV 213 (282)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC-----CHCTTGHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh-----cccccchhHHHHHHHHHHHHHHcCCHH
Confidence 8653 33 222 33566677888899999999999998743311 001 233333 3344455777788888
Q ss_pred HHhh
Q 041561 151 LAKK 154 (156)
Q Consensus 151 ~a~~ 154 (156)
.|.+
T Consensus 214 ~A~~ 217 (282)
T PF14938_consen 214 AARK 217 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 164
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=91.87 E-value=2.6 Score=28.02 Aligned_cols=92 Identities=8% Similarity=0.119 Sum_probs=60.4
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCC
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEY-VEQAISLYKDIIASGVK 86 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~ 86 (156)
.|+++.-.+..++.....++++.+.. +.++ .+..+.. ..+|++++.+.+...- ---+..+|.-|++.+.+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~--l~~~------~~~~~~~-~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~ 112 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHF--LNTD------NIIGWLD-NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIE 112 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHH--hhHH------HHhhhcc-cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCC
Confidence 45556665666666666666666621 0011 0000000 0789999999977766 34567799999998999
Q ss_pred ccHHHHHHHHHhhcCCCchHHH
Q 041561 87 HDGVTFVAILTPCSHSGLVYAE 108 (156)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a 108 (156)
++..-|..+|+++.+....+..
T Consensus 113 ~t~~dy~~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 113 FTPSDYSCLIKAALRGYFHDSL 134 (145)
T ss_pred CCHHHHHHHHHHHHcCCCCcch
Confidence 9999999999999877554443
No 165
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=91.75 E-value=1 Score=35.50 Aligned_cols=92 Identities=5% Similarity=-0.009 Sum_probs=65.1
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccH----HHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDG----VTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYK 130 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~ 130 (156)
..|+.+-.+|.+.|++++|...|++-.+ +.|+. .+|..+-.+|++.|++++|.+.++...+.....-.+ +.-.
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~-i~~D 152 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFST-ILND 152 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHH-HHhC
Confidence 7789999999999999999999999766 35553 468999999999999999999888774321000000 0011
Q ss_pred C------ChhhHHHHHHHHhhcCCH
Q 041561 131 D------DLVVWGDLVSSCQVHSNV 149 (156)
Q Consensus 131 p------d~~~~~~li~~~~~~g~~ 149 (156)
| +..-|..++....+.|..
T Consensus 153 pdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 153 PDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred cchhhhcccHHHHHHHHHHHHhCCc
Confidence 2 223677777777777753
No 166
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.32 E-value=3.3 Score=28.21 Aligned_cols=29 Identities=7% Similarity=0.049 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 26 QILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 26 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
+....+.+.|+.|+...+..+|+.+.+.|
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~ 43 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNG 43 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 34444556889999977777776666666
No 167
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.17 E-value=0.76 Score=34.30 Aligned_cols=67 Identities=15% Similarity=0.324 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHh--hcCC----CchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHH
Q 041561 70 VEQAISLYKDIIASGVKHDGVTFVAILTP--CSHS----GLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSS 142 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~----~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~ 142 (156)
+++..++++.|++.|+.-+.++|-+..-. .... ..+..+..+|+.|+++|.+.. .++...+.+|+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT------s~~D~~~a~lLA~ 150 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT------SPEDYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc------CccchhHHHHHhc
Confidence 56778899999999999999988773322 2222 356678999999988887644 3555556655544
No 168
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.16 E-value=0.62 Score=35.73 Aligned_cols=86 Identities=9% Similarity=0.201 Sum_probs=54.5
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHH
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF 92 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 92 (156)
++.+..|+..+|+++|-....-.+ .|..+|- +.|.++|.+++.++-||++|-.+.. ..+.++.
T Consensus 401 QAk~atgny~eaEelf~~is~~~i-kn~~~Y~-------------s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsL 463 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEI-KNKILYK-------------SMLARCYIRNKKPQLAWDMMLKTNT---PSERFSL 463 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhh-hhhHHHH-------------HHHHHHHHhcCCchHHHHHHHhcCC---chhHHHH
Confidence 444555666666666644432211 2332222 3356788999999999888766542 3345554
Q ss_pred HHHH-HhhcCCCchHHHHHHHHhc
Q 041561 93 VAIL-TPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 93 ~~ll-~~~~~~~~~~~a~~~~~~m 115 (156)
-.+| +-|-+.+.+--|..-|+.+
T Consensus 464 LqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 464 LQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4444 6677899998888888888
No 169
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.03 E-value=1.9 Score=34.87 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=44.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhh
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVV 135 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~ 135 (156)
+++.|=.+|.+.+..++|...|+.-.... .-|..|+.++--.+...|+++.|.+.|..-. . ++||-.+
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL---~--------l~p~n~~ 524 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL---A--------LKPDNIF 524 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH---h--------cCCccHH
Confidence 35566666666777777777776655432 2244455555445556677777777666441 1 4666666
Q ss_pred HHHHHHHHh
Q 041561 136 WGDLVSSCQ 144 (156)
Q Consensus 136 ~~~li~~~~ 144 (156)
-..|+..+.
T Consensus 525 ~~~lL~~ai 533 (611)
T KOG1173|consen 525 ISELLKLAI 533 (611)
T ss_pred HHHHHHHHH
Confidence 666665443
No 170
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.86 E-value=3.8 Score=27.97 Aligned_cols=109 Identities=12% Similarity=0.064 Sum_probs=74.9
Q ss_pred CCCCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhh-hc--------------cchHHHHHHHHH
Q 041561 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC-NC--------------GVTWNEMIHGYA 65 (156)
Q Consensus 1 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~--------------~~~~~~li~~~~ 65 (156)
++|+...|..+++.+.+.|.... +.++.+.++-+|...-...+-.+. +. +..+..++..+-
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL 100 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLL 100 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 46778899999999999998544 455667777666544443333222 22 147888889999
Q ss_pred cCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 66 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
..|++-+|.++.+.... -+...-..++++-.+.+|...-..+|..+..
T Consensus 101 ~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 101 SKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999998877532 2233445568888888887777777766643
No 171
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=90.74 E-value=6.7 Score=30.74 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=60.8
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchHHHhHHHH-Hhhhc---c--------------------chHHHHHHHHHcCCCHHH
Q 041561 17 KLSSLFLGRQILTRIVKDGYGNDIFVGSAPIN-IYCNC---G--------------------VTWNEMIHGYAENEYVEQ 72 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~-~~~~~---~--------------------~~~~~li~~~~~~g~~~~ 72 (156)
-.|+.+.|++-|+-|... +.+--.=++ .|... | -.+.+.+...|..|+++.
T Consensus 132 ~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred hcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHH
Confidence 358899999999998753 222111111 11111 1 678899999999999999
Q ss_pred HHHHHHHHHHC---------------------------------------CCCccHHHH-HHHHHhhcCCCchHHHHHHH
Q 041561 73 AISLYKDIIAS---------------------------------------GVKHDGVTF-VAILTPCSHSGLVYAEVEIF 112 (156)
Q Consensus 73 a~~~~~~m~~~---------------------------------------g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~ 112 (156)
|+++.+.-+.. .+.||-+.- ..--+++.+.|++.++-.++
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 99999874332 133443322 22346677788888888888
Q ss_pred Hhc
Q 041561 113 NSM 115 (156)
Q Consensus 113 ~~m 115 (156)
+.+
T Consensus 287 E~a 289 (531)
T COG3898 287 ETA 289 (531)
T ss_pred HHH
Confidence 877
No 172
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.71 E-value=2.8 Score=32.01 Aligned_cols=84 Identities=8% Similarity=-0.098 Sum_probs=61.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHH
Q 041561 58 NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG 137 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~ 137 (156)
+.|=++|-+.|.+++|.+.|+.-.+....| .||-.+-+.|-+..+...|..++.+-... .|-.+||-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~--dTfllLskvY~ridQP~~AL~~~~~gld~-----------fP~~VT~l 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP--DTFLLLSKVYQRIDQPERALLVIGEGLDS-----------FPFDVTYL 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch--hHHHHHHHHHHHhccHHHHHHHHhhhhhc-----------CCchhhhh
Confidence 568889999999999999998877765444 46666788999999999999999877433 45555543
Q ss_pred H-HHHHHhhcCCHhHHhh
Q 041561 138 D-LVSSCQVHSNVRLAKK 154 (156)
Q Consensus 138 ~-li~~~~~~g~~~~a~~ 154 (156)
. +-..+-..++.++|.+
T Consensus 294 ~g~ARi~eam~~~~~a~~ 311 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQ 311 (478)
T ss_pred hhhHHHHHHHHhHHHHHH
Confidence 3 3355555666666654
No 173
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.69 E-value=0.18 Score=32.94 Aligned_cols=94 Identities=11% Similarity=0.083 Sum_probs=64.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHH
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGD 138 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~ 138 (156)
.+|..+-+.+.++...++++.+...+..-+....+.++..|++.++.++..++++.. ..+ ...--...-.....|..
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-~~y--d~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-NNY--DLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-SSS---CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-ccc--CHHHHHHHHHhcchHHH
Confidence 357777788899999999999998777778899999999999999888888887744 221 11100000012235666
Q ss_pred HHHHHhhcCCHhHHhhh
Q 041561 139 LVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 139 li~~~~~~g~~~~a~~~ 155 (156)
.+-.|.+.|+.++|.++
T Consensus 89 a~~Ly~~~~~~~~al~i 105 (143)
T PF00637_consen 89 AVYLYSKLGNHDEALEI 105 (143)
T ss_dssp HHHHHHCCTTHTTCSST
T ss_pred HHHHHHHcccHHHHHHH
Confidence 77788888888887654
No 174
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.65 E-value=0.73 Score=23.56 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=21.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
+|..+-.+|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566777888888888888888888764
No 175
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.64 E-value=4.9 Score=29.80 Aligned_cols=80 Identities=13% Similarity=0.075 Sum_probs=59.6
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH----
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA---- 82 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---- 82 (156)
++..+.+.+...|+.+.+...++++..... -|. ..|..+|.+|.+.|+...|.+.|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E--------------~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~e 219 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDE--------------PAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAE 219 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cch--------------HHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh
Confidence 344566666677777777777777665321 122 6788999999999999999999998875
Q ss_pred -CCCCccHHHHHHHHHhhcC
Q 041561 83 -SGVKHDGVTFVAILTPCSH 101 (156)
Q Consensus 83 -~g~~p~~~t~~~ll~~~~~ 101 (156)
-|+.|-..+.....+....
T Consensus 220 dlgi~P~~~~~~~y~~~~~~ 239 (280)
T COG3629 220 ELGIDPAPELRALYEEILRQ 239 (280)
T ss_pred hcCCCccHHHHHHHHHHhcc
Confidence 4999999998888887443
No 176
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=5.1 Score=31.59 Aligned_cols=136 Identities=11% Similarity=0.080 Sum_probs=74.8
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCC--CCchHHHhHHHHHhhhcc-----------------chHHHHHHHHHc
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGY--GNDIFVGSAPINIYCNCG-----------------VTWNEMIHGYAE 66 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~-----------------~~~~~li~~~~~ 66 (156)
.-...+-+.+...|+-+.+...|+....... ...-..|..|+..=+.+. ..|=.-......
T Consensus 233 hLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~ 312 (564)
T KOG1174|consen 233 HLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYD 312 (564)
T ss_pred HHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhh
Confidence 3344555566667777777777776554221 011122233332222111 122222333334
Q ss_pred CCCHHHHHHHHHHHHHCCCCccHHHHHHHH---HhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-ChhhHHHHHHH
Q 041561 67 NEYVEQAISLYKDIIASGVKHDGVTFVAIL---TPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSS 142 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~ 142 (156)
.++++.|+.+-+.-. ..|....-++| +.+...++.++|.--|..-. . +.| +...|.-|+.+
T Consensus 313 ~K~~~rAL~~~eK~I----~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq-~----------Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 313 EKKFERALNFVEKCI----DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQ-M----------LAPYRLEIYRGLFHS 377 (564)
T ss_pred hhhHHHHHHHHHHHh----ccCcccchHHHhccHHHHhccchHHHHHHHHHHH-h----------cchhhHHHHHHHHHH
Confidence 455555555554433 23333333333 34456788888888887662 2 343 78999999999
Q ss_pred HhhcCCHhHHhhhC
Q 041561 143 CQVHSNVRLAKKAA 156 (156)
Q Consensus 143 ~~~~g~~~~a~~~~ 156 (156)
|...|.+.+|.-.|
T Consensus 378 YLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 378 YLAQKRFKEANALA 391 (564)
T ss_pred HHhhchHHHHHHHH
Confidence 99999999997543
No 177
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.59 E-value=2.5 Score=30.96 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=64.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCC----CCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASG----VKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD 131 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p 131 (156)
.|+.-++.| +.|++.+|..-|....+.. +.||. +-+|-.++...|+.++|..+|..+.++++- ++..|
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~-----s~KAp 215 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPK-----SPKAP 215 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCC-----CCCCh
Confidence 488887766 5677999999999999864 34444 445789999999999999999999888762 23444
Q ss_pred ChhhHHHHHHHHhhcCCHhHHhh
Q 041561 132 DLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 132 d~~~~~~li~~~~~~g~~~~a~~ 154 (156)
|.-. -|-.+..+.|+.++|+.
T Consensus 216 dall--Klg~~~~~l~~~d~A~a 236 (262)
T COG1729 216 DALL--KLGVSLGRLGNTDEACA 236 (262)
T ss_pred HHHH--HHHHHHHHhcCHHHHHH
Confidence 4332 33345567788888875
No 178
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.59 E-value=6.2 Score=32.31 Aligned_cols=138 Identities=11% Similarity=0.019 Sum_probs=80.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc---------------chHHHH--HHHHHc--CCCH
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------VTWNEM--IHGYAE--NEYV 70 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---------------~~~~~l--i~~~~~--~g~~ 70 (156)
+=++-+...+++++|.+.-+.+...+ +-|...+..=+-+..+-+ .+++.. =.+||. .+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence 34556677888999999888887765 222222222222222222 233333 455554 5678
Q ss_pred HHHHHHHHHHHHCCCCccHH-HHHHHHHhhcCCCchHHHHHHHHhcccccccCCC-------c-------------CCCC
Q 041561 71 EQAISLYKDIIASGVKHDGV-TFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK-------C-------------LMPY 129 (156)
Q Consensus 71 ~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------c-------------~~~~ 129 (156)
|+|++.++ |..++.. +-..=-.-|-+.+++++|.++++.+ .+++.... | ..+.
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L-~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHL-AKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 88888776 3444433 4444445667899999999999999 44433322 2 4455
Q ss_pred CCChhhHHHHHH---HHhhcCCHhHHhhh
Q 041561 130 KDDLVVWGDLVS---SCQVHSNVRLAKKA 155 (156)
Q Consensus 130 ~pd~~~~~~li~---~~~~~g~~~~a~~~ 155 (156)
.| .-+|..+.+ .+...|++.+|.++
T Consensus 170 v~-e~syel~yN~Ac~~i~~gky~qA~el 197 (652)
T KOG2376|consen 170 VP-EDSYELLYNTACILIENGKYNQAIEL 197 (652)
T ss_pred CC-cchHHHHHHHHHHHHhcccHHHHHHH
Confidence 55 445555554 24567888888764
No 179
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=90.57 E-value=1.8 Score=27.18 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=26.1
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
.-|..|+.-|-.+|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 6799999999999999999999999987
No 180
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.55 E-value=8.3 Score=31.40 Aligned_cols=100 Identities=10% Similarity=0.064 Sum_probs=74.7
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC---c-----
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK---C----- 125 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---c----- 125 (156)
.+|-..|+.--+..-++.|..+|.+.++.+..+ +.+..++++.-+| .+|...|.++|+.=.+.+|-.|. |
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 677788888888888888888898888887777 7778888888775 45667788888765566665554 1
Q ss_pred -----------------CCCCCC--ChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 126 -----------------LMPYKD--DLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 126 -----------------~~~~~p--d~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.+.+.| ....|..||.--...|+..-+.++
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 222333 458899999999999999877665
No 181
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.29 E-value=1.8 Score=32.77 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=45.1
Q ss_pred cCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 66 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
-.-++++++.+...=..-|+-||.+|+..+++.+.+.+++.+|.++...|..+
T Consensus 112 lky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 112 LKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34577888888888888899999999999999999999999999887777544
No 182
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=90.02 E-value=5 Score=31.90 Aligned_cols=96 Identities=5% Similarity=-0.051 Sum_probs=70.3
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
|++-+....+.+.+.++.++|.+.++.+... .|+.. ..+-.+-.+|.+.|++.+|.++++.-..+
T Consensus 339 N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~-------------~l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 339 NPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSP-------------LLQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCcc-------------HHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 3444556667788999999999999998763 45532 34445567778899999999998887765
Q ss_pred CCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 84 GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 84 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
. .-|...|..+-++|...|+..++..-..+.
T Consensus 404 ~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 404 D-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred C-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 3 457778888889888888777766554444
No 183
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.67 E-value=0.99 Score=22.21 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=21.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
+++.|-..|...|++++|.+++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 567888889999999999999988754
No 184
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.64 E-value=3.1 Score=27.59 Aligned_cols=78 Identities=13% Similarity=0.045 Sum_probs=54.4
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 041561 16 AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 95 (156)
.+.|+.+.|.+.|+.+..+- +-...+-. .-=.|+.+|.+.+++++|...+++..+-...--.+-|...
T Consensus 21 l~~~~Y~~A~~~le~L~~ry-P~g~ya~q-----------AqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRY-PFGEYAEQ-----------AQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcC-CCCcccHH-----------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 46789999999999997642 11221112 2234788999999999999999999885443334667777
Q ss_pred HHhhcCCCch
Q 041561 96 LTPCSHSGLV 105 (156)
Q Consensus 96 l~~~~~~~~~ 105 (156)
+.+++.....
T Consensus 89 ~~gL~~~~~~ 98 (142)
T PF13512_consen 89 MRGLSYYEQD 98 (142)
T ss_pred HHHHHHHHHh
Confidence 7777755443
No 185
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=89.30 E-value=2.3 Score=35.47 Aligned_cols=61 Identities=11% Similarity=0.228 Sum_probs=46.3
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
..||.+-.+|.+.++-.+|...+.+-.+....|.. .|-..+-...+.|.+++|.+.+.++.
T Consensus 554 eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~-iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 554 EAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ-IWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe-eeechhhhhhhcccHHHHHHHHHHHH
Confidence 78899999999999999999988888876644443 34444445568888888888887774
No 186
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=89.26 E-value=1.3 Score=37.96 Aligned_cols=85 Identities=11% Similarity=0.062 Sum_probs=52.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHH
Q 041561 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140 (156)
Q Consensus 61 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li 140 (156)
=-+++.+|++.+|.++|.+.++... -+.-+|-.+-..|...|++..|.++|+...+.+. -+-+....+-|=
T Consensus 653 giVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~--------~~~~~~vl~~La 723 (1018)
T KOG2002|consen 653 GIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY--------KKNRSEVLHYLA 723 (1018)
T ss_pred hhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc--------ccCCHHHHHHHH
Confidence 3345566677777777777666543 1233455566666667777777777766655543 234556666666
Q ss_pred HHHhhcCCHhHHhh
Q 041561 141 SSCQVHSNVRLAKK 154 (156)
Q Consensus 141 ~~~~~~g~~~~a~~ 154 (156)
.++-..|++.+|.+
T Consensus 724 ra~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKE 737 (1018)
T ss_pred HHHHHhhhHHHHHH
Confidence 77777777777655
No 187
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.04 E-value=5.6 Score=31.93 Aligned_cols=113 Identities=9% Similarity=0.025 Sum_probs=72.5
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CCC--ccH
Q 041561 17 KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS-----GVK--HDG 89 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~--p~~ 89 (156)
|.+.+++++..|++.++. ++.-+ +.||-.-..+.-.+++++|.+.|+.-.+- ++. +..
T Consensus 440 r~~k~~~~m~~Fee~kkk-FP~~~--------------Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p 504 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK-FPNCP--------------EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP 504 (606)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCc--------------hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence 556667777777776543 22223 56677777778889999999999886541 222 222
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 90 VTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 90 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
...-+++-.- ..+++..|.+++..-.+- -......|.+|=+.-.+.|+.++|.++
T Consensus 505 lV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~----------Dpkce~A~~tlaq~~lQ~~~i~eAiel 559 (606)
T KOG0547|consen 505 LVHKALLVLQ-WKEDINQAENLLRKAIEL----------DPKCEQAYETLAQFELQRGKIDEAIEL 559 (606)
T ss_pred hhhhhHhhhc-hhhhHHHHHHHHHHHHcc----------CchHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2222222221 458899999998877221 123557788888888888998888764
No 188
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=89.03 E-value=1.4 Score=28.51 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=25.6
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
...|.+|..|++.. .++..+.+.. .++.+....+++-|.+.+-++++.-++..+
T Consensus 42 ~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 42 ALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred hHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 34555555555442 2233333331 123344444555555555555555555554
No 189
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.03 E-value=2.2 Score=35.73 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=57.6
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..|.-=+.+++..+++++.+++-+.++. ..-|.-.+.+|.+.|+.++|...+.... +..
T Consensus 716 r~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~---------------~l~ 774 (829)
T KOG2280|consen 716 RLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG---------------GLQ 774 (829)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC---------------ChH
Confidence 5677778888888888887776655442 4456667888889999999988887661 111
Q ss_pred hHHHHHHHHhhcCCHhHHhhhC
Q 041561 135 VWGDLVSSCQVHSNVRLAKKAA 156 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~~ 156 (156)
-.+.+|.+.|++.+|-++|
T Consensus 775 ---ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 775 ---EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ---HHHHHHHHhccHHHHHHHH
Confidence 4678899999999988765
No 190
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=88.80 E-value=2.1 Score=27.87 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhccccc
Q 041561 72 QAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDH 119 (156)
Q Consensus 72 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 119 (156)
+..+-+..+..-.+.|+.....+.++||-|.+|+..|.++|+..+.+.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~ 114 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC 114 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence 445556666666899999999999999999999999999999997663
No 191
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.58 E-value=3.6 Score=30.59 Aligned_cols=61 Identities=20% Similarity=0.140 Sum_probs=31.2
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHh-CCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKD-GYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYK 78 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 78 (156)
+..+..++|+.+++.+++....+.++..... +..-|. ..|..+|+.-..+|+..-..++.+
T Consensus 201 ~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~--------------rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 201 TRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDP--------------RPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred ChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCC--------------chHHHHHHHHHHcCCHHHHHHHhh
Confidence 3344444555555555555555555544322 333344 556666666666666655544443
No 192
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.25 E-value=7.4 Score=29.11 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHhHHH
Q 041561 21 LFLGRQILTRIVKDGYGNDIFVGSAPI 47 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~~~~~~~~~~li 47 (156)
++....+++.|.+.|++.+.++|-+-.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~ 104 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAAL 104 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHH
Confidence 566788888999999988887777643
No 193
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=87.77 E-value=13 Score=30.08 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=45.3
Q ss_pred CccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 86 KHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
..+...|.++--.....|++++|...+++.. + +.|+...|..+-..+...|++++|.+
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl-~----------L~ps~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAI-D----------LEMSWLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-H----------cCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3344566665444445799999999999883 3 57888899999999999999999875
No 194
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.73 E-value=5.5 Score=31.96 Aligned_cols=119 Identities=10% Similarity=0.110 Sum_probs=77.8
Q ss_pred CCCchHHHHHHHHHHHHhC---CCCchHHHhHHHHHhhhcc------------chHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041561 17 KLSSLFLGRQILTRIVKDG---YGNDIFVGSAPINIYCNCG------------VTWNEMIHGYAENEYVEQAISLYKDII 81 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~li~~~~~~~------------~~~~~li~~~~~~g~~~~a~~~~~~m~ 81 (156)
....+.++++++.+..+.| +..+... +...... ..=-.+-.+..+.|+.++|.+.|++|.
T Consensus 212 eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~-----~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLl 286 (539)
T PF04184_consen 212 EASTIVEAEELLRQAVKAGEASLGKSQFL-----QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLL 286 (539)
T ss_pred cccCHHHHHHHHHHHHHHHHHhhchhhhh-----hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3455788888888877654 2333211 1111111 111235566678899999999999997
Q ss_pred HCC-CCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCC
Q 041561 82 ASG-VKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSN 148 (156)
Q Consensus 82 ~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~ 148 (156)
+.- ..-+....-.+|.++-..+...++..++... .+... -+--...|++.+..+...|+
T Consensus 287 ke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY-dDi~l-------pkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 287 KEFPNLDNLNIRENLIEALLELQAYADVQALLAKY-DDISL-------PKSATICYTAALLKARAVGD 346 (539)
T ss_pred hhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh-ccccC-------CchHHHHHHHHHHHHHhhcc
Confidence 643 2234457788999999999999999999998 43210 12345678888777666665
No 195
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.55 E-value=1.2 Score=22.71 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=24.3
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 91 TFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 91 t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
++..+-+++.+.|++++|.++++...+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5667788999999999999999999654
No 196
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=87.33 E-value=7.2 Score=33.41 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=64.0
Q ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 8 FTTVLSSCA--KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 8 ~~~ll~~~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
|..++++++ |.|..++|..+++.....+.. |. .|...+-.+|...++.+++..+|++... .
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~--------------~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~ 106 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DD--------------LTLQFLQNVYRDLGKLDEAVHLYERANQ--K 106 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-ch--------------HHHHHHHHHHHHHhhhhHHHHHHHHHHh--h
Confidence 444444443 556666666555554332221 33 7788889999999999999999999765 4
Q ss_pred CccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 86 KHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
-|+..-...++.+|+|-+++.+-.+.=-+|
T Consensus 107 ~P~eell~~lFmayvR~~~yk~qQkaa~~L 136 (932)
T KOG2053|consen 107 YPSEELLYHLFMAYVREKSYKKQQKAALQL 136 (932)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888999999988887766555545
No 197
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.96 E-value=5.6 Score=24.88 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCccHHHHHHHHHh
Q 041561 20 SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFVAILTP 98 (156)
Q Consensus 20 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~ 98 (156)
|.-+..+-++.+....+.|++ ....+.+++|.+-+++.-|.++|+-.+.+ |.+ ...|..+++-
T Consensus 25 D~we~rrglN~l~~~DlVP~P--------------~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqE 88 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEP--------------KIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQE 88 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---H--------------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCh--------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHH
Confidence 444677777777777888888 66778889999999999999999998753 433 2277777654
No 198
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=86.79 E-value=10 Score=27.83 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=68.5
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHH----h-C-CCCchHHHhHHHHHhhhcc------chHHHHHHHHHcCCCHHHHHH
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVK----D-G-YGNDIFVGSAPINIYCNCG------VTWNEMIHGYAENEYVEQAIS 75 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~----~-g-~~~~~~~~~~li~~~~~~~------~~~~~li~~~~~~g~~~~a~~ 75 (156)
|.-.+..|...|+++.|-+.+..+-+ . | ..--...|..-+..|...+ ..+..+...+.+.|++++|.+
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45556666777777776666666533 1 1 1122345555556666555 667788899999999999999
Q ss_pred HHHHHHHCCC-----CccHH--HHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 76 LYKDIIASGV-----KHDGV--TFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 76 ~~~~m~~~g~-----~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
+|++....-. .++.. .+.++| .+...||+..|.+.++....
T Consensus 177 ~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 177 IYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHh
Confidence 9999876422 23332 234444 44457899999999998843
No 199
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=86.77 E-value=17 Score=30.22 Aligned_cols=89 Identities=11% Similarity=0.080 Sum_probs=61.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH-HHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV-TFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
++--++..|-+.|+++.|....+.-..+ .|+.+ -|..=-+.+.+.|++++|..++++-. +. -.||+.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~-el---------D~aDR~ 440 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ-EL---------DTADRA 440 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHH-hc---------cchhHH
Confidence 3445778888899999999988876542 44444 23333377788999999999998873 32 256665
Q ss_pred hHHHHHHHHhhcCCHhHHhhhC
Q 041561 135 VWGDLVSSCQVHSNVRLAKKAA 156 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~~ 156 (156)
.=.-=..-..+..+.++|.+++
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHH
Confidence 5545555566777888887763
No 200
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=86.70 E-value=14 Score=32.10 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=47.2
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccH--HHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDG--VTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
.+|=-+-++|-..|++++|...|.+-.+ ..||. ..+-.+-+.+.+.|+++.+...|+.+-+.
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 4466677788889999999999977554 34444 44556788889999999999999988544
No 201
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=86.66 E-value=20 Score=30.89 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=64.7
Q ss_pred HhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHcCCCHHHH
Q 041561 14 SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAENEYVEQA 73 (156)
Q Consensus 14 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~g~~~~a 73 (156)
.+++ |+.+.|..++.+.++-. +.+...|-+|=..|-+.| ..|-.+-.-..+.|.+++|
T Consensus 149 lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 3455 99999999999987642 356777888888888877 4455555555666666666
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 74 ISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 74 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
.-.|.+-.+....-....| -=...|-+.|+...|.+-|.++-
T Consensus 227 ~~cy~rAI~~~p~n~~~~~-ers~L~~~~G~~~~Am~~f~~l~ 268 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIY-ERSSLYQKTGDLKRAMETFLQLL 268 (895)
T ss_pred HHHHHHHHhcCCcchHHHH-HHHHHHHHhChHHHHHHHHHHHH
Confidence 6666666553322122222 22345557788888877777773
No 202
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=86.53 E-value=2.9 Score=35.79 Aligned_cols=103 Identities=12% Similarity=0.092 Sum_probs=68.4
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC-C--------C
Q 041561 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS-G--------V 85 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~ 85 (156)
|.-.|+++.|.+-...++.. ..|..|.+.|.+..++|-|.--+..|... | -
T Consensus 738 yvtiG~MD~AfksI~~IkS~--------------------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKSD--------------------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred EEEeccHHHHHHHHHHHhhh--------------------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 34557777777666666543 67888888888888888888877777642 2 2
Q ss_pred CccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhhC
Q 041561 86 KHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKAA 156 (156)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~~ 156 (156)
.|+...-...+-| ...|.+++|..++.+- +++. .|=.-|-..|++++|.+||
T Consensus 798 ~~~e~eakvAvLA-ieLgMlEeA~~lYr~c-kR~D-----------------LlNKlyQs~g~w~eA~eiA 849 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLA-IELGMLEEALILYRQC-KRYD-----------------LLNKLYQSQGMWSEAFEIA 849 (1416)
T ss_pred CCcchhhHHHHHH-HHHhhHHHHHHHHHHH-HHHH-----------------HHHHHHHhcccHHHHHHHH
Confidence 3433322222222 2678999999999887 4432 2445667788888888875
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=86.39 E-value=4.8 Score=31.88 Aligned_cols=68 Identities=7% Similarity=-0.131 Sum_probs=52.8
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
+...++.+=.+|.+.|++++|...|+...+. .||.... ..+|..+-.+|...|++++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA----------~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEA----------QAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHH----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4467788888999999999999999998774 4654100 024778888899999999999999988764
No 204
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=86.25 E-value=10 Score=27.32 Aligned_cols=72 Identities=11% Similarity=0.055 Sum_probs=41.8
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 041561 17 KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 96 (156)
+.|+.++|...|+.+...-..+ .....+. =.+..+|.+.+++++|...|++..+.-..-...-+...+
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~-----------l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPFG-PYSQQVQ-----------LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCCC-hHHHHHH-----------HHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 4566677777777765532111 1111111 235677788999999999999988754333333444445
Q ss_pred Hhhc
Q 041561 97 TPCS 100 (156)
Q Consensus 97 ~~~~ 100 (156)
.+.+
T Consensus 112 ~g~~ 115 (243)
T PRK10866 112 RGLT 115 (243)
T ss_pred HHHh
Confidence 5543
No 205
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.18 E-value=5.8 Score=29.51 Aligned_cols=77 Identities=8% Similarity=0.076 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHH-CCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCH
Q 041561 71 EQAISLYKDIIA-SGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNV 149 (156)
Q Consensus 71 ~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~ 149 (156)
.--.++.+-+.. .|-.++..+...+|+.++..+++.+-.++++.-....+ ..-|.+-|..+|..-..+|+.
T Consensus 183 ~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~--------~~~D~rpW~~FI~li~~sgD~ 254 (292)
T PF13929_consen 183 NALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSV--------PGNDPRPWAEFIKLIVESGDQ 254 (292)
T ss_pred hhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCC--------CCCCCchHHHHHHHHHHcCCH
Confidence 333444444443 35678888999999999999999999998887743322 356899999999999999999
Q ss_pred hHHhhh
Q 041561 150 RLAKKA 155 (156)
Q Consensus 150 ~~a~~~ 155 (156)
.-.+++
T Consensus 255 ~~~~ki 260 (292)
T PF13929_consen 255 EVMRKI 260 (292)
T ss_pred HHHHHH
Confidence 887765
No 206
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.93 E-value=12 Score=27.83 Aligned_cols=113 Identities=9% Similarity=-0.008 Sum_probs=73.0
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHH-hCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
|...|-.|=..|.+.|+.+.|...|....+ .|=.|+. +..+ ...+-.-..-.+-.++.++|+++..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~--~~g~-----------aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI--LLGL-----------AEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH--HHHH-----------HHHHHHhcCCcccHHHHHHHHHHHh
Confidence 567788888889999999999999988765 3333333 2222 2222222222245788999999987
Q ss_pred CCCCccHH-HHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHH
Q 041561 83 SGVKHDGV-TFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSS 142 (156)
Q Consensus 83 ~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~ 142 (156)
. .|+.. +-.-+--.+...|++.+|...++.|... -|....|..+|+.
T Consensus 222 ~--D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~-----------lp~~~~rr~~ie~ 269 (287)
T COG4235 222 L--DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL-----------LPADDPRRSLIER 269 (287)
T ss_pred c--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----------CCCCCchHHHHHH
Confidence 4 34444 4444446667899999999999999543 3445555555543
No 207
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=85.65 E-value=2.6 Score=22.24 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=32.5
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINI 49 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 49 (156)
|...++.+ -+.|-+++++.+++.|.+.|+.-+...+..+++.
T Consensus 5 TlGiL~~A-k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 5 TLGILLLA-KRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred hHHHHHHH-HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 44445544 5678888999999999999998888888777653
No 208
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.31 E-value=8.8 Score=27.03 Aligned_cols=77 Identities=10% Similarity=-0.060 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCH
Q 041561 70 VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNV 149 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~ 149 (156)
-++|.+.|-.+...+..-+...-.++-.-| -..|.+++.+++.....-.. .+-.+|+..+.+|.+.|.+.|++
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~------~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSN------PDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcC------CCCCCCHHHHHHHHHHHHHhcch
Confidence 366888888888887665555555555554 47788889888777644432 11267999999999999999999
Q ss_pred hHHh
Q 041561 150 RLAK 153 (156)
Q Consensus 150 ~~a~ 153 (156)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9884
No 209
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=85.20 E-value=11 Score=26.60 Aligned_cols=97 Identities=11% Similarity=0.047 Sum_probs=61.9
Q ss_pred CCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
|++.---.+-.+..+.|+..+|...|++-...-+.-|.. ..-.+-++....+++.++...++.+-+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a--------------~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA--------------MLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH--------------HHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 444444556677778888888888888876544555552 223344555667788888888877765
Q ss_pred C---CCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 83 S---GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 83 ~---g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
. +-.||.. -.+-+.+...|...+|+.-|+..
T Consensus 153 ~~pa~r~pd~~--Ll~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 153 YNPAFRSPDGH--LLFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred cCCccCCCCch--HHHHHHHHhcCCchhHHHHHHHH
Confidence 3 3344433 33456666677777777777766
No 210
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=85.08 E-value=4 Score=21.50 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=29.0
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHh
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTP 98 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 98 (156)
.-+.|.++++..++++|.++|+.-+...+..+++-
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 34677888999999999999999888888877754
No 211
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.39 E-value=13 Score=26.88 Aligned_cols=90 Identities=10% Similarity=-0.027 Sum_probs=63.2
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccH-HHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCCh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDG-VTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDL 133 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~ 133 (156)
.+|..+-..|-+.|+.+.|.+-|+.-... .|+. ...|..=--+|..|.+++|.+.|+.-..+... -. -.
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y-------~~-~s 139 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAY-------GE-PS 139 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCC-------CC-cc
Confidence 78899999999999999999999887652 2222 23444444567788999999999987554221 11 23
Q ss_pred hhHHHHHHHHhhcCCHhHHhh
Q 041561 134 VVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 134 ~~~~~li~~~~~~g~~~~a~~ 154 (156)
.||.-+--+..+.|+++.|++
T Consensus 140 ~t~eN~G~Cal~~gq~~~A~~ 160 (250)
T COG3063 140 DTLENLGLCALKAGQFDQAEE 160 (250)
T ss_pred hhhhhhHHHHhhcCCchhHHH
Confidence 566666677778888887765
No 212
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=84.16 E-value=4.7 Score=27.81 Aligned_cols=56 Identities=5% Similarity=-0.198 Sum_probs=42.9
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH-CCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 61 IHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 61 i~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
+.......+.+......+..++ -...|+..+|..++.++...|+.++|+++..++.
T Consensus 115 l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 115 LLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333466666665555555544 3578999999999999999999999999999984
No 213
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=84.11 E-value=1.2 Score=29.13 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=23.7
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 041561 17 KLSSLFLGRQILTRIVKDGYGNDIFVGSAPIN 48 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 48 (156)
..|+-..|-.+|..|.++|-+||. |+.|+.
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 346667799999999999999987 555554
No 214
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.96 E-value=7.9 Score=23.98 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=50.3
Q ss_pred chHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCccHHHHHHHHHh
Q 041561 20 SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTP 98 (156)
Q Consensus 20 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~ 98 (156)
|.-++.+-++.+....+.|++ ..-.+.+++|.+-+|+.-|.++|+-.+. .|. +...|..+++-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P--------------~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEP--------------KVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCc--------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHHH
Confidence 667788888898888899999 6667788999999999999999998874 343 44577777654
No 215
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=83.96 E-value=15 Score=30.51 Aligned_cols=98 Identities=5% Similarity=0.039 Sum_probs=73.2
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
.|+-.+...+-+.|+.+.|+...+....+ .|+.+ +.|-.=-+-+.+.|++++|...+++-++-.
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTli-------------Ely~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLI-------------ELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHH-------------HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 34556777788889999999999988765 34443 555555677889999999999999987643
Q ss_pred CccHHHHHHHHHhhcCCCchHHHHHHHHhcccccc
Q 041561 86 KHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHE 120 (156)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 120 (156)
.||.+.-.--.+-..++..+++|..+...+ .+.|
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skF-Tr~~ 469 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKF-TREG 469 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHh-hhcc
Confidence 556665555666666889999999998888 4443
No 216
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.94 E-value=16 Score=29.88 Aligned_cols=106 Identities=13% Similarity=0.047 Sum_probs=72.5
Q ss_pred hHHHHHHHHHH-HHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHh
Q 041561 21 LFLGRQILTRI-VKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD-GVTFVAILTP 98 (156)
Q Consensus 21 ~~~a~~~~~~m-~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~ 98 (156)
+.+..++|-++ .+.+-.+|+.+++.| =--|--.|.+++|.+-|+.... ++|+ ..+||-|=-.
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~L--------------GVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAt 473 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGL--------------GVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGAT 473 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhh--------------HHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHH
Confidence 44555666655 456644555333333 2234578899999999999876 4555 4589999999
Q ss_pred hcCCCchHHHHHHHHhcccccccCCCcCCCCCCCh-hh-HHHHHHHHhhcCCHhHHhh
Q 041561 99 CSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDL-VV-WGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 99 ~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~-~~-~~~li~~~~~~g~~~~a~~ 154 (156)
++...+-.+|..-+.+-. + ++|+- +. ||.= -+|...|.+++|.+
T Consensus 474 LAN~~~s~EAIsAY~rAL-q----------LqP~yVR~RyNlg-IS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 474 LANGNRSEEAISAYNRAL-Q----------LQPGYVRVRYNLG-ISCMNLGAYKEAVK 519 (579)
T ss_pred hcCCcccHHHHHHHHHHH-h----------cCCCeeeeehhhh-hhhhhhhhHHHHHH
Confidence 999999999999998773 3 45542 33 4443 45688888888864
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=83.77 E-value=7.4 Score=26.49 Aligned_cols=86 Identities=7% Similarity=-0.127 Sum_probs=57.6
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 041561 16 AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 95 (156)
-..|++++|+.+|..+...+.- |. .-|..|-.++-..+++++|...|...-.-+. -|...+--.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~--------------~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~a 111 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NP--------------DYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFT 111 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchH
Confidence 3678999999999998775431 22 3345566666778889999998887654321 122223333
Q ss_pred HHhhcCCCchHHHHHHHHhccc
Q 041561 96 LTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~m~~ 117 (156)
=..+...|+.+.|+..|.....
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 4555678999999999987743
No 218
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.67 E-value=16 Score=27.94 Aligned_cols=91 Identities=10% Similarity=-0.054 Sum_probs=64.6
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIAS---GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD 131 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p 131 (156)
.+-..++..-....+++.+...+-.++.+ -..|+...++. ++-|- .-+.+++.-+...= .++| +-|
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~-irlll-ky~pq~~i~~l~np-IqYG--------iF~ 133 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW-IRLLL-KYDPQKAIYTLVNP-IQYG--------IFP 133 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH-HHHHH-ccChHHHHHHHhCc-chhc--------ccc
Confidence 45556666666778899999988888754 24444443332 33322 23556777766655 6777 679
Q ss_pred ChhhHHHHHHHHhhcCCHhHHhhhC
Q 041561 132 DLVVWGDLVSSCQVHSNVRLAKKAA 156 (156)
Q Consensus 132 d~~~~~~li~~~~~~g~~~~a~~~~ 156 (156)
|-.+++.+|..+.+.+++.+|.+|+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vv 158 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVV 158 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHH
Confidence 9999999999999999999998774
No 219
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.29 E-value=13 Score=27.35 Aligned_cols=96 Identities=8% Similarity=0.075 Sum_probs=70.0
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhC----CCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDG----YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
-|+.-+.. .+.|++..|++.|...++.. +.||..-| |-.++...|+.++|-.+|..+.+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW----------------LGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW----------------LGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH----------------HHHHHHhcccchHHHHHHHHHHH
Confidence 36666665 46777999999999987743 33444221 56778899999999999999987
Q ss_pred C-CCCccH-HHHHHHHHhhcCCCchHHHHHHHHhccccc
Q 041561 83 S-GVKHDG-VTFVAILTPCSHSGLVYAEVEIFNSMEHDH 119 (156)
Q Consensus 83 ~-g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 119 (156)
. +-.|.. -+.--+-....+.|+-++|+..++++.+++
T Consensus 207 ~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 207 DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 4 323332 344455566679999999999999997774
No 220
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=82.63 E-value=1.6 Score=28.63 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHhh
Q 041561 68 EYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99 (156)
Q Consensus 68 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 99 (156)
|.-.+|..+|+.|.++|-.||. |+.|+..+
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446789999999999999985 77777664
No 221
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.62 E-value=5 Score=20.83 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=21.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 60 MIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 60 li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
+-.+|...|+.+.|.+++++....|-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 56788899999999999999886553
No 222
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.62 E-value=21 Score=28.93 Aligned_cols=75 Identities=11% Similarity=0.186 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhc
Q 041561 68 EYVEQAISLYKDIIASGVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVH 146 (156)
Q Consensus 68 g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~ 146 (156)
+++++|..-|++-+. +.| +.+.|..+--+.-|.+.++++...|++-+++ ++.-...||-.-+.+.-.
T Consensus 408 ~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk----------FP~~~Evy~~fAeiLtDq 475 (606)
T KOG0547|consen 408 QQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK----------FPNCPEVYNLFAEILTDQ 475 (606)
T ss_pred HHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCCchHHHHHHHHHhhH
Confidence 345566666655443 333 2335555555555777888888888888665 344566777777777777
Q ss_pred CCHhHHhh
Q 041561 147 SNVRLAKK 154 (156)
Q Consensus 147 g~~~~a~~ 154 (156)
+++++|.+
T Consensus 476 qqFd~A~k 483 (606)
T KOG0547|consen 476 QQFDKAVK 483 (606)
T ss_pred HhHHHHHH
Confidence 77777764
No 223
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=82.34 E-value=4.2 Score=30.43 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=36.8
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 97 (156)
.-||..|+.-.+.||+++|+++.+|-++-|..--..||-.-++
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 4589999999999999999999999999998877777755443
No 224
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.02 E-value=2.5 Score=18.90 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=12.1
Q ss_pred HHHHHHHcCCCHHHHHHHHH
Q 041561 59 EMIHGYAENEYVEQAISLYK 78 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~ 78 (156)
.+-.++...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455666666666666654
No 225
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.58 E-value=3.7 Score=21.32 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=21.9
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHhC
Q 041561 11 VLSSCAKLSSLFLGRQILTRIVKDG 35 (156)
Q Consensus 11 ll~~~~~~~~~~~a~~~~~~m~~~g 35 (156)
+-++|...|+.+.|+.++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5678999999999999999998654
No 226
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.54 E-value=16 Score=25.77 Aligned_cols=79 Identities=6% Similarity=-0.030 Sum_probs=57.0
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCCccHHH
Q 041561 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA---SGVKHDGVT 91 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t 91 (156)
.++.|| +.|.+.|-.+...|..-++...-. +..|--..+.+++..++.+..+ .+-.+|...
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~a---------------LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~ei 180 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYA---------------LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEI 180 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHH---------------HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 355565 677777777877776666643333 3344456788999998888765 244889999
Q ss_pred HHHHHHhhcCCCchHHHH
Q 041561 92 FVAILTPCSHSGLVYAEV 109 (156)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~ 109 (156)
+..|...+-+.++.+.|-
T Consensus 181 l~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 181 LKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHhcchhhhh
Confidence 999999999999988763
No 227
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.53 E-value=20 Score=26.88 Aligned_cols=75 Identities=9% Similarity=0.100 Sum_probs=46.9
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCCh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDL 133 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~ 133 (156)
+-|..=-.+|++.|..+.|++--+.-.. +-|+ ..+|..|=.+|...|++.+|.+-|..- -+ +.|+-
T Consensus 116 VyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~aykKa-Le----------ldP~N 182 (304)
T KOG0553|consen 116 VYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKA-LE----------LDPDN 182 (304)
T ss_pred hHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHHHHHhh-hc----------cCCCc
Confidence 5566666777777777777766555443 2333 236666777777777888777777655 22 46666
Q ss_pred hhHHHHHHH
Q 041561 134 VVWGDLVSS 142 (156)
Q Consensus 134 ~~~~~li~~ 142 (156)
.+|-.=|..
T Consensus 183 e~~K~nL~~ 191 (304)
T KOG0553|consen 183 ESYKSNLKI 191 (304)
T ss_pred HHHHHHHHH
Confidence 666554443
No 228
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.45 E-value=5 Score=27.68 Aligned_cols=47 Identities=9% Similarity=-0.118 Sum_probs=33.7
Q ss_pred CCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 101 HSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 101 ~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
...+.+......+...+-. ...|+..+|..++.++...|+.++|++.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l--------~~~P~~~~~~~~a~~l~~~G~~~eA~~~ 166 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLL--------RRRPDPNVYQRYALALALLGDPEEARQW 166 (193)
T ss_pred CCCCHHHHHHHHHHHHHHH--------HhCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555554444442221 1579999999999999999999999875
No 229
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=81.06 E-value=10 Score=30.37 Aligned_cols=87 Identities=14% Similarity=0.100 Sum_probs=64.9
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCCh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDL 133 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~ 133 (156)
..|...|+.--+..-++.|..+|-+..+.| +.++.+.+++++..++ .|+...|..+|+.=... -||.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-----------f~d~ 465 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-----------FPDS 465 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-----------CCCc
Confidence 678889999989888999999999999988 7899999999999886 46777899998854333 3444
Q ss_pred hhH-HHHHHHHhhcCCHhHHh
Q 041561 134 VVW-GDLVSSCQVHSNVRLAK 153 (156)
Q Consensus 134 ~~~-~~li~~~~~~g~~~~a~ 153 (156)
..| +-.+.-..+.++-+.|+
T Consensus 466 ~~y~~kyl~fLi~inde~nar 486 (660)
T COG5107 466 TLYKEKYLLFLIRINDEENAR 486 (660)
T ss_pred hHHHHHHHHHHHHhCcHHHHH
Confidence 443 34444445555555544
No 230
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.88 E-value=7.5 Score=26.65 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=47.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccH--HHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDG--VTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
..+..+-.-|++.|+.++|.+.|.++.+.-..|.. ..+-.+|+...-.++++.+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 56778888889999999999999998875444433 356677888888888888887776663
No 231
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=80.12 E-value=20 Score=25.91 Aligned_cols=133 Identities=13% Similarity=0.085 Sum_probs=82.7
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHhCC-CCchHHHhHHHHHhhh---c----------c-------------chHHHHHHH
Q 041561 11 VLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCN---C----------G-------------VTWNEMIHG 63 (156)
Q Consensus 11 ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~---~----------~-------------~~~~~li~~ 63 (156)
+..++-+.++.++|...++...+.-. .|+. -+...+.+.+. . . .++..+|+-
T Consensus 75 la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 75 LIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 44666889999999999999876532 3333 23333333321 0 0 456666666
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHH
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~ 143 (156)
|-.+.-.++|.+....++.. .-..-+ .+-+-|-+.|.+..|..=++.+.+++. +-.......-.|+.+|
T Consensus 154 yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp-------~t~~~~eal~~l~~ay 222 (243)
T PRK10866 154 YPNSQYTTDATKRLVFLKDR---LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYP-------DTQATRDALPLMENAY 222 (243)
T ss_pred CcCChhHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCC-------CCchHHHHHHHHHHHH
Confidence 66666666666555554321 001111 344557778888888888888866642 1223455666788999
Q ss_pred hhcCCHhHHhhh
Q 041561 144 QVHSNVRLAKKA 155 (156)
Q Consensus 144 ~~~g~~~~a~~~ 155 (156)
...|..++|.++
T Consensus 223 ~~lg~~~~a~~~ 234 (243)
T PRK10866 223 RQLQLNAQADKV 234 (243)
T ss_pred HHcCChHHHHHH
Confidence 999999999764
No 232
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.90 E-value=23 Score=26.47 Aligned_cols=66 Identities=9% Similarity=0.057 Sum_probs=48.1
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHE 120 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 120 (156)
..-+.++..+--.|.+.-...++.+..+....-+......+.+.-.+.||.+.|...|+..++..+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~ 243 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ 243 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 334556666666777777778888887766666777777777777788888888888887765554
No 233
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=78.88 E-value=2.9 Score=20.14 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=21.4
Q ss_pred CChhhHHHHHHHHhhcCCHhHHhh
Q 041561 131 DDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 131 pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
-|...|+-+=..|...|+.++|++
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhcC
Confidence 377899999999999999999974
No 234
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=78.52 E-value=45 Score=29.17 Aligned_cols=109 Identities=10% Similarity=0.063 Sum_probs=79.7
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-----chHHHHHHHHHcCCCHHHHHHHHHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----VTWNEMIHGYAENEYVEQAISLYKDI 80 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m 80 (156)
..+-++-.+|-+.|+.+++.++++++.+.. +-|+.+-|-+-..|+... ..+.-.+.-|...+++.++.++|.++
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 345567777888899999999999998876 457777777776666555 56667777788888999999999888
Q ss_pred HHCCC-------------------CccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 81 IASGV-------------------KHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 81 ~~~g~-------------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
..... .--..++-.+...|-...+++++..++...
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 76421 111223333446666778888888888887
No 235
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=78.41 E-value=20 Score=31.10 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=36.3
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHH-----------HHHC--------CCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKD-----------IIAS--------GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~-----------m~~~--------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
.||-.-..-+-.++|.+.|++.|+. +.+. .-..|...|...-.-+-..|+.|.|..++..-
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 5565555666667777777766654 2211 12345555665555556677887777777655
No 236
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.02 E-value=37 Score=27.85 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=84.1
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
....|=-.|--.|+++.|..-|+...+ ++|+-+ ..||-|=..++...+-++|.+-|++-++ +.
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~-------------~lWNRLGAtLAN~~~s~EAIsAY~rALq--Lq 494 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDY-------------LLWNRLGATLANGNRSEEAISAYNRALQ--LQ 494 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchH-------------HHHHHhhHHhcCCcccHHHHHHHHHHHh--cC
Confidence 333333334456778888888877765 456554 7888888888999999999999999876 44
Q ss_pred ccH--HHHHHHHHhhcCCCchHHHHHHHHhccc--ccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 87 HDG--VTFVAILTPCSHSGLVYAEVEIFNSMEH--DHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 87 p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
|+- +=||.-| +|...|.+++|...|-.... +.+-.. .-...++...|.+|=.++...++.|.+.++
T Consensus 495 P~yVR~RyNlgI-S~mNlG~ykEA~~hlL~AL~mq~ks~~~--~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 495 PGYVRVRYNLGI-SCMNLGAYKEAVKHLLEALSMQRKSRNH--NKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred CCeeeeehhhhh-hhhhhhhHHHHHHHHHHHHHhhhccccc--ccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 443 3455444 56899999998876544311 110000 000234567899888888888888865554
No 237
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=77.90 E-value=15 Score=30.01 Aligned_cols=81 Identities=11% Similarity=0.068 Sum_probs=51.2
Q ss_pred CCCchHHHHHHHHHHHH--hCCCCc----hHHHhHHHHHhhhcc--------------------chHHHHHHHHHcCCCH
Q 041561 17 KLSSLFLGRQILTRIVK--DGYGND----IFVGSAPINIYCNCG--------------------VTWNEMIHGYAENEYV 70 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~--~g~~~~----~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~g~~ 70 (156)
..+.+.+|...|..... ..+.+. ..+++.|=+.|-+.+ .+++++--.|...|.+
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL 505 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh
Confidence 34566777777766542 111122 233444545555555 6777777788888888
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHhh
Q 041561 71 EQAISLYKDIIASGVKHDGVTFVAILTPC 99 (156)
Q Consensus 71 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 99 (156)
+.|.+.|.+-. .+.||..+-+.+++.+
T Consensus 506 d~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 506 DKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 88888887754 4778887777777743
No 238
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=77.83 E-value=21 Score=24.85 Aligned_cols=94 Identities=11% Similarity=0.090 Sum_probs=52.4
Q ss_pred HhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHH
Q 041561 14 SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFV 93 (156)
Q Consensus 14 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 93 (156)
...+.|+..+|...|+.+...-. .+...= ...=.+..++-+.|++++|...|+++.+.-..-...-+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P-~s~~a~-----------~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYP-NSPYAP-----------QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-T-TSTTHH-----------HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCC-CChHHH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 34577999999999999976521 111111 122345777888899999999999987642222222233
Q ss_pred HHHHhhc-------------CCCchHHHHHHHHhccccc
Q 041561 94 AILTPCS-------------HSGLVYAEVEIFNSMEHDH 119 (156)
Q Consensus 94 ~ll~~~~-------------~~~~~~~a~~~~~~m~~~~ 119 (156)
..+.+.+ ..+...+|...|+.+..++
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y 120 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY 120 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC
Confidence 3333332 2234456677777775553
No 239
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=76.68 E-value=6.3 Score=18.36 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=21.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
.|..+-..|...|++++|.+.|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 567777888889999999999888765
No 240
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.28 E-value=48 Score=28.27 Aligned_cols=77 Identities=17% Similarity=0.028 Sum_probs=47.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHH
Q 041561 60 MIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDL 139 (156)
Q Consensus 60 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~l 139 (156)
-+.-+...|+-.+|.++-.+.+ .||...|-.=+.+++..+++++-+++=+.++. +.=|.-.
T Consensus 690 Tv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---------------PIGy~PF 750 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---------------PIGYLPF 750 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---------------CCCchhH
Confidence 3344444455555555544443 56666666666777777777666666555522 2334448
Q ss_pred HHHHhhcCCHhHHhhh
Q 041561 140 VSSCQVHSNVRLAKKA 155 (156)
Q Consensus 140 i~~~~~~g~~~~a~~~ 155 (156)
+.+|.+.|+.++|.+.
T Consensus 751 Ve~c~~~~n~~EA~KY 766 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKY 766 (829)
T ss_pred HHHHHhcccHHHHhhh
Confidence 8888888888888764
No 241
>PRK15331 chaperone protein SicA; Provisional
Probab=75.51 E-value=16 Score=24.86 Aligned_cols=79 Identities=6% Similarity=-0.002 Sum_probs=51.7
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhc-CCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHH
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS-HSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSS 142 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~ 142 (156)
+-..|++++|..+|+-+-.- .|...-|..=+.+|. ..+++++|.+.|..-- ... .-|.+.+=.+=..
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~-~l~---------~~dp~p~f~agqC 114 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF-TLL---------KNDYRPVFFTGQC 114 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcc---------cCCCCccchHHHH
Confidence 45689999999999998763 333444544455555 5889999999988652 211 1233333334467
Q ss_pred HhhcCCHhHHhh
Q 041561 143 CQVHSNVRLAKK 154 (156)
Q Consensus 143 ~~~~g~~~~a~~ 154 (156)
|...|+.+.|++
T Consensus 115 ~l~l~~~~~A~~ 126 (165)
T PRK15331 115 QLLMRKAAKARQ 126 (165)
T ss_pred HHHhCCHHHHHH
Confidence 777778777764
No 242
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=75.48 E-value=23 Score=24.23 Aligned_cols=101 Identities=8% Similarity=-0.061 Sum_probs=67.0
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH---C
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA---S 83 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~ 83 (156)
.+..+-..|.+.|+.+.|.+.+..+.+.-..+... | ..+=.+|......+++..+.....+... .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-----i-------d~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-----I-------DMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-----H-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 35567778899999999999999988764433331 1 4455678888888888888877777654 2
Q ss_pred CCCccHHHHHHHHHhhc--CCCchHHHHHHHHhccccc
Q 041561 84 GVKHDGVTFVAILTPCS--HSGLVYAEVEIFNSMEHDH 119 (156)
Q Consensus 84 g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~m~~~~ 119 (156)
|-.++...--....++. ..+++.+|-+.|-.....+
T Consensus 106 ~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 106 GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 22222222222333333 4789999999998875554
No 243
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=74.11 E-value=23 Score=23.54 Aligned_cols=65 Identities=15% Similarity=0.089 Sum_probs=41.1
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
-....+......|.-+...++..++.+.+ .+++ ...-.+-.+|.+.|+.+++.+++.+-=++|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p--------------~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINP--------------EFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-H--------------HHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCH--------------HHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34566777778888888888888887533 3444 22334567888888888888888887777754
No 244
>PRK04841 transcriptional regulator MalT; Provisional
Probab=73.82 E-value=58 Score=28.03 Aligned_cols=92 Identities=4% Similarity=-0.094 Sum_probs=54.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH----CCCC--c-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCC
Q 041561 58 NEMIHGYAENEYVEQAISLYKDIIA----SGVK--H-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYK 130 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~m~~----~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~ 130 (156)
..+-..+...|++++|.+.+++... .|.. | ....+..+-..+...|++++|...+........ ..+..
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~-----~~~~~ 609 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS-----NYQPQ 609 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh-----ccCch
Confidence 4455567778999999888877653 2211 1 223344444455667999999888877632210 00001
Q ss_pred CChhhHHHHHHHHhhcCCHhHHhh
Q 041561 131 DDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 131 pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
.....+..+-..+...|+.++|.+
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~ 633 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARR 633 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHH
Confidence 123344445567788899888865
No 245
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.17 E-value=4.7 Score=18.46 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=16.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHC
Q 041561 61 IHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 61 i~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
-.++.+.|+.++|.+.|+++.+.
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 34556677888888888877653
No 246
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.16 E-value=26 Score=23.75 Aligned_cols=53 Identities=11% Similarity=-0.024 Sum_probs=37.0
Q ss_pred HHcCCCHHHHHHHHHHHHHCC-CCccHHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 64 YAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
-.+.++.+++..+++.|..-. -.|...++-..+. .+.|++++|.++|+.+..+
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~--i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLH--IVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHH--HHhCCHHHHHHHHHHHhcc
Confidence 345778999999999987622 2333445544443 4789999999999998544
No 247
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.14 E-value=39 Score=27.30 Aligned_cols=73 Identities=7% Similarity=0.037 Sum_probs=48.8
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHH
Q 041561 17 KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVT 91 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 91 (156)
..|+++.|..++++....+ ....++..+...+.-.. ..+..++++....+....++.++++|.+.|..|..+.
T Consensus 212 S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 212 GDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred cCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 4588999999999876532 12234444444432222 4455666666666566789999999999998887664
No 248
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=72.75 E-value=6.8 Score=22.61 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=33.1
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCch
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 105 (156)
.-.++.+.+.+++++....|..|.......+..+.-+.|+.
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~ 52 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGEL 52 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34788899999999999999999998888888887666544
No 249
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.67 E-value=19 Score=27.02 Aligned_cols=77 Identities=14% Similarity=0.108 Sum_probs=54.8
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccHHHH-HHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-ChhhHHHHHHH
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDGVTF-VAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSS 142 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~ 142 (156)
.+.+++++|+..|.+-.+ +.|+.-+| -.=-.+|++.|..+.|.+=-+.-. . +-| -.++|..|=.+
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al-~----------iDp~yskay~RLG~A 158 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL-S----------IDPHYSKAYGRLGLA 158 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH-h----------cChHHHHHHHHHHHH
Confidence 356778888888888765 55555544 444578889998888876554431 1 222 45788999999
Q ss_pred HhhcCCHhHHhh
Q 041561 143 CQVHSNVRLAKK 154 (156)
Q Consensus 143 ~~~~g~~~~a~~ 154 (156)
|...|++++|.+
T Consensus 159 ~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 159 YLALGKYEEAIE 170 (304)
T ss_pred HHccCcHHHHHH
Confidence 999999999876
No 250
>PLN02789 farnesyltranstransferase
Probab=72.36 E-value=40 Score=25.53 Aligned_cols=107 Identities=7% Similarity=-0.074 Sum_probs=53.8
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCch-HHHhHHHHHhhhcc---------------------chHHHHHHHH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDI-FVGSAPINIYCNCG---------------------VTWNEMIHGY 64 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~---------------------~~~~~li~~~ 64 (156)
+++.+-..+...+..+.|..+.+.+.+. .|+. .+|+.-=..+.+-+ ..|+.--..+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 4556666667778888899998888763 2332 23322111111111 2344332233
Q ss_pred HcCCC--HHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 65 AENEY--VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 65 ~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
.+.|+ .+++.++++.+.+.. .-|...|+.---.+.+.|+++++.+.++++.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333 244555555555432 1234455555555555566666666666663
No 251
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=72.25 E-value=9.9 Score=23.70 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=38.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchH
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 106 (156)
.+++.+...+..-.|.++++.+.+.+..++..|.--.|+.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 356666666677788999999999888888888888888888888554
No 252
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.53 E-value=43 Score=25.55 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=73.3
Q ss_pred CCCchHHHHHHHHHHHH-hCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC----------
Q 041561 17 KLSSLFLGRQILTRIVK-DGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV---------- 85 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------- 85 (156)
+.|..+.|.+-|....+ +|+.|- ..||..+..| ++|+.+.|++...+..++|+
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpl---------------lAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm 219 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPL---------------LAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGM 219 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCch---------------hHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence 56777777777776644 556554 3455444443 45677777777777776663
Q ss_pred ---CccH---------------HHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC-------c---------------
Q 041561 86 ---KHDG---------------VTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK-------C--------------- 125 (156)
Q Consensus 86 ---~p~~---------------~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------c--------------- 125 (156)
.||. ..||.=..-+-+.++.+.|++-+..|.-+.....+ .
T Consensus 220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KL 299 (459)
T KOG4340|consen 220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKL 299 (459)
T ss_pred eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHH
Confidence 1221 12454444455777777777777777543332222 0
Q ss_pred -----CCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 126 -----LMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 126 -----~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
..|+ -..||.-++-.||++.-++.|-.|
T Consensus 300 qFLL~~nPf--P~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 300 QFLLQQNPF--PPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred HHHHhcCCC--ChHHHHHHHHHHhhhHHHhHHHHH
Confidence 2222 346888888899999888877543
No 253
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=71.52 E-value=9.1 Score=21.32 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=19.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
.+|.+|...|++++|.+..+++..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 578999999999999999888764
No 254
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.50 E-value=39 Score=25.02 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhc
Q 041561 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVH 146 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~ 146 (156)
.|+.++|.++++.+.+.. ..|.+++--=+-..-..|+--+|.+-+....+. +..|...|--+-..|...
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~----------F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK----------FMNDQEAWHELAEIYLSE 167 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----------hcCcHHHHHHHHHHHHhH
Confidence 566889999999998876 445555543222222223333444444444344 457999999999999999
Q ss_pred CCHhHHh
Q 041561 147 SNVRLAK 153 (156)
Q Consensus 147 g~~~~a~ 153 (156)
|++++|.
T Consensus 168 ~~f~kA~ 174 (289)
T KOG3060|consen 168 GDFEKAA 174 (289)
T ss_pred hHHHHHH
Confidence 9999884
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=71.08 E-value=37 Score=28.95 Aligned_cols=98 Identities=12% Similarity=0.143 Sum_probs=50.7
Q ss_pred CCchHHHHHHHHHHHHhC----CCCchHHHhHHHHHhhhcc----------------------chHHHHHHHHHcCCCHH
Q 041561 18 LSSLFLGRQILTRIVKDG----YGNDIFVGSAPINIYCNCG----------------------VTWNEMIHGYAENEYVE 71 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~~----------------------~~~~~li~~~~~~g~~~ 71 (156)
-|.+++|++++-+|-++. +.....-|-.+++.+-..| ..|......|..+|+.+
T Consensus 747 ~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e 826 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE 826 (1189)
T ss_pred hcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 366777777776664432 2233344555555555443 34555555666666544
Q ss_pred HHHH------HHHHHHH--CCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 72 QAIS------LYKDIIA--SGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 72 ~a~~------~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
.-.+ .|+++.. ..+.-|....-.+-+++.+.|.-++|.+.|-+.
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 3322 2333321 123333444555666666777777766666544
No 256
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=70.64 E-value=66 Score=27.33 Aligned_cols=142 Identities=12% Similarity=0.065 Sum_probs=77.9
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHH----HHhCCCCchHHHhHHHHHhhhcc-----------------------ch
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRI----VKDGYGNDIFVGSAPINIYCNCG-----------------------VT 56 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m----~~~g~~~~~~~~~~li~~~~~~~-----------------------~~ 56 (156)
+...|.+.-..=-.+|+.+.+.++.++- ...|+.-|...|-.=-..+-+.| .|
T Consensus 439 d~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~t 518 (913)
T KOG0495|consen 439 DREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKST 518 (913)
T ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhH
Confidence 3445555555555778888888887753 44676666555544333333333 56
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCC---------------------------------CCccHHHHHHHHHhhcCCC
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASG---------------------------------VKHDGVTFVAILTPCSHSG 103 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g---------------------------------~~p~~~t~~~ll~~~~~~~ 103 (156)
|+.--..|.+.+.++-+..+|....+-- +.-....|.-..+-.-..|
T Consensus 519 w~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 519 WLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred HhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcC
Confidence 6666666666666655555555433210 1112222333333333456
Q ss_pred chHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 104 ~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
|...|+.++++.-.- ..-+...|-+-+..-..+..+|+|+.+
T Consensus 599 dv~~ar~il~~af~~----------~pnseeiwlaavKle~en~e~eraR~l 640 (913)
T KOG0495|consen 599 DVPAARVILDQAFEA----------NPNSEEIWLAAVKLEFENDELERARDL 640 (913)
T ss_pred CcHHHHHHHHHHHHh----------CCCcHHHHHHHHHHhhccccHHHHHHH
Confidence 666666666655222 122566777777777777777777653
No 257
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=70.56 E-value=20 Score=27.20 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=47.6
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhh
Q 041561 74 ISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV 145 (156)
Q Consensus 74 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~ 145 (156)
.++|+.|++.+++|.-++|..+--.+++.=.+.+...+++.+.. |..=|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s--------------D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS--------------DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc--------------ChhhhHHHHHHHHH
Confidence 47899999999999999999999999999999999999998843 33336666666654
No 258
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=69.87 E-value=18 Score=25.24 Aligned_cols=66 Identities=6% Similarity=0.117 Sum_probs=44.1
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHH
Q 041561 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKD 79 (156)
Q Consensus 11 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 79 (156)
.+-.|.+.|.+++|.++++...+ .|+......-+....+.+..|..+|..++-.-..+...++++.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd~~h~~lqnFSy~~~~~ki~~~ve~ 182 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKDPAHPVLQNFSYSHFMQKMKSYVEL 182 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccccccHHHHhccHHHHHHHHHHHHHH
Confidence 45678999999999999999987 3666555666666777775666666655543333344444433
No 259
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=69.75 E-value=21 Score=21.28 Aligned_cols=40 Identities=25% Similarity=0.269 Sum_probs=31.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHH
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 108 (156)
+..-+.+++.++.+.+..+| ...|..+.+++-..|....|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG----~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRG----KQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcCchHHH
Confidence 45566899999999999888 67888899998877765544
No 260
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=69.45 E-value=7.7 Score=25.70 Aligned_cols=47 Identities=9% Similarity=0.109 Sum_probs=35.7
Q ss_pred hhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 98 PCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 98 ~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
+++..|+++.|.+.|.+-..- ..-....||-=-+++.-.|+.++|..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l----------~P~raSayNNRAQa~RLq~~~e~ALd 98 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL----------APERASAYNNRAQALRLQGDDEEALD 98 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh----------cccchHhhccHHHHHHHcCChHHHHH
Confidence 456789999999999877332 23356778888899999998888753
No 261
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=69.32 E-value=22 Score=21.42 Aligned_cols=44 Identities=25% Similarity=0.177 Sum_probs=38.9
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 75 SLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 75 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
++|+--...|+.-|...|.++++-+.-.=..+...+++..|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 88998889999999999999999987777888889999998544
No 262
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=69.06 E-value=30 Score=22.84 Aligned_cols=66 Identities=18% Similarity=0.151 Sum_probs=48.1
Q ss_pred HHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCc
Q 041561 25 RQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL 104 (156)
Q Consensus 25 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 104 (156)
..+.+.+.+.|++++.. =-.+++.+.+.++.-.|.++++++++.+..-+..|--..|+.+...|-
T Consensus 6 ~~~~~~lk~~glr~T~q---------------R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 6 EDAIERLKEAGLRLTPQ---------------RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHHcCCCcCHH---------------HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34556677888766552 245667777777778899999999998877777776667777777774
Q ss_pred h
Q 041561 105 V 105 (156)
Q Consensus 105 ~ 105 (156)
+
T Consensus 71 v 71 (145)
T COG0735 71 V 71 (145)
T ss_pred E
Confidence 3
No 263
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=69.05 E-value=30 Score=27.53 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=18.9
Q ss_pred cHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 88 DGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
+...|..|-+...+.|+++.|.+.|...
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 5556777776666777777777666655
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=68.54 E-value=92 Score=28.17 Aligned_cols=105 Identities=13% Similarity=0.173 Sum_probs=58.5
Q ss_pred HHHHHHHhcCCC--chHHHHHHHHH--HHHhC---CCCchHHHhHHHHHhhhcc---chHHHH-------------HHHH
Q 041561 8 FTTVLSSCAKLS--SLFLGRQILTR--IVKDG---YGNDIFVGSAPINIYCNCG---VTWNEM-------------IHGY 64 (156)
Q Consensus 8 ~~~ll~~~~~~~--~~~~a~~~~~~--m~~~g---~~~~~~~~~~li~~~~~~~---~~~~~l-------------i~~~ 64 (156)
|...+..+++.| -+++++.+.+. +-..+ ++||...+..+..+|+..= ..|+-. +.+|
T Consensus 896 y~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~ 975 (1265)
T KOG1920|consen 896 YEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAY 975 (1265)
T ss_pred HHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHH
Confidence 445555555555 34444444332 11112 4789999999988888664 444444 4445
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccHHH--HHHHHHhhcCCCchHHHHHHHHhc
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDGVT--FVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
-.+|++++|+.+-.+|.. .-|... --.|+.-+...++.-+|-++....
T Consensus 976 ~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 555555555555544432 222222 244666777777777777776655
No 265
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.13 E-value=34 Score=23.01 Aligned_cols=64 Identities=13% Similarity=0.181 Sum_probs=38.1
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhc--cchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041561 16 AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC--GVTWNEMIHGYAENEYVEQAISLYKDII 81 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 81 (156)
.+.|++.+|.++|+++.+.+.. ......|+..|-+. ...|...-......+...++..+.+.+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~~~~--~p~~kAL~A~CL~al~Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 55 IARGNYDEAARILRELLSSAGA--PPYGKALLALCLNAKGDAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHcCCHHHHHHHHHhhhccCCC--chHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 4778888888888888776532 22222333222222 2666666666666666666666666665
No 266
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=67.93 E-value=28 Score=26.48 Aligned_cols=75 Identities=9% Similarity=0.135 Sum_probs=41.1
Q ss_pred HHHHHHcCCCHHHHHHHH-HHHHHCCCCccHH----HHHHHHHhhcCCCchHH-HHHHHHhcccccccCCCcCCCCCCCh
Q 041561 60 MIHGYAENEYVEQAISLY-KDIIASGVKHDGV----TFVAILTPCSHSGLVYA-EVEIFNSMEHDHEVKPKCLMPYKDDL 133 (156)
Q Consensus 60 li~~~~~~g~~~~a~~~~-~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~-a~~~~~~m~~~~~~~~~c~~~~~pd~ 133 (156)
|..-..+..-+++..... ++|+++. -|+.. .|..++++--.+.+-+. |.+.+. -.
T Consensus 261 L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalr------------------hl 321 (412)
T KOG2297|consen 261 LQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALR------------------HL 321 (412)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH------------------HH
Confidence 444444444455555544 4455444 45544 46666666544422211 222222 35
Q ss_pred hhHHHHHHHHhhcCCHhHHh
Q 041561 134 VVWGDLVSSCQVHSNVRLAK 153 (156)
Q Consensus 134 ~~~~~li~~~~~~g~~~~a~ 153 (156)
.+|.-|+++++..|+.+.+.
T Consensus 322 K~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HhhhHHHHHHhcCChHHHHH
Confidence 56777999999999988654
No 267
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=66.70 E-value=28 Score=28.22 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=38.3
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCCh-hhHHHHHHHH
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDL-VVWGDLVSSC 143 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~-~~~~~li~~~ 143 (156)
+..|+++.|...|-+-..-... |.+.|..=..+++..|++++|.+==..- .+ +.||+ .-|+..=.+.
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~-~~----------l~p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKT-RR----------LNPDWAKGYSRKGAAL 80 (539)
T ss_pred cccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHH-Hh----------cCCchhhHHHHhHHHH
Confidence 4456666666666555443222 5555555555666666665554433322 11 23433 3455555555
Q ss_pred hhcCCHhHHh
Q 041561 144 QVHSNVRLAK 153 (156)
Q Consensus 144 ~~~g~~~~a~ 153 (156)
.-.|++++|+
T Consensus 81 ~~lg~~~eA~ 90 (539)
T KOG0548|consen 81 FGLGDYEEAI 90 (539)
T ss_pred HhcccHHHHH
Confidence 5555555554
No 268
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.69 E-value=52 Score=24.67 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH-HHHC-CCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhh
Q 041561 58 NEMIHGYAENEYVEQAISLYKD-IIAS-GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVV 135 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~-m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~ 135 (156)
-.-|.++++.++++++....-+ -..- .+.| ...---|--|++.+....+.++-..+....+ .-+..-
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~---------Nq~lp~ 155 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPS---------NQSLPE 155 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc---------cCCchh
Confidence 3458899999999988774332 2221 2222 3334445567899999988888888754432 123334
Q ss_pred HHHHHHHHh-----hcCCHhHHhhhC
Q 041561 136 WGDLVSSCQ-----VHSNVRLAKKAA 156 (156)
Q Consensus 136 ~~~li~~~~-----~~g~~~~a~~~~ 156 (156)
|.++..-|. =.|.+++|++++
T Consensus 156 y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 156 YGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHH
Confidence 777665554 469999998764
No 269
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=66.57 E-value=46 Score=24.00 Aligned_cols=92 Identities=10% Similarity=0.045 Sum_probs=49.9
Q ss_pred hCCCCch---HHHhHHHHHhhhccchHHHHHHHHHcCCC------------HHHHHHHHHHHHHCCCCccHHHHHHHHHh
Q 041561 34 DGYGNDI---FVGSAPINIYCNCGVTWNEMIHGYAENEY------------VEQAISLYKDIIASGVKHDGVTFVAILTP 98 (156)
Q Consensus 34 ~g~~~~~---~~~~~li~~~~~~~~~~~~li~~~~~~g~------------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 98 (156)
.+..|.. ..|+.++. ...++|+++|++-+. +.....-++.+......|+..-....|+|
T Consensus 114 ~~~i~~~~~~~lw~~~i~------~~~~~Lveg~s~vkKCs~eGRalM~lD~q~~~~~le~l~~~~~~p~~~~Ve~YIKA 187 (234)
T PF10474_consen 114 QGPIPPEVQNVLWDRLIF------FAFETLVEGYSRVKKCSNEGRALMQLDFQQLQNKLEKLSGIRPIPNREYVENYIKA 187 (234)
T ss_pred cCCCCHHHHHHHHHHHHH------HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 3434444 56666666 777888999988553 22222223333333456877777777888
Q ss_pred hcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhc
Q 041561 99 CSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVH 146 (156)
Q Consensus 99 ~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~ 146 (156)
|- +++ .+ +.++.++|. +-...--..|++.-+..
T Consensus 188 yY----l~e-~e-~~~W~~~h~---------eYs~~ql~~Lv~~~~~~ 220 (234)
T PF10474_consen 188 YY----LPE-EE-LEEWIRTHT---------EYSKKQLVGLVNCAAAS 220 (234)
T ss_pred Hc----CCH-HH-HHHHHHhCc---------ccCHHHHHHHHHHHHHh
Confidence 76 332 12 333434431 33455556666655544
No 270
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=66.10 E-value=2.1 Score=25.41 Aligned_cols=23 Identities=22% Similarity=0.101 Sum_probs=8.9
Q ss_pred HHhCCCCchHHHhHHHHHhhhcc
Q 041561 32 VKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 32 ~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
+|..+..+..+|.++|++|++.|
T Consensus 16 ~QYeLsk~~~vyRvFiNgYar~g 38 (88)
T PF11491_consen 16 KQYELSKNEAVYRVFINGYARNG 38 (88)
T ss_dssp HHHTTTTTTTB------TTSS--
T ss_pred HHHHhhcccceeeeeecccccce
Confidence 34555566666666666666665
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=66.07 E-value=47 Score=26.95 Aligned_cols=49 Identities=10% Similarity=0.167 Sum_probs=37.1
Q ss_pred hcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 99 CSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 99 ~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
+-+.|+.++|.+.|.+|.+++. ..-.......||+++...+.+.+++.+
T Consensus 269 arklGr~~EAIk~~rdLlke~p--------~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 269 ARKLGRLREAIKMFRDLLKEFP--------NLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred HHHhCChHHHHHHHHHHHhhCC--------ccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 3378999999999999966631 112334677799999999999988764
No 272
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=64.22 E-value=13 Score=16.97 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
|..+=..|...|++++|.+.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555677778888888888877654
No 273
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=64.10 E-value=43 Score=22.74 Aligned_cols=66 Identities=12% Similarity=-0.074 Sum_probs=44.8
Q ss_pred HHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCch
Q 041561 26 QILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105 (156)
Q Consensus 26 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 105 (156)
.+-+.+.+.|++++..- -.++..+....+.-.|.++++.+.+.+..++..|.--.|+.+.+.|-+
T Consensus 12 ~~~~~L~~~GlR~T~qR---------------~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 12 QAEKLCAQRNVRLTPQR---------------LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHcCCCCCHHH---------------HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34445677787666532 234445555556667899999999988888888877777777777744
Q ss_pred H
Q 041561 106 Y 106 (156)
Q Consensus 106 ~ 106 (156)
.
T Consensus 77 ~ 77 (169)
T PRK11639 77 H 77 (169)
T ss_pred E
Confidence 3
No 274
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=64.03 E-value=45 Score=28.30 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=48.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHC--CCCccHHHHHHHHHhhcCCCchHH------HHHHHHhcccccccCCCcCCCCC
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIAS--GVKHDGVTFVAILTPCSHSGLVYA------EVEIFNSMEHDHEVKPKCLMPYK 130 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~------a~~~~~~m~~~~~~~~~c~~~~~ 130 (156)
+|+.+|..+|++-.+.++++.+... |-+.=...||..|+...+.|.++. +.+++++-. +.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~------------ln 100 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR------------LN 100 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh------------cC
Confidence 7888888888888888888888653 434444567777888888775542 334444331 34
Q ss_pred CChhhHHHHHHHH
Q 041561 131 DDLVVWGDLVSSC 143 (156)
Q Consensus 131 pd~~~~~~li~~~ 143 (156)
-|..||..|+++-
T Consensus 101 ~d~~t~all~~~s 113 (1117)
T COG5108 101 GDSLTYALLCQAS 113 (1117)
T ss_pred CcchHHHHHHHhh
Confidence 5777777776653
No 275
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=63.95 E-value=88 Score=26.80 Aligned_cols=80 Identities=14% Similarity=0.291 Sum_probs=48.8
Q ss_pred CCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 041561 36 YGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95 (156)
Q Consensus 36 ~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 95 (156)
+..|+.+|..|.-+..++| +.|+.+-..|...|.-..|..+.++-......|+..+---+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 4566666766666666666 67788888888888877777777765443323544443333
Q ss_pred H-Hhhc-CCCchHHHHHHHHhc
Q 041561 96 L-TPCS-HSGLVYAEVEIFNSM 115 (156)
Q Consensus 96 l-~~~~-~~~~~~~a~~~~~~m 115 (156)
+ +-|. +.+..+++.+.-.+.
T Consensus 399 asklc~e~l~~~eegldYA~ka 420 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKA 420 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHH
Confidence 3 3333 566666666554444
No 276
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.79 E-value=30 Score=20.92 Aligned_cols=46 Identities=13% Similarity=0.013 Sum_probs=32.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHH
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEV 109 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 109 (156)
.+..+-...|+.++|.+++..+. +| ...|..+++++-..|.-+.|.
T Consensus 41 ~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 41 RIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 33333346688999999999988 65 446778888887777665554
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=63.71 E-value=14 Score=17.01 Aligned_cols=27 Identities=11% Similarity=0.247 Sum_probs=20.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
+|..+=..|...|+.++|.+.|++-.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355566677888888888888887654
No 278
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=63.26 E-value=41 Score=22.30 Aligned_cols=55 Identities=9% Similarity=0.043 Sum_probs=43.3
Q ss_pred HcCCCHHHHHHHHHHHHHCCC--CccHHHHHHHHHhhcCCCchHHHHHHHHhccccc
Q 041561 65 AENEYVEQAISLYKDIIASGV--KHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDH 119 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 119 (156)
.+.|++++|.+.|+.+..+-. .-....---++.++-+.+++++|...++.+.+.|
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 367899999999999987521 2223455568899999999999999999996654
No 279
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=62.82 E-value=61 Score=25.85 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=52.4
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc------------chHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 16 AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------VTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
.+.|+++.|.++-.+. .+...|..|=+...+.| .-|..|+--|...|+.+...++-+.-..+
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 3556666665554333 34556666655555555 55777777888888887777777666655
Q ss_pred CCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 84 GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 84 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
|- +|..+.++--.|+.++..+++..-
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 52 455555555668888888777655
No 280
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=62.48 E-value=80 Score=25.32 Aligned_cols=105 Identities=13% Similarity=0.055 Sum_probs=61.5
Q ss_pred HHHHHHHhcC----CCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-------------------------chHH
Q 041561 8 FTTVLSSCAK----LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------------------------VTWN 58 (156)
Q Consensus 8 ~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-------------------------~~~~ 58 (156)
|..++..+.. ..+.+.++++++.+.++ -|+...|.-.-.-+.+.. ..+-
T Consensus 232 y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~ 309 (468)
T PF10300_consen 232 YHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYF 309 (468)
T ss_pred HHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHH
Confidence 4444444433 34567777777777653 256555543332222221 2334
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhc--CCCch-------HHHHHHHHhcc
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS--HSGLV-------YAEVEIFNSME 116 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~-------~~a~~~~~~m~ 116 (156)
-+.-.+....++++|.+.|..+.+. ..+..++-..+.|++ ..++. ++|..+|.+..
T Consensus 310 El~w~~~~~~~w~~A~~~f~~L~~~--s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 310 ELAWCHMFQHDWEEAAEYFLRLLKE--SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHchHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 4556677788999999999999873 223333333344444 46666 88888888774
No 281
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=62.23 E-value=22 Score=22.10 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=30.1
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
.+++.+...+..-.|.++++.+.+.|...+..|--..|+.+.+.|
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 456666666777889999999988876666644444444444444
No 282
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.99 E-value=33 Score=20.75 Aligned_cols=69 Identities=9% Similarity=0.107 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhH
Q 041561 72 QAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRL 151 (156)
Q Consensus 72 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~ 151 (156)
++.++++.+.++|+- +.....-+-.+=-..|+.+.|++++..+. + ....|..++++....|.-+.
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r-------------g~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-Q-------------KEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-c-------------CCcHHHHHHHHHHHcCchhh
Confidence 356788888888844 33344444443346689999999999994 2 34568899999999998887
Q ss_pred Hhhh
Q 041561 152 AKKA 155 (156)
Q Consensus 152 a~~~ 155 (156)
|.++
T Consensus 85 A~el 88 (88)
T cd08819 85 AREL 88 (88)
T ss_pred hhcC
Confidence 7653
No 283
>PRK13342 recombination factor protein RarA; Reviewed
Probab=61.86 E-value=76 Score=24.85 Aligned_cols=84 Identities=7% Similarity=0.008 Sum_probs=52.0
Q ss_pred CCchHHHHHHHHHHHHhCCCCchHHHhHHHH----HhhhccchHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCCccHH
Q 041561 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPIN----IYCNCGVTWNEMIHGYAE---NEYVEQAISLYKDIIASGVKHDGV 90 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~----~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~ 90 (156)
.|++..+..+++.....+-..+......++. .|-+.+..+-.++.++.+ ..+++.++..+..|.+.|..|...
T Consensus 187 ~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i 266 (413)
T PRK13342 187 NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFI 266 (413)
T ss_pred CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 6888888888887755432223333223332 222333455556666665 478999999999999999888765
Q ss_pred HHHHHHHhhcC
Q 041561 91 TFVAILTPCSH 101 (156)
Q Consensus 91 t~~~ll~~~~~ 101 (156)
.=..++-++-.
T Consensus 267 ~rrl~~~a~ed 277 (413)
T PRK13342 267 ARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHh
Confidence 55545544333
No 284
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=61.26 E-value=54 Score=22.98 Aligned_cols=53 Identities=17% Similarity=-0.004 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHhCCCC--chHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 21 LFLGRQILTRIVKDGYGN--DIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
++.|..+|+.+.+.--.| -......+|. -..+..|.++|.+++|.++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik---------~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIK---------EQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHH---------HHHHHHHHhcCchHHHHHHHHHHhc
Confidence 577888888886643233 2222222332 4567789999999999999999876
No 285
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=60.06 E-value=24 Score=25.14 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=28.3
Q ss_pred HHhCCCCchHHHhHHHHHhhhcc---chHHHHHHHHHcCC
Q 041561 32 VKDGYGNDIFVGSAPINIYCNCG---VTWNEMIHGYAENE 68 (156)
Q Consensus 32 ~~~g~~~~~~~~~~li~~~~~~~---~~~~~li~~~~~~g 68 (156)
.+.|+..+..+++.|++-|++.+ ..|...|.+|....
T Consensus 151 ~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~ 190 (221)
T KOG0037|consen 151 TQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ 190 (221)
T ss_pred HHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHH
Confidence 33488888888888888888662 77888888888743
No 286
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=59.77 E-value=36 Score=20.50 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=28.9
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCch
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 105 (156)
+..-+.+++.++++.+...| ...|..+++++-..+..
T Consensus 45 ~~~t~~~k~~~Lld~L~~RG----~~AF~~F~~aL~~~~~~ 81 (90)
T cd08332 45 AKPTSFSQNVALLNLLPKRG----PRAFSAFCEALRETSQE 81 (90)
T ss_pred cCCCcHHHHHHHHHHHHHhC----hhHHHHHHHHHHhcChH
Confidence 34456899999999999888 67888999998665543
No 287
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=59.62 E-value=90 Score=25.00 Aligned_cols=58 Identities=9% Similarity=-0.050 Sum_probs=40.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
.-+.+-.-+.+.|..+++..+++.-.. ..||....+.+-+.+.....++++.+.|..-
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345566667777777777777776554 4677888887777777777777777666543
No 288
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=59.13 E-value=99 Score=26.53 Aligned_cols=57 Identities=11% Similarity=0.172 Sum_probs=43.9
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccc
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHE 120 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 120 (156)
|+..++++.|++..++..+-+-+-+...|..+.-.++-.+++.+|..+.+.-..++|
T Consensus 488 ~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 488 YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 456677888888888887765566777888777778888889999888877666655
No 289
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=58.85 E-value=70 Score=23.49 Aligned_cols=64 Identities=9% Similarity=0.059 Sum_probs=47.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCcc-HHHHHHHHHhhcCCCchHHHHHHHHhcccccc
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASG-VKHD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHE 120 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 120 (156)
.|+..+.. -+.|++++|.+.|+.+.... ..|- ..+---++.++-+.++.++|...+++....++
T Consensus 37 LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 37 LYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 34444443 36799999999999998652 2222 34555667788899999999999999977765
No 290
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=58.77 E-value=13 Score=23.40 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=35.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchH
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 106 (156)
.+++.+...+.+-.|.++++.|.+.|...+..|.---|+.+...|-+.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 455666666667778999999999888888888777788888777554
No 291
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=58.53 E-value=64 Score=22.92 Aligned_cols=88 Identities=10% Similarity=0.040 Sum_probs=61.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHH
Q 041561 58 NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG 137 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~ 137 (156)
-.|-.+..+.|+..+|...|++-...-+.-|....-.+-++....++.-.+...++.+.+-+. ..-.||.. -
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p------a~r~pd~~--L 164 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP------AFRSPDGH--L 164 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC------ccCCCCch--H
Confidence 346778889999999999999987655677888888888888889999999999998843221 00123332 2
Q ss_pred HHHHHHhhcCCHhHHh
Q 041561 138 DLVSSCQVHSNVRLAK 153 (156)
Q Consensus 138 ~li~~~~~~g~~~~a~ 153 (156)
.+-..++..|..+.|+
T Consensus 165 l~aR~laa~g~~a~Ae 180 (251)
T COG4700 165 LFARTLAAQGKYADAE 180 (251)
T ss_pred HHHHHHHhcCCchhHH
Confidence 2335666666666554
No 292
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=58.03 E-value=49 Score=21.44 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=38.5
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 63 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
-+...+.++-.=.+++.+.++++.-....+.-+=.-|.+-.++.+|.++|+.+
T Consensus 72 ~~~q~R~VRlvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 72 KYMQNRLVRLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred cccccchhhhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 34444456666677788888887766666666666666888999999999876
No 293
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=57.87 E-value=95 Score=25.37 Aligned_cols=76 Identities=12% Similarity=0.090 Sum_probs=47.9
Q ss_pred HhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccc-hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHH
Q 041561 14 SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV-TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF 92 (156)
Q Consensus 14 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 92 (156)
+....|.++++..+++++...|- +..+...+-....-... ..-.++.+ ...++..+++..++++.+.|..|..+..
T Consensus 207 a~~a~Gs~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~~~~~~~~~~-i~~~d~~~~~~~~~~l~~~G~~~~~~l~ 283 (515)
T COG2812 207 ARAAEGSLRDALSLLDQAIAFGE--GEITLESVRDMLGLTDIEKLLSLLEA-ILKGDAKEALRLINELIEEGKDPEAFLE 283 (515)
T ss_pred HHHcCCChhhHHHHHHHHHHccC--CcccHHHHHHHhCCCCHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 33466888999999999987753 33333333333322221 11122222 3468899999999999999988877653
No 294
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=57.53 E-value=99 Score=26.34 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=52.0
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHH--HHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILT--RIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~--~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
.-+++.=++|.+.++.+-.+-+.+ +++++|-.||...-..... |. .-|....+-|-++|.-..|+++|..|+.
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~A-y~---gKF~EAAklFk~~G~enRAlEmyTDlRM- 673 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFA-YQ---GKFHEAAKLFKRSGHENRALEMYTDLRM- 673 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHH-hh---hhHHHHHHHHHHcCchhhHHHHHHHHHH-
Confidence 345666778888888777666655 5677888888744333221 11 1233334445555555566666655542
Q ss_pred CCCccHHHHHHHHHhhcCCCchHHHHHHHHh
Q 041561 84 GVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114 (156)
Q Consensus 84 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 114 (156)
|- ..+-+...|+-++-+.+...
T Consensus 674 --------FD-~aQE~~~~g~~~eKKmL~RK 695 (1081)
T KOG1538|consen 674 --------FD-YAQEFLGSGDPKEKKMLIRK 695 (1081)
T ss_pred --------HH-HHHHHhhcCChHHHHHHHHH
Confidence 11 12334455555555555543
No 295
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.54 E-value=1.1e+02 Score=24.95 Aligned_cols=70 Identities=10% Similarity=0.126 Sum_probs=43.0
Q ss_pred CCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH
Q 041561 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV 90 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 90 (156)
.|++..|..++++....| ....+...+-..+.... ...-.++++... |+.+.+++++++|...|..|...
T Consensus 211 ~GslR~al~lLdq~ia~~--~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 211 NGSVRDALSLLDQSIAYG--NGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSNA 281 (509)
T ss_pred CCcHHHHHHHHHHHHhcC--CCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 477778888877766554 12223333333332222 334445555554 88999999999999999887533
No 296
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.30 E-value=48 Score=20.84 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=10.9
Q ss_pred HhhcCCCchHHHHHHHHhc
Q 041561 97 TPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~m 115 (156)
..+...|++++|.++.+.+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~ 65 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKL 65 (115)
T ss_pred HHHHccchHHHHHHhcCCC
Confidence 3445566666666665554
No 297
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=56.20 E-value=1.3e+02 Score=25.75 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=42.9
Q ss_pred CCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH
Q 041561 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV 90 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 90 (156)
.|++..+..+++++...|- ...+...+-....... ...-.|++++.. ++.+.+++++++|...|+.+...
T Consensus 211 ~GslRdAlnLLDqaia~g~--g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~~ 281 (709)
T PRK08691 211 AGSMRDALSLLDQAIALGS--GKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQEMAACAVGFDNA 281 (709)
T ss_pred CCCHHHHHHHHHHHHHhcC--CCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHHH
Confidence 4788888888887766541 1222222222222222 334455666555 78889999999999888766543
No 298
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=56.12 E-value=25 Score=21.69 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcC-CCchHHHHHHHHhc
Q 041561 58 NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH-SGLVYAEVEIFNSM 115 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~m 115 (156)
..+|..|...|+.++|.+-+.++.... .-..+.+..+-.++-+ ...-+....++..+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~-~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L 63 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS-QHHEVVKVILECALEEKKSYREYYSKLLSHL 63 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG-GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 455667777789999888888865432 2222333333333333 22333344555555
No 299
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.99 E-value=30 Score=22.24 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHCCCCccHH-HHHHHHHhhcCCCchHHHHHHHHh
Q 041561 72 QAISLYKDIIASGVKHDGV-TFVAILTPCSHSGLVYAEVEIFNS 114 (156)
Q Consensus 72 ~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~ 114 (156)
++.++|..|..+|+.-... -|...-.-+...|+.++|..+|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 8899999999988765554 566666777788999999999863
No 300
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=55.97 E-value=98 Score=24.31 Aligned_cols=21 Identities=10% Similarity=0.376 Sum_probs=16.7
Q ss_pred CCChhhHHHHHHHHhhcCCHh
Q 041561 130 KDDLVVWGDLVSSCQVHSNVR 150 (156)
Q Consensus 130 ~pd~~~~~~li~~~~~~g~~~ 150 (156)
.||+..|.++..+++.-|-+.
T Consensus 234 aPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 234 APNVLIWSAALASNASSAALY 254 (391)
T ss_pred CCCchHHHHHHHHcCCccccC
Confidence 689999999998888766443
No 301
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=55.92 E-value=1.1e+02 Score=24.80 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=37.2
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhCC----CCchHHHhHHHHHhhhcc
Q 041561 9 TTVLSSCAKLSSLFLGRQILTRIVKDGY----GNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 9 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~~ 54 (156)
+.....+...|++++++.+++.+...=+ ..|..+||.++-.++++=
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSY 181 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSY 181 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHH
Confidence 4567788899999999999999876544 489999999888887764
No 302
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=55.86 E-value=21 Score=17.18 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHH
Q 041561 69 YVEQAISLYKDIIASGVKHDGVTFVAI 95 (156)
Q Consensus 69 ~~~~a~~~~~~m~~~g~~p~~~t~~~l 95 (156)
.++.|..+|+..+. ++|+..+|...
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 47889999999887 46888887543
No 303
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.35 E-value=65 Score=24.27 Aligned_cols=20 Identities=5% Similarity=0.047 Sum_probs=13.8
Q ss_pred hcCCCchHHHHHHHHHHHHh
Q 041561 15 CAKLSSLFLGRQILTRIVKD 34 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~ 34 (156)
....|+..+|..+|....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~ 163 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA 163 (304)
T ss_pred hhhccchhhHHHHHHHHHHh
Confidence 35567777788877777553
No 304
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=53.17 E-value=1.6e+02 Score=25.76 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=39.7
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc
Q 041561 19 SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD 88 (156)
Q Consensus 19 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 88 (156)
|++..++.+++++.. +...+..++..+...+.... .....++++.. .++...++.+++++.+.|..|-
T Consensus 213 GdlR~Al~eLEKLia-~~~~~~IT~e~V~allg~~~~~~I~~lidAL~-~~D~a~al~~l~~Li~~G~dp~ 281 (824)
T PRK07764 213 GSVRDSLSVLDQLLA-GAGPEGVTYERAVALLGVTDSALIDEAVDALA-AGDGAALFGTVDRVIEAGHDPR 281 (824)
T ss_pred CCHHHHHHHHHHHHh-hcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 667777777777653 22233344444444333332 23334555555 4778888888888888877654
No 305
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.72 E-value=97 Score=23.29 Aligned_cols=78 Identities=10% Similarity=0.007 Sum_probs=43.2
Q ss_pred CchHHHhHHHHHhhhcc-chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHH-----hhcCCCchHHHHHH
Q 041561 38 NDIFVGSAPINIYCNCG-VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT-----PCSHSGLVYAEVEI 111 (156)
Q Consensus 38 ~~~~~~~~li~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~-----~~~~~~~~~~a~~~ 111 (156)
.+...++.+|.-+-... ..-..|.+.-.+.||.+.|...|+...+..-+.|..+++.++. -+.-+++.-.+...
T Consensus 195 iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~ 274 (366)
T KOG2796|consen 195 LSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRF 274 (366)
T ss_pred hhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHH
Confidence 34455555555221111 4445566666678888888888887765433445555554442 22234455555555
Q ss_pred HHhc
Q 041561 112 FNSM 115 (156)
Q Consensus 112 ~~~m 115 (156)
+++.
T Consensus 275 ~~~i 278 (366)
T KOG2796|consen 275 FTEI 278 (366)
T ss_pred Hhhc
Confidence 5555
No 306
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.10 E-value=49 Score=19.64 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=31.6
Q ss_pred cCCCHHHHHHHHHHHHHCCC-CccHH-HHHHHHHhhcCCCchHHHHHH
Q 041561 66 ENEYVEQAISLYKDIIASGV-KHDGV-TFVAILTPCSHSGLVYAEVEI 111 (156)
Q Consensus 66 ~~g~~~~a~~~~~~m~~~g~-~p~~~-t~~~ll~~~~~~~~~~~a~~~ 111 (156)
....-++|+..|....+.-. .|+.+ ++..++.+++..|+..+..+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567788888888766433 33433 677788888888888776653
No 307
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=52.01 E-value=99 Score=23.18 Aligned_cols=89 Identities=9% Similarity=0.032 Sum_probs=64.2
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCccHHHH-HHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTF-VAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD 132 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd 132 (156)
..|--|=..|...|+.+.|..-|++-.+ .|-.|+...- .-.+-.-+...+-.++.++|++.... .|+
T Consensus 157 egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~-----------D~~ 225 (287)
T COG4235 157 EGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL-----------DPA 225 (287)
T ss_pred hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-----------CCc
Confidence 8899999999999999999999998765 5666666542 22222223444667799999999543 455
Q ss_pred hhhHHHHH-HHHhhcCCHhHHhh
Q 041561 133 LVVWGDLV-SSCQVHSNVRLAKK 154 (156)
Q Consensus 133 ~~~~~~li-~~~~~~g~~~~a~~ 154 (156)
...-..++ .++...|++.+|..
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHH
Confidence 55544444 78888999998863
No 308
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=51.78 E-value=27 Score=19.76 Aligned_cols=50 Identities=10% Similarity=-0.055 Sum_probs=37.0
Q ss_pred CCCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhh
Q 041561 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCN 52 (156)
Q Consensus 2 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 52 (156)
.|+..-++-++...++..-++.+...++...+.|. -+..+|---++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 46677788999999999999999999999998886 345555555554444
No 309
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=51.51 E-value=59 Score=20.40 Aligned_cols=66 Identities=14% Similarity=0.192 Sum_probs=44.7
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc---------chHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041561 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------VTWNEMIHGYAENEYVEQAISLYKDII 81 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---------~~~~~li~~~~~~g~~~~a~~~~~~m~ 81 (156)
+++.|++++|++...+..+. +.---...+.||+.-+... ..=..||++........+..++|+++.
T Consensus 29 ~Ak~g~f~~A~~~i~eA~~~-l~eAH~~QT~Liq~eA~G~k~~~slllvHAQDHLMtt~~~~~l~ke~i~lyk~~~ 103 (105)
T COG1447 29 AAKEGDFEEAEELIQEANDA-LNEAHHVQTKLIQKEASGEKIEVSLLLVHAQDHLMTTITEKDLIKELIELYKKLN 103 (105)
T ss_pred HHHcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCccceeeeeeehhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999998887553 1222344566777766665 445667777777666777777777664
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=51.15 E-value=76 Score=21.56 Aligned_cols=20 Identities=5% Similarity=-0.062 Sum_probs=14.0
Q ss_pred cCCCchHHHHHHHHHHHHhC
Q 041561 16 AKLSSLFLGRQILTRIVKDG 35 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~g 35 (156)
.+.|++.+|.++|+++...+
T Consensus 55 i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHhCCHHHHHHHHHHHhccC
Confidence 46677777888877775543
No 311
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=51.07 E-value=61 Score=25.93 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=40.4
Q ss_pred HHHHHHHHHhCCCCchHHHhHHHHHhhhcc--chHHHHHHHHHcCCC---HHHHHHHHHH
Q 041561 25 RQILTRIVKDGYGNDIFVGSAPINIYCNCG--VTWNEMIHGYAENEY---VEQAISLYKD 79 (156)
Q Consensus 25 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--~~~~~li~~~~~~g~---~~~a~~~~~~ 79 (156)
-++|.++.+..+.||.+.+.-+...|++.= ..-..+.++|++.|+ ++-++-+|+.
T Consensus 459 p~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr~~lgIlkl 518 (586)
T KOG2223|consen 459 PKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFRTALGILKL 518 (586)
T ss_pred HHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHHHHHHHHHH
Confidence 356777788899999999999999999886 444556677777775 4555555544
No 312
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=50.97 E-value=55 Score=19.92 Aligned_cols=68 Identities=12% Similarity=-0.008 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCC
Q 041561 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102 (156)
Q Consensus 23 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 102 (156)
.+..+++.+.+.|+-... -.=...+..-..++|.++++....+| ...|..+++++ +.
T Consensus 24 ~v~~ilD~Ll~~~Vlt~e------------------e~e~I~~~~t~~~qAr~Lld~l~~KG----~~A~~~F~~~L-~e 80 (94)
T cd08329 24 SVLPILDSLLSANVITEQ------------------EYDVIKQKTQTPLQARELIDTVLVKG----NAAAEVFRNCL-KK 80 (94)
T ss_pred hhHHHHHHHHHcCCCCHH------------------HHHHHHcCCChHHHHHHHHHHHHhhh----HHHHHHHHHHH-Hh
Confidence 355677777777752222 11122234444689999999988887 67788888887 44
Q ss_pred CchHHHHHHHH
Q 041561 103 GLVYAEVEIFN 113 (156)
Q Consensus 103 ~~~~~a~~~~~ 113 (156)
.+...+..++.
T Consensus 81 ~~~~L~~~L~~ 91 (94)
T cd08329 81 NDPVLYRDLFV 91 (94)
T ss_pred cCHhHHHHHHh
Confidence 55555555554
No 313
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=50.93 E-value=64 Score=28.56 Aligned_cols=96 Identities=7% Similarity=-0.003 Sum_probs=63.1
Q ss_pred HhHHHHHhhhccchHHHHHHHHHcCCC---------HHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHH
Q 041561 43 GSAPINIYCNCGVTWNEMIHGYAENEY---------VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113 (156)
Q Consensus 43 ~~~li~~~~~~~~~~~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 113 (156)
-++||+++++.|.+++. +.++--+.+ .|...+.|.++.+-=-.-|..++..-.......|++..+..++.
T Consensus 1177 k~tli~AL~kKg~a~ak-~e~l~g~~e~daeee~s~ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~ 1255 (1304)
T KOG1114|consen 1177 KDTLIDALVKKGEAFAK-YEALKGHKEQDAEEELSKLDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALL 1255 (1304)
T ss_pred HHHHHHHHHHhhhHHhh-hhhhcccccccchhhhhhhhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHH
Confidence 46788888888866665 222222222 56677778777764335567777777777778899999998888
Q ss_pred hcccccccCCCcCCCCCCChhhHHHHHHHHhhcC
Q 041561 114 SMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHS 147 (156)
Q Consensus 114 ~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g 147 (156)
.+.++.+ -.++...|.-++..+...|
T Consensus 1256 kliee~~--------es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1256 KLIEENG--------ESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred HHHHhcc--------ccchhHHHHHHHHHHHHhC
Confidence 8877655 3555666655555555444
No 314
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=50.88 E-value=21 Score=14.98 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=19.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
.|..+-..+...+++++|...|++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 355566677777888888888876653
No 315
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=50.65 E-value=99 Score=22.74 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=54.3
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 041561 16 AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 95 (156)
.+.|++++|...|+.+.... +-++.+=.++ =.++-++-+.++.++|...+++....-......-|...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~-----------l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRH-PFSPYSEQAQ-----------LDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcC-CCCcccHHHH-----------HHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46788899999999886432 1122222222 23566778899999999999998875333333445555
Q ss_pred HHhhcCC-------CchHHHHHHHHhc
Q 041561 96 LTPCSHS-------GLVYAEVEIFNSM 115 (156)
Q Consensus 96 l~~~~~~-------~~~~~a~~~~~~m 115 (156)
|.++++. .|...+++-|..|
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f 139 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAF 139 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHH
Confidence 6666542 3444455555555
No 316
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=50.41 E-value=31 Score=27.46 Aligned_cols=43 Identities=16% Similarity=0.044 Sum_probs=38.5
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 74 ISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 74 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
-++|.++++..+.||.+.+-.+...|+++=-+|.|.++++...
T Consensus 459 p~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~ 501 (586)
T KOG2223|consen 459 PKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYC 501 (586)
T ss_pred HHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheee
Confidence 3577778888999999999999999999999999999998874
No 317
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=50.35 E-value=1.3e+02 Score=24.00 Aligned_cols=85 Identities=4% Similarity=-0.079 Sum_probs=59.8
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhC-CCCchHH--HhHHHHHhhhcc-----------------------chHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFV--GSAPINIYCNCG-----------------------VTWNE 59 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~--~~~li~~~~~~~-----------------------~~~~~ 59 (156)
..+...|...+..|+++.|.++.+.-++.. +.+|..- -..|+.+-+... ..--.
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~ 268 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVV 268 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHH
Confidence 456788999999999999999999876654 4566532 234444333322 11223
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCccHH
Q 041561 60 MIHGYAENEYVEQAISLYKDIIASGVKHDGV 90 (156)
Q Consensus 60 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 90 (156)
--.++.+.|++.++..+++.+=+...+|+..
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~ia 299 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDIA 299 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHHH
Confidence 4567889999999999999998877777653
No 318
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=50.30 E-value=1.1e+02 Score=23.26 Aligned_cols=76 Identities=5% Similarity=-0.027 Sum_probs=47.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhC-CCCchHHHhHHHHHhhhc-cchHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041561 9 TTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNC-GVTWNEMIHGYAENEYVEQAISLYKDIIASG 84 (156)
Q Consensus 9 ~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 84 (156)
-.+|+.|.+.|..++|.+++....+.. --|+..+...+..---.. ...-+.|+.-+...=.+..+++++.-+++-+
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~ml~~Li~~L~~~l~l~~~ik~v~~Lrrl~ 187 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQMLSQLINQLRTPLKLPACIKTVGYLRRLP 187 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhc
Confidence 368999999999999999999987644 236655555443322111 1344455555544445667777776666543
No 319
>PRK12356 glutaminase; Reviewed
Probab=50.28 E-value=99 Score=23.58 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=36.5
Q ss_pred HhCCCCchHHHhHHHHHhhhcc-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHH
Q 041561 33 KDGYGNDIFVGSAPINIYCNCG-----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFV 93 (156)
Q Consensus 33 ~~g~~~~~~~~~~li~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 93 (156)
+-|++|+-..||++++.-...| .+-++||.+-....+++...++++++-.+.+..|..+|.
T Consensus 91 ~VG~EPSG~~FNsi~~Le~~~g~P~NPmINAGAI~~~sll~g~~~~~~~~~il~~~~~~ag~~l~~de~v~~ 162 (319)
T PRK12356 91 KIGADPTGLPFNSVIAIELHGGKPLNPLVNAGAIATTSLVPGANSDERWQRILDGQQRFAGRELALSDEVYQ 162 (319)
T ss_pred HhCCCCCCCCcchHHHhhccCCCCCCccccHHHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCccCHHHHH
Confidence 3588999999999987655555 444455554222223445555555554445666666553
No 320
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=49.97 E-value=34 Score=22.75 Aligned_cols=43 Identities=7% Similarity=0.067 Sum_probs=31.8
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINI 49 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 49 (156)
.|...++.+ -+.|-.++.+.+.++|.+.|+..+...++-++..
T Consensus 111 GtlGvL~~a-k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 111 GTLGVLALA-KSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred ehhHHHHHH-HHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 344444444 4557788999999999999998888777776653
No 321
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=49.82 E-value=36 Score=19.92 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 20 SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 20 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
+.+.|.+++..++.. -+.++..||++-....+.++..+.++--=.-.|.+..+.+-|.+|.-
T Consensus 12 DtEmA~~mL~DLr~d-ekRsPQLYnAI~k~L~RHkF~iskl~pd~~~LG~L~~aL~ey~~~~g 73 (82)
T PF11123_consen 12 DTEMAQQMLADLRDD-EKRSPQLYNAIGKLLDRHKFQISKLQPDENILGELAAALEEYKKMVG 73 (82)
T ss_pred HHHHHHHHHHHhcch-hhcChHHHHHHHHHHHHccchhhhcCccHHHHHHHHHHHHHHHHHcC
Confidence 456677777776543 34677788888777777764444443333344556666666776653
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=49.58 E-value=94 Score=25.54 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=59.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH-HHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC--
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV-TFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-- 131 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-- 131 (156)
.....++.-|.+.+++++|..++..|.-+-.....+ ..+.+++.+-+..--++.+..++.....+- .|.+|
T Consensus 409 l~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~------ap~rpl~ 482 (545)
T PF11768_consen 409 LGLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFY------APTRPLS 482 (545)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhcc------CCCcCcc
Confidence 456678999999999999999999997654332232 456667777776544444444444322221 01122
Q ss_pred C----------hhhHHHHHHHHhhcCCHhHHhhhC
Q 041561 132 D----------LVVWGDLVSSCQVHSNVRLAKKAA 156 (156)
Q Consensus 132 d----------~~~~~~li~~~~~~g~~~~a~~~~ 156 (156)
| ...--.+.....+.+++++|..+|
T Consensus 483 ~~~~~ey~d~V~~~aRRfFhhLLR~~rfekAFlLA 517 (545)
T PF11768_consen 483 DATVLEYRDPVSDLARRFFHHLLRYQRFEKAFLLA 517 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1 112233456667889999998765
No 323
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=48.71 E-value=46 Score=23.59 Aligned_cols=58 Identities=5% Similarity=-0.004 Sum_probs=45.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCC--------------CCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 58 NEMIHGYAENEYVEQAISLYKDIIASG--------------VKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~m~~~g--------------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
-++|-.|-+.-++.++.++++.|.+-. ..|-....|....-+.++|.+|.|..++.+=
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 457778888888999999988886533 2444566888888999999999999999843
No 324
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=48.70 E-value=29 Score=21.77 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=30.1
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
.+++...+.+..-.|.++++.+.+.|...+..|-=.-|+.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 456666666667889999999998887777654444455555555
No 325
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.52 E-value=47 Score=21.96 Aligned_cols=46 Identities=11% Similarity=0.186 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 9 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
-.+++.+.+.++...|+.+++.+.+.|..-+..|-=.-++.+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3567777777777899999999998776554432222234444444
No 326
>PRK13808 adenylate kinase; Provisional
Probab=48.44 E-value=9.6 Score=29.05 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH
Q 041561 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV 90 (156)
Q Consensus 24 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 90 (156)
...+-+.|...++.||..+.+.+-+-..+......-+|++|-++ .+++..+...+...|+.||.+
T Consensus 46 g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~ILDGFPRt--~~QA~~L~~ll~~~gi~PDlV 110 (333)
T PRK13808 46 GLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGFILDGFPRT--VPQAEALDALLKDKQLKLDAV 110 (333)
T ss_pred hHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCEEEeCCCCC--HHHHHHHHHHHHhcCCCcCeE
Confidence 44444555556678888666666544433322222345554443 567777766677777777654
No 327
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.36 E-value=26 Score=15.48 Aligned_cols=29 Identities=10% Similarity=0.021 Sum_probs=19.8
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 041561 19 SSLFLGRQILTRIVKDGYGNDIFVGSAPIN 48 (156)
Q Consensus 19 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 48 (156)
|+.+.+..+|+.+.+.- +-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 56788999999987653 245666655543
No 328
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.54 E-value=74 Score=20.41 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHH
Q 041561 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKD 79 (156)
Q Consensus 23 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 79 (156)
.+..+|..|...|+..... .-|..--..+-..|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A-------------~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLA-------------LFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBH-------------HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHH-------------HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5666777776666543332 3455555666788999999999874
No 329
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=47.54 E-value=1.4e+02 Score=23.72 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=41.8
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc---------------------------------chHHH
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------------------------VTWNE 59 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---------------------------------~~~~~ 59 (156)
.-+..+|+++.|.+++++ +-|+.-=...-..+++.|..+. ..++.
T Consensus 126 adhvAAGsFetAm~LLnr--QiGivnF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l~~ 203 (422)
T PF06957_consen 126 ADHVAAGSFETAMQLLNR--QIGIVNFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIPLSLSS 203 (422)
T ss_dssp HHHHHCT-HHHHHHHHHH--HC-B---GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB----HHH
T ss_pred HHHHHhCCHHHHHHHHHH--HhCccccHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCcCcCCHHH
Confidence 345678999999998875 4555444455567788887776 23344
Q ss_pred HHH----H--HHcCCCHHHHHHHHHHHHH
Q 041561 60 MIH----G--YAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 60 li~----~--~~~~g~~~~a~~~~~~m~~ 82 (156)
|.. + +...|.+.+|.+.|+....
T Consensus 204 L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~ 232 (422)
T PF06957_consen 204 LEERLKEGYKLFTAGKFEEAIEIFRSILH 232 (422)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333 2 3458889999999988764
No 330
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=47.08 E-value=1.7e+02 Score=26.32 Aligned_cols=60 Identities=8% Similarity=0.168 Sum_probs=41.8
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhh--cCCCchHHHHHHHHhccc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC--SHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~m~~ 117 (156)
..|..+..+|.++|+..-|.++|..... +.|+. +|.....+- +..|...++.+.++....
T Consensus 597 n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 597 NLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6799999999999999999999977554 44543 333333332 357777777777766543
No 331
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=46.26 E-value=42 Score=22.78 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=28.7
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
.++..+....+.-.|.+|++.+.+.|...+..|--.-|+.+.+.|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 455555556667789999999988886666644333444444444
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=46.19 E-value=44 Score=24.26 Aligned_cols=49 Identities=10% Similarity=-0.060 Sum_probs=24.0
Q ss_pred HHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-ChhhHHHHHHHHhhcCCHhHHh
Q 041561 94 AILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSSCQVHSNVRLAK 153 (156)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~~~~~g~~~~a~ 153 (156)
..++.+.+.+.++++.....+-.+. +| |.-+=..+++-++..|++++|.
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVka-----------kPtda~~RhflfqLlcvaGdw~kAl 55 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKA-----------KPTDAGGRHFLFQLLCVAGDWEKAL 55 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc-----------CCccccchhHHHHHHhhcchHHHHH
Confidence 3344444555555555554444222 22 3333444556666666666553
No 333
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=46.15 E-value=98 Score=21.43 Aligned_cols=134 Identities=12% Similarity=-0.005 Sum_probs=79.7
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhC-CCCchHHHhHHHHHhhh---c------c----------chHHHHHHHHHcCC
Q 041561 9 TTVLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCN---C------G----------VTWNEMIHGYAENE 68 (156)
Q Consensus 9 ~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~---~------~----------~~~~~li~~~~~~g 68 (156)
-.+..++-+.|+.+.|...++.+.+.- -.|.. -+...+.+.+. . . ..|..+|.-|-.+.
T Consensus 46 l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 46 LMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 345667788899999999999986642 22221 12222222221 0 0 56777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCC
Q 041561 69 YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSN 148 (156)
Q Consensus 69 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~ 148 (156)
..++|.+....+...= -..- -.+-+-|.+.|.+..|..-++.+.+++. +-.......-.|+.+|-+.|.
T Consensus 125 y~~~A~~~l~~l~~~l---a~~e-~~ia~~Y~~~~~y~aA~~r~~~v~~~yp-------~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 125 YAEEAKKRLAELRNRL---AEHE-LYIARFYYKRGKYKAAIIRFQYVIENYP-------DTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp THHHHHHHHHHHHHHH---HHHH-HHHHHHHHCTT-HHHHHHHHHHHHHHST-------TSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHcccHHHHHHHHHHHHHHCC-------CCchHHHHHHHHHHHHHHhCC
Confidence 7777766666554310 0111 1245668899999999999998866632 011123456788999999999
Q ss_pred HhHHhh
Q 041561 149 VRLAKK 154 (156)
Q Consensus 149 ~~~a~~ 154 (156)
.+.|.+
T Consensus 194 ~~~a~~ 199 (203)
T PF13525_consen 194 KQAADT 199 (203)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 986654
No 334
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.58 E-value=1.7e+02 Score=25.13 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=46.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhC--CCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHH------HHHHHHHHHH
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDG--YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVE------QAISLYKDII 81 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~m~ 81 (156)
+++.+|...|++-.+.++++.+..+. =+-=. ..+|.-|+.+.++|.++ .+-++++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l--------------~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq--- 95 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILL--------------PMINLYIREIIQRGSFELTDVLSNAKELLQ--- 95 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeeh--------------hHHHHHHHHHHhcCCccHHHHHHHHHHHHH---
Confidence 78999999999999999999886542 22222 34455555666666432 2222222
Q ss_pred HCCCCccHHHHHHHHHhhcC
Q 041561 82 ASGVKHDGVTFVAILTPCSH 101 (156)
Q Consensus 82 ~~g~~p~~~t~~~ll~~~~~ 101 (156)
..-+.-|..||..|+.+-..
T Consensus 96 ~a~ln~d~~t~all~~~sln 115 (1117)
T COG5108 96 QARLNGDSLTYALLCQASLN 115 (1117)
T ss_pred HhhcCCcchHHHHHHHhhcC
Confidence 23356677777777766544
No 335
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=45.35 E-value=33 Score=19.28 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHCC-CCccH
Q 041561 67 NEYVEQAISLYKDIIASG-VKHDG 89 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g-~~p~~ 89 (156)
.=+++.|...|.+++..| +.|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 348999999999999865 44443
No 336
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=45.29 E-value=63 Score=20.61 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=40.0
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc---------chHHHHHHHHHcCCCHHHHHHHHHHH
Q 041561 16 AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------VTWNEMIHGYAENEYVEQAISLYKDI 80 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---------~~~~~li~~~~~~g~~~~a~~~~~~m 80 (156)
++.|++++|++++++..+. +.---...+.||..-+..+ +.=..||.+..-....++..++|+++
T Consensus 42 Ak~gdfe~A~~~l~eA~e~-l~~AH~~qt~Liq~Ea~Ge~~~~slLlvHAQDhLMta~~~~~La~e~I~lyk~~ 114 (115)
T PRK10454 42 AKQGDFAAAKAMMDQSRMA-LNEAHLVQTKLIEGDQGEGKMKVSLVLVHAQDHLMTSMLARELITELIELHEKL 114 (115)
T ss_pred HHhCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCcceeeehHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6889999999999887664 1122334456666666554 44455666666655566666666553
No 337
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=45.10 E-value=1.4e+02 Score=23.02 Aligned_cols=110 Identities=9% Similarity=0.037 Sum_probs=71.9
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHH---hCCCCchHHH-hHHHHHhhhcc----------chHHHHHHHHHcCCCHHH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVK---DGYGNDIFVG-SAPINIYCNCG----------VTWNEMIHGYAENEYVEQ 72 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~~~~~~~-~~li~~~~~~~----------~~~~~li~~~~~~g~~~~ 72 (156)
|+--+-..+.+.|+.+.|..+.++..- +.+.|.-..+ ..+-.+-++-. .+--.-|....++|.++-
T Consensus 42 tLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rT 121 (360)
T PF04910_consen 42 TLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRT 121 (360)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHH
Confidence 344455566788888888888877532 1111111000 00011111111 233346788899999999
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHhhc-CCCchHHHHHHHHhcc
Q 041561 73 AISLYKDIIASGVKHDGVTFVAILTPCS-HSGLVYAEVEIFNSME 116 (156)
Q Consensus 73 a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~m~ 116 (156)
|+++-+-+..-...-|...--.+|+.|+ ++++.+--.++.+...
T Consensus 122 AlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 122 ALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 9999999988666668888888999999 8999988888888764
No 338
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=44.90 E-value=31 Score=22.02 Aligned_cols=27 Identities=15% Similarity=0.121 Sum_probs=23.6
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCC
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDGY 36 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g~ 36 (156)
++|..+.++...++|+.+.+.|.++|-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 567778889999999999999999883
No 339
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=44.69 E-value=1.5e+02 Score=23.29 Aligned_cols=96 Identities=10% Similarity=-0.005 Sum_probs=60.8
Q ss_pred HhcCCCchHHHHHHHHHHHHh-----CCCCc-hHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 041561 14 SCAKLSSLFLGRQILTRIVKD-----GYGND-IFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKH 87 (156)
Q Consensus 14 ~~~~~~~~~~a~~~~~~m~~~-----g~~~~-~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 87 (156)
.+.+.|++..|...|+..... +..+. ......+.. ..++.|..+|.+.+++.+|++.=..-...+ .+
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~------~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~ 289 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKL------ACHLNLAACYLKLKEYKEAIESCNKVLELD-PN 289 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHH------HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CC
Confidence 455677888888887775442 12111 011111111 567788888889999998888777766543 33
Q ss_pred cHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 88 DGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
|....--==.+|...|+++.|+..|+.+.
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 44443333467778889999999999884
No 340
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=43.59 E-value=55 Score=24.13 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=31.1
Q ss_pred CCCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchH
Q 041561 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIF 41 (156)
Q Consensus 2 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 41 (156)
.|++.....++..|.+ +++++|.+++.++-+.|+.|...
T Consensus 236 ~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHHH
Confidence 3666667777877654 56899999999999999988663
No 341
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=43.34 E-value=52 Score=17.44 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=16.0
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccH
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDG 89 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~ 89 (156)
-..|--++++++--++.+.|+.|..
T Consensus 15 LntgLd~etL~ici~L~e~GVnPea 39 (48)
T PF12554_consen 15 LNTGLDRETLSICIELCENGVNPEA 39 (48)
T ss_pred HcCCCCHHHHHHHHHHHHCCCCHHH
Confidence 3456666667777777777766654
No 342
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=43.05 E-value=38 Score=21.82 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 041561 67 NEYVEQAISLYKDIIASGVKHDGVTFVA 94 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 94 (156)
.|+.+.+.++++.++..|+.|-...|..
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~L 37 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWAL 37 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHHH
Confidence 6889999999999999999999887754
No 343
>KOG3719 consensus Carnitine O-acyltransferase CPT2/YAT1 [Lipid transport and metabolism]
Probab=42.99 E-value=1.4e+02 Score=24.62 Aligned_cols=70 Identities=21% Similarity=0.215 Sum_probs=48.8
Q ss_pred HHHhCCCCchHHHhHH-HHHhhhcc---chHHHHHHHHHcCCCHH------HHHHHHHHHHHCCCCccHHHHHHHHHhhc
Q 041561 31 IVKDGYGNDIFVGSAP-INIYCNCG---VTWNEMIHGYAENEYVE------QAISLYKDIIASGVKHDGVTFVAILTPCS 100 (156)
Q Consensus 31 m~~~g~~~~~~~~~~l-i~~~~~~~---~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 100 (156)
.++.|+.||..+--++ |..|+..| .+|.....+-.++|+-+ .|.+.|-+..-..-.++..-.-.||+.|+
T Consensus 436 ~K~~klsPDs~vQlafQ~A~~alYg~~v~~yEscsT~aFk~gRTe~ir~~t~atk~~~~a~l~~s~~~a~kl~~li~~Cs 515 (638)
T KOG3719|consen 436 IKKLKLSPDSVVQLAFQMAYYALYGRFVFTYESCSTAAFKNGRTETIRSATQATKEFCEAFLSSSIDSAGKLQQLIDTCS 515 (638)
T ss_pred HHhhCCCcHHHHHHHHHHHHHHHhcccccccchhhHHHHhcCchhhhhhHHHHHHHHHHHHhcccccchhHHHHHHHHHH
Confidence 4557999999988887 55555666 78888888888888854 34444444443344566667777888887
No 344
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=42.85 E-value=72 Score=18.95 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=35.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHH
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEV 109 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 109 (156)
....+.......|..+.|..+++.+. .| .--|..+++|+-..|.-+.|.
T Consensus 34 d~e~I~a~~~~~G~~~aa~~Ll~~L~-r~----~~Wf~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 34 DKERIQAAENNSGNIKAAWTLLDTLV-RR----DNWLEPFLDALRECGLGHLAR 82 (84)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh-cc----CChHHHHHHHHHHcCCHHHHH
Confidence 34556666667899999999999998 33 335677788888777665554
No 345
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.59 E-value=98 Score=20.40 Aligned_cols=60 Identities=7% Similarity=0.003 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 041561 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97 (156)
Q Consensus 23 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 97 (156)
+..+.++.+....+.|++ ..-..-+.++.+-+|+.-|.++|+-.+.+ ..+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~p--------------kvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSP--------------KVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCCh--------------HHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 344445555555566666 55567788999999999999999998753 2222334555543
No 346
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.33 E-value=55 Score=19.61 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=22.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIASG 84 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~g 84 (156)
++++-+.++.-.++|+++.+-|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 34777788888999999999999987
No 347
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=42.31 E-value=2.6e+02 Score=25.23 Aligned_cols=88 Identities=16% Similarity=0.032 Sum_probs=40.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CccHHHHHHHHHhhc--CCCchHHHHHHHHhcccccccCCCcCCCCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGV-KHDGVTFVAILTPCS--HSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD 131 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p 131 (156)
..+..+.+.|++...+++|+.+. +..... ..-.-.+|..-.+.. ..++..++..-|+.-.+- -+.
T Consensus 527 eaaaa~adtyae~~~we~a~~I~--l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~----------dPk 594 (1238)
T KOG1127|consen 527 EAAAASADTYAEESTWEEAFEIC--LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT----------DPK 594 (1238)
T ss_pred hhHHHHHHHhhccccHHHHHHHH--HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC----------Cch
Confidence 45555666666666666666651 111111 111122333333322 334444444444433110 123
Q ss_pred ChhhHHHHHHHHhhcCCHhHHhh
Q 041561 132 DLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 132 d~~~~~~li~~~~~~g~~~~a~~ 154 (156)
|...|..+-++|.+.|++.-|.+
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlK 617 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALK 617 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHH
Confidence 55566666666666666665554
No 348
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.98 E-value=1.4e+02 Score=22.16 Aligned_cols=109 Identities=13% Similarity=0.130 Sum_probs=73.2
Q ss_pred CCchHHHHHHHHHHHH---hC-CCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHH--
Q 041561 18 LSSLFLGRQILTRIVK---DG-YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVT-- 91 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~---~g-~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-- 91 (156)
..+.++..++++++.. +| ..+|.. ..|..++-+..-.|+.+.|...++.+...= |.+.=
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w-------------~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~ 89 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIW-------------TLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVG 89 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHH-------------HHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHH
Confidence 3566777777777753 34 344442 445666777778899999999999987653 33332
Q ss_pred --HHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 92 --FVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 92 --~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
...++. -.|+.++|.++++.+..+ -+.|.++|-.=|...-..|..-+|.+
T Consensus 90 ~lkam~lE---a~~~~~~A~e~y~~lL~d----------dpt~~v~~KRKlAilka~GK~l~aIk 141 (289)
T KOG3060|consen 90 KLKAMLLE---ATGNYKEAIEYYESLLED----------DPTDTVIRKRKLAILKAQGKNLEAIK 141 (289)
T ss_pred HHHHHHHH---HhhchhhHHHHHHHHhcc----------CcchhHHHHHHHHHHHHcCCcHHHHH
Confidence 222333 368999999999999666 24577888777777666776666554
No 349
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=41.86 E-value=73 Score=18.72 Aligned_cols=41 Identities=7% Similarity=0.002 Sum_probs=33.0
Q ss_pred chHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 104 ~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
-.+.+.+++.....+.| ...|...|+.++...|+-+-+.++
T Consensus 43 ~~eq~~~mL~~W~~r~g-----------~~at~~~L~~AL~~i~r~Di~~~~ 83 (84)
T cd08317 43 LAQQAQAMLKLWLEREG-----------KKATGNSLEKALKKIGRDDIVEKC 83 (84)
T ss_pred HHHHHHHHHHHHHHhcC-----------CcchHHHHHHHHHHcChHHHHHHh
Confidence 34788889888866533 468899999999999999988765
No 350
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.93 E-value=34 Score=28.08 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhCCCCchHHHhH
Q 041561 24 GRQILTRIVKDGYGNDIFVGSA 45 (156)
Q Consensus 24 a~~~~~~m~~~g~~~~~~~~~~ 45 (156)
-..+++.+...|++||..||++
T Consensus 252 e~~IleDl~~LgIkpd~~TyTS 273 (712)
T KOG1147|consen 252 EDVILEDLSLLGIKPDRVTYTS 273 (712)
T ss_pred HHHHHHHHHHhCcCcceeeech
Confidence 4456777788899999988774
No 351
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=40.84 E-value=67 Score=22.00 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=34.2
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 75 SLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 75 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
+++..+.+.|+.|..+.+..++..+++.=..+.+.++++.+
T Consensus 150 ~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD~l 190 (214)
T PF00566_consen 150 ELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWDFL 190 (214)
T ss_dssp HHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHHHH
Confidence 46666777899999999999999999988999999999955
No 352
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=40.82 E-value=86 Score=19.25 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCC-CchHHHHHHHHhc
Q 041561 58 NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS-GLVYAEVEIFNSM 115 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~m 115 (156)
..+|..|...++.++|.+-+.++......++ +....+..++-+. ..-+....++..+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~-vv~~~i~~~le~~~~~~~~~~~Ll~~L 63 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQHHE-VVKVLLTCALEEKRTYREMYSVLLSRL 63 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcchHH-HHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 4567788888999999999988865433222 2222333333232 2334444555555
No 353
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=40.74 E-value=37 Score=19.90 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=24.2
Q ss_pred CCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCch
Q 041561 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDI 40 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 40 (156)
|+.....-+++.|.+ ++++++......+...|+.++.
T Consensus 3 p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~~ 39 (89)
T PF08542_consen 3 PPPEVIEEILESCLN-GDFKEARKKLYELLVEGYSASD 39 (89)
T ss_dssp --HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HHH
T ss_pred CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHHH
Confidence 444455566666654 4899999999999887887765
No 354
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=40.70 E-value=1.4e+02 Score=21.68 Aligned_cols=132 Identities=13% Similarity=0.083 Sum_probs=72.3
Q ss_pred CCcccHHHHHHHhcCCCchHHHHHHHHHHHH----hCCCCchHHHhHHHHHhhhcc-chHHHHHHHHHcCCCHHHHHHHH
Q 041561 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVK----DGYGNDIFVGSAPINIYCNCG-VTWNEMIHGYAENEYVEQAISLY 77 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~----~g~~~~~~~~~~li~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~ 77 (156)
|-...-..++...-+....++...+++.+.. .|..++...-+.++++++..| .+++.+..+.-+. .+.+
T Consensus 9 P~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~GSkS~SH~~~~lery------~~~L 82 (253)
T PF09090_consen 9 PFHALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIGSKSFSHVLSALERY------KEVL 82 (253)
T ss_dssp TTHHHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHTTTSHHHHHHHHHHT------HHHH
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhcCchHHHHHHHHHHH------HHHH
Confidence 3334445566666666666777777776654 234567889999999999998 7888777777664 2333
Q ss_pred HHHHHCCCCccHHHHHHHHHhhcC--CCchHHHHHHHHhcccccccCCC------c---C--CCCCCChhhHHHHHHHHh
Q 041561 78 KDIIASGVKHDGVTFVAILTPCSH--SGLVYAEVEIFNSMEHDHEVKPK------C---L--MPYKDDLVVWGDLVSSCQ 144 (156)
Q Consensus 78 ~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~~~------c---~--~~~~pd~~~~~~li~~~~ 144 (156)
+.+ + .++...=..+|++..+ ..+...+.-+.+.| .++++... + . ...--+..+|..+-.+..
T Consensus 83 k~l---~-~~~~~~q~~il~~v~~~W~~~~q~~~li~dkl-l~~~ii~~~~Vv~w~f~~~~~~~~~~~~~~wE~l~~tl~ 157 (253)
T PF09090_consen 83 KEL---E-AESEEAQFWILDAVFRFWKNNPQMGFLIIDKL-LNYGIISPSAVVNWVFSPENGNQELTRSYVWEILNRTLR 157 (253)
T ss_dssp HHH-----TSSHHHHHHHHHHHHHHHTT-HHHHHHHHHHH-HHTTSS-HHHHHHHHTSGGG-TTTTTSHHHHHHHHHHHH
T ss_pred HHh---c-cCChHHHHHHHHHHHHHHhcCCceehHHHHHH-HhcCCCCHHHHHHHHcCccccccchhhchHHHHHHHHHH
Confidence 333 1 2222333334444442 55666667777777 44444333 1 1 123356777887777766
Q ss_pred h
Q 041561 145 V 145 (156)
Q Consensus 145 ~ 145 (156)
+
T Consensus 158 k 158 (253)
T PF09090_consen 158 K 158 (253)
T ss_dssp H
T ss_pred H
Confidence 4
No 355
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=40.57 E-value=1.3e+02 Score=24.06 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=39.2
Q ss_pred HHcCCCHHHHHHHHHHHHH---CCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 64 YAENEYVEQAISLYKDIIA---SGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
..+.|.+..|.+.|.+-.. +.+.|+...|-..-....+.|++++|..--+.-
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 4567888889998888765 356777777777777778889998887765544
No 356
>PRK09462 fur ferric uptake regulator; Provisional
Probab=40.53 E-value=68 Score=21.06 Aligned_cols=47 Identities=23% Similarity=0.306 Sum_probs=34.3
Q ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCch
Q 041561 59 EMIHGYAEN-EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105 (156)
Q Consensus 59 ~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 105 (156)
.++..+... +..-.|.++++.+.+.+...+..|.--.|+.+...|-+
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345555554 45667899999999888777888877777887777754
No 357
>TIGR03814 Gln_ase glutaminase A. This family describes the enzyme glutaminase, from a larger family that includes serine-dependent beta-lactamases and penicillin-binding proteins. Many bacteria have two isozymes. This model is based on selected known glutaminases and their homologs within prokaryotes, with the exclusion of highly-derived (long branch) and architecturally varied homologs, so as to achieve conservative assignments. A sharp drop in scores occurs below 250, and cutoffs are set accordingly. The enzyme converts glutamine to glutamate, with the release of ammonia. Members tend to be described as glutaminase A (glsA), where B (glsB) is unknown and may not be homologous (as in Rhizobium etli). Some species have two isozymes that may both be designated A (GlsA1 and GlsA2).
Probab=40.44 E-value=1.6e+02 Score=22.26 Aligned_cols=61 Identities=10% Similarity=0.138 Sum_probs=34.9
Q ss_pred HhCCCCchHHHhHHHHHhhhcc-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCccHHHHH
Q 041561 33 KDGYGNDIFVGSAPINIYCNCG-----------VTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTFV 93 (156)
Q Consensus 33 ~~g~~~~~~~~~~li~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~ 93 (156)
+-|.+|+-..||++++.=...| .+-++||.+-....+++...++++++-.+ .+..|..+|.
T Consensus 79 ~VG~ePSG~~FNsi~~Le~~~g~P~NPmINAGAI~~~sll~~~~~~~~~~~il~~~~~~ag~~~l~~d~~v~~ 151 (300)
T TIGR03814 79 RVGVEPSGDPFNSIVQLELEPGKPRNPFINAGAIAVTSLLPGRTSEEKLERILEFVRKLAGNRSISIDEEVAQ 151 (300)
T ss_pred HhCCCCCCCCccchhhhhccCCCCCCccccHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhCCCCCccCHHHHH
Confidence 3578899999999975433345 44444554322223345555666665544 4555655543
No 358
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=40.36 E-value=8.8 Score=30.74 Aligned_cols=89 Identities=12% Similarity=0.204 Sum_probs=49.5
Q ss_pred HHHHhhhcc--chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHH---HHHhhcCCCchHHHHHHHHhcccccc
Q 041561 46 PINIYCNCG--VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVA---ILTPCSHSGLVYAEVEIFNSMEHDHE 120 (156)
Q Consensus 46 li~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a~~~~~~m~~~~~ 120 (156)
+...+.+++ ..|+.|..++.++-.+.+ ..+=.+|...|-.-+.++... -.++- +.+-.++.++-.+-.-+.
T Consensus 480 v~e~ctk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~im~~Gkht~~~~--cknkr~gkQlASQ~ilq~- 555 (650)
T KOG4334|consen 480 VVEMCTKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVIMILGKHTEEAE--CKNKRQGKQLASQRILQK- 555 (650)
T ss_pred HHHHhhhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeEeeeccceeeee--eechhHHHHHHHHHHHHH-
Confidence 456666776 789999999888766542 233445555554444443311 01122 223334444322221110
Q ss_pred cCCCcCCCCCCChhhHHHHHHHHhhc
Q 041561 121 VKPKCLMPYKDDLVVWGDLVSSCQVH 146 (156)
Q Consensus 121 ~~~~c~~~~~pd~~~~~~li~~~~~~ 146 (156)
+.|-..||.+++..|.+.
T Consensus 556 --------lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 556 --------LHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred --------hCHHhhhHHHHHHHhhhh
Confidence 478899999999888876
No 359
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=40.35 E-value=1.3e+02 Score=26.60 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=32.1
Q ss_pred HHHhHHHHHhh-hcc--chHHHHHHHHHcCC--CHHHHHHHHHHHHHC
Q 041561 41 FVGSAPINIYC-NCG--VTWNEMIHGYAENE--YVEQAISLYKDIIAS 83 (156)
Q Consensus 41 ~~~~~li~~~~-~~~--~~~~~li~~~~~~g--~~~~a~~~~~~m~~~ 83 (156)
.++.++..+.- ... .-...+|.+|++.+ ++++|+.+..++++.
T Consensus 796 ~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 796 KICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34555555554 221 56788999999999 899999999999876
No 360
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.16 E-value=69 Score=20.72 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCCCccHHH-HHHHHHhhcCCCchHHHHHHHH
Q 041561 72 QAISLYKDIIASGVKHDGVT-FVAILTPCSHSGLVYAEVEIFN 113 (156)
Q Consensus 72 ~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~ 113 (156)
+..++|..|..+|+.-.... |...-.-+-..|+..+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35778999999988766654 4444455557899999999886
No 361
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=39.04 E-value=81 Score=21.05 Aligned_cols=42 Identities=12% Similarity=0.217 Sum_probs=30.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHh
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTP 98 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 98 (156)
|-..++.+. +.|...+...+.++|.++|+..+...|+-+++-
T Consensus 112 tlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 112 TLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred hhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 344444443 456777778899999988988888888877654
No 362
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=38.84 E-value=1.2e+02 Score=20.41 Aligned_cols=52 Identities=10% Similarity=-0.009 Sum_probs=38.6
Q ss_pred cCCCHHHHHHHHHHHHH-CCCCccHHHHHHHHHhhcCCCchHHHHHHHHhccccc
Q 041561 66 ENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDH 119 (156)
Q Consensus 66 ~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 119 (156)
..++++++..+++.|.- +--.|...+|-..|. ...|++++|.++|+.+..+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~--i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLL--IARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHH--HHcCCHHHHHHHHHhhhccC
Confidence 38889999999999975 222344556665554 47899999999999995543
No 363
>PRK04841 transcriptional regulator MalT; Provisional
Probab=38.75 E-value=2.6e+02 Score=24.16 Aligned_cols=87 Identities=8% Similarity=-0.026 Sum_probs=42.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC----CCCccHHHH--HHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC--
Q 041561 60 MIHGYAENEYVEQAISLYKDIIAS----GVKHDGVTF--VAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-- 131 (156)
Q Consensus 60 li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-- 131 (156)
+-..+...|++++|.+.+++...- +..+..... ...+..+...|+.+.+...+........ ..+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~--------~~~~~ 689 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF--------ANNHF 689 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC--------ccchh
Confidence 444556677777777777666431 111110000 0111223346677777777665522100 001
Q ss_pred ChhhHHHHHHHHhhcCCHhHHhh
Q 041561 132 DLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 132 d~~~~~~li~~~~~~g~~~~a~~ 154 (156)
....+..+-.++...|+.++|..
T Consensus 690 ~~~~~~~~a~~~~~~g~~~~A~~ 712 (903)
T PRK04841 690 LQGQWRNIARAQILLGQFDEAEI 712 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHH
Confidence 01113455567778888888765
No 364
>PRK12357 glutaminase; Reviewed
Probab=38.54 E-value=1.8e+02 Score=22.29 Aligned_cols=61 Identities=15% Similarity=0.104 Sum_probs=37.0
Q ss_pred HhCCCCchHHHhHHHHHhhhc-c-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHH
Q 041561 33 KDGYGNDIFVGSAPINIYCNC-G-----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFV 93 (156)
Q Consensus 33 ~~g~~~~~~~~~~li~~~~~~-~-----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 93 (156)
+-|..|+-..||++++.=... | .+-++||.+.....+++...+.++++-.+.+..|..+|.
T Consensus 95 ~VG~EPSG~~FNSi~~Le~~~~g~P~NPmINAGAI~~~sll~g~~~~~r~~~il~~~~~lag~~l~~d~~v~~ 167 (326)
T PRK12357 95 RVDVEPTGDAFNSIIRLEIHKPGKPFNPMINAGAITVASLLPGTSVQEKLESLYVLIEKMIGKRPAINEEVFQ 167 (326)
T ss_pred HhCCCCCCCCcchhhhhhhcCCCCCCCCcccHHHHHHHHHhccCCchHHHHHHHHHHHHHhCCCCccCHHHHH
Confidence 357889999999997554433 4 455556654333334566666666665445555555543
No 365
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=38.47 E-value=76 Score=24.12 Aligned_cols=48 Identities=6% Similarity=-0.076 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCC
Q 041561 91 TFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSN 148 (156)
Q Consensus 91 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~ 148 (156)
+++..-+.|..+|.+.+|.++.+....- -+.+...|-.+++.++..||
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl----------dpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL----------DPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc----------ChhhhHHHHHHHHHHHHhcc
No 366
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.26 E-value=1.4e+02 Score=23.37 Aligned_cols=80 Identities=10% Similarity=0.028 Sum_probs=53.7
Q ss_pred cCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHH----HH
Q 041561 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDL----VS 141 (156)
Q Consensus 66 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~l----i~ 141 (156)
-+|...+|-..|+++.+. ...|...++--=++|...|+.+.-+..++.+.-+ +.||...|.-+ --
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~----------wn~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK----------WNADLPCYSYVHGMYAF 183 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc----------cCCCCcHHHHHHHHHHh
Confidence 356666777777777654 4557777877888899999998888888887433 45666444332 23
Q ss_pred HHhhcCCHhHHhhhC
Q 041561 142 SCQVHSNVRLAKKAA 156 (156)
Q Consensus 142 ~~~~~g~~~~a~~~~ 156 (156)
+....|.+++|++.|
T Consensus 184 gL~E~g~y~dAEk~A 198 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQA 198 (491)
T ss_pred hHHHhccchhHHHHH
Confidence 344567777777643
No 367
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=38.21 E-value=70 Score=17.98 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=29.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCC
Q 041561 60 MIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103 (156)
Q Consensus 60 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 103 (156)
++..+.+.+.+-....+.+.+...|...+..+.--.++++-+.|
T Consensus 3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 45555666666666777777777777776677766666666555
No 368
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.18 E-value=85 Score=20.59 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=25.7
Q ss_pred HHHHHhcCC-CchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 10 TVLSSCAKL-SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 10 ~ll~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
.+++.+... +..-.|.+|++.+.+.+...+..|--.-|+.+.+.|
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 345555543 456778888888887776555533333333333333
No 369
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=38.02 E-value=90 Score=18.69 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCC
Q 041561 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103 (156)
Q Consensus 24 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 103 (156)
+..+++.|.+.|+- +-.-.=.--++.-..++|.++.+.+..+| ..+|..+.+++-..|
T Consensus 16 v~~ild~L~~~gvl------------------t~~~~e~I~~~~t~~~qa~~Lld~L~trG----~~Af~~F~~aL~~~~ 73 (86)
T cd08323 16 TSYIMDHMISDGVL------------------TLDEEEKVKSKATQKEKAVMLINMILTKD----NHAYVSFYNALLHEG 73 (86)
T ss_pred HHHHHHHHHhcCCC------------------CHHHHHHHHcCCChHHHHHHHHHHHHhcC----HHHHHHHHHHHHhcC
Confidence 45577777777752 22222222235566899999999998887 678888888887666
Q ss_pred chHHHHHHH
Q 041561 104 LVYAEVEIF 112 (156)
Q Consensus 104 ~~~~a~~~~ 112 (156)
..+.|.-+.
T Consensus 74 ~~~La~lL~ 82 (86)
T cd08323 74 YKDLALLLH 82 (86)
T ss_pred ChHHHHHHh
Confidence 555554443
No 370
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.98 E-value=40 Score=25.40 Aligned_cols=36 Identities=11% Similarity=0.175 Sum_probs=29.7
Q ss_pred CCCccHHH-HHHHHHhhcCCCchHHHHHHHHhcccccc
Q 041561 84 GVKHDGVT-FVAILTPCSHSGLVYAEVEIFNSMEHDHE 120 (156)
Q Consensus 84 g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 120 (156)
.+.||..+ |+..|+.-.+.||+++|..++++- ++.|
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEA-e~LG 287 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEA-ERLG 287 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhC
Confidence 34566665 668999999999999999999999 6666
No 371
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=37.34 E-value=1.6e+02 Score=21.46 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 58 NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
+..|+.+-+.+.+.+++.+.++=++.. ..|.-+=..+++-+|-.|++++|...++-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 444566667777888887777665543 223344455778888888888877655543
No 372
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=37.26 E-value=1e+02 Score=19.18 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=38.2
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc---------chHHHHHHHHHcCCCHHHHHHHHHH
Q 041561 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------VTWNEMIHGYAENEYVEQAISLYKD 79 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---------~~~~~li~~~~~~g~~~~a~~~~~~ 79 (156)
.++.|++++|++.+++..+.- .---...+.||+.-++.+ +.=..||.+.......++..++|++
T Consensus 30 ~ak~gdf~~A~~~l~eA~~~l-~~AH~~qt~liq~Ea~g~~~~~slLlvHAQDhLMta~~~~~la~elI~lyk~ 102 (104)
T PRK09591 30 AMREGNFDLAEQKLNQSNEEL-LEAHHAQTKLLQEYASGTEIKIEIIMVHAQDHLMTTMTLREVAKEMLALYKK 102 (104)
T ss_pred HHHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCCccceeehhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368899999999998876641 122233455565555544 3445566666555555555555544
No 373
>PF13963 Transpos_assoc: Transposase-associated domain
Probab=37.26 E-value=22 Score=20.70 Aligned_cols=28 Identities=14% Similarity=0.068 Sum_probs=22.1
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchHHHh
Q 041561 17 KLSSLFLGRQILTRIVKDGYGNDIFVGS 44 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 44 (156)
++........|.+.+...|+.|+-..|.
T Consensus 46 ~N~~~~~~~~V~~HL~~~Gf~~~Y~~W~ 73 (77)
T PF13963_consen 46 KNEKRQSRDDVHEHLVCRGFMPNYTVWT 73 (77)
T ss_pred ccCccCCHHHHHHHHHHhCCCCCCCeec
Confidence 4445677899999999999999876653
No 374
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=37.17 E-value=96 Score=18.76 Aligned_cols=43 Identities=12% Similarity=-0.017 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 26 QILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 26 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
++|+.....|+..|+.+|..+ ++-...+=-++...++++.|-.
T Consensus 29 EL~ELa~~AGv~~dp~VFrii--------------ldLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRII--------------LDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHH--------------HHHHHcCCCHHHHHHHHHHHHc
Confidence 788888999999999544444 4444555557777777777753
No 375
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=37.16 E-value=65 Score=20.63 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=23.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
++|+-+.++.-.++|+++.+-|.+.|-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 347778889999999999999999883
No 376
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=37.13 E-value=86 Score=18.20 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=35.7
Q ss_pred HHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 96 LTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
|......+..+.+.+++.....+. ++..|...|+.++...|..+-|..+
T Consensus 37 i~~~~~~~~~~~~~~lL~~W~~~~-----------g~~at~~~L~~aL~~~~~~d~a~~i 85 (88)
T smart00005 37 IRTEAPRDLAEQSVQLLRLWEQRE-----------GKNATLGTLLEALRKMGRDDAVELL 85 (88)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHcc-----------chhhHHHHHHHHHHHcChHHHHHHH
Confidence 333333345677888888885553 3457999999999999999988765
No 377
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.08 E-value=66 Score=24.61 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=41.8
Q ss_pred hcCCCchHHHHHHHHHHH-HhCCCCchHHHhHH--HHHhhhcc-----------------chHHHHHHHHHcCCCHHHHH
Q 041561 15 CAKLSSLFLGRQILTRIV-KDGYGNDIFVGSAP--INIYCNCG-----------------VTWNEMIHGYAENEYVEQAI 74 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~-~~g~~~~~~~~~~l--i~~~~~~~-----------------~~~~~li~~~~~~g~~~~a~ 74 (156)
+-+.|+.+.|...+-.|. +..-..|++|...+ .++=++-+ +||..++--||++.-++-|-
T Consensus 251 eyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 251 EYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred hhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHH
Confidence 457788889988888884 33345566554433 22222111 77888888888887777777
Q ss_pred HHHHH
Q 041561 75 SLYKD 79 (156)
Q Consensus 75 ~~~~~ 79 (156)
+++.+
T Consensus 331 DvLAE 335 (459)
T KOG4340|consen 331 DVLAE 335 (459)
T ss_pred HHHhh
Confidence 77655
No 378
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=36.57 E-value=77 Score=19.11 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.9
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDII 81 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 81 (156)
..|..+++++...++.+++..+|+.+-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ 29 (88)
T TIGR02531 3 ELLDELFDAILTLKNREECYRFFDDIA 29 (88)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 468899999999999999999999873
No 379
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.38 E-value=1.1e+02 Score=23.63 Aligned_cols=44 Identities=7% Similarity=-0.069 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhh
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYC 51 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 51 (156)
|-++.+...+.|.++.+..+|++.+..|..|=..+-.+|++..-
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 66777888888988999999999999999888877777766544
No 380
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=35.97 E-value=1.2e+02 Score=21.92 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHCCCC-ccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 69 YVEQAISLYKDIIASGVK-HDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 69 ~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
+++...++++.-.+.|++ .-...|+.+|+--....++++.++++..+
T Consensus 187 dl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 187 DLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIV 234 (236)
T ss_pred cHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHh
Confidence 356666677777777653 23345777787777777888888887766
No 381
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=35.71 E-value=2.1e+02 Score=22.35 Aligned_cols=99 Identities=11% Similarity=-0.005 Sum_probs=62.1
Q ss_pred CCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhc----c---------------------------chHHHHHHHHHc
Q 041561 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC----G---------------------------VTWNEMIHGYAE 66 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----~---------------------------~~~~~li~~~~~ 66 (156)
.|+-+.|++++..+....-.+++.++-.+=..|-.. + +.+.+|+.....
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGH 274 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCC
Confidence 899999999999966655566666666554444321 1 334445444443
Q ss_pred CCC-HHHHHHH---HHHH-HHCC---CCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 67 NEY-VEQAISL---YKDI-IASG---VKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 67 ~g~-~~~a~~~---~~~m-~~~g---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
... -.+..++ +..+ .++| -..|-.-+..++.++.-.|+.++|.+..+.|.
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 221 1122222 2222 2333 34666678889999999999999999999984
No 382
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=35.57 E-value=84 Score=21.39 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=31.6
Q ss_pred HHHHHHHH-CCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 75 SLYKDIIA-SGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 75 ~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
++++.+.+ .|+.|..+.+..++..+++.=.++.+..+++.+.
T Consensus 152 ~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l 194 (199)
T smart00164 152 DLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLF 194 (199)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 45566664 7788888888888888887777888888887763
No 383
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=35.19 E-value=72 Score=24.27 Aligned_cols=36 Identities=8% Similarity=0.037 Sum_probs=25.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHH-CCCCccHHHHHH
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVA 94 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ 94 (156)
.+|+.|.+.|.+++|.++....++ ..-.|+...+..
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~ 147 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKS 147 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHH
Confidence 579999999999999999888764 233455444433
No 384
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=34.81 E-value=2.7e+02 Score=23.18 Aligned_cols=137 Identities=10% Similarity=0.044 Sum_probs=76.4
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-----chHHHHHHHHH-------------cCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----VTWNEMIHGYA-------------ENE 68 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-----~~~~~li~~~~-------------~~g 68 (156)
..-++|..++.+.....++.+-.+|...| .+-..+-.+++.|.+.+ ..|..+...+. ..+
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEki 145 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENGNEQLYSLWERLVEYDFNDVVIGRELADKYEKI 145 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcCchhhHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 34567788888888888888888887765 45666777778887776 44444443332 223
Q ss_pred CHHHHHHHHHHHHHCC-----CCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHH
Q 041561 69 YVEQAISLYKDIIASG-----VKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143 (156)
Q Consensus 69 ~~~~a~~~~~~m~~~g-----~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~ 143 (156)
+...+...|.....+= ...-...|.-++.-- ..+.|...++...+..+.| ...-.+.+.-+-.-|
T Consensus 146 k~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg--------~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 146 KKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLG--------EGRGSVLMQDVYKKY 215 (711)
T ss_pred chhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhc--------cchHHHHHHHHHHHh
Confidence 3333333333332210 001111233333211 2344444455555544443 234566677777788
Q ss_pred hhcCCHhHHhhh
Q 041561 144 QVHSNVRLAKKA 155 (156)
Q Consensus 144 ~~~g~~~~a~~~ 155 (156)
.-+.++.+|.+|
T Consensus 216 s~~eN~~eai~I 227 (711)
T COG1747 216 SENENWTEAIRI 227 (711)
T ss_pred ccccCHHHHHHH
Confidence 888888888775
No 385
>PRK14529 adenylate kinase; Provisional
Probab=34.67 E-value=51 Score=23.59 Aligned_cols=65 Identities=20% Similarity=0.199 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccH
Q 041561 22 FLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDG 89 (156)
Q Consensus 22 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 89 (156)
+.+.++-+.|.+..+.||..+...+.+...+.+ ...-+|++|=+. .++|..+++.+...|..||.
T Consensus 44 ~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~-~~g~iLDGfPRt--~~Qa~~l~~~l~~~~~~~~~ 108 (223)
T PRK14529 44 ELGKKAKEYIDRGDLVPDDITIPMILETLKQDG-KNGWLLDGFPRN--KVQAEKLWEALQKEGMKLDY 108 (223)
T ss_pred hHHHHHHHHHhccCcchHHHHHHHHHHHHhccC-CCcEEEeCCCCC--HHHHHHHHHHHHhcCCCCCE
Confidence 345555555655557888887777776665543 333455555554 67777777777666766663
No 386
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=34.54 E-value=51 Score=26.45 Aligned_cols=19 Identities=26% Similarity=0.510 Sum_probs=11.2
Q ss_pred HHHHHHHHHHCCCCccHHH
Q 041561 73 AISLYKDIIASGVKHDGVT 91 (156)
Q Consensus 73 a~~~~~~m~~~g~~p~~~t 91 (156)
|-+++.++.++|++||..|
T Consensus 244 aaei~~~l~~r~~~pD~vt 262 (561)
T COG2987 244 AAEILPELLRRGIRPDLVT 262 (561)
T ss_pred HHHHHHHHHHcCCCCceec
Confidence 5556666666666665554
No 387
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=34.07 E-value=81 Score=17.83 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=32.3
Q ss_pred chHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 104 ~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
..+.+.+++..+..+ .++..|...|+.++.+.|..+.|.++
T Consensus 37 ~~~~~~~mL~~W~~~-----------~~~~at~~~L~~aL~~~~~~~~a~~~ 77 (79)
T cd01670 37 VREQAYQLLLKWEER-----------EGDNATVGNLIEALREIGRRDDAAKL 77 (79)
T ss_pred HHHHHHHHHHHHHhc-----------cCcCcHHHHHHHHHHHcCHHHHHHHh
Confidence 467788888888554 34588999999999999987777664
No 388
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.93 E-value=2.9e+02 Score=23.29 Aligned_cols=70 Identities=9% Similarity=0.044 Sum_probs=38.4
Q ss_pred CCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH
Q 041561 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV 90 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 90 (156)
.|++..+..++++....|- ...+...+-..+.... ...-.++++... |+...+++++++|.+.|..|...
T Consensus 216 ~GslR~al~lLdq~ia~~~--~~It~~~V~~~Lg~~~~~~i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~~i 286 (618)
T PRK14951 216 RGSMRDALSLTDQAIAFGS--GQLQEAAVRQMLGSVDRSHVFRLIDALAQ-GDGRTVVETADELRLNGLSAAST 286 (618)
T ss_pred CCCHHHHHHHHHHHHHhcC--CCcCHHHHHHHHcCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 3677777777766554431 1112222222222211 233345555554 78888889899888888776543
No 389
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=33.67 E-value=40 Score=21.46 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhCCCCchH
Q 041561 24 GRQILTRIVKDGYGNDIF 41 (156)
Q Consensus 24 a~~~~~~m~~~g~~~~~~ 41 (156)
=+.+.++|.++|.+||..
T Consensus 54 H~lv~~EM~~RGY~~~~~ 71 (120)
T TIGR02328 54 HLLVMEEMATRGYHVSKQ 71 (120)
T ss_pred HHHHHHHHHHcCCCCChh
Confidence 356788999999999983
No 390
>COG5210 GTPase-activating protein [General function prediction only]
Probab=33.04 E-value=81 Score=25.44 Aligned_cols=44 Identities=18% Similarity=0.165 Sum_probs=38.1
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 73 AISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 73 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
.-+++..|++.|+.+..+++..++..+.+.-.++.+.++++.+-
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf 404 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLF 404 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34678888889999999999999999999999999999988773
No 391
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=32.76 E-value=34 Score=18.21 Aligned_cols=19 Identities=5% Similarity=0.023 Sum_probs=12.1
Q ss_pred CCchHHHHHHHHhcccccc
Q 041561 102 SGLVYAEVEIFNSMEHDHE 120 (156)
Q Consensus 102 ~~~~~~a~~~~~~m~~~~~ 120 (156)
.-|++.|...|..++....
T Consensus 26 ~Wd~~~A~~~F~~l~~~~~ 44 (51)
T PF03943_consen 26 NWDYERALQNFEELKAQGK 44 (51)
T ss_dssp TT-CCHHHHHHHHCCCTT-
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 4578888888888755544
No 392
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=32.73 E-value=1.4e+02 Score=19.46 Aligned_cols=44 Identities=9% Similarity=-0.031 Sum_probs=34.2
Q ss_pred HHhHHHHHhhhcc-----chHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 42 VGSAPINIYCNCG-----VTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 42 ~~~~li~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
-|...|++|-.+| ..+..+|-=..-.|+++.|+++.+-..++|.
T Consensus 31 ~Y~p~v~g~L~~g~g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 31 KYLPWVEGVLASGSGAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hHHHHHHHHHHcCCCCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 5677778887776 4555666666788999999999999998874
No 393
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=32.39 E-value=1.4e+02 Score=21.47 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhCC--CC----chHHHhHHHHHhhhcc------chHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041561 21 LFLGRQILTRIVKDGY--GN----DIFVGSAPINIYCNCG------VTWNEMIHGYAENEYVEQAISLYKDII 81 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~--~~----~~~~~~~li~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~ 81 (156)
.++-..+-+...+.|+ +| |...+..+++.+...| +.|+++|+--.-.-++++..++|..++
T Consensus 163 leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 163 LEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 3444444444445553 22 3445555666666665 566666665555556666666666554
No 394
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=32.39 E-value=2.2e+02 Score=25.83 Aligned_cols=74 Identities=9% Similarity=0.158 Sum_probs=49.8
Q ss_pred HHHHHhcCCC-chHHHHHHHHHHHH---hCCCCch---HHHhHHHHHhhhcc---chHHHHHHHHHcCCCHHHHHHHHHH
Q 041561 10 TVLSSCAKLS-SLFLGRQILTRIVK---DGYGNDI---FVGSAPINIYCNCG---VTWNEMIHGYAENEYVEQAISLYKD 79 (156)
Q Consensus 10 ~ll~~~~~~~-~~~~a~~~~~~m~~---~g~~~~~---~~~~~li~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~ 79 (156)
.++.+|.+.| +.+.|+++|+.|.+ .|+.-+- +.+-+.-.+|.|+. .-|.++|+. ..|..++...++.+
T Consensus 696 ~Fi~ga~~~G~~~~~a~~If~~i~~Fa~YgFnKSHa~AYa~iayqtAyLKahyP~eF~aall~~--~~~~~~k~~~~i~e 773 (1107)
T PRK06920 696 HFVQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMTALLSS--AIGNEDKIVQYIRE 773 (1107)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhccHHHHHHHHhhc--CcCCcHHHHHHHHH
Confidence 4677777776 45669999998865 4554322 33334456777776 345556654 34678888899999
Q ss_pred HHHCCC
Q 041561 80 IIASGV 85 (156)
Q Consensus 80 m~~~g~ 85 (156)
+++.|+
T Consensus 774 ~~~~gi 779 (1107)
T PRK06920 774 TKRKGF 779 (1107)
T ss_pred HHHcCC
Confidence 999885
No 395
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.27 E-value=1.2e+02 Score=22.54 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=19.6
Q ss_pred CChhhHHHHHHHHhhcCCHhHHh
Q 041561 131 DDLVVWGDLVSSCQVHSNVRLAK 153 (156)
Q Consensus 131 pd~~~~~~li~~~~~~g~~~~a~ 153 (156)
=|+..|..++.||...|+.+.+.
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHH
Confidence 38899999999999999877653
No 396
>PRK00971 glutaminase; Provisional
Probab=31.81 E-value=2.3e+02 Score=21.52 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=33.8
Q ss_pred HHhCCCCchHHHhHHHHHhhhcc-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCccHHHH
Q 041561 32 VKDGYGNDIFVGSAPINIYCNCG-----------VTWNEMIHGYAENEYVEQAISLYKDIIAS-GVKHDGVTF 92 (156)
Q Consensus 32 ~~~g~~~~~~~~~~li~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~ 92 (156)
.+-|++|+-..||+|++.=...| .+-++||.+-....+++..++.++++-.. .+..|...|
T Consensus 85 ~~VG~EPSG~~FNSi~~Le~~~g~P~NPmINAGAI~~~sll~g~~~~~~~~~il~~~~~~ag~~~i~~d~~v~ 157 (307)
T PRK00971 85 QRVGKEPSGDPFNSLVQLELEQGKPRNPMINAGAIVVTDLLQGRLSEEPCERLLEFVRQLAGNPDILYDEVVA 157 (307)
T ss_pred HHhCCCCCCCCCcchhhhhccCCCCCCccccHHHHHHHHhhccCCcHHHHHHHHHHHHHHhCCCCCcccHHHH
Confidence 34588999999999975554555 33444444333223345555555555432 344444443
No 397
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=31.79 E-value=1.2e+02 Score=18.31 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=11.2
Q ss_pred CCchHHHhHHHHHhhhcc
Q 041561 37 GNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 37 ~~~~~~~~~li~~~~~~~ 54 (156)
.+|+++|-.-|++++.-.
T Consensus 54 d~DsyVYL~aI~~L~~La 71 (92)
T PF10363_consen 54 DEDSYVYLNAIKGLAALA 71 (92)
T ss_pred CCCchHHHHHHHHHHHHH
Confidence 367777777766655443
No 398
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=31.67 E-value=1e+02 Score=17.97 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=32.3
Q ss_pred chHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 104 ~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.-+.+.+++.....+.| ...|+..|+.++...|.-.-|..|
T Consensus 38 ~~eq~~~mL~~W~~k~G-----------~~At~~~L~~aL~~~~~~~~Ae~i 78 (79)
T cd08784 38 HRDRVYELLRIWRNKEG-----------RKATLNTLIKALKDLDQRRTAEKI 78 (79)
T ss_pred hHHHHHHHHHHHHhccC-----------cCcHHHHHHHHHHHcccHhHHHHc
Confidence 34667788888866544 477899999999999998888765
No 399
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=31.63 E-value=1.7e+02 Score=21.13 Aligned_cols=58 Identities=16% Similarity=0.065 Sum_probs=42.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH----CC-CCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 58 NEMIHGYAENEYVEQAISLYKDIIA----SG-VKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~m~~----~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
-.|-.-|.+.|++++|.++|+.+.. .| ..+...+...++.+..+.|+.++...+--++
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3577788899999999999999853 23 3455556666777777888888777654443
No 400
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=31.34 E-value=65 Score=20.72 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=22.4
Q ss_pred CCchHHHHHHHHHHHHhCCCCchHHHhHH
Q 041561 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAP 46 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 46 (156)
.|+...+.++++.+...|+.|-...|..-
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~L~ 38 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWALQ 38 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHHHH
Confidence 58899999999999999999988777643
No 401
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=31.33 E-value=2.8e+02 Score=22.30 Aligned_cols=98 Identities=13% Similarity=0.117 Sum_probs=54.2
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcC----CCHHHHHHHHHHHHHC
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAEN----EYVEQAISLYKDIIAS 83 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~ 83 (156)
+..+++..+=.||-+.+.+.+.+-.+.+=...+ ....++ ..|+.++..++.. ...+.+.++++.+.++
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~-la~L~L-------L~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~ 262 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSP-LAALVL-------LWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR 262 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchH-HHHHHH-------HHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh
Confidence 445666667777777777777766543211111 112222 4455555555543 3466777777777653
Q ss_pred CCCccHHHHHHHH-HhhcCCCchHHHHHHHHhc
Q 041561 84 GVKHDGVTFVAIL-TPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 84 g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~m 115 (156)
-|+...|...- +.+...|++++|.+.|+..
T Consensus 263 --yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a 293 (468)
T PF10300_consen 263 --YPNSALFLFFEGRLERLKGNLEEAIESFERA 293 (468)
T ss_pred --CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 45555554433 2333566777777777754
No 402
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=31.17 E-value=1.9e+02 Score=26.45 Aligned_cols=74 Identities=5% Similarity=0.086 Sum_probs=48.6
Q ss_pred HHHHHhcCCC-chHHHHHHHHHHHH---hCCCCch---HHHhHHHHHhhhcc---chHHHHHHHHHcCCCHHHHHHHHHH
Q 041561 10 TVLSSCAKLS-SLFLGRQILTRIVK---DGYGNDI---FVGSAPINIYCNCG---VTWNEMIHGYAENEYVEQAISLYKD 79 (156)
Q Consensus 10 ~ll~~~~~~~-~~~~a~~~~~~m~~---~g~~~~~---~~~~~li~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~ 79 (156)
.++.++.+.| +-+.|+++|+.|.+ .|+.-+- +..-+.=.+|.|+. .-|.++|+.. .|..++...++.+
T Consensus 729 ~Fi~ga~~~G~~~~~A~~if~~i~~Fa~YgFNKSHA~AYa~iaYqtAyLKahYP~eF~aAlLs~~--~~~~~k~~~~i~E 806 (1170)
T PRK07374 729 IFVEGASKRGVDEKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQTAYLKAHYPVAYMAALLTVN--AGSSDKVQRYISN 806 (1170)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhcC--CCCchHHHHHHHH
Confidence 3566666666 45568899998865 4553322 33334456677766 4456666654 3778888889999
Q ss_pred HHHCCC
Q 041561 80 IIASGV 85 (156)
Q Consensus 80 m~~~g~ 85 (156)
+++.|+
T Consensus 807 ak~~GI 812 (1170)
T PRK07374 807 CNSMGI 812 (1170)
T ss_pred HHHCCC
Confidence 999985
No 403
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.09 E-value=3.4e+02 Score=23.29 Aligned_cols=69 Identities=9% Similarity=-0.015 Sum_probs=39.8
Q ss_pred CCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccH
Q 041561 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDG 89 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 89 (156)
.|+++.|..+++++...| ....+...+........ ...-.++++..+ ++.++++++++++.+.|..++.
T Consensus 210 ~GdLRdALnLLDQaIayg--~g~IT~edV~~lLG~~d~e~IfdLldAI~k-~d~~~al~~L~el~~~g~d~~~ 279 (702)
T PRK14960 210 QGSLRDALSLTDQAIAYG--QGAVHHQDVKEMLGLIDRTIIYDLILAVHQ-NQREKVSQLLLQFRYQALDVSL 279 (702)
T ss_pred CCCHHHHHHHHHHHHHhc--CCCcCHHHHHHHhccCCHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCHHH
Confidence 467777777777665544 12233333333333222 233445555554 6678888888888888776653
No 404
>PF14162 YozD: YozD-like protein
Probab=30.95 E-value=81 Score=16.97 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHCCCCccHH
Q 041561 72 QAISLYKDIIASGVKHDGV 90 (156)
Q Consensus 72 ~a~~~~~~m~~~g~~p~~~ 90 (156)
-|.-.|.++.++|..|+..
T Consensus 13 IAefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 13 IAEFFYHELVKRGYVPTEE 31 (57)
T ss_pred HHHHHHHHHHHccCCCcHH
Confidence 4566788999999999864
No 405
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=30.82 E-value=2.2e+02 Score=23.15 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
-..|+.-|-..|++.+|.+-.+++..- .--.++.+-+++.+.-+.++-....++++..
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~c 569 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKEC 569 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 356888999999999999888876422 2335677888888887777755444444433
No 406
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=30.77 E-value=92 Score=20.63 Aligned_cols=39 Identities=5% Similarity=0.022 Sum_probs=31.4
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHH
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPIN 48 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 48 (156)
.+|..+.+.+....++++.+.+.+.|+..+..|-...+.
T Consensus 5 ~~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~ 43 (146)
T TIGR01529 5 ERIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLR 43 (146)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 356677788889999999999999999888766666554
No 407
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=30.48 E-value=71 Score=19.10 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=16.9
Q ss_pred CCCcccHHHHHHHhcCCCchHHHHHHHH
Q 041561 2 YPTQFPFTTVLSSCAKLSSLFLGRQILT 29 (156)
Q Consensus 2 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 29 (156)
.|+...||..+....+.+.+..|...+.
T Consensus 13 ~pt~~~yn~yiN~~~~~nkVaPa~n~L~ 40 (83)
T PF10963_consen 13 NPTPTAYNKYINEMAMDNKVAPAHNYLM 40 (83)
T ss_pred ccCHHHHHHHHHHhccCCCchHHHHHHH
Confidence 4666666666666666666555544333
No 408
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=30.30 E-value=3.1e+02 Score=22.47 Aligned_cols=72 Identities=15% Similarity=0.067 Sum_probs=42.6
Q ss_pred CCchHHHHHHHHHHHHhCC-CCchHHHhHHHHHhhhcc-chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH
Q 041561 18 LSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCG-VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV 90 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 90 (156)
.|++..|..+++.+...+- .....+...+-....... ...-.|+++.. .|+.++|+++++++...|..|...
T Consensus 220 ~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~-~~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 220 EGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYII-HRETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 4677777777777654321 111233333333333332 22233444444 489999999999999999888755
No 409
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=30.04 E-value=2.4e+02 Score=22.65 Aligned_cols=51 Identities=10% Similarity=-0.055 Sum_probs=30.6
Q ss_pred cCCCchHHHHHHHHHHHHh---CCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHH
Q 041561 16 AKLSSLFLGRQILTRIVKD---GYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDI 80 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 80 (156)
.+.|++..|.+.+.+.... ...|+. ..|...-.+..+.|++++|+..=++-
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~na--------------klY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNA--------------KLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhH--------------HHHHHhHhhhcccCCchhhhhhhhhh
Confidence 4778889999988887653 234444 33444444555566666665554443
No 410
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=29.90 E-value=2.7e+02 Score=21.79 Aligned_cols=132 Identities=11% Similarity=0.095 Sum_probs=74.1
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHc---CCCHHHHHHHHHHHHHCCCC
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAE---NEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~ 86 (156)
.++-+|-...+++...++.+.|....-.. ..-+..|. ..| .-++.+ .|+.++|.+++..+....-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~--~~~~~~i~------~~y---afALnRrn~~gdre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCD--VANQHNIK------FQY---AFALNRRNKPGDREKALQILLPVLESDEN 214 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccc--hhcchHHH------HHH---HHHHhhcccCCCHHHHHHHHHHHHhccCC
Confidence 44446777888888888888887642110 11111111 222 233445 78888999988886655555
Q ss_pred ccHHHHHHHHHhhc---------CCCchHHHHHHHHhcccccccCCC---------c-----------------------
Q 041561 87 HDGVTFVAILTPCS---------HSGLVYAEVEIFNSMEHDHEVKPK---------C----------------------- 125 (156)
Q Consensus 87 p~~~t~~~ll~~~~---------~~~~~~~a~~~~~~m~~~~~~~~~---------c----------------------- 125 (156)
++.-||..+-+.|- ....+++|...+. +-+.+.++ +
T Consensus 215 ~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~---kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ 291 (374)
T PF13281_consen 215 PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYR---KGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSS 291 (374)
T ss_pred CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHH---HHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 55555554433322 1223555555444 33333333 0
Q ss_pred ------CCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 126 ------LMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 126 ------~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
...-..|-.-+.+++.++.-.|+.++|.+.
T Consensus 292 llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a 327 (374)
T PF13281_consen 292 LLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQA 327 (374)
T ss_pred HHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 111235667778888888888888888764
No 411
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=29.87 E-value=43 Score=24.25 Aligned_cols=21 Identities=43% Similarity=0.762 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHCCCCccHHH
Q 041561 71 EQAISLYKDIIASGVKHDGVT 91 (156)
Q Consensus 71 ~~a~~~~~~m~~~g~~p~~~t 91 (156)
..|+++|+.+.++|++|+..+
T Consensus 67 ~~Al~i~~lL~~~Gv~ps~v~ 87 (269)
T COG3294 67 NSALAIYKLLLEKGVKPSGVT 87 (269)
T ss_pred chHHHHHHHHHhcCCCccccc
Confidence 468999999999999998765
No 412
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=29.77 E-value=3.2e+02 Score=22.57 Aligned_cols=68 Identities=9% Similarity=0.208 Sum_probs=40.3
Q ss_pred CCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc
Q 041561 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD 88 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 88 (156)
.|++..|..++++....| .+..+...+........ .....++++.. .|+..++.++++.+...|..|.
T Consensus 211 ~G~~R~al~~Ldq~~~~~--~~~It~~~V~~vlg~~~~~~i~~l~~al~-~~d~~~al~~l~~l~~~g~d~~ 279 (559)
T PRK05563 211 EGGMRDALSILDQAISFG--DGKVTYEDALEVTGSVSQEALDDLVDAIV-EGDVAKALKILEELLDEGKDPN 279 (559)
T ss_pred CCCHHHHHHHHHHHHHhc--cCCCCHHHHHHHhCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCCCHH
Confidence 367777777777665543 12233333333333222 23345555554 4688889999999888887664
No 413
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=29.72 E-value=68 Score=21.60 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=24.6
Q ss_pred HHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhccccc
Q 041561 76 LYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDH 119 (156)
Q Consensus 76 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 119 (156)
+|+.+....+...+..-..-|-...+.++++.|.+|+..+..++
T Consensus 77 Lfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t~h 120 (157)
T PF07304_consen 77 LFDHLNNGKLSKPVVDKLHQLAQALQARDYDAADEIHVDLMTDH 120 (157)
T ss_dssp HHHHHHHT-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Confidence 44444433344444333333333347899999999999986553
No 414
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=29.69 E-value=95 Score=19.09 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=31.2
Q ss_pred hHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 105 VYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 105 ~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
-+...+++..+.+.. +...+++.||.++...+.-.-|.+|
T Consensus 49 ~Eq~~qmL~~W~~~~-----------G~~a~~~~Li~aLr~~~l~~~Ad~I 88 (97)
T cd08316 49 AEQKVQLLRAWYQSH-----------GKTGAYRTLIKTLRKAKLCTKADKI 88 (97)
T ss_pred HHHHHHHHHHHHHHh-----------CCCchHHHHHHHHHHccchhHHHHH
Confidence 577778888886554 4567789999999999888877765
No 415
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=29.54 E-value=81 Score=16.35 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHhCCCCc
Q 041561 21 LFLGRQILTRIVKDGYGND 39 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~~~~ 39 (156)
.+-.+++.+.+.+.|+.||
T Consensus 28 ~~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 28 EETRERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHHHHHHHHHTB-SS
T ss_pred HHHHHHHHHHHHHHCCCCC
Confidence 4557888888999999987
No 416
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=29.54 E-value=4.5e+02 Score=24.19 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCC--chHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHH----------HHHHHHcCCCHHHHHH
Q 041561 8 FTTVLSSCAKLS--SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNE----------MIHGYAENEYVEQAIS 75 (156)
Q Consensus 8 ~~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~----------li~~~~~~g~~~~a~~ 75 (156)
.-.+|.++.+.+ .++.+.+....+.+....++....-.-|..+...+..||+ ++-+-....|+.+-+-
T Consensus 793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~Lvdvn~lfn~ALgtYDl~Lal~VAq~SqkDPkEyLP 872 (1265)
T KOG1920|consen 793 NLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFLVDVNELFNSALGTYDLDLALLVAQKSQKDPKEYLP 872 (1265)
T ss_pred hHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhhccHHHHHHhhhcccchHHHHHHHHHhccChHHHHH
Confidence 345677777776 6777777777666422222221111112222222233333 4555566788999999
Q ss_pred HHHHHHHC-----CCCccHH--HHHHHHHhhcCCC--chHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHH
Q 041561 76 LYKDIIAS-----GVKHDGV--TFVAILTPCSHSG--LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141 (156)
Q Consensus 76 ~~~~m~~~-----g~~p~~~--t~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~ 141 (156)
+++++++. .+.-|.+ -|.-.|..++..| -+++..++.+ +++.-+....=.+||...+.-...
T Consensus 873 ~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~----kh~Ly~~aL~ly~~~~e~~k~i~~ 943 (1265)
T KOG1920|consen 873 FLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIK----KHGLYDEALALYKPDSEKQKVIYE 943 (1265)
T ss_pred HHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHH----hcccchhhhheeccCHHHHHHHHH
Confidence 99988732 3444444 3555666666666 4555555443 222222111114566655555443
No 417
>PF13934 ELYS: Nuclear pore complex assembly
Probab=29.50 E-value=2.1e+02 Score=20.41 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=28.7
Q ss_pred chHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 55 VTWNEMIHGYAENE--YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 55 ~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
..|-..|.||.... ++++|.+.+-+ -.+.|+-. ..++.++.+.|+.+.|..++..+
T Consensus 77 ~~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 77 PKYIKFIQGFWLLDHGDFEEALELLSH---PSLIPWFP--DKILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHHHHHHhChHhHHHHHHHhCC---CCCCcccH--HHHHHHHHHCCChhHHHHHHHhc
Confidence 45666666666533 35555554411 11122211 13566666666666666666655
No 418
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=29.34 E-value=1.5e+02 Score=18.72 Aligned_cols=75 Identities=11% Similarity=0.111 Sum_probs=45.0
Q ss_pred HHHHHHHHHHH-HhCCCC-chHHHhHHHHHhhhcc--------------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 22 FLGRQILTRIV-KDGYGN-DIFVGSAPINIYCNCG--------------VTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 22 ~~a~~~~~~m~-~~g~~~-~~~~~~~li~~~~~~~--------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
+.++..+..+. ..|+.| |+..--++-....... ..|.++. |+.++....+=.+.. |.
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~~~~~~d~g~e~~~~t~~------Ge~~~~~~~ll~q~~-g~ 78 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSDEDIKDDSGLELNWKTFT------GEYDDIYEALLKQRY-GP 78 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCCCccCCCCCeEEeeeeec------CchHHHHHHHHHHHh-CC
Confidence 56777777774 578888 7755555544444433 2222222 666666555544444 67
Q ss_pred CccHHHHHHHHHhhcCCC
Q 041561 86 KHDGVTFVAILTPCSHSG 103 (156)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~ 103 (156)
..|...+...++++.+.|
T Consensus 79 ~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 79 ELDDEELPKYFKLHLDRG 96 (113)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 778888888887765433
No 419
>COG5210 GTPase-activating protein [General function prediction only]
Probab=29.18 E-value=2.6e+02 Score=22.62 Aligned_cols=62 Identities=11% Similarity=-0.024 Sum_probs=42.5
Q ss_pred chHHHhHHHHHhhhcc-chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhc
Q 041561 39 DIFVGSAPINIYCNCG-VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100 (156)
Q Consensus 39 ~~~~~~~li~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 100 (156)
++..|+.+...-.... .++.-++..+.+.-.++.+.++|+-+-..|..-....+.+++....
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~~ 423 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLLR 423 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 3344444433333222 7888899999999999999999999988887666666665555443
No 420
>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]
Probab=28.91 E-value=1.9e+02 Score=21.36 Aligned_cols=39 Identities=13% Similarity=0.288 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041561 26 QILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDII 81 (156)
Q Consensus 26 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 81 (156)
.+|..+..+|+.++. ...|.+|...++-.+-+..++.|+
T Consensus 220 ~fh~fLEeRGI~esl-----------------~~FL~~ym~~Kd~rEYl~WlksvK 258 (263)
T KOG2536|consen 220 SFHRFLEERGIKESL-----------------ASFLHAYMKNKDSREYLRWLKSVK 258 (263)
T ss_pred HHHHHHHHcCCCHHH-----------------HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344456778888776 677888889888888888877775
No 421
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.59 E-value=2.6e+02 Score=21.81 Aligned_cols=59 Identities=5% Similarity=0.066 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH--HHHHHHHhhc--CCCchHHHHHHHHhccc
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV--TFVAILTPCS--HSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~--~~~~~~~a~~~~~~m~~ 117 (156)
|..... +...+++..|.++|+++... +.++.. .+..+..+|. ..-+.++|.+.++....
T Consensus 135 ~~~a~~-l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 135 WRRAKE-LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444 44789999999999999987 555555 4555556665 36678889888887643
No 422
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=28.48 E-value=1.1e+02 Score=20.64 Aligned_cols=47 Identities=11% Similarity=0.024 Sum_probs=24.9
Q ss_pred CCCCcccHHHHHHHhcC---CC-----------chHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 1 VYPTQFPFTTVLSSCAK---LS-----------SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 1 ~~p~~~t~~~ll~~~~~---~~-----------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
+|||.+..+.+-....+ .| ..+.+++.+.++. +...|+.|+. |-.+|
T Consensus 12 iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~------~~~Ff~~Lv~-~m~SG 72 (156)
T KOG0888|consen 12 IKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLK------SKPFFPGLVE-YMSSG 72 (156)
T ss_pred eCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhc------CCccHHHHHH-HHhcC
Confidence 46777765554444433 33 3455666666665 3344455555 44444
No 423
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=28.37 E-value=1.2e+02 Score=17.35 Aligned_cols=66 Identities=15% Similarity=0.072 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCC
Q 041561 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102 (156)
Q Consensus 23 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 102 (156)
....+++.+.+.|+ .+..-.=.-.......+++.++++.+..+| ...|..++.++.+
T Consensus 17 ~~~~ild~L~~~~v------------------lt~~e~e~I~~~~t~~~k~~~LLd~l~~kg----~~a~~~F~~~L~~- 73 (85)
T PF00619_consen 17 DLDDILDHLLSRGV------------------LTEEEYEEIRSEPTRQDKARKLLDILKRKG----PEAFDIFCQALRE- 73 (85)
T ss_dssp HHHHHHHHHHHTTS------------------SSHHHHHHHHTSSSHHHHHHHHHHHHHHCC----HHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHCCC------------------CCHHHHHHHHccCChHHHHHHHHHHHHHHC----HHHHHHHHHHHHh-
Confidence 45566777777665 222222233335556778888888888777 5677777777766
Q ss_pred CchHHHHHH
Q 041561 103 GLVYAEVEI 111 (156)
Q Consensus 103 ~~~~~a~~~ 111 (156)
++...+..+
T Consensus 74 ~~~~La~~L 82 (85)
T PF00619_consen 74 NQPHLADDL 82 (85)
T ss_dssp HHHHHHHHH
T ss_pred hCHHHHHHH
Confidence 555544443
No 424
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=28.18 E-value=1.3e+02 Score=19.91 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=32.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhc
Q 041561 60 MIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS 100 (156)
Q Consensus 60 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 100 (156)
+|..+.+.+.+....++.+.+.+.|+..+..|..-.|+-+.
T Consensus 6 ~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 6 RIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 45666677778888999999999999998888877665443
No 425
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=28.09 E-value=1.5e+02 Score=18.25 Aligned_cols=38 Identities=11% Similarity=0.041 Sum_probs=23.0
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 16 AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
++.|++++|++.+++-.+.- .---...+.||+.-++.+
T Consensus 28 a~~gdfe~A~~~l~eA~~~l-~~AH~~qt~liq~ea~g~ 65 (99)
T TIGR00823 28 AKAGDFAKARALVEQAGMCL-NEAHLAQTSLLAQEAGGG 65 (99)
T ss_pred HHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCC
Confidence 68899999999988876531 112233345555555444
No 426
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.06 E-value=3.4e+02 Score=22.35 Aligned_cols=83 Identities=10% Similarity=0.024 Sum_probs=60.4
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHcCCCHHHHH
Q 041561 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAENEYVEQAI 74 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~g~~~~a~ 74 (156)
....|+++.|...|-+.....- +|-+.|+-=..+|++.| ..|+-.=.++.-.|++++|.
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred hcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 4567888888888888766433 47788888888888777 56777777777788999999
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHhh
Q 041561 75 SLYKDIIASGVKHDGVTFVAILTPC 99 (156)
Q Consensus 75 ~~~~~m~~~g~~p~~~t~~~ll~~~ 99 (156)
.-|.+=.+.. ..|...++.+.+++
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhh
Confidence 9997755432 33555677777776
No 427
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.96 E-value=2.7e+02 Score=23.40 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=48.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhc-CCCchHHHHHHHHhcccc
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS-HSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~m~~~ 118 (156)
.-|....+.|-++-|+++=+.+..-...-|....-.+|+-|+ ++.++.=..++++..+..
T Consensus 347 r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 347 RYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 346777889999999998888777555557788888899998 888998888888888443
No 428
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=27.83 E-value=3.6e+02 Score=24.22 Aligned_cols=74 Identities=19% Similarity=0.217 Sum_probs=46.8
Q ss_pred HHHHHhcCCC-chHHHHHHHHHHHH---hCCCCc-h--HHHhHHHHHhhhcc---chHHHHHHHHHcCCCHHHHHHHHHH
Q 041561 10 TVLSSCAKLS-SLFLGRQILTRIVK---DGYGND-I--FVGSAPINIYCNCG---VTWNEMIHGYAENEYVEQAISLYKD 79 (156)
Q Consensus 10 ~ll~~~~~~~-~~~~a~~~~~~m~~---~g~~~~-~--~~~~~li~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~ 79 (156)
.++.++.+.| +.+.|+++|+.+.+ .|+.-+ . +..-+.-.+|.|+. .-|.++++. ..+..+....+..+
T Consensus 647 ~Fi~ga~~~g~~~~~a~~if~~i~~Fa~YgFnKSHa~AYa~iayqtAyLKahyP~eF~aalL~~--~~~~~~k~~~~i~E 724 (973)
T PRK07135 647 KFIEGGIKNGYSKKVLEKIYSLIEKFADYGFNKSHAVAYATLAYKMAYYKANYPLVFYSALISN--SNGSQENIKKYVKE 724 (973)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhc--CCCchHHHHHHHHH
Confidence 3566666665 35668888888855 455332 2 33333456666666 334555552 34677888899999
Q ss_pred HHHCCC
Q 041561 80 IIASGV 85 (156)
Q Consensus 80 m~~~g~ 85 (156)
+++.|+
T Consensus 725 ~~~~gi 730 (973)
T PRK07135 725 AKNNGI 730 (973)
T ss_pred HHHcCC
Confidence 999985
No 429
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=27.83 E-value=3e+02 Score=21.66 Aligned_cols=81 Identities=14% Similarity=0.044 Sum_probs=56.7
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCC------------CccHHHHH--HHHHhhcCCCchHHHHHHHHhcccccccCCCcCCC
Q 041561 63 GYAENEYVEQAISLYKDIIASGV------------KHDGVTFV--AILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMP 128 (156)
Q Consensus 63 ~~~~~g~~~~a~~~~~~m~~~g~------------~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~ 128 (156)
.+.+.|.+++|..-|+...+... .|-...++ ..+.....+||...+......+.+-
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi---------- 184 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI---------- 184 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc----------
Confidence 34578899999999999876532 22222222 3455566788888888888887432
Q ss_pred CCCChhhHHHHHHHHhhcCCHhHHh
Q 041561 129 YKDDLVVWGDLVSSCQVHSNVRLAK 153 (156)
Q Consensus 129 ~~pd~~~~~~li~~~~~~g~~~~a~ 153 (156)
..+|...|..=-.+|...|++..|.
T Consensus 185 ~~Wda~l~~~Rakc~i~~~e~k~AI 209 (504)
T KOG0624|consen 185 QPWDASLRQARAKCYIAEGEPKKAI 209 (504)
T ss_pred CcchhHHHHHHHHHHHhcCcHHHHH
Confidence 3467778887788888888888774
No 430
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.48 E-value=3.3e+02 Score=21.98 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHh
Q 041561 58 NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTP 98 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 98 (156)
..++++. +.++++.|..++.+|...|..|....=..+..+
T Consensus 248 ~~li~si-~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~ 287 (472)
T PRK14962 248 RDYINAI-FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDL 287 (472)
T ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444444 568899999999999988888876644433333
No 431
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=26.89 E-value=1.1e+02 Score=25.57 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=29.3
Q ss_pred HHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhc
Q 041561 94 AILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVH 146 (156)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~ 146 (156)
++|--|.|+|++++|.++....... .......+-..+..|+.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~----------~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ----------FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG----------S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh----------hcchhHHHHHHHHHHHhC
Confidence 3455667999999999999776444 345566677777777665
No 432
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.52 E-value=3.6e+02 Score=22.03 Aligned_cols=69 Identities=9% Similarity=0.007 Sum_probs=40.8
Q ss_pred CCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH
Q 041561 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV 90 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 90 (156)
.|++..+...++.+...+ +..+...+-....... ...-.++++. ..+++++|+.++++|...|..|...
T Consensus 208 ~GdlR~aln~Lekl~~~~---~~It~~~V~~~l~~~~~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~~I 277 (504)
T PRK14963 208 DGAMRDAESLLERLLALG---TPVTRKQVEEALGLPPQERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAARTL 277 (504)
T ss_pred CCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 366777777666664432 1222233322222221 3344466666 5589999999999999999776533
No 433
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=26.51 E-value=3.6e+02 Score=22.07 Aligned_cols=109 Identities=12% Similarity=0.067 Sum_probs=58.0
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCC-----------------CCchHHHhHHHHHhhhcc------------chH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGY-----------------GNDIFVGSAPINIYCNCG------------VTW 57 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-----------------~~~~~~~~~li~~~~~~~------------~~~ 57 (156)
.+..++++.+..|-.+....+.+.+....+ .|+..+-..+...+-... .+|
T Consensus 342 ~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~ 421 (574)
T smart00638 342 ARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAY 421 (574)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHH
Confidence 456667777777665555555544444322 233333333333322111 678
Q ss_pred HHHHHHHHcCCCH------HHHHHHHHHHHHCCC-CccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 58 NEMIHGYAENEYV------EQAISLYKDIIASGV-KHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 58 ~~li~~~~~~g~~------~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
.+++.-+|..... ++..+.+.+...... .-|..--...|+++...|.......+...+
T Consensus 422 ~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l 486 (574)
T smart00638 422 GSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYL 486 (574)
T ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhc
Confidence 8888877776542 445554444332211 123333355689999999877665555544
No 434
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.37 E-value=2.2e+02 Score=20.19 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHCC----CCccHHHHHHHHHhhc-CCCchHHHHHHHHhcccc
Q 041561 70 VEQAISLYKDIIASG----VKHDGVTFVAILTPCS-HSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g----~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~m~~~ 118 (156)
+..|.+.|.+-.+.. -.-+..+..-|+.-+. +.|+.++|.+.|..+...
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 556777777766543 2335566666676666 899999999999999544
No 435
>cd08304 DD_superfamily The Death Domain Superfamily of protein-protein interaction domains. The Death Domain (DD) superfamily includes the DD, Pyrin, CARD (Caspase activation and recruitment domain) and DED (Death Effector Domain) families. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. They are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways including those that impact innate immunity, inflammation, differentiation, and cancer.
Probab=26.16 E-value=1e+02 Score=17.38 Aligned_cols=33 Identities=15% Similarity=0.053 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHH
Q 041561 72 QAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAE 108 (156)
Q Consensus 72 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 108 (156)
.+.++++.+..+| ..++..++..+.+.|..+.+
T Consensus 34 ~a~~ll~~l~~~~----~~a~~~~~~vL~~~~~~~la 66 (69)
T cd08304 34 AANELLNILESQY----NHTLQLLFALFEDLGLHNLA 66 (69)
T ss_pred HHHHHHHHHHHhC----cchHHHHHHHHHHcCCHhHH
Confidence 5667777776666 55666666666666655444
No 436
>PF09520 RE_TdeIII: Type II restriction endonuclease, TdeIII; InterPro: IPR019045 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease MjaII, which recognises the double-stranded sequence GGNCC, but the cleavage site is unknown. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=26.05 E-value=94 Score=22.77 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 21 LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
.+...++.+.+...+-.|+...++-.++..++.+
T Consensus 101 ~~~I~~i~~~l~~~~~~~~~~~~~~~i~~~~~~~ 134 (251)
T PF09520_consen 101 QEKIDEIIDDLKSKGNKPNKPSEIEEIREICKKG 134 (251)
T ss_pred HHHHHHHHHHHHhcccCCCcccHHHHHHHHHhcC
Confidence 4556667777776778899999998888888777
No 437
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.03 E-value=2.8e+02 Score=20.68 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=32.6
Q ss_pred HHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCC-CChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 92 FVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYK-DDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~-pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
|.+.|-.+....|+..|+..++.-..-.++ .. -|.++..-||.+| ..|+.|+..+|
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f-------~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAF-------LKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccc-------cChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 444444445556777777776653111111 12 2678888888887 45688877665
No 438
>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]
Probab=25.97 E-value=1.4e+02 Score=22.11 Aligned_cols=42 Identities=14% Similarity=0.221 Sum_probs=32.8
Q ss_pred HHHHHHHHHHH-HCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 71 EQAISLYKDII-ASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 71 ~~a~~~~~~m~-~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
++..+.|.... .+|+.++..+| |.+|...++..+=...++.+
T Consensus 215 e~Lqd~fh~fLEeRGI~esl~~F---L~~ym~~Kd~rEYl~Wlksv 257 (263)
T KOG2536|consen 215 EELQDSFHRFLEERGIKESLASF---LHAYMKNKDSREYLRWLKSV 257 (263)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHH---HHHHHhhhhHHHHHHHHHHH
Confidence 45566676665 48999988887 99999999888777777766
No 439
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=25.95 E-value=71 Score=21.73 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHH
Q 041561 21 LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYA 65 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~ 65 (156)
..+++.+-..+.+.|+.||....+..++ +..|+..+...+.
T Consensus 31 ~~ea~~~a~~L~~~~~~~D~VL~Spa~R----a~QTae~v~~~~~ 71 (163)
T COG2062 31 RKEAELVAAWLAGQGVEPDLVLVSPAVR----ARQTAEIVAEHLG 71 (163)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEeChhHH----HHHHHHHHHHhhC
Confidence 4789999999999999999865555443 3467777777766
No 440
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=25.90 E-value=93 Score=25.31 Aligned_cols=40 Identities=23% Similarity=0.212 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHCCCCccHHH----HHHHHHhhcCCC-chHHHHHH
Q 041561 72 QAISLYKDIIASGVKHDGVT----FVAILTPCSHSG-LVYAEVEI 111 (156)
Q Consensus 72 ~a~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~-~~~~a~~~ 111 (156)
.+.++|.++.++|+.||..| -.--+++|.=.| .++++.++
T Consensus 234 Naadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~l 278 (545)
T TIGR01228 234 NAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKL 278 (545)
T ss_pred cHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHH
Confidence 35666677776666666554 222333454444 44444443
No 441
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=25.65 E-value=1.5e+02 Score=17.41 Aligned_cols=30 Identities=13% Similarity=0.027 Sum_probs=21.2
Q ss_pred cCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhh
Q 041561 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPC 99 (156)
Q Consensus 66 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 99 (156)
..-..++|.++++.+...| ...|..+++++
T Consensus 41 ~~T~~~kar~Lld~l~~kG----~~A~~~F~~~L 70 (82)
T cd08330 41 EKTNQEKMRKLFSFVRSWG----ASCKDIFYQIL 70 (82)
T ss_pred CCCcHHHHHHHHHHHHccC----HHHHHHHHHHH
Confidence 4556788888888887766 55666666665
No 442
>PRK05414 urocanate hydratase; Provisional
Probab=25.42 E-value=93 Score=25.40 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHCCCCccHHH----HHHHHHhhcCCC-chHHHHHH
Q 041561 71 EQAISLYKDIIASGVKHDGVT----FVAILTPCSHSG-LVYAEVEI 111 (156)
Q Consensus 71 ~~a~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~-~~~~a~~~ 111 (156)
-.+-++|.++.++|+.||..| -.-.+++|.=.| .++++.++
T Consensus 242 GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee~~~l 287 (556)
T PRK05414 242 GNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEEAAEL 287 (556)
T ss_pred ccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHHHHHH
Confidence 345667777777777766654 222233555444 44444444
No 443
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=25.37 E-value=2.2e+02 Score=20.86 Aligned_cols=30 Identities=3% Similarity=-0.062 Sum_probs=22.6
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDG 35 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g 35 (156)
.+||.+=-.+...|+++.|...|+...+..
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD 129 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELD 129 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence 456666666778899999999998887643
No 444
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=25.34 E-value=1.6e+02 Score=17.58 Aligned_cols=49 Identities=12% Similarity=0.049 Sum_probs=33.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHH-CCCCccHHHHHHHHHhhcCCCchHHH
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIA-SGVKHDGVTFVAILTPCSHSGLVYAE 108 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a 108 (156)
....+.......|..+.|..+++.+.+ .| .--|..+++|+-+.|.-+.|
T Consensus 36 ~~e~I~a~~~~~g~~~aa~~Ll~~L~~~r~----~~wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 36 DKEQILAEERNKGNIAAAEELLDRLERCDK----PGWFQAFLDALRRTGNDDLA 85 (88)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHhcc----CCcHHHHHHHHHHcCCccHH
Confidence 344555555556899999999999987 43 23466678887777764444
No 445
>PF07864 DUF1651: Protein of unknown function (DUF1651); InterPro: IPR012447 The proteins in this entry have not been characterised.
Probab=25.16 E-value=80 Score=18.18 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHCCCCcc
Q 041561 69 YVEQAISLYKDIIASGVKHD 88 (156)
Q Consensus 69 ~~~~a~~~~~~m~~~g~~p~ 88 (156)
..++|.+.+.+|++.|-.+.
T Consensus 51 ~~~~A~e~W~~L~~~GW~~~ 70 (75)
T PF07864_consen 51 TREEARELWKELQKTGWRRC 70 (75)
T ss_pred EHHHHHHHHHHHHHcCCEEC
Confidence 47899999999999986543
No 446
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=25.15 E-value=62 Score=16.76 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=14.0
Q ss_pred HHHHHHHHHhCCCCchHH
Q 041561 25 RQILTRIVKDGYGNDIFV 42 (156)
Q Consensus 25 ~~~~~~m~~~g~~~~~~~ 42 (156)
.++..++.+.|+.|-+.+
T Consensus 9 ~eL~~~L~~~G~~~gPIt 26 (44)
T smart00540 9 AELRAELKQYGLPPGPIT 26 (44)
T ss_pred HHHHHHHHHcCCCCCCcC
Confidence 567888999998876644
No 447
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=25.15 E-value=29 Score=19.00 Aligned_cols=29 Identities=3% Similarity=-0.109 Sum_probs=24.2
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHhHHH
Q 041561 19 SSLFLGRQILTRIVKDGYGNDIFVGSAPI 47 (156)
Q Consensus 19 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li 47 (156)
|--++...+|..|..+.+.|....||=.|
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L 34 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSL 34 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeH
Confidence 55678889999999999999997777666
No 448
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=25.01 E-value=3.9e+02 Score=21.96 Aligned_cols=37 Identities=5% Similarity=-0.011 Sum_probs=27.7
Q ss_pred HhcCCCchHHHHHHHHH---HHHhCCCC-chHHHhHHHHHh
Q 041561 14 SCAKLSSLFLGRQILTR---IVKDGYGN-DIFVGSAPINIY 50 (156)
Q Consensus 14 ~~~~~~~~~~a~~~~~~---m~~~g~~~-~~~~~~~li~~~ 50 (156)
.|+..|+++...++|.. |++..+.| ++.|.++|++..
T Consensus 346 vyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFa 386 (615)
T KOG0508|consen 346 VYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFA 386 (615)
T ss_pred eecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHH
Confidence 46789999999999985 67777765 666666666543
No 449
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.98 E-value=1.6e+02 Score=25.96 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=26.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
..|..|+.-|...|+.++|+++|.+...
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 6799999999999999999999999875
No 450
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=24.91 E-value=1.4e+02 Score=16.88 Aligned_cols=33 Identities=15% Similarity=0.191 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCC
Q 041561 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 103 (156)
....+++.++++.+..+| ..+|..+++++-+.+
T Consensus 40 ~~~~~k~~~Lld~l~~kg----~~af~~F~~~L~~~~ 72 (80)
T cd01671 40 STRQDKARKLLDILPRKG----PKAFQSFLQALQETD 72 (80)
T ss_pred CChHHHHHHHHHHHHhcC----hHHHHHHHHHHHhcC
Confidence 336788888888888777 667777788776555
No 451
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=24.90 E-value=4e+02 Score=21.99 Aligned_cols=111 Identities=13% Similarity=0.240 Sum_probs=58.2
Q ss_pred HHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCC---CCccHHHHHHHHHhhcCCC
Q 041561 27 ILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASG---VKHDGVTFVAILTPCSHSG 103 (156)
Q Consensus 27 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~~ 103 (156)
+..-+.+.++.|++.+- .+-.+++.+......-+|-..+|..-.... ..-|.--+-..++=+.+.|
T Consensus 192 VlrtL~e~dLlP~IIsG-----------sS~GaivAsl~~v~~~eEl~~Ll~~~~~~~~~if~dd~~n~~~~ikr~~~~G 260 (543)
T KOG2214|consen 192 VLRTLLEQDLLPNIISG-----------SSAGAIVASLVGVRSNEELKQLLTNFLHSLFNIFQDDLGNLLTIIKRYFTQG 260 (543)
T ss_pred HHHHHHHccccchhhcC-----------CchhHHHHHHHhhcchHHHHHHhccchHhhhhhhcCcchhHHHHHHHHHhcc
Confidence 33444455555655322 333455555555555555555554433221 1222223444555556666
Q ss_pred chHHHHHHHHhcccccccCCC--------------------------c--CCCCCCChhhHHHHHHHHhhcCCHh
Q 041561 104 LVYAEVEIFNSMEHDHEVKPK--------------------------C--LMPYKDDLVVWGDLVSSCQVHSNVR 150 (156)
Q Consensus 104 ~~~~a~~~~~~m~~~~~~~~~--------------------------c--~~~~~pd~~~~~~li~~~~~~g~~~ 150 (156)
.+.+-..+-..|++..| .-+ | -. -.||+..|.++..+|+.-|-++
T Consensus 261 ~~~Di~~l~~~~~~~~~-~lTFqEAY~rTGrIlNItV~p~s~~e~P~lLNyl-TaPnVLIWSAV~aScs~pgif~ 333 (543)
T KOG2214|consen 261 ALFDISHLACVMKKRLG-NLTFQEAYDRTGRILNIVVPPSSKSEPPRLLNYL-TAPNVLIWSAVCASCSVPGIFE 333 (543)
T ss_pred hHHHHHHHHHHHHHHhc-chhHHHHHHhhCceEEEEECccccCCChhHhhcc-CCCceehhHHHHHhcccccccC
Confidence 65555555555533333 111 1 11 3589999999999998777654
No 452
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=24.87 E-value=4e+02 Score=21.98 Aligned_cols=89 Identities=13% Similarity=0.107 Sum_probs=48.2
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..|..-+.-+..+++.. ....+++..+-...+...-..++.-|.+.|-.+.+.++...+-.+. + ...
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~---------~--~~~ 439 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL---------L--KEG 439 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH---------H--HHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------H--HCC
Confidence 56777776666655332 5556666655556667777888899998888888888888774432 1 344
Q ss_pred hHHHHHHHHhhcCCHhHHhhhC
Q 041561 135 VWGDLVSSCQVHSNVRLAKKAA 156 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~~ 156 (156)
-|..-|.-+.+.|+.+...+++
T Consensus 440 ~~g~AL~~~~ra~d~~~v~~i~ 461 (566)
T PF07575_consen 440 RYGEALSWFIRAGDYSLVTRIA 461 (566)
T ss_dssp HHHHHHHHHH------------
T ss_pred CHHHHHHHHHHCCCHHHHHHHH
Confidence 5667777777888777666553
No 453
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=24.68 E-value=77 Score=18.92 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHhCCCCchH
Q 041561 21 LFLGRQILTRIVKDGYGNDIF 41 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~~~~~~ 41 (156)
++..+...++++..|+.||..
T Consensus 11 l~~ie~~inELk~dG~ePDiv 31 (85)
T PF08967_consen 11 LELIEEKINELKEDGFEPDIV 31 (85)
T ss_dssp HHHHHHHHHHHHHTT----EE
T ss_pred HHHHHHHHHHHHhcCCCCCEE
Confidence 345667778888999999984
No 454
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=24.47 E-value=1.7e+02 Score=17.75 Aligned_cols=56 Identities=11% Similarity=0.108 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 89 GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
....-.+-.-|-+.|-.+.+.+++..++...| ...|...|+.++-.++....|+.+
T Consensus 32 d~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg-----------~~Atv~~Lv~AL~~c~l~~lAe~l 87 (90)
T cd08780 32 DPAIDNLAYEYDREGLYEQAYQLLRRFIQSEG-----------KKATLQRLVQALEENGLTSLAEDL 87 (90)
T ss_pred hhHHHHHHhhcccccHHHHHHHHHHHHHHhcc-----------ccchHHHHHHHHHHccchHHHHHH
Confidence 34444555677788899999999999966543 348889999999998888777654
No 455
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=24.41 E-value=78 Score=15.04 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHhCCCCchH
Q 041561 21 LFLGRQILTRIVKDGYGNDIF 41 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~~~~~~ 41 (156)
.+.|.++...+.+.|-.|+..
T Consensus 11 ~d~a~rv~~f~~~ngRlPnyV 31 (33)
T PF09373_consen 11 LDMASRVNNFYESNGRLPNYV 31 (33)
T ss_pred HHHHHHHHHHHHHcCCCCCee
Confidence 466788888888888888764
No 456
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=24.40 E-value=2.8e+02 Score=20.12 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=16.2
Q ss_pred hcCCCchHHHHHHHHHHHH
Q 041561 15 CAKLSSLFLGRQILTRIVK 33 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~ 33 (156)
+.+.++.++|++++....+
T Consensus 15 l~K~~~yeeAkqvL~yFs~ 33 (233)
T TIGR02878 15 LTKQARYEEAKQVLEYFSK 33 (233)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 5789999999999988754
No 457
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.26 E-value=2.9e+02 Score=20.28 Aligned_cols=65 Identities=9% Similarity=-0.024 Sum_probs=36.4
Q ss_pred chHHHHHHHHHHHHhCC----CCchHHHhHHHHHhhhcc------------------chHHHHHHHHHcCCCHHHHHHHH
Q 041561 20 SLFLGRQILTRIVKDGY----GNDIFVGSAPINIYCNCG------------------VTWNEMIHGYAENEYVEQAISLY 77 (156)
Q Consensus 20 ~~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~~------------------~~~~~li~~~~~~g~~~~a~~~~ 77 (156)
-.+.+.+.|+.....+- ..++..-..++....+.| ..-..++.+.+...+++...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 36778888888776422 345555566666666665 23345555666666666666666
Q ss_pred HHHHHCC
Q 041561 78 KDIIASG 84 (156)
Q Consensus 78 ~~m~~~g 84 (156)
+.....+
T Consensus 225 ~~~l~~~ 231 (324)
T PF11838_consen 225 DLLLSND 231 (324)
T ss_dssp HHHHCTS
T ss_pred HHHcCCc
Confidence 6665543
No 458
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. In eukaryotes, transcription initiation of all protein encoding genes involves the polymerase II system. This sytem is modulated by both general and specific transcription factors. The general factors (which include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIG and TFIIH) operate through common promoter elements, such as the TATA box. Transcription factor IIB (TFIIB) is of central importance in transcription of class II genes. It associates with TFIID-TFIIA bound to DNA (the DA complex) to form a ternary TFIID-IIA-IBB (DAB) complex, which is recognised by RNA polymerase II [, ]. TFIIB comprises ~315-340 residues and contains an imperfect C-terminal repeat of a 75-residue domain that may contribute to the symmetry of the folded protein. The basal archaeal transcription machinery resembles that of the eukaryotic polymerase II system and includes a homologue of TFIIB []. This entry represents a cyclin-like domain which is found repeated in the C-terminal region of a variety of eukaryotic TFIIB's and their archaeal counterparts. These domains individually form the typical cyclin fold, and in the transcription complex they straddle the C-terminal region of the TATA-binding protein - an interaction essential for the formation of the transcription initiation complex [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2PHG_A 1C9B_Q 1TFB_A 1VOL_A 3K7A_M 1AIS_B 1D3U_B.
Probab=23.82 E-value=1.4e+02 Score=16.63 Aligned_cols=43 Identities=23% Similarity=0.336 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHC----CCCccHHHHHHHHHhhcCCCchHHHHHHH
Q 041561 70 VEQAISLYKDIIAS----GVKHDGVTFVAILTPCSHSGLVYAEVEIF 112 (156)
Q Consensus 70 ~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 112 (156)
.+.|.++|+.+.+. |-.|+...-.++.-+|-..+..-...++-
T Consensus 15 ~~~A~~i~~~~~~~~~~~Gr~~~~iaAA~iY~acr~~~~~~t~~eIa 61 (71)
T PF00382_consen 15 RERAKEIYKKAQERGLLKGRSPESIAAACIYLACRLNGVPRTLKEIA 61 (71)
T ss_dssp HHHHHHHHHHHHHTTTSTTS-HHHHHHHHHHHHHHHTTSSSSHHHHH
T ss_pred HHHHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHcCCCcCHHHHH
Confidence 46789999998775 55788888888888887766554444443
No 459
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=23.67 E-value=1.8e+02 Score=17.47 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHhh
Q 041561 69 YVEQAISLYKDIIASGVKHDGVTFVAILTPC 99 (156)
Q Consensus 69 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 99 (156)
+-++|..+++.+..+|. ..|.++++++
T Consensus 48 r~~ka~~LLdiL~~rG~----~Af~~F~~aL 74 (86)
T cd08785 48 RANRTGRLLDILATRGK----RGYVAFLESL 74 (86)
T ss_pred HHHHHHHHHHHHHhcCc----chHHHHHHHH
Confidence 34888899998888873 4566666665
No 460
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.63 E-value=2.5e+02 Score=25.30 Aligned_cols=74 Identities=11% Similarity=0.138 Sum_probs=44.3
Q ss_pred HHHHHhcCCCc-hHHHHHHHHHHHH---hCCCC-ch--HHHhHHHHHhhhcc---chHHHHHHHHHcCCCHHHHHHHHHH
Q 041561 10 TVLSSCAKLSS-LFLGRQILTRIVK---DGYGN-DI--FVGSAPINIYCNCG---VTWNEMIHGYAENEYVEQAISLYKD 79 (156)
Q Consensus 10 ~ll~~~~~~~~-~~~a~~~~~~m~~---~g~~~-~~--~~~~~li~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~ 79 (156)
.++.++.+.|- .+.|+++|+.+.+ .|+.- -. +..-+.-.+|.|+. .-|.++|+. ..|+.++...++.+
T Consensus 718 ~Fi~ga~~~G~~~~~a~~i~~~i~~Fa~YgFnksHa~aYa~iay~~AylK~hyP~eF~~a~l~~--~~~~~~k~~~~~~e 795 (1022)
T TIGR00594 718 KFVEGAEKNGYDPEIAENLFDLIEKFAGYGFNKSHAAAYGMISYQTAYLKANYPAEFMAALLTS--EINDIEKVAVYIAE 795 (1022)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCcccccchHhHHHHHHHHHHhhccHHHhHhheeec--CCCCchHHHHHHHH
Confidence 34556665553 3457777777754 44432 22 33333455666665 334455554 23677888999999
Q ss_pred HHHCCC
Q 041561 80 IIASGV 85 (156)
Q Consensus 80 m~~~g~ 85 (156)
+++.|+
T Consensus 796 ~~~~gi 801 (1022)
T TIGR00594 796 AKKMGI 801 (1022)
T ss_pred HHHCCC
Confidence 999985
No 461
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=23.46 E-value=1.8e+02 Score=17.42 Aligned_cols=57 Identities=9% Similarity=0.011 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCC
Q 041561 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG 103 (156)
Q Consensus 24 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 103 (156)
+..+++.+.+.|+ .+-.-.-...+...+.++|..+++.+. .| ...|.++++++-..+
T Consensus 18 ~~~l~d~L~s~~I------------------Lt~~d~EeI~~~~t~~~qa~~LLdiL~-rG----p~Af~~F~esL~~~~ 74 (84)
T cd08810 18 ADRHFDYLRSKRI------------------LTRDDCEEISCRTTSRKQAGKLLDILA-EN----PKGLDALIESIRRER 74 (84)
T ss_pred HHHHHHHHHHcCC------------------CCHHHHHHHhccCCcHHHHHHHHHHHh-hC----chHHHHHHHHHHHcc
Confidence 3446777777665 222333333446667888888888887 66 567888888876544
No 462
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.05 E-value=1.7e+02 Score=17.36 Aligned_cols=42 Identities=5% Similarity=0.067 Sum_probs=32.2
Q ss_pred CchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 103 GLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 103 ~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
+..+.+.+++....++. ....|...|+.++...|.-+-|..+
T Consensus 44 ~~~eq~~~mL~~W~~r~-----------g~~AT~~~L~~aL~~~~~~diae~l 85 (86)
T cd08318 44 DIKMQAKQLLVAWQDRE-----------GSQATPETLITALNAAGLNEIAESL 85 (86)
T ss_pred CHHHHHHHHHHHHHHhc-----------CccccHHHHHHHHHHcCcHHHHHhh
Confidence 34577788888885553 3557899999999999998888764
No 463
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=23.02 E-value=3.4e+02 Score=20.55 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=22.1
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCccHH
Q 041561 63 GYAENEYVEQAISLYKDIIASGVKHDGV 90 (156)
Q Consensus 63 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 90 (156)
-....|+..+|.++++.+...|..|=..
T Consensus 217 dail~g~~~~a~~~l~~L~~~ge~p~~i 244 (334)
T COG1466 217 DALLKGDVKKALRLLRDLLLEGEEPLKL 244 (334)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 3446789999999999999988776443
No 464
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=22.98 E-value=45 Score=27.35 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=23.4
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc------chHHHHHHHHHcCCC
Q 041561 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------VTWNEMIHGYAENEY 69 (156)
Q Consensus 9 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~------~~~~~li~~~~~~g~ 69 (156)
.-+++.|.+.|-.+.+..+...+-+.-+ ...-|-.-|..+.+++ ..-+.+++.|+..|.
T Consensus 409 ~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~~~ 473 (566)
T PF07575_consen 409 EKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNNGE 473 (566)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcCCC
Confidence 4466777777777777777776644322 2233445555666666 222345566666664
No 465
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=22.97 E-value=2.9e+02 Score=19.99 Aligned_cols=57 Identities=19% Similarity=0.287 Sum_probs=35.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCc-----cHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 58 NEMIHGYAENEYVEQAISLYKDIIASGVKH-----DGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
|.|+=-|.-+..+.+|-+.|.. +.|+.| +...=..-|+.....|++++|.+...++.
T Consensus 30 n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 30 NRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 4444444444445556666644 455555 22333346777789999999999888873
No 466
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=22.96 E-value=2e+02 Score=17.96 Aligned_cols=82 Identities=17% Similarity=0.083 Sum_probs=43.2
Q ss_pred HHHHHHHHHHH-HhCCCC-chHHHhHHHHHhhhcc--------chHHHHHHHHHcCCCHHHHHHHHHHHH--HCCCCccH
Q 041561 22 FLGRQILTRIV-KDGYGN-DIFVGSAPINIYCNCG--------VTWNEMIHGYAENEYVEQAISLYKDII--ASGVKHDG 89 (156)
Q Consensus 22 ~~a~~~~~~m~-~~g~~~-~~~~~~~li~~~~~~~--------~~~~~li~~~~~~g~~~~a~~~~~~m~--~~g~~p~~ 89 (156)
+.|+..+..++ ..|+.| |+..--++-....... ..=+.-|+-+.-.|+.++....+=.+. ..+..+|.
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~~~~~d~~~E~~~~T~~Ge~~~i~~alLkq~~~~~~~~~d~ 84 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVADIKLDGNVEIDWYTFAGEYGDIYLALLKQRCVADGPELDD 84 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCccccCCCCCeEEEeeeecCchHHHHHHHHHHHHHccCCCCCH
Confidence 56777888885 478888 6654444444433322 000000001111266665555443333 45777788
Q ss_pred HHHHHHHHhhcCCC
Q 041561 90 VTFVAILTPCSHSG 103 (156)
Q Consensus 90 ~t~~~ll~~~~~~~ 103 (156)
..+...++++.+.|
T Consensus 85 e~l~~~~~lHl~rG 98 (105)
T TIGR03184 85 ESLAKALNLHVHRG 98 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 88877777765443
No 467
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.94 E-value=5.3e+02 Score=22.80 Aligned_cols=109 Identities=8% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHH
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTF 92 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 92 (156)
..+-+.|+.++|..-+-+-... .-=..+|.=|-...++.+--.+++.+.++|+. +...-
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~--------------------le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dht 434 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF--------------------LEPSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHT 434 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc--------------------CChHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhH
Q ss_pred HHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhh--HHHHHHHHhhcCCHhHHhhhC
Q 041561 93 VAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVV--WGDLVSSCQVHSNVRLAKKAA 156 (156)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~--~~~li~~~~~~g~~~~a~~~~ 156 (156)
+.|+.+|.+.++.++-..+.+.- .-..+. ....+..+...+-.++|..+|
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~--------------~~g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKC--------------DKGEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcC--------------CCcceeeeHHHHHHHHHHhChHHHHHHHH
No 468
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.50 E-value=1.7e+02 Score=23.14 Aligned_cols=94 Identities=10% Similarity=0.056 Sum_probs=56.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKH 87 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 87 (156)
+.-+.-++.+.+++..|.+--+.....+- +|+ .++.|.| .++...|+++.|+..|+.+++ +.|
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~-------KALyRrG-------~A~l~~~e~~~A~~df~ka~k--~~P 322 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDP-NNV-------KALYRRG-------QALLALGEYDLARDDFQKALK--LEP 322 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCC-Cch-------hHHHHHH-------HHHHhhccHHHHHHHHHHHHH--hCC
Confidence 33444455566666666555555444321 121 1222222 345567789999999999987 788
Q ss_pred cHHHHHHHHHhhcC-CC-chHHHHHHHHhcccc
Q 041561 88 DGVTFVAILTPCSH-SG-LVYAEVEIFNSMEHD 118 (156)
Q Consensus 88 ~~~t~~~ll~~~~~-~~-~~~~a~~~~~~m~~~ 118 (156)
+....+.=|..|.+ .. ..+..+++|..|-..
T Consensus 323 ~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 323 SNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88888887777763 33 344456777777443
No 469
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.46 E-value=6.3e+02 Score=25.31 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHD-GVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
...-|--....|+++.|..-|+.+.+. .|+ ..+++-+++..-..+.++...-..+..
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcch
Confidence 344455566778888888888888754 344 557777776666777777666655544
No 470
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.42 E-value=4.3e+02 Score=21.47 Aligned_cols=70 Identities=9% Similarity=0.055 Sum_probs=39.7
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHH
Q 041561 19 SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVT 91 (156)
Q Consensus 19 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 91 (156)
|++..+...++.+...| ....+...+-....... ...-.++++. ..|+.++|..+++.+...|..|....
T Consensus 212 G~lr~al~~Ldkl~~~~--~~~It~~~V~~~lg~~~~~~vf~Li~ai-~~~d~~~al~~l~~L~~~g~~~~~iL 282 (486)
T PRK14953 212 GGMRDAASLLDQASTYG--EGKVTIKVVEEFLGIVSQESVRKFLNLL-LESDVDEAIKFLRTLEEKGYNLNKFW 282 (486)
T ss_pred CCHHHHHHHHHHHHHhc--CCCcCHHHHHHHhCCCCHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 66666666666654443 11223333332222222 2233455554 45789999999999998887776543
No 471
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=22.40 E-value=2e+02 Score=17.65 Aligned_cols=38 Identities=8% Similarity=0.024 Sum_probs=22.9
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 16 AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
++.|++++|++.+++-.+. +.---...+.||..-++.+
T Consensus 26 a~~g~fe~A~~~l~ea~~~-l~~AH~~qt~liq~ea~g~ 63 (97)
T cd00215 26 AKEGDFAEAEELLEEANDS-LNEAHHAQTKLLQQEASGE 63 (97)
T ss_pred HHcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCC
Confidence 6889999999998887553 1112233345555555444
No 472
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=22.23 E-value=1.1e+02 Score=17.31 Aligned_cols=41 Identities=12% Similarity=0.029 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHH
Q 041561 70 VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIF 112 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 112 (156)
.+.+.+++..-... .+...|...|+.++-+.|.-+.+..+-
T Consensus 40 ~~~~~~~L~~W~~~--~~~~at~~~L~~aL~~~~~~d~~~~i~ 80 (83)
T PF00531_consen 40 REQTYEMLQRWRQR--EGPNATVDQLIQALRDIGRNDLAEKIE 80 (83)
T ss_dssp HHHHHHHHHHHHHH--HGSTSSHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHCCcHHHHHHHH
Confidence 35555555555544 344556777788887777777666553
No 473
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=22.20 E-value=1.9e+02 Score=17.22 Aligned_cols=52 Identities=8% Similarity=0.083 Sum_probs=31.2
Q ss_pred HcCCCHHHHHHHHHHH----HHCCCCcc--HHHHH--HHHHhhcCCCchHHHHHHHHhcc
Q 041561 65 AENEYVEQAISLYKDI----IASGVKHD--GVTFV--AILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m----~~~g~~p~--~~t~~--~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
.+.|++.+|.+-+.+. ...+..+. ...+. .+-......|+.++|.+.+++-.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4678888775544444 33333331 22232 23345557899999999888774
No 474
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.19 E-value=3.7e+02 Score=20.65 Aligned_cols=30 Identities=10% Similarity=0.300 Sum_probs=20.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCccHH
Q 041561 60 MIHGYAENEYVEQAISLYKDIIASGVKHDGV 90 (156)
Q Consensus 60 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 90 (156)
++++.. .++.+++.++++++.+.|..|...
T Consensus 252 l~~ai~-~~~~~~~~~~~~~l~~~g~~~~~i 281 (363)
T PRK14961 252 LTDALL-KKDSKKTMLLLNKISSIGIEWENI 281 (363)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 344443 477888888888888877766654
No 475
>PRK10304 ferritin; Provisional
Probab=22.07 E-value=2.6e+02 Score=18.88 Aligned_cols=91 Identities=12% Similarity=0.098 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHhCCCCch-------HHHhHHHHHhhhcc-------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 21 LFLGRQILTRIVKDGYGNDI-------FVGSAPINIYCNCG-------VTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
.+.|.++++.+...|-.|+. ..|.++...+-..= ..++.++..+.+.+|+.- ..+++.+.+..+.
T Consensus 51 ~~HA~kl~~~i~~rgg~~~~~~i~~p~~~~~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t-~~fl~~fl~EQve 129 (165)
T PRK10304 51 MTHMQRLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPT-FNFLQWYVSEQHE 129 (165)
T ss_pred HHHHHHHHHHHHHcCCCeeeCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhH-HHHHHHHHHHHHH
Confidence 56789999999887754433 34555544444332 667777777777777654 3445555443221
Q ss_pred ccHHHHHHHHHhhcCCCchHHHHHHHH
Q 041561 87 HDGVTFVAILTPCSHSGLVYAEVEIFN 113 (156)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~ 113 (156)
.......++.-..+.|+-..+.-.++
T Consensus 130 -Ee~~~~~l~~~l~~~~~~g~~~y~~D 155 (165)
T PRK10304 130 -EEKLFKSIIDKLSLAGKSGEGLYFID 155 (165)
T ss_pred -HHHHHHHHHHHHHhhCCCcchHHHHh
Confidence 24445555555555554433444443
No 476
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=22.01 E-value=1.6e+02 Score=16.33 Aligned_cols=49 Identities=4% Similarity=0.012 Sum_probs=32.6
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhc-----CCCchHHHHHHH
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCS-----HSGLVYAEVEIF 112 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-----~~~~~~~a~~~~ 112 (156)
+...|++-+|-++++++=..-..|....+-.+|+..+ +.|+.+.|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 3457889999999998854433446667777776654 467777777654
No 477
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=21.76 E-value=5.2e+02 Score=22.37 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=42.3
Q ss_pred chHHHHHHHHHcCCCHHH--HHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 55 VTWNEMIHGYAENEYVEQ--AISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~--a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
..|++.=++|.+-.+..- ...=+++|+++|-.|+.... -.-|+-.|.+.+|.++|.+-
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc
Confidence 567888888888777543 23335667788999998765 45567788999999988754
No 478
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=21.54 E-value=5.3e+02 Score=22.25 Aligned_cols=104 Identities=11% Similarity=0.044 Sum_probs=0.0
Q ss_pred CCCCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCC-------CchHHHhHHHHH----hhhccchHHHHHHHHHc---
Q 041561 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYG-------NDIFVGSAPINI----YCNCGVTWNEMIHGYAE--- 66 (156)
Q Consensus 1 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-------~~~~~~~~li~~----~~~~~~~~~~li~~~~~--- 66 (156)
+.-+..+...+.+.. .||++.++.+++.+...... .+.......+.- |-+.|...-..|+++-+
T Consensus 193 v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksir 270 (725)
T PRK13341 193 VDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLR 270 (725)
T ss_pred cCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHh
Q ss_pred CCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchH
Q 041561 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 106 (156)
.++++.|+..+..|.+.|..|....=..++-+.-..|..+
T Consensus 271 gsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdiglad 310 (725)
T PRK13341 271 GSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLAD 310 (725)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCC
No 479
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=21.51 E-value=3.9e+02 Score=20.64 Aligned_cols=73 Identities=8% Similarity=0.192 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcC--
Q 041561 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH-- 101 (156)
Q Consensus 24 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-- 101 (156)
-.++|+.|.+.++.|.-+.+. =+--.+++.=.+.++..+|+.+...... |-.++..||.
T Consensus 262 D~EL~~~L~~~~i~PqfyaFR--------------WitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsml 322 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFR--------------WITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSML 322 (370)
T ss_pred hHHHHHHHHhcCCCccchhHH--------------HHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHH
Confidence 456777777778888774432 2223345666788889999888654333 6666666654
Q ss_pred --------CCchHHHHHHHHhc
Q 041561 102 --------SGLVYAEVEIFNSM 115 (156)
Q Consensus 102 --------~~~~~~a~~~~~~m 115 (156)
.||...-.++++..
T Consensus 323 il~Re~il~~DF~~nmkLLQ~y 344 (370)
T KOG4567|consen 323 ILVRERILEGDFTVNMKLLQNY 344 (370)
T ss_pred HHHHHHHHhcchHHHHHHHhcC
Confidence 45665555555543
No 480
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=21.42 E-value=4e+02 Score=20.94 Aligned_cols=55 Identities=7% Similarity=-0.108 Sum_probs=38.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHH----HHhhc--CCCchHHHHHHHHh
Q 041561 60 MIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI----LTPCS--HSGLVYAEVEIFNS 114 (156)
Q Consensus 60 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l----l~~~~--~~~~~~~a~~~~~~ 114 (156)
...-+.+.+++..|.++|+++......|+...+-.. ..+|. ..-+.++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 444567789999999999999988766666554333 34443 25577788888874
No 481
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=21.15 E-value=2.9e+02 Score=25.33 Aligned_cols=65 Identities=11% Similarity=0.146 Sum_probs=40.8
Q ss_pred hHHHHHHHHHcCCC-HHHHHHHHHHHHH-CCCCccHHH----------------------HHHHHHhhcCCCchHHHHHH
Q 041561 56 TWNEMIHGYAENEY-VEQAISLYKDIIA-SGVKHDGVT----------------------FVAILTPCSHSGLVYAEVEI 111 (156)
Q Consensus 56 ~~~~li~~~~~~g~-~~~a~~~~~~m~~-~g~~p~~~t----------------------~~~ll~~~~~~~~~~~a~~~ 111 (156)
.-...+.++.++|- .+.|.++|+.|.+ .|+..|..+ |.++++. ..|+.++...+
T Consensus 726 ~r~~Fi~ga~~~G~~~~~A~~if~~i~~Fa~YgFNKSHA~AYa~iaYqtAyLKahYP~eF~aAlLs~--~~~~~~k~~~~ 803 (1170)
T PRK07374 726 HRGIFVEGASKRGVDEKVADELFDQMVLFAEYCFNKSHSTAYGAVTYQTAYLKAHYPVAYMAALLTV--NAGSSDKVQRY 803 (1170)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhc--CCCCchHHHHH
Confidence 34556778888874 5678999999986 454333322 2233332 34777777788
Q ss_pred HHhcccccccCC
Q 041561 112 FNSMEHDHEVKP 123 (156)
Q Consensus 112 ~~~m~~~~~~~~ 123 (156)
+.++ ++.|+.-
T Consensus 804 i~Ea-k~~GI~v 814 (1170)
T PRK07374 804 ISNC-NSMGIEV 814 (1170)
T ss_pred HHHH-HHCCCEE
Confidence 8888 6666533
No 482
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=20.94 E-value=2.3e+02 Score=17.89 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=39.3
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCC------------------CccHHHHHHHHHhhcCCCchHHHHHHHHh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGV------------------KHDGVTFVAILTPCSHSGLVYAEVEIFNS 114 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 114 (156)
++-..|-..++.+ .+-+..++++|.+.|. .+-...+...+..+...|+++.|.++++.
T Consensus 20 vtl~elA~~l~cS--~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~g~~~~a~~ll~~ 95 (115)
T PF12793_consen 20 VTLDELAELLFCS--RRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLEQGKYEQALQLLDF 95 (115)
T ss_pred eeHHHHHHHhCCC--HHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3445555555444 4567889999998772 22344455666777899999999999883
No 483
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=20.90 E-value=4.1e+02 Score=20.72 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=46.8
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCccHHHHH--HHHHhhcCCCchHHHHHHHHhccc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIAS---GVKHDGVTFV--AILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
..-..++...-+.++.++|++..+++.++ --.|+.+.|. .+.+.+-..||++++++++++.+.
T Consensus 76 slvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 76 SLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34455666666777999999999999763 3466777654 455666689999999999998854
No 484
>PHA01754 hypothetical protein
Probab=20.82 E-value=1.2e+02 Score=16.90 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHCCCCcc
Q 041561 71 EQAISLYKDIIASGVKHD 88 (156)
Q Consensus 71 ~~a~~~~~~m~~~g~~p~ 88 (156)
.+..++.++|++..++|-
T Consensus 47 ~EViKvvkemrr~~vkpv 64 (69)
T PHA01754 47 LEVVKVVKEMRRLQVKPV 64 (69)
T ss_pred HHHHHHHHHHHHcccCcc
Confidence 346678888988777763
No 485
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.82 E-value=5.1e+02 Score=21.71 Aligned_cols=69 Identities=6% Similarity=0.062 Sum_probs=37.0
Q ss_pred CCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc
Q 041561 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD 88 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 88 (156)
.|++..+..+++++...+- ....++..+........ .....++++. ..++...++++++++...|..|.
T Consensus 210 ~GdlR~aln~Ldql~~~~~-~~~It~~~v~~llg~~~~~~i~~lv~al-~~~d~~~al~~l~~l~~~g~d~~ 279 (584)
T PRK14952 210 GGSPRDTLSVLDQLLAGAA-DTHVTYQRALGLLGATDVALIDDAVDAL-AADDAAALFGAIESVIDAGHDPR 279 (584)
T ss_pred CCCHHHHHHHHHHHHhccC-CCCcCHHHHHHHHCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 4667777777777654321 22233333333332222 2222344433 34678888888888877776654
No 486
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=20.62 E-value=1.4e+02 Score=16.43 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHCCCCc
Q 041561 70 VEQAISLYKDIIASGVKH 87 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~p 87 (156)
.+...++|+.|.++|.-|
T Consensus 44 ~~~~~~l~~~m~~kGwY~ 61 (64)
T PF07875_consen 44 QQMQYELFNYMNQKGWYQ 61 (64)
T ss_pred HHHHHHHHHHHHHcCCcC
Confidence 566889999999998643
No 487
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=20.62 E-value=2.6e+02 Score=18.24 Aligned_cols=91 Identities=8% Similarity=0.024 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHhCCCCch-------HHHhHHHHHhhhcc-------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 21 LFLGRQILTRIVKDGYGNDI-------FVGSAPINIYCNCG-------VTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
...|.++++.+...|-.|+. ..|..+..+....- ..|+.++..+.+.|++.- .++|+.+.+..+.
T Consensus 49 ~~HA~~l~~~i~~~gg~~~~~~~~~~~~~~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~-~~~l~~~l~~q~e 127 (156)
T cd01055 49 REHAMKFFDYLNDRGGRVELPAIEAPPSEFESLLEVFEAALEHEQKVTESINNLVDLALEEKDYAT-FNFLQWFVKEQVE 127 (156)
T ss_pred HHHHHHHHHHHHHCCCCeeCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhH-HHHHHHHHHHHHH
Confidence 56789999999888743321 13333333322221 567777777777777543 3334444432111
Q ss_pred ccHHHHHHHHHhhcCCCchHHHHHHHH
Q 041561 87 HDGVTFVAILTPCSHSGLVYAEVEIFN 113 (156)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~ 113 (156)
....+..++.-.-+.|+-..+.-+|+
T Consensus 128 -~~~~~~~~l~~l~~~g~~~~~~~~~d 153 (156)
T cd01055 128 -EEALARDILDKLKLAGDDGGGLYMLD 153 (156)
T ss_pred -HHHHHHHHHHHHHHhCCCcchHHHhc
Confidence 12344444444444443334444443
No 488
>PF13934 ELYS: Nuclear pore complex assembly
Probab=20.52 E-value=3.3e+02 Score=19.45 Aligned_cols=71 Identities=10% Similarity=0.160 Sum_probs=46.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHH
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGD 138 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~ 138 (156)
-++.++.+.|+.+.|+.+++.+.-..-.+ ..-+.++.. ..++.+.+|..+-+....+ . -...+..
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R~~~~~----------~--~~~l~e~ 177 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQRSYPDE----------L--RRRLFEQ 177 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHHhCchh----------h--hHHHHHH
Confidence 58888888999999999998854322222 222333444 4558999999888777322 1 1456666
Q ss_pred HHHHHh
Q 041561 139 LVSSCQ 144 (156)
Q Consensus 139 li~~~~ 144 (156)
++..+.
T Consensus 178 l~~~~~ 183 (226)
T PF13934_consen 178 LLEHCL 183 (226)
T ss_pred HHHHHH
Confidence 666666
No 489
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=20.46 E-value=2.3e+02 Score=17.68 Aligned_cols=94 Identities=12% Similarity=0.012 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHHHhCCCCchHHHhHHHHHhhh-ccchHHHHHHHHHcCC--------------CHHHHHHHHHHHHHCC
Q 041561 20 SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCN-CGVTWNEMIHGYAENE--------------YVEQAISLYKDIIASG 84 (156)
Q Consensus 20 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~~~~~~~li~~~~~~g--------------~~~~a~~~~~~m~~~g 84 (156)
..+.+..+.+.+.+.|+.-|..-.-..+....+ .+..-..+..-+.+.| ..+.|.++...-....
T Consensus 7 ~~e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~~~G~~~I~~~L~~kGi~~~~i~~~l~~~~~~e~a~~~~~kk~~~~ 86 (121)
T PF02631_consen 7 SEEAIEEVIDRLKELGYIDDERYAESYVRSRLRRKGKGPRRIRQKLKQKGIDREIIEEALEEYDEEEEALELAEKKYRRY 86 (121)
T ss_dssp -HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHTT--HHHHHHHHTCS-HHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccccccHHHHHHHHHHHCCChHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 346688889999999988888777777777775 3311112222222222 2333444444433322
Q ss_pred -CCccHHHHHHHHHhhcCCC-chHHHHHHHH
Q 041561 85 -VKHDGVTFVAILTPCSHSG-LVYAEVEIFN 113 (156)
Q Consensus 85 -~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~ 113 (156)
-.++.....-++..+.+.| +.+.+..++.
T Consensus 87 ~~~~~~~~~~K~~~~L~rrGF~~~~i~~vi~ 117 (121)
T PF02631_consen 87 RKPSDRKRKQKLIRFLMRRGFSYDVIRRVIS 117 (121)
T ss_dssp TTS-CHHHHHHHHHHHHHTT--HHHHHHHCH
T ss_pred cCCCCHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 3455666666666666666 4444444433
No 490
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=20.44 E-value=3.5e+02 Score=19.77 Aligned_cols=61 Identities=20% Similarity=0.100 Sum_probs=28.3
Q ss_pred hHHHHHHHHHcCCCH---HHHHHHHHHHHHC-CCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 56 TWNEMIHGYAENEYV---EQAISLYKDIIAS-GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 56 ~~~~li~~~~~~g~~---~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
+...++.+|-..+.. ++|.++.+.+... |-+ ..+|-.-++.+.+.++.+.+.+++..|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344455555555543 3344444444332 212 222323344444456666666666666443
No 491
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=20.43 E-value=4.8e+02 Score=23.45 Aligned_cols=74 Identities=11% Similarity=0.075 Sum_probs=46.8
Q ss_pred HHHHHhcCCC-chHHHHHHHHHHHH---hCCCCc---hHHHhHHHHHhhhcc---chHHHHHHHHHcCCCHHHHHHHHHH
Q 041561 10 TVLSSCAKLS-SLFLGRQILTRIVK---DGYGND---IFVGSAPINIYCNCG---VTWNEMIHGYAENEYVEQAISLYKD 79 (156)
Q Consensus 10 ~ll~~~~~~~-~~~~a~~~~~~m~~---~g~~~~---~~~~~~li~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~ 79 (156)
.++.++.+.| +.+.|+++|+.+.+ .|+.-+ .+..-+.-.+|.|+. .-|.++++.- .+..++...+..+
T Consensus 644 ~Fi~ga~~~G~~~~~a~~if~~i~~Fa~YgFNKSHA~AYa~iaYqtAyLKahyP~eF~aalL~~~--~~~~~k~~~~i~E 721 (971)
T PRK05898 644 DFIEGALKNNYKQPLVNQIFEYIFSFADYGFNHSHSLAYSYISYWMAYLKHYYPLEFLSILLSHT--SASKDKLLSYLNE 721 (971)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhhhcHHHHHHHHHHcC--CCChHHHHHHHHH
Confidence 4566766666 45668888888865 345322 233334455666665 3445555542 3567788899999
Q ss_pred HHHCCC
Q 041561 80 IIASGV 85 (156)
Q Consensus 80 m~~~g~ 85 (156)
+++.|+
T Consensus 722 a~~~gI 727 (971)
T PRK05898 722 AKEFNI 727 (971)
T ss_pred HHHCCC
Confidence 999885
No 492
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=20.39 E-value=3.3e+02 Score=22.00 Aligned_cols=67 Identities=6% Similarity=0.054 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHhC-CCC--------chHH-HhHHHHHhhhcc--------ch-HHHHHHHHHcCCCHHHHHHHHHHHH
Q 041561 21 LFLGRQILTRIVKDG-YGN--------DIFV-GSAPINIYCNCG--------VT-WNEMIHGYAENEYVEQAISLYKDII 81 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g-~~~--------~~~~-~~~li~~~~~~~--------~~-~~~li~~~~~~g~~~~a~~~~~~m~ 81 (156)
.+.+.++.+.+.+.| +.. |... -.-++..+.++| ++ -..+++.+.+....++..+..+.++
T Consensus 254 ~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~ 333 (497)
T TIGR02026 254 RKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLR 333 (497)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345667777776665 221 1111 123567777766 22 2346666666666777777777777
Q ss_pred HCCCCc
Q 041561 82 ASGVKH 87 (156)
Q Consensus 82 ~~g~~p 87 (156)
+.|+.+
T Consensus 334 ~~Gi~~ 339 (497)
T TIGR02026 334 QHNILS 339 (497)
T ss_pred HCCCcE
Confidence 777653
No 493
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=20.28 E-value=3.6e+02 Score=19.81 Aligned_cols=78 Identities=10% Similarity=-0.037 Sum_probs=43.1
Q ss_pred HHHHHHHcCCC---HHHHHHHHHHHHHCCC----CccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC
Q 041561 59 EMIHGYAENEY---VEQAISLYKDIIASGV----KHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD 131 (156)
Q Consensus 59 ~li~~~~~~g~---~~~a~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p 131 (156)
.++...| |+ .+++.+.|++....+. ..+...-..++...++.|+.+.-..+++.... .+
T Consensus 134 ~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~------------~~ 199 (324)
T PF11838_consen 134 LLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN------------ST 199 (324)
T ss_dssp HHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT------------TS
T ss_pred HHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc------------cC
Confidence 3444445 54 5788888988877422 34555666677777788887766666666632 23
Q ss_pred ChhhHHHHHHHHhhcCCHh
Q 041561 132 DLVVWGDLVSSCQVHSNVR 150 (156)
Q Consensus 132 d~~~~~~li~~~~~~g~~~ 150 (156)
+..--..++.+.+...+.+
T Consensus 200 ~~~~k~~~l~aLa~~~d~~ 218 (324)
T PF11838_consen 200 SPEEKRRLLSALACSPDPE 218 (324)
T ss_dssp THHHHHHHHHHHTT-S-HH
T ss_pred CHHHHHHHHHhhhccCCHH
Confidence 4444555555555554444
No 494
>smart00031 DED Death effector domain.
Probab=20.27 E-value=1.4e+02 Score=17.39 Aligned_cols=40 Identities=8% Similarity=0.151 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHCC-CCccHHHHHHHHHhhcCCCchHHHHHH
Q 041561 70 VEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSGLVYAEVEI 111 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~ 111 (156)
...+.++|.+|.+.| +.|+... .+.+.+...++.|-...+
T Consensus 37 ~~~~ldlf~~Le~~~~l~~~nl~--~L~elL~~i~R~DLl~~i 77 (79)
T smart00031 37 IKTFLDLFSALEEQGLLSEDNLS--LLAELLYRLRRLDLLRRL 77 (79)
T ss_pred cCCHHHHHHHHHHcCCCCCccHH--HHHHHHHHcCHHHHHHHh
Confidence 567889999998875 4454433 344445555666655544
No 495
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.24 E-value=3e+02 Score=22.32 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 69 YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 69 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
.+++-.++++.+.+.| .+| ..+.-|++|-|.+++++|..-++.=
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s 112 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKES 112 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhh
Confidence 4677777887777765 233 2334478888888888888777654
No 496
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=20.23 E-value=1.6e+02 Score=15.75 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=23.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 041561 60 MIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95 (156)
Q Consensus 60 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 95 (156)
+--++.+.|++++|.+..+.+.+ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 34577899999999999998887 45665544333
No 497
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=20.15 E-value=4.2e+02 Score=20.51 Aligned_cols=46 Identities=7% Similarity=0.096 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCCch----HHHhHHHHHhhhcc-------------chHHHHHHHHHcCCCHHHH
Q 041561 27 ILTRIVKDGYGNDI----FVGSAPINIYCNCG-------------VTWNEMIHGYAENEYVEQA 73 (156)
Q Consensus 27 ~~~~m~~~g~~~~~----~~~~~li~~~~~~~-------------~~~~~li~~~~~~g~~~~a 73 (156)
+=++|++..+ |+. .+|+.+|++--..+ .+|.-|+.+++..|+.+-.
T Consensus 278 VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 278 VKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHH
Confidence 3344555554 333 56888887766555 7889999999999986643
No 498
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.10 E-value=3.5e+02 Score=20.77 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=37.4
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCccHHH-------HHHHHHhhcCCCchHHHHHHH
Q 041561 62 HGYAENEYVEQAISLYKDIIASGVKHDGVT-------FVAILTPCSHSGLVYAEVEIF 112 (156)
Q Consensus 62 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~ 112 (156)
+-..+.+++++|..++.+...+|+..|..+ ..-+.+-|.+.|+.....+..
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 344678889999999999998888777655 445777777777766555443
No 499
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=20.08 E-value=1.4e+02 Score=19.49 Aligned_cols=15 Identities=13% Similarity=0.115 Sum_probs=9.7
Q ss_pred HHHHHHHHHCCCCcc
Q 041561 74 ISLYKDIIASGVKHD 88 (156)
Q Consensus 74 ~~~~~~m~~~g~~p~ 88 (156)
.++.+-|+++++..|
T Consensus 88 ~EI~~IM~~~~v~FD 102 (128)
T PF09435_consen 88 REIRRIMKRRRVNFD 102 (128)
T ss_pred HHHHHHHHHcCCCHH
Confidence 456677777776644
Done!