Query 041561
Match_columns 156
No_of_seqs 129 out of 1276
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 14:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041561.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041561hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 4.2E-33 1.4E-37 217.1 15.1 141 6-155 27-197 (501)
2 4g26_A Pentatricopeptide repea 100.0 2.4E-31 8.2E-36 207.1 12.8 139 1-148 57-225 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 5.1E-26 1.8E-30 185.6 6.5 127 6-155 128-258 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 1E-19 3.4E-24 149.0 8.5 92 55-155 128-223 (1134)
5 2xpi_A Anaphase-promoting comp 99.5 1.7E-13 5.8E-18 107.2 14.0 139 5-154 407-571 (597)
6 2xpi_A Anaphase-promoting comp 99.5 1.9E-13 6.6E-18 106.8 13.2 142 3-155 303-497 (597)
7 1b89_A Protein (clathrin heavy 99.1 1.7E-10 5.9E-15 88.1 5.8 126 3-154 59-198 (449)
8 3mkr_A Coatomer subunit epsilo 99.0 8.6E-09 3E-13 74.7 14.0 141 3-155 63-222 (291)
9 1w3b_A UDP-N-acetylglucosamine 99.0 2.8E-08 9.7E-13 73.8 15.2 59 56-115 239-297 (388)
10 1w3b_A UDP-N-acetylglucosamine 98.9 5E-08 1.7E-12 72.4 14.9 130 13-155 211-361 (388)
11 2vq2_A PILW, putative fimbrial 98.9 6.6E-08 2.3E-12 65.8 14.3 140 5-155 8-169 (225)
12 2fo7_A Synthetic consensus TPR 98.9 4.7E-08 1.6E-12 61.0 12.3 123 7-155 3-125 (136)
13 2y4t_A DNAJ homolog subfamily 98.9 3E-08 1E-12 74.8 13.2 139 4-155 176-351 (450)
14 2y4t_A DNAJ homolog subfamily 98.9 2.6E-08 8.9E-13 75.1 12.7 138 4-154 25-198 (450)
15 2ho1_A Type 4 fimbrial biogene 98.9 7.8E-08 2.7E-12 67.0 13.5 136 7-153 39-195 (252)
16 2ho1_A Type 4 fimbrial biogene 98.8 3.5E-07 1.2E-11 63.7 15.1 140 4-155 70-231 (252)
17 4eqf_A PEX5-related protein; a 98.8 7.3E-08 2.5E-12 70.9 11.8 82 63-154 186-268 (365)
18 1b89_A Protein (clathrin heavy 98.8 1.5E-08 5.1E-13 77.5 8.0 125 3-154 92-228 (449)
19 2q7f_A YRRB protein; TPR, prot 98.8 3.2E-07 1.1E-11 63.2 13.7 140 4-155 56-215 (243)
20 2pl2_A Hypothetical conserved 98.7 3.6E-07 1.2E-11 63.1 12.2 136 6-154 40-206 (217)
21 3uq3_A Heat shock protein STI1 98.7 9.3E-07 3.2E-11 61.3 13.5 86 58-154 143-228 (258)
22 2vq2_A PILW, putative fimbrial 98.7 1.2E-06 4E-11 59.5 13.7 139 5-155 42-204 (225)
23 3as5_A MAMA; tetratricopeptide 98.7 8.3E-07 2.8E-11 58.3 12.4 136 8-155 11-166 (186)
24 1fch_A Peroxisomal targeting s 98.7 2.2E-06 7.4E-11 62.7 15.8 139 5-154 64-272 (368)
25 3uq3_A Heat shock protein STI1 98.7 1.1E-06 3.6E-11 61.0 13.4 136 7-154 7-194 (258)
26 2gw1_A Mitochondrial precursor 98.7 8.4E-07 2.9E-11 67.6 13.9 138 5-155 237-394 (514)
27 3mkr_A Coatomer subunit epsilo 98.7 5.3E-07 1.8E-11 65.3 12.1 123 13-152 109-253 (291)
28 4eqf_A PEX5-related protein; a 98.7 2.5E-07 8.4E-12 68.1 10.5 147 8-155 180-349 (365)
29 2q7f_A YRRB protein; TPR, prot 98.6 2.9E-07 9.8E-12 63.5 10.0 140 4-155 22-181 (243)
30 3vtx_A MAMA; tetratricopeptide 98.6 2.4E-06 8.2E-11 56.8 14.1 139 4-154 4-162 (184)
31 3hym_B Cell division cycle pro 98.6 9.3E-07 3.2E-11 63.5 12.7 138 6-154 126-291 (330)
32 3cv0_A Peroxisome targeting si 98.6 8.6E-07 2.9E-11 63.6 11.9 128 15-155 148-308 (327)
33 1fch_A Peroxisomal targeting s 98.6 1.3E-06 4.5E-11 63.9 12.9 116 39-155 216-352 (368)
34 3hym_B Cell division cycle pro 98.6 2.3E-06 7.8E-11 61.4 13.7 149 4-155 89-258 (330)
35 2pl2_A Hypothetical conserved 98.6 1.8E-06 6.1E-11 59.6 12.4 141 1-154 1-172 (217)
36 2gw1_A Mitochondrial precursor 98.5 3.2E-06 1.1E-10 64.4 12.7 141 4-155 303-471 (514)
37 2ond_A Cleavage stimulation fa 98.5 5.9E-06 2E-10 59.8 13.5 142 3-155 96-263 (308)
38 3cv0_A Peroxisome targeting si 98.5 3.8E-06 1.3E-10 60.2 12.3 138 4-154 20-193 (327)
39 3nf1_A KLC 1, kinesin light ch 98.4 2.8E-06 9.5E-11 60.5 10.8 148 5-155 27-217 (311)
40 1xnf_A Lipoprotein NLPI; TPR, 98.4 4.9E-06 1.7E-10 58.3 11.5 108 5-115 43-170 (275)
41 3ieg_A DNAJ homolog subfamily 98.4 8.5E-06 2.9E-10 58.9 12.9 139 5-154 3-175 (359)
42 3ieg_A DNAJ homolog subfamily 98.4 1.9E-05 6.3E-10 57.1 14.2 141 4-155 153-328 (359)
43 3fp2_A TPR repeat-containing p 98.4 1.3E-05 4.4E-10 61.5 13.7 136 7-155 245-400 (537)
44 3as5_A MAMA; tetratricopeptide 98.4 4E-06 1.4E-10 54.9 9.3 90 55-155 43-132 (186)
45 1xnf_A Lipoprotein NLPI; TPR, 98.3 8.5E-06 2.9E-10 57.0 11.1 128 15-154 15-165 (275)
46 3mv2_B Coatomer subunit epsilo 98.3 9E-06 3.1E-10 59.5 11.4 127 3-155 98-233 (310)
47 1na0_A Designed protein CTPR3; 98.3 2.3E-05 7.9E-10 47.8 11.9 97 5-117 9-105 (125)
48 3nf1_A KLC 1, kinesin light ch 98.3 8.7E-06 3E-10 57.9 10.6 150 6-155 70-300 (311)
49 3u4t_A TPR repeat-containing p 98.3 2.6E-05 9E-10 54.5 13.0 107 7-115 5-134 (272)
50 4i17_A Hypothetical protein; T 98.3 4.6E-05 1.6E-09 52.3 13.5 126 4-155 6-139 (228)
51 2ond_A Cleavage stimulation fa 98.3 2.9E-05 1E-09 56.1 13.0 128 17-155 69-225 (308)
52 4gyw_A UDP-N-acetylglucosamine 98.2 2.9E-05 9.8E-10 63.1 13.1 136 5-154 9-166 (723)
53 2fo7_A Synthetic consensus TPR 98.2 1.3E-05 4.4E-10 49.5 8.6 89 56-155 3-91 (136)
54 1na0_A Designed protein CTPR3; 98.2 2.4E-05 8.3E-10 47.7 9.6 90 55-155 10-99 (125)
55 3edt_B KLC 2, kinesin light ch 98.2 1.8E-05 6.3E-10 55.2 9.6 135 5-155 43-191 (283)
56 2vyi_A SGTA protein; chaperone 98.1 5.5E-05 1.9E-09 46.5 10.7 119 5-149 12-130 (131)
57 4abn_A Tetratricopeptide repea 98.1 1.4E-05 5E-10 61.5 9.5 136 6-153 138-312 (474)
58 2ooe_A Cleavage stimulation fa 98.1 0.0001 3.6E-09 57.1 14.1 140 5-155 321-485 (530)
59 3fp2_A TPR repeat-containing p 98.1 8.8E-05 3E-09 56.8 13.6 150 3-155 274-484 (537)
60 2lni_A Stress-induced-phosphop 98.1 7.4E-05 2.5E-09 46.2 10.2 118 4-147 15-132 (133)
61 3u4t_A TPR repeat-containing p 98.1 0.00024 8.1E-09 49.6 13.8 139 5-154 37-200 (272)
62 1hh8_A P67PHOX, NCF-2, neutrop 98.1 0.0001 3.4E-09 49.8 11.5 128 9-155 10-143 (213)
63 3edt_B KLC 2, kinesin light ch 98.0 7.9E-05 2.7E-09 51.9 11.0 137 6-155 86-274 (283)
64 2ooe_A Cleavage stimulation fa 98.0 6.5E-05 2.2E-09 58.2 11.4 127 18-155 292-447 (530)
65 1a17_A Serine/threonine protei 98.0 0.00013 4.4E-09 47.0 11.2 123 7-155 15-139 (166)
66 4abn_A Tetratricopeptide repea 98.0 9E-05 3.1E-09 57.0 11.0 125 4-155 101-243 (474)
67 2kck_A TPR repeat; tetratricop 97.9 0.00063 2.2E-08 40.4 12.2 100 4-118 5-106 (112)
68 1ouv_A Conserved hypothetical 97.9 0.0011 3.7E-08 46.5 14.6 56 57-115 113-176 (273)
69 1qqe_A Vesicular transport pro 97.9 0.00039 1.3E-08 49.8 12.1 140 7-154 39-220 (292)
70 2lni_A Stress-induced-phosphop 97.8 0.0003 1E-08 43.3 10.2 90 55-155 17-106 (133)
71 1ouv_A Conserved hypothetical 97.8 0.0014 4.8E-08 46.0 14.7 132 5-154 6-171 (273)
72 2vsy_A XCC0866; transferase, g 97.8 0.00029 1E-08 55.1 11.9 124 5-154 23-149 (568)
73 1elr_A TPR2A-domain of HOP; HO 97.8 9.8E-05 3.4E-09 45.4 7.5 114 6-145 5-124 (131)
74 3gyz_A Chaperone protein IPGC; 97.8 0.00044 1.5E-08 45.1 10.9 89 55-154 37-125 (151)
75 2kck_A TPR repeat; tetratricop 97.8 0.00021 7.3E-09 42.6 8.6 90 55-155 7-99 (112)
76 3vtx_A MAMA; tetratricopeptide 97.8 0.00069 2.4E-08 44.6 11.7 111 4-116 38-168 (184)
77 1p5q_A FKBP52, FK506-binding p 97.8 0.00027 9.4E-09 51.9 10.4 132 6-154 148-285 (336)
78 3q49_B STIP1 homology and U bo 97.7 0.00057 2E-08 42.6 10.2 98 4-117 8-105 (137)
79 1elw_A TPR1-domain of HOP; HOP 97.7 0.00041 1.4E-08 41.6 9.2 88 56-154 6-93 (118)
80 1elw_A TPR1-domain of HOP; HOP 97.7 0.00095 3.3E-08 39.9 10.8 97 4-116 3-99 (118)
81 2vyi_A SGTA protein; chaperone 97.7 0.00064 2.2E-08 41.5 9.6 90 55-155 13-102 (131)
82 2e2e_A Formate-dependent nitri 97.7 0.00031 1.1E-08 46.1 8.5 114 15-154 20-136 (177)
83 3qou_A Protein YBBN; thioredox 97.7 0.00081 2.8E-08 48.1 11.2 137 8-154 120-276 (287)
84 2dba_A Smooth muscle cell asso 97.7 0.00067 2.3E-08 42.6 9.7 89 55-155 29-121 (148)
85 2vgx_A Chaperone SYCD; alterna 97.6 0.00068 2.3E-08 43.7 9.5 89 55-154 22-110 (148)
86 1qqe_A Vesicular transport pro 97.6 0.0025 8.6E-08 45.5 13.4 138 6-154 78-261 (292)
87 2dba_A Smooth muscle cell asso 97.6 0.002 6.8E-08 40.4 11.6 101 4-117 27-127 (148)
88 1xi4_A Clathrin heavy chain; a 97.6 0.0012 4.2E-08 57.1 12.9 140 4-155 1133-1302(1630)
89 3q49_B STIP1 homology and U bo 97.6 0.001 3.5E-08 41.4 9.7 90 55-155 10-99 (137)
90 2xcb_A PCRH, regulatory protei 97.6 0.00092 3.1E-08 42.5 9.5 87 57-154 21-107 (142)
91 2h6f_A Protein farnesyltransfe 97.6 0.00064 2.2E-08 51.1 9.8 135 6-152 98-254 (382)
92 3sz7_A HSC70 cochaperone (SGT) 97.6 0.00098 3.4E-08 43.3 9.6 88 56-154 13-100 (164)
93 3upv_A Heat shock protein STI1 97.6 0.0012 4.1E-08 40.7 9.6 88 56-154 6-93 (126)
94 3gyz_A Chaperone protein IPGC; 97.6 0.00055 1.9E-08 44.6 8.3 96 6-117 37-132 (151)
95 1elr_A TPR2A-domain of HOP; HO 97.6 0.00046 1.6E-08 42.2 7.6 92 56-155 6-101 (131)
96 4gco_A Protein STI-1; structur 97.5 0.0013 4.5E-08 41.2 9.6 88 56-154 15-102 (126)
97 3sz7_A HSC70 cochaperone (SGT) 97.5 0.0013 4.3E-08 42.7 9.7 97 5-118 11-108 (164)
98 3gw4_A Uncharacterized protein 97.5 0.0016 5.4E-08 43.2 10.3 132 6-155 27-169 (203)
99 3qky_A Outer membrane assembly 97.5 0.0025 8.5E-08 44.5 11.7 127 6-155 16-170 (261)
100 1wao_1 Serine/threonine protei 97.5 0.00059 2E-08 52.6 9.1 115 14-155 15-132 (477)
101 3k9i_A BH0479 protein; putativ 97.5 0.00019 6.6E-09 44.1 5.2 107 17-145 2-109 (117)
102 4ga2_A E3 SUMO-protein ligase 97.5 0.00054 1.9E-08 44.2 7.5 109 17-152 9-118 (150)
103 4ga2_A E3 SUMO-protein ligase 97.5 0.0016 5.5E-08 41.9 9.5 115 6-148 32-149 (150)
104 1a17_A Serine/threonine protei 97.5 0.0016 5.6E-08 41.6 9.6 90 55-155 14-103 (166)
105 4gco_A Protein STI-1; structur 97.4 0.0024 8.1E-08 40.0 9.8 93 9-117 17-109 (126)
106 2yhc_A BAMD, UPF0169 lipoprote 97.4 0.0047 1.6E-07 42.2 12.1 76 67-155 109-206 (225)
107 2ifu_A Gamma-SNAP; membrane fu 97.4 0.00098 3.4E-08 48.1 8.9 142 7-154 38-216 (307)
108 4i17_A Hypothetical protein; T 97.4 0.0016 5.3E-08 44.4 9.4 89 56-155 9-98 (228)
109 3u3w_A Transcriptional activat 97.4 0.0031 1E-07 45.0 11.3 131 11-155 81-218 (293)
110 2xev_A YBGF; tetratricopeptide 97.4 0.0024 8.2E-08 39.2 9.4 84 60-154 8-97 (129)
111 1hh8_A P67PHOX, NCF-2, neutrop 97.4 0.0036 1.2E-07 42.0 10.9 100 2-116 34-148 (213)
112 4a1s_A PINS, partner of inscut 97.4 0.0004 1.4E-08 51.5 6.5 141 7-155 88-285 (411)
113 2xev_A YBGF; tetratricopeptide 97.4 0.0081 2.8E-07 36.7 12.2 98 9-118 6-105 (129)
114 3ro2_A PINS homolog, G-protein 97.4 0.0006 2.1E-08 48.4 7.2 96 55-155 224-325 (338)
115 3sf4_A G-protein-signaling mod 97.4 0.00096 3.3E-08 48.9 8.4 96 55-155 228-329 (406)
116 2r5s_A Uncharacterized protein 97.3 0.00089 3.1E-08 44.1 7.3 109 5-115 40-170 (176)
117 2fbn_A 70 kDa peptidylprolyl i 97.3 0.0033 1.1E-07 42.0 10.3 133 8-153 41-176 (198)
118 2vsy_A XCC0866; transferase, g 97.3 0.0012 4E-08 51.6 9.1 112 18-155 2-113 (568)
119 2vgx_A Chaperone SYCD; alterna 97.3 0.0022 7.6E-08 41.2 9.0 96 6-117 22-117 (148)
120 4a1s_A PINS, partner of inscut 97.3 0.00084 2.9E-08 49.7 7.8 95 56-155 265-365 (411)
121 2qfc_A PLCR protein; TPR, HTH, 97.3 0.0071 2.4E-07 43.0 12.4 139 9-152 79-255 (293)
122 2xcb_A PCRH, regulatory protei 97.3 0.0028 9.4E-08 40.2 9.1 95 7-117 20-114 (142)
123 3urz_A Uncharacterized protein 97.3 0.0031 1.1E-07 42.7 9.8 100 13-117 12-116 (208)
124 1kt0_A FKBP51, 51 kDa FK506-bi 97.3 0.0031 1E-07 48.3 10.7 128 7-154 270-406 (457)
125 3upv_A Heat shock protein STI1 97.3 0.0052 1.8E-07 37.7 10.0 96 6-117 5-100 (126)
126 2h6f_A Protein farnesyltransfe 97.3 0.0032 1.1E-07 47.3 10.4 137 5-154 131-297 (382)
127 3k9i_A BH0479 protein; putativ 97.3 0.00025 8.5E-09 43.6 3.7 80 66-155 2-83 (117)
128 1hxi_A PEX5, peroxisome target 97.3 0.0022 7.4E-08 39.8 8.0 87 57-155 20-107 (121)
129 3ro2_A PINS homolog, G-protein 97.2 0.004 1.4E-07 44.0 10.4 141 10-155 10-205 (338)
130 3u3w_A Transcriptional activat 97.2 0.0053 1.8E-07 43.7 11.0 130 10-154 120-258 (293)
131 2pzi_A Probable serine/threoni 97.2 0.004 1.4E-07 50.1 11.1 127 16-154 402-555 (681)
132 2e2e_A Formate-dependent nitri 97.2 0.0053 1.8E-07 40.1 10.1 98 4-117 43-143 (177)
133 3ulq_A Response regulator aspa 97.2 0.0051 1.7E-07 45.3 10.8 137 14-155 112-286 (383)
134 3ro3_A PINS homolog, G-protein 97.2 0.0023 7.7E-08 40.3 7.7 134 7-155 11-151 (164)
135 1ihg_A Cyclophilin 40; ppiase 97.2 0.0052 1.8E-07 45.8 10.7 134 8-155 226-363 (370)
136 3sf4_A G-protein-signaling mod 97.1 0.0052 1.8E-07 44.9 10.4 144 7-155 11-209 (406)
137 3mv2_B Coatomer subunit epsilo 97.1 0.0023 8E-08 46.8 8.2 99 5-117 136-239 (310)
138 4gyw_A UDP-N-acetylglucosamine 97.1 0.0059 2E-07 49.6 11.3 87 55-154 44-132 (723)
139 2ifu_A Gamma-SNAP; membrane fu 97.1 0.01 3.5E-07 42.6 11.6 138 7-154 78-253 (307)
140 2l6j_A TPR repeat-containing p 97.1 0.0024 8E-08 38.1 7.1 87 55-153 5-98 (111)
141 1hz4_A MALT regulatory protein 97.1 0.014 4.9E-07 42.6 12.3 137 14-155 23-196 (373)
142 3qky_A Outer membrane assembly 97.1 0.0076 2.6E-07 41.9 10.3 138 6-154 53-253 (261)
143 3q15_A PSP28, response regulat 97.1 0.0052 1.8E-07 45.3 9.8 96 55-155 183-283 (378)
144 3ulq_A Response regulator aspa 97.1 0.0082 2.8E-07 44.2 10.9 124 7-154 226-360 (383)
145 4gcn_A Protein STI-1; structur 97.1 0.0033 1.1E-07 39.3 7.5 93 10-117 13-111 (127)
146 2c2l_A CHIP, carboxy terminus 97.0 0.0077 2.6E-07 42.9 10.1 88 56-154 6-93 (281)
147 4g1t_A Interferon-induced prot 97.0 0.015 5.2E-07 43.7 11.9 146 5-154 247-451 (472)
148 1hz4_A MALT regulatory protein 97.0 0.021 7.2E-07 41.7 12.4 141 9-155 97-275 (373)
149 1hxi_A PEX5, peroxisome target 97.0 0.011 3.7E-07 36.5 9.2 94 7-116 19-112 (121)
150 2fbn_A 70 kDa peptidylprolyl i 97.0 0.012 4E-07 39.2 10.0 91 55-155 39-144 (198)
151 3q15_A PSP28, response regulat 97.0 0.026 8.8E-07 41.5 12.7 137 7-154 184-357 (378)
152 2r5s_A Uncharacterized protein 97.0 0.0077 2.6E-07 39.5 8.9 134 7-154 8-165 (176)
153 2pzi_A Probable serine/threoni 96.9 0.0068 2.3E-07 48.7 9.9 130 5-148 433-583 (681)
154 3n71_A Histone lysine methyltr 96.9 0.0093 3.2E-07 46.3 10.2 123 15-154 319-456 (490)
155 1p5q_A FKBP52, FK506-binding p 96.9 0.0074 2.5E-07 44.2 9.1 90 55-154 148-251 (336)
156 3qou_A Protein YBBN; thioredox 96.8 0.0043 1.5E-07 44.3 7.3 109 5-115 151-281 (287)
157 4e6h_A MRNA 3'-END-processing 96.8 0.012 4.2E-07 47.5 10.6 137 8-155 381-563 (679)
158 2l6j_A TPR repeat-containing p 96.8 0.0017 5.6E-08 38.8 4.3 96 3-115 2-104 (111)
159 1xi4_A Clathrin heavy chain; a 96.8 0.024 8.2E-07 49.4 12.4 137 7-154 1223-1376(1630)
160 2c2l_A CHIP, carboxy terminus 96.8 0.02 6.7E-07 40.7 10.3 96 4-116 3-99 (281)
161 1na3_A Designed protein CTPR2; 96.7 0.019 6.6E-07 32.6 8.5 80 55-145 10-89 (91)
162 4gcn_A Protein STI-1; structur 96.7 0.0094 3.2E-07 37.1 7.3 91 56-154 10-104 (127)
163 3urz_A Uncharacterized protein 96.7 0.0077 2.6E-07 40.7 7.4 82 62-155 12-110 (208)
164 4e6h_A MRNA 3'-END-processing 96.6 0.017 6E-07 46.6 9.7 126 7-143 436-584 (679)
165 2if4_A ATFKBP42; FKBP-like, al 96.5 0.04 1.4E-06 40.3 10.6 104 8-116 182-291 (338)
166 3qww_A SET and MYND domain-con 96.5 0.02 6.8E-07 43.7 9.1 89 17-115 310-408 (433)
167 3rjv_A Putative SEL1 repeat pr 96.4 0.11 3.7E-06 35.1 12.7 90 5-115 18-115 (212)
168 3rkv_A Putative peptidylprolyl 96.4 0.018 6.1E-07 37.0 7.6 59 56-115 65-123 (162)
169 3rkv_A Putative peptidylprolyl 96.4 0.022 7.7E-07 36.5 7.9 81 8-90 14-131 (162)
170 2uy1_A Cleavage stimulation fa 96.4 0.07 2.4E-06 41.3 11.8 135 7-154 215-375 (493)
171 3gw4_A Uncharacterized protein 96.2 0.038 1.3E-06 36.3 8.6 101 6-116 67-174 (203)
172 3qwp_A SET and MYND domain-con 96.2 0.027 9.1E-07 42.9 8.6 94 12-115 294-397 (429)
173 3ro3_A PINS homolog, G-protein 96.2 0.0077 2.6E-07 37.8 4.7 96 55-155 10-111 (164)
174 2if4_A ATFKBP42; FKBP-like, al 96.2 0.023 8E-07 41.5 7.9 88 55-154 180-285 (338)
175 4f3v_A ESX-1 secretion system 96.2 0.036 1.2E-06 39.9 8.6 105 12-118 109-237 (282)
176 1kt0_A FKBP51, 51 kDa FK506-bi 96.1 0.036 1.2E-06 42.3 9.0 90 55-154 269-372 (457)
177 3ma5_A Tetratricopeptide repea 96.1 0.019 6.4E-07 34.0 6.0 86 55-149 8-93 (100)
178 1ihg_A Cyclophilin 40; ppiase 96.0 0.033 1.1E-06 41.4 8.1 90 55-154 224-328 (370)
179 1v54_E Cytochrome C oxidase po 96.0 0.039 1.3E-06 33.5 6.6 64 69-142 25-88 (109)
180 4b4t_Q 26S proteasome regulato 95.9 0.068 2.3E-06 39.6 9.6 142 8-154 58-237 (434)
181 2xm6_A Protein corresponding t 95.9 0.38 1.3E-05 36.6 14.6 16 67-82 164-179 (490)
182 2kat_A Uncharacterized protein 95.9 0.028 9.7E-07 33.8 6.1 85 55-148 20-104 (115)
183 1wao_1 Serine/threonine protei 95.8 0.035 1.2E-06 42.7 7.7 82 63-155 15-96 (477)
184 2qfc_A PLCR protein; TPR, HTH, 95.7 0.21 7E-06 35.3 10.8 105 11-115 121-263 (293)
185 4b4t_Q 26S proteasome regulato 95.6 0.23 8E-06 36.7 11.3 138 13-155 12-197 (434)
186 4g1t_A Interferon-induced prot 95.4 0.13 4.3E-06 38.6 9.4 99 5-116 51-165 (472)
187 2kat_A Uncharacterized protein 95.4 0.043 1.5E-06 32.9 5.6 28 55-82 54-81 (115)
188 3n71_A Histone lysine methyltr 95.4 0.072 2.5E-06 41.3 8.0 100 6-118 352-464 (490)
189 2xm6_A Protein corresponding t 95.2 0.72 2.5E-05 35.0 14.9 119 18-154 56-208 (490)
190 1na3_A Designed protein CTPR2; 95.2 0.16 5.4E-06 28.5 7.5 64 5-83 9-72 (91)
191 2uy1_A Cleavage stimulation fa 95.2 0.21 7.3E-06 38.6 10.1 119 7-155 288-406 (493)
192 2y69_E Cytochrome C oxidase su 95.2 0.098 3.3E-06 33.5 6.6 87 46-142 39-131 (152)
193 3qwp_A SET and MYND domain-con 95.1 0.08 2.7E-06 40.3 7.5 88 61-155 294-393 (429)
194 3ma5_A Tetratricopeptide repea 94.9 0.073 2.5E-06 31.3 5.5 58 88-155 6-63 (100)
195 2hr2_A Hypothetical protein; a 94.8 0.23 8E-06 32.5 8.0 94 57-154 14-123 (159)
196 2yhc_A BAMD, UPF0169 lipoprote 94.7 0.15 5.3E-06 34.5 7.4 60 59-118 9-70 (225)
197 2hr2_A Hypothetical protein; a 94.5 0.32 1.1E-05 31.9 8.2 99 13-115 19-128 (159)
198 3ly7_A Transcriptional activat 94.4 0.69 2.4E-05 34.6 10.6 121 3-138 192-348 (372)
199 2kc7_A BFR218_protein; tetratr 93.9 0.39 1.3E-05 27.5 7.1 79 13-115 8-87 (99)
200 3rjv_A Putative SEL1 repeat pr 93.8 0.95 3.3E-05 30.3 12.3 118 8-154 53-189 (212)
201 1klx_A Cysteine rich protein B 93.6 0.63 2.2E-05 29.1 8.2 76 18-115 8-87 (138)
202 2kc7_A BFR218_protein; tetratr 93.5 0.52 1.8E-05 26.9 7.2 57 61-118 7-64 (99)
203 3qww_A SET and MYND domain-con 93.3 0.29 9.8E-06 37.3 7.1 63 6-81 341-409 (433)
204 4f3v_A ESX-1 secretion system 93.1 0.24 8.2E-06 35.6 6.0 81 60-154 108-192 (282)
205 1wy6_A Hypothetical protein ST 92.4 1.4 4.9E-05 28.4 8.8 102 17-120 19-155 (172)
206 3mkq_A Coatomer beta'-subunit; 92.3 0.22 7.6E-06 40.0 5.5 26 55-80 682-707 (814)
207 1pc2_A Mitochondria fission pr 91.7 1.8 6.1E-05 28.1 8.6 81 19-116 12-98 (152)
208 3mkq_A Coatomer beta'-subunit; 90.4 5.9 0.0002 31.7 12.1 88 15-115 662-762 (814)
209 3e4b_A ALGK; tetratricopeptide 90.1 4.8 0.00016 30.3 11.4 17 20-36 89-105 (452)
210 4h7y_A Dual specificity protei 90.0 2.3 7.9E-05 27.7 7.5 101 6-116 14-121 (161)
211 1pc2_A Mitochondria fission pr 89.1 2.6 8.9E-05 27.3 7.4 75 69-155 13-93 (152)
212 2ff4_A Probable regulatory pro 88.7 1.7 5.9E-05 32.4 7.2 105 18-123 128-243 (388)
213 3e4b_A ALGK; tetratricopeptide 88.7 6.3 0.00022 29.7 12.3 28 57-84 179-209 (452)
214 3ly7_A Transcriptional activat 88.7 2.3 7.8E-05 31.8 7.7 73 4-94 276-348 (372)
215 2ff4_A Probable regulatory pro 88.4 2.7 9.2E-05 31.4 8.1 68 12-94 178-250 (388)
216 3bee_A Putative YFRE protein; 87.9 2.6 9.1E-05 24.5 7.0 67 3-84 4-73 (93)
217 1v54_E Cytochrome C oxidase po 87.7 3.2 0.00011 25.1 7.9 71 13-98 17-88 (109)
218 4gns_B Protein CSD3, chitin bi 87.5 8.9 0.0003 31.5 11.0 106 9-116 252-398 (754)
219 3lvg_A Clathrin heavy chain 1; 87.3 0.086 2.9E-06 41.2 -0.6 127 4-154 82-220 (624)
220 2v5f_A Prolyl 4-hydroxylase su 85.6 3.8 0.00013 24.0 6.7 58 59-116 10-73 (104)
221 3dra_A Protein farnesyltransfe 85.5 8.3 0.00029 27.8 11.7 93 55-155 181-280 (306)
222 2y69_E Cytochrome C oxidase su 85.2 5.5 0.00019 25.5 7.9 64 20-98 68-131 (152)
223 1zu2_A Mitochondrial import re 85.0 1.3 4.6E-05 28.9 4.3 100 17-144 14-135 (158)
224 1nzn_A CGI-135 protein, fissio 83.6 6.1 0.00021 24.7 7.0 13 142-154 83-95 (126)
225 3u64_A Protein TP_0956; tetrat 81.4 9 0.00031 27.7 7.7 78 55-141 200-285 (301)
226 3mkq_B Coatomer subunit alpha; 80.5 10 0.00034 25.2 7.2 45 65-115 16-60 (177)
227 1wy6_A Hypothetical protein ST 79.5 10 0.00035 24.5 7.8 74 67-155 74-147 (172)
228 1zu2_A Mitochondrial import re 76.2 2.7 9.2E-05 27.4 3.4 63 21-100 62-135 (158)
229 3k1s_A PTS system, cellobiose- 74.0 6.3 0.00022 24.0 4.4 68 16-84 33-109 (109)
230 2nsz_A Programmed cell death p 72.7 6.8 0.00023 24.4 4.5 59 57-116 10-70 (129)
231 3u64_A Protein TP_0956; tetrat 72.3 23 0.00078 25.6 7.7 77 6-96 200-284 (301)
232 2v5f_A Prolyl 4-hydroxylase su 69.8 14 0.00047 21.4 8.3 70 4-89 4-79 (104)
233 1klx_A Cysteine rich protein B 69.2 17 0.00058 22.2 10.9 83 13-115 33-123 (138)
234 2ion_A PDCD4, programmed cell 69.1 8.7 0.0003 24.7 4.5 58 57-115 12-71 (152)
235 3bee_A Putative YFRE protein; 69.1 14 0.00048 21.2 6.7 47 70-118 25-72 (93)
236 1nzn_A CGI-135 protein, fissio 68.9 18 0.00062 22.5 6.6 56 61-117 42-102 (126)
237 2p58_C Putative type III secre 68.2 17 0.00059 21.9 6.2 56 70-140 23-78 (116)
238 2uwj_G Type III export protein 66.9 17 0.00056 22.0 5.0 55 70-139 22-76 (115)
239 4h7y_A Dual specificity protei 66.5 12 0.00042 24.3 4.7 87 55-155 14-116 (161)
240 3mkq_B Coatomer subunit alpha; 65.3 27 0.00092 23.1 9.2 34 15-54 15-48 (177)
241 1dce_A Protein (RAB geranylger 61.3 57 0.0019 25.5 10.4 99 21-145 89-190 (567)
242 3f3f_C Nucleoporin NUP85; stru 60.3 26 0.00087 27.8 6.4 88 55-153 480-569 (570)
243 2xig_A Ferric uptake regulatio 59.2 31 0.0011 21.8 6.0 65 27-106 14-78 (150)
244 4b4t_P 26S proteasome regulato 58.3 58 0.002 24.6 9.0 143 7-154 58-239 (445)
245 2o03_A Probable zinc uptake re 58.2 16 0.00054 22.6 4.2 48 59-106 15-62 (131)
246 2rg8_A Programmed cell death p 56.7 35 0.0012 22.2 5.7 58 57-115 13-71 (165)
247 2fe3_A Peroxide operon regulat 55.8 35 0.0012 21.4 6.4 64 28-106 10-73 (145)
248 3mwm_A ZUR, putative metal upt 53.9 24 0.00084 22.0 4.6 45 10-54 18-62 (139)
249 3mwm_A ZUR, putative metal upt 53.8 14 0.00049 23.1 3.4 48 59-106 18-65 (139)
250 2b7e_A PRE-mRNA processing pro 53.5 7.6 0.00026 20.8 1.7 46 70-115 2-55 (59)
251 2yru_A Steroid receptor RNA ac 52.7 38 0.0013 20.8 6.1 64 55-118 20-90 (118)
252 3esl_A Checkpoint serine/threo 51.8 53 0.0018 22.2 7.2 59 19-90 93-151 (202)
253 4a1g_A Mitotic checkpoint seri 51.2 46 0.0016 21.4 5.7 53 24-89 84-136 (152)
254 4ets_A Ferric uptake regulatio 51.1 46 0.0016 21.4 5.9 70 22-106 14-86 (162)
255 2p1h_A APAF-1, apoptotic prote 50.2 34 0.0012 19.6 7.3 42 66-111 48-89 (94)
256 3eiq_C Programmed cell death p 49.3 28 0.00096 25.8 4.8 61 55-116 218-280 (358)
257 1y8m_A FIS1; mitochondria, unk 48.9 41 0.0014 21.5 4.9 53 63-116 48-104 (144)
258 3ygs_P Procaspase 9; apoptosis 48.7 38 0.0013 19.7 6.5 38 103-153 51-88 (97)
259 3bu8_A Telomeric repeat-bindin 48.5 12 0.00041 25.8 2.5 92 55-155 18-136 (235)
260 2e2a_A Protein (enzyme IIA); h 48.2 29 0.00098 20.9 3.9 65 15-80 30-103 (105)
261 2wvi_A Mitotic checkpoint seri 48.0 55 0.0019 21.3 6.0 55 24-91 79-133 (164)
262 1mzb_A Ferric uptake regulatio 47.7 20 0.00069 22.2 3.4 62 30-106 8-70 (136)
263 2o03_A Probable zinc uptake re 47.3 26 0.00089 21.5 3.9 45 10-54 15-59 (131)
264 1ug3_A EIF4GI, eukaryotic prot 46.8 11 0.00039 27.5 2.4 59 57-116 14-73 (339)
265 4gns_B Protein CSD3, chitin bi 46.6 31 0.0011 28.3 5.0 52 14-80 346-397 (754)
266 3rjo_A Endoplasmic reticulum a 46.4 89 0.003 23.3 12.9 76 10-85 202-298 (419)
267 2zu6_B Programmed cell death p 45.6 31 0.0011 24.9 4.5 61 55-116 167-229 (307)
268 1oai_A Nuclear RNA export fact 45.3 24 0.00083 18.7 3.0 23 67-89 33-56 (59)
269 1mzb_A Ferric uptake regulatio 45.2 33 0.0011 21.2 4.2 45 10-54 22-67 (136)
270 1k1a_A B-cell lymphoma 3-encod 43.5 34 0.0012 22.5 4.3 29 11-39 12-40 (241)
271 1dce_A Protein (RAB geranylger 43.3 1.2E+02 0.004 23.7 12.2 74 70-154 89-165 (567)
272 3dra_A Protein farnesyltransfe 43.0 89 0.003 22.3 12.1 112 16-153 44-166 (306)
273 3bge_A Predicted ATPase; struc 42.3 71 0.0024 21.6 5.5 63 10-72 9-81 (201)
274 2w57_A Ferric uptake regulatio 42.1 41 0.0014 21.2 4.3 45 10-54 21-66 (150)
275 2xig_A Ferric uptake regulatio 42.1 36 0.0012 21.5 4.0 45 10-54 31-75 (150)
276 1wcr_A PTS system, N, N'-diace 41.9 37 0.0013 20.3 3.7 65 15-80 28-101 (103)
277 3o48_A Mitochondria fission 1 41.8 32 0.0011 21.7 3.6 48 69-116 58-105 (134)
278 2d2s_A Exocyst complex compone 41.0 86 0.0029 21.6 7.1 92 11-115 24-117 (235)
279 2d2s_A Exocyst complex compone 40.9 86 0.0029 21.6 6.6 84 60-155 24-113 (235)
280 2f40_A Hypothetical protein PF 40.0 2.2 7.4E-05 24.8 -1.9 23 32-54 26-48 (96)
281 2qq8_A TBC1 domain family memb 39.8 41 0.0014 24.3 4.5 43 75-117 214-256 (334)
282 1zbp_A Hypothetical protein VP 39.8 60 0.002 23.1 5.1 48 97-154 5-52 (273)
283 1zl8_A LIN-7; heterodimer, alp 39.7 20 0.00067 18.5 1.9 45 68-114 7-51 (53)
284 2fu4_A Ferric uptake regulatio 39.6 47 0.0016 18.2 4.1 16 70-85 52-67 (83)
285 2r9g_A AAA ATPase, central reg 39.3 61 0.0021 22.0 4.8 62 9-71 15-86 (204)
286 2w57_A Ferric uptake regulatio 39.2 26 0.00089 22.2 3.0 63 29-106 6-69 (150)
287 4aez_C MAD3, mitotic spindle c 38.9 83 0.0028 21.6 5.6 53 23-88 132-184 (223)
288 4fhn_B Nucleoporin NUP120; pro 38.8 1.8E+02 0.0062 24.9 8.7 127 13-151 850-989 (1139)
289 2fe3_A Peroxide operon regulat 38.6 35 0.0012 21.4 3.5 30 11-40 27-56 (145)
290 4b4t_R RPN7, 26S proteasome re 38.6 41 0.0014 25.3 4.4 62 55-116 132-195 (429)
291 4ets_A Ferric uptake regulatio 38.3 49 0.0017 21.2 4.2 31 10-40 37-69 (162)
292 2f6m_A Suppressor protein STP2 37.1 46 0.0016 18.1 3.2 46 56-102 4-49 (65)
293 2i7a_A Calpain 13; calcium-dep 36.0 85 0.0029 20.0 7.6 44 35-78 40-86 (174)
294 3q7a_A Farnesyltransferase alp 36.0 1.3E+02 0.0044 22.1 10.0 96 55-155 202-324 (349)
295 3eyy_A Putative iron uptake re 35.4 26 0.0009 22.0 2.5 61 29-105 8-68 (145)
296 3qye_A TBC1 domain family memb 34.8 43 0.0015 24.1 3.9 44 75-118 209-252 (331)
297 3ctd_A Putative ATPase, AAA fa 34.7 84 0.0029 21.4 5.0 64 9-72 36-109 (213)
298 2dce_A KIAA1915 protein; swirm 34.6 15 0.00052 22.3 1.2 29 15-43 78-109 (111)
299 2hpi_A DNA polymerase III alph 33.4 97 0.0033 27.1 6.2 74 11-86 784-867 (1220)
300 2qfz_A TBC1 domain family memb 33.0 56 0.0019 23.6 4.3 44 75-118 230-273 (345)
301 3esl_A Checkpoint serine/threo 32.9 82 0.0028 21.3 4.7 60 55-115 81-141 (202)
302 3hzj_A Rabgap1L, RAB GTPase-ac 32.7 47 0.0016 23.6 3.8 44 75-118 175-218 (310)
303 1eum_A Ferritin 1; ECFTNA, met 32.6 96 0.0033 19.7 5.8 93 21-115 51-157 (165)
304 1zbp_A Hypothetical protein VP 32.0 1.2E+02 0.004 21.6 5.6 52 63-115 6-57 (273)
305 3bu8_A Telomeric repeat-bindin 31.7 96 0.0033 21.4 4.8 49 70-118 88-143 (235)
306 2qq8_A TBC1 domain family memb 31.0 1.1E+02 0.0037 22.1 5.5 30 55-84 229-258 (334)
307 2jnf_A Troponin C; stretch act 30.8 90 0.0031 18.8 8.7 91 25-115 34-136 (158)
308 1fkm_A Protein (GYP1P), ORF YO 30.3 70 0.0024 23.8 4.5 44 75-118 217-260 (396)
309 3q7a_A Farnesyltransferase alp 30.3 1.6E+02 0.0055 21.5 11.3 110 13-148 62-174 (349)
310 3qil_A Clathrin heavy chain 1; 30.2 62 0.0021 20.1 3.4 54 55-111 33-86 (125)
311 3c1d_A Protein ORAA, regulator 29.1 1.1E+02 0.0039 19.4 7.6 33 20-52 45-77 (159)
312 2etb_A Transient receptor pote 28.5 57 0.0019 21.8 3.5 42 11-52 5-53 (256)
313 3l6a_A Eukaryotic translation 28.2 64 0.0022 23.8 3.9 60 56-116 14-75 (364)
314 3eyy_A Putative iron uptake re 28.0 48 0.0016 20.8 2.8 29 11-40 24-52 (145)
315 1wxp_A THO complex subunit 1; 27.7 75 0.0025 18.9 3.5 44 101-155 53-96 (110)
316 2hnh_A DNA polymerase III alph 27.3 2.6E+02 0.0088 23.6 7.6 74 11-86 727-810 (910)
317 3bqo_A Telomeric repeat-bindin 27.1 81 0.0028 21.4 3.8 23 11-33 123-145 (211)
318 4f52_E Glomulin; cullin-ring E 26.5 1.6E+02 0.0055 23.4 6.1 95 4-100 27-132 (596)
319 2keb_A DNA polymerase subunit 26.3 99 0.0034 18.4 3.7 34 21-54 25-58 (101)
320 3l8r_A PTCA, putative PTS syst 25.6 1.1E+02 0.0037 18.8 4.0 38 16-54 48-85 (120)
321 3kea_A K1L; tropism, ANK repea 25.4 1.6E+02 0.0056 20.1 5.5 13 101-113 138-150 (285)
322 3jxi_A Vanilloid receptor-rela 25.3 1.3E+02 0.0044 20.0 4.9 29 12-40 9-37 (260)
323 4aez_C MAD3, mitotic spindle c 25.1 83 0.0028 21.6 3.7 45 71-115 131-176 (223)
324 3f3f_C Nucleoporin NUP85; stru 25.1 42 0.0014 26.6 2.5 51 57-109 519-569 (570)
325 3qil_A Clathrin heavy chain 1; 24.4 1.3E+02 0.0045 18.6 5.0 52 93-156 36-87 (125)
326 3lvg_A Clathrin heavy chain 1; 24.3 3.9 0.00013 32.3 -3.3 81 55-152 55-135 (624)
327 2ijq_A Hypothetical protein; s 24.1 1.5E+02 0.0052 19.2 6.2 61 56-117 35-103 (161)
328 4b4t_R RPN7, 26S proteasome re 23.4 2.3E+02 0.008 21.1 8.2 96 8-117 134-236 (429)
329 2jp7_A MRNA export factor MEX6 23.4 29 0.001 18.3 0.9 27 63-90 27-54 (57)
330 2yqf_A Ankyrin-1; death domain 23.3 66 0.0023 19.1 2.7 42 103-155 56-97 (111)
331 3hzj_A Rabgap1L, RAB GTPase-ac 23.3 2E+02 0.0068 20.3 7.0 59 55-113 190-251 (310)
332 1fad_A Protein (FADD protein); 23.0 90 0.0031 17.9 3.2 41 104-155 53-93 (99)
333 3ezq_B Protein FADD; apoptosis 22.9 1E+02 0.0035 18.8 3.5 40 105-155 46-85 (122)
334 1w3w_A Annexin A8; coagulation 22.8 2.2E+02 0.0075 20.6 10.9 103 8-120 83-225 (327)
335 2hpi_A DNA polymerase III alph 22.8 2.1E+02 0.0071 25.1 6.3 64 56-122 780-867 (1220)
336 3lxu_X Tripeptidyl-peptidase 2 22.6 2E+02 0.007 25.5 6.3 68 70-148 1265-1332(1354)
337 2fq3_A Transcription regulator 22.6 1.3E+02 0.0045 17.9 4.4 30 5-36 67-96 (104)
338 1yii_A Annexin A5, annexin V, 22.5 2.2E+02 0.0075 20.4 8.6 84 22-113 18-129 (320)
339 1s3q_A Ferritin; ferroxidase, 22.5 1.6E+02 0.0055 18.9 4.8 93 21-115 53-159 (173)
340 1u60_A Probable glutaminase YB 22.5 96 0.0033 22.5 3.8 62 32-93 87-159 (310)
341 2bn5_A PSI; nuclear protein, s 22.4 51 0.0017 15.2 1.5 23 10-32 7-29 (33)
342 3pvs_A Replication-associated 21.7 2.6E+02 0.009 21.1 8.8 86 18-103 205-304 (447)
343 3us6_A Histidine-containing ph 21.4 1.6E+02 0.0056 18.6 8.4 108 8-119 10-123 (153)
344 2of5_H Leucine-rich repeat and 21.2 1.3E+02 0.0046 18.0 3.8 41 105-155 53-93 (118)
345 2qfz_A TBC1 domain family memb 21.0 1.9E+02 0.0064 20.8 5.2 62 55-116 245-313 (345)
346 1yii_A Annexin A5, annexin V, 21.0 2.4E+02 0.0081 20.3 10.6 84 8-97 76-198 (320)
347 3e3v_A Regulatory protein RECX 21.0 1.8E+02 0.0061 18.8 6.4 95 21-115 49-163 (177)
348 3m0z_A Putative aldolase; MCSG 20.8 80 0.0027 22.0 2.9 46 70-115 198-244 (249)
349 3r5e_A Transaldolase; pentose 20.8 1.8E+02 0.006 21.6 4.9 45 20-64 311-355 (360)
350 1top_A Troponin C; contractIle 20.6 1.5E+02 0.0051 17.8 9.9 104 30-144 45-159 (162)
351 4fhn_B Nucleoporin NUP120; pro 20.5 4.1E+02 0.014 22.8 9.8 133 8-154 902-1041(1139)
352 1dm5_A Annexin XII E105K mutan 20.5 2.4E+02 0.0082 20.2 7.5 40 55-96 72-111 (315)
353 1ixm_A SPO0B, protein (sporula 20.4 1.1E+02 0.0039 20.2 3.6 48 59-115 37-84 (192)
354 3ezx_A MMCP 1, monomethylamine 20.4 76 0.0026 21.4 2.8 41 65-105 13-53 (215)
355 4a1g_A Mitotic checkpoint seri 20.3 1.2E+02 0.0042 19.3 3.6 34 8-41 104-137 (152)
356 3aji_A 26S proteasome non-ATPa 20.2 65 0.0022 21.0 2.4 19 12-30 10-28 (231)
357 3lpz_A GET4 (YOR164C homolog); 20.0 2.6E+02 0.009 20.4 11.5 27 28-54 82-108 (336)
358 2dod_A Transcription elongatio 20.0 1.1E+02 0.0036 17.4 2.9 45 70-115 16-66 (82)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.2e-33 Score=217.05 Aligned_cols=141 Identities=13% Similarity=0.093 Sum_probs=134.2
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc------------------------------c
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------------------------V 55 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~------------------------------~ 55 (156)
..++.+|.+|++.|++++|.++|++|.+.|++||..+||+||.+|++.+ .
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3588899999999999999999999999999999999999999998764 7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhh
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVV 135 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~ 135 (156)
|||+||.+|++.|++++|.++|++|++.|+.||..|||++|.+|++.|++++|.++|++| .+.| +.||..|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M-~~~G--------~~Pd~~t 177 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM-VESE--------VVPEEPE 177 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTT--------CCCCHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH-HhcC--------CCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 5555 7999999
Q ss_pred HHHHHHHHhhcCCHhHHhhh
Q 041561 136 WGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~~ 155 (156)
|++||.+|++.|++++|.++
T Consensus 178 y~~Li~~~~~~g~~d~A~~l 197 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKT 197 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHH
Confidence 99999999999999999875
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.4e-31 Score=207.15 Aligned_cols=139 Identities=11% Similarity=0.135 Sum_probs=131.0
Q ss_pred CCCCcccHHHHHHHhcCCCc---------hHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-----------------
Q 041561 1 VYPTQFPFTTVLSSCAKLSS---------LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------- 54 (156)
Q Consensus 1 ~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----------------- 54 (156)
++||..|||++|.+|++.+. ++.|.++|++|.+.|+.||..+||+||++|++.|
T Consensus 57 v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~ 136 (501)
T 4g26_A 57 VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI 136 (501)
T ss_dssp CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 58999999999999987654 6889999999999999999999999999999999
Q ss_pred ----chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCC
Q 041561 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYK 130 (156)
Q Consensus 55 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~ 130 (156)
.+||+||.+|++.|++++|.++|++|.+.|+.||..||++||++|++.|++++|.+++++| ++.| ..
T Consensus 137 ~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M-r~~g--------~~ 207 (501)
T 4g26_A 137 QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL-RDLV--------RQ 207 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHT--------SS
T ss_pred CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH-HHhC--------CC
Confidence 8999999999999999999999999999999999999999999999999999999999999 5555 79
Q ss_pred CChhhHHHHHHHHhhcCC
Q 041561 131 DDLVVWGDLVSSCQVHSN 148 (156)
Q Consensus 131 pd~~~~~~li~~~~~~g~ 148 (156)
|+..||++++..|+..+.
T Consensus 208 ps~~T~~~l~~~F~s~~a 225 (501)
T 4g26_A 208 VSKSTFDMIEEWFKSEVA 225 (501)
T ss_dssp BCHHHHHHHHHHHHSHHH
T ss_pred cCHHHHHHHHHHHhcCcc
Confidence 999999999999987543
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.92 E-value=5.1e-26 Score=185.57 Aligned_cols=127 Identities=13% Similarity=0.122 Sum_probs=115.9
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHH---HhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIV---KDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~---~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
.|||++|++|++.|++++|.++|++|. +.|+.||+ +|||+||++||+.|++++|.++|++|.+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv--------------vTYNtLI~Glck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL--------------DMYNAVMLGWARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH--------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH--------------hHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 589999999999999999999998876 46899999 8888999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhhcCCCch-HHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 83 SGVKHDGVTFVAILTPCSHSGLV-YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 83 ~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.|+.||.+|||++|+++++.|+. ++|.++|++| .+.| +.||..+|+++|+++.+.+-++..+++
T Consensus 194 ~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM-~~kG--------~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM-SQEG--------LKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHH-HHHT--------CCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred cCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcC--------CCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999999999999999985 7899999999 5555 799999999999998888777766654
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=148.96 Aligned_cols=92 Identities=9% Similarity=0.006 Sum_probs=84.6
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIA---SGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD 131 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p 131 (156)
.|||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++| .+.| +.|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM-~~~G--------~~P 198 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV-KDAG--------LTP 198 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHTT--------CCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH-HHcC--------CCC
Confidence 7999999999999999999999998874 589999999999999999999999999999999 5555 799
Q ss_pred ChhhHHHHHHHHhhcCCH-hHHhhh
Q 041561 132 DLVVWGDLVSSCQVHSNV-RLAKKA 155 (156)
Q Consensus 132 d~~~~~~li~~~~~~g~~-~~a~~~ 155 (156)
|.+|||+||.++++.|+. ++|.++
T Consensus 199 DvvTYntLI~glcK~G~~~e~A~~L 223 (1134)
T 3spa_A 199 DLLSYAAALQCMGRQDQDAGTIERC 223 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 999999999999999985 677654
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.54 E-value=1.7e-13 Score=107.16 Aligned_cols=139 Identities=11% Similarity=-0.066 Sum_probs=87.5
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGY 64 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~ 64 (156)
..+|+.+...+.+.|+.++|.++|+.+.+.+ +.+..+|+.+..+|.+.| .+|+.+...|
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3455555555666666666666665555432 235555555655555555 4566677777
Q ss_pred HcCCCHHHHHHHHHHHHHC----CCCcc--HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHH
Q 041561 65 AENEYVEQAISLYKDIIAS----GVKHD--GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGD 138 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~----g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~ 138 (156)
.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++|+.+.+. ...+..+|..
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~p~~~~~~~~ 555 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL----------STNDANVHTA 555 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------SSCCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------CCCChHHHHH
Confidence 7777777777777776554 55666 556777777777777777777777766332 1336677777
Q ss_pred HHHHHhhcCCHhHHhh
Q 041561 139 LVSSCQVHSNVRLAKK 154 (156)
Q Consensus 139 li~~~~~~g~~~~a~~ 154 (156)
+..+|.+.|++++|.+
T Consensus 556 l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 556 IALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCHHHHHH
Confidence 7777777777777765
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.52 E-value=1.9e-13 Score=106.82 Aligned_cols=142 Identities=15% Similarity=0.056 Sum_probs=91.5
Q ss_pred CCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCC---------------------------------CCchHHHhHHHHH
Q 041561 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY---------------------------------GNDIFVGSAPINI 49 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~---------------------------------~~~~~~~~~li~~ 49 (156)
+++.+|+.+...+.+.|++++|.++|+.+.+.+. +.+..+|+.+...
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 4555666666666666666666666666654331 2345566666666
Q ss_pred hhhcc--------------------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHH
Q 041561 50 YCNCG--------------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEV 109 (156)
Q Consensus 50 ~~~~~--------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 109 (156)
|.+.| .+|+.++.+|.+.|++++|.++|++|.+.+ ..+..+|+.+..+|.+.|++++|.
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 66665 466777777777777777777777766543 235666777777777777777777
Q ss_pred HHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 110 EIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 110 ~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
++|+.+... ...+..+|+.+...|.+.|++++|.++
T Consensus 462 ~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 462 EYLQSSYAL----------FQYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp HHHHHHHHH----------CCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHh----------CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 777776432 234677788888888888888877653
No 7
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.06 E-value=1.7e-10 Score=88.11 Aligned_cols=126 Identities=14% Similarity=0.178 Sum_probs=35.1
Q ss_pred CCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------chHHHHHHHHHcCC
Q 041561 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------VTWNEMIHGYAENE 68 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------~~~~~li~~~~~~g 68 (156)
||..+|..+++++...|++++|...+...++. .+++.+.+.|+.+|.+.| .+|+.+-..|...|
T Consensus 59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g 136 (449)
T 1b89_A 59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK 136 (449)
T ss_dssp ----------------------------------------------------CHHHHTTTTTCC----------------
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcC
Confidence 56677888888888888888888877766653 456777888888888887 35555666666666
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCC
Q 041561 69 YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSN 148 (156)
Q Consensus 69 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~ 148 (156)
++++|...|..+ ..|..+.+++.+.|++++|.+.+... .++.+|..++.+|...|+
T Consensus 137 ~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA---------------~~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 137 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---------------NSTRTWKEVCFACVDGKE 192 (449)
T ss_dssp CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH---------------TCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc---------------CCchhHHHHHHHHHHcCc
Confidence 666666666544 25555555555666666555555544 145566666666666666
Q ss_pred HhHHhh
Q 041561 149 VRLAKK 154 (156)
Q Consensus 149 ~~~a~~ 154 (156)
+++|..
T Consensus 193 f~lA~~ 198 (449)
T 1b89_A 193 FRLAQM 198 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 8
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.04 E-value=8.6e-09 Score=74.71 Aligned_cols=141 Identities=11% Similarity=0.007 Sum_probs=109.7
Q ss_pred CCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCC-chHHHhHHHHHhhhcc---------------chHHHHHHHHHc
Q 041561 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG---------------VTWNEMIHGYAE 66 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~---------------~~~~~li~~~~~ 66 (156)
|+..++..+...+.+.++.++|.+.++.+...+..| +...+..+-..|.+.| ..+..+...|.+
T Consensus 63 ~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLK 142 (291)
T ss_dssp HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 456678888889999999999999999998877656 4455555557777777 567888899999
Q ss_pred CCCHHHHHHHHHHHHHCCCCccHHHH---HHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHH
Q 041561 67 NEYVEQAISLYKDIIASGVKHDGVTF---VAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~ 143 (156)
.|++++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++... ...+...|+.+-.++
T Consensus 143 ~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----------~p~~~~~~~~la~~~ 210 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK----------CSPTLLLLNGQAACH 210 (291)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------SCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHH
Confidence 999999999999998754 554311 23345455678999999999999655 245788899999999
Q ss_pred hhcCCHhHHhhh
Q 041561 144 QVHSNVRLAKKA 155 (156)
Q Consensus 144 ~~~g~~~~a~~~ 155 (156)
...|++++|++.
T Consensus 211 ~~~g~~~eA~~~ 222 (291)
T 3mkr_A 211 MAQGRWEAAEGV 222 (291)
T ss_dssp HHTTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 999999998763
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.99 E-value=2.8e-08 Score=73.78 Aligned_cols=59 Identities=17% Similarity=0.252 Sum_probs=29.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
+|..+...|.+.|++++|.+.|+++.+... .+..+|..+...+.+.|++++|...|+.+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 297 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTA 297 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555555555555555555554321 12334445555555555555555555554
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.94 E-value=5e-08 Score=72.44 Aligned_cols=130 Identities=11% Similarity=0.083 Sum_probs=98.7
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCC-chHHHhHHHHHhhhcc--------------------chHHHHHHHHHcCCCHH
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCG--------------------VTWNEMIHGYAENEYVE 71 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~g~~~ 71 (156)
..+...|+.++|...++...+. .| +..++..+...|.+.| .+|..+...+.+.|+++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 288 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3333444444444444443332 23 4667777878887777 57888999999999999
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhH
Q 041561 72 QAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRL 151 (156)
Q Consensus 72 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~ 151 (156)
+|.+.|+++.+.. ..+..+++.+...+.+.|++++|...++.+.+. .+.+..+|..+...|.+.|++++
T Consensus 289 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 289 EAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV----------FPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS----------CTTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------CCCcHHHHHHHHHHHHHcCCHHH
Confidence 9999999998753 456778999999999999999999999998433 23467889999999999999999
Q ss_pred Hhhh
Q 041561 152 AKKA 155 (156)
Q Consensus 152 a~~~ 155 (156)
|.+.
T Consensus 358 A~~~ 361 (388)
T 1w3b_A 358 ALMH 361 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9763
No 11
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.93 E-value=6.6e-08 Score=65.84 Aligned_cols=140 Identities=6% Similarity=-0.074 Sum_probs=105.9
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGY 64 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~ 64 (156)
+..|..+...+.+.|++++|...++...+.. +.+...+..+...|.+.| ..|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3456677777888889999999888887653 235667777777777776 5677788888
Q ss_pred HcC-CCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHH
Q 041561 65 AEN-EYVEQAISLYKDIIASGVKHD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSS 142 (156)
Q Consensus 65 ~~~-g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~ 142 (156)
... |++++|.+.|+++.+.+..|+ ...+..+...+.+.|++++|...++..... ...+...|..+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA----------QPQFPPAFKELART 156 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCchHHHHHHHH
Confidence 888 999999999999887433343 567777888888899999999998888443 12357778888888
Q ss_pred HhhcCCHhHHhhh
Q 041561 143 CQVHSNVRLAKKA 155 (156)
Q Consensus 143 ~~~~g~~~~a~~~ 155 (156)
+...|++++|.+.
T Consensus 157 ~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 157 KMLAGQLGDADYY 169 (225)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHH
Confidence 8888888888753
No 12
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.92 E-value=4.7e-08 Score=60.95 Aligned_cols=123 Identities=9% Similarity=0.095 Sum_probs=100.0
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
.|..+...+.+.|++++|..+++.+.+... .+. ..|..+...+...|++++|.+.|+++...+ .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~--------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSA--------------EAWYNLGNAYYKQGDYDEAIEYYQKALELD-P 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCH--------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cch--------------hHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-C
Confidence 467778888899999999999999977532 233 456677788888999999999999998754 3
Q ss_pred ccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 87 HDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.+...+..+...+.+.|++++|.+.++.+... ...+..+|..+...+...|++++|.+.
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~ 125 (136)
T 2fo7_A 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------DPRSAEAWYNLGNAYYKQGDYDEAIEY 125 (136)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------CCCChHHHHHHHHHHHHHccHHHHHHH
Confidence 35667888889999999999999999998543 234678899999999999999999763
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.92 E-value=3e-08 Score=74.76 Aligned_cols=139 Identities=9% Similarity=-0.029 Sum_probs=106.3
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHH---
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEM--- 60 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~l--- 60 (156)
+..++..+...+.+.|+.++|...|+.+.+.. +.+..+|..+...|.+.| ..+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 45567777888888888888888888876642 345677888888888777 223333
Q ss_pred ---------HHHHHcCCCHHHHHHHHHHHHHCCCCcc-----HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcC
Q 041561 61 ---------IHGYAENEYVEQAISLYKDIIASGVKHD-----GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCL 126 (156)
Q Consensus 61 ---------i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~ 126 (156)
...+.+.|++++|.+.|+++.+. .|+ ...+..+...+.+.|++++|...++.+...
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-------- 324 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-------- 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 77888889999999999998773 333 347788888899999999999999987433
Q ss_pred CCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 127 MPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 127 ~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.+.+..+|..+..+|...|++++|.+.
T Consensus 325 --~p~~~~~~~~l~~~~~~~~~~~~A~~~ 351 (450)
T 2y4t_A 325 --EPDNVNALKDRAEAYLIEEMYDEAIQD 351 (450)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhcCHHHHHHH
Confidence 134678899999999999999998764
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.91 E-value=2.6e-08 Score=75.06 Aligned_cols=138 Identities=9% Similarity=-0.020 Sum_probs=108.1
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHG 63 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~ 63 (156)
++.++..+...+.+.|++++|..+|+.+.+. .+.+...+..+..+|.+.| ..|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3456788888899999999999999999875 2346888899989998888 678889999
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccH----HHHHHHHH------------hhcCCCchHHHHHHHHhcccccccCCCcCC
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDG----VTFVAILT------------PCSHSGLVYAEVEIFNSMEHDHEVKPKCLM 127 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~------------~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~ 127 (156)
|.+.|++++|.+.|+++.+.. |+. ..+..+.. .+.+.|++++|...|+.+...
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------- 172 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--------- 172 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------
Confidence 999999999999999998743 433 45555533 378899999999999998543
Q ss_pred CCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 128 PYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 128 ~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
...+..+|..+...|...|++++|.+
T Consensus 173 -~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 173 -CVWDAELRELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCGGGGHH
T ss_pred -CCCChHHHHHHHHHHHHCCCHHHHHH
Confidence 13356667777777777777777654
No 15
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.88 E-value=7.8e-08 Score=67.03 Aligned_cols=136 Identities=8% Similarity=-0.073 Sum_probs=69.8
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHc
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAE 66 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~ 66 (156)
.|..+-..+...|++++|...++.+.+.. +.+...+..+...|.+.| ..|..+...|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 34444455555566666666666655432 223445555555555544 345555555666
Q ss_pred CCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhh
Q 041561 67 NEYVEQAISLYKDIIASGVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV 145 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~ 145 (156)
.|++++|.+.|++..+.+..| +...+..+...+.+.|++++|...++...... ..+...|..+...|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----------~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN----------RNQPSVALEMADLLYK 187 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------SCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----------cccHHHHHHHHHHHHH
Confidence 666666666666655532333 33345555555556666666666666553221 1234444444444555
Q ss_pred cCCHhHHh
Q 041561 146 HSNVRLAK 153 (156)
Q Consensus 146 ~g~~~~a~ 153 (156)
.|++++|.
T Consensus 188 ~g~~~~A~ 195 (252)
T 2ho1_A 188 EREYVPAR 195 (252)
T ss_dssp TTCHHHHH
T ss_pred cCCHHHHH
Confidence 55554443
No 16
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.82 E-value=3.5e-07 Score=63.66 Aligned_cols=140 Identities=4% Similarity=-0.078 Sum_probs=112.6
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc----------------------chHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------------VTWNEMI 61 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----------------------~~~~~li 61 (156)
+..++..+-..+.+.|+.++|...++...+.. +.+...+..+...|.+.| ..|..+.
T Consensus 70 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la 148 (252)
T 2ho1_A 70 SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLG 148 (252)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHH
Confidence 44567777788888899999999999887653 235667777777777766 4567788
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHH
Q 041561 62 HGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141 (156)
Q Consensus 62 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~ 141 (156)
..+...|++++|.+.|++..+.. ..+...+..+...+.+.|+.++|...++..... ...+...|..+..
T Consensus 149 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~~~~ 217 (252)
T 2ho1_A 149 LVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQG----------GGQNARSLLLGIR 217 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----------SCCCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CcCcHHHHHHHHH
Confidence 88999999999999999988754 234678888999999999999999999998443 2456788899999
Q ss_pred HHhhcCCHhHHhhh
Q 041561 142 SCQVHSNVRLAKKA 155 (156)
Q Consensus 142 ~~~~~g~~~~a~~~ 155 (156)
.+...|+.++|.+.
T Consensus 218 ~~~~~g~~~~A~~~ 231 (252)
T 2ho1_A 218 LAKVFEDRDTAASY 231 (252)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHccCHHHHHHH
Confidence 99999999999764
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.81 E-value=7.3e-08 Score=70.90 Aligned_cols=82 Identities=15% Similarity=0.124 Sum_probs=44.7
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCC-ccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHH
Q 041561 63 GYAENEYVEQAISLYKDIIASGVK-HDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVS 141 (156)
Q Consensus 63 ~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~ 141 (156)
.+.+.|++++|.+.|+++.+.... ++..++..+...+.+.|++++|...|+..... .+.+..+|+.+-.
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~ 255 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV----------RPEDYSLWNRLGA 255 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHH
Confidence 444444444444444444432211 14556666666666777777777777666332 1234566666666
Q ss_pred HHhhcCCHhHHhh
Q 041561 142 SCQVHSNVRLAKK 154 (156)
Q Consensus 142 ~~~~~g~~~~a~~ 154 (156)
.|...|++++|.+
T Consensus 256 ~~~~~g~~~~A~~ 268 (365)
T 4eqf_A 256 TLANGDRSEEAVE 268 (365)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHH
Confidence 7777777666654
No 18
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.80 E-value=1.5e-08 Score=77.47 Aligned_cols=125 Identities=9% Similarity=-0.017 Sum_probs=78.1
Q ss_pred CCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc------------chHHHHHHHHHcCCCH
Q 041561 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------VTWNEMIHGYAENEYV 70 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~------------~~~~~li~~~~~~g~~ 70 (156)
|++.+.+.++.+|.+.|++++++++++ .|+..+|+.+-+.|...| ..|..+..++.+.|++
T Consensus 92 ~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~y 164 (449)
T 1b89_A 92 RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 164 (449)
T ss_dssp -----------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCH
T ss_pred ccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccH
Confidence 456778899999999999999888885 378889999999999888 7899999999999999
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHh
Q 041561 71 EQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVR 150 (156)
Q Consensus 71 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~ 150 (156)
++|.+.++.+ .+..+|..++.+|...|+++.|......+. ..||. ...++..|.+.|+++
T Consensus 165 q~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~------------~~ad~--l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 165 QAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV------------VHADE--LEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT------------TCHHH--HHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH------------hCHhh--HHHHHHHHHHCCCHH
Confidence 9999999988 378999999999999999999966655542 23444 457999999999999
Q ss_pred HHhh
Q 041561 151 LAKK 154 (156)
Q Consensus 151 ~a~~ 154 (156)
+|..
T Consensus 225 Eai~ 228 (449)
T 1b89_A 225 ELIT 228 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9954
No 19
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.78 E-value=3.2e-07 Score=63.24 Aligned_cols=140 Identities=8% Similarity=0.027 Sum_probs=104.5
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHG 63 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~ 63 (156)
+...+..+-..+.+.|+.++|...++...+.. +.+...+..+...|.+.| ..|..+...
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTV 134 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34566677777788888888888888887653 235667777777777666 557777788
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHH
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~ 143 (156)
+...|++++|.+.|++..+.. ..+...+..+...+.+.|++++|...++..... ...+..+|..+-..|
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQ----------DPGHADAFYNAGVTY 203 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH----------CTTCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CcccHHHHHHHHHHH
Confidence 888888888888888877643 234567777788888888888888888887443 234577888888889
Q ss_pred hhcCCHhHHhhh
Q 041561 144 QVHSNVRLAKKA 155 (156)
Q Consensus 144 ~~~g~~~~a~~~ 155 (156)
...|++++|.+.
T Consensus 204 ~~~~~~~~A~~~ 215 (243)
T 2q7f_A 204 AYKENREKALEM 215 (243)
T ss_dssp HHTTCTTHHHHH
T ss_pred HHccCHHHHHHH
Confidence 999998888753
No 20
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.71 E-value=3.6e-07 Score=63.11 Aligned_cols=136 Identities=12% Similarity=-0.055 Sum_probs=88.0
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhc-----------c--------------------
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-----------G-------------------- 54 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------~-------------------- 54 (156)
..+..+-..+.+.|+.++|...++...+.. +.+...+..+-..|.+. |
T Consensus 40 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 118 (217)
T 2pl2_A 40 EALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA 118 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence 445555566667777777777777776543 22445566666666655 5
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..|..+-..+...|++++|.+.|++..+.. .+...+..+-..+...|+.++|...|+..... -+.+..
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~P~~~~ 186 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ----------APKDLD 186 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------STTCHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCChH
Confidence 456667777778888888888888877655 56777777777888888888888888877433 133567
Q ss_pred hHHHHHHHHhhcCCHhHHhh
Q 041561 135 VWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~ 154 (156)
.+..+-..+...|++++|.+
T Consensus 187 ~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 187 LRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHccCHHHHHH
Confidence 77888888888888888765
No 21
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.68 E-value=9.3e-07 Score=61.28 Aligned_cols=86 Identities=8% Similarity=-0.027 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHH
Q 041561 58 NEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG 137 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~ 137 (156)
..+-..+...|++++|.+.|++..+.. ..+..++..+-..+.+.|++++|...++..... .+.+...|.
T Consensus 143 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------~~~~~~~~~ 211 (258)
T 3uq3_A 143 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK----------DPNFVRAYI 211 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------CHHHHHHHH
Confidence 344444555555555555555554432 123444555555555555555555555555222 122355555
Q ss_pred HHHHHHhhcCCHhHHhh
Q 041561 138 DLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 138 ~li~~~~~~g~~~~a~~ 154 (156)
.+-..|...|++++|.+
T Consensus 212 ~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 212 RKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhHHHHHH
Confidence 56666666666666554
No 22
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.67 E-value=1.2e-06 Score=59.51 Aligned_cols=139 Identities=8% Similarity=-0.085 Sum_probs=108.4
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhc-c----------------------chHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC-G----------------------VTWNEMI 61 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-~----------------------~~~~~li 61 (156)
...+..+...+...|+.++|...++...+.. +.+...+..+...|... | ..|..+.
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 120 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKG 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHH
Confidence 4566667777778888888888888876653 23566677777777777 6 4577788
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCC-CChhhHHHHH
Q 041561 62 HGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYK-DDLVVWGDLV 140 (156)
Q Consensus 62 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~-pd~~~~~~li 140 (156)
..+...|++++|.+.|++..+.. ..+...+..+...+.+.|+.++|...++..... .. .+...|..+.
T Consensus 121 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~~~~ 189 (225)
T 2vq2_A 121 ICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR----------VEVLQADDLLLGW 189 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------HCSCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCCHHHHHHHH
Confidence 88999999999999999988753 224677888889999999999999999998443 23 5777888888
Q ss_pred HHHhhcCCHhHHhhh
Q 041561 141 SSCQVHSNVRLAKKA 155 (156)
Q Consensus 141 ~~~~~~g~~~~a~~~ 155 (156)
..+...|+.++|.+.
T Consensus 190 ~~~~~~~~~~~a~~~ 204 (225)
T 2vq2_A 190 KIAKALGNAQAAYEY 204 (225)
T ss_dssp HHHHHTTCHHHHHHH
T ss_pred HHHHhcCcHHHHHHH
Confidence 999999999988753
No 23
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.67 E-value=8.3e-07 Score=58.30 Aligned_cols=136 Identities=12% Similarity=0.006 Sum_probs=96.2
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHcC
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAEN 67 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~ 67 (156)
|..+-..+...|+.++|...++.+.+.. +.+...+..+...|.+.| ..|..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 3344444555556666666555554321 123444555555554444 5677778888899
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcC
Q 041561 68 EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHS 147 (156)
Q Consensus 68 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g 147 (156)
|++++|.+.|++..+.. ..+...+..+...+.+.|++++|...++..... ...+...|..+...|...|
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL----------RPNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc----------CccchHHHHHHHHHHHHcC
Confidence 99999999999987753 335677888888899999999999999988544 2346788999999999999
Q ss_pred CHhHHhhh
Q 041561 148 NVRLAKKA 155 (156)
Q Consensus 148 ~~~~a~~~ 155 (156)
++++|.+.
T Consensus 159 ~~~~A~~~ 166 (186)
T 3as5_A 159 RHEEALPH 166 (186)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99998763
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.66 E-value=2.2e-06 Score=62.74 Aligned_cols=139 Identities=10% Similarity=0.001 Sum_probs=91.9
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGY 64 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~ 64 (156)
...+..+-..+.+.|++++|...++.+.+.. +.+...+..+-..|.+.| ..|..+...|
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 142 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4556666667777777777777777776643 235566666666666666 4566666667
Q ss_pred HcCCCHHHHHHHHHHHHHCCC-----------------------------------------------Cc---cHHHHHH
Q 041561 65 AENEYVEQAISLYKDIIASGV-----------------------------------------------KH---DGVTFVA 94 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~-----------------------------------------------~p---~~~t~~~ 94 (156)
...|++++|.+.|+++.+... .| +..++..
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 777777777766666554221 12 4667777
Q ss_pred HHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 95 ILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 95 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
+...+.+.|++++|...++..... ...+..+|..+-..|...|++++|.+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSV----------RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh----------CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 778888888888888888877433 12345677777777777777777764
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.1e-06 Score=60.97 Aligned_cols=136 Identities=9% Similarity=-0.031 Sum_probs=102.9
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc---------------------------chHHH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------------------VTWNE 59 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---------------------------~~~~~ 59 (156)
+|..+-..+.+.|++++|...|+...+.. .+...+..+-..|.+.| ..|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45555666667777777777777776665 66677777777777666 34566
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCC------------------------CCc-cHHHHHHHHHhhcCCCchHHHHHHHHh
Q 041561 60 MIHGYAENEYVEQAISLYKDIIASG------------------------VKH-DGVTFVAILTPCSHSGLVYAEVEIFNS 114 (156)
Q Consensus 60 li~~~~~~g~~~~a~~~~~~m~~~g------------------------~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~ 114 (156)
+-..|...|++++|.+.|++..+.. ..| +...+..+-..+.+.|++++|...++.
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7778888888888888888877621 233 344677788888999999999999999
Q ss_pred cccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 115 MEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 115 m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
.... ...+..+|..+-..|...|++++|.+
T Consensus 165 a~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 165 MIKR----------APEDARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhc----------CcccHHHHHHHHHHHHHhCCHHHHHH
Confidence 8544 23467889999999999999999975
No 26
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.66 E-value=8.4e-07 Score=67.63 Aligned_cols=138 Identities=5% Similarity=-0.108 Sum_probs=115.8
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGY 64 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~ 64 (156)
..++..+-..+.+.|++++|...++.+.+... +...+..+...|.+.| ..|..+...|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHH
Confidence 34667777888899999999999999987653 3888888888888887 5788899999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHh
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQ 144 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~ 144 (156)
...|++++|.+.|++..+.... +..++..+...+.+.|++++|...++..... ...+..+|..+-..|.
T Consensus 315 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~la~~~~ 383 (514)
T 2gw1_A 315 FILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK----------FPEAPEVPNFFAEILT 383 (514)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH----------STTCSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------cccCHHHHHHHHHHHH
Confidence 9999999999999999875432 5668888999999999999999999998543 2346788999999999
Q ss_pred hcCCHhHHhhh
Q 041561 145 VHSNVRLAKKA 155 (156)
Q Consensus 145 ~~g~~~~a~~~ 155 (156)
..|++++|.+.
T Consensus 384 ~~~~~~~A~~~ 394 (514)
T 2gw1_A 384 DKNDFDKALKQ 394 (514)
T ss_dssp HTTCHHHHHHH
T ss_pred HCCCHHHHHHH
Confidence 99999999763
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.66 E-value=5.3e-07 Score=65.26 Aligned_cols=123 Identities=11% Similarity=0.010 Sum_probs=89.6
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc------------------chHHHH----HHHHHcCCCH
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------------VTWNEM----IHGYAENEYV 70 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~------------------~~~~~l----i~~~~~~g~~ 70 (156)
..+.+.|+.++|.+.++. +.+...+..+...|.+.| .+...+ +..+...|++
T Consensus 109 ~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~ 182 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKL 182 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHH
Confidence 555666777777666665 345666666666666665 112222 2333456899
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHh
Q 041561 71 EQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVR 150 (156)
Q Consensus 71 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~ 150 (156)
++|.++|+++.+. ...+...++.+-.++.+.|++++|...|++.... -+-+..+|..+...+...|+.+
T Consensus 183 ~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~----------~p~~~~~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 183 QDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK----------DSGHPETLINLVVLSQHLGKPP 251 (291)
T ss_dssp HHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCCH
Confidence 9999999999886 3457778999999999999999999999997443 1337788999999999999987
Q ss_pred HH
Q 041561 151 LA 152 (156)
Q Consensus 151 ~a 152 (156)
++
T Consensus 252 ea 253 (291)
T 3mkr_A 252 EV 253 (291)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.66 E-value=2.5e-07 Score=68.07 Aligned_cols=147 Identities=13% Similarity=0.049 Sum_probs=105.4
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCC-CchHHHhHHHHHhhhcc--------------------chHHHHHHHHHc
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYG-NDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAE 66 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~ 66 (156)
+..+-..+.+.|++++|...++.+.+..-. ++..++..+-..|.+.| .+|+.+...|..
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259 (365)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344567788889999999999998776432 26778888888888777 678999999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC--cCCCCCCChhhHHHHHHHHh
Q 041561 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK--CLMPYKDDLVVWGDLVSSCQ 144 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--c~~~~~pd~~~~~~li~~~~ 144 (156)
.|++++|.+.|++..+.. ..+..++..+-..+.+.|++++|...|+.......-..+ -......+..+|..+-.++.
T Consensus 260 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338 (365)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence 999999999999988753 224778888999999999999999999988432110000 00000113688999999999
Q ss_pred hcCCHhHHhhh
Q 041561 145 VHSNVRLAKKA 155 (156)
Q Consensus 145 ~~g~~~~a~~~ 155 (156)
..|+.+.+.++
T Consensus 339 ~~g~~~~a~~~ 349 (365)
T 4eqf_A 339 LMDQPELFQAA 349 (365)
T ss_dssp HHTCHHHHHHH
T ss_pred HcCcHHHHHHH
Confidence 99999988764
No 29
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.64 E-value=2.9e-07 Score=63.52 Aligned_cols=140 Identities=9% Similarity=0.046 Sum_probs=96.2
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHG 63 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~ 63 (156)
+..+|..+-..+.+.|+.++|...|+...+.. +.+...+..+...|.+.| ..|..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 34566777778889999999999999998743 345777777878887777 567788888
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHH
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~ 143 (156)
|...|++++|.+.|++..+.. ..+...+..+...+.+.|+.++|...++..... ...+...|..+...+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL----------NENDTEARFQFGMCL 169 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------CCccHHHHHHHHHHH
Confidence 999999999999999987754 235667888888888999999999999988443 234678888899999
Q ss_pred hhcCCHhHHhhh
Q 041561 144 QVHSNVRLAKKA 155 (156)
Q Consensus 144 ~~~g~~~~a~~~ 155 (156)
...|++++|.+.
T Consensus 170 ~~~~~~~~A~~~ 181 (243)
T 2q7f_A 170 ANEGMLDEALSQ 181 (243)
T ss_dssp HHHTCCHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 999999998763
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.63 E-value=2.4e-06 Score=56.81 Aligned_cols=139 Identities=9% Similarity=-0.025 Sum_probs=112.2
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHG 63 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~ 63 (156)
++..|..+=..+.+.|++++|...|+...+.. +-+...+..+-..|.+.| ..+..+-..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56678888888899999999999999987753 236677888888888877 556667778
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHH
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~ 143 (156)
+...++++++.+.+.+..+.. .-+...+..+-..+.+.|++++|.+.|+...+. -+.+..+|..+=..|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~----------~p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI----------KPGFIRAYQSIGLAY 151 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh----------cchhhhHHHHHHHHH
Confidence 888999999999999887643 224567777888888999999999999988443 134678899999999
Q ss_pred hhcCCHhHHhh
Q 041561 144 QVHSNVRLAKK 154 (156)
Q Consensus 144 ~~~g~~~~a~~ 154 (156)
...|++++|.+
T Consensus 152 ~~~g~~~~A~~ 162 (184)
T 3vtx_A 152 EGKGLRDEAVK 162 (184)
T ss_dssp HHTTCHHHHHH
T ss_pred HHCCCHHHHHH
Confidence 99999999976
No 31
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.63 E-value=9.3e-07 Score=63.48 Aligned_cols=138 Identities=9% Similarity=-0.144 Sum_probs=72.5
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYA 65 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~ 65 (156)
..|..+-..+...|+.++|...++...+..- .+...+..+-..|.+.| ..|..+...+.
T Consensus 126 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 204 (330)
T 3hym_B 126 PAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF 204 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 3444455555555555555555555544321 12333333444444444 44555566666
Q ss_pred cCCCHHHHHHHHHHHHHCC--------CCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHH
Q 041561 66 ENEYVEQAISLYKDIIASG--------VKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWG 137 (156)
Q Consensus 66 ~~g~~~~a~~~~~~m~~~g--------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~ 137 (156)
..|++++|.+.|++..+.. ...+..++..+-..+.+.|++++|...++..... ...+...|.
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----------~~~~~~~~~ 274 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL----------IPQNASTYS 274 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTCSHHHH
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh----------CccchHHHH
Confidence 6666666666666654321 1222345555666666666666666666655322 123455666
Q ss_pred HHHHHHhhcCCHhHHhh
Q 041561 138 DLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 138 ~li~~~~~~g~~~~a~~ 154 (156)
.+-..|...|++++|.+
T Consensus 275 ~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 275 AIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhccHHHHHH
Confidence 66666666777666654
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.60 E-value=8.6e-07 Score=63.59 Aligned_cols=128 Identities=12% Similarity=0.057 Sum_probs=104.9
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHcCCCHHHHH
Q 041561 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAENEYVEQAI 74 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~g~~~~a~ 74 (156)
+...|+.++|...++.+.+.. +.+...+..+...|.+.| ..|..+...+...|++++|.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 667788888888888887654 236677777877887777 56888999999999999999
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-------------ChhhHHHHHH
Q 041561 75 SLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-------------DLVVWGDLVS 141 (156)
Q Consensus 75 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-------------d~~~~~~li~ 141 (156)
+.|++..+.. ..+..++..+...+.+.|++++|.+.++..... .| +..+|..+..
T Consensus 227 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 227 DAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM-----------QVGGTTPTGEASREATRSMWDFFRM 294 (327)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HTTSCC-----CCTHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------CCccccccccchhhcCHHHHHHHHH
Confidence 9999987753 235678888999999999999999999988443 23 4788999999
Q ss_pred HHhhcCCHhHHhhh
Q 041561 142 SCQVHSNVRLAKKA 155 (156)
Q Consensus 142 ~~~~~g~~~~a~~~ 155 (156)
++...|+.++|.++
T Consensus 295 ~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 295 LLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHhcCCHHHHHHH
Confidence 99999999999875
No 33
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.59 E-value=1.3e-06 Score=63.86 Aligned_cols=116 Identities=15% Similarity=0.081 Sum_probs=79.1
Q ss_pred chHHHhHHHHHhhhcc--------------------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHh
Q 041561 39 DIFVGSAPINIYCNCG--------------------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTP 98 (156)
Q Consensus 39 ~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 98 (156)
+..++..+-..|.+.| ..|..+...+...|++++|.+.|++..+.. ..+..++..+-..
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 294 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGIS 294 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3566666666666666 567778888888888888888888877643 2345677778888
Q ss_pred hcCCCchHHHHHHHHhcccccccCCC-cCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 99 CSHSGLVYAEVEIFNSMEHDHEVKPK-CLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 99 ~~~~~~~~~a~~~~~~m~~~~~~~~~-c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
+.+.|++++|...|+.......-..+ -.........+|..+..+|...|+.++|.++
T Consensus 295 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 295 CINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 88888888888888877432100000 0000001268899999999999999999864
No 34
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.58 E-value=2.3e-06 Score=61.41 Aligned_cols=149 Identities=8% Similarity=-0.060 Sum_probs=104.3
Q ss_pred CcccHHHHHHHhcCCC-chHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLS-SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIH 62 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~ 62 (156)
+...|..+-..+...| +.++|...++...+.. +.+...|..+-..|.+.| ..+..+..
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3455666666777777 7778888887776543 234566677777776666 45666778
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHH
Q 041561 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSS 142 (156)
Q Consensus 63 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~ 142 (156)
.|...|++++|.+.|++..+.. ..+...+..+...+.+.|++++|...++.......-..+ ......+..+|..+-..
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN-EVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC-SCTTTTCCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc-cccccHHHHHHHHHHHH
Confidence 8888889999999888887643 234667888888888999999999888877432100000 00013346789999999
Q ss_pred HhhcCCHhHHhhh
Q 041561 143 CQVHSNVRLAKKA 155 (156)
Q Consensus 143 ~~~~g~~~~a~~~ 155 (156)
|...|++++|.+.
T Consensus 246 ~~~~g~~~~A~~~ 258 (330)
T 3hym_B 246 CRKLKKYAEALDY 258 (330)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHHhcCHHHHHHH
Confidence 9999999999763
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.57 E-value=1.8e-06 Score=59.57 Aligned_cols=141 Identities=12% Similarity=-0.035 Sum_probs=107.1
Q ss_pred CCCCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHH
Q 041561 1 VYPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEM 60 (156)
Q Consensus 1 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~l 60 (156)
+++++..+..+-..+.+.|+.++|...|+...+.. +.+...+..+-..|.+.| ..|..+
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 46778888888889999999999999999987753 235667777777777766 466777
Q ss_pred HHHHHcC-----------CCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCC
Q 041561 61 IHGYAEN-----------EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPY 129 (156)
Q Consensus 61 i~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~ 129 (156)
-..+... |++++|.+.|++..+... -+...+..+-..+.+.|+.++|...|++..+. -
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~ 148 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALAL----------E 148 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------C
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----------c
Confidence 7777777 888888888888876432 13556777777888889999999888887443 2
Q ss_pred CCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 130 KDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 130 ~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
.+...|..+-..|...|++++|.+
T Consensus 149 -~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 149 -DTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred -cchHHHHHHHHHHHHcCCHHHHHH
Confidence 567788888888999999988875
No 36
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.48 E-value=3.2e-06 Score=64.36 Aligned_cols=141 Identities=8% Similarity=-0.094 Sum_probs=108.7
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHG 63 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~ 63 (156)
+..+|..+...+.+.|+.++|...++...+... .+...+..+...|.+.| ..|..+...
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 381 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI 381 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 445677777778888888888888888776532 35567777777777776 567888889
Q ss_pred HHcCCCHHHHHHHHHHHHHCC-CCcc----HHHHHHHHHhhcC---CCchHHHHHHHHhcccccccCCCcCCCCCCChhh
Q 041561 64 YAENEYVEQAISLYKDIIASG-VKHD----GVTFVAILTPCSH---SGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVV 135 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~ 135 (156)
|.+.|++++|.+.|+++.+.. -.|+ ..++..+...+.+ .|++++|...++..... ...+..+
T Consensus 382 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~----------~~~~~~~ 451 (514)
T 2gw1_A 382 LTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL----------DPRSEQA 451 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH----------CTTCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh----------CcccHHH
Confidence 999999999999999987632 1222 3478888888888 99999999999988443 2346788
Q ss_pred HHHHHHHHhhcCCHhHHhhh
Q 041561 136 WGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~~ 155 (156)
|..+-..|...|++++|.+.
T Consensus 452 ~~~la~~~~~~g~~~~A~~~ 471 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITL 471 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHH
Confidence 89999999999999999763
No 37
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.48 E-value=5.9e-06 Score=59.80 Aligned_cols=142 Identities=8% Similarity=-0.053 Sum_probs=106.0
Q ss_pred CCc-ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCc-hH-HHhHHHHHhhhcc--------------------chHHH
Q 041561 3 PTQ-FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND-IF-VGSAPINIYCNCG--------------------VTWNE 59 (156)
Q Consensus 3 p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~~--------------------~~~~~ 59 (156)
|+. ..|..+...+.+.|++++|..+|+...+. .|+ .. .|..+...+.+.| ..|..
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 173 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 173 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 443 46888888888999999999999999873 454 33 7888888877766 12221
Q ss_pred HHHH-HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC--ChhhH
Q 041561 60 MIHG-YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD--DLVVW 136 (156)
Q Consensus 60 li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p--d~~~~ 136 (156)
.... +...|++++|.++|++..+... -+...|..+++.+.+.|+.++|+.+|+....... +.| ....|
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~--------l~p~~~~~l~ 244 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS--------LPPEKSGEIW 244 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS--------SCGGGCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC--------CCHHHHHHHH
Confidence 1111 1236999999999999876421 2567888899999999999999999999854311 244 46789
Q ss_pred HHHHHHHhhcCCHhHHhhh
Q 041561 137 GDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 137 ~~li~~~~~~g~~~~a~~~ 155 (156)
..++..+...|+.++|.++
T Consensus 245 ~~~~~~~~~~g~~~~a~~~ 263 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 9999999999999998764
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.47 E-value=3.8e-06 Score=60.20 Aligned_cols=138 Identities=7% Similarity=-0.117 Sum_probs=97.8
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHG 63 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~ 63 (156)
+...+...-..+.+.|++++|..+++.+.+.. +.+...+..+...|.+.| ..|..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 34556677778888999999999999987753 236677777777777777 567788888
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHH-HHHHH--------------HH-hhcCCCchHHHHHHHHhcccccccCCCcCC
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGV-TFVAI--------------LT-PCSHSGLVYAEVEIFNSMEHDHEVKPKCLM 127 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~l--------------l~-~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~ 127 (156)
|...|++++|.+.|++..+.. |+.. .+..+ -. .+...|++++|...++.....
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------- 167 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--------- 167 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH---------
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh---------
Confidence 999999999999999987643 2222 22222 12 366788888888888887443
Q ss_pred CCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 128 PYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 128 ~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
...+..+|..+...|...|++++|.+
T Consensus 168 -~~~~~~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 168 -NPNDAQLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 13356777777777777777777765
No 39
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.44 E-value=2.8e-06 Score=60.46 Aligned_cols=148 Identities=11% Similarity=0.048 Sum_probs=107.8
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHh-------CCCCchHHHhHHHHHhhhcc-----------------------
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKD-------GYGNDIFVGSAPINIYCNCG----------------------- 54 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~~----------------------- 54 (156)
..++..+-..+...|++++|...++...+. ........+..+-..|...|
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 355677778888889999999999888663 23334566677777777666
Q ss_pred -----chHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccC
Q 041561 55 -----VTWNEMIHGYAENEYVEQAISLYKDIIAS------GVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVK 122 (156)
Q Consensus 55 -----~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 122 (156)
..|..+...|...|++++|.+.|++..+. +-.| ....+..+-..+.+.|++++|.+.++.......-.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45777888999999999999999998753 3233 34567788888999999999999998884321000
Q ss_pred CCcCCCCCC-ChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 123 PKCLMPYKD-DLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 123 ~~c~~~~~p-d~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
..+..| ...+|..+-..|...|++++|.+.
T Consensus 187 ---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 217 (311)
T 3nf1_A 187 ---LGPDDPNVAKTKNNLASCYLKQGKFKQAETL 217 (311)
T ss_dssp ---SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ---hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 000122 346788899999999999999764
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.41 E-value=4.9e-06 Score=58.29 Aligned_cols=108 Identities=7% Similarity=-0.200 Sum_probs=73.4
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGY 64 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~ 64 (156)
..+|..+-..+...|+.++|...|+...+.. +.+...|..+-..|.+.| ..|..+...|
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 4566777777888888888888888887653 235667777777777766 5677777788
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
.+.|++++|.+.|++..+. .|+.......+..+...|+.++|...+...
T Consensus 122 ~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8888888888888887763 333333333344445556777777766544
No 41
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.40 E-value=8.5e-06 Score=58.92 Aligned_cols=139 Identities=8% Similarity=-0.041 Sum_probs=100.1
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGY 64 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~ 64 (156)
+..+..+-..+.+.|+.++|...|+.+.+.. +.+...+..+-..|.+.| ..|..+-..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3456666777788899999999999887753 235667777777777666 6788888999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCC--ccHHHHHHH------------HHhhcCCCchHHHHHHHHhcccccccCCCcCCCCC
Q 041561 65 AENEYVEQAISLYKDIIASGVK--HDGVTFVAI------------LTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYK 130 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~--p~~~t~~~l------------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~ 130 (156)
...|++++|.+.|++..+.... .+...+..+ ...+...|++++|...++...... +
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------~ 151 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC----------V 151 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------T
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------C
Confidence 9999999999999999874320 133344333 467788999999999999885431 3
Q ss_pred CChhhHHHHHHHHhhcCCHhHHhh
Q 041561 131 DDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 131 pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
.+...|..+-..+...|++++|.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~A~~ 175 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEPRKAIS 175 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHH
Confidence 355666666667777777766654
No 42
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.38 E-value=1.9e-05 Score=57.11 Aligned_cols=141 Identities=11% Similarity=-0.026 Sum_probs=101.7
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHH-----
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWN----- 58 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~----- 58 (156)
+...+..+-..+.+.|+.++|...++...+.. +.+...+..+-..|.+.| ..|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 231 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 44566677777788888888888888887653 346677777777777766 1121
Q ss_pred -------HHHHHHHcCCCHHHHHHHHHHHHHCCCC-ccH--HHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCC
Q 041561 59 -------EMIHGYAENEYVEQAISLYKDIIASGVK-HDG--VTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMP 128 (156)
Q Consensus 59 -------~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~ 128 (156)
.+...+.+.|++++|.+.|++..+.... |.. ..+..+-..+.+.|++++|...++.....
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---------- 301 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM---------- 301 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------
Confidence 2255688899999999999998774322 111 22445667888899999999999988443
Q ss_pred CCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 129 YKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 129 ~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.+.+..+|..+-..|...|++++|.+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~ 328 (359)
T 3ieg_A 302 EPDNVNALKDRAEAYLIEEMYDEAIQD 328 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 233778899999999999999998763
No 43
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.36 E-value=1.3e-05 Score=61.51 Aligned_cols=136 Identities=8% Similarity=-0.080 Sum_probs=108.8
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHc
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAE 66 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~ 66 (156)
++..+-..+...|++++|...++...+.. |+...+..+-..|.+.| ..|..+...+..
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence 35555566777888899999999887753 55777777777777776 678888999999
Q ss_pred CCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhc
Q 041561 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVH 146 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~ 146 (156)
.|++++|.+.|++..+... .+...+..+...+.+.|++++|...++..... ...+...|..+-..+...
T Consensus 323 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK----------FPTLPEVPTFFAEILTDR 391 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCTHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCChHHHHHHHHHHHHh
Confidence 9999999999999987532 23567888889999999999999999998544 234567899999999999
Q ss_pred CCHhHHhhh
Q 041561 147 SNVRLAKKA 155 (156)
Q Consensus 147 g~~~~a~~~ 155 (156)
|++++|.+.
T Consensus 392 g~~~~A~~~ 400 (537)
T 3fp2_A 392 GDFDTAIKQ 400 (537)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999999763
No 44
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.35 E-value=4e-06 Score=54.94 Aligned_cols=90 Identities=9% Similarity=-0.040 Sum_probs=75.6
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..|..+...+...|++++|.+.|++..+.. ..+...+..+...+.+.|++++|.+.++..... ...+..
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~ 111 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA----------NPINFN 111 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------CcHhHH
Confidence 678888999999999999999999988753 335677888888899999999999999988544 245778
Q ss_pred hHHHHHHHHhhcCCHhHHhhh
Q 041561 135 VWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~ 155 (156)
.|..+-..+...|++++|.+.
T Consensus 112 ~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 112 VRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHH
Confidence 899999999999999999764
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.33 E-value=8.5e-06 Score=57.03 Aligned_cols=128 Identities=7% Similarity=-0.070 Sum_probs=83.0
Q ss_pred hcCCCchHHHHHHHHHHHHhCCC---CchHHHhHHHHHhhhcc--------------------chHHHHHHHHHcCCCHH
Q 041561 15 CAKLSSLFLGRQILTRIVKDGYG---NDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAENEYVE 71 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~g~~---~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~g~~~ 71 (156)
....|+.++|...++.+.+.+.. .+...+..+-..|.+.| ..|..+-..|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 34668999999999999876421 24556666666666665 55666777777777777
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhH
Q 041561 72 QAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRL 151 (156)
Q Consensus 72 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~ 151 (156)
+|.+.|++..+.. ..+...+..+-..+.+.|++++|...++..... .|+...+..++..+...|++++
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 162 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-----------DPNDPFRSLWLYLAEQKLDEKQ 162 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------CCCChHHHHHHHHHHHhcCHHH
Confidence 7777777776632 123556666777777777777777777777332 3444444444444455566666
Q ss_pred Hhh
Q 041561 152 AKK 154 (156)
Q Consensus 152 a~~ 154 (156)
|.+
T Consensus 163 A~~ 165 (275)
T 1xnf_A 163 AKE 165 (275)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 46
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.33 E-value=9e-06 Score=59.51 Aligned_cols=127 Identities=9% Similarity=0.027 Sum_probs=91.6
Q ss_pred CCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
++..++..+-.++...|+.++|.+.+......|-.++.. ..+-.++..+.+.|+++.|.+.+++|.+
T Consensus 98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~l-------------ea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTT-------------ELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcH-------------HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344455566667777888888888888765544311121 5667788899999999999999999987
Q ss_pred CCCCc-----cHHHHHHHHHhhc----CCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHh
Q 041561 83 SGVKH-----DGVTFVAILTPCS----HSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAK 153 (156)
Q Consensus 83 ~g~~p-----~~~t~~~ll~~~~----~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~ 153 (156)
. .| +..+...+..+.. ..++.++|..+|+++..+ .|+..+-..+++++.+.|++++|+
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-----------~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-----------FPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-----------SCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-----------CCCcccHHHHHHHHHHcCCHHHHH
Confidence 4 56 3566666665522 344999999999999543 466455555666999999999998
Q ss_pred hh
Q 041561 154 KA 155 (156)
Q Consensus 154 ~~ 155 (156)
++
T Consensus 232 ~~ 233 (310)
T 3mv2_B 232 GI 233 (310)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 47
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.33 E-value=2.3e-05 Score=47.84 Aligned_cols=97 Identities=9% Similarity=0.137 Sum_probs=79.7
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASG 84 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 84 (156)
..+|..+-..+.+.|+.+.|...++.+.+.. +.+. ..|..+...+.+.|++++|.+.|+++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~--------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNA--------------EAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcH--------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 3567778888999999999999999997753 1233 566777888899999999999999998753
Q ss_pred CCccHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 85 VKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 85 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
..+..++..+...+.+.|++++|...++....
T Consensus 74 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 74 -PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33567888889999999999999999998844
No 48
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.30 E-value=8.7e-06 Score=57.85 Aligned_cols=150 Identities=9% Similarity=0.006 Sum_probs=104.3
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHh------CC-CCchHHHhHHHHHhhhcc------------------------
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKD------GY-GNDIFVGSAPINIYCNCG------------------------ 54 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~~------------------------ 54 (156)
.++..+-..+...|+.++|...++...+. +- ......+..+-..|...|
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34556666777788888888888877653 22 224556666666666666
Q ss_pred ----chHHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCcc-HHHHHHHHHhhcCCCchHHHHHHHHhccccc---c
Q 041561 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIAS------GVKHD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHDH---E 120 (156)
Q Consensus 55 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~ 120 (156)
..+..+-..|...|++++|.+.|++..+. +..|+ ..++..+-..+.+.|++++|...++...... +
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 229 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 45777888899999999999999998763 22343 3467888899999999999999998875321 0
Q ss_pred ---cCCC---------------------------------cCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 121 ---VKPK---------------------------------CLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 121 ---~~~~---------------------------------c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
..+. +......+..+|..+-..|...|++++|.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 300 (311)
T 3nf1_A 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300 (311)
T ss_dssp HC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0000 0000123457788999999999999999864
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.29 E-value=2.6e-05 Score=54.53 Aligned_cols=107 Identities=8% Similarity=0.012 Sum_probs=56.6
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-----------------------chHHHHHHH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------------------VTWNEMIHG 63 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-----------------------~~~~~li~~ 63 (156)
.+...-..+.+.|++++|...++...+... .+...+..+-..|.+.| ..|..+-..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 444555666778888888888888766421 23323333333333333 124555555
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
|...|++++|.+.|++..+... .+..++..+-..+.+.|++++|...++..
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred HHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555555555544221 12234555555555555555555555555
No 50
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.27 E-value=4.6e-05 Score=52.28 Aligned_cols=126 Identities=7% Similarity=-0.045 Sum_probs=98.2
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
|+..+...=..+.+.|+.++|...|+...+..-.++. ..|..+-.++...|++++|.+.|++..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 71 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS--------------VTAYNCGVCADNIKKYKEAADYFDIAIKK 71 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc--------------HHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence 4556667777788999999999999999886543555 34444777888999999999999998875
Q ss_pred CCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-Ch-------hhHHHHHHHHhhcCCHhHHhhh
Q 041561 84 GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DL-------VVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 84 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~-------~~~~~li~~~~~~g~~~~a~~~ 155 (156)
... +...+..+-..+.+.|+.++|...++..... .| +. ..|..+=..+...|++++|.+.
T Consensus 72 ~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 139 (228)
T 4i17_A 72 NYN-LANAYIGKSAAYRDMKNNQEYIATLTEGIKA-----------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEEN 139 (228)
T ss_dssp TCS-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred Ccc-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHH
Confidence 422 5567888889999999999999999988443 33 34 4567777788889999998763
No 51
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.27 E-value=2.9e-05 Score=56.12 Aligned_cols=128 Identities=8% Similarity=-0.074 Sum_probs=91.6
Q ss_pred CCCch-------HHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------c-hHHHHHHHHHcCC
Q 041561 17 KLSSL-------FLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------V-TWNEMIHGYAENE 68 (156)
Q Consensus 17 ~~~~~-------~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~-~~~~li~~~~~~g 68 (156)
+.|+. ++|..+|+...+.--+-+...|..+...+.+.| . .|..+...+.+.|
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 148 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE 148 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhc
Confidence 35776 899999999887312235567888888877766 2 6888888888888
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHhhc-CCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcC
Q 041561 69 YVEQAISLYKDIIASGVKHDGVTFVAILTPCS-HSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHS 147 (156)
Q Consensus 69 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g 147 (156)
++++|.++|++..+... ++...|........ ..|+.++|..+|+...+.. .-+...|..++..+.+.|
T Consensus 149 ~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~----------p~~~~~~~~~~~~~~~~g 217 (308)
T 2ond_A 149 GIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY----------GDIPEYVLAYIDYLSHLN 217 (308)
T ss_dssp CHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------CCcHHHHHHHHHHHHHCC
Confidence 89999999988876532 22333433332222 3688999999998875442 236788999999999999
Q ss_pred CHhHHhhh
Q 041561 148 NVRLAKKA 155 (156)
Q Consensus 148 ~~~~a~~~ 155 (156)
++++|+.+
T Consensus 218 ~~~~A~~~ 225 (308)
T 2ond_A 218 EDNNTRVL 225 (308)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99998764
No 52
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.22 E-value=2.9e-05 Score=63.08 Aligned_cols=136 Identities=10% Similarity=0.014 Sum_probs=109.6
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGY 64 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~ 64 (156)
+.+|+.+=..+.+.|+.++|.+.|++..+.. +-+...|+.|=..|.+.| ..|+.+-.+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567788888889999999999999987752 224677777877777777 6788888899
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-ChhhHHHHHHH
Q 041561 65 AENEYVEQAISLYKDIIASGVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSS 142 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~ 142 (156)
.+.|++++|.+.|++..+- .| +...|+.+-..+.+.|++++|.+.|++..+. .| +...|..+...
T Consensus 88 ~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-----------~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-----------KPDFPDAYCNLAHC 154 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CSCCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCChHHHhhhhhH
Confidence 9999999999999988764 33 4567888888899999999999999987432 34 56788889999
Q ss_pred HhhcCCHhHHhh
Q 041561 143 CQVHSNVRLAKK 154 (156)
Q Consensus 143 ~~~~g~~~~a~~ 154 (156)
|...|++++|.+
T Consensus 155 l~~~g~~~~A~~ 166 (723)
T 4gyw_A 155 LQIVCDWTDYDE 166 (723)
T ss_dssp HHHTTCCTTHHH
T ss_pred HHhcccHHHHHH
Confidence 999999988865
No 53
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.19 E-value=1.3e-05 Score=49.51 Aligned_cols=89 Identities=11% Similarity=0.165 Sum_probs=74.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhh
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVV 135 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~ 135 (156)
.|..+...+...|++++|.++|+++.+... .+...+..+...+.+.|++++|..+++..... ...+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~ 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------DPRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------CCCchHH
Confidence 467788899999999999999999987542 35667888888899999999999999998543 2346788
Q ss_pred HHHHHHHHhhcCCHhHHhhh
Q 041561 136 WGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~~ 155 (156)
|..+...+...|++++|.+.
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~ 91 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEY 91 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHH
Confidence 99999999999999999764
No 54
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.18 E-value=2.4e-05 Score=47.72 Aligned_cols=90 Identities=11% Similarity=0.185 Sum_probs=75.1
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..|..+...+...|++++|.+.|+++.+.. ..+..++..+...+.+.|+.++|...++..... ...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~ 78 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------DPNNAE 78 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------CCccHH
Confidence 456777888999999999999999998753 235678888889999999999999999998543 244778
Q ss_pred hHHHHHHHHhhcCCHhHHhhh
Q 041561 135 VWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~ 155 (156)
+|..+-..|...|++++|.+.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~ 99 (125)
T 1na0_A 79 AWYNLGNAYYKQGDYDEAIEY 99 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHH
Confidence 899999999999999999764
No 55
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.16 E-value=1.8e-05 Score=55.20 Aligned_cols=135 Identities=10% Similarity=0.015 Sum_probs=99.5
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHh------CCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKD------GYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYK 78 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 78 (156)
..++..+-..+...|++++|...++...+. +-.|+.. ..|..+-..|...|++++|.+.|+
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-------------~~~~~l~~~~~~~g~~~~A~~~~~ 109 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVA-------------ATLNNLAVLYGKRGKYKEAEPLCK 109 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH-------------HHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHH-------------HHHHHHHHHHHHhccHHHHHHHHH
Confidence 346777788888999999999999988654 2222221 567888899999999999999999
Q ss_pred HHHHC------CCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-ChhhHHHHHHHHhhcCCHh
Q 041561 79 DIIAS------GVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSSCQVHSNVR 150 (156)
Q Consensus 79 ~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~~~~~g~~~ 150 (156)
+.... .-.| ...++..+-..+...|++++|...++.......-. ..+-.| ...++..+-..|...|+++
T Consensus 110 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~ 186 (283)
T 3edt_B 110 RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR---LGPDDPNVAKTKNNLASCYLKQGKYQ 186 (283)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 98653 1123 35578888899999999999999999884331000 000123 3567888999999999999
Q ss_pred HHhhh
Q 041561 151 LAKKA 155 (156)
Q Consensus 151 ~a~~~ 155 (156)
+|.+.
T Consensus 187 ~A~~~ 191 (283)
T 3edt_B 187 DAETL 191 (283)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 56
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.14 E-value=5.5e-05 Score=46.48 Aligned_cols=119 Identities=8% Similarity=-0.037 Sum_probs=92.5
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASG 84 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 84 (156)
...+..+-..+...|+++.|...++...+.. +.+. ..|..+...+...|++++|.+.|++..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~--------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 76 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANA--------------VYFCNRAAAYSKLGNYAGAVQDCERAICID 76 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCH--------------HHHHHHHHHHHHhhchHHHHHHHHHHHhcC
Confidence 3456677778889999999999999987653 1233 556777888889999999999999988753
Q ss_pred CCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCH
Q 041561 85 VKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNV 149 (156)
Q Consensus 85 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~ 149 (156)
..+...+..+-..+.+.|+.++|...++..... .+.+...+..+-..+...|+.
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 77 -PAYSKAYGRMGLALSSLNKHVEAVAYYKKALEL----------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTCHHHHHHHHHHHHHHTTC
T ss_pred -ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----------CccchHHHHHHHHHHHHHhcC
Confidence 224667888888999999999999999988443 133677888888888887765
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.14 E-value=1.4e-05 Score=61.46 Aligned_cols=136 Identities=9% Similarity=-0.072 Sum_probs=73.7
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhc---------c--------------------ch
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNC---------G--------------------VT 56 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---------~--------------------~~ 56 (156)
..|..+-..+.+.|++++|...|+...+.. |+...+..+-..|.+. | ..
T Consensus 138 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 215 (474)
T 4abn_A 138 EAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215 (474)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 445555555566666666666666655432 4445555555555554 3 44
Q ss_pred HHHHHHHHHcC--------CCHHHHHHHHHHHHHCCCC--ccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcC
Q 041561 57 WNEMIHGYAEN--------EYVEQAISLYKDIIASGVK--HDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCL 126 (156)
Q Consensus 57 ~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~ 126 (156)
|..+-.+|... |++++|.+.|++..+.... -+...|..+-..+.+.|++++|.+.|+...+.
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-------- 287 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-------- 287 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 55555555555 5566666666665543210 24455555556666666666666666655322
Q ss_pred CCCCCChhhHHHHHHHHhhcCCHhHHh
Q 041561 127 MPYKDDLVVWGDLVSSCQVHSNVRLAK 153 (156)
Q Consensus 127 ~~~~pd~~~~~~li~~~~~~g~~~~a~ 153 (156)
-.-+...|..+-..+...|++++|.
T Consensus 288 --~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 288 --DPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1123445555556666666666554
No 58
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.12 E-value=0.0001 Score=57.09 Aligned_cols=140 Identities=8% Similarity=-0.007 Sum_probs=104.1
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCc--hHHHhHHHHHhhhcc------c-----------h---HHH-HH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND--IFVGSAPINIYCNCG------V-----------T---WNE-MI 61 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~------~-----------~---~~~-li 61 (156)
...|..+...+.+.|+.+.|..+|+...+. .|+ ...|..+...+.+.| . . |-. ..
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 556777788888899999999999999874 454 247888887777665 1 1 111 11
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCC--hhhHHHH
Q 041561 62 HGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD--LVVWGDL 139 (156)
Q Consensus 62 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd--~~~~~~l 139 (156)
-.+...|++++|.++|+...+.. .-+...|..+++.+.+.|+.++|+.+|+....... ..|+ ...|...
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~--------~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS--------LPPEKSGEIWARF 469 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC--------SCGGGCHHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC--------CCHHHHHHHHHHH
Confidence 12336899999999999887642 12467889999999999999999999999854321 2332 4589999
Q ss_pred HHHHhhcCCHhHHhhh
Q 041561 140 VSSCQVHSNVRLAKKA 155 (156)
Q Consensus 140 i~~~~~~g~~~~a~~~ 155 (156)
+.-....|+.+.+.++
T Consensus 470 ~~~e~~~G~~~~~~~~ 485 (530)
T 2ooe_A 470 LAFESNIGDLASILKV 485 (530)
T ss_dssp HHHHHHSSCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHH
Confidence 9999999999988764
No 59
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.12 E-value=8.8e-05 Score=56.82 Aligned_cols=150 Identities=7% Similarity=-0.089 Sum_probs=81.8
Q ss_pred CCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHH
Q 041561 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIH 62 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~ 62 (156)
|+..+|..+-..+.+.|+++.|...++...+.. +.+..++..+-..|.+.| ..|..+..
T Consensus 274 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 352 (537)
T 3fp2_A 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLAC 352 (537)
T ss_dssp CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 444555566666666666666666666665542 224455555655665555 34555555
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCC-------------------
Q 041561 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKP------------------- 123 (156)
Q Consensus 63 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~------------------- 123 (156)
.|...|++++|.+.|++..+.. ..+...+..+-..+.+.|++++|...++.......-.+
T Consensus 353 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~ 431 (537)
T 3fp2_A 353 LLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554432 11223444444444555555555544444321100000
Q ss_pred ----------C--------c----CCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 124 ----------K--------C----LMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 124 ----------~--------c----~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
. + .. .+.+...|..+-..|...|++++|.+.
T Consensus 432 ~~~~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 432 SSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhccchhhhHhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 0 0 00 134678899999999999999999763
No 60
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.07 E-value=7.4e-05 Score=46.22 Aligned_cols=118 Identities=6% Similarity=-0.060 Sum_probs=89.0
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
+...|..+-..+.+.|++++|...++...+.. +.+. ..|..+-..|...|++++|.+.|++..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~--------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDA--------------KLYSNRAACYTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCH--------------HHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH--------------HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34567777788889999999999999987642 1233 56677788889999999999999998875
Q ss_pred CCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcC
Q 041561 84 GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHS 147 (156)
Q Consensus 84 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g 147 (156)
. ..+...+..+-..+.+.|++++|.+.|+..... ...+...+..+-..+...|
T Consensus 80 ~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 80 E-PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL----------DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CGGGTHHHHHHHHHHHHHT
T ss_pred C-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----------CCCchHHHHHHHHHHHHhc
Confidence 3 235667888888999999999999999988433 1224456666666666554
No 61
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.06 E-value=0.00024 Score=49.57 Aligned_cols=139 Identities=9% Similarity=-0.036 Sum_probs=102.8
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCc--hHHHhHHHHHhhhcc--------------------chHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND--IFVGSAPINIYCNCG--------------------VTWNEMIH 62 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~--------------------~~~~~li~ 62 (156)
...+..+-..+.+.|+.++|...++...+.+-.|+ ...|..+-..|.+.| ..|..+-.
T Consensus 37 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 116 (272)
T 3u4t_A 37 PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGS 116 (272)
T ss_dssp STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 44788888899999999999999999988442222 223677777777777 67889999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHH
Q 041561 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSS 142 (156)
Q Consensus 63 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~ 142 (156)
.|...|++++|.+.|++..+.. ..+...+..+-..+-..+++++|...|+...+. .+.+...|..+-..
T Consensus 117 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------~p~~~~~~~~~~~~ 185 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL----------KPNIYIGYLWRARA 185 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CccchHHHHHHHHH
Confidence 9999999999999999987652 223445555552344456999999999998543 12346777778888
Q ss_pred HhhcCC---HhHHhh
Q 041561 143 CQVHSN---VRLAKK 154 (156)
Q Consensus 143 ~~~~g~---~~~a~~ 154 (156)
+...|+ .++|.+
T Consensus 186 ~~~~~~~~~~~~A~~ 200 (272)
T 3u4t_A 186 NAAQDPDTKQGLAKP 200 (272)
T ss_dssp HHHHSTTCSSCTTHH
T ss_pred HHHcCcchhhHHHHH
Confidence 888887 666654
No 62
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.06 E-value=0.0001 Score=49.81 Aligned_cols=128 Identities=8% Similarity=-0.077 Sum_probs=93.1
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc
Q 041561 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD 88 (156)
Q Consensus 9 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 88 (156)
..+-..+.+.|++++|...++.. +.|+. ..|..+-..|.+.|++++|.+.|++..+.. ..+
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a----~~~~~--------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~ 70 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAV----QDPHS--------------RICFNIGCMYTILKNMTEAEKAFTRSINRD-KHL 70 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS----SSCCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH----cCCCh--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 34445667889999999999876 35555 567777888899999999999999987753 235
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC--c---CCCCCC-ChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 89 GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK--C---LMPYKD-DLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--c---~~~~~p-d~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
...+..+-..+.+.|++++|...|+.......-.+. . .....| +...|..+-..|...|++++|.+.
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHH
Confidence 667888889999999999999999988443110000 0 000111 236788888999999999999753
No 63
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.04 E-value=7.9e-05 Score=51.92 Aligned_cols=137 Identities=8% Similarity=0.002 Sum_probs=99.0
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhC------CCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDG------YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKD 79 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g------~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 79 (156)
.++..+-..+...|+.++|...+....+.. -.|+.. ..|..+-..|...|++++|.+.|++
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-------------~~~~~la~~~~~~g~~~~A~~~~~~ 152 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA-------------KQLNNLALLCQNQGKAEEVEYYYRR 152 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH-------------HHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHH-------------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467778888999999999999999886541 112221 5677888899999999999999999
Q ss_pred HHHC------CCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhccccc---cc---CCC-c--------------------
Q 041561 80 IIAS------GVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDH---EV---KPK-C-------------------- 125 (156)
Q Consensus 80 m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~---~~~-c-------------------- 125 (156)
..+. +-.| ...++..+-..+.+.|++++|...++...... +. .+. .
T Consensus 153 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (283)
T 3edt_B 153 ALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSA 232 (283)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHH
Confidence 8764 2233 34578888899999999999999998874321 00 000 0
Q ss_pred ------------CCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 126 ------------LMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 126 ------------~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.........+|..+-..|...|++++|.+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 274 (283)
T 3edt_B 233 PYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL 274 (283)
T ss_dssp ----------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 001122346788889999999999999764
No 64
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.04 E-value=6.5e-05 Score=58.24 Aligned_cols=127 Identities=9% Similarity=-0.014 Sum_probs=84.6
Q ss_pred CCchH-------HHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc---------------------chHHHHHHHHHcCCC
Q 041561 18 LSSLF-------LGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------------VTWNEMIHGYAENEY 69 (156)
Q Consensus 18 ~~~~~-------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---------------------~~~~~li~~~~~~g~ 69 (156)
.|+++ +|..+++...+.-.+.+...|..+...+.+.| ..|......+.+.|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence 68877 88999988875323346777777777777666 246666666777778
Q ss_pred HHHHHHHHHHHHHCCCC-ccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCC
Q 041561 70 VEQAISLYKDIIASGVK-HDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSN 148 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~ 148 (156)
+++|.++|++-.+.... +......+.+. +...|+.++|+.+|+...+. ..-+...|..++..+.+.|+
T Consensus 372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~-~~~~~~~~~A~~~~e~al~~----------~p~~~~~~~~~~~~~~~~g~ 440 (530)
T 2ooe_A 372 IKSGRMIFKKAREDARTRHHVYVTAALME-YYCSKDKSVAFKIFELGLKK----------YGDIPEYVLAYIDYLSHLNE 440 (530)
T ss_dssp HHHHHHHHHHHHTCTTCCTHHHHHHHHHH-HHHTCCHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHH-HHHcCChhHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHhCCC
Confidence 88888888877654211 11112222222 12477888888888877443 12357888889988889999
Q ss_pred HhHHhhh
Q 041561 149 VRLAKKA 155 (156)
Q Consensus 149 ~~~a~~~ 155 (156)
.++|+.+
T Consensus 441 ~~~Ar~~ 447 (530)
T 2ooe_A 441 DNNTRVL 447 (530)
T ss_dssp HHHHHHH
T ss_pred HhhHHHH
Confidence 9888764
No 65
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.03 E-value=0.00013 Score=46.99 Aligned_cols=123 Identities=9% Similarity=-0.020 Sum_probs=91.5
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
.+..+-..+...|+++.|...++...+... .+. ..|..+-..+...|++++|.+.|++..+.. .
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~--------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~ 78 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNA--------------IYYGNRSLAYLRTECYGYALGDATRAIELD-K 78 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCh--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 455566677889999999999999877531 233 566777788889999999999999987753 2
Q ss_pred ccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhH--HHHHHHHhhcCCHhHHhhh
Q 041561 87 HDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVW--GDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~--~~li~~~~~~g~~~~a~~~ 155 (156)
.+...+..+-..+.+.|+.++|...++...... ..+...+ -.+...+...|++++|.+.
T Consensus 79 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----------p~~~~~~~~~~~~~~~~~~~~~~~A~~~ 139 (166)
T 1a17_A 79 KYIKGYYRRAASNMALGKFRAALRDYETVVKVK----------PHDKDAKMKYQECNKIVKQKAFERAIAG 139 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------CCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356678888888899999999999999884431 2244455 3444447788999888753
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.97 E-value=9e-05 Score=57.02 Aligned_cols=125 Identities=13% Similarity=0.034 Sum_probs=101.7
Q ss_pred CcccHHHHHHHhcCCCch-HHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSL-FLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
+...+..+=..+...|+. ++|...|+...+.. |+.. ..|..+-..|...|++++|.+.|++..+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~-------------~a~~~lg~~~~~~g~~~~A~~~~~~al~ 165 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELV-------------EAWNQLGEVYWKKGDVTSAHTCFSGALT 165 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCH-------------HHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345666777788899999 99999999987753 4321 5677888889999999999999999887
Q ss_pred CCCCccHHHHHHHHHhhcCC---------CchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhc-------
Q 041561 83 SGVKHDGVTFVAILTPCSHS---------GLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVH------- 146 (156)
Q Consensus 83 ~g~~p~~~t~~~ll~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~------- 146 (156)
. .|+...+..+-..+.+. |++++|.+.+++..+. ..-+...|..+-.+|...
T Consensus 166 ~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~lg~~~~~~~~~~~~~ 233 (474)
T 4abn_A 166 H--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----------DVLDGRSWYILGNAYLSLYFNTGQN 233 (474)
T ss_dssp T--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred h--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHHHHhhccc
Confidence 5 47778888899999999 9999999999998443 234678899999999988
Q ss_pred -CCHhHHhhh
Q 041561 147 -SNVRLAKKA 155 (156)
Q Consensus 147 -g~~~~a~~~ 155 (156)
|++++|.+.
T Consensus 234 ~g~~~~A~~~ 243 (474)
T 4abn_A 234 PKISQQALSA 243 (474)
T ss_dssp HHHHHHHHHH
T ss_pred cchHHHHHHH
Confidence 889998753
No 67
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.92 E-value=0.00063 Score=40.43 Aligned_cols=100 Identities=8% Similarity=-0.053 Sum_probs=80.2
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
+...+..+-..+.+.|+.++|...++...+... .+. ..|..+-..+...|++++|.+.|++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~--------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 69 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EES--------------KYWLMKGKALYNLERYEEAVDCYNYVINV 69 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCH--------------HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 346677788888999999999999999877532 233 45667778889999999999999998875
Q ss_pred CCC-ccHHHHHHHHHhhcCC-CchHHHHHHHHhcccc
Q 041561 84 GVK-HDGVTFVAILTPCSHS-GLVYAEVEIFNSMEHD 118 (156)
Q Consensus 84 g~~-p~~~t~~~ll~~~~~~-~~~~~a~~~~~~m~~~ 118 (156)
... .+...+..+-..+.+. |+.++|.+.+......
T Consensus 70 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 70 IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 321 1467888888999999 9999999999998544
No 68
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.88 E-value=0.0011 Score=46.52 Aligned_cols=56 Identities=7% Similarity=0.081 Sum_probs=24.7
Q ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcC----CCchHHHHHHHHhc
Q 041561 57 WNEMIHGYAE----NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH----SGLVYAEVEIFNSM 115 (156)
Q Consensus 57 ~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m 115 (156)
+..+-..|.. .+++++|.+.|++..+.+ +...+..+-..+.+ .++.++|...|+..
T Consensus 113 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 176 (273)
T 1ouv_A 113 CASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKA 176 (273)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 3344444444 455555555555544433 22233333333333 44555555555444
No 69
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.85 E-value=0.00039 Score=49.82 Aligned_cols=140 Identities=9% Similarity=-0.062 Sum_probs=98.3
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHh----CCCCc-hHHHhHHHHHhhhcc--------------------------c
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKD----GYGND-IFVGSAPINIYCNCG--------------------------V 55 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~~--------------------------~ 55 (156)
.|......+...|++++|...|....+. |-.++ ..+|+.+-..|.+.| .
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3555556667788888888888876542 32222 456777777776665 3
Q ss_pred hHHHHHHHHHcC-CCHHHHHHHHHHHHHC----CCCcc-HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCC
Q 041561 56 TWNEMIHGYAEN-EYVEQAISLYKDIIAS----GVKHD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPY 129 (156)
Q Consensus 56 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~ 129 (156)
+|+.+-..|... |++++|.+.|++-.+- +-.+. ..++..+-..+.+.|++++|...|+....... -
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--------~ 190 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM--------G 190 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS--------S
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh--------c
Confidence 677788888886 9999999999987652 21111 34688888999999999999999998843311 1
Q ss_pred CCCh-----hhHHHHHHHHhhcCCHhHHhh
Q 041561 130 KDDL-----VVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 130 ~pd~-----~~~~~li~~~~~~g~~~~a~~ 154 (156)
.++. ..|..+-.++...|++++|.+
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1221 156777888999999999875
No 70
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.85 E-value=0.0003 Score=43.34 Aligned_cols=90 Identities=7% Similarity=-0.058 Sum_probs=74.7
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..|..+-..+...|++++|.+.|++..+.. ..+...+..+-..+.+.|++++|...++..... ...+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----------~~~~~~ 85 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL----------EPTFIK 85 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----------CTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------CCCchH
Confidence 567778888999999999999999988643 225678888888999999999999999988543 234678
Q ss_pred hHHHHHHHHhhcCCHhHHhhh
Q 041561 135 VWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~ 155 (156)
.|..+-..|...|++++|.+.
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~ 106 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDV 106 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 899999999999999999763
No 71
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.84 E-value=0.0014 Score=45.96 Aligned_cols=132 Identities=9% Similarity=-0.057 Sum_probs=90.5
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhh----cc------------------chHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCN----CG------------------VTWNEMIH 62 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~------------------~~~~~li~ 62 (156)
+.++..+=..+.+.|+.++|...|+...+. .+...+..+-..|.+ .+ ..+..+-.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 82 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345555666677788889999888888773 344555556555555 33 45666777
Q ss_pred HHHc----CCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcC----CCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 63 GYAE----NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH----SGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 63 ~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
.|.. .+++++|.+.|++..+.+ +...+..+-..+.+ .++.++|...|+...+. -+..
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~------------~~~~ 147 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL------------NDGD 147 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------------TCHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc------------CcHH
Confidence 7777 888999999888887765 56667777777777 88889998888877322 1344
Q ss_pred hHHHHHHHHhh----cCCHhHHhh
Q 041561 135 VWGDLVSSCQV----HSNVRLAKK 154 (156)
Q Consensus 135 ~~~~li~~~~~----~g~~~~a~~ 154 (156)
.+..+-..|.. .+++++|.+
T Consensus 148 a~~~lg~~~~~~~~~~~~~~~A~~ 171 (273)
T 1ouv_A 148 GCTILGSLYDAGRGTPKDLKKALA 171 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHH
Confidence 55555556665 677776654
No 72
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.83 E-value=0.00029 Score=55.06 Aligned_cols=124 Identities=6% Similarity=-0.045 Sum_probs=94.4
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASG 84 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 84 (156)
...|..+-..+.+.|+.++|...+++..+. .|+.. ..|..+-..|...|++++|.+.|++..+..
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~-------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 87 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHP-------------EAVARLGRVRWTQQRHAEAAVLLQQASDAA 87 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH-------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 455666677777888888888888888764 23321 566777788889999999999999987643
Q ss_pred CCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhc---CCHhHHhh
Q 041561 85 VKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVH---SNVRLAKK 154 (156)
Q Consensus 85 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~---g~~~~a~~ 154 (156)
.-+...+..+-..+.+.|+.++|.+.++...+. ...+...+..+-..+... |+.++|.+
T Consensus 88 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 88 -PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL----------LPEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 224567888888888999999999999988443 123567888888889888 89888875
No 73
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.82 E-value=9.8e-05 Score=45.37 Aligned_cols=114 Identities=9% Similarity=0.039 Sum_probs=85.6
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
..|..+-..+.+.|+++.|...++...+.. +.+. ..|..+-..|...|++++|.+.|++......
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~--------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNM--------------TYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH--------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccH--------------HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc
Confidence 456677778889999999999999987753 2233 5566777888899999999999999876421
Q ss_pred --Ccc----HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhh
Q 041561 86 --KHD----GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV 145 (156)
Q Consensus 86 --~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~ 145 (156)
.++ ..++..+-..+.+.|++++|.+.|+..... .|+...+..+-.....
T Consensus 70 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE-----------HRTPDVLKKCQQAEKI 124 (131)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------CCCHHHHHHHHHHHHH
Confidence 222 667888888899999999999999988432 4666666655554433
No 74
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.82 E-value=0.00044 Score=45.11 Aligned_cols=89 Identities=7% Similarity=-0.093 Sum_probs=72.2
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..|..+-..+.+.|++++|.+.|+...... .-+...|..+-.++.+.|++++|...|+..... -+-+..
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l----------~P~~~~ 105 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL----------GKNDYT 105 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------SSSCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----------CCCCcH
Confidence 456667778889999999999999998753 225667888888888999999999999988443 123567
Q ss_pred hHHHHHHHHhhcCCHhHHhh
Q 041561 135 VWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~ 154 (156)
.|..+=.+|...|++++|.+
T Consensus 106 ~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 106 PVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 88888899999999999976
No 75
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.80 E-value=0.00021 Score=42.59 Aligned_cols=90 Identities=11% Similarity=0.035 Sum_probs=72.8
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC--C
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD--D 132 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p--d 132 (156)
..|..+-..+...|++++|.+.|++..+... .+...+..+-..+.+.|++++|...++...+. ... +
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----------~~~~~~ 75 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINV----------IEDEYN 75 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------SCCTTC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------Ccccch
Confidence 3456677788899999999999999887532 35667888888889999999999999988443 123 5
Q ss_pred hhhHHHHHHHHhhc-CCHhHHhhh
Q 041561 133 LVVWGDLVSSCQVH-SNVRLAKKA 155 (156)
Q Consensus 133 ~~~~~~li~~~~~~-g~~~~a~~~ 155 (156)
...|..+-..+... |++++|.+.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~ 99 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIA 99 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHH
Confidence 78899999999999 999999763
No 76
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.79 E-value=0.00069 Score=44.60 Aligned_cols=111 Identities=11% Similarity=-0.045 Sum_probs=86.0
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHG 63 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~ 63 (156)
++.+|..+-..+.+.|+.++|...+........ .+...+..+-..+.+.+ ..+..+-..
T Consensus 38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~ 116 (184)
T 3vtx_A 38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLV 116 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 345677777888899999999999999876543 23444444444444444 567888899
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
|.+.|++++|.+.|++..+.. .-+..+|..+-..+.+.|+.++|.+.|++..
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 117 YDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999988753 2346678888899999999999999999873
No 77
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.78 E-value=0.00027 Score=51.89 Aligned_cols=132 Identities=8% Similarity=-0.148 Sum_probs=98.3
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCc---h---HHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND---I---FVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKD 79 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~---~---~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 79 (156)
..|..+=..+.+.|++++|...|+...+..-... . .....+. ...|..+-.+|.+.|++++|.+.|++
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~------~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALR------LASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHH------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHH------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455666677889999999999999877532111 0 0000000 05678888899999999999999999
Q ss_pred HHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 80 IIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 80 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
..+.. ..+...+..+-.++.+.|++++|...|+...+. -..+...+..+-..+...|+.++|.+
T Consensus 222 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----------~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 222 ALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL----------YPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88753 235678888889999999999999999988443 13366788888899999999988854
No 78
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.74 E-value=0.00057 Score=42.61 Aligned_cols=98 Identities=6% Similarity=-0.107 Sum_probs=79.3
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
+...|..+-..+.+.|+++.|...|....+.. |+.. ..|..+-..+...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~-------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 72 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVA-------------VYYTNRALCYLKMQQPEQALADCRRALEL 72 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcH-------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45677777888899999999999999987753 3321 56777788889999999999999998875
Q ss_pred CCCccHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 84 GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 84 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
.. .+...+..+-..+.+.|++++|...|.....
T Consensus 73 ~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 73 DG-QSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cc-hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 42 2566788888889999999999999998743
No 79
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.73 E-value=0.00041 Score=41.61 Aligned_cols=88 Identities=13% Similarity=0.020 Sum_probs=63.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhh
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVV 135 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~ 135 (156)
.|..+...+...|++++|.+.|++..... ..+...+..+-..+.+.|++++|...++..... ...+...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~ 74 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL----------KPDWGKG 74 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------CTTCHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh----------CcccHHH
Confidence 45566677778888888888888877643 224556677777777888888888888877433 1235677
Q ss_pred HHHHHHHHhhcCCHhHHhh
Q 041561 136 WGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~ 154 (156)
|..+-..+...|++++|.+
T Consensus 75 ~~~~a~~~~~~~~~~~A~~ 93 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKR 93 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 7778888888888888765
No 80
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.73 E-value=0.00095 Score=39.94 Aligned_cols=97 Identities=7% Similarity=-0.047 Sum_probs=77.4
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
++..+..+-..+...|+++.|...++...+.. +.+. ..|..+-..+...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~--------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNH--------------VLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH--------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcH--------------HHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 34566777788889999999999999987753 1233 45666777888899999999999998875
Q ss_pred CCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 84 GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 84 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
.. .+...+..+-..+.+.|+.++|.+.++...
T Consensus 68 ~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 68 KP-DWGKGYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Cc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 32 246678888889999999999999999884
No 81
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.68 E-value=0.00064 Score=41.48 Aligned_cols=90 Identities=13% Similarity=-0.004 Sum_probs=73.5
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..|..+-..+...|++++|.+.|++..... ..+...+..+...+.+.|++++|...++..... ...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~ 81 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI----------DPAYSK 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc----------CccCHH
Confidence 456677788889999999999999987653 235677888888899999999999999988543 234578
Q ss_pred hHHHHHHHHhhcCCHhHHhhh
Q 041561 135 VWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~ 155 (156)
.|..+-..|...|++++|.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~A~~~ 102 (131)
T 2vyi_A 82 AYGRMGLALSSLNKHVEAVAY 102 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHH
Confidence 888899999999999999763
No 82
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.67 E-value=0.00031 Score=46.11 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=66.3
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHH
Q 041561 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVA 94 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 94 (156)
+...|+.++|...++...+.. +.+. ..|..+-..|...|++++|.+.|++..+... .+...+..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~--------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 83 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNS--------------EQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAA 83 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHH
Confidence 456678888888888876643 2244 4455556666677777777777777665321 13444555
Q ss_pred HHHh-hcCCCch--HHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 95 ILTP-CSHSGLV--YAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 95 ll~~-~~~~~~~--~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
+-.. +.+.|+. ++|...++..... ...+...|..+-..|...|++++|.+
T Consensus 84 la~~l~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~ 136 (177)
T 2e2e_A 84 LATVLYYQASQHMTAQTRAMIDKALAL----------DSNEITALMLLASDAFMQANYAQAIE 136 (177)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHcccHHHHHH
Confidence 5555 4566666 7777777766332 12245566666677777777777654
No 83
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.67 E-value=0.00081 Score=48.14 Aligned_cols=137 Identities=7% Similarity=-0.104 Sum_probs=91.9
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHcC
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAEN 67 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~ 67 (156)
+..+-..+.+.|+.++|...++...+.. +-+...+..+-..|.+.| .........+...
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhh
Confidence 3444556678899999999999987643 224555666666666665 1111122224455
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcC
Q 041561 68 EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHS 147 (156)
Q Consensus 68 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g 147 (156)
++.++|.+.|++..... ..+...+..+-..+.+.|+.++|.+.+....... +-..+...+..+...|...|
T Consensus 199 ~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--------p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 199 AADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--------LTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTGGGGHHHHHHHHHHHHHC
T ss_pred cccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--------cccccchHHHHHHHHHHHcC
Confidence 55666677676665543 2345677788888899999999999999985441 01123678999999999999
Q ss_pred CHhHHhh
Q 041561 148 NVRLAKK 154 (156)
Q Consensus 148 ~~~~a~~ 154 (156)
+.++|..
T Consensus 270 ~~~~a~~ 276 (287)
T 3qou_A 270 TGDALAS 276 (287)
T ss_dssp TTCHHHH
T ss_pred CCCcHHH
Confidence 9888764
No 84
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=0.00067 Score=42.61 Aligned_cols=89 Identities=6% Similarity=-0.152 Sum_probs=70.8
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc----HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD----GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYK 130 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~ 130 (156)
..|..+-..+...|++++|.+.|++..+. .|+ ...+..+-..+.+.|++++|...++..... ..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~~ 96 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----------DG 96 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------TS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----------Cc
Confidence 45667778888999999999999998764 455 567777888888999999999999887443 13
Q ss_pred CChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 131 DDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 131 pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.+...|..+-..|...|++++|.+.
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~~A~~~ 121 (148)
T 2dba_A 97 GDVKALYRRSQALEKLGRLDQAVLD 121 (148)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3677888888899999999998753
No 85
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.63 E-value=0.00068 Score=43.73 Aligned_cols=89 Identities=7% Similarity=-0.044 Sum_probs=64.5
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..+..+-..+.+.|++++|.+.|+...... ..+...|..+-.++.+.|++++|...|+..... -+.+..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----------~p~~~~ 90 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM----------DIXEPR 90 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTCTH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----------CCCCch
Confidence 345556667778888888888888877643 225566677777778888888888888887432 123567
Q ss_pred hHHHHHHHHhhcCCHhHHhh
Q 041561 135 VWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~ 154 (156)
.|..+-.+|...|++++|.+
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 77777888888888888875
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.63 E-value=0.0025 Score=45.55 Aligned_cols=138 Identities=9% Similarity=-0.060 Sum_probs=93.3
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHh----CCCC-chHHHhHHHHHhhhc-c-------------------------
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKD----GYGN-DIFVGSAPINIYCNC-G------------------------- 54 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~-~------------------------- 54 (156)
.+|+.+-..+.+.|+.++|...++...+. |-.+ -..+++.+-..|.+. |
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 45667777778888888888888876542 2111 134666777777764 5
Q ss_pred -chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccH------HHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCC
Q 041561 55 -VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDG------VTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLM 127 (156)
Q Consensus 55 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~ 127 (156)
.+|+.+-..|.+.|++++|.+.|++..+....... .+|..+...+...|+.++|...|+....
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---------- 227 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---------- 227 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC----------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------
Confidence 34777888999999999999999999875433222 1566777778899999999999998843
Q ss_pred CCCCC------hhhHHHHHHHHh--hcCCHhHHhh
Q 041561 128 PYKDD------LVVWGDLVSSCQ--VHSNVRLAKK 154 (156)
Q Consensus 128 ~~~pd------~~~~~~li~~~~--~~g~~~~a~~ 154 (156)
+.|+ ...+..++.+|. ..+++++|.+
T Consensus 228 -l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~ 261 (292)
T 1qqe_A 228 -EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCK 261 (292)
T ss_dssp -C---------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred -hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2232 123455666664 3455666653
No 87
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=0.002 Score=40.37 Aligned_cols=101 Identities=9% Similarity=-0.139 Sum_probs=78.3
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
+...+..+-..+.+.|+++.|...|+...+. .|+.... ...|..+-..|...|++++|.+.|++..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~----------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQ----------AVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHH----------HHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 3456677778888999999999999998874 3442100 056677788889999999999999998764
Q ss_pred CCCccHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 84 GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 84 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
. ..+...+..+-..+.+.|+.++|...|+....
T Consensus 95 ~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 95 D-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp T-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 22466777888888999999999999998843
No 88
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.61 E-value=0.0012 Score=57.08 Aligned_cols=140 Identities=11% Similarity=0.074 Sum_probs=90.6
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------chHHHHHHHHHcCCC
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------VTWNEMIHGYAENEY 69 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------~~~~~li~~~~~~g~ 69 (156)
|...|.-+...|.+.|++++|.+.+...++.. +++...+-+..+|++.+ ..|..+=..|...|+
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~ 1210 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKM 1210 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 45567778888999999999999998776654 44444445778888776 345556666667777
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC----------------cCCCCCCCh
Q 041561 70 VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK----------------CLMPYKDDL 133 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------c~~~~~pd~ 133 (156)
+++|..+|... ..|..+...+.+.|++++|.+.++.-... ..+.. |...+.-+.
T Consensus 1211 YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~-~aWkev~~acve~~Ef~LA~~cgl~Iiv~~ 1280 (1630)
T 1xi4_A 1211 YDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANST-RTWKEVCFACVDGKEFRLAQMCGLHIVVHA 1280 (1630)
T ss_pred HHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH-HHHHHHHHHHhhhhHHHHHHHHHHhhhcCH
Confidence 77777777663 36777777777777777777776644111 00000 122233355
Q ss_pred hhHHHHHHHHhhcCCHhHHhhh
Q 041561 134 VVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 134 ~~~~~li~~~~~~g~~~~a~~~ 155 (156)
..+..++.-|-+.|.+++|.++
T Consensus 1281 deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHH
Confidence 5666777778888888777653
No 89
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.58 E-value=0.001 Score=41.40 Aligned_cols=90 Identities=8% Similarity=-0.169 Sum_probs=73.5
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..|..+-..+...|++++|.+.|++..... ..+...+..+-..+.+.|++++|...++..... .+.+..
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------~p~~~~ 78 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL----------DGQSVK 78 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------CchhHH
Confidence 456677788899999999999999987753 224667888888889999999999999988443 133678
Q ss_pred hHHHHHHHHhhcCCHhHHhhh
Q 041561 135 VWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~ 155 (156)
.|..+-..|...|++++|.+.
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~ 99 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIAN 99 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 899999999999999999753
No 90
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.58 E-value=0.00092 Score=42.47 Aligned_cols=87 Identities=7% Similarity=-0.054 Sum_probs=61.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhH
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVW 136 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~ 136 (156)
+..+-..+.+.|++++|.+.|+....... .+...|..+-..+.+.|++++|...|+..... -+.+...|
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~ 89 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALM----------DINEPRFP 89 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCTHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----------CCCCcHHH
Confidence 34455667788888888888888776432 24556666777777888888888888877433 12355667
Q ss_pred HHHHHHHhhcCCHhHHhh
Q 041561 137 GDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 137 ~~li~~~~~~g~~~~a~~ 154 (156)
..+-.+|...|++++|.+
T Consensus 90 ~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAES 107 (142)
T ss_dssp HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 777788888888888865
No 91
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.57 E-value=0.00064 Score=51.07 Aligned_cols=135 Identities=7% Similarity=-0.056 Sum_probs=81.6
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc---------------------chHHHHHHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------------VTWNEMIHGY 64 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---------------------~~~~~li~~~ 64 (156)
..|..+-..+.+.|+.++|...++...+.. +-+...|+.+-..|.+.| ..|+.+-.++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356666777788899999999999988753 124545554444444333 4556666666
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHh
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQ 144 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~ 144 (156)
...|++++|...|++..+... -+...|..+-.++.+.|++++|...++..... -.-+...|+.+-..+.
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l----------~P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE----------DVRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH----------CTTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHH
Confidence 666666666666666655321 13445555556666666666666666666332 1224566666666666
Q ss_pred h-cCCHhHH
Q 041561 145 V-HSNVRLA 152 (156)
Q Consensus 145 ~-~g~~~~a 152 (156)
. .|..++|
T Consensus 246 ~l~~~~~eA 254 (382)
T 2h6f_A 246 NTTGYNDRA 254 (382)
T ss_dssp HTTCSCSHH
T ss_pred HhcCcchHH
Confidence 6 4444555
No 92
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.56 E-value=0.00098 Score=43.26 Aligned_cols=88 Identities=14% Similarity=0.031 Sum_probs=53.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhh
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVV 135 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~ 135 (156)
.|..+-..+.+.|++++|.+.|++..+... -+...|..+-..+.+.|++++|...|+..... -..+...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~ 81 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVV----------DPKYSKA 81 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------CCCCHHH
Confidence 344555566667777777777776655321 14455666666666777777777777666332 1224566
Q ss_pred HHHHHHHHhhcCCHhHHhh
Q 041561 136 WGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~ 154 (156)
|..+-.+|...|++++|.+
T Consensus 82 ~~~lg~~~~~~g~~~~A~~ 100 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKE 100 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHH
Confidence 6666677777777776654
No 93
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.0012 Score=40.75 Aligned_cols=88 Identities=8% Similarity=-0.040 Sum_probs=66.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhh
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVV 135 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~ 135 (156)
.|..+-..+.+.|++++|.+.|++..+.. ..+...|..+-.++.+.|++++|...++..... -..+...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~ 74 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK----------DPNFVRA 74 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------CCCcHHH
Confidence 34555667788899999999998887643 224667778888888899999999998887433 1235677
Q ss_pred HHHHHHHHhhcCCHhHHhh
Q 041561 136 WGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~ 154 (156)
|..+-.++...|++++|.+
T Consensus 75 ~~~lg~~~~~~~~~~~A~~ 93 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALE 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHH
Confidence 8888888899999988875
No 94
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.56 E-value=0.00055 Score=44.62 Aligned_cols=96 Identities=11% Similarity=-0.079 Sum_probs=76.8
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
..+..+=..+.+.|++++|...|+...+.. |+.. ..|..+-.+|...|++++|.+.|++..+-..
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~-------------~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNV-------------DYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH-------------HHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 345555667788999999999999998753 4322 6778888899999999999999999987432
Q ss_pred CccHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 86 KHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
. +...|..+-.++.+.|+.++|...|+....
T Consensus 102 ~-~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 102 N-DYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp S-CCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 355777888889999999999999998843
No 95
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.55 E-value=0.00046 Score=42.24 Aligned_cols=92 Identities=9% Similarity=-0.016 Sum_probs=72.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCC---
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD--- 132 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd--- 132 (156)
.|..+-..+...|++++|.+.|++..+.. ..+...+..+-..+.+.|++++|...++....... ...++
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~ 77 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-------ENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-------HSTTCHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-------ccchhHHH
Confidence 46677788899999999999999988754 33566788888888999999999999998844311 01122
Q ss_pred -hhhHHHHHHHHhhcCCHhHHhhh
Q 041561 133 -LVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 133 -~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
..+|..+-..|...|++++|.+.
T Consensus 78 ~~~~~~~la~~~~~~~~~~~A~~~ 101 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEKYKDAIHF 101 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHH
Confidence 77888899999999999999763
No 96
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.53 E-value=0.0013 Score=41.17 Aligned_cols=88 Identities=5% Similarity=-0.049 Sum_probs=66.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhh
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVV 135 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~ 135 (156)
.|...=..|.+.|++++|.+.|++..+.. ..+...|..+-.++.+.|++++|...++...+. -..+...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------~p~~~~a 83 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL----------DSKFIKG 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----------hhhhhHH
Confidence 34444556778899999999998877643 235667777888888899999999988887432 1345778
Q ss_pred HHHHHHHHhhcCCHhHHhh
Q 041561 136 WGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~ 154 (156)
|..+=.+|...|++++|.+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~ 102 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQR 102 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHH
Confidence 8888888999999998875
No 97
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.52 E-value=0.0013 Score=42.74 Aligned_cols=97 Identities=5% Similarity=-0.089 Sum_probs=78.7
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCC-chHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
...|..+-..+.+.|++++|...|+...+.. | +. ..|..+-.+|.+.|++++|.+.|++..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~--------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANP--------------IYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCH--------------HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3456667778889999999999999987753 3 33 56777888899999999999999998875
Q ss_pred CCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 84 GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 84 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
.. -+...|..+-..+.+.|++++|...|+.....
T Consensus 75 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 75 DP-KYSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 42 24667888888999999999999999988443
No 98
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.51 E-value=0.0016 Score=43.21 Aligned_cols=132 Identities=8% Similarity=-0.093 Sum_probs=86.5
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHh----CCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKD----GYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDII 81 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 81 (156)
.++..+-..+...|++++|...+++..+. |..|... ..++.+-..|...|++++|.+.|++..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------------~~~~~l~~~~~~~g~~~~A~~~~~~al 93 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEH-------------RALHQVGMVERMAGNWDAARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555556666777777777777776542 1111110 566778888899999999999998875
Q ss_pred HC----CCCc--cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCC-CCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 82 AS----GVKH--DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPY-KDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 82 ~~----g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~-~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
+. +-.| ....+..+-..+...|++++|...+++...... ..+. ..-..++..+-..+...|++++|.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 168 (203)
T 3gw4_A 94 ELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ-----QADDQVAIACAFRGLGDLAQQEKNLLEAQQ 168 (203)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-----hccchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 42 3222 234567777888889999999999887643211 0000 1112346777788999999999875
Q ss_pred h
Q 041561 155 A 155 (156)
Q Consensus 155 ~ 155 (156)
.
T Consensus 169 ~ 169 (203)
T 3gw4_A 169 H 169 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.50 E-value=0.0025 Score=44.45 Aligned_cols=127 Identities=9% Similarity=-0.118 Sum_probs=89.3
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
..+-..-..+.+.|++++|...|+.+.+.. |+.... ...+..+-.+|.+.|++++|.+.|+...+...
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~----------~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p 83 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWA----------ADAQFYLARAYYQNKEYLLAASEYERFIQIYQ 83 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTH----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcch----------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC
Confidence 344455566778999999999999997753 322000 04556677788899999999999999987532
Q ss_pred -Ccc-HHHHHHHHHhhcC--------CCchHHHHHHHHhcccccccCCCcCCCCCC-ChhhH-----------------H
Q 041561 86 -KHD-GVTFVAILTPCSH--------SGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVVW-----------------G 137 (156)
Q Consensus 86 -~p~-~~t~~~ll~~~~~--------~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~~-----------------~ 137 (156)
.|+ ...+..+-.++.+ .|+.++|...|+..... .| +...+ -
T Consensus 84 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-----------~p~~~~~~~a~~~~~~~~~~~~~~~~ 152 (261)
T 3qky_A 84 IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR-----------YPNHELVDDATQKIRELRAKLARKQY 152 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH-----------CTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH-----------CcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 222 3455556666666 99999999999998554 23 23333 3
Q ss_pred HHHHHHhhcCCHhHHhhh
Q 041561 138 DLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 138 ~li~~~~~~g~~~~a~~~ 155 (156)
.+-..|...|++++|.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 153 EAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHH
Confidence 446778899999998753
No 100
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.50 E-value=0.00059 Score=52.62 Aligned_cols=115 Identities=9% Similarity=-0.048 Sum_probs=86.2
Q ss_pred HhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHH
Q 041561 14 SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFV 93 (156)
Q Consensus 14 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 93 (156)
.+.+.|+.++|.+.+++..+. .|+.. ..|..+-.+|.+.|++++|.+.|++..+... -+..++.
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~-------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~ 78 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNA-------------IYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYY 78 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccH-------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 456789999999999998775 34321 6778888899999999999999999987532 2466788
Q ss_pred HHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-ChhhHHHHHHH--HhhcCCHhHHhhh
Q 041561 94 AILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSS--CQVHSNVRLAKKA 155 (156)
Q Consensus 94 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~--~~~~g~~~~a~~~ 155 (156)
.+-.++.+.|++++|.+.+++..+. .| +...+..+-.+ +.+.|++++|.+.
T Consensus 79 ~lg~~~~~~g~~~eA~~~~~~al~~-----------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~ 132 (477)
T 1wao_1 79 RRAASNMALGKFRAALRDYETVVKV-----------KPHDKDAKMKYQECNKIVKQKAFERAIAG 132 (477)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-----------STTCTTHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888999999999999999988443 22 33444444444 8888888888754
No 101
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.49 E-value=0.00019 Score=44.14 Aligned_cols=107 Identities=8% Similarity=0.007 Sum_probs=75.3
Q ss_pred CCCchHHHHHHHHHHHHhCC-CCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHH
Q 041561 17 KLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAI 95 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 95 (156)
..|+.++|...|+...+.+. .|+.. ..|..+-..|...|++++|.+.|++..+.... +...+..+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~-------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 67 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLA-------------ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFY 67 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 46788999999999887542 13221 56777888899999999999999999875432 35677778
Q ss_pred HHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhh
Q 041561 96 LTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV 145 (156)
Q Consensus 96 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~ 145 (156)
-.++.+.|+.++|...++....... -.|+...|...|..|..
T Consensus 68 ~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 68 AMVLYNLGRYEQGVELLLKIIAETS--------DDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHC--------CCHHHHHTHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHHH
Confidence 8888999999999999998854421 24455556666666554
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.49 E-value=0.00054 Score=44.22 Aligned_cols=109 Identities=6% Similarity=-0.170 Sum_probs=66.8
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 041561 17 KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 96 (156)
..|+++.|...+...... .|+.. ..+-.+-..|.+.|++++|.+.|++..+... -+..+|..+-
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~-------------~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg 72 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKS-------------IKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLG 72 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHH-------------TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 445666666666554331 23221 3444556667777777777777777765321 1445666666
Q ss_pred HhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-ChhhHHHHHHHHhhcCCHhHH
Q 041561 97 TPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSSCQVHSNVRLA 152 (156)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~~~~~g~~~~a 152 (156)
..+.+.|++++|...|+...+. .| +...|..+-..|...|+.++|
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVEL-----------NPTQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHcCchHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCChHHH
Confidence 7777777777777777776332 33 456677777777777776544
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.46 E-value=0.0016 Score=41.92 Aligned_cols=115 Identities=6% Similarity=-0.037 Sum_probs=85.5
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
..+-.+=..|.+.|+.++|...|+...+. .|+.. ..|..+-..|.+.|++++|.+.|++..+.
T Consensus 32 ~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~-------------~a~~~lg~~~~~~~~~~~A~~~~~~al~~-- 94 (150)
T 4ga2_A 32 IKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDP-------------KAHRFLGLLYELEENTDKAVECYRRSVEL-- 94 (150)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH-------------HHHHHHHHHHHHcCchHHHHHHHHHHHHh--
Confidence 34555667788999999999999998775 34332 67788888899999999999999998874
Q ss_pred Cc-cHHHHHHHHHhhcCCCchHHHHHH-HHhcccccccCCCcCCCCCC-ChhhHHHHHHHHhhcCC
Q 041561 86 KH-DGVTFVAILTPCSHSGLVYAEVEI-FNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSSCQVHSN 148 (156)
Q Consensus 86 ~p-~~~t~~~ll~~~~~~~~~~~a~~~-~~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~~~~~g~ 148 (156)
.| +...+..+-..+.+.|+.+++... ++...+ +.| +..+|+..-..+...|+
T Consensus 95 ~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~-----------l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 95 NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK-----------LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH-----------HSTTCHHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----------hCcCCHHHHHHHHHHHHHhCc
Confidence 34 456788888888999998876655 465522 234 56677776666666664
No 104
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.45 E-value=0.0016 Score=41.59 Aligned_cols=90 Identities=11% Similarity=0.007 Sum_probs=73.7
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..|..+-..+...|++++|.+.|++..+.. ..+..++..+-..+.+.|++++|...++..... ...+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----------~~~~~~ 82 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL----------DKKYIK 82 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CcccHH
Confidence 456777788899999999999999987743 225667888888889999999999999988443 234678
Q ss_pred hHHHHHHHHhhcCCHhHHhhh
Q 041561 135 VWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~ 155 (156)
.|..+-..+...|++++|.+.
T Consensus 83 ~~~~~a~~~~~~~~~~~A~~~ 103 (166)
T 1a17_A 83 GYYRRAASNMALGKFRAALRD 103 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHH
Confidence 898999999999999999763
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.44 E-value=0.0024 Score=39.95 Aligned_cols=93 Identities=5% Similarity=-0.082 Sum_probs=73.7
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc
Q 041561 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD 88 (156)
Q Consensus 9 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 88 (156)
.-.=..+.+.|++++|...|++..+.. +.+. ..|..+-.+|.+.|++++|.+.|++..+-. ..+
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~--------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~ 80 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRD-PENA--------------ILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKF 80 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH--------------HHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhh
Confidence 333345778899999999999987753 1234 567778888999999999999999988743 224
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 89 GVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
...|..+-.++.+.|++++|.+.|+...+
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788888899999999999999998843
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.43 E-value=0.0047 Score=42.24 Aligned_cols=76 Identities=14% Similarity=0.060 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCccHH-HH-----------------HHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCC
Q 041561 67 NEYVEQAISLYKDIIASGVKHDGV-TF-----------------VAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMP 128 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~~p~~~-t~-----------------~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~ 128 (156)
.|+.++|.+.|++..+.- |+.. .+ ..+-..+.+.|++++|...|+.+.+.
T Consensus 109 ~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------- 176 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD---------- 176 (225)
T ss_dssp CHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------
T ss_pred cHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH----------
Confidence 567889999999988642 3221 11 12344567889999999999998554
Q ss_pred CCCC----hhhHHHHHHHHhhcCCHhHHhhh
Q 041561 129 YKDD----LVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 129 ~~pd----~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
-|+ ...+..+-.+|.+.|+.++|.+.
T Consensus 177 -~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~ 206 (225)
T 2yhc_A 177 -YPDTQATRDALPLMENAYRQMQMNAQAEKV 206 (225)
T ss_dssp -STTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -CcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence 233 25688899999999999999763
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.42 E-value=0.00098 Score=48.05 Aligned_cols=142 Identities=6% Similarity=-0.120 Sum_probs=89.7
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhC----CCC-chHHHhHHHHHhhhcc--------------------------c
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDG----YGN-DIFVGSAPINIYCNCG--------------------------V 55 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g----~~~-~~~~~~~li~~~~~~~--------------------------~ 55 (156)
.|......+...|++++|...|....+.. -.+ -...|+.+-..|.+.| .
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34555566667778888877777664421 111 1235555555555544 4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCC
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIAS----GVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYK 130 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~ 130 (156)
+++.+-..|.. |++++|.+.|++-.+- |-.+ ...++..+-..+.+.|++++|...|++...... ..+..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~ 191 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK-----EMENY 191 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----HcCCh
Confidence 56667777777 9999999998886541 2111 135677788888899999999999988743211 00011
Q ss_pred CC-hhhHHHHHHHHhhcCCHhHHhh
Q 041561 131 DD-LVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 131 pd-~~~~~~li~~~~~~g~~~~a~~ 154 (156)
++ ..+|..+...+...|++++|.+
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 11 2366777777888899988875
No 108
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.40 E-value=0.0016 Score=44.45 Aligned_cols=89 Identities=8% Similarity=-0.061 Sum_probs=73.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-Chh
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLV 134 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~ 134 (156)
.|...-..+...|++++|.+.|++..+....++...+..+-..+.+.|++++|...++..... .| +..
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~ 77 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-----------NYNLAN 77 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----------TCSHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-----------CcchHH
Confidence 445556678899999999999999988665467777777888888999999999999988433 34 567
Q ss_pred hHHHHHHHHhhcCCHhHHhhh
Q 041561 135 VWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a~~~ 155 (156)
.|..+-..|...|++++|.+.
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~~ 98 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIAT 98 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHH
Confidence 888899999999999999763
No 109
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.40 E-value=0.0031 Score=44.97 Aligned_cols=131 Identities=11% Similarity=-0.024 Sum_probs=90.6
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHhC-CCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-Ccc
Q 041561 11 VLSSCAKLSSLFLGRQILTRIVKDG-YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV-KHD 88 (156)
Q Consensus 11 ll~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~ 88 (156)
.+..+.+.|+.++|..+++...+.. ..|+. ..++ ..+..+...+...+++++|.+.|++...-.. .++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~---~~~~-------~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~ 150 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEF---QQFL-------QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHH---HHHH-------HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHH---HHHH-------HHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc
Confidence 3667788899999999999987632 22222 1111 2344466667778899999999999887322 233
Q ss_pred ----HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCC-hhhHHHHHHHHhhcCCHhHHhhh
Q 041561 89 ----GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD-LVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 89 ----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd-~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
..+++.+-..+.+.|++++|...|+.......-.+ ...|. ..+|..+-..|...|++++|.+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~nlg~~y~~~~~y~~A~~~ 218 (293)
T 3u3w_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH----DNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS----CCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 23688888999999999999999998853211000 01222 34788899999999999999763
No 110
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.39 E-value=0.0024 Score=39.22 Aligned_cols=84 Identities=8% Similarity=-0.111 Sum_probs=52.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcc--HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCC----h
Q 041561 60 MIHGYAENEYVEQAISLYKDIIASGVKHD--GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD----L 133 (156)
Q Consensus 60 li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd----~ 133 (156)
+-..+...|++++|.+.|+...+...... ...+..+-..+.+.|++++|...|+..... .|+ .
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-----------~p~~~~~~ 76 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-----------YPTHDKAA 76 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTSTTHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----------CCCCcccH
Confidence 34556677778888888777766422111 135555666667778888888777777433 222 4
Q ss_pred hhHHHHHHHHhhcCCHhHHhh
Q 041561 134 VVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 134 ~~~~~li~~~~~~g~~~~a~~ 154 (156)
..+..+-.++...|++++|.+
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~ 97 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQ 97 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHH
Confidence 456666677777777777764
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.38 E-value=0.0036 Score=41.97 Aligned_cols=100 Identities=13% Similarity=-0.014 Sum_probs=80.3
Q ss_pred CCCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041561 2 YPTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDII 81 (156)
Q Consensus 2 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 81 (156)
.|+...|..+-..+.+.|+.++|...++...+.. +.+. ..|..+-..|...|++++|.+.|++..
T Consensus 34 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~--------------~~~~~lg~~~~~~~~~~~A~~~~~~al 98 (213)
T 1hh8_A 34 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLA--------------VAYFQRGMLYYQTEKYDLAIKDLKEAL 98 (213)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch--------------HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4667788888889999999999999999987753 1233 567778888999999999999999988
Q ss_pred HCC--------------CCcc-HHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 82 ASG--------------VKHD-GVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 82 ~~g--------------~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
+.. ..|+ ...+..+-..+.+.|+.++|...|+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 99 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 742 1222 2567778888899999999999999884
No 112
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.37 E-value=0.0004 Score=51.46 Aligned_cols=141 Identities=11% Similarity=-0.016 Sum_probs=93.9
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHh----CC-CCchHHHhHHHHHhhhcc--------------------------c
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKD----GY-GNDIFVGSAPINIYCNCG--------------------------V 55 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~~--------------------------~ 55 (156)
.|..+-..+...|+.++|...+++..+. +- ......+..+-..|...| .
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 5666777777888888888888877543 11 223455666666666665 3
Q ss_pred hHHHHHHHHHcCCC-----------------HHHHHHHHHHHHH----CCCCc-cHHHHHHHHHhhcCCCchHHHHHHHH
Q 041561 56 TWNEMIHGYAENEY-----------------VEQAISLYKDIIA----SGVKH-DGVTFVAILTPCSHSGLVYAEVEIFN 113 (156)
Q Consensus 56 ~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~----~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~ 113 (156)
.+..+-..|...|+ +++|.+.|++..+ .+-.| ...++..+-..+.+.|++++|...++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 66777777888888 8888888877543 12222 22366677777888889988888888
Q ss_pred hcccccccCCCcCCCCCCC----hhhHHHHHHHHhhcCCHhHHhhh
Q 041561 114 SMEHDHEVKPKCLMPYKDD----LVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 114 ~m~~~~~~~~~c~~~~~pd----~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
+...... -.++ ..+|..+-..|...|++++|.+.
T Consensus 248 ~al~~~~--------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 248 ERLRIAR--------EFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHH--------HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHH--------hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 7743211 0011 23777888888888998888753
No 113
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.37 E-value=0.0081 Score=36.73 Aligned_cols=98 Identities=9% Similarity=0.016 Sum_probs=71.6
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc
Q 041561 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD 88 (156)
Q Consensus 9 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 88 (156)
..+-..+.+.|++++|...|+...+.. |+..... ..+..+-.++.+.|++++|.+.|++..+......
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~----------~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTP----------NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD 73 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHH----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccH----------HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence 344556678899999999999987753 3221000 2445566778899999999999999887532211
Q ss_pred --HHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 89 --GVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 89 --~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
...+..+-..+.+.|+.++|...|+.....
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455667778888999999999999998544
No 114
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.37 E-value=0.0006 Score=48.37 Aligned_cols=96 Identities=8% Similarity=-0.069 Sum_probs=69.3
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCcc-HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIAS----GVKHD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPY 129 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~ 129 (156)
..+..+...+...|++++|.+.|++.... +..+. ..++..+-..+.+.|++++|...++.......- .+.
T Consensus 224 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~ 298 (338)
T 3ro2_A 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-----LKD 298 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-----cCC
Confidence 37788888999999999999999887642 21111 456777888888999999999998877432110 000
Q ss_pred -CCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 130 -KDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 130 -~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.....+|..+-..|...|++++|.+.
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 11245788888999999999999764
No 115
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.36 E-value=0.00096 Score=48.93 Aligned_cols=96 Identities=8% Similarity=-0.067 Sum_probs=70.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCcc-HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIAS----GVKHD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPY 129 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~ 129 (156)
..|..+-..|...|++++|.+.|++..+. +..+. ..++..+-..+.+.|++++|...++.......- .+.
T Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~ 302 (406)
T 3sf4_A 228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-----LND 302 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-----cCC
Confidence 37888889999999999999999887642 22222 457778888888999999999999877432110 000
Q ss_pred CC-ChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 130 KD-DLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 130 ~p-d~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.+ ...+|..+-..|...|++++|.+.
T Consensus 303 ~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 303 RIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11 156788888999999999999763
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.34 E-value=0.00089 Score=44.09 Aligned_cols=109 Identities=15% Similarity=0.042 Sum_probs=75.2
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHH-hhhc-c-------------------chHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINI-YCNC-G-------------------VTWNEMIHG 63 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~-~-------------------~~~~~li~~ 63 (156)
...+..+-..+.+.|+.++|...++...+.. |+...+..+-.. +.+. + ..+..+-..
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~ 117 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQ 117 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3556677777888899999999888875432 233322221111 1110 0 567778888
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 64 YAENEYVEQAISLYKDIIASGVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
+...|++++|.+.|++..+....+ +...+..+...+...|+.++|...|+..
T Consensus 118 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 118 YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 889999999999999988765443 3567888888888899999988888754
No 117
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.34 E-value=0.0033 Score=42.03 Aligned_cols=133 Identities=8% Similarity=-0.089 Sum_probs=89.8
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCC-CCchHHHhHHHHHhhhc--cchHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNC--GVTWNEMIHGYAENEYVEQAISLYKDIIASG 84 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 84 (156)
+..+-..+.+.|++++|...|....+..- .|+... ..+....+. ...|..+-.+|.+.|++++|.+.|+...+..
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD--QILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccch--hhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 44445566788999999999999876421 121000 000000000 0566778888899999999999999988753
Q ss_pred CCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHh
Q 041561 85 VKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAK 153 (156)
Q Consensus 85 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~ 153 (156)
..+...+..+-.++.+.|++++|...|+..... ..-+...+..+-..+...++.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASL----------NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 235667888888899999999999999988433 1235677777777777777666654
No 118
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.34 E-value=0.0012 Score=51.63 Aligned_cols=112 Identities=8% Similarity=-0.112 Sum_probs=74.7
Q ss_pred CCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 041561 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 97 (156)
.|+.++|.+.+++..+. .|+.. ..|..+-..|.+.|++++|.+.|++..+.. .-+...+..+-.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~-------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDF-------------VAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGR 65 (568)
T ss_dssp ---------------------CCH-------------HHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46788899988887653 24321 566777788889999999999999988743 224667888888
Q ss_pred hhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 98 PCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 98 ~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.+.+.|++++|.+.+++..+. -..+...|..+-..|...|++++|.+.
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~ 113 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDA----------APEHPGIALWLGHALEDAGQAEAAAAA 113 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhc----------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999988543 134678899999999999999999763
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.34 E-value=0.0022 Score=41.23 Aligned_cols=96 Identities=5% Similarity=-0.148 Sum_probs=74.9
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
..+..+-..+.+.|++++|...|+...+... .+. ..|..+-.+|...|++++|.+.|++......
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~--------------~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDS--------------RFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccH--------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 3455566677889999999999999876531 244 5667777888999999999999999887432
Q ss_pred CccHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 86 KHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
-+...+..+-.++...|+.++|...|+....
T Consensus 87 -~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 87 -XEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp -TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2445677778888899999999999998843
No 120
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.33 E-value=0.00084 Score=49.66 Aligned_cols=95 Identities=12% Similarity=-0.025 Sum_probs=69.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCC-ccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCC-
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIAS----GVK-HDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPY- 129 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~- 129 (156)
.|..+-..|...|++++|.+.|++.... +.. ....++..+-..+.+.|++++|...++.......- .+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~ 339 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE-----LGDR 339 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HTCH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----CCCh
Confidence 7888899999999999999999887642 111 12457777888888999999999999887432110 000
Q ss_pred CCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 130 KDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 130 ~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.....+|..+-..|...|++++|.+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 11245788888999999999999763
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.32 E-value=0.0071 Score=43.03 Aligned_cols=139 Identities=9% Similarity=-0.115 Sum_probs=90.3
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhCCC-Cch----HHHhHHHHHhhhcc--------------------------chH
Q 041561 9 TTVLSSCAKLSSLFLGRQILTRIVKDGYG-NDI----FVGSAPINIYCNCG--------------------------VTW 57 (156)
Q Consensus 9 ~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~----~~~~~li~~~~~~~--------------------------~~~ 57 (156)
...+..+...|+.++|...+....+..-. ++. ..+..+-..|...| ..|
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 34455666778888888877766553221 111 11222222333332 367
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH----CCCCc--cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC
Q 041561 58 NEMIHGYAENEYVEQAISLYKDIIA----SGVKH--DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD 131 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p 131 (156)
+.+-..|...|++++|.+.|++..+ .+-.+ ...++..+-..|.+.|++++|...++....-.. ..+..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~-----~~~~~~ 233 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC-----RINSMA 233 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTBCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH-----hcCcHH
Confidence 8888999999999999999998762 22222 225788888899999999999999987632210 000111
Q ss_pred -ChhhHHHHHHHHhhcCCHhHH
Q 041561 132 -DLVVWGDLVSSCQVHSNVRLA 152 (156)
Q Consensus 132 -d~~~~~~li~~~~~~g~~~~a 152 (156)
-..+|..+=..|...|+.++|
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHH
Confidence 156788888899999999998
No 122
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.30 E-value=0.0028 Score=40.17 Aligned_cols=95 Identities=9% Similarity=-0.099 Sum_probs=73.7
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
.+..+-..+.+.|++++|...|+...+... .+. ..|..+-.+|.+.|++++|.+.|+.......
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~--------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p- 83 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDA--------------RYFLGLGACRQSLGLYEQALQSYSYGALMDI- 83 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccH--------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-
Confidence 344455667788999999999999877531 233 5567777888999999999999999887542
Q ss_pred ccHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 87 HDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
-+...+..+-.++...|++++|...|+....
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2445667777888899999999999998843
No 123
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.29 E-value=0.0031 Score=42.74 Aligned_cols=100 Identities=10% Similarity=0.035 Sum_probs=65.3
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchH-HHhHHHHHhhhcc----chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIF-VGSAPINIYCNCG----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKH 87 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 87 (156)
..+.+.|++++|...|+...+.. |+.. .|.. ....+.. ..++.+-..|.+.|++++|.+.|++..+... -
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~ 86 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYW--TNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-N 86 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHH--HHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHH--hhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-C
Confidence 34568899999999999987743 4321 1111 0000000 2223366777888888888888888776431 2
Q ss_pred cHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 88 DGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
+...+..+-..+...|+.++|...|+....
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455677777778888888888888887743
No 124
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.28 E-value=0.0031 Score=48.29 Aligned_cols=128 Identities=5% Similarity=-0.110 Sum_probs=93.7
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchH--------HHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIF--------VGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYK 78 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--------~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 78 (156)
.|...=..+.+.|+++.|...|+...+.. |+.. ..+.+. -..|..+-.+|.+.|++++|.+.|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~------~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFL------LAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHH------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHH------HHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 34555566778999999999999987642 2210 000000 0567888889999999999999999
Q ss_pred HHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-ChhhHHHHHHHHhhcCCHhHHhh
Q 041561 79 DIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 79 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~~~~~g~~~~a~~ 154 (156)
+..+... -+...|..+-.++.+.|++++|...|+...+. .| +...|..+-..+.+.|+.++|.+
T Consensus 342 ~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-----------~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 342 KALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-----------NPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----------C----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9887532 25677888889999999999999999988432 33 55778888888888888887764
No 125
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0052 Score=37.74 Aligned_cols=96 Identities=10% Similarity=-0.029 Sum_probs=76.2
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGV 85 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 85 (156)
..|...=..+.+.|++++|...|+...+.. +.+. ..|..+-.+|.+.|++++|.+.|++..+...
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~--------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 69 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDA--------------RGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCh--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 345555667788999999999999987753 1233 5677788889999999999999999887532
Q ss_pred CccHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 86 KHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 86 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
-+...|..+-.++.+.|+.++|...|+....
T Consensus 70 -~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 70 -NFVRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 2466788888889999999999999998743
No 126
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.27 E-value=0.0032 Score=47.28 Aligned_cols=137 Identities=11% Similarity=0.024 Sum_probs=102.4
Q ss_pred cccHHHHHHHhcCCCc-hHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSS-LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHG 63 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~ 63 (156)
...|+.+-..+.+.|+ .++|...++...+..- -+...|+.+=..|.+.| ..|..+-.+
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~ 209 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 209 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHH
Confidence 4567777778888896 9999999999987532 35677777777777666 678888999
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcC-CCchHHH-----HHHHHhcccccccCCCcCCCCCC-ChhhH
Q 041561 64 YAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH-SGLVYAE-----VEIFNSMEHDHEVKPKCLMPYKD-DLVVW 136 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a-----~~~~~~m~~~~~~~~~c~~~~~p-d~~~~ 136 (156)
+.+.|++++|++.|+++.+.... +...|+.+-..+.+ .|..++| ...++..... .| +...|
T Consensus 210 ~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-----------~P~~~~a~ 277 (382)
T 2h6f_A 210 IQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----------VPHNESAW 277 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----------STTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-----------CCCCHHHH
Confidence 99999999999999999885432 56678888888887 6665777 3666666332 33 56778
Q ss_pred HHHHHHHhhcC--CHhHHhh
Q 041561 137 GDLVSSCQVHS--NVRLAKK 154 (156)
Q Consensus 137 ~~li~~~~~~g--~~~~a~~ 154 (156)
+.+-..+...| +.++|.+
T Consensus 278 ~~l~~ll~~~g~~~~~~a~~ 297 (382)
T 2h6f_A 278 NYLKGILQDRGLSKYPNLLN 297 (382)
T ss_dssp HHHHHHHTTTCGGGCHHHHH
T ss_pred HHHHHHHHccCccchHHHHH
Confidence 88888888877 4666654
No 127
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.27 E-value=0.00025 Score=43.62 Aligned_cols=80 Identities=10% Similarity=0.045 Sum_probs=60.3
Q ss_pred cCCCHHHHHHHHHHHHHCCC-Cc-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHH
Q 041561 66 ENEYVEQAISLYKDIIASGV-KH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143 (156)
Q Consensus 66 ~~g~~~~a~~~~~~m~~~g~-~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~ 143 (156)
..|++++|.+.|++..+.+. .| +...+..+-..+.+.|++++|...|++..+. .+-+...|..+-.++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ----------FPNHQALRVFYAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCchHHHHHHHHHH
Confidence 45788999999999887541 13 3457778888899999999999999998544 133678888899999
Q ss_pred hhcCCHhHHhhh
Q 041561 144 QVHSNVRLAKKA 155 (156)
Q Consensus 144 ~~~g~~~~a~~~ 155 (156)
...|++++|.+.
T Consensus 72 ~~~g~~~~A~~~ 83 (117)
T 3k9i_A 72 YNLGRYEQGVEL 83 (117)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHH
Confidence 999999999863
No 128
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.25 E-value=0.0022 Score=39.79 Aligned_cols=87 Identities=10% Similarity=-0.022 Sum_probs=68.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-Chhh
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVV 135 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~ 135 (156)
+-.+-..+.+.|++++|.+.|++..+... -+...|..+-..+.+.|+.++|...|+..... .| +...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----------~P~~~~~ 87 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARML-----------DPKDIAV 87 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHH
Confidence 34455677889999999999999887432 25567777778888999999999999988433 33 6678
Q ss_pred HHHHHHHHhhcCCHhHHhhh
Q 041561 136 WGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~~ 155 (156)
|..+-..|...|++++|.+.
T Consensus 88 ~~~la~~~~~~g~~~~A~~~ 107 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALAS 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHH
Confidence 88888999999999998753
No 129
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.25 E-value=0.004 Score=44.01 Aligned_cols=141 Identities=13% Similarity=0.038 Sum_probs=95.6
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCC-c--hHHHhHHHHHhhhcc--------------------------chHHHH
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGN-D--IFVGSAPINIYCNCG--------------------------VTWNEM 60 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~--~~~~~~li~~~~~~~--------------------------~~~~~l 60 (156)
..-..+.+.|++++|...++...+..... . ...+..+-..|...| ..+..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 33445667888999999999887753211 1 356666666676666 467778
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHhhcCCCc--------------------hHHHHHHHHhc
Q 041561 61 IHGYAENEYVEQAISLYKDIIAS----GVKH-DGVTFVAILTPCSHSGL--------------------VYAEVEIFNSM 115 (156)
Q Consensus 61 i~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~--------------------~~~a~~~~~~m 115 (156)
-..|...|++++|.+.|++..+. +-.+ ...++..+-..+...|+ +++|...++..
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 88899999999999999987542 2111 13377778888888999 99999888775
Q ss_pred ccccccCCCcCCCCCC-ChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 116 EHDHEVKPKCLMPYKD-DLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 116 ~~~~~~~~~c~~~~~p-d~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.....- .+..| ...+|..+-..|...|++++|.+.
T Consensus 170 ~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 170 LSLVTA-----LGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHH-----HTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHh-----cCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 321100 00111 235677788888899999888753
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.24 E-value=0.0053 Score=43.71 Aligned_cols=130 Identities=12% Similarity=-0.018 Sum_probs=91.7
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCC-CchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH----C-
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDGYG-NDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA----S- 83 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~- 83 (156)
.+-..+...++.++|...++...+.... +|. + ..+ ..|+.+-..|...|++++|.+.|++..+ .
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~--~-~~~-------~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 189 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDV--Y-QNL-------YIENAIANIYAENGYLKKGIDLFEQILKQLEALH 189 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT--T-HHH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccH--H-HHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence 4556667788999999999998874332 232 1 111 4678888999999999999999999874 1
Q ss_pred CCCccHH-HHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCC-hhhHHHHHHHHhhcCC-HhHHhh
Q 041561 84 GVKHDGV-TFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD-LVVWGDLVSSCQVHSN-VRLAKK 154 (156)
Q Consensus 84 g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd-~~~~~~li~~~~~~g~-~~~a~~ 154 (156)
+..+... ++..+-..|.+.|++++|...++....-.. ..+..+. ..+|..+=..|.+.|+ .++|.+
T Consensus 190 ~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 190 DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC-----RINSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----HcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 3333333 788888999999999999999887632210 0001122 5678888888999994 588764
No 131
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.22 E-value=0.004 Score=50.05 Aligned_cols=127 Identities=7% Similarity=-0.053 Sum_probs=77.9
Q ss_pred cCCCchHHHHHHHHHHHH------hCC-CCchHHHhHHHHHhhhcc--------------------chHHHHHHHHHcCC
Q 041561 16 AKLSSLFLGRQILTRIVK------DGY-GNDIFVGSAPINIYCNCG--------------------VTWNEMIHGYAENE 68 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~------~g~-~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~~~~g 68 (156)
...|+.++|.+.++...+ ... +.+...+..+-..|.+.| ..|..+-.+|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 567777788777777761 012 234455555555555555 45666666777777
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCC
Q 041561 69 YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSN 148 (156)
Q Consensus 69 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~ 148 (156)
++++|.+.|++..+.... +...+..+-..+.+.|++++ .+.|++..+. -.-+...|..+=.++...|+
T Consensus 482 ~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~----------~P~~~~a~~~lg~~~~~~g~ 549 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST----------NDGVISAAFGLARARSAEGD 549 (681)
T ss_dssp CHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH----------CTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh----------CCchHHHHHHHHHHHHHcCC
Confidence 788888777776653211 33455556666667777777 6666665322 12245666677777777777
Q ss_pred HhHHhh
Q 041561 149 VRLAKK 154 (156)
Q Consensus 149 ~~~a~~ 154 (156)
+++|.+
T Consensus 550 ~~~A~~ 555 (681)
T 2pzi_A 550 RVGAVR 555 (681)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777754
No 132
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.22 E-value=0.0053 Score=40.06 Aligned_cols=98 Identities=4% Similarity=-0.014 Sum_probs=75.7
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHH-HHcCCCH--HHHHHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHG-YAENEYV--EQAISLYKDI 80 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~-~~~~g~~--~~a~~~~~~m 80 (156)
+...|..+-..+...|+.++|...++...+..- .+. ..|..+-.. +...|++ ++|.+.|++.
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~--------------~~~~~la~~l~~~~~~~~~~~A~~~~~~a 107 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENA--------------ELYAALATVLYYQASQHMTAQTRAMIDKA 107 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCH--------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCH--------------HHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 446677788888899999999999999876531 233 345555566 6788998 9999999998
Q ss_pred HHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 81 IASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 81 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
.+... -+...+..+-..+.+.|+.++|...++....
T Consensus 108 l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 108 LALDS-NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 87532 2356777788888999999999999998844
No 133
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.19 E-value=0.0051 Score=45.34 Aligned_cols=137 Identities=8% Similarity=-0.066 Sum_probs=95.1
Q ss_pred HhcCCCchHHHHHHHHHHHHhC-CCC----chHHHhHHHHHhhhcc---------------------------chHHHHH
Q 041561 14 SCAKLSSLFLGRQILTRIVKDG-YGN----DIFVGSAPINIYCNCG---------------------------VTWNEMI 61 (156)
Q Consensus 14 ~~~~~~~~~~a~~~~~~m~~~g-~~~----~~~~~~~li~~~~~~~---------------------------~~~~~li 61 (156)
.+...|+.++|...++...+.- -.+ ...++..+-..|...| .+++.+-
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3457789999999999886531 112 2355666666666655 3567777
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCC-CCChhh
Q 041561 62 HGYAENEYVEQAISLYKDIIAS----GVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPY-KDDLVV 135 (156)
Q Consensus 62 ~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~-~pd~~~ 135 (156)
..|...|++++|.+.|++..+- +-.+ ...++..+-..+.+.|++++|...++....-.. ..+. .....+
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~ 266 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFE-----ESNILPSLPQA 266 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCGGGHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----hhccchhHHHH
Confidence 8899999999999999887642 2111 123677788888899999999999887743110 0001 223567
Q ss_pred HHHHHHHHhhcCCHhHHhhh
Q 041561 136 WGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~~ 155 (156)
+..+-..|...|++++|.+.
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~ 286 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEY 286 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHH
Confidence 88888999999999999763
No 134
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.18 E-value=0.0023 Score=40.34 Aligned_cols=134 Identities=9% Similarity=-0.068 Sum_probs=91.9
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCC-CCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC--
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS-- 83 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 83 (156)
++..+-..+...|++++|...++...+..- .++.. .+. ..+..+-..+...|++++|.+.|++..+.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA---AER-------IAYSNLGNAYIFLGEFETASEYYKKTLLLAR 80 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH---HHH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCch---HHH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 456666777788999999999998765321 11111 111 46677888889999999999999987642
Q ss_pred --CCCcc-HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCC-CChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 84 --GVKHD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYK-DDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 84 --g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~-pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
+-.+. ...+..+-..+...|++++|.+.++....... ..+.. ....++..+-..|...|++++|.+.
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 151 (164)
T 3ro3_A 81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ-----ELKDRIGEGRACWSLGNAYTALGNHDQAMHF 151 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----HccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence 21121 44667777888899999999999887743211 00011 1245677888899999999998763
No 135
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.17 E-value=0.0052 Score=45.78 Aligned_cols=134 Identities=6% Similarity=-0.087 Sum_probs=94.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchH---HHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIF---VGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASG 84 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 84 (156)
+..+-..+.+.|++++|...++...+.- ++.. ........--.....|..+-.+|.+.|++++|.+.+++..+..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4555567778899999999999876520 0000 0000000000000677888899999999999999999998743
Q ss_pred CCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-ChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 85 VKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-DLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 85 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
. -+...+..+-.++.+.|++++|...|+...+. .| +...+..+-..+...++.+++.+.
T Consensus 304 p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-----------~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 304 P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEI-----------APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred c-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 25667888888999999999999999988433 34 667788888888888888887653
No 136
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.14 E-value=0.0052 Score=44.93 Aligned_cols=144 Identities=13% Similarity=0.026 Sum_probs=97.6
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCC-Cc--hHHHhHHHHHhhhcc--------------------------chH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYG-ND--IFVGSAPINIYCNCG--------------------------VTW 57 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~-~~--~~~~~~li~~~~~~~--------------------------~~~ 57 (156)
.+...=..+.+.|++++|...|+...+.+.. |. ..++..+-..|...| ..|
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3444555667889999999999988776321 11 345666666777666 456
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHhhcCCCc--------------------hHHHHHHH
Q 041561 58 NEMIHGYAENEYVEQAISLYKDIIAS----GVKH-DGVTFVAILTPCSHSGL--------------------VYAEVEIF 112 (156)
Q Consensus 58 ~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~--------------------~~~a~~~~ 112 (156)
..+-..|...|++++|.+.|++..+. +-.+ ...++..+-..+...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 77888899999999999999887642 1111 13477777888888999 99998888
Q ss_pred HhcccccccCCCcCCCCCC-ChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 113 NSMEHDHEVKPKCLMPYKD-DLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 113 ~~m~~~~~~~~~c~~~~~p-d~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
........- .+..| ...+|..+-..|...|++++|.+.
T Consensus 171 ~~al~~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 171 EENLSLVTA-----LGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHh-----ccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 765322110 00111 235677788888888998888753
No 137
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.14 E-value=0.0023 Score=46.77 Aligned_cols=99 Identities=8% Similarity=-0.035 Sum_probs=69.1
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCc-----hHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGND-----IFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKD 79 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 79 (156)
...+...+..+.+.|+.+.|+++++.|.+. .|| ..+...|.. +-+......++..+|+.+|++
T Consensus 136 lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Lae----------a~v~l~~g~~~~q~A~~~f~E 203 (310)
T 3mv2_B 136 TELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAE----------SYIKFATNKETATSNFYYYEE 203 (310)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHH----------HHHHHHHTCSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHH----------HHHHHHhCCccHHHHHHHHHH
Confidence 456677889999999999999999999774 462 322222221 111222234589999999999
Q ss_pred HHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 80 IIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 80 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
+.+. .|+..+-..++.++.+.|++++|...++.+.+
T Consensus 204 l~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 204 LSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8764 35433444555578899999999999997744
No 138
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.14 E-value=0.0059 Score=49.64 Aligned_cols=87 Identities=10% Similarity=0.063 Sum_probs=73.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc-HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC-C
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD-D 132 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p-d 132 (156)
..|+.+-.+|.+.|++++|.+.|++..+- .|+ ...|..+-..+.+.|++++|.+.|++..+. .| +
T Consensus 44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l-----------~P~~ 110 (723)
T 4gyw_A 44 AAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI-----------NPAF 110 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCC
Confidence 78888999999999999999999998764 343 567888888999999999999999987432 34 5
Q ss_pred hhhHHHHHHHHhhcCCHhHHhh
Q 041561 133 LVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~a~~ 154 (156)
...|+.+=..|...|++++|.+
T Consensus 111 ~~a~~~Lg~~~~~~g~~~eAi~ 132 (723)
T 4gyw_A 111 ADAHSNLASIHKDSGNIPEAIA 132 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHH
Confidence 6789999999999999999975
No 139
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.13 E-value=0.01 Score=42.65 Aligned_cols=138 Identities=9% Similarity=-0.025 Sum_probs=88.8
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHh----CCC-CchHHHhHHHHHhhhcc--------------------------c
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKD----GYG-NDIFVGSAPINIYCNCG--------------------------V 55 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~~--------------------------~ 55 (156)
+|+.+-..+.+.|++++|...++...+. |-. .-..+++.+-..|.+ | .
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 4555666677778888888777765442 211 113455555555555 4 4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHH----CCCCccH-HHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCC
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIA----SGVKHDG-VTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYK 130 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~ 130 (156)
+++.+-..|.+.|++++|.+.|++..+ .+..++. .++..+...+...|++++|...|+... .. | ...
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~---p----~~~ 228 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SI---P----GFS 228 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS---T----TST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC---C----CCC
Confidence 677788899999999999999999865 2332222 256666677778899999999999874 21 0 011
Q ss_pred --CChhhHHHHHHHHhhcCCHhHHhh
Q 041561 131 --DDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 131 --pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
........++.++ ..|+.+...+
T Consensus 229 ~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 229 GSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp TSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 1123455666666 5677776654
No 140
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0024 Score=38.07 Aligned_cols=87 Identities=10% Similarity=0.080 Sum_probs=65.4
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCC--
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD-- 132 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd-- 132 (156)
..|..+-..+...|++++|.+.|++..+.. ..+...+..+-.++.+.|++++|...++.... ..|+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~p~~~ 72 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR-----------YTSTAE 72 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----------SCSSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-----------hCCCcc
Confidence 346667778889999999999999988753 22566788888889999999999999998843 3454
Q ss_pred -----hhhHHHHHHHHhhcCCHhHHh
Q 041561 133 -----LVVWGDLVSSCQVHSNVRLAK 153 (156)
Q Consensus 133 -----~~~~~~li~~~~~~g~~~~a~ 153 (156)
...+..+-.++...|+.++|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 73 HVAIRSKLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence 455666666666777666554
No 141
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.10 E-value=0.014 Score=42.60 Aligned_cols=137 Identities=5% Similarity=-0.118 Sum_probs=87.8
Q ss_pred HhcCCCchHHHHHHHHHHHHhCCCCchH----HHhHHHHHhhhcc--------------------------chHHHHHHH
Q 041561 14 SCAKLSSLFLGRQILTRIVKDGYGNDIF----VGSAPINIYCNCG--------------------------VTWNEMIHG 63 (156)
Q Consensus 14 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~~--------------------------~~~~~li~~ 63 (156)
.+...|++++|...+++..+..-..+.. .++.+-..|...| .+++.+-..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3446788888888888766543112221 3333334444444 234567778
Q ss_pred HHcCCCHHHHHHHHHHHHHC----CCC--cc-HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhH
Q 041561 64 YAENEYVEQAISLYKDIIAS----GVK--HD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVW 136 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~ 136 (156)
+...|++++|.+.+++..+. +.. |. ...+..+-..+...|++++|...++....... ..+......+|
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~ 177 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS-----SYQPQQQLQCL 177 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-----TSCGGGGHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh-----ccCcHHHHHHH
Confidence 88999999999999987642 222 33 34566677788899999999999987643211 00011123567
Q ss_pred HHHHHHHhhcCCHhHHhhh
Q 041561 137 GDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 137 ~~li~~~~~~g~~~~a~~~ 155 (156)
..+-..+...|++++|.+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~ 196 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQ 196 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 7788889999999998753
No 142
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.08 E-value=0.0076 Score=41.92 Aligned_cols=138 Identities=10% Similarity=-0.027 Sum_probs=90.5
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhCC-CC-chHHHhHHHHHhhh--------cc--------------------c
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDGY-GN-DIFVGSAPINIYCN--------CG--------------------V 55 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~~-~~~~~~~li~~~~~--------~~--------------------~ 55 (156)
..+..+-..+.+.|+.++|...|+...+..- .| ....+..+-.+|.+ .| .
T Consensus 53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 132 (261)
T 3qky_A 53 DAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL 132 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh
Confidence 4556666777888999999999998877532 12 23445555555555 44 1
Q ss_pred hH-----------------HHHHHHHHcCCCHHHHHHHHHHHHHCCCCc--cHHHHHHHHHhhcCC----------CchH
Q 041561 56 TW-----------------NEMIHGYAENEYVEQAISLYKDIIASGVKH--DGVTFVAILTPCSHS----------GLVY 106 (156)
Q Consensus 56 ~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~----------~~~~ 106 (156)
.+ -.+-..|.+.|++++|.+.|++..+..... ....+..+-.++.+. |+++
T Consensus 133 ~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~ 212 (261)
T 3qky_A 133 VDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYR 212 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHH
Confidence 22 445677889999999999999998753221 234566666777655 8999
Q ss_pred HHHHHHHhcccccccCCCcCCCCCCCh----hhHHHHHHHHhhcCCHhHHhh
Q 041561 107 AEVEIFNSMEHDHEVKPKCLMPYKDDL----VVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 107 ~a~~~~~~m~~~~~~~~~c~~~~~pd~----~~~~~li~~~~~~g~~~~a~~ 154 (156)
+|...++..... .|+. .....+-..+...++++++..
T Consensus 213 ~A~~~~~~~~~~-----------~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 213 RAVELYERLLQI-----------FPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHHHHHHHHHHH-----------CTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHH-----------CCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 999999998554 3443 344455555666666655443
No 143
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.08 E-value=0.0052 Score=45.32 Aligned_cols=96 Identities=11% Similarity=-0.013 Sum_probs=64.4
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIAS----GVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPY 129 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~ 129 (156)
.+++.+-..|...|++++|.+.|++..+- +-.+ ...++..+-..+.+.|+.++|...++....-.. ....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~-----~~~~ 257 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR-----EKVP 257 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HHCG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----hhCC
Confidence 45667777888889999999888876541 2111 234566677778888999999888887743100 0001
Q ss_pred CCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 130 KDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 130 ~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.....++..+-..|...|++++|.+.
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~ 283 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQF 283 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 22356777778888888998888753
No 144
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.08 E-value=0.0082 Score=44.22 Aligned_cols=124 Identities=10% Similarity=-0.090 Sum_probs=84.7
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHh----CCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKD----GYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
++..+=..+...|+.++|...+++..+. +-.|+.. .++..+-..|.+.|++++|.+.|++..+
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-------------~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP-------------QAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH-------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455555666677777777777766542 2212211 5677888899999999999999988764
Q ss_pred C----CCCccHHHHHHHHHhhcCCCc---hHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 83 S----GVKHDGVTFVAILTPCSHSGL---VYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 83 ~----g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
- +-......+..+-..+...|+ +++|..+++... . .......+..+-..|...|++++|.+
T Consensus 293 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~----------~~~~~~~~~~la~~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 293 YSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-L----------YADLEDFAIDVAKYYHERKNFQKASA 360 (383)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-C----------HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-C----------HHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 2 222223345667777778888 888888888772 2 12344567788899999999999975
No 145
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.06 E-value=0.0033 Score=39.26 Aligned_cols=93 Identities=9% Similarity=0.086 Sum_probs=69.7
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCc
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASG--VKH 87 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p 87 (156)
-+=..+.+.|++++|...|+...+. .|+.. ..|+.+-.+|.+.|++++|.+.|++..+-. ..+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~-------------~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 77 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIEL--DPSNI-------------TFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH-------------HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccch
Confidence 3345667889999999999998774 34332 567788889999999999999999876521 111
Q ss_pred c----HHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 88 D----GVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 88 ~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
+ ..+|..+=..+...|++++|.+.|+.-..
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 23566666778889999999999987633
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.04 E-value=0.0077 Score=42.89 Aligned_cols=88 Identities=8% Similarity=-0.171 Sum_probs=66.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhh
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVV 135 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~ 135 (156)
.+..+-..+.+.|++++|.+.|++..+... -+...|..+-..+.+.|++++|...++..... -.-+...
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~ 74 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL----------DGQSVKA 74 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----------CTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------CCCCHHH
Confidence 345566777888999999999988876421 25667777788888899999999998887332 1235677
Q ss_pred HHHHHHHHhhcCCHhHHhh
Q 041561 136 WGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~ 154 (156)
|..+-.+|...|++++|.+
T Consensus 75 ~~~lg~~~~~~g~~~~A~~ 93 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIA 93 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHH
Confidence 8888888999999998875
No 147
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.00 E-value=0.015 Score=43.71 Aligned_cols=146 Identities=8% Similarity=-0.068 Sum_probs=92.0
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc------------------------------
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG------------------------------ 54 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~------------------------------ 54 (156)
..++..+-..+.+.|+.+.|...++...+.. +-+..++..+-..|...+
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3456667777888899999999999887653 223444544433332211
Q ss_pred ---------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH--HHHHHHH-hhcCCCchHHHHHHHHhcccccccC
Q 041561 55 ---------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV--TFVAILT-PCSHSGLVYAEVEIFNSMEHDHEVK 122 (156)
Q Consensus 55 ---------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~~~ 122 (156)
..|..+-..|...|++++|.+.|++..+....|... .+..+-. ...+.|+.++|...|.+..+- .
T Consensus 326 a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~ 402 (472)
T 4g1t_A 326 ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---N 402 (472)
T ss_dssp HHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---C
T ss_pred HhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---C
Confidence 567888899999999999999999988765444332 1222221 234778999998887765221 1
Q ss_pred CCc----------------CCC-CCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 123 PKC----------------LMP-YKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 123 ~~c----------------~~~-~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
|+. ... -+.+..+|+.+=..|...|++++|.+
T Consensus 403 ~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 403 QKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 110 000 12356788888888999999988865
No 148
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.99 E-value=0.021 Score=41.66 Aligned_cols=141 Identities=6% Similarity=-0.076 Sum_probs=87.4
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHh----CCC--C-chHHHhHHHHHhhhcc-------------------------ch
Q 041561 9 TTVLSSCAKLSSLFLGRQILTRIVKD----GYG--N-DIFVGSAPINIYCNCG-------------------------VT 56 (156)
Q Consensus 9 ~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~~-------------------------~~ 56 (156)
..+-..+...|++++|...++...+. |-. | ....+..+-..|...| ..
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 34455566778888888888876542 221 2 2334444555555555 24
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc-cHHHHH-----HHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCC
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKH-DGVTFV-----AILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYK 130 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~-----~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~ 130 (156)
|..+-..+...|++++|.+.+++.....-.+ +...+. .....+...|+.++|...++....... ....
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~------~~~~ 250 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF------ANNH 250 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC------TTCG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC------Ccch
Confidence 6667778889999999999999886421111 111121 233446689999999999998843210 0000
Q ss_pred CChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 131 DDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 131 pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.....+..+-..+...|++++|.+.
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~ 275 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIV 275 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1123566777889999999988753
No 149
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.97 E-value=0.011 Score=36.50 Aligned_cols=94 Identities=16% Similarity=0.033 Sum_probs=74.0
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
.+..+-..+.+.|++++|...++...+.. |+.. ..|..+-.++...|++++|.+.|++..+....
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~-------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PERE-------------EAWRSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34445567778999999999999988753 4322 56677777888999999999999998874322
Q ss_pred ccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 87 HDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
+...+..+-..+.+.|+.++|...++...
T Consensus 84 -~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 84 -DIAVHAALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45577788888999999999999999874
No 150
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.96 E-value=0.012 Score=39.25 Aligned_cols=91 Identities=11% Similarity=0.008 Sum_probs=71.8
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCcc--------------HHHHHHHHHhhcCCCchHHHHHHHHhccccc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASG-VKHD--------------GVTFVAILTPCSHSGLVYAEVEIFNSMEHDH 119 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--------------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 119 (156)
..|..+-..+...|++++|.+.|++..+.. -.|+ ...+..+-.++.+.|++++|...++.....
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI- 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence 456667778889999999999999987632 1221 267778888888999999999999988443
Q ss_pred ccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 120 EVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 120 ~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
...+...|..+-.+|...|++++|.+.
T Consensus 118 ---------~p~~~~~~~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 118 ---------DKNNVKALYKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp ---------STTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ---------CcccHHHHHHHHHHHHHcccHHHHHHH
Confidence 234678888899999999999999753
No 151
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.96 E-value=0.026 Score=41.52 Aligned_cols=137 Identities=7% Similarity=-0.054 Sum_probs=80.3
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHh----CCCC-chHHHhHHHHHhhhcc-------------------------ch
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKD----GYGN-DIFVGSAPINIYCNCG-------------------------VT 56 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~-------------------------~~ 56 (156)
+++.+=..+...|+.++|...++...+. |-.+ ...+++.|=..|.+.| .+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 4556667778889999999988887552 1111 1233444444444444 34
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCccHHHHHHHHHhhcCCCc---hHHHHHHHHhcccccccCCCcCCCC
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIAS----GVKHDGVTFVAILTPCSHSGL---VYAEVEIFNSMEHDHEVKPKCLMPY 129 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~c~~~~ 129 (156)
+..+-..|.+.|++++|.+.|++..+- +-......+..+-..+...++ +++|...++.. .. .
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~----------~ 332 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NL----------H 332 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TC----------H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CC----------h
Confidence 555666677777777777777766542 112223344444455555666 66666666653 11 1
Q ss_pred CCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 130 KDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 130 ~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
......+..+-..|...|++++|.+
T Consensus 333 ~~~~~~~~~la~~y~~~g~~~~A~~ 357 (378)
T 3q15_A 333 AYIEACARSAAAVFESSCHFEQAAA 357 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 2233456677788889999988865
No 152
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.96 E-value=0.0077 Score=39.47 Aligned_cols=134 Identities=7% Similarity=-0.018 Sum_probs=89.9
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc---------------c---hHHHHHHH--HHc
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------V---TWNEMIHG--YAE 66 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---------------~---~~~~li~~--~~~ 66 (156)
.+...-..+.+.|++++|...++...+.. +.+...+..+-..|.+.| . .+..+... +..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 34555667788999999999999875532 235566777777777666 0 11111111 111
Q ss_pred CCCHHHHHHHHHHHHHCCCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC---ChhhHHHHHHH
Q 041561 67 NEYVEQAISLYKDIIASGVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD---DLVVWGDLVSS 142 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p---d~~~~~~li~~ 142 (156)
.+...++.+.|++..+. .| +...+..+-..+.+.|+.++|...|+...+. .| +...+..+...
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----------~p~~~~~~a~~~l~~~ 153 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKV-----------NLGAQDGEVKKTFMDI 153 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----------CTTTTTTHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----------CcccChHHHHHHHHHH
Confidence 12223456667666653 34 4567777888888999999999999988433 34 35688999999
Q ss_pred HhhcCCHhHHhh
Q 041561 143 CQVHSNVRLAKK 154 (156)
Q Consensus 143 ~~~~g~~~~a~~ 154 (156)
+...|+.++|..
T Consensus 154 ~~~~g~~~~A~~ 165 (176)
T 2r5s_A 154 LSALGQGNAIAS 165 (176)
T ss_dssp HHHHCSSCHHHH
T ss_pred HHHhCCCCcHHH
Confidence 999999998865
No 153
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.93 E-value=0.0068 Score=48.73 Aligned_cols=130 Identities=6% Similarity=-0.099 Sum_probs=97.3
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc--------------------chHHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG--------------------VTWNEMIHGY 64 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~--------------------~~~~~li~~~ 64 (156)
...+..+-..+.+.|+.++|...++...+.. +-+...|..+=.+|.+.| ..|..+-.+|
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATA 511 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 4556667778888999999999999987643 235567776666666666 6788888899
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCC-hhhHHHHHHHH
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD-LVVWGDLVSSC 143 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd-~~~~~~li~~~ 143 (156)
.+.|++++ .+.|++..+... -+...|..+-.++.+.|+.++|.+.|++..+ +.|+ ...|..+-.++
T Consensus 512 ~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----------l~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLDEVPP-----------TSRHFTTARLTSAVTL 578 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT-----------TSTTHHHHHHHHHHHT
T ss_pred HHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHhhcc-----------cCcccHHHHHHHHHHH
Confidence 99999999 999999877432 2456788888999999999999999998843 3454 56677777777
Q ss_pred hhcCC
Q 041561 144 QVHSN 148 (156)
Q Consensus 144 ~~~g~ 148 (156)
...|+
T Consensus 579 ~~~~~ 583 (681)
T 2pzi_A 579 LSGRS 583 (681)
T ss_dssp C----
T ss_pred HccCC
Confidence 66554
No 154
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.91 E-value=0.0093 Score=46.30 Aligned_cols=123 Identities=6% Similarity=-0.107 Sum_probs=87.5
Q ss_pred hcCCCchHHHHHHHHHHHHh--C-CCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH---C---CC
Q 041561 15 CAKLSSLFLGRQILTRIVKD--G-YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA---S---GV 85 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~--g-~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~---g~ 85 (156)
+-..|++++|+.++++..+. . +.|+-.. .+ .+++.|..+|...|++++|..++++..+ . .-
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~--~a--------~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLY--VL--------RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH--HH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH--HH--------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 45789999999999887542 1 2232211 11 6789999999999999999999998753 1 24
Q ss_pred CccHH-HHHHHHHhhcCCCchHHHHHHHHhcc----cccccCCCcCCCCCCChhh-HHHHHHHHhhcCCHhHHhh
Q 041561 86 KHDGV-TFVAILTPCSHSGLVYAEVEIFNSME----HDHEVKPKCLMPYKDDLVV-WGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 86 ~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~~~~~c~~~~~pd~~~-~~~li~~~~~~g~~~~a~~ 154 (156)
+|+.. +++.|-..|...|++++|..++++-. ..+| +-.|++.. .+.+-+++...|.+++|+.
T Consensus 389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG-------~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG-------PSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-------TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56554 78889999999999999999887653 2234 14566644 4455577777888887764
No 155
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.89 E-value=0.0074 Score=44.19 Aligned_cols=90 Identities=13% Similarity=-0.009 Sum_probs=74.5
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc--------------HHHHHHHHHhhcCCCchHHHHHHHHhcccccc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD--------------GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHE 120 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 120 (156)
..|..+-..|.+.|++++|.+.|++..+...... ...|..+-..+.+.|++++|...++.....
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-- 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 5677788889999999999999999877432221 478888889999999999999999988443
Q ss_pred cCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 121 VKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 121 ~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
-..+...|..+=.+|...|++++|.+
T Consensus 226 --------~p~~~~a~~~lg~~~~~~g~~~~A~~ 251 (336)
T 1p5q_A 226 --------DSNNEKGLSRRGEAHLAVNDFELARA 251 (336)
T ss_dssp --------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 23477889999999999999999975
No 156
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.84 E-value=0.0043 Score=44.30 Aligned_cols=109 Identities=12% Similarity=-0.027 Sum_probs=80.6
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHH-hhhcc--------------------chHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINI-YCNCG--------------------VTWNEMIHG 63 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~~--------------------~~~~~li~~ 63 (156)
...+..+-..+.+.|+.++|...++..... .|+.......... +.+.+ ..+..+-..
T Consensus 151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~ 228 (287)
T 3qou_A 151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQ 228 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHH
Confidence 456777888889999999999999988654 2444332222221 21111 677888899
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCC-ccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 64 YAENEYVEQAISLYKDIIASGVK-HDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 64 ~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
+...|++++|.+.|.+..+.... .+...+..+...+...|+.+++...+++-
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 99999999999999999885433 23668889999999999999988877653
No 157
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.83 E-value=0.012 Score=47.49 Aligned_cols=137 Identities=7% Similarity=-0.092 Sum_probs=70.3
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCC---------CC------------chHHHhHHHHHhhhcc------------
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGY---------GN------------DIFVGSAPINIYCNCG------------ 54 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~---------~~------------~~~~~~~li~~~~~~~------------ 54 (156)
|-..+...-+.|+++.|+++|+.+.+... .| ...+|...++..-+.|
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44455566677889999999998876420 13 1224544444433332
Q ss_pred ------chHHHHHH---HHHc-CCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCC
Q 041561 55 ------VTWNEMIH---GYAE-NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPK 124 (156)
Q Consensus 55 ------~~~~~li~---~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 124 (156)
.++...+. .-.+ .++++.|.++|+...+. ..-+...+...++.....|+.+.|+.+|+.....
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~------ 533 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK------ 533 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT------
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh------
Confidence 01111111 1112 23356666666665543 1223334445555555556666666666655322
Q ss_pred cCCCCC---CChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 125 CLMPYK---DDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 125 c~~~~~---pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.. -....|..++.--...|+.+.+.+|
T Consensus 534 ----~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 534 ----ISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp ----SSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11 1235566666666666666666554
No 158
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.0017 Score=38.78 Aligned_cols=96 Identities=9% Similarity=-0.063 Sum_probs=66.4
Q ss_pred CCcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 3 PTQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
++...|..+-..+.+.|+.++|...|+...+.. |+.. ..|..+-.++.+.|++++|.+.|++..+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~-------------~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNP-------------VGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCH-------------HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345667777788899999999999999987753 3221 5667778889999999999999999886
Q ss_pred CCCCcc-------HHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 83 SGVKHD-------GVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 83 ~g~~p~-------~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
. .|+ ...+..+-.++...|+.+.+...++.+
T Consensus 67 ~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 67 Y--TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp S--CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred h--CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 4 344 233444444444555555554444443
No 159
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.80 E-value=0.024 Score=49.41 Aligned_cols=137 Identities=16% Similarity=0.129 Sum_probs=85.4
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc----------------chHHHHHHHHHcCCCH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------VTWNEMIHGYAENEYV 70 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----------------~~~~~li~~~~~~g~~ 70 (156)
.|..+...+.+.|+++.|.+.+... .|..+|.-+-.+|...| ..+..++.-|-+.|.+
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCH
Confidence 4555555666666666665555544 33455554444443332 3566788889999999
Q ss_pred HHHHHHHHHHHH-CCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCH
Q 041561 71 EQAISLYKDIIA-SGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNV 149 (156)
Q Consensus 71 ~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~ 149 (156)
++|.++++.-.. ..-+...+|.-.++.+-.+.+++.+..++|..-..-..+ ....-+...|.-++..|.+.|++
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~-----~r~~e~~~lW~elv~LY~~~~e~ 1371 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKV-----LRAAEQAHLWAELVFLYDKYEEY 1371 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHHHHHHHHhcccH
Confidence 999999966543 233444445555666666777888777777644111000 00012678899999999999999
Q ss_pred hHHhh
Q 041561 150 RLAKK 154 (156)
Q Consensus 150 ~~a~~ 154 (156)
+.|..
T Consensus 1372 dnA~~ 1376 (1630)
T 1xi4_A 1372 DNAII 1376 (1630)
T ss_pred HHHHH
Confidence 99973
No 160
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.76 E-value=0.02 Score=40.73 Aligned_cols=96 Identities=6% Similarity=-0.102 Sum_probs=75.0
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCC-chHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGN-DIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
+...+..+-..+.+.|+.++|...++...+. .| +. ..|..+-.+|.+.|++++|.+.|++..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~--------------~~~~~la~~~~~~~~~~~A~~~~~~al~ 66 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVA--------------VYYTNRALCYLKMQQPEQALADCRRALE 66 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccH--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3456667777888999999999999998775 24 34 5667777888899999999999998876
Q ss_pred CCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 83 SGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 83 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
.. .-+...+..+-.++.+.|++++|...|....
T Consensus 67 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 67 LD-GQSVKAHFFLGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp SC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 2245677778888889999999999888763
No 161
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.72 E-value=0.019 Score=32.57 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=58.8
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..|..+-..+...|++++|.+.|++..+.. ..+...+..+-..+.+.|++++|...++..... ...+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------~p~~~~ 78 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------DPNNAE 78 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------CTTCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----------CCCCHH
Confidence 355667778889999999999999987653 224567788888899999999999999988443 122455
Q ss_pred hHHHHHHHHhh
Q 041561 135 VWGDLVSSCQV 145 (156)
Q Consensus 135 ~~~~li~~~~~ 145 (156)
.+..+-..+..
T Consensus 79 ~~~~l~~~~~~ 89 (91)
T 1na3_A 79 AKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 56555555544
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.69 E-value=0.0094 Score=37.10 Aligned_cols=91 Identities=10% Similarity=0.006 Sum_probs=66.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCC---
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD--- 132 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd--- 132 (156)
.+..+=..+.+.|++++|.+.|++..+-. .-+...|..+-.++.+.|++++|.+.++...+-.. ...++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~ 81 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR-------ETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------HTTCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc-------ccchhhHH
Confidence 45556667889999999999999987743 22456788888899999999999999988743210 01111
Q ss_pred -hhhHHHHHHHHhhcCCHhHHhh
Q 041561 133 -LVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 133 -~~~~~~li~~~~~~g~~~~a~~ 154 (156)
..+|..+=..+...|++++|.+
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~ 104 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQ 104 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHH
Confidence 2356666677888999998875
No 163
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.68 E-value=0.0077 Score=40.73 Aligned_cols=82 Identities=10% Similarity=0.041 Sum_probs=64.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCccH-HHHHH----------------HHHhhcCCCchHHHHHHHHhcccccccCCC
Q 041561 62 HGYAENEYVEQAISLYKDIIASGVKHDG-VTFVA----------------ILTPCSHSGLVYAEVEIFNSMEHDHEVKPK 124 (156)
Q Consensus 62 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 124 (156)
..+...|++++|.+.|++..+. .|+. ..|.. +-..+.+.|++++|...|+...+.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------ 83 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK------ 83 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------
Confidence 3456889999999999998764 3433 34555 777888999999999999988543
Q ss_pred cCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 125 CLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 125 c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
-+-+...|..+=..|...|++++|.+.
T Consensus 84 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~ 110 (208)
T 3urz_A 84 ----APNNVDCLEACAEMQVCRGQEKDALRM 110 (208)
T ss_dssp ----CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 133678899999999999999999763
No 164
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.56 E-value=0.017 Score=46.59 Aligned_cols=126 Identities=12% Similarity=0.078 Sum_probs=93.8
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHh-C-CCCchHHHhHHHHHhhhcc-------------------chHHHHHHHHH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKD-G-YGNDIFVGSAPINIYCNCG-------------------VTWNEMIHGYA 65 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~-g-~~~~~~~~~~li~~~~~~~-------------------~~~~~li~~~~ 65 (156)
.|...++...+.|+++.|+++|+...+. + ..+...+..+.|...+... ..|...+.-..
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 5777788888889999999999999876 3 3455666666666554321 45667777777
Q ss_pred cCCCHHHHHHHHHHHHHCCCC--ccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHH
Q 041561 66 ENEYVEQAISLYKDIIASGVK--HDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSC 143 (156)
Q Consensus 66 ~~g~~~~a~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~ 143 (156)
..|+.+.|..+|+........ -....|...++.-.+.|+.+.+..+.+.+.+. .|+......+++=|
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~-----------~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK-----------FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-----------STTCCHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCcHHHHHHHHh
Confidence 789999999999998775432 24568999999999999999999999999554 46655555555444
No 165
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.49 E-value=0.04 Score=40.29 Aligned_cols=104 Identities=10% Similarity=-0.070 Sum_probs=76.7
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhH------HHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHH
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSA------PINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDII 81 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~------li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 81 (156)
+..+=..+.+.|++++|...|+...+. .|+...+.. .+..+ ....|..+-.+|.+.|++++|.+.|++..
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l--~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAV--KNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHH--HTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445556778899999999999998764 244332110 00000 00377888899999999999999999987
Q ss_pred HCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 82 ASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 82 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
+.. .-+...|..+-.++.+.|++++|...|+...
T Consensus 258 ~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 258 TEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 743 2356788888899999999999999999884
No 166
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.47 E-value=0.02 Score=43.75 Aligned_cols=89 Identities=8% Similarity=-0.125 Sum_probs=66.4
Q ss_pred CCCchHHHHHHHHHHHHh--C-CCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH-----C-CCCc
Q 041561 17 KLSSLFLGRQILTRIVKD--G-YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA-----S-GVKH 87 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~--g-~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~-g~~p 87 (156)
..|++++|+.++++..+. . +.|+-. ..+ .+++.|..+|...|++++|..++++..+ - .-+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp--~~a--------~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 379 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNV--YML--------HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL 379 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSH--HHH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhch--HHH--------HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 456778888888876441 1 222221 011 6789999999999999999999999763 1 2466
Q ss_pred cHH-HHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 88 DGV-TFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 88 ~~~-t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
+.. +++.|-..|...|++++|..++++-
T Consensus 380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 665 6889999999999999999988765
No 167
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.44 E-value=0.11 Score=35.11 Aligned_cols=90 Identities=8% Similarity=-0.040 Sum_probs=52.5
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCC----CHHHHHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENE----YVEQAISLYKDI 80 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m 80 (156)
+.++..+=..+...++.++|...|+...+.| ++..+..| =..|.. + ++++|.+.|++-
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~l--------------g~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALL--------------AQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHH--------------HHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHH--------------HHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3344455555666789999999999887765 34333333 223333 3 666666666666
Q ss_pred HHCCCCccHHHHHHHHHhhcC----CCchHHHHHHHHhc
Q 041561 81 IASGVKHDGVTFVAILTPCSH----SGLVYAEVEIFNSM 115 (156)
Q Consensus 81 ~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m 115 (156)
.+.| +...+..+-..+.. .++.++|...|+.-
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 115 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDA 115 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence 5544 33344444444444 56666666666665
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.43 E-value=0.018 Score=37.01 Aligned_cols=59 Identities=7% Similarity=0.026 Sum_probs=24.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
.|..+-.+|.+.|++++|.+.++...+.. ..+...|..+-.++...|++++|...|...
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 34444444444444444444444444321 112333344444444444444444444443
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.39 E-value=0.022 Score=36.52 Aligned_cols=81 Identities=7% Similarity=-0.070 Sum_probs=59.7
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHh--------C---------CCCchHHHhHHHHHhhhcc----------------
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKD--------G---------YGNDIFVGSAPINIYCNCG---------------- 54 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~--------g---------~~~~~~~~~~li~~~~~~~---------------- 54 (156)
+...=..+.+.|+++.|...|....+. . -+.+...|..+-.+|.+.|
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 334445667889999999999987664 0 1123456777777777776
Q ss_pred ----chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH
Q 041561 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV 90 (156)
Q Consensus 55 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 90 (156)
..|..+-.+|...|++++|.+.|+...+- .|+..
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 56788889999999999999999998763 45544
No 170
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.36 E-value=0.07 Score=41.28 Aligned_cols=135 Identities=11% Similarity=0.079 Sum_probs=79.5
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHH-------------hh--h-----------ccchHHHH
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINI-------------YC--N-----------CGVTWNEM 60 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-------------~~--~-----------~~~~~~~l 60 (156)
.|-.-+..+.+.|+++.|..+++...+. +.+...|...... +. . ....|-..
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 3444555667789999999999999887 4444444332221 10 0 00345555
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHH
Q 041561 61 IHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140 (156)
Q Consensus 61 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li 140 (156)
+.-.-+.+.++.|.++|+.....+..++.....+.+.... .++.+.|+.+|+...+..+ -+...|...+
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~----------~~~~~~~~yi 361 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHP----------DSTLLKEEFF 361 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCT----------TCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCC----------CCHHHHHHHH
Confidence 5555567789999999998822222222222223333322 2368999999998755432 1233455666
Q ss_pred HHHhhcCCHhHHhh
Q 041561 141 SSCQVHSNVRLAKK 154 (156)
Q Consensus 141 ~~~~~~g~~~~a~~ 154 (156)
.-....|+.++|+.
T Consensus 362 d~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 362 LFLLRIGDEENARA 375 (493)
T ss_dssp HHHHHHTCHHHHHH
T ss_pred HHHHHcCCHHHHHH
Confidence 66666777777664
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.24 E-value=0.038 Score=36.31 Aligned_cols=101 Identities=7% Similarity=-0.110 Sum_probs=69.9
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHHhC-CCC-chHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH-
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVKDG-YGN-DIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA- 82 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 82 (156)
.++..+-..+...|++++|...+++..+.- -.+ +... .. ..+..+-..+...|++++|.+.|++...
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA---AS-------ANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH---HH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH---HH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345666677788999999999999875531 112 2100 00 4567777888899999999999998763
Q ss_pred ---CCCC-ccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 83 ---SGVK-HDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 83 ---~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
.+.. .-..++..+-..+.+.|++++|.+.+++..
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2211 113345677788889999999999888764
No 172
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.23 E-value=0.027 Score=42.94 Aligned_cols=94 Identities=6% Similarity=-0.038 Sum_probs=69.6
Q ss_pred HHHhcCCCchHHHHHHHHHHHHh--C-CCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH------
Q 041561 12 LSSCAKLSSLFLGRQILTRIVKD--G-YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA------ 82 (156)
Q Consensus 12 l~~~~~~~~~~~a~~~~~~m~~~--g-~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------ 82 (156)
+..+.+.|+.++|+.+++...+. . +.|+-.. .+ .+++.|..+|...|++++|++++++...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~--~~--------~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~l 363 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIY--QL--------KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFF 363 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH--HH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchH--HH--------HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHc
Confidence 44455678888888888877642 2 2222211 11 6789999999999999999999998763
Q ss_pred CCCCccHH-HHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 83 SGVKHDGV-TFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 83 ~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
-..+|+.- +++.|-..|...|++++|..++++-
T Consensus 364 g~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 364 PGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 13456654 6888999999999999999887765
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.19 E-value=0.0077 Score=37.76 Aligned_cols=96 Identities=7% Similarity=-0.011 Sum_probs=67.9
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCC-ccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIAS----GVK-HDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPY 129 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~ 129 (156)
..+..+-..|...|++++|.+.|++..+. +-. .-..++..+-..+...|++++|...++.......- .+.
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-----~~~ 84 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ-----LKD 84 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----hCC
Confidence 45677778888999999999999987642 111 11246777888888999999999999887432110 000
Q ss_pred CC-ChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 130 KD-DLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 130 ~p-d~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.+ ....+..+-..+...|++++|.+.
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~ 111 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDY 111 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11 145677788899999999999763
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.18 E-value=0.023 Score=41.54 Aligned_cols=88 Identities=11% Similarity=-0.037 Sum_probs=71.2
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH------------------HHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV------------------TFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------------------t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
..|..+-..+.+.|++++|.+.|++.... .|+.. .|..+-.++.+.|++++|...++...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777888999999999999997653 34443 77788888899999999999999884
Q ss_pred cccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 117 HDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 117 ~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
.. -..+...|..+=.+|...|++++|.+
T Consensus 258 ~~----------~p~~~~a~~~lg~a~~~~g~~~~A~~ 285 (338)
T 2if4_A 258 TE----------EEKNPKALFRRGKAKAELGQMDSARD 285 (338)
T ss_dssp HH----------CTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred Hh----------CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 43 13367889999999999999999976
No 175
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.18 E-value=0.036 Score=39.91 Aligned_cols=105 Identities=10% Similarity=-0.030 Sum_probs=68.1
Q ss_pred HHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc----------------------chHHHHHHHHHcCCC
Q 041561 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------------VTWNEMIHGYAENEY 69 (156)
Q Consensus 12 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----------------------~~~~~li~~~~~~g~ 69 (156)
...+...|++++|.++|+.+...+ |+....-.+-..|.+.+ ..+-.+=.++.+.|+
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence 345566788888888888776543 43322222222333333 134445567889999
Q ss_pred HHHHHHHHHHHHHCCCCccH--HHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 70 VEQAISLYKDIIASGVKHDG--VTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
+++|++.|++-......|.. ......-.++.+.|+.++|..+|+++...
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999998754332642 24445556667899999999999999543
No 176
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.15 E-value=0.036 Score=42.31 Aligned_cols=90 Identities=12% Similarity=-0.096 Sum_probs=73.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cc-------------HHHHHHHHHhhcCCCchHHHHHHHHhcccccc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVK-HD-------------GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHE 120 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~-------------~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 120 (156)
..|..+-..|.+.|++++|...|++..+.... ++ ...|..+-.++.+.|++++|...++.....
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-- 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 46777788899999999999999998763211 11 477888888999999999999999988443
Q ss_pred cCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 121 VKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 121 ~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
-..+...|..+=.+|...|++++|.+
T Consensus 347 --------~p~~~~a~~~~g~a~~~~g~~~~A~~ 372 (457)
T 1kt0_A 347 --------DSANEKGLYRRGEAQLLMNEFESAKG 372 (457)
T ss_dssp --------STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------CCccHHHHHHHHHHHHHccCHHHHHH
Confidence 23467889999999999999999975
No 177
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.12 E-value=0.019 Score=34.02 Aligned_cols=86 Identities=6% Similarity=0.044 Sum_probs=63.1
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..|..+-..|...|++++|.+.|++..+.... +...|..+-.++.+.|++++|.+.++....... -.++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~--------~~~~~~ 78 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR--------EEGTQK 78 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------HHSCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh--------cCCchh
Confidence 45667778889999999999999998875422 345788888899999999999999998743211 235666
Q ss_pred hHHHHHHHHhhcCCH
Q 041561 135 VWGDLVSSCQVHSNV 149 (156)
Q Consensus 135 ~~~~li~~~~~~g~~ 149 (156)
...-+-..+...+..
T Consensus 79 ~~~~l~~~l~~~~~~ 93 (100)
T 3ma5_A 79 DLSELQDAKLKAEGL 93 (100)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcccc
Confidence 666666666555443
No 178
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.04 E-value=0.033 Score=41.45 Aligned_cols=90 Identities=9% Similarity=-0.082 Sum_probs=71.3
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHC--------------CCCc-cHHHHHHHHHhhcCCCchHHHHHHHHhccccc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIAS--------------GVKH-DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDH 119 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 119 (156)
..|..+-..+.+.|++++|.+.|++..+. ...| +...|..+-.++.+.|++++|...++...+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 45677788889999999999999988751 0222 3457778888888999999999999988432
Q ss_pred ccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 120 EVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 120 ~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
-..+...|..+=.+|...|++++|.+
T Consensus 303 ---------~p~~~~a~~~lg~~~~~~g~~~eA~~ 328 (370)
T 1ihg_A 303 ---------DPSNTKALYRRAQGWQGLKEYDQALA 328 (370)
T ss_dssp ---------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------CchhHHHHHHHHHHHHHccCHHHHHH
Confidence 12367888888899999999999975
No 179
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.98 E-value=0.039 Score=33.46 Aligned_cols=64 Identities=8% Similarity=0.076 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHH
Q 041561 69 YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSS 142 (156)
Q Consensus 69 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~ 142 (156)
|.-+..+-++.+....+.|+.....+.++||-|..|+..|.++|+..+.+. .+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~----------~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA----------GPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh----------cCchhhHHHHHHH
Confidence 445666667777777899999999999999999999999999999997663 3445678887764
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.94 E-value=0.068 Score=39.61 Aligned_cols=142 Identities=5% Similarity=-0.139 Sum_probs=95.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHH-hCCCCchH---HHhHHHHHhhhc-c--------------------------ch
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVK-DGYGNDIF---VGSAPINIYCNC-G--------------------------VT 56 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~---~~~~li~~~~~~-~--------------------------~~ 56 (156)
+..+...|.+.|++++|...+..+.+ .+-.++.. ....++..+... | ..
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 56778889999999999999988754 22222221 112222222221 1 46
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCcc-HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCC
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIAS----GVKHD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKD 131 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~p 131 (156)
+..+...|...|++++|.+++++.... +-.|. ..++..+.+.|...|++++|..+++....... ..+..|
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~ 212 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN-----SIYCPT 212 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HSCCCH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh-----cCCCch
Confidence 778899999999999999999987642 22333 34788888999999999999999887633211 011111
Q ss_pred C--hhhHHHHHHHHhhcCCHhHHhh
Q 041561 132 D--LVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 132 d--~~~~~~li~~~~~~g~~~~a~~ 154 (156)
. ...|..+...+...|++++|.+
T Consensus 213 ~~~~~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 213 QTVAELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 1 3567777788888899888764
No 181
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=95.94 E-value=0.38 Score=36.61 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=7.2
Q ss_pred CCCHHHHHHHHHHHHH
Q 041561 67 NEYVEQAISLYKDIIA 82 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~ 82 (156)
.++.++|.+.|++..+
T Consensus 164 ~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 164 TRDYVMAREWYSKAAE 179 (490)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3344444444444443
No 182
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.87 E-value=0.028 Score=33.77 Aligned_cols=85 Identities=13% Similarity=0.046 Sum_probs=60.3
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..|..+-..|...|++++|.+.|++..+... .+...|..+-..+.+.|+.++|...|+....... -.++..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~ 90 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ--------SRGDQQ 90 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------HHTCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--------ccccHH
Confidence 5678888889999999999999999877532 2355777788888899999999999988743211 123555
Q ss_pred hHHHHHHHHhhcCC
Q 041561 135 VWGDLVSSCQVHSN 148 (156)
Q Consensus 135 ~~~~li~~~~~~g~ 148 (156)
....+...+...++
T Consensus 91 ~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 91 VVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 55555555544443
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.82 E-value=0.035 Score=42.72 Aligned_cols=82 Identities=12% Similarity=0.018 Sum_probs=66.7
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHH
Q 041561 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSS 142 (156)
Q Consensus 63 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~ 142 (156)
.+.+.|++++|.+.|++..+.. .-+..+|..+-.++.+.|++++|...+++..+. -..+...|..+=.+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----------~p~~~~~~~~lg~~ 83 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL----------DKKYIKGYYRRAAS 83 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----------CTTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHH
Confidence 4567899999999999987742 224678888889999999999999999988433 13367889999999
Q ss_pred HhhcCCHhHHhhh
Q 041561 143 CQVHSNVRLAKKA 155 (156)
Q Consensus 143 ~~~~g~~~~a~~~ 155 (156)
|...|++++|.+.
T Consensus 84 ~~~~g~~~eA~~~ 96 (477)
T 1wao_1 84 NMALGKFRAALRD 96 (477)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHH
Confidence 9999999999763
No 184
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=95.67 E-value=0.21 Score=35.30 Aligned_cols=105 Identities=12% Similarity=0.059 Sum_probs=69.8
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHhCC---CCc--hHHHhHHHHHhhhcc---------------------------chHH
Q 041561 11 VLSSCAKLSSLFLGRQILTRIVKDGY---GND--IFVGSAPINIYCNCG---------------------------VTWN 58 (156)
Q Consensus 11 ll~~~~~~~~~~~a~~~~~~m~~~g~---~~~--~~~~~~li~~~~~~~---------------------------~~~~ 58 (156)
+-..+...|+.++|...+....+.-. .+. ..+++.+-..|...| .+|+
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 33445566777777777776654221 111 335555555565555 3677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHC----CCCc-cHHHHHHHHHhhcCCCchHHH-HHHHHhc
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIAS----GVKH-DGVTFVAILTPCSHSGLVYAE-VEIFNSM 115 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a-~~~~~~m 115 (156)
.+-..|...|++++|.+.|++..+- +..+ -..+|..+-..+.+.|+.++| ...++.-
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 7888999999999999999987542 2111 156778888888899999999 6655543
No 185
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.23 Score=36.67 Aligned_cols=138 Identities=9% Similarity=-0.035 Sum_probs=84.6
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCC-Cch---------------HHHhHHHHHhhhcc----------------------
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYG-NDI---------------FVGSAPINIYCNCG---------------------- 54 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~-~~~---------------~~~~~li~~~~~~~---------------------- 54 (156)
+.+.+.|++++|.+.|..+.+..-. .+. .....|...|.+.|
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3456789999999999998764321 111 12445566666665
Q ss_pred ----chHHHHHHHHHcCCCHHHHHHHHHHHHH----CCCCcc-HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCc
Q 041561 55 ----VTWNEMIHGYAENEYVEQAISLYKDIIA----SGVKHD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKC 125 (156)
Q Consensus 55 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c 125 (156)
...+.+=..+...|+.+++.+++.+... .+..+. ..++..+...+...|++++|..+++.......
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~----- 166 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK----- 166 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH-----
Confidence 1111122222345667777777776543 233333 34666777788888888888888877643321
Q ss_pred CCCCCC-ChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 126 LMPYKD-DLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 126 ~~~~~p-d~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
...-+| ...+|..+...|...|++++|..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 197 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKAS 197 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 001122 245788889999999999998753
No 186
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.42 E-value=0.13 Score=38.58 Aligned_cols=99 Identities=6% Similarity=-0.148 Sum_probs=65.3
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHh-----CC--CCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHH
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKD-----GY--GNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLY 77 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~--~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 77 (156)
...||.+=..+-..|+.++|.+.|++..+. +. .|+.. .+|+.+-.+|...|++++|...|
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~-------------~~~~nla~~y~~~g~~~~A~~~~ 117 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSL-------------VTWGNYAWVYYHMGRLSDVQIYV 117 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTH-------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHH-------------HHHHHHHHHHHHcCChHHHHHHH
Confidence 456788878888899999999999876441 11 22221 57788888888999999998888
Q ss_pred HHHHHC-----C-CCcc-HHHHHHHHHhhc--CCCchHHHHHHHHhcc
Q 041561 78 KDIIAS-----G-VKHD-GVTFVAILTPCS--HSGLVYAEVEIFNSME 116 (156)
Q Consensus 78 ~~m~~~-----g-~~p~-~~t~~~ll~~~~--~~~~~~~a~~~~~~m~ 116 (156)
++..+- + ..++ ..++...-.++. ..++.++|...|+...
T Consensus 118 ~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal 165 (472)
T 4g1t_A 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL 165 (472)
T ss_dssp HHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 876531 1 1121 233433333333 3457889999988773
No 187
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.40 E-value=0.043 Score=32.94 Aligned_cols=28 Identities=14% Similarity=0.134 Sum_probs=17.5
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIA 82 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 82 (156)
..|..+-.+|...|++++|.+.|++..+
T Consensus 54 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 54 VAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555566666666666666666666543
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.39 E-value=0.072 Score=41.32 Aligned_cols=100 Identities=7% Similarity=-0.075 Sum_probs=76.1
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHH-----hCC-CCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVK-----DGY-GNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKD 79 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g~-~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 79 (156)
.+++.+...|...|++++|+.++++..+ .|- .|++- .+++.|-..|...|++++|..++++
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a-------------~~l~nLa~~~~~~G~~~eA~~~~~~ 418 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG-------------MAVMRAGLTNWHAGHIEVGHGMICK 418 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH-------------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH-------------HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5788899999999999999999998754 221 23332 6789999999999999999999988
Q ss_pred HHH-----CC-CCccHHH-HHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 80 IIA-----SG-VKHDGVT-FVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 80 m~~-----~g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
-.+ -| -+|++.. .+.+-.++...+.+++|..++..+++.
T Consensus 419 Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 419 AYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 653 23 3565553 444446666788999999999998553
No 189
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=95.22 E-value=0.72 Score=35.01 Aligned_cols=119 Identities=9% Similarity=-0.002 Sum_probs=73.6
Q ss_pred CCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhh----cc------------------chHHHHHHHHHc----CCCHH
Q 041561 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCN----CG------------------VTWNEMIHGYAE----NEYVE 71 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~------------------~~~~~li~~~~~----~g~~~ 71 (156)
.++.+.|...|....+.| ++..+..|=..|.. .+ ..+..|=..|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 677888888888776654 34445555455544 22 344555556666 67888
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHhhcC----CCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhh--
Q 041561 72 QAISLYKDIIASGVKHDGVTFVAILTPCSH----SGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV-- 145 (156)
Q Consensus 72 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~-- 145 (156)
+|.+.|++..+.| +...+..+-..|.. .++.++|.+.|+...+. .+...+..+-..|..
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------------~~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------------GNVWSCNQLGYMYSRGL 197 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------TCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------------CCHHHHHHHHHHHhcCC
Confidence 8888888887766 34444444444544 67888888888876321 244555555555555
Q ss_pred --cCCHhHHhh
Q 041561 146 --HSNVRLAKK 154 (156)
Q Consensus 146 --~g~~~~a~~ 154 (156)
.++.++|.+
T Consensus 198 g~~~~~~~A~~ 208 (490)
T 2xm6_A 198 GVERNDAISAQ 208 (490)
T ss_dssp SSCCCHHHHHH
T ss_pred CCCcCHHHHHH
Confidence 566666654
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.21 E-value=0.16 Score=28.50 Aligned_cols=64 Identities=9% Similarity=0.119 Sum_probs=50.3
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
...+..+-..+.+.|++++|...++...+.. |+.. ..|..+-..+.+.|++++|.+.|++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~-------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNA-------------EAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCH-------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456666777889999999999999987753 3221 45667778889999999999999998764
No 191
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.17 E-value=0.21 Score=38.57 Aligned_cols=119 Identities=12% Similarity=0.118 Sum_probs=80.0
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
.|...+....+.++++.|+.+|+.. +. |.. ++...+ ..+.+.-.. .++++.|.++|+...+.-..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~~-~~~v~i---------~~A~lE~~~-~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GN---EGV-GPHVFI---------YCAFIEYYA-TGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TT---SCC-CHHHHH---------HHHHHHHHH-HCCSHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hC---CCC-ChHHHH---------HHHHHHHHH-CCChHHHHHHHHHHHHHCCC
Confidence 3555555555677899999999988 32 211 121111 122233222 33699999999998775311
Q ss_pred ccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 87 HDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
+...+...++-..+.|+.+.|+.+|+... .....|...+.--...|+.+.++++
T Consensus 353 -~~~~~~~yid~e~~~~~~~~aR~l~er~~--------------k~~~lw~~~~~fE~~~G~~~~~r~v 406 (493)
T 2uy1_A 353 -STLLKEEFFLFLLRIGDEENARALFKRLE--------------KTSRMWDSMIEYEFMVGSMELFREL 406 (493)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--------------CBHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 23345667887788999999999999882 2578899999888888998888764
No 192
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=95.17 E-value=0.098 Score=33.47 Aligned_cols=87 Identities=8% Similarity=0.104 Sum_probs=57.7
Q ss_pred HHHHhhhcc----chHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhccccc
Q 041561 46 PINIYCNCG----VTWNEMIHGYAENEY--VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDH 119 (156)
Q Consensus 46 li~~~~~~~----~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 119 (156)
-++.|+... .-|++=-..|...-+ .-+..+-++.+....+.|+.....+.+++|-|.+|+..|.++|+..+.+
T Consensus 39 ~~R~~s~h~~Et~EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K- 117 (152)
T 2y69_E 39 SLRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK- 117 (152)
T ss_dssp ----------CCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHhhcCCCCCcHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-
Confidence 345554433 334443444444443 4455566666666789999999999999999999999999999999776
Q ss_pred ccCCCcCCCCCCChhhHHHHHHH
Q 041561 120 EVKPKCLMPYKDDLVVWGDLVSS 142 (156)
Q Consensus 120 ~~~~~c~~~~~pd~~~~~~li~~ 142 (156)
+.+...+|..+++-
T Consensus 118 ---------~~~~~~iY~y~lqE 131 (152)
T 2y69_E 118 ---------AGPHKEIYPYVIQE 131 (152)
T ss_dssp ---------TTTCTTHHHHHHHH
T ss_pred ---------cCCchhhHHHHHHH
Confidence 34556678887764
No 193
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.13 E-value=0.08 Score=40.31 Aligned_cols=88 Identities=14% Similarity=-0.002 Sum_probs=67.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHC---CC---CccH-HHHHHHHHhhcCCCchHHHHHHHHhccc----ccccCCCcCCCC
Q 041561 61 IHGYAENEYVEQAISLYKDIIAS---GV---KHDG-VTFVAILTPCSHSGLVYAEVEIFNSMEH----DHEVKPKCLMPY 129 (156)
Q Consensus 61 i~~~~~~g~~~~a~~~~~~m~~~---g~---~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~c~~~~ 129 (156)
+..+.+.|++++|.+++++..+. -+ +|+. .+++.+...|...|++++|..++++... .+| +.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg-------~~ 366 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP-------GS 366 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC-------SS
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC-------CC
Confidence 55566788999999999988752 12 3333 4788899999999999999998886632 233 24
Q ss_pred CCCh-hhHHHHHHHHhhcCCHhHHhhh
Q 041561 130 KDDL-VVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 130 ~pd~-~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.|++ .+++.|=..|...|++++|+..
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~ 393 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKN 393 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 5655 6689999999999999999863
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.89 E-value=0.073 Score=31.32 Aligned_cols=58 Identities=12% Similarity=0.014 Sum_probs=47.0
Q ss_pred cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 88 DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 88 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
+...+..+-..+.+.|++++|...|+...+. -..+...|..+=.+|...|++++|.+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~~~~a~~~lg~~~~~~g~~~~A~~~ 63 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET----------DPDYVGTYYHLGKLYERLDRTDDAIDT 63 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------STTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4556777788888999999999999998543 123567899999999999999999763
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=94.75 E-value=0.23 Score=32.54 Aligned_cols=94 Identities=6% Similarity=-0.096 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-c-----c-----HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCc
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVK-H-----D-----GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKC 125 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-----~-----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c 125 (156)
+...=..+.+.|++++|.+.|++-.+-... | + ...|...-.++.+.|++++|...++.-..-+.-
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~---- 89 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR---- 89 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc----
Confidence 344455667889999999999998763211 1 2 237888888999999999999988877321000
Q ss_pred CCCCCCC-hhhH----HHHHHHHhhcCCHhHHhh
Q 041561 126 LMPYKDD-LVVW----GDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 126 ~~~~~pd-~~~~----~~li~~~~~~g~~~~a~~ 154 (156)
...+.|| ...| ...=.++...|++++|.+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~ 123 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMP 123 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence 0012564 4567 777889999999999975
No 196
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=94.68 E-value=0.15 Score=34.50 Aligned_cols=60 Identities=5% Similarity=-0.108 Sum_probs=47.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCC-cc-HHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIASGVK-HD-GVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
.+-..+.+.|++++|.+.|+++.+.... |. ...+..+-.++.+.|++++|...|+...+.
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3455678889999999999999875322 22 346777788899999999999999998554
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=94.53 E-value=0.32 Score=31.87 Aligned_cols=99 Identities=6% Similarity=-0.102 Sum_probs=69.6
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCC-CchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CCC
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYG-NDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS-----GVK 86 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~ 86 (156)
..+.+.|++++|...|+...+..-. |+....+. . ...-..|+.+-.++.+.|++++|+..|+.-.+- .+.
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~--~--~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDH--A--GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCH--H--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhh--c--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 4456789999999999998764321 11100000 0 000037888889999999999999999998763 226
Q ss_pred ccH-HHH----HHHHHhhcCCCchHHHHHHHHhc
Q 041561 87 HDG-VTF----VAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 87 p~~-~t~----~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
|+. ..| ...=.++...|++++|...|+.-
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 654 366 77778888999999999999877
No 198
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.39 E-value=0.69 Score=34.59 Aligned_cols=121 Identities=8% Similarity=0.031 Sum_probs=82.0
Q ss_pred CCcccHHHHHHHhcCC-----CchHHHHHHHHHHHHhCCCCch-HHHhHHHHHhh----hcc------------------
Q 041561 3 PTQFPFTTVLSSCAKL-----SSLFLGRQILTRIVKDGYGNDI-FVGSAPINIYC----NCG------------------ 54 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~----~~~------------------ 54 (156)
.+...|...+++.... .+..+|..+|++..+. .|+- ..|..+--+|. ...
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4567888888776532 3457788888888764 3432 33332222221 100
Q ss_pred --------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcC
Q 041561 55 --------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCL 126 (156)
Q Consensus 55 --------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~ 126 (156)
..|..+--.+...|++++|.+.+++...-+ |+...|..+=..+.-.|+.++|.+.+.+-. +
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al-r-------- 338 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF-N-------- 338 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--------
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-h--------
Confidence 455556556666799999999999998864 787777677777788999999999998773 3
Q ss_pred CCCCCChhhHHH
Q 041561 127 MPYKDDLVVWGD 138 (156)
Q Consensus 127 ~~~~pd~~~~~~ 138 (156)
+.|...||..
T Consensus 339 --L~P~~~t~~~ 348 (372)
T 3ly7_A 339 --LRPGANTLYW 348 (372)
T ss_dssp --HSCSHHHHHH
T ss_pred --cCCCcChHHH
Confidence 4677766653
No 199
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.87 E-value=0.39 Score=27.51 Aligned_cols=79 Identities=11% Similarity=0.047 Sum_probs=54.7
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccc-hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHH
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGV-TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVT 91 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 91 (156)
..+.+.|+.++|...++...+.. |+.. . .|..+-.+|...|++++|.+.|++..+..... ...
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~-------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~ 71 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE--PVGK-------------DEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS-PAL 71 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--SSTH-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS-THH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcH-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-HHH
Confidence 45567899999999999987753 4321 4 56667778889999999999999988743221 112
Q ss_pred HHHHHHhhcCCCchHHHHHHHHhc
Q 041561 92 FVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 92 ~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
+.. +.+.++...+++.
T Consensus 72 ~~~--------~~~~~a~~~~~~~ 87 (99)
T 2kc7_A 72 QAR--------KMVMDILNFYNKD 87 (99)
T ss_dssp HHH--------HHHHHHHHHHCCT
T ss_pred HHH--------HHHHHHHHHHHHH
Confidence 211 6666777777665
No 200
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=93.80 E-value=0.95 Score=30.30 Aligned_cols=118 Identities=12% Similarity=-0.058 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCC----chHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHc----CCCHHHHHHHHHH
Q 041561 8 FTTVLSSCAKLS----SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAE----NEYVEQAISLYKD 79 (156)
Q Consensus 8 ~~~ll~~~~~~~----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~ 79 (156)
+..+=..+.+ + +.++|...|+...+.| ++ ..+..|=..|.. .+++++|.+.|++
T Consensus 53 ~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~--------------~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 114 (212)
T 3rjv_A 53 LALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SK--------------SGEIVLARVLVNRQAGATDVAHAITLLQD 114 (212)
T ss_dssp HHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CH--------------HHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CH--------------HHHHHHHHHHHcCCCCccCHHHHHHHHHH
Confidence 3334444445 5 7888888888886654 23 333444444544 7899999999999
Q ss_pred HHHCCCC-ccHHHHHHHHHhhcC----CCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhc-C-----C
Q 041561 80 IIASGVK-HDGVTFVAILTPCSH----SGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVH-S-----N 148 (156)
Q Consensus 80 m~~~g~~-p~~~t~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~-g-----~ 148 (156)
-.+.|.. .+...+..|=..|.+ .++.++|...|+.-... .++...+..|=..|... | +
T Consensus 115 A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-----------~~~~~a~~~Lg~~y~~g~gg~~~~d 183 (212)
T 3rjv_A 115 AARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-----------SRTGYAEYWAGMMFQQGEKGFIEPN 183 (212)
T ss_dssp HTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-----------SCTTHHHHHHHHHHHHCBTTTBCCC
T ss_pred HHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHcCCCCCCCCC
Confidence 8876643 124555555555555 78999999999988432 12344455555555433 2 6
Q ss_pred HhHHhh
Q 041561 149 VRLAKK 154 (156)
Q Consensus 149 ~~~a~~ 154 (156)
.++|.+
T Consensus 184 ~~~A~~ 189 (212)
T 3rjv_A 184 KQKALH 189 (212)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.62 E-value=0.63 Score=29.07 Aligned_cols=76 Identities=4% Similarity=-0.145 Sum_probs=41.5
Q ss_pred CCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 041561 18 LSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILT 97 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 97 (156)
.++.++|...|....+.|- |+.. |=..|...+.+++|.+.|++-.+.| +......+=.
T Consensus 8 ~~d~~~A~~~~~~aa~~g~-~~a~------------------lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~ 65 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNE-MFGC------------------LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGD 65 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTC-TTHH------------------HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCC-Hhhh------------------HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHH
Confidence 3567888888888877762 2221 1222233344555666666665554 2333333333
Q ss_pred hhcC----CCchHHHHHHHHhc
Q 041561 98 PCSH----SGLVYAEVEIFNSM 115 (156)
Q Consensus 98 ~~~~----~~~~~~a~~~~~~m 115 (156)
.|.+ .++.++|...|+.-
T Consensus 66 ~y~~G~g~~~d~~~A~~~~~~A 87 (138)
T 1klx_A 66 FYENGKYVKKDLRKAAQYYSKA 87 (138)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHH
T ss_pred HHHcCCCCCccHHHHHHHHHHH
Confidence 3333 56666666666655
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.46 E-value=0.52 Score=26.94 Aligned_cols=57 Identities=9% Similarity=0.074 Sum_probs=45.3
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCccHH-HHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 61 IHGYAENEYVEQAISLYKDIIASGVKHDGV-TFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 61 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
-..+.+.|++++|.+.|++..+.... +.. .+..+-..+.+.|++++|...|+.....
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44567889999999999998875322 345 7777778888999999999999988443
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.29 E-value=0.29 Score=37.34 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=52.2
Q ss_pred ccHHHHHHHhcCCCchHHHHHHHHHHHH-----hC-CCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHH
Q 041561 6 FPFTTVLSSCAKLSSLFLGRQILTRIVK-----DG-YGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKD 79 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~g-~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 79 (156)
.+++.+..+|...|++++|+.++++..+ .| -.|++- .+++.|-..|...|++++|..+|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a-------------~~l~nLa~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVA-------------SMWLKLGRLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHH-------------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHH-------------HHHHHHHHHHHhccCHHHHHHHHHH
Confidence 6788999999999999999999998754 23 134442 6789999999999999999999988
Q ss_pred HH
Q 041561 80 II 81 (156)
Q Consensus 80 m~ 81 (156)
-.
T Consensus 408 Al 409 (433)
T 3qww_A 408 AI 409 (433)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 204
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=93.08 E-value=0.24 Score=35.62 Aligned_cols=81 Identities=7% Similarity=-0.090 Sum_probs=49.1
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCCh----hh
Q 041561 60 MIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDL----VV 135 (156)
Q Consensus 60 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~----~~ 135 (156)
....+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|...|+... . .||. ..
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~-----------~~d~~~~~~a 173 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAG-K-----------WPDKFLAGAA 173 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-G-----------CSCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhh-c-----------cCCcccHHHH
Confidence 5567788999999999998887644 443332223334557777777777776441 1 1111 23
Q ss_pred HHHHHHHHhhcCCHhHHhh
Q 041561 136 WGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 136 ~~~li~~~~~~g~~~~a~~ 154 (156)
+..+=.++...|++++|.+
T Consensus 174 ~~~LG~al~~LG~~~eAl~ 192 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAER 192 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHH
Confidence 4444456666666666653
No 205
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.39 E-value=1.4 Score=28.43 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=74.8
Q ss_pred CCCchHHHHHHHHHHHHhC-C-CCchHHHhHH------------------------------HHHhhhcc---chHHHHH
Q 041561 17 KLSSLFLGRQILTRIVKDG-Y-GNDIFVGSAP------------------------------INIYCNCG---VTWNEMI 61 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g-~-~~~~~~~~~l------------------------------i~~~~~~~---~~~~~li 61 (156)
-.|.+++..++..+..++. . .-|++.+|.+ +.+|++.+ ..++..+
T Consensus 19 ldG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~AL 98 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKAL 98 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHHHH
Confidence 4577888888888876543 2 3466666643 33333333 6678888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccc
Q 041561 62 HGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHE 120 (156)
Q Consensus 62 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 120 (156)
+.....|.-|+..++..++.. ...|+....-.+-.||.+.|+..++.+++.+- -+.|
T Consensus 99 d~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A-C~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA-CKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTT
T ss_pred HHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH-HHhh
Confidence 899999999999999988644 34677888888999999999999999999877 3444
No 206
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.29 E-value=0.22 Score=40.01 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=13.6
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHH
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDI 80 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m 80 (156)
..|..+-..+.+.++++.|.+.|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44555555555555555555555543
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.68 E-value=1.8 Score=28.07 Aligned_cols=81 Identities=10% Similarity=0.062 Sum_probs=55.0
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCc---cHHHH
Q 041561 19 SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENE---YVEQAISLYKDIIASGVKH---DGVTF 92 (156)
Q Consensus 19 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p---~~~t~ 92 (156)
..+..+++-|.+..+.|. ++. .+.-.+-.++++++ +++++..+|++..+.. .| -...|
T Consensus 12 ~~l~~~~~~y~~e~~~~~-~~~--------------~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY 75 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGS-VSK--------------STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVF 75 (152)
T ss_dssp HHHHHHHHHHHHHHHTTC-CCH--------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCC-CcH--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHH
Confidence 345667777776666554 444 33334455677777 6779999999998865 23 22334
Q ss_pred HHHHHhhcCCCchHHHHHHHHhcc
Q 041561 93 VAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
+.-+ ++.+.|++++|++.++...
T Consensus 76 ~LAv-~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 76 YLAV-GNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp HHHH-HHHHTSCHHHHHHHHHHHH
T ss_pred HHHH-HHHHccCHHHHHHHHHHHH
Confidence 4443 4589999999999999994
No 208
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.39 E-value=5.9 Score=31.72 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=47.0
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHH-------------HHH
Q 041561 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYK-------------DII 81 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~-------------~m~ 81 (156)
....|+++.|.++...+ .+...|..|-+.+.+.+ -+.....+|.+.|+++.+..++. ...
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~-~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRF-NFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcC-CHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 34567777777665433 45567777766666655 23444444555555544444433 333
Q ss_pred HCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 82 ASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 82 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
..| -++....++.+.|++++|.+++..+
T Consensus 735 ~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 322 1233344444566777776666665
No 209
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=90.14 E-value=4.8 Score=30.34 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHHHhCC
Q 041561 20 SLFLGRQILTRIVKDGY 36 (156)
Q Consensus 20 ~~~~a~~~~~~m~~~g~ 36 (156)
+.++|...|+...+.|.
T Consensus 89 ~~~~A~~~~~~Aa~~g~ 105 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE 105 (452)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 67788888887776553
No 210
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.95 E-value=2.3 Score=27.73 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=62.6
Q ss_pred ccHHHHHHHhcCCCch------HHHHHHHHHHHHhCCCCch-HHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHH
Q 041561 6 FPFTTVLSSCAKLSSL------FLGRQILTRIVKDGYGNDI-FVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYK 78 (156)
Q Consensus 6 ~t~~~ll~~~~~~~~~------~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 78 (156)
.+|=..+...-+.|++ +....+|+..... ++|+. ..|..-|..+ +-|..+ . ..+++++|.++|+
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LW----IrYA~~-~---ei~D~d~aR~vy~ 84 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQ----VRFAEL-K---AIQEPDDARDYFQ 84 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHH----HHHHHH-H---HHHCGGGCHHHHH
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHH----HHHHHH-H---HhcCHHHHHHHHH
Confidence 3444445555555777 7777777766553 55542 1122222222 222322 2 2389999999999
Q ss_pred HHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 79 DIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 79 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
.++..+-+. ...|...-+--.+.|+++.|++++..-.
T Consensus 85 ~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 85 MARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 997654444 6666666666678999999999999763
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=89.12 E-value=2.6 Score=27.29 Aligned_cols=75 Identities=9% Similarity=-0.120 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCC---chHHHHHHHHhcccccccCCCcCCCCCC---ChhhHHHHHHH
Q 041561 69 YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG---LVYAEVEIFNSMEHDHEVKPKCLMPYKD---DLVVWGDLVSS 142 (156)
Q Consensus 69 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~c~~~~~p---d~~~~~~li~~ 142 (156)
++..+.+-|.+-...|. ++..+-..+--++++++ +++++..+++...++ -.| -...|+.= -+
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~----------~~p~~~rd~lY~LA-v~ 80 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK----------GSKEEQRDYVFYLA-VG 80 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----------SCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----------CCccchHHHHHHHH-HH
Confidence 35566777777766665 56666666666777877 777999999998554 124 12334433 45
Q ss_pred HhhcCCHhHHhhh
Q 041561 143 CQVHSNVRLAKKA 155 (156)
Q Consensus 143 ~~~~g~~~~a~~~ 155 (156)
|.+.|++++|++.
T Consensus 81 ~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 81 NYRLKEYEKALKY 93 (152)
T ss_dssp HHHTSCHHHHHHH
T ss_pred HHHccCHHHHHHH
Confidence 5999999999874
No 212
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.72 E-value=1.7 Score=32.43 Aligned_cols=105 Identities=9% Similarity=0.051 Sum_probs=69.7
Q ss_pred CCchHHHHHHHHHHHH--hC-CCCchH--HHhHHHHHhhhcc--chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH
Q 041561 18 LSSLFLGRQILTRIVK--DG-YGNDIF--VGSAPINIYCNCG--VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV 90 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~--~g-~~~~~~--~~~~li~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 90 (156)
.|+.+.+...+..... .| +-++.. .|..-.....+.- .....++..+...|+++++......+.... .-++.
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~ 206 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREP 206 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 4666677777766654 24 333331 1211111111111 455667888889999999999888887543 34788
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHhccc----ccccCC
Q 041561 91 TFVAILTPCSHSGLVYAEVEIFNSMEH----DHEVKP 123 (156)
Q Consensus 91 t~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~ 123 (156)
.+..++.++.+.|+..+|.+.|+.... +.|+.|
T Consensus 207 ~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 207 LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999988743 467433
No 213
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=88.68 E-value=6.3 Score=29.69 Aligned_cols=28 Identities=11% Similarity=0.247 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHHCC
Q 041561 57 WNEMIHGYAENE---YVEQAISLYKDIIASG 84 (156)
Q Consensus 57 ~~~li~~~~~~g---~~~~a~~~~~~m~~~g 84 (156)
+..|-..|...| +.++|.+.|+.-.+.|
T Consensus 179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 179 YVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 333444444444 4555555555544444
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=88.65 E-value=2.3 Score=31.81 Aligned_cols=73 Identities=8% Similarity=-0.032 Sum_probs=51.8
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
++.+|..+--.+...|++++|...++.....+ |+. ..|..+=..+...|++++|.+.|++-..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~--------------~a~~llG~~~~~~G~~~eA~e~~~~Alr- 338 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSW--------------LNYVLLGKVYEMKGMNREAADAYLTAFN- 338 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCH--------------HHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 34455555445555699999999999988875 665 4444455667789999999999988766
Q ss_pred CCCccHHHHHH
Q 041561 84 GVKHDGVTFVA 94 (156)
Q Consensus 84 g~~p~~~t~~~ 94 (156)
+.|...||..
T Consensus 339 -L~P~~~t~~~ 348 (372)
T 3ly7_A 339 -LRPGANTLYW 348 (372)
T ss_dssp -HSCSHHHHHH
T ss_pred -cCCCcChHHH
Confidence 3555556544
No 215
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.39 E-value=2.7 Score=31.36 Aligned_cols=68 Identities=10% Similarity=0.098 Sum_probs=46.2
Q ss_pred HHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCC
Q 041561 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA-----SGVK 86 (156)
Q Consensus 12 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~ 86 (156)
+..+...|+.+++......+.... +-+- ..|-.+|.++.+.|+..+|.+.|+...+ -|+.
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E--------------~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~ 242 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYRE--------------PLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID 242 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCH--------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 344445555555555555543321 1122 5788899999999999999999999764 3999
Q ss_pred ccHHHHHH
Q 041561 87 HDGVTFVA 94 (156)
Q Consensus 87 p~~~t~~~ 94 (156)
|...+=..
T Consensus 243 P~~~l~~l 250 (388)
T 2ff4_A 243 PGPTLRAL 250 (388)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHHH
Confidence 98886443
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=87.92 E-value=2.6 Score=24.45 Aligned_cols=67 Identities=9% Similarity=-0.075 Sum_probs=45.0
Q ss_pred CCcccHHHHHHHhcCCC---chHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHH
Q 041561 3 PTQFPFTTVLSSCAKLS---SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKD 79 (156)
Q Consensus 3 p~~~t~~~ll~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 79 (156)
+|+..+..+-.++...+ ..++|..++++..+. .|+.. .....+=..+.+.|++++|.+.|+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~-------------rA~~~lg~~~~~~g~y~~Ai~~w~~ 68 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNE-------------AALSLIANDHFISFRFQEAIDTWVL 68 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCH-------------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCH-------------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555554333 368999999988774 34433 3344455677889999999999999
Q ss_pred HHHCC
Q 041561 80 IIASG 84 (156)
Q Consensus 80 m~~~g 84 (156)
+.+..
T Consensus 69 ~l~~~ 73 (93)
T 3bee_A 69 LLDSN 73 (93)
T ss_dssp HHTCC
T ss_pred HHhhC
Confidence 98753
No 217
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.66 E-value=3.2 Score=25.11 Aligned_cols=71 Identities=6% Similarity=0.017 Sum_probs=54.9
Q ss_pred HHhcCCC-chHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHH
Q 041561 13 SSCAKLS-SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVT 91 (156)
Q Consensus 13 ~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 91 (156)
..+-+.. |.-++.+-++.+....+.|++ ....+.+++|.+-+++.-|.++|+-.+.+ ..+...+
T Consensus 17 ~~F~~~~iD~~e~rrglN~l~~~DlVP~P--------------~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~i 81 (109)
T 1v54_E 17 TYFNKPDIDAWELRKGMNTLVGYDLVPEP--------------KIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEI 81 (109)
T ss_dssp HHHTCTTCCHHHHHHHHHHHTTSSBCCCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTH
T ss_pred HHcCCcCccHHHHHHHHHHHhccccCCCc--------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhh
Confidence 3444555 677788888999888899999 67778889999999999999999998764 2223556
Q ss_pred HHHHHHh
Q 041561 92 FVAILTP 98 (156)
Q Consensus 92 ~~~ll~~ 98 (156)
|..+++-
T Consensus 82 Y~~~lqE 88 (109)
T 1v54_E 82 YPYVIQE 88 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 218
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.45 E-value=8.9 Score=31.47 Aligned_cols=106 Identities=16% Similarity=0.089 Sum_probs=72.7
Q ss_pred HHHHHHhcCCCc-hHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-----------chH-------------------
Q 041561 9 TTVLSSCAKLSS-LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-----------VTW------------------- 57 (156)
Q Consensus 9 ~~ll~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-----------~~~------------------- 57 (156)
.++++.+...++ .+.|..+|+.+.+....-+.....++|....+.+ .+-
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445666666666 5779999999887654334444444444433332 000
Q ss_pred -----HHHHHH----HHcCCCHHHHHHHHHHHHHCCCCccHH-HHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 58 -----NEMIHG----YAENEYVEQAISLYKDIIASGVKHDGV-TFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 58 -----~~li~~----~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
..|+.. +-..|+++.|+++-++-+. ..|+.+ ||..|...|.+.|+++.|.-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 113322 3347899999999988765 567766 89999999999999999999999885
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=87.32 E-value=0.086 Score=41.25 Aligned_cols=127 Identities=11% Similarity=0.117 Sum_probs=81.4
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
|+..|.-+|.++.+.|..++....+...++..-.| ..=+.|+-+|++.+++.+..++.
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~----------------~IDteLi~ayAk~~rL~elEefl------ 139 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARES----------------YVETELIFALAKTNRLAELEEFI------ 139 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST----------------TTTHHHHHHHHTSCSSSTTTSTT------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc----------------ccHHHHHHHHHhhCcHHHHHHHH------
Confidence 44455566666666666665555555444432222 33367777888888776654443
Q ss_pred CCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCc------------CCCCCCChhhHHHHHHHHhhcCCHhH
Q 041561 84 GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKC------------LMPYKDDLVVWGDLVSSCQVHSNVRL 151 (156)
Q Consensus 84 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c------------~~~~~pd~~~~~~li~~~~~~g~~~~ 151 (156)
-.||..-...+=+=|-..|.++.|+-+|..+ ..+.-..+| ...-..++.||.-+-.+|...++++.
T Consensus 140 -~~~N~A~iq~VGDrcf~e~lYeAAKilys~i-sN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrL 217 (624)
T 3lvg_A 140 -NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRL 217 (624)
T ss_dssp -SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS-CCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTT
T ss_pred -cCCCcccHHHHHHHHHHccCHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHH
Confidence 2466666666667777777787777777777 444444443 22224588999999999999999987
Q ss_pred Hhh
Q 041561 152 AKK 154 (156)
Q Consensus 152 a~~ 154 (156)
|.-
T Consensus 218 Aqi 220 (624)
T 3lvg_A 218 AQM 220 (624)
T ss_dssp TTH
T ss_pred HHH
Confidence 753
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=85.60 E-value=3.8 Score=23.97 Aligned_cols=58 Identities=3% Similarity=-0.107 Sum_probs=46.6
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHC------CCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIAS------GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
.|=..+.+.|+++.|...|+...+. .-.+....+..+-.++.+.|+++.|...++...
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4556677899999999999887642 123456778889999999999999999999884
No 221
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=85.48 E-value=8.3 Score=27.76 Aligned_cols=93 Identities=9% Similarity=0.045 Sum_probs=62.2
Q ss_pred chHHHHHHHHHcCCC------HHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCc-hHHHHHHHHhcccccccCCCcCC
Q 041561 55 VTWNEMIHGYAENEY------VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL-VYAEVEIFNSMEHDHEVKPKCLM 127 (156)
Q Consensus 55 ~~~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~c~~ 127 (156)
..|+.--....+.+. ++++++.++++.... .-|...|+-.-..+.+.|+ .+.+..+...+......
T Consensus 181 sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~------ 253 (306)
T 3dra_A 181 SAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD------ 253 (306)
T ss_dssp HHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT------
T ss_pred HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC------
Confidence 566655555566665 788888888887754 3366677766666666665 44466677766332100
Q ss_pred CCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 128 PYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 128 ~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
-..+...+..+...|...|+.++|.++
T Consensus 254 -~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 254 -QVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp -EESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 134778888888999999999998764
No 222
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.20 E-value=5.5 Score=25.47 Aligned_cols=64 Identities=5% Similarity=0.019 Sum_probs=46.7
Q ss_pred chHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHh
Q 041561 20 SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTP 98 (156)
Q Consensus 20 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 98 (156)
|.-+..+-++.+....+.|++ ....+.+++|.+-+|+.-|.++|+-.+.+ ..+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP--------------~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEP--------------KIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCH--------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCc--------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 444555666666666677777 67788899999999999999999998764 23335577777654
No 223
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=85.02 E-value=1.3 Score=28.86 Aligned_cols=100 Identities=11% Similarity=-0.023 Sum_probs=64.7
Q ss_pred CCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCC----------CHHHHHHHHHHHHHCCCC
Q 041561 17 KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENE----------YVEQAISLYKDIIASGVK 86 (156)
Q Consensus 17 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g----------~~~~a~~~~~~m~~~g~~ 86 (156)
+.+.+++|.+.++...+.. +.+...| +.+=.++...+ .+++|...|++-.+- .
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~--------------~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--d 76 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNL--------------TRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--D 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHH--------------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--C
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHH--------------HHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--C
Confidence 4456778888888776643 1244333 32223333333 367999999998774 3
Q ss_pred c-cHHHHHHHHHhhcCC-----------CchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHh
Q 041561 87 H-DGVTFVAILTPCSHS-----------GLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQ 144 (156)
Q Consensus 87 p-~~~t~~~ll~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~ 144 (156)
| +...|..+=.+|... |++++|.+.|++-. + +.|+...|..-+...-
T Consensus 77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl-~----------l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV-D----------EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-H----------HCTTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHH-H----------hCCCCHHHHHHHHHHH
Confidence 4 345677777888765 48999999999883 3 5788777766665443
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=83.59 E-value=6.1 Score=24.68 Aligned_cols=13 Identities=15% Similarity=-0.133 Sum_probs=6.5
Q ss_pred HHhhcCCHhHHhh
Q 041561 142 SCQVHSNVRLAKK 154 (156)
Q Consensus 142 ~~~~~g~~~~a~~ 154 (156)
++.+.|++++|++
T Consensus 83 g~yklg~Y~~A~~ 95 (126)
T 1nzn_A 83 GNYRLKEYEKALK 95 (126)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHhhhHHHHHH
Confidence 4445555555544
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=81.40 E-value=9 Score=27.74 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=57.8
Q ss_pred chHHHHHHHHHc-----CCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCC-CchHHHHHHHHhcccccccCCCcCCC
Q 041561 55 VTWNEMIHGYAE-----NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS-GLVYAEVEIFNSMEHDHEVKPKCLMP 128 (156)
Q Consensus 55 ~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~~~c~~~ 128 (156)
..|..+-..|.+ .|+.++|.+.|++-.+-...-+..++...-+.+++. ++.+++.+.+++-..- +
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a---------~ 270 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI---------D 270 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC---------C
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC---------C
Confidence 567777788888 599999999999988743322366677778888885 9999999999988432 1
Q ss_pred CC--CChhhHHHHHH
Q 041561 129 YK--DDLVVWGDLVS 141 (156)
Q Consensus 129 ~~--pd~~~~~~li~ 141 (156)
.+ |+....|..-+
T Consensus 271 p~~~P~~~lan~~~q 285 (301)
T 3u64_A 271 PESVPHNKLLVILSQ 285 (301)
T ss_dssp GGGCSSCHHHHHHHH
T ss_pred CCCCCChhHHHHHHH
Confidence 23 77777776543
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=80.46 E-value=10 Score=25.21 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=34.5
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
.+.|+++.|.++-+++ -+...|..+=+...+.|+++.|.+.|...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4678888888887765 25677888888888888888888877776
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=79.51 E-value=10 Score=24.51 Aligned_cols=74 Identities=8% Similarity=-0.097 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhc
Q 041561 67 NEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVH 146 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~ 146 (156)
+|.+.....-+-. ...+...+...++.+...|.-|+-.++...+... .+|+....-.+-++|.+.
T Consensus 74 C~NlKrVi~C~~~-----~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n----------~~~~~~~l~kia~Ay~Kl 138 (172)
T 1wy6_A 74 CQNLKSVVECGVI-----NNTLNEHVNKALDILVIQGKRDKLEEIGREILKN----------NEVSASILVAIANALRRV 138 (172)
T ss_dssp CSCTHHHHHHHHH-----TTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC------------CCSCHHHHHHHHHHHHHT
T ss_pred hhcHHHHHHHHHH-----hcchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc----------CCCChHHHHHHHHHHHHh
Confidence 3444444444443 2446667888899999999999999999985233 367888888899999999
Q ss_pred CCHhHHhhh
Q 041561 147 SNVRLAKKA 155 (156)
Q Consensus 147 g~~~~a~~~ 155 (156)
|+..+|.++
T Consensus 139 g~~r~a~eL 147 (172)
T 1wy6_A 139 GDERDATTL 147 (172)
T ss_dssp TCHHHHHHH
T ss_pred cchhhHHHH
Confidence 999998764
No 228
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=76.16 E-value=2.7 Score=27.40 Aligned_cols=63 Identities=6% Similarity=0.015 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcC-----------CCHHHHHHHHHHHHHCCCCccH
Q 041561 21 LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAEN-----------EYVEQAISLYKDIIASGVKHDG 89 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~ 89 (156)
+++|...|++..+. .|+.. ..|..+=.+|... |++++|.+.|++-.+ +.|+.
T Consensus 62 ~~eAi~~le~AL~l--dP~~~-------------~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~ 124 (158)
T 1zu2_A 62 IQEAITKFEEALLI--DPKKD-------------EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHH--CTTCH-------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHh--CcCcH-------------HHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCC
Confidence 45788888877664 34332 3444455555544 589999999999877 57777
Q ss_pred HHHHHHHHhhc
Q 041561 90 VTFVAILTPCS 100 (156)
Q Consensus 90 ~t~~~ll~~~~ 100 (156)
..|...+...-
T Consensus 125 ~~y~~al~~~~ 135 (158)
T 1zu2_A 125 THYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766666543
No 229
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=73.97 E-value=6.3 Score=23.98 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=45.7
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc---------chHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041561 16 AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------VTWNEMIHGYAENEYVEQAISLYKDIIASG 84 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 84 (156)
++.|++++|++.+++-.+. +.---...+.||+.-+..+ +.=..||.+..-....++..++|+++..+|
T Consensus 33 Ak~gdfe~A~~~l~eA~~~-l~~AH~~QT~Liq~Ea~g~~~~~slLlvHAQDhLMta~~~~~la~e~I~lyk~~~~~~ 109 (109)
T 3k1s_A 33 AKQGKMAEADEAMVKAKEA-INEAHHFQTELIQSEARGEKTEISVLLIHAQDHLMNAITVKELAAEFIDLYKKLEAKG 109 (109)
T ss_dssp HHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCCCCeeehhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5789999999999887553 1122344456666655554 455667777777777778888888876543
No 230
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=72.70 E-value=6.8 Score=24.42 Aligned_cols=59 Identities=12% Similarity=0.199 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCC--chHHHHHHHHhcc
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG--LVYAEVEIFNSME 116 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~ 116 (156)
.+.+|.-|...|+.++|.+-++++.....+ ..+...++..++-+.+ ..+....++..+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~ 70 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLW 70 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 467888999999999999999998633222 3445556666666653 2455667777663
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=72.35 E-value=23 Score=25.64 Aligned_cols=77 Identities=5% Similarity=-0.063 Sum_probs=54.9
Q ss_pred ccHHHHHHHhcCC-----CchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcC-CCHHHHHHHHHH
Q 041561 6 FPFTTVLSSCAKL-----SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAEN-EYVEQAISLYKD 79 (156)
Q Consensus 6 ~t~~~ll~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~ 79 (156)
..|..+-..|.+. |+.++|++.|++..+-.-.-+. .++...-..+++. |+.+++.+.+++
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i--------------d~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP--------------DHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS--------------HHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc--------------hHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 4567777777774 9999999999999875431123 3334445566674 899999999999
Q ss_pred HHHCCCC--ccHHHHHHHH
Q 041561 80 IIASGVK--HDGVTFVAIL 96 (156)
Q Consensus 80 m~~~g~~--p~~~t~~~ll 96 (156)
-...... |+....+.+-
T Consensus 266 AL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 266 ALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHCCGGGCSSCHHHHHHH
T ss_pred HHcCCCCCCCChhHHHHHH
Confidence 9987766 7765555443
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=69.81 E-value=14 Score=21.43 Aligned_cols=70 Identities=6% Similarity=0.031 Sum_probs=51.3
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHHHHhCC------CCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY------GNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLY 77 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~------~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 77 (156)
++..+-.+=..+-+.++.+.|..-++...+.-- .+.. ..+..+-.+|.+.|++++|...+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~--------------~i~~~L~~~~~~~g~~~~A~~~~ 69 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKV--------------SVLDYLSYAVYQQGDLDKALLLT 69 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHH--------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHH--------------HHHHHHHHHHHHccCHHHHHHHH
Confidence 444555666777888999999999998765311 1122 45677888999999999999999
Q ss_pred HHHHHCCCCccH
Q 041561 78 KDIIASGVKHDG 89 (156)
Q Consensus 78 ~~m~~~g~~p~~ 89 (156)
++..+ +.|+.
T Consensus 70 ~~al~--l~P~~ 79 (104)
T 2v5f_A 70 KKLLE--LDPEH 79 (104)
T ss_dssp HHHHH--HCTTC
T ss_pred HHHHh--cCCCC
Confidence 99876 34444
No 233
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=69.18 E-value=17 Score=22.23 Aligned_cols=83 Identities=10% Similarity=-0.078 Sum_probs=56.6
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCcc
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAE----NEYVEQAISLYKDIIASGVKHD 88 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~ 88 (156)
..|...+.++.|...|+...+.| ++ ..+..|=..|.. .+++++|.+.|+.-.+.| +
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g---~~--------------~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~ 92 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELN---SG--------------NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---D 92 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTT---CH--------------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred HHHHcCCCHHHHHHHHHHHHcCC---CH--------------HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---C
Confidence 34445556677777777776654 23 333444444555 789999999999998876 3
Q ss_pred HHHHHHHHHhhcC----CCchHHHHHHHHhc
Q 041561 89 GVTFVAILTPCSH----SGLVYAEVEIFNSM 115 (156)
Q Consensus 89 ~~t~~~ll~~~~~----~~~~~~a~~~~~~m 115 (156)
......+=..|.+ .++.++|...|+.-
T Consensus 93 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 93 QDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 4445555555555 78999999999877
No 234
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=69.09 E-value=8.7 Score=24.71 Aligned_cols=58 Identities=12% Similarity=0.227 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCC--chHHHHHHHHhc
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG--LVYAEVEIFNSM 115 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~m 115 (156)
.+.+|.-|...|+.++|.+-++++.....+ ..+...++..++-+.+ ..+....++..+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L 71 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSL 71 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 467888999999999999999998643222 3445556666666542 244566667666
No 235
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=69.06 E-value=14 Score=21.22 Aligned_cols=47 Identities=6% Similarity=-0.015 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHCCCCccHH-HHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 70 VEQAISLYKDIIASGVKHDGV-TFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
.++|..+|++..+. .|+.. ....+=..+.+.|++++|...++.+...
T Consensus 25 ~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 69999999998873 44444 4444456667899999999999999544
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=68.94 E-value=18 Score=22.50 Aligned_cols=56 Identities=7% Similarity=0.157 Sum_probs=37.4
Q ss_pred HHHHHcCCCHH---HHHHHHHHHHHCCCCc-cHHHH-HHHHHhhcCCCchHHHHHHHHhccc
Q 041561 61 IHGYAENEYVE---QAISLYKDIIASGVKH-DGVTF-VAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 61 i~~~~~~g~~~---~a~~~~~~m~~~g~~p-~~~t~-~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
-.++.++...+ ++..++++..+.+ .| +..-+ -.+--++.+.|++++|++.++.+.+
T Consensus 42 Aw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 42 AWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34556676654 4889999987764 23 22222 2233466799999999999999843
No 237
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.16 E-value=17 Score=21.95 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHH
Q 041561 70 VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLV 140 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li 140 (156)
.++|.-+-+-+...|. .+..-.+=+..+...|++++|.++.+.+ +-||...|-+|-
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-------------c~pdlepw~ALc 78 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-------------AYPDLEPWLALC 78 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-------------CCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-------------CCchHHHHHHHH
Confidence 4566666665555443 2222223334555777787777777766 467777776663
No 238
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=66.90 E-value=17 Score=21.99 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHH
Q 041561 70 VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDL 139 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~l 139 (156)
.++|.-+-+-+...|. .+..-.+=+..+...|++++|.++.+.+ +-||...|-++
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-------------c~pdlepw~AL 76 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-------------PWPALEPWFAL 76 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-------------CCGGGHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-------------CCchHHHHHHH
Confidence 4555555555554443 2222222234455667777776666655 45666666665
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=66.46 E-value=12 Score=24.35 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=55.2
Q ss_pred chHHHHHHHHHcCCCH------HHHHHHHHHHHHCCCCccHH------HHH----HHHHhhcCCCchHHHHHHHHhcccc
Q 041561 55 VTWNEMIHGYAENEYV------EQAISLYKDIIASGVKHDGV------TFV----AILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~------t~~----~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
.+|-..+.-.-+.|++ ++..++|++-..+ +.|+.. .|- +++.. .+|+++|+++|+.+...
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~e---i~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKA---IQEPDDARDYFQMARAN 89 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHH---HHCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHH
Confidence 4555555555556777 7777777766542 444431 111 12222 38999999999999544
Q ss_pred cccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 119 HEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 119 ~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
+. .+ ...|...=+=-.+.|++.+|+++
T Consensus 90 hK-------kF---AKiwi~~AqFEiRqgnl~kARkI 116 (161)
T 4h7y_A 90 CK-------KF---AFVHISFAQFELSQGNVKKSKQL 116 (161)
T ss_dssp CT-------TB---HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hH-------HH---HHHHHHHHHHHHHcccHHHHHHH
Confidence 22 13 67777777777888999988875
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=65.34 E-value=27 Score=23.12 Aligned_cols=34 Identities=15% Similarity=0.044 Sum_probs=18.9
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
....|+++.|.++.+.+ -+...|..|=+..-+.|
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~g 48 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQG 48 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcC
Confidence 34567777777776554 34555555544444443
No 241
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=61.29 E-value=57 Score=25.52 Aligned_cols=99 Identities=7% Similarity=0.020 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCccHHHHHHHHHh
Q 041561 21 LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENE--YVEQAISLYKDIIASGVKHDGVTFVAILTP 98 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 98 (156)
++++...++.+.+.. |..+ ..|+.=-..+.+.+ +++++++.++.+.+.... |...|+.--..
T Consensus 89 ~~~eL~~~~~~l~~~--pK~y-------------~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~ 152 (567)
T 1dce_A 89 VKAELGFLESCLRVN--PKSY-------------GTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFV 152 (567)
T ss_dssp HHHHHHHHHHHHHHC--TTCH-------------HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCH-------------HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHH
Confidence 677777777776532 3222 56766666677788 679999999999886533 56667766566
Q ss_pred hcCCC-chHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhh
Q 041561 99 CSHSG-LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQV 145 (156)
Q Consensus 99 ~~~~~-~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~ 145 (156)
+.+.| ..+++.+.++.+.+. -.-|...|+-.-..+.+
T Consensus 153 l~~l~~~~~~el~~~~~~I~~----------~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 153 AAQAAVAPAEELAFTDSLITR----------NFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHTCCCHHHHHHHHHTTTTT----------TCCCHHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHH----------CCCCccHHHHHHHHHHh
Confidence 66677 889999999988543 13466777776666555
No 242
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=60.33 E-value=26 Score=27.80 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=45.6
Q ss_pred chHHHHHHHHHcC--CCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCC
Q 041561 55 VTWNEMIHGYAEN--EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDD 132 (156)
Q Consensus 55 ~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd 132 (156)
..|..-|..+..+ .+.........++..+=.--+..-...++..|++.|-.+.|+.+...+-.+ ..-+
T Consensus 480 sLW~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k----------~l~~ 549 (570)
T 3f3f_C 480 ELWPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQ----------MLSA 549 (570)
T ss_dssp TTHHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC---------------
T ss_pred cchhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH----------HHHC
Confidence 5677666666653 344556666666665533345557888999999999999999999999444 3456
Q ss_pred hhhHHHHHHHHhhcCCHhHHh
Q 041561 133 LVVWGDLVSSCQVHSNVRLAK 153 (156)
Q Consensus 133 ~~~~~~li~~~~~~g~~~~a~ 153 (156)
...| .-+..|++.|++++.+
T Consensus 550 g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 550 HNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp ---------------------
T ss_pred ccHH-HHHHHHHHcCChhhcc
Confidence 6777 5567789999988764
No 243
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=59.17 E-value=31 Score=21.81 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=43.9
Q ss_pred HHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchH
Q 041561 27 ILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106 (156)
Q Consensus 27 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 106 (156)
+-+.+.+.|++++..- -.++..+...+.+-.|.++++.+++.+...+..|.--.|+.+...|-+.
T Consensus 14 ~~~~l~~~g~r~T~qR---------------~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQR---------------EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHCC--CHHHH---------------HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCHHH---------------HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3445677887766532 3445556666667788999999988877777777777778777777543
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.28 E-value=58 Score=24.64 Aligned_cols=143 Identities=9% Similarity=-0.022 Sum_probs=88.3
Q ss_pred cHHHHHHHhcCCCchHHHHHHHHHHH-HhCCCCchHHH--hHHHHHhhhcc-----------------------------
Q 041561 7 PFTTVLSSCAKLSSLFLGRQILTRIV-KDGYGNDIFVG--SAPINIYCNCG----------------------------- 54 (156)
Q Consensus 7 t~~~ll~~~~~~~~~~~a~~~~~~m~-~~g~~~~~~~~--~~li~~~~~~~----------------------------- 54 (156)
....++..|...++++.....+..+. ++|..+...+. +.++.......
T Consensus 58 ~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~era 137 (445)
T 4b4t_P 58 VLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERA 137 (445)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 35567778888888887776666653 34543333221 11222221111
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCcc---HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIAS--GVKHD---GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPY 129 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~ 129 (156)
.....|...|-..|++.+|.+++.++... |.... ...+...++.|...+|+..|..+......... +.+.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~-----~~~~ 212 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTF-----KNPK 212 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HSSC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhc-----ccCC
Confidence 22356788889999999999999998642 33322 23566778889999999999999887632211 0012
Q ss_pred CCCh--hhHHHHHHHHhhcCCHhHHhh
Q 041561 130 KDDL--VVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 130 ~pd~--~~~~~li~~~~~~g~~~~a~~ 154 (156)
.|+. ..|..++..+...+++.+|.+
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~ 239 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKREYLEVAQ 239 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2332 456777777777777776643
No 245
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=58.22 E-value=16 Score=22.57 Aligned_cols=48 Identities=19% Similarity=0.113 Sum_probs=36.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchH
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 106 (156)
.+++.+...+..-.|.++++.+++.+...+..|.--.|+.+...|-+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 356666666667788999999988887778888777788888877553
No 246
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=56.67 E-value=35 Score=22.15 Aligned_cols=58 Identities=12% Similarity=0.208 Sum_probs=35.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCC-chHHHHHHHHhc
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG-LVYAEVEIFNSM 115 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m 115 (156)
..++|.-|...++.++|..-++++......|. +.-..+-.++-+.. .-+.+..++..+
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~~-~V~~~I~~aldrk~~ere~~s~LL~~L 71 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSG-VPVLAVSLALEGKASHREMTSKLLSDL 71 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCSGGGGH-HHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcccHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999874443332 22223333443332 233455666665
No 247
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=55.81 E-value=35 Score=21.37 Aligned_cols=64 Identities=17% Similarity=0.084 Sum_probs=45.4
Q ss_pred HHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchH
Q 041561 28 LTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106 (156)
Q Consensus 28 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 106 (156)
-+.+.+.|++++..- -.++..+...+..-.|.++++.+++.+...+..|.--.|+.+...|-+.
T Consensus 10 ~~~l~~~g~r~T~qR---------------~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 10 LETLKETGVRITPQR---------------HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHTTCCCCHHH---------------HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHH---------------HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 345677888766532 3345555566667778999999988887777888777788887777553
No 248
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=53.91 E-value=24 Score=21.98 Aligned_cols=45 Identities=7% Similarity=0.122 Sum_probs=29.6
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
.+++.+...+..-.|.++++.+.+.+...+..|--.-|+.+.+.|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 467777777778889999999988776555543333334444444
No 249
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=53.84 E-value=14 Score=23.11 Aligned_cols=48 Identities=19% Similarity=0.068 Sum_probs=36.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchH
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 106 (156)
.+++.+...+..-.|.++++.+.+.+...+..|.--.|+.+...|-+.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 456666666667778999999988887888888777788887777553
No 250
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=53.47 E-value=7.6 Score=20.80 Aligned_cols=46 Identities=11% Similarity=0.129 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHhh-cCCC------c-hHHHHHHHHhc
Q 041561 70 VEQAISLYKDIIASGVKHDGVTFVAILTPC-SHSG------L-VYAEVEIFNSM 115 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~------~-~~~a~~~~~~m 115 (156)
.++|.+.|.+|.+..-.+..-||...++.+ ++-. + +.+=.++|+..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 368899999998765556678999999988 5433 2 44444555543
No 251
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=52.65 E-value=38 Score=20.78 Aligned_cols=64 Identities=11% Similarity=-0.008 Sum_probs=40.9
Q ss_pred chHHHHHHHHHcCCC---HHHHH----HHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 55 VTWNEMIHGYAENEY---VEQAI----SLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 55 ~~~~~li~~~~~~g~---~~~a~----~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
.+++.++..|...-. ++++. -+|+.+....+.|+...--.-|-.+...++++.|.+++..+...
T Consensus 20 ~~l~~~l~~~~~~~~k~~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 20 RPLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 345556665443221 33333 46777777788777665444455556889999999999888543
No 252
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.79 E-value=53 Score=22.24 Aligned_cols=59 Identities=8% Similarity=0.137 Sum_probs=42.8
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH
Q 041561 19 SSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV 90 (156)
Q Consensus 19 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 90 (156)
++...+..+|..|...|+..... .-|-.--..+-..|++++|.++|+.=.+++-.|-..
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~A-------------lfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLS-------------LFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred cccCCHHHHHHHHHHCCCcHHHH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 33568888999998888754432 334445555667899999999999988888787543
No 253
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=51.25 E-value=46 Score=21.39 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccH
Q 041561 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDG 89 (156)
Q Consensus 24 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 89 (156)
+..+|..|...|+..... .-|-.--..+-..|++++|.++|+.=.+++-.|-.
T Consensus 84 p~~if~~L~~~~IG~~~A-------------lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSS-------------PLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp HHHHHHHHHTTTTTTTBH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCCcHHHH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 556666666655533221 23444445556778889999999888777777744
No 254
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=51.15 E-value=46 Score=21.36 Aligned_cols=70 Identities=11% Similarity=0.038 Sum_probs=48.0
Q ss_pred HHHHHHHH-HHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCccHHHHHHHHHh
Q 041561 22 FLGRQILT-RIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIAS--GVKHDGVTFVAILTP 98 (156)
Q Consensus 22 ~~a~~~~~-~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~ 98 (156)
+.+.+-+. .+.+.|++++.. =-.+++.+...+..-.|.++++.+.+. +...+..|.---|+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q---------------R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~ 78 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ---------------REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNL 78 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH---------------HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHH---------------HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Confidence 44444444 457788877652 234566666777777889999999887 777777777777777
Q ss_pred hcCCCchH
Q 041561 99 CSHSGLVY 106 (156)
Q Consensus 99 ~~~~~~~~ 106 (156)
+...|-+.
T Consensus 79 L~e~Glv~ 86 (162)
T 4ets_A 79 LEEAEMVT 86 (162)
T ss_dssp HHHTTSEE
T ss_pred HHHCCCEE
Confidence 77777543
No 255
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=50.18 E-value=34 Score=19.58 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=31.5
Q ss_pred cCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHH
Q 041561 66 ENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111 (156)
Q Consensus 66 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 111 (156)
.....++|.++++.+..+| ...|..+++++.+.+....|..+
T Consensus 48 ~~t~~~kar~Lld~l~~kG----~~af~~F~~aL~~~~~~~La~~L 89 (94)
T 2p1h_A 48 EPTQQQRAAMLIKMILKKD----NDSYVSFYNALLHEGYKDLAALL 89 (94)
T ss_dssp SSSHHHHHHHHHHHHTTSC----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHcC----HHHHHHHHHHHHHcCHHHHHHHH
Confidence 4567899999999997766 67888889998777665444433
No 256
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=49.34 E-value=28 Score=25.80 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=44.1
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCC--chHHHHHHHHhcc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG--LVYAEVEIFNSME 116 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~ 116 (156)
...+.+|.=|...|+.++|.+.++++....+++ .+...++..++-+.+ ..+...+++..+.
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~ 280 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLW 280 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 456889999999999999999999997544333 445666666766653 3455677777773
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=48.85 E-value=41 Score=21.48 Aligned_cols=53 Identities=9% Similarity=0.162 Sum_probs=35.7
Q ss_pred HHHcCCC---HHHHHHHHHHHHHCCCC-ccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 63 GYAENEY---VEQAISLYKDIIASGVK-HDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 63 ~~~~~g~---~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
++.++.. ..++..+++++.+.+.. .-...|- +--++.+.|++++|++..+.+.
T Consensus 48 ~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYy-LAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 48 GLIKSTDVNDERLGVKILTDIYKEAESRRRECLYY-LTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHH-HHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHH-HHHHHHHhhhHHHHHHHHHHHH
Confidence 4445554 56788899998875432 2222332 3346679999999999999883
No 258
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=48.67 E-value=38 Score=19.71 Aligned_cols=38 Identities=11% Similarity=-0.012 Sum_probs=21.7
Q ss_pred CchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHh
Q 041561 103 GLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAK 153 (156)
Q Consensus 103 ~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~ 153 (156)
...+.++++++.+. +.+...|..++.+....|+...|.
T Consensus 51 t~~~~ar~Lld~L~-------------~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLE-------------TRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHT-------------TSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHH-------------HcChHHHHHHHHHHHHcCcHHHHH
Confidence 45666666666662 234556666666665555555543
No 259
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=48.50 E-value=12 Score=25.79 Aligned_cols=92 Identities=10% Similarity=0.191 Sum_probs=52.1
Q ss_pred chHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCccHHHHHHHH---HhhcC----------------CCchHHHHHHHH
Q 041561 55 VTWNEMIHGYAENE--YVEQAISLYKDIIASGVKHDGVTFVAIL---TPCSH----------------SGLVYAEVEIFN 113 (156)
Q Consensus 55 ~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~ll---~~~~~----------------~~~~~~a~~~~~ 113 (156)
..|.++..+|.... ++.+-.++++-+...++.-+... -..+ +.++| ..-++.|..+++
T Consensus 18 fyf~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~~~~~-~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~ 96 (235)
T 3bu8_A 18 FYFHEALRAFRGSRYGDFRQIRDIMQALLVRPLGKEHTV-SRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLE 96 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCCCHHH-HHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhCcccccccc-hhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHH
Confidence 44566666665432 35556666666665666655443 2222 22222 224677888888
Q ss_pred hcccccccCCCcCCCCCCCh------hhHHHHHHHHhhcCCHhHHhhh
Q 041561 114 SMEHDHEVKPKCLMPYKDDL------VVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 114 ~m~~~~~~~~~c~~~~~pd~------~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.+.++.. +..+. ..=...+..|.++|.+++|.++
T Consensus 97 ~I~~e~~--------l~~~l~e~i~~llk~qAV~VCiek~~f~kA~ei 136 (235)
T 3bu8_A 97 MIKTEFT--------LTEAVVESSRKLVKEAAVIICIKNKEFEKASKI 136 (235)
T ss_dssp HHHHHTT--------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhc--------CcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 8866532 11111 1122456789999999999875
No 260
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=48.23 E-value=29 Score=20.86 Aligned_cols=65 Identities=8% Similarity=-0.008 Sum_probs=40.7
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc---------chHHHHHHHHHcCCCHHHHHHHHHHH
Q 041561 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------VTWNEMIHGYAENEYVEQAISLYKDI 80 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---------~~~~~li~~~~~~g~~~~a~~~~~~m 80 (156)
.++.|++++|++.+++-.+. +.---..-+.||+.-+.++ +.=..||.+..-....++..++|+++
T Consensus 30 ~Ak~g~fe~A~~~l~eA~~~-l~~AH~~Qt~liq~Ea~g~~~~~slLlvHAQDhLMta~~~~~la~e~I~lyk~~ 103 (105)
T 2e2a_A 30 AAENGDFAKADSLVVEAGSC-IAEAHSSQTGMLAREASGEELPYSVTMMHGQLHLMTTILLKDVIHHLIELYKRG 103 (105)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCCcceeehhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36889999999999887653 1222344556666666554 34455666666655556666666654
No 261
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=47.96 E-value=55 Score=21.32 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHH
Q 041561 24 GRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVT 91 (156)
Q Consensus 24 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 91 (156)
...+|..|...|+..... .-|-.--..+-..|++.+|.++|..=.+++..|-...
T Consensus 79 p~~if~~L~~~~IG~~~A-------------lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLA-------------QFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp HHHHHHHHHHTTSSTTBH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred HHHHHHHHHHCCcchhhH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 455666666555533221 2233334445567889999999988888887776553
No 262
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.70 E-value=20 Score=22.22 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=43.0
Q ss_pred HHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchH
Q 041561 30 RIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENE-YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106 (156)
Q Consensus 30 ~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 106 (156)
.+.+.|++++..- -.++..+...+ ..-.|.++++.+++.+...+..|.---|+.+...|-+.
T Consensus 8 ~l~~~g~r~T~qR---------------~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPR---------------VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHH---------------HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHH---------------HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4667787666532 34455666665 66778999999998887777887777777777777543
No 263
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=47.30 E-value=26 Score=21.53 Aligned_cols=45 Identities=7% Similarity=0.118 Sum_probs=29.3
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
.+++.+...+..-.|.++++.+.+.+...+..|--.-|+.+.+.|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 456666666677889999999988765555544444444555554
No 264
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.82 E-value=11 Score=27.46 Aligned_cols=59 Identities=7% Similarity=0.044 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCC-chHHHHHHHHhcc
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG-LVYAEVEIFNSME 116 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~ 116 (156)
-+.++.=|...|+.++|.+-++++.....+ ..+...++..++-+.. .-+.+..++..+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~ 73 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLL 73 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 467888899999999999999988643332 2344555555555432 3344556666663
No 265
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=46.63 E-value=31 Score=28.34 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=42.8
Q ss_pred HhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHH
Q 041561 14 SCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDI 80 (156)
Q Consensus 14 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 80 (156)
.|...|+.+.|+++-.+.... .|+.+ .+|-.|..+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~--aPseF-------------~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL--ALDSF-------------ESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CSSCH-------------HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhc--Cchhh-------------HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 355678888888888887653 56665 89999999999999999999988887
No 266
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=46.38 E-value=89 Score=23.28 Aligned_cols=76 Identities=7% Similarity=-0.057 Sum_probs=46.5
Q ss_pred HHHHHhcCCCc---hHHHHHHHHHHHHhC----CCCchH------------HHhHHHHHhhhcc--chHHHHHHHHHcCC
Q 041561 10 TVLSSCAKLSS---LFLGRQILTRIVKDG----YGNDIF------------VGSAPINIYCNCG--VTWNEMIHGYAENE 68 (156)
Q Consensus 10 ~ll~~~~~~~~---~~~a~~~~~~m~~~g----~~~~~~------------~~~~li~~~~~~~--~~~~~li~~~~~~g 68 (156)
.++...+..|+ .+.|.++|+...+.+ ++||.. .|+.+++.|-+.. .-=+.++.+++...
T Consensus 202 ~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~~~~~~~~l~~~y~~s~~~~ek~~ll~aL~~s~ 281 (419)
T 3rjo_A 202 QLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQSTEGWDFLYSKYQFSLSSTEKSQIEFALCRTQ 281 (419)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTTSHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeCCHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCC
Confidence 45566666665 567888888876542 556642 2344444443333 22456777777778
Q ss_pred CHHHHHHHHHHHHHCCC
Q 041561 69 YVEQAISLYKDIIASGV 85 (156)
Q Consensus 69 ~~~~a~~~~~~m~~~g~ 85 (156)
+++...++++......+
T Consensus 282 d~~ll~~~L~~~l~~~~ 298 (419)
T 3rjo_A 282 NKEKLQWLLDESFKGDK 298 (419)
T ss_dssp CHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHhCCCC
Confidence 88777777777665543
No 267
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.56 E-value=31 Score=24.89 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=42.7
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCc--hHHHHHHHHhcc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL--VYAEVEIFNSME 116 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~m~ 116 (156)
...+.+|.=|...|+.++|.+.++++.....+| .+...++..++-+.++ .+...+++..+.
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~ 229 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLW 229 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHH
Confidence 445789999999999999999999996433332 4455566666666532 455667777773
No 268
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=45.33 E-value=24 Score=18.70 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHCC-CCccH
Q 041561 67 NEYVEQAISLYKDIIASG-VKHDG 89 (156)
Q Consensus 67 ~g~~~~a~~~~~~m~~~g-~~p~~ 89 (156)
.-+++.|...|.++...| +.|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 448999999999998765 44443
No 269
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=45.19 E-value=33 Score=21.17 Aligned_cols=45 Identities=7% Similarity=0.117 Sum_probs=27.9
Q ss_pred HHHHHhcCCC-chHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 10 TVLSSCAKLS-SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 10 ~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
.+++.+...+ ..-.|.++++.+.+.+...+..|--.-|+.+.+.|
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4566666666 67789999999988765555544333344444444
No 270
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=43.50 E-value=34 Score=22.50 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=21.0
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHhCCCCc
Q 041561 11 VLSSCAKLSSLFLGRQILTRIVKDGYGND 39 (156)
Q Consensus 11 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~ 39 (156)
.|...++.|+.+.++.+++.+.+.|..++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 44555677888888888888877776544
No 271
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=43.27 E-value=1.2e+02 Score=23.75 Aligned_cols=74 Identities=9% Similarity=-0.027 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCC--chHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcC
Q 041561 70 VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSG--LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHS 147 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g 147 (156)
++++++.++.+.+...+ +..+|+.=--.+.+.+ +++++.+.++.+.+. -..|-..|+----...+.|
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~----------d~~N~~aW~~R~~~l~~l~ 157 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEA----------DERNFHCWDYRRFVAAQAA 157 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh----------ccccccHHHHHHHHHHHcC
Confidence 89999999999875432 4456665555556677 679999999999554 2457788887777777777
Q ss_pred -CHhHHhh
Q 041561 148 -NVRLAKK 154 (156)
Q Consensus 148 -~~~~a~~ 154 (156)
..+++.+
T Consensus 158 ~~~~~el~ 165 (567)
T 1dce_A 158 VAPAEELA 165 (567)
T ss_dssp CCHHHHHH
T ss_pred CChHHHHH
Confidence 6666654
No 272
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=43.03 E-value=89 Score=22.30 Aligned_cols=112 Identities=10% Similarity=0.014 Sum_probs=69.6
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCccHHHHH
Q 041561 16 AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENE--YVEQAISLYKDIIASGVKHDGVTFV 93 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~ 93 (156)
.+....++|..+.+.+.+. .|+.. ..||.==..+...| +++++++.++.+.....+ +...|+
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~-------------taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~ 107 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHY-------------TIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWN 107 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCH-------------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHH-------------HHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHH
Confidence 3444456777777777653 24332 44555555556667 899999999999874322 222333
Q ss_pred H---HH----HhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHh--HHh
Q 041561 94 A---IL----TPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVR--LAK 153 (156)
Q Consensus 94 ~---ll----~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~--~a~ 153 (156)
. ++ ......++++++..+++.+... -..|-..|+.---...+.|+.+ ++.
T Consensus 108 ~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~----------~pkny~aW~~R~~vl~~l~~~~~~~EL 166 (306)
T 3dra_A 108 YRQLIIGQIMELNNNDFDPYREFDILEAMLSS----------DPKNHHVWSYRKWLVDTFDLHNDAKEL 166 (306)
T ss_dssp HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH----------CTTCHHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhcccChHHHH
Confidence 3 22 2222227899999999999554 2447777777666666677665 544
No 273
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=42.32 E-value=71 Score=21.59 Aligned_cols=63 Identities=11% Similarity=-0.065 Sum_probs=46.1
Q ss_pred HHHHHhc---CCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-------chHHHHHHHHHcCCCHHH
Q 041561 10 TVLSSCA---KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------VTWNEMIHGYAENEYVEQ 72 (156)
Q Consensus 10 ~ll~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-------~~~~~li~~~~~~g~~~~ 72 (156)
-+|+++. |-.|++.|.--+..|.+.|-.|....-..++-+.-.-| ..-++...++-+-|.++.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 81 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEG 81 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHH
Confidence 3555554 55899999999999999998888877777777777777 444555666666666654
No 274
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=42.13 E-value=41 Score=21.21 Aligned_cols=45 Identities=9% Similarity=0.158 Sum_probs=24.3
Q ss_pred HHHHHhcCCC-chHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 10 TVLSSCAKLS-SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 10 ~ll~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
.++..+...+ ..-.|.++++.+.+.+...+..|--.-|+.+...|
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3455555555 56667777777776654444433333333444443
No 275
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=42.06 E-value=36 Score=21.52 Aligned_cols=45 Identities=13% Similarity=0.031 Sum_probs=23.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
.+++.+...+..-.|.++++.+.+.+...+..|--.-|+.+...|
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 345555555556677777777776654444433333333333333
No 276
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=41.86 E-value=37 Score=20.30 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=39.1
Q ss_pred hcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc---------chHHHHHHHHHcCCCHHHHHHHHHHH
Q 041561 15 CAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------VTWNEMIHGYAENEYVEQAISLYKDI 80 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---------~~~~~li~~~~~~g~~~~a~~~~~~m 80 (156)
.++.|++++|++.+++-.+. +.---..-+.||+.-+..+ +.=..||.+..-....++..++|+++
T Consensus 28 ~Ak~g~fe~A~~~l~eA~~~-l~~AH~~Qt~liq~Ea~g~~~~~slLlvHAQDhLMta~~~~~la~e~I~lyk~~ 101 (103)
T 1wcr_A 28 QAKQGDFAAAKAMMDQSRMA-LNEAHLVQTKLIEGDAGEGKMKVSLVLVHAQLHLMTSMLARELITELIELHEKL 101 (103)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCSSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCCCcceeehhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36889999999999887653 1122234445555555444 34455666666655556666666653
No 277
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=41.85 E-value=32 Score=21.66 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 69 YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 69 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
+..++..+++++.+.+..-...-.--+--++.+.|+++.|++..+.+.
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 466889999998876521112223334456679999999999999883
No 278
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=41.00 E-value=86 Score=21.57 Aligned_cols=92 Identities=12% Similarity=0.034 Sum_probs=48.4
Q ss_pred HHHHhcCCCchHHHHHHHHHHHH--hCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc
Q 041561 11 VLSSCAKLSSLFLGRQILTRIVK--DGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD 88 (156)
Q Consensus 11 ll~~~~~~~~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 88 (156)
-|+.+....++++|..+.+...+ .+.++....-+ ..-...++.-.....-.-+..+.+++.. .++
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~----------~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~ 90 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEE----------LMLLNLISLKIEQRREAISSKLSQSILS---SNE 90 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSS
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCC
Confidence 46777888999999999998765 23332110000 1111122222222222333344444422 444
Q ss_pred HHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 89 GVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 89 ~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
...-...+..+.+.|+.++|.++|-+.
T Consensus 91 ~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 91 IVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 555556667777778888888776554
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.92 E-value=86 Score=21.57 Aligned_cols=84 Identities=10% Similarity=0.009 Sum_probs=51.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHH--CCCCc----cHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCCh
Q 041561 60 MIHGYAENEYVEQAISLYKDIIA--SGVKH----DGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDL 133 (156)
Q Consensus 60 li~~~~~~g~~~~a~~~~~~m~~--~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~ 133 (156)
-++.+....++++|.++.++.++ .+..+ +.......++.=.....-..+..+.+.+ .. .++.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~-----------~~~~ 91 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS-----------SNEI 91 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT-----------CSSH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-----------cCCH
Confidence 37788899999999999998764 23332 1122233333333333334444555555 22 3456
Q ss_pred hhHHHHHHHHhhcCCHhHHhhh
Q 041561 134 VVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 134 ~~~~~li~~~~~~g~~~~a~~~ 155 (156)
..-...+....+.|+.++|.++
T Consensus 92 ~~~r~~v~~L~rLg~~~~A~~l 113 (235)
T 2d2s_A 92 VHLKSGTENMIKLGLPEQALDL 113 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCChhHHHHH
Confidence 6677778888899999999764
No 280
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=39.95 E-value=2.2 Score=24.81 Aligned_cols=23 Identities=17% Similarity=0.020 Sum_probs=16.7
Q ss_pred HHhCCCCchHHHhHHHHHhhhcc
Q 041561 32 VKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 32 ~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
++..+..+..+|..+|++|++.|
T Consensus 26 ~QYeL~k~~avyRvFiNgYAk~g 48 (96)
T 2f40_A 26 VQYELSTRDEFYRVFINPYAKVA 48 (96)
T ss_dssp HHHTTTTTTTBCCCCCCTTTTCC
T ss_pred HHHHhhcchhhhhheeccccccc
Confidence 45666677777777777777777
No 281
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=39.83 E-value=41 Score=24.32 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=36.6
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 75 SLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 75 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
++++.+.+.|+.|..+++..++..+++.=.++.+.++++.+..
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~ 256 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCR 256 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 3566677889999999999999999988889999999998843
No 282
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=39.82 E-value=60 Score=23.11 Aligned_cols=48 Identities=8% Similarity=0.116 Sum_probs=36.4
Q ss_pred HhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 97 TPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 97 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
....+.|+++++..-...-.+. -.-|...=..+++-+|-.|++++|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~----------~P~da~~R~~LfqLLcv~G~w~RA~~ 52 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA----------SPKDASLRSSFIELLCIDGDFERADE 52 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT----------CTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh----------CCcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 4456789999988877766454 13466667778999999999999874
No 283
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=39.69 E-value=20 Score=18.49 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHh
Q 041561 68 EYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNS 114 (156)
Q Consensus 68 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 114 (156)
.|+..|.++++.++++|-.|....- -++---++.-....+++++.
T Consensus 7 RDv~RaiELle~lq~sgevp~~KL~--aLq~VLqSdF~~aVREVYEh 51 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNAKLA--SLQQVLQSEFFGAVREVYET 51 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHHHHH--HHHHHHSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999987766532 12222244444445555543
No 284
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=39.62 E-value=47 Score=18.18 Aligned_cols=16 Identities=6% Similarity=0.256 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHCCC
Q 041561 70 VEQAISLYKDIIASGV 85 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~ 85 (156)
..-+.+.++.|.+.|+
T Consensus 52 ~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 52 LATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred HhhHHHHHHHHHHCCC
Confidence 3445555555555553
No 285
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=39.26 E-value=61 Score=21.97 Aligned_cols=62 Identities=16% Similarity=0.100 Sum_probs=42.0
Q ss_pred HHHHHHhc---CCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-------chHHHHHHHHHcCCCHH
Q 041561 9 TTVLSSCA---KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------VTWNEMIHGYAENEYVE 71 (156)
Q Consensus 9 ~~ll~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-------~~~~~li~~~~~~g~~~ 71 (156)
--+|+++. |-.|++.|.--+..|.+.| .|....-..++-+.-.-| ..-++...++-+-|.+|
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 34556654 5589999999999999999 777666666666666666 33444555555555554
No 286
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=39.19 E-value=26 Score=22.18 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=43.7
Q ss_pred HHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchH
Q 041561 29 TRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENE-YVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVY 106 (156)
Q Consensus 29 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 106 (156)
+.|.+.|++++..- -.++..+...+ ..-.|.++++.+.+.+...+..|.---|+.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR---------------~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPR---------------LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHH---------------HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH---------------HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 44667787766532 23455555555 56678999999988887778888777788887777553
No 287
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.92 E-value=83 Score=21.62 Aligned_cols=53 Identities=9% Similarity=0.114 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcc
Q 041561 23 LGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHD 88 (156)
Q Consensus 23 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 88 (156)
....+|..|...|+..... .-|-.--..+-..|++.+|.++|+.=.+++-.|-
T Consensus 132 ~p~~if~~L~~~~IG~~~A-------------lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESS-------------IFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBH-------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CHHHHHHHHHHCCcchhHH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4555666665555533221 3344444555677889999999988777777763
No 288
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=38.81 E-value=1.8e+02 Score=24.95 Aligned_cols=127 Identities=9% Similarity=-0.070 Sum_probs=77.5
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCch------HHHhHHHHHhhhcc---chHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDI------FVGSAPINIYCNCG---VTWNEMIHGYAENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~------~~~~~li~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 83 (156)
.++...|++++|.+.|.... .|+..+. ..+..+........ .-|..++.-|-+.+.++.+.++-..-.+.
T Consensus 850 ~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~ 928 (1139)
T 4fhn_B 850 LIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 928 (1139)
T ss_dssp HHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHh-hhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34557899999999997642 2222211 12222222222111 34788888999999999888776655442
Q ss_pred -CCCcc---HHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhH
Q 041561 84 -GVKHD---GVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRL 151 (156)
Q Consensus 84 -g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~ 151 (156)
+-.++ ...|..+++++...+++++|-..+..+... . . =......+|...+..|..++
T Consensus 929 ~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~--------~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 929 KETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-P--------L--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-S--------S--CHHHHHHHHHHHHHHCCHHH
T ss_pred ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-H--------H--HHHHHHHHHHHHHhCCChhh
Confidence 22222 125888999999999999998888777422 1 1 23445556666666665543
No 289
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.56 E-value=35 Score=21.39 Aligned_cols=30 Identities=7% Similarity=-0.066 Sum_probs=17.2
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHhCCCCch
Q 041561 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDI 40 (156)
Q Consensus 11 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 40 (156)
+++.+...+..-.|.++++.+.+.+...+.
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~ 56 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSV 56 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCh
Confidence 444444445556677777777665544444
No 290
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.55 E-value=41 Score=25.30 Aligned_cols=62 Identities=10% Similarity=0.000 Sum_probs=49.0
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCccHHHHHHHHHhhcCCCchHHHHHHHHhcc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIAS--GVKHDGVTFVAILTPCSHSGLVYAEVEIFNSME 116 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 116 (156)
.+...+-.-|.+.|+.++|.+.|.++... +..--...+-.+++.+...+++..+........
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 46677888899999999999999999863 334444567778888888899999888888764
No 291
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.31 E-value=49 Score=21.21 Aligned_cols=31 Identities=10% Similarity=0.148 Sum_probs=21.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHh--CCCCch
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIVKD--GYGNDI 40 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~~~--g~~~~~ 40 (156)
.+++.+.+.+..-.|.++++.+.+. +...+.
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~ 69 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGI 69 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCH
Confidence 4566666777777888888888776 544444
No 292
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=37.09 E-value=46 Score=18.12 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=35.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCC
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHS 102 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 102 (156)
.++.+++.+++..-++++...+++..++| ..+..+|---++.+++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 36778888888888999999999999988 44566666666666553
No 293
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=36.00 E-value=85 Score=20.05 Aligned_cols=44 Identities=5% Similarity=-0.126 Sum_probs=24.7
Q ss_pred CCCCchHHHhHHHHHhhhcc---chHHHHHHHHHcCCCHHHHHHHHH
Q 041561 35 GYGNDIFVGSAPINIYCNCG---VTWNEMIHGYAENEYVEQAISLYK 78 (156)
Q Consensus 35 g~~~~~~~~~~li~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~ 78 (156)
|..++......++..+-..+ ..|.-.+..+.....+.+++++|+
T Consensus 40 g~~~~~~~~~~l~~~~D~d~~G~I~f~EF~~~~~~~~~l~~aF~~fD 86 (174)
T 2i7a_A 40 GDMFSLDECRSLVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQ 86 (174)
T ss_dssp -CCCCHHHHHHHHHHHCSSCSSEECHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666666666777665544 666666665554434444444444
No 294
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=35.96 E-value=1.3e+02 Score=22.09 Aligned_cols=96 Identities=13% Similarity=-0.068 Sum_probs=53.3
Q ss_pred chHHHHHHHHHcCCC-------HHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCc--------------------hHH
Q 041561 55 VTWNEMIHGYAENEY-------VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGL--------------------VYA 107 (156)
Q Consensus 55 ~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--------------------~~~ 107 (156)
..|+.--..+.+.++ ++++++.+++..... .-|...|+-+-..+.+.|. ...
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIET 280 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---------
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchh
Confidence 556665555566554 688888888887643 2255566553333333332 234
Q ss_pred HHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 108 EVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 108 a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
..+....+....+- ...-.++...+..|...|...|+.++|.++
T Consensus 281 ~~~~~~~~~~~~~~----~~~~~~s~~al~~l~d~~~~~~~~~~a~~~ 324 (349)
T 3q7a_A 281 VEAFGFPMPSDPLP----EDTPLPVPLALEYLADSFIEQNRVDDAAKV 324 (349)
T ss_dssp -----CCCCC-CCC----SSCCSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccc----cccCCCcHHHHHHHHHHHHhcCCHHHHHHH
Confidence 44444444322100 000146788899999999999999998764
No 295
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=35.35 E-value=26 Score=22.02 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=40.6
Q ss_pred HHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCch
Q 041561 29 TRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105 (156)
Q Consensus 29 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 105 (156)
+.+.+.|++++..- -.+++.+...+ .-.|.++++.+.+.+...+..|.---|+.+...|-+
T Consensus 8 ~~L~~~g~r~T~qR---------------~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR---------------QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHH---------------HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH---------------HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 45566777766532 22334444444 567889999998888777887777777777777744
No 296
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=34.76 E-value=43 Score=24.10 Aligned_cols=44 Identities=11% Similarity=0.017 Sum_probs=36.2
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 75 SLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 75 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
++++.+.+.|+.|..+++..++..+++.=.++.+.++++.+-.+
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~ 252 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ 252 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHC
Confidence 56667778899999999999999999877888888988888443
No 297
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.68 E-value=84 Score=21.45 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=44.6
Q ss_pred HHHHHHhc---CCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-------chHHHHHHHHHcCCCHHH
Q 041561 9 TTVLSSCA---KLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-------VTWNEMIHGYAENEYVEQ 72 (156)
Q Consensus 9 ~~ll~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-------~~~~~li~~~~~~g~~~~ 72 (156)
--+|+++. |-.|++.|.--+..|.+.|-.|....-..++-+.-.-| ..-++...++-+-|.++.
T Consensus 36 Yd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 109 (213)
T 3ctd_A 36 FDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEG 109 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 34556654 55889999999999999998888777667777666667 334445555555555543
No 298
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.64 E-value=15 Score=22.34 Aligned_cols=29 Identities=17% Similarity=-0.039 Sum_probs=22.1
Q ss_pred hcCCCchHHHHHHHHHHHHhCC---CCchHHH
Q 041561 15 CAKLSSLFLGRQILTRIVKDGY---GNDIFVG 43 (156)
Q Consensus 15 ~~~~~~~~~a~~~~~~m~~~g~---~~~~~~~ 43 (156)
+...||+....++|..+...|+ ..+..+|
T Consensus 78 L~~~gDv~~i~RVh~FLe~wGLIN~~~~~~~~ 109 (111)
T 2dce_A 78 LKNCGDVNCIGRIHTYLELIGAINFGCEQAVY 109 (111)
T ss_dssp TSSSSCHHHHHHHHHHHHHHSSSSCSCTTSSS
T ss_pred cccccCHHHHHHHHHHHHHcCeeecCCChhhc
Confidence 3336999999999999999985 4555444
No 299
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=33.37 E-value=97 Score=27.10 Aligned_cols=74 Identities=7% Similarity=0.072 Sum_probs=46.7
Q ss_pred HHHHhcCCC-chHHHHHHHHHHHH---hCCCCch---HHHhHHHHHhhhcc---chHHHHHHHHHcCCCHHHHHHHHHHH
Q 041561 11 VLSSCAKLS-SLFLGRQILTRIVK---DGYGNDI---FVGSAPINIYCNCG---VTWNEMIHGYAENEYVEQAISLYKDI 80 (156)
Q Consensus 11 ll~~~~~~~-~~~~a~~~~~~m~~---~g~~~~~---~~~~~li~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m 80 (156)
++.++.+.| +-+.|+++|+.|.+ .|+.-+- +..-+.-.+|.|+. .-|.++|+.- .|+.++...+.+++
T Consensus 784 F~~g~~~~G~~~~~a~~ifd~i~~Fa~YgFnKSHAaAYa~laYqtAyLK~hyP~eF~aAlLt~~--~~~~~k~~~~i~ea 861 (1220)
T 2hpi_A 784 FVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVE--RHDSDKVAEYIRDA 861 (1220)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHTTSCBCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHhHhh--cCCchHHHHHHHHH
Confidence 455555554 34557788887754 3443221 23333456666666 4456666665 68888999999999
Q ss_pred HHCCCC
Q 041561 81 IASGVK 86 (156)
Q Consensus 81 ~~~g~~ 86 (156)
++.|+.
T Consensus 862 r~~Gi~ 867 (1220)
T 2hpi_A 862 RALGIP 867 (1220)
T ss_dssp HTTTCC
T ss_pred HHCCCe
Confidence 999863
No 300
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=32.98 E-value=56 Score=23.63 Aligned_cols=44 Identities=5% Similarity=0.076 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 75 SLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 75 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
++++.+.+.|+.|..+++..++-.+++.=.++.+..+++.+..+
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~ 273 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSE 273 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhC
Confidence 45566777899999999999999999988999999999999543
No 301
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=32.87 E-value=82 Score=21.30 Aligned_cols=60 Identities=7% Similarity=0.096 Sum_probs=43.6
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH-HHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV-TFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
..|=..++.+ ..+...+..++|..|..+|+.-... -|...-..+-..|++++|.++|+.=
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555555 2344668999999999998875544 4555666667889999999998865
No 302
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=32.69 E-value=47 Score=23.62 Aligned_cols=44 Identities=9% Similarity=-0.042 Sum_probs=36.4
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 75 SLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 75 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
++++.+.+.|+.|..+++..++..+++.=.++.+.++++.+-.+
T Consensus 175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~ 218 (310)
T 3hzj_A 175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCE 218 (310)
T ss_dssp HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Confidence 45666777899999999999999999887899999999888543
No 303
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=32.64 E-value=96 Score=19.70 Aligned_cols=93 Identities=12% Similarity=0.087 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHhCCCCchH-------HHhHHHHHhhhcc-------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 21 LFLGRQILTRIVKDGYGNDIF-------VGSAPINIYCNCG-------VTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~~~~~~-------~~~~li~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
.+.|.++++.+...|-.|+.. .|......+-..- ..|+.++..+...+++.- ..+|+.+....+.
T Consensus 51 ~~HA~~l~~~i~~~gg~~~l~~i~~p~~~~~~~~e~l~~al~~E~~~~~~~~~l~~~a~~~~D~~~-~~fl~~~l~eq~e 129 (165)
T 1eum_A 51 MTHMQRLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKINELAHAAMTNQDYPT-FNFLQWYVSEQHE 129 (165)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHH
Confidence 467888889888777444321 2333333332221 568888888888887654 3444455443222
Q ss_pred ccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 87 HDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
.......++.-+.+.|.-..+.-+|+.-
T Consensus 130 -~~~~l~~~l~~l~~~g~~~~g~~~~D~~ 157 (165)
T 1eum_A 130 -EEKLFKSIIDKLSLAGKSGEGLYFIDKE 157 (165)
T ss_dssp -HHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCCccchhHHhHH
Confidence 3445666666666666645566666653
No 304
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=32.01 E-value=1.2e+02 Score=21.60 Aligned_cols=52 Identities=13% Similarity=0.073 Sum_probs=33.0
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 63 GYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 63 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
...+.|.++++++-...-++.. .-|...=..+++-+|=.|+++.|.+-++..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3456777777777666665543 223444445677777778877777766665
No 305
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=31.70 E-value=96 Score=21.40 Aligned_cols=49 Identities=16% Similarity=0.125 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHCCCCccHHH-------HHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 70 VEQAISLYKDIIASGVKHDGVT-------FVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
++-|+.+|+.+.+.-..|+... =-..+-.|.+.|.+++|.++++....+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 5678888888876543333221 123456788999999999999988544
No 306
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=31.03 E-value=1.1e+02 Score=22.07 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=19.3
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASG 84 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 84 (156)
.++.=++..|++.=.++.+.++|+.+...|
T Consensus 229 ~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 229 YLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp THHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 344445555555556777888888877666
No 307
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=30.78 E-value=90 Score=18.80 Aligned_cols=91 Identities=10% Similarity=-0.031 Sum_probs=53.6
Q ss_pred HHHHHHHHHhCCCCchHHHhHHHHHhhhcc---chHHHHHHHHHcC--------CCHHHHHHHHHHHHHCCC-CccHHHH
Q 041561 25 RQILTRIVKDGYGNDIFVGSAPINIYCNCG---VTWNEMIHGYAEN--------EYVEQAISLYKDIIASGV-KHDGVTF 92 (156)
Q Consensus 25 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~-~p~~~t~ 92 (156)
.++...+...|..|+......++..+-..+ .+|...+..+... ...+....+|+.+...|- ..+..-+
T Consensus 34 ~e~~~~l~~~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~el 113 (158)
T 2jnf_A 34 DQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVM 113 (158)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHCTTCCSEECHHHHHHHHHHHCCCCCCTTTTSSTHHHHHHHHCSSSSSSEEHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhccccchhhHHHHHHHHHHHhCCCCCCeEcHHHH
Confidence 334444556688888877788888776554 6676666666432 334456667777654321 2344445
Q ss_pred HHHHHhhcCCCchHHHHHHHHhc
Q 041561 93 VAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
..++..+...-.-+++..++..+
T Consensus 114 ~~~l~~~g~~~~~~~~~~~~~~~ 136 (158)
T 2jnf_A 114 REILAELDETLSSEDLDAMIDEI 136 (158)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCcCCHHHHHHHHHHh
Confidence 55555554333456667777766
No 308
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=30.29 E-value=70 Score=23.81 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=37.7
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccc
Q 041561 75 SLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHD 118 (156)
Q Consensus 75 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 118 (156)
++++.+.+.|+.|..+++..++-.+++.=.++.+.++++.+..+
T Consensus 217 ~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~e 260 (396)
T 1fkm_A 217 DLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSE 260 (396)
T ss_dssp HHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHC
Confidence 46666778899999999999999999888899999999988554
No 309
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=30.27 E-value=1.6e+02 Score=21.54 Aligned_cols=110 Identities=13% Similarity=0.076 Sum_probs=64.7
Q ss_pred HHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCccHHH
Q 041561 13 SSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENE-YVEQAISLYKDIIASGVKHDGVT 91 (156)
Q Consensus 13 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t 91 (156)
....+....++|.++.+.+.+.. |+-. ..|+.-=..+...| ++++++++++.+.....+ +..+
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n--P~~y-------------taWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~a 125 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN--PAHY-------------TVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQV 125 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TTCH-------------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC--chhH-------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHH
Confidence 33344555567888888776642 3332 34554444444566 599999999999875432 4445
Q ss_pred HHHHHHhhcCC-C-chHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCC
Q 041561 92 FVAILTPCSHS-G-LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSN 148 (156)
Q Consensus 92 ~~~ll~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~ 148 (156)
|+.=-..+.+. + +++++.++++.+... -..|-..|+----...+.|.
T Consensus 126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~----------dpkNy~AW~~R~wvl~~l~~ 174 (349)
T 3q7a_A 126 WHHRLLLLDRISPQDPVSEIEYIHGSLLP----------DPKNYHTWAYLHWLYSHFST 174 (349)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHTSS----------CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhcc
Confidence 65543343333 4 788999999988443 13356666554333333333
No 310
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=30.20 E-value=62 Score=20.08 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=44.5
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHH
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEI 111 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 111 (156)
..|--.|..-+.+++.+-|.++++-+++.| +..-|.++|-.|-..=++|.+.++
T Consensus 33 kLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 33 SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 456667888889999999999999999877 566788999999888888877664
No 311
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.10 E-value=1.1e+02 Score=19.37 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=22.5
Q ss_pred chHHHHHHHHHHHHhCCCCchHHHhHHHHHhhh
Q 041561 20 SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCN 52 (156)
Q Consensus 20 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 52 (156)
..+.+..+++.+.+.|+.-|..-....+....+
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~ 77 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSR 77 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHh
Confidence 456677888888888887777655555555544
No 312
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=28.47 E-value=57 Score=21.80 Aligned_cols=42 Identities=10% Similarity=-0.196 Sum_probs=28.2
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHhCCCCc-------hHHHhHHHHHhhh
Q 041561 11 VLSSCAKLSSLFLGRQILTRIVKDGYGND-------IFVGSAPINIYCN 52 (156)
Q Consensus 11 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~~ 52 (156)
.|...++.|+.+.++.+++.+.+.|..++ ..-++.|..+...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~ 53 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLN 53 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHc
Confidence 44555778889988889998888886544 3445555555443
No 313
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=28.17 E-value=64 Score=23.84 Aligned_cols=60 Identities=8% Similarity=0.079 Sum_probs=38.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCccHHHHHHHHHhhcCCC-chHHHHHHHHhcc
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASG-VKHDGVTFVAILTPCSHSG-LVYAEVEIFNSME 116 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~ 116 (156)
.-.++|.=|...|+.++|.+-++++...+ .. ..+.+..+..++-+.. .-+.+..++..+.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~-~~~v~~~i~~aLer~~~~re~~~~LL~~L~ 75 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFL-PEMLSKVIILSLDRSDEDKEKASSLISLLK 75 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGH-HHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhH-HHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 34678899999999999999999986321 11 1344555555555432 2234555666663
No 314
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.00 E-value=48 Score=20.75 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=16.0
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHhCCCCch
Q 041561 11 VLSSCAKLSSLFLGRQILTRIVKDGYGNDI 40 (156)
Q Consensus 11 ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 40 (156)
+++.+...+ ...|.++++.+.+.+...+.
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~~~~~~is~ 52 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVRKTASGINI 52 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHHTTCTTCCH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHhhCCCCCH
Confidence 344444444 55677777777666544444
No 315
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=27.69 E-value=75 Score=18.88 Aligned_cols=44 Identities=7% Similarity=0.051 Sum_probs=33.5
Q ss_pred CCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 101 HSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 101 ~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
..+..+.+.+++..+..+.| ...|...|+.++.+.|.-+-|..+
T Consensus 53 ~~~~~eq~~~mL~~W~~r~G-----------~~AT~~~L~~AL~~~~~~dvae~l 96 (110)
T 1wxp_A 53 SEDMKMRAKQLLVAWQDQEG-----------VHATPENLINALNKSGLSDLAESL 96 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHG-----------GGCCHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhC-----------cCcHHHHHHHHHHHcCcHHHHHHH
Confidence 34445678888888865543 457999999999999999888765
No 316
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=27.30 E-value=2.6e+02 Score=23.63 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=44.8
Q ss_pred HHHHhcCCCc-hHHHHHHHHHHHH---hCCCCch---HHHhHHHHHhhhcc---chHHHHHHHHHcCCCHHHHHHHHHHH
Q 041561 11 VLSSCAKLSS-LFLGRQILTRIVK---DGYGNDI---FVGSAPINIYCNCG---VTWNEMIHGYAENEYVEQAISLYKDI 80 (156)
Q Consensus 11 ll~~~~~~~~-~~~a~~~~~~m~~---~g~~~~~---~~~~~li~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m 80 (156)
++.++.+.|- -+.|+++|+.|.+ .|+.-+- +..-+.-.+|.|+. .-|.++++.- .+..+...++.+++
T Consensus 727 f~~g~~~~G~~~~~a~~i~~~i~~Fa~YgFnkSHaaaYa~~ay~tAylK~hyP~~F~aa~l~~~--~~~~~k~~~~i~e~ 804 (910)
T 2hnh_A 727 FAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTAD--MDNTEKVVGLVDEC 804 (910)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHTTCBCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHccChHHHHHHHhhcc--cCCchhHHHHHHHH
Confidence 4555555553 3447777777754 3443221 22333455666665 3345555543 56788889999999
Q ss_pred HHCCCC
Q 041561 81 IASGVK 86 (156)
Q Consensus 81 ~~~g~~ 86 (156)
++.|++
T Consensus 805 ~~~Gi~ 810 (910)
T 2hnh_A 805 WRMGLK 810 (910)
T ss_dssp HHTTCC
T ss_pred HHcCCe
Confidence 999864
No 317
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.07 E-value=81 Score=21.42 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=18.9
Q ss_pred HHHHhcCCCchHHHHHHHHHHHH
Q 041561 11 VLSSCAKLSSLFLGRQILTRIVK 33 (156)
Q Consensus 11 ll~~~~~~~~~~~a~~~~~~m~~ 33 (156)
.+..|.+.|.+++|.++++....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHHccchHHHHHHHHHHhc
Confidence 45678999999999999999643
No 318
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=26.50 E-value=1.6e+02 Score=23.39 Aligned_cols=95 Identities=9% Similarity=-0.011 Sum_probs=58.2
Q ss_pred CcccHHHHHHHhcCCCchHHHHHHHHHH----HHhCCCCchHHHhHHHHHhhhcc------chHHHHHHHHHcCCCHHHH
Q 041561 4 TQFPFTTVLSSCAKLSSLFLGRQILTRI----VKDGYGNDIFVGSAPINIYCNCG------VTWNEMIHGYAENEYVEQA 73 (156)
Q Consensus 4 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m----~~~g~~~~~~~~~~li~~~~~~~------~~~~~li~~~~~~g~~~~a 73 (156)
|..+|-...+-|...|....+.+++..= ....+. +.....|+..+...+ ..+-.++.-.++.|.++|+
T Consensus 27 d~~~f~~~~~~~l~~g~~~~l~eilqDe~n~~l~~~ig--WdLv~~lv~~l~~~~~~~~~~~~s~~iL~~la~lcnPrEv 104 (596)
T 4f52_E 27 DFGLFQLAGQRCIEEGHTDQLLEIIQNEKNKVIIKNMG--WNLVGPVVRCLLCKDKEDSKRKVYFLIFDLLVKLCNPKEL 104 (596)
T ss_dssp --CHHHHHHHHHHSSSCSHHHHHHHTTCTTHHHHHHTG--GGGHHHHHHHHHTSCCCSSSTHHHHHHHHHHHHHSCGGGH
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHhCcchhHHHHHcC--cccHHHHHHHHhhccccccchhHHHHHHHHHHHhCCHHHH
Confidence 5678999999999999999988888761 111121 222334455443322 5678889999999999887
Q ss_pred HH-HHHHHHHCCCCccHHHHHHHHHhhc
Q 041561 74 IS-LYKDIIASGVKHDGVTFVAILTPCS 100 (156)
Q Consensus 74 ~~-~~~~m~~~g~~p~~~t~~~ll~~~~ 100 (156)
+- +.+.+.+..-.-...+|+.++.++.
T Consensus 105 il~llE~le~~~~~~~~~~f~~LL~~Lq 132 (596)
T 4f52_E 105 LLGLLELIEEPSGKQISQSILLLLQPLQ 132 (596)
T ss_dssp HHHHGGGGTSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCcchHHHHHHHHHHHH
Confidence 43 3333332221112356777777664
No 319
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.27 E-value=99 Score=18.35 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 21 LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
.-.+.++-+++...|+.|+..+..-++..|...+
T Consensus 25 ~Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 25 SASAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CCCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3458889999999999999866666655444433
No 320
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=25.62 E-value=1.1e+02 Score=18.81 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=23.3
Q ss_pred cCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 16 AKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 16 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
++.|++++|++.+++..+. +.---..-+.||..-+..+
T Consensus 48 Ak~gdfe~A~~~l~eA~e~-l~~AH~~QT~Liq~EA~G~ 85 (120)
T 3l8r_A 48 MREKNYILAEQKLQEANDE-LLKAHQAQTDLLQEYASGT 85 (120)
T ss_dssp HHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCC
Confidence 5789999999999887543 1112233445555555443
No 321
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=25.45 E-value=1.6e+02 Score=20.07 Aligned_cols=13 Identities=8% Similarity=-0.202 Sum_probs=6.0
Q ss_pred CCCchHHHHHHHH
Q 041561 101 HSGLVYAEVEIFN 113 (156)
Q Consensus 101 ~~~~~~~a~~~~~ 113 (156)
..|+.+-+..+++
T Consensus 138 ~~~~~~~v~~Ll~ 150 (285)
T 3kea_A 138 MLNDVSIVSYFLS 150 (285)
T ss_dssp HTTCHHHHHHHHT
T ss_pred HcCCHHHHHHHHh
Confidence 4455544444443
No 322
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.30 E-value=1.3e+02 Score=19.98 Aligned_cols=29 Identities=10% Similarity=-0.178 Sum_probs=23.0
Q ss_pred HHHhcCCCchHHHHHHHHHHHHhCCCCch
Q 041561 12 LSSCAKLSSLFLGRQILTRIVKDGYGNDI 40 (156)
Q Consensus 12 l~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 40 (156)
|...++.|+.+..+.+++.+.+.|..++.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~ 37 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTD 37 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcch
Confidence 34446789999999999999998876664
No 323
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.13 E-value=83 Score=21.63 Aligned_cols=45 Identities=9% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHCCCCccHH-HHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 71 EQAISLYKDIIASGVKHDGV-TFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 71 ~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
++..++|..|..+|+.-... -|...-..+-..|++++|..||..=
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46678999999998875554 4555666666889999999999865
No 324
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=25.07 E-value=42 Score=26.59 Aligned_cols=51 Identities=14% Similarity=0.010 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHH
Q 041561 57 WNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEV 109 (156)
Q Consensus 57 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 109 (156)
-.-++..|.+.|..+.|.++++.|-.+-+. +...+ ..+..++|+|+.+.++
T Consensus 519 ~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~Vk 569 (570)
T 3f3f_C 519 IEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELVK 569 (570)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhcc
Confidence 455899999999999999999998754332 33455 5566778999887654
No 325
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=24.39 E-value=1.3e+02 Score=18.59 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=36.0
Q ss_pred HHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhhC
Q 041561 93 VAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKAA 156 (156)
Q Consensus 93 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~~ 156 (156)
-=.|+..+.+++.+.|.++++.+... -+...|.+++-.|--.=+++.+.++|
T Consensus 36 kDAietAa~S~d~elaEeLL~yFVe~------------g~kEcF~A~LytCYdLlrpDvVLEla 87 (125)
T 3qil_A 36 KDAMQYASESKDTELAEELLQWFLQE------------EKRECFGACLFTCYDLLRPDVVLELA 87 (125)
T ss_dssp SHHHHTTTSSCCSHHHHHHHHHHTTS------------CSHHHHHHHHHHHTTCSCTTHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc------------CchHHHHHHHHHHHhccChHHHHHHH
Confidence 33467778899999999999998422 25666777776666666666665553
No 326
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=24.34 E-value=3.9 Score=32.25 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=56.1
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChh
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLV 134 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~ 134 (156)
..|+.|-++.-..+++.+|.+-|-. .-|...|.-+|.++.+.|.+++-...+..-++. ..+..
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-----------~ke~~ 117 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-----------ARESY 117 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-----------CCSTT
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-----------hcccc
Confidence 6777777777777777777765522 235556778888888888888887777755332 23555
Q ss_pred hHHHHHHHHhhcCCHhHH
Q 041561 135 VWGDLVSSCQVHSNVRLA 152 (156)
Q Consensus 135 ~~~~li~~~~~~g~~~~a 152 (156)
.=+.|+-+|++.++..+-
T Consensus 118 IDteLi~ayAk~~rL~el 135 (624)
T 3lvg_A 118 VETELIFALAKTNRLAEL 135 (624)
T ss_dssp TTHHHHHHHHTSCSSSTT
T ss_pred cHHHHHHHHHhhCcHHHH
Confidence 566788888888876653
No 327
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.06 E-value=1.5e+02 Score=19.15 Aligned_cols=61 Identities=5% Similarity=-0.058 Sum_probs=43.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc--cHHHHHHHHH----hh--cCCCchHHHHHHHHhccc
Q 041561 56 TWNEMIHGYAENEYVEQAISLYKDIIASGVKH--DGVTFVAILT----PC--SHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 56 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~----~~--~~~~~~~~a~~~~~~m~~ 117 (156)
+|-.-+..|.. |++-+|-++|++.=+..-.| +...|-.||+ ++ .+.|+...|..++..-..
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455555555 99999999999986554455 6677888888 22 247899999888887644
No 328
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.41 E-value=2.3e+02 Score=21.09 Aligned_cols=96 Identities=6% Similarity=-0.033 Sum_probs=62.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHHHcCCCHHHHHHHHHHHHH---CC
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGYAENEYVEQAISLYKDIIA---SG 84 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g 84 (156)
...+-..+.+.|+.+.|.+.+.++...-..+.. .+ ..+-.+|..+...+++..+......... .+
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~-----ki-------d~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~ 201 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA-----KI-------DVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKG 201 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS-----HH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH-----HH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcC
Confidence 345566777889999999999988764322211 11 4566678888888999988888888653 33
Q ss_pred CCccHHH----HHHHHHhhcCCCchHHHHHHHHhccc
Q 041561 85 VKHDGVT----FVAILTPCSHSGLVYAEVEIFNSMEH 117 (156)
Q Consensus 85 ~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~m~~ 117 (156)
-.|+... +..+ .+...+++..|...|-+...
T Consensus 202 ~d~~~~~~lk~~~gl--~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 202 GDWERRNRYKTYYGI--HCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp CCTHHHHHHHHHHHH--GGGGTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--HHHHhChHHHHHHHHHHHhc
Confidence 3444332 2222 23357888888887766533
No 329
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=23.37 E-value=29 Score=18.27 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=18.1
Q ss_pred HHHcCC-CHHHHHHHHHHHHHCCCCccHH
Q 041561 63 GYAENE-YVEQAISLYKDIIASGVKHDGV 90 (156)
Q Consensus 63 ~~~~~g-~~~~a~~~~~~m~~~g~~p~~~ 90 (156)
++..+| +++.|...|.+. +..+.|+.+
T Consensus 27 cL~~n~Wd~~~A~~~F~~~-~~~IP~eAF 54 (57)
T 2jp7_A 27 LAEQSNWNYEVAIKGFQSS-MNGIPREAF 54 (57)
T ss_dssp HHHHTTTCSHHHHHHHHHS-TTTSCHHHH
T ss_pred HHHHcCCCHHHHHHHHHHH-HcCCCHHHh
Confidence 334444 789999999996 445666554
No 330
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=23.35 E-value=66 Score=19.14 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=31.7
Q ss_pred CchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 103 GLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 103 ~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
+..+.+.+++..+..+.| ...|...|+.++.+.|+-+-|.++
T Consensus 56 ~~~eq~~~mL~~W~~~~g-----------~~AT~~~L~~aL~~i~r~diae~l 97 (111)
T 2yqf_A 56 SLLEQSVALLNLWVIREG-----------QNANMENLYTALQSIDRGEIVNML 97 (111)
T ss_dssp CHHHHHHHHHHHHHHHHT-----------TSCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhC-----------CCchHHHHHHHHHHcCcHHHHHHH
Confidence 345667788887755533 346899999999999999888765
No 331
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=23.32 E-value=2e+02 Score=20.28 Aligned_cols=59 Identities=7% Similarity=0.041 Sum_probs=35.6
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcC---CCchHHHHHHHH
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSH---SGLVYAEVEIFN 113 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~ 113 (156)
.++.=++..|++.=.++.+.++|+.+...|...-....-+++..+.. ..+.++..+.+.
T Consensus 190 ~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~d~~~~l~~l~ 251 (310)
T 3hzj_A 190 YASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFR 251 (310)
T ss_dssp TSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45556667777766788899999998887754322222223322211 236777777775
No 332
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=22.98 E-value=90 Score=17.95 Aligned_cols=41 Identities=12% Similarity=-0.005 Sum_probs=31.2
Q ss_pred chHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 104 LVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 104 ~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
..+.+.+++.....+.| ...|...|+.++...|.-+-|..|
T Consensus 53 ~~eq~~~mL~~W~~~~g-----------~~At~~~L~~AL~~~~~~~iae~i 93 (99)
T 1fad_A 53 LSERVRESLKVWKNAEK-----------KNASVAGLVKALRTCRLNLVADLV 93 (99)
T ss_dssp HHHHHHHHHHHHHHHHG-----------GGGSHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-----------CCCcHHHHHHHHHHCCcHHHHHHH
Confidence 34667788887755533 456899999999999999888765
No 333
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=22.88 E-value=1e+02 Score=18.85 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=30.3
Q ss_pred hHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 105 VYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 105 ~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
.+.+.+++.....+.| ...|...|+.++.+.|+-+-|..|
T Consensus 46 ~eq~~~mL~~W~~r~G-----------~~ATv~~L~~AL~~i~~~diAe~I 85 (122)
T 3ezq_B 46 TERVRESLRIWKNTEK-----------ENATVAHLVGALRSCQMNLVADLV 85 (122)
T ss_dssp HHHHHHHHHHHHHHCT-----------TTCCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhC-----------CCchHHHHHHHHHHCCCHHHHHHH
Confidence 3557778877755533 346899999999999999888765
No 334
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=22.85 E-value=2.2e+02 Score=20.57 Aligned_cols=103 Identities=14% Similarity=0.123 Sum_probs=59.3
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc----------------------------chHHH
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------------------VTWNE 59 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----------------------------~~~~~ 59 (156)
|..++-++....--..|..+++.|.. ...|..+ |+...+... ..|..
T Consensus 83 f~~ll~~l~~~~~~~DA~~L~~A~~g--~Gtde~~---lieIL~tRs~~ql~~i~~~Y~~~yg~sLe~dI~~e~sG~~~~ 157 (327)
T 1w3w_A 83 FERLIVALMYPPYRYEAKELHDAMKG--LGTKEGV---IIEILASRTKNQLREIMKAYEEDYGSSLEEDIQADTSGYLER 157 (327)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHHHHHS--SSCCHHH---HHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhc--cCCCHHH---HHHHHHhCCHHHHHHHHHHHHHHhCccHHHHHhhccCchHHH
Confidence 45566666666656788999888874 4456543 444444332 34566
Q ss_pred HHHHHHcCCCH------------HHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccc
Q 041561 60 MIHGYAENEYV------------EQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHE 120 (156)
Q Consensus 60 li~~~~~~g~~------------~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 120 (156)
++.+..+..+. .+|..+++.|.. +...|..++..+|-. .....-..+++...+.+|
T Consensus 158 ~L~~lv~~~r~~~~~~vd~~~a~~DA~~L~~A~~~-~~GTde~~lirIl~t----Rs~~~L~~i~~~Y~~~~g 225 (327)
T 1w3w_A 158 ILVCLLQGSRDDVSSFVDPALALQDAQDLYAAGEK-IRGTDEMKFITILCT----RSATHLLRVFEEYEKIAN 225 (327)
T ss_dssp HHHHHHSCCCCCCCSCCCHHHHHHHHHHHHHHHHC-SSSCCHHHHHHHHHH----SCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccCCcccccCHHHHHHHHHHHHHHhhC-cCCCcHhHhhHHHhc----CCHHHHHHHHHHHHHHHC
Confidence 66666665432 247778877753 455688887776643 222333444444434444
No 335
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=22.84 E-value=2.1e+02 Score=25.15 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=42.7
Q ss_pred hHHHHHHHHHcCCC-HHHHHHHHHHHHH-CCCCccHHH----------------------HHHHHHhhcCCCchHHHHHH
Q 041561 56 TWNEMIHGYAENEY-VEQAISLYKDIIA-SGVKHDGVT----------------------FVAILTPCSHSGLVYAEVEI 111 (156)
Q Consensus 56 ~~~~li~~~~~~g~-~~~a~~~~~~m~~-~g~~p~~~t----------------------~~~ll~~~~~~~~~~~a~~~ 111 (156)
.....+.++.++|- -+.|.++|+.|.. .++..|..+ |.+++.. ..|+.++...+
T Consensus 780 ~r~~F~~g~~~~G~~~~~a~~ifd~i~~Fa~YgFnKSHAaAYa~laYqtAyLK~hyP~eF~aAlLt~--~~~~~~k~~~~ 857 (1220)
T 2hpi_A 780 HRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVEFMAALLSV--ERHDSDKVAEY 857 (1220)
T ss_dssp HHHHHHHHHHHHSCCSHHHHHHHHHHHHHTTSCBCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH--TTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHhHh--hcCCchHHHHH
Confidence 34566788888775 4678889999976 455444332 2334443 26788888888
Q ss_pred HHhcccccccC
Q 041561 112 FNSMEHDHEVK 122 (156)
Q Consensus 112 ~~~m~~~~~~~ 122 (156)
+.++ +++|+.
T Consensus 858 i~ea-r~~Gi~ 867 (1220)
T 2hpi_A 858 IRDA-RALGIP 867 (1220)
T ss_dssp HHHH-HTTTCC
T ss_pred HHHH-HHCCCe
Confidence 8888 667764
No 336
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=22.59 E-value=2e+02 Score=25.51 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCC
Q 041561 70 VEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSN 148 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~ 148 (156)
.++..+.|.++.+-=-.-|.......+..-.+.+++..|.+++..+.++ +|....|..++..+...|=
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~-----------k~~~~~~~~~~~~~~~l~w 1332 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE-----------KRTRDHFVELAAINGALGH 1332 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------TCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc-----------cccHHHHHHHHHHHHHcCC
Confidence 4556677777765311223332222233333688999999999999655 6788899988888766653
No 337
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=22.59 E-value=1.3e+02 Score=17.92 Aligned_cols=30 Identities=17% Similarity=0.031 Sum_probs=24.5
Q ss_pred cccHHHHHHHhcCCCchHHHHHHHHHHHHhCC
Q 041561 5 QFPFTTVLSSCAKLSSLFLGRQILTRIVKDGY 36 (156)
Q Consensus 5 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~g~ 36 (156)
-.|.+.+.+.. .||+....+||+.+...|+
T Consensus 67 yLT~t~~r~~l--~gDv~~i~RVh~FLe~wGL 96 (104)
T 2fq3_A 67 YFSVTTARRNV--SGDAAALFRLHKFLTKWGL 96 (104)
T ss_dssp CCCHHHHHHHS--CSCHHHHHHHHHHHHHTTS
T ss_pred eeeHHHHHHHc--cccHHHHHHHHHHHHHcCe
Confidence 35667777766 4899999999999999985
No 338
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=22.51 E-value=2.2e+02 Score=20.43 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc----------------------------chHHHHHHHHHcCCCHHHH
Q 041561 22 FLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------------------VTWNEMIHGYAENEYVEQA 73 (156)
Q Consensus 22 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----------------------------~~~~~li~~~~~~g~~~~a 73 (156)
..|..+.+-|. |+..|. ..||+..+... ..|..++-++.....-.+|
T Consensus 18 ~Da~~L~~A~k--G~Gtde---~~lieIL~~rs~~q~~~I~~~Y~~~~g~~L~~dl~~e~sG~f~~ll~~l~~~~~~~DA 92 (320)
T 1yii_A 18 ADAEALRKAMK--GMGTDE---ETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDA 92 (320)
T ss_dssp HHHHHHHHHHS--SSSCCH---HHHHHHHHHSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCH---HHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCchHHHHHHHHccChHHHHH
Confidence 45777777775 444555 34455544443 3567777777776556778
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHH
Q 041561 74 ISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFN 113 (156)
Q Consensus 74 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 113 (156)
..+.+.| .|...|..++.-++-.- ...++....+.|.
T Consensus 93 ~~L~~A~--kg~Gtde~~lieIL~~R-s~~ql~~I~~aY~ 129 (320)
T 1yii_A 93 HALKHAI--KGAGTNEKVLTEILASR-TPAEVQNIKQVYM 129 (320)
T ss_dssp HHHHHHH--SSSSCCHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred HHHHHHh--ccCCCchHHHhHHHhcC-CHHHHHHHHHHHH
Confidence 8888888 45667877765555432 2223444444443
No 339
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=22.48 E-value=1.6e+02 Score=18.90 Aligned_cols=93 Identities=9% Similarity=0.090 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHhCCCCch-------HHHhHHHHHhhhcc-------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 041561 21 LFLGRQILTRIVKDGYGNDI-------FVGSAPINIYCNCG-------VTWNEMIHGYAENEYVEQAISLYKDIIASGVK 86 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 86 (156)
.+.|.++++.+...|-.|+. .-|..+..++-..= ..++.++..+...+|+.- .++++.+....+.
T Consensus 53 ~~HA~~l~~~i~~~gg~~~l~~i~~p~~~~~~~~e~le~aL~~E~~v~~~~~~l~~~a~~~~D~~t-~~fle~~l~eq~e 131 (173)
T 1s3q_A 53 LMHAMKMFDFVSERGGRVKLYAVEEPPSEWDSPLAAFEHVYEHEVNVTKRIHELVEMAMQEKDFAT-YNFLQWYVAEQVE 131 (173)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHH
Confidence 46788888888887755532 12233333332221 677888888887777653 4445454433222
Q ss_pred ccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 87 HDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 87 p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
....+..++.-+.+.|.-..+.-+|+.-
T Consensus 132 -~~~~l~~~l~~l~~~g~~~~g~~~~D~~ 159 (173)
T 1s3q_A 132 -EEASALDIVEKLRLIGEDKRALLFLDKE 159 (173)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCCCcchHhHHhHH
Confidence 3445566666666666555677777764
No 340
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiat midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Probab=22.47 E-value=96 Score=22.50 Aligned_cols=62 Identities=10% Similarity=0.040 Sum_probs=34.7
Q ss_pred HHhCCCCchHHHhHHHHHhhhcc-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHH
Q 041561 32 VKDGYGNDIFVGSAPINIYCNCG-----------VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFV 93 (156)
Q Consensus 32 ~~~g~~~~~~~~~~li~~~~~~~-----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 93 (156)
.+-|.+|+-..||+|++.=...| .+-++||.+-....+++..++.++++-.+.+..|...|.
T Consensus 87 ~~VG~EPSG~~FNSi~~Le~~~g~P~NPmINAGAI~~~sll~~~~~~~~~~~il~~~~~lag~~l~~d~~v~~ 159 (310)
T 1u60_A 87 DKIGADPTGLPFNSVIALELHGGKPLSPLVNAGAIATTSLINAENVEQRWQRILHIQQQLAGEQVALSDEVNQ 159 (310)
T ss_dssp HHTCSCCCSSCTTCHHHHHHTTTCCCCTTSHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHCTTCEECHHHHH
T ss_pred HHhCCCCCCCCCcchhhhhccCCCcCCccccHHHHHHHHhccCCCcHHHHHHHHHHHHHHhCCCCccCHHHHH
Confidence 34688999999999986554445 333333322111112334555666665456666666654
No 341
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=22.45 E-value=51 Score=15.20 Aligned_cols=23 Identities=4% Similarity=-0.073 Sum_probs=19.1
Q ss_pred HHHHHhcCCCchHHHHHHHHHHH
Q 041561 10 TVLSSCAKLSSLFLGRQILTRIV 32 (156)
Q Consensus 10 ~ll~~~~~~~~~~~a~~~~~~m~ 32 (156)
-++..|-+.|+.++|+.+-.+++
T Consensus 7 QW~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 7 QWAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 46788888999999999977765
No 342
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=21.72 E-value=2.6e+02 Score=21.07 Aligned_cols=86 Identities=14% Similarity=0.116 Sum_probs=51.5
Q ss_pred CCchHHHHHHHHHHHHhCC----CCchHHHhHHHHHhhhc-------cchHHHHHHHHH---cCCCHHHHHHHHHHHHHC
Q 041561 18 LSSLFLGRQILTRIVKDGY----GNDIFVGSAPINIYCNC-------GVTWNEMIHGYA---ENEYVEQAISLYKDIIAS 83 (156)
Q Consensus 18 ~~~~~~a~~~~~~m~~~g~----~~~~~~~~~li~~~~~~-------~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~ 83 (156)
.|++..+..+++.+....- .....+-..+-....+. |..+-.+|.++. +..+++.|+..+.+|.+.
T Consensus 205 ~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~ 284 (447)
T 3pvs_A 205 NGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITA 284 (447)
T ss_dssp CSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 5888888888888765432 11223333333333332 222334555554 457899999999999999
Q ss_pred CCCccHHHHHHHHHhhcCCC
Q 041561 84 GVKHDGVTFVAILTPCSHSG 103 (156)
Q Consensus 84 g~~p~~~t~~~ll~~~~~~~ 103 (156)
|..|....=..++.+.-.-|
T Consensus 285 Gedp~~i~rrl~~~a~edig 304 (447)
T 3pvs_A 285 GGDPLYVARRCLAIASEDVG 304 (447)
T ss_dssp TCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHhccc
Confidence 98776655544554444433
No 343
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=21.40 E-value=1.6e+02 Score=18.56 Aligned_cols=108 Identities=5% Similarity=-0.033 Sum_probs=69.8
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc-chHHHHHHHHHcCC--CHHHHHHHHHHHHHC-
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG-VTWNEMIHGYAENE--YVEQAISLYKDIIAS- 83 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~~li~~~~~~g--~~~~a~~~~~~m~~~- 83 (156)
++.++..+-..|-+++. |+++.+-.-.-|.....-+|..|.... .....|-.+.. .+ +++.+.+.-..++-.
T Consensus 10 ~~~~~~~l~~~g~LD~~---f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~-~~~~D~~~l~~~aH~LKGss 85 (153)
T 3us6_A 10 WVDYIKSMFMEGFLDGQ---FLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVD-QQSIDFKKVDAHVHQFKGSS 85 (153)
T ss_dssp HHHHHHHHHHTTSCCHH---HHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHT-SSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHH---HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccHHHHHHHHHHHHHHH
Confidence 45566666677777733 666655433346667778888877765 55666666654 44 888888888888743
Q ss_pred -CCCccH-HHHHHHHHhhcCCCchHHHHHHHHhccccc
Q 041561 84 -GVKHDG-VTFVAILTPCSHSGLVYAEVEIFNSMEHDH 119 (156)
Q Consensus 84 -g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 119 (156)
.+.-.. .....-+..+++.++.+.+...+..++.++
T Consensus 86 ~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~ 123 (153)
T 3us6_A 86 ASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEY 123 (153)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 122222 233345667778899998888888886553
No 344
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=21.18 E-value=1.3e+02 Score=18.01 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=30.6
Q ss_pred hHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhhh
Q 041561 105 VYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKKA 155 (156)
Q Consensus 105 ~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~~ 155 (156)
-+.+.+++..+..+.| -...|...|+.+..+.|+-+-|.++
T Consensus 53 ~eq~~~mL~~W~~~~g----------~~~Atv~~L~~aL~~~~r~diae~l 93 (118)
T 2of5_H 53 DEQIRHMLFSWAERQA----------GQPGAVGLLVQALEQSDRQDVAEEV 93 (118)
T ss_dssp HHHHHHHHHHHHHTTS----------SCSSHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC----------CCCcHHHHHHHHHHHcCcHHHHHHH
Confidence 4667788877754421 1268999999999999999888764
No 345
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=21.03 E-value=1.9e+02 Score=20.79 Aligned_cols=62 Identities=8% Similarity=0.007 Sum_probs=39.8
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHH---HHHHHHHhhc----CCCchHHHHHHHHhcc
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGV---TFVAILTPCS----HSGLVYAEVEIFNSME 116 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~----~~~~~~~a~~~~~~m~ 116 (156)
.++.=++..|++.=.++.+.++|+.+...|.....+ ...+++..+. ...+.++...++..+.
T Consensus 245 f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p 313 (345)
T 2qfz_A 245 FAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLP 313 (345)
T ss_dssp HHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCS
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCC
Confidence 344556666777777899999999999887654322 2233343322 2467777777777663
No 346
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=21.00 E-value=2.4e+02 Score=20.25 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc----------------------------chHHH
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG----------------------------VTWNE 59 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----------------------------~~~~~ 59 (156)
|-.++-++.....-..|..+++.|.. ...|.. .||...+... ..|..
T Consensus 76 f~~ll~~l~~~~~~~DA~~L~~A~kg--~Gtde~---~lieIL~~Rs~~ql~~I~~aY~~~y~~~Le~di~~e~sG~~~~ 150 (320)
T 1yii_A 76 FETLMVSLMRPARIFDAHALKHAIKG--AGTNEK---VLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQR 150 (320)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHSS--SSCCHH---HHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHhcc--CCCchH---HHhHHHhcCCHHHHHHHHHHHHHhhCcCHHHHHHhhcCCcHHH
Confidence 45566666666666778888888844 445653 4444444433 34556
Q ss_pred HHHHHHcCCCH-----------HHHHHHHHHHHHCCCCccHHHHHHHHH
Q 041561 60 MIHGYAENEYV-----------EQAISLYKDIIASGVKHDGVTFVAILT 97 (156)
Q Consensus 60 li~~~~~~g~~-----------~~a~~~~~~m~~~g~~p~~~t~~~ll~ 97 (156)
++.+..+..+. .+|..+++.|.. |...|..++..++-
T Consensus 151 ~l~~l~~~~r~~~~~vd~~~a~~dA~~L~~A~~~-~~Gtde~~li~Il~ 198 (320)
T 1yii_A 151 LLVVLLQANRDPDGRVDEALVEKDAQVLFRAGEL-KWGTDEETFITILG 198 (320)
T ss_dssp HHHHHHTTCCCCSCCCCHHHHHHHHHHHHHHHHT-TTCSSHHHHHHHHH
T ss_pred HHHHHHhhccCccccCCchHHHHHHHHHHHHHhc-CCCCCHHHHHHHHH
Confidence 66666664431 247777777753 45678888777664
No 347
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.96 E-value=1.8e+02 Score=18.85 Aligned_cols=95 Identities=12% Similarity=0.007 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhcc---------------chHHHHHHHHHcCC---CHHHHHHHHHHHHH
Q 041561 21 LFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCG---------------VTWNEMIHGYAENE---YVEQAISLYKDIIA 82 (156)
Q Consensus 21 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---------------~~~~~li~~~~~~g---~~~~a~~~~~~m~~ 82 (156)
.+.+..+++.+.+.|+.-|..-..+.+....+.| +.=..+=.++.... ..+.|..+.+.-..
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~~I~~eL~~KGI~~~~I~~al~~~~~~de~e~a~~l~~Kk~~ 128 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAEDALILYTDKLQVEKGVTLAEKLAN 128 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHcCCCHHHHHHHHHhCCchhHHHHHHHHHHHHHh
Confidence 4678899999999999888877777787766432 22222222222211 12334444443221
Q ss_pred C-CCCccHHHHHHHHHhhcCCC-chHHHHHHHHhc
Q 041561 83 S-GVKHDGVTFVAILTPCSHSG-LVYAEVEIFNSM 115 (156)
Q Consensus 83 ~-g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~m 115 (156)
. .-.++.....-++..+.+.| ..+.+..+++.+
T Consensus 129 ~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l 163 (177)
T 3e3v_A 129 RYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQEL 163 (177)
T ss_dssp HTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Confidence 1 11233344556666666666 566666666665
No 348
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=20.83 E-value=80 Score=21.96 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHCCCC-ccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 70 VEQAISLYKDIIASGVK-HDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 70 ~~~a~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
++...++.+.-.+.|++ .=...|+.+|+--.-..++++.++++..+
T Consensus 198 l~N~~~I~~i~l~aGv~~viPHIYssIIDk~TG~TrpedV~~ll~~~ 244 (249)
T 3m0z_A 198 LENYSEILKIALDAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEMT 244 (249)
T ss_dssp TTTHHHHHHHHHHHTCSCBCCBCCGGGBCTTTCCBCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHH
Confidence 34445555555555432 11224455665555555666666666655
No 349
>3r5e_A Transaldolase; pentose phosphate pathway, TIM barrel fold, transferase; 2.10A {Corynebacterium glutamicum}
Probab=20.82 E-value=1.8e+02 Score=21.64 Aligned_cols=45 Identities=9% Similarity=0.078 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHhCCCCchHHHhHHHHHhhhccchHHHHHHHH
Q 041561 20 SLFLGRQILTRIVKDGYGNDIFVGSAPINIYCNCGVTWNEMIHGY 64 (156)
Q Consensus 20 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~~li~~~ 64 (156)
+.++|.++++.+.+.|+..+..+-..+=.+..+....|+.|+...
T Consensus 311 ~~~~a~~~l~~l~~~gid~~~v~~~L~~eGv~~F~~~~~~Ll~~~ 355 (360)
T 3r5e_A 311 SAAEADAVFSQLEALGVDLADVFQVLETEGVDKFVASWSELLESM 355 (360)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999987776544444444444445566665544
No 350
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=20.64 E-value=1.5e+02 Score=17.77 Aligned_cols=104 Identities=10% Similarity=0.023 Sum_probs=56.6
Q ss_pred HHHHhCCCCchHHHhHHHHHhhhcc---chHHHHHHHHHcCC-------CHHHHHHHHHHHHHCCC-CccHHHHHHHHHh
Q 041561 30 RIVKDGYGNDIFVGSAPINIYCNCG---VTWNEMIHGYAENE-------YVEQAISLYKDIIASGV-KHDGVTFVAILTP 98 (156)
Q Consensus 30 ~m~~~g~~~~~~~~~~li~~~~~~~---~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~ 98 (156)
.+...|..++......++..+-..+ .+|...+..+.... ..+....+|+.+...+- ..+..-+..++..
T Consensus 45 ~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 124 (162)
T 1top_A 45 VMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRA 124 (162)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHCTTSCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHT
T ss_pred HHHHcCCCCCHHHHHHHHHHHcCCCCCcEeHHHHHHHHHHHhccccccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3445577777777777777765543 56655555554321 23456667777754321 2344445555555
Q ss_pred hcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHh
Q 041561 99 CSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQ 144 (156)
Q Consensus 99 ~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~ 144 (156)
+...-.-+++..+|..+-.. .....+|.-++..+.
T Consensus 125 ~g~~~~~~~~~~~~~~~d~~-----------~dg~i~~~eF~~~~~ 159 (162)
T 1top_A 125 TGEHVTEEDIEDLMKDSDKN-----------NDGRIDFDEFLKMME 159 (162)
T ss_dssp TTCCCCHHHHHHHHHHHCTT-----------CSSSBCHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHhCCC-----------CCCcCcHHHHHHHHh
Confidence 44333446677777777222 223456666665544
No 351
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=20.53 E-value=4.1e+02 Score=22.81 Aligned_cols=133 Identities=11% Similarity=0.032 Sum_probs=63.4
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCch----HHHhHHHHHhhhcc---chHHHHHHHHHcCCCHHHHHHHHHHH
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDI----FVGSAPINIYCNCG---VTWNEMIHGYAENEYVEQAISLYKDI 80 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m 80 (156)
|..++..+-+.+..+.+.+.-....+..-.-+. ..|..+.+++...+ ..|++|+..=-..-+-+=..++...|
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~l 981 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQL 981 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 556677777777777777666655543221111 24555555555554 55555555433333333333344444
Q ss_pred HHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhcccccccCCCcCCCCCCChhhHHHHHHHHhhcCCHhHHhh
Q 041561 81 IASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSMEHDHEVKPKCLMPYKDDLVVWGDLVSSCQVHSNVRLAKK 154 (156)
Q Consensus 81 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~c~~~~~pd~~~~~~li~~~~~~g~~~~a~~ 154 (156)
-+.|-.. .+++ +--.|..++..+++....+.... ......-|..|-.=+...|+++.|-.
T Consensus 982 ce~~~~~------~L~~-lpf~gl~~~Vd~IL~~kAr~~~~-------~~~~p~Yy~iLYs~ri~r~dyR~AA~ 1041 (1139)
T 4fhn_B 982 TKQGKIN------QLLN-YSMPTLRQDVDNLLERKAFQMIN-------VESQPCWYNILFSWRYKHQNYRDAAA 1041 (1139)
T ss_dssp HHHCCHH------HHHH-HTTTSCHHHHHHHHHHHHHHHHH-------HCCSTHHHHHHHHHHHHHHTTSCHHH
T ss_pred HhCCChh------hhhC-CCCccHHHHHHHHHHHHHHhCCc-------cccCCCHHHHhHhhhhccCChHHHHH
Confidence 4433211 1111 22345555666666544221100 11112235555555566667666644
No 352
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=20.50 E-value=2.4e+02 Score=20.17 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=25.3
Q ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHH
Q 041561 55 VTWNEMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAIL 96 (156)
Q Consensus 55 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 96 (156)
..|..++-++...-.-.+|..+++.|+. ...|..++.-++
T Consensus 72 G~f~~ll~~l~~~~~~~dA~~L~~A~kg--~Gtde~~lieIL 111 (315)
T 1dm5_A 72 GNYEAAALALLRKPDEFLAEQLHAAMKG--LGTDKNALIDIL 111 (315)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHS--SSCCHHHHHHHH
T ss_pred ccHHHHHHHHccChhHHHHHHHHHHhhc--CCCchhhhhhhH
Confidence 3566777777775555677788888854 445666554443
No 353
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=20.43 E-value=1.1e+02 Score=20.17 Aligned_cols=48 Identities=6% Similarity=0.069 Sum_probs=33.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCchHHHHHHHHhc
Q 041561 59 EMIHGYAENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLVYAEVEIFNSM 115 (156)
Q Consensus 59 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~m 115 (156)
.+|.++...|++++|.++..++... +....+ ..+.+++.-|.-++..+
T Consensus 37 qvI~GLlql~~ydea~~yI~~~~~~--------~q~~~~-~~~i~~P~la~lLl~K~ 84 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEEMVID--------AKHESK-LSNLKTPHLAFDFLTFN 84 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHH-HHTTTCHHHHHHHHHGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHH-HHhCCCHHHHHHHHHHH
Confidence 5799999999999999999998642 111122 44566666666666655
No 354
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=20.37 E-value=76 Score=21.40 Aligned_cols=41 Identities=20% Similarity=0.138 Sum_probs=30.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCccHHHHHHHHHhhcCCCch
Q 041561 65 AENEYVEQAISLYKDIIASGVKHDGVTFVAILTPCSHSGLV 105 (156)
Q Consensus 65 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 105 (156)
.-.++-+.+.+++++....|..|.......++.+.-+.|+.
T Consensus 13 l~~~d~~~~~~~~~~al~~g~~~~~ii~~~l~p~m~~VG~l 53 (215)
T 3ezx_A 13 IVNQNVAGTPELCKEALAAGVPALDIITKGLSVGMKIVGDK 53 (215)
T ss_dssp HHTTCTTHHHHHHHHHHHTTCCHHHHHHHTHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888888888888777777777777666644
No 355
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=20.25 E-value=1.2e+02 Score=19.34 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHhCCCCchH
Q 041561 8 FTTVLSSCAKLSSLFLGRQILTRIVKDGYGNDIF 41 (156)
Q Consensus 8 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 41 (156)
|...-..+-..|+..+|.+||..-.+.+-.|-..
T Consensus 104 Ye~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 104 YIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 4455556667899999999999999988888653
No 356
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.21 E-value=65 Score=20.96 Aligned_cols=19 Identities=11% Similarity=-0.064 Sum_probs=10.3
Q ss_pred HHHhcCCCchHHHHHHHHH
Q 041561 12 LSSCAKLSSLFLGRQILTR 30 (156)
Q Consensus 12 l~~~~~~~~~~~a~~~~~~ 30 (156)
+...++.|+++.++.+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444555666655555543
No 357
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=20.03 E-value=2.6e+02 Score=20.43 Aligned_cols=27 Identities=7% Similarity=-0.093 Sum_probs=15.8
Q ss_pred HHHHHHhCCCCchHHHhHHHHHhhhcc
Q 041561 28 LTRIVKDGYGNDIFVGSAPINIYCNCG 54 (156)
Q Consensus 28 ~~~m~~~g~~~~~~~~~~li~~~~~~~ 54 (156)
.+-+.+.++++|......|++.+....
T Consensus 82 vevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 82 VDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 344455566666666666666655544
No 358
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=20.03 E-value=1.1e+02 Score=17.37 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHH-CCCCccHHHHHHHHHhhcCCCc-----hHHHHHHHHhc
Q 041561 70 VEQAISLYKDIIA-SGVKHDGVTFVAILTPCSHSGL-----VYAEVEIFNSM 115 (156)
Q Consensus 70 ~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m 115 (156)
.+++...|.+|.. .++.|+ .||...+.....-.+ ..+=+++|+..
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~DpRY~aL~~~eRK~~F~~y 66 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIVFDPRYLLLNPKERKQVFDQY 66 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCSGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCCccccCCHHHHHHHHHHH
Confidence 6889999999986 465554 577777766554332 34444555544
Done!