BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041562
(653 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 149 bits (377), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 158/575 (27%), Positives = 241/575 (41%), Gaps = 111/575 (19%)
Query: 112 GEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDS 170
G+F ++S+ +K++++SSN F G IP + Q L +++ N FTG I ++
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL---SLAENKFTGEIP--DFLSG 291
Query: 171 FC-SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP-DDIYTATSLEQLSLS 228
C ++ LDLS N F G VP GSCS L++ N +G LP D + L+ L LS
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351
Query: 229 FNHISGSIKNGIVNLT-SLRILELYSNSLTGLIPRDIGK--LTNLESLVLHNNXXXXXXX 285
FN SG + + NL+ SL L+L SN+ +G I ++ + L+ L L NN
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411
Query: 286 XXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTA 345
NC L L+L N+ +G++P +L S L
Sbjct: 412 PTLSNCSELVSLHLSFNYL-------------------------SGTIPSSLGSLSKLRD 446
Query: 346 VNLARNQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAIRILMGCKNLKVLIIPLNFMDE 405
+ L N LEG+I + LM K L+ LI+ N +
Sbjct: 447 LKLWLNMLEGEIP--------------------------QELMYVKTLETLILDFNDLTG 480
Query: 406 TMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLG 465
+P + + NL + L+ +L G++P WIG+L+ L +L LS N +G++P LG
Sbjct: 481 EIP-----SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535
Query: 466 NMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFK----GSNNFIG 521
+ SL +D + NL +G P + Y++ K G+ N +
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL- 594
Query: 522 EYKKILTFHEQYTWKTTX-------------XXXXXXXXXXXXXXXXXHNNFSGNIPDQI 568
E++ I + EQ +T +N SG IP +I
Sbjct: 595 EFQGIRS--EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 569 ------------------------SQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVA 604
L L +DLS N L G IP ++ L L+ +++
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 605 ENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQR 639
NNL G IP GQF+TFP + F NP LCG + R
Sbjct: 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 141/504 (27%), Positives = 209/504 (41%), Gaps = 78/504 (15%)
Query: 112 GEFPSSLSSNYIKIIDLSSNHFQGK--IPSTIFRLTQNLITFNVSNNSFTGLISWSAWVD 169
G+ L N ++++DLS+N G + + L +S N +G + S V+
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 201
Query: 170 SFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSF 229
+ LD+S+N F+ +P LG CS L+ N L+G I T T L+ L++S
Sbjct: 202 ----LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 230 NHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDI-GKLTNLESLVLHNNXXXXXXXXXX 288
N G I + L SL+ L L N TG IP + G L L L N
Sbjct: 257 NQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 289 KNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITL-NSCKSLTAVN 347
+C L L L SN F G++ + + L+VLDL N F+G LP +L N SL ++
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 348 LARNQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAIR-ILMGCKNLKVLIIPLNFMDET 406
L+ N G I P + TG I L C L L + N++ T
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 407 MPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGN 466
+P +S L+ L L L+G++P + +K L+ L L FN LTG +P L N
Sbjct: 434 IP-----SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 467 MSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKI 526
++L I SNN ++GE PK RL L ++ K SNN
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENL----------------AILKLSNN-------- 524
Query: 527 LTFHEQYTWKTTXXXXXXXXXXXXXXXXXXHNNFSGNIPDQISQLTNLERMDLSKNHLSG 586
+FSGNIP ++ +L +DL+ N +G
Sbjct: 525 --------------------------------SFSGNIPAELGDCRSLIWLDLNTNLFNG 552
Query: 587 EIPVSLKRLHFLSAFNVAENNLRG 610
IP ++ F + +A N + G
Sbjct: 553 TIPAAM----FKQSGKIAANFIAG 572
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 129/456 (28%), Positives = 181/456 (39%), Gaps = 110/456 (24%)
Query: 172 CSIRHLDLSNNRFTGPVPL--GLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSF 229
S+ LDLS N +GPV LGSCS LK N L P
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFP---------------- 141
Query: 230 NHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXK 289
+SG +K L SL +L+L +NS++G N+ VL +
Sbjct: 142 GKVSGGLK-----LNSLEVLDLSANSISG---------ANVVGWVLSDG----------- 176
Query: 290 NCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLA 349
C L L + N GD+ V S + L LD+ SN F+ +P L C +L ++++
Sbjct: 177 -CGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231
Query: 350 RNQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAIRILMGCKNLKVLIIPLNFMDETMPD 409
N+L G S R + C LK+L I N +P
Sbjct: 232 GNKLSGDFS--------------------------RAISTCTELKLLNISSNQFVGPIP- 264
Query: 410 NDRLTSANGFKNLQVLGLAECKLKGQVPSWI-GKLKKLQVLDLSFNQLTGSVPRFLGNMS 468
K+LQ L LAE K G++P ++ G L LDLS N G+VP F G+ S
Sbjct: 265 ------PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 469 SLFHIDFSNNLISGEFPKE-FCRLPAL----------TPEQDKNKANESYLEFSLFKGSN 517
L + S+N SGE P + ++ L + E ++ N S +L SN
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 518 NFIGEYKKILTFHEQYTWKTTXXXXXXXXXXXXXXXXXXHNNFSGNIPDQISQLTNLERM 577
NF G L + + T + +N F+G IP +S + L +
Sbjct: 379 NFSGPILPNLCQNPKNTLQE---------------LYLQNNGFTGKIPPTLSNCSELVSL 423
Query: 578 DLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP 613
LS N+LSG IP SL L L + N L G IP
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 158/575 (27%), Positives = 241/575 (41%), Gaps = 111/575 (19%)
Query: 112 GEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDS 170
G+F ++S+ +K++++SSN F G IP + Q L +++ N FTG I ++
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL---SLAENKFTGEIP--DFLSG 288
Query: 171 FC-SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP-DDIYTATSLEQLSLS 228
C ++ LDLS N F G VP GSCS L++ N +G LP D + L+ L LS
Sbjct: 289 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 348
Query: 229 FNHISGSIKNGIVNLT-SLRILELYSNSLTGLIPRDIGK--LTNLESLVLHNNXXXXXXX 285
FN SG + + NL+ SL L+L SN+ +G I ++ + L+ L L NN
Sbjct: 349 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 408
Query: 286 XXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTA 345
NC L L+L N+ +G++P +L S L
Sbjct: 409 PTLSNCSELVSLHLSFNYL-------------------------SGTIPSSLGSLSKLRD 443
Query: 346 VNLARNQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAIRILMGCKNLKVLIIPLNFMDE 405
+ L N LEG+I + LM K L+ LI+ N +
Sbjct: 444 LKLWLNMLEGEIP--------------------------QELMYVKTLETLILDFNDLTG 477
Query: 406 TMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLG 465
+P + + NL + L+ +L G++P WIG+L+ L +L LS N +G++P LG
Sbjct: 478 EIP-----SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 532
Query: 466 NMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFK----GSNNFIG 521
+ SL +D + NL +G P + Y++ K G+ N +
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL- 591
Query: 522 EYKKILTFHEQYTWKTTX-------------XXXXXXXXXXXXXXXXXHNNFSGNIPDQI 568
E++ I + EQ +T +N SG IP +I
Sbjct: 592 EFQGIRS--EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 569 ------------------------SQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVA 604
L L +DLS N L G IP ++ L L+ +++
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 605 ENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQR 639
NNL G IP GQF+TFP + F NP LCG + R
Sbjct: 710 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 141/504 (27%), Positives = 209/504 (41%), Gaps = 78/504 (15%)
Query: 112 GEFPSSLSSNYIKIIDLSSNHFQGK--IPSTIFRLTQNLITFNVSNNSFTGLISWSAWVD 169
G+ L N ++++DLS+N G + + L +S N +G + S V+
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 198
Query: 170 SFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSF 229
+ LD+S+N F+ +P LG CS L+ N L+G I T T L+ L++S
Sbjct: 199 ----LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 230 NHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDI-GKLTNLESLVLHNNXXXXXXXXXX 288
N G I + L SL+ L L N TG IP + G L L L N
Sbjct: 254 NQFVGPIP--PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 289 KNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITL-NSCKSLTAVN 347
+C L L L SN F G++ + + L+VLDL N F+G LP +L N SL ++
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Query: 348 LARNQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAIR-ILMGCKNLKVLIIPLNFMDET 406
L+ N G I P + TG I L C L L + N++ T
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQN-NGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Query: 407 MPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGN 466
+P +S L+ L L L+G++P + +K L+ L L FN LTG +P L N
Sbjct: 431 IP-----SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 467 MSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKI 526
++L I SNN ++GE PK RL L ++ K SNN
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENL----------------AILKLSNN-------- 521
Query: 527 LTFHEQYTWKTTXXXXXXXXXXXXXXXXXXHNNFSGNIPDQISQLTNLERMDLSKNHLSG 586
+FSGNIP ++ +L +DL+ N +G
Sbjct: 522 --------------------------------SFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 587 EIPVSLKRLHFLSAFNVAENNLRG 610
IP ++ F + +A N + G
Sbjct: 550 TIPAAM----FKQSGKIAANFIAG 569
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 129/456 (28%), Positives = 181/456 (39%), Gaps = 110/456 (24%)
Query: 172 CSIRHLDLSNNRFTGPVPL--GLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSF 229
S+ LDLS N +GPV LGSCS LK N L P
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFP---------------- 138
Query: 230 NHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXK 289
+SG +K L SL +L+L +NS++G N+ VL +
Sbjct: 139 GKVSGGLK-----LNSLEVLDLSANSISG---------ANVVGWVLSDG----------- 173
Query: 290 NCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLA 349
C L L + N GD+ V S + L LD+ SN F+ +P L C +L ++++
Sbjct: 174 -CGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 228
Query: 350 RNQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAIRILMGCKNLKVLIIPLNFMDETMPD 409
N+L G S R + C LK+L I N +P
Sbjct: 229 GNKLSGDFS--------------------------RAISTCTELKLLNISSNQFVGPIP- 261
Query: 410 NDRLTSANGFKNLQVLGLAECKLKGQVPSWI-GKLKKLQVLDLSFNQLTGSVPRFLGNMS 468
K+LQ L LAE K G++P ++ G L LDLS N G+VP F G+ S
Sbjct: 262 ------PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 469 SLFHIDFSNNLISGEFPKE-FCRLPAL----------TPEQDKNKANESYLEFSLFKGSN 517
L + S+N SGE P + ++ L + E ++ N S +L SN
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 518 NFIGEYKKILTFHEQYTWKTTXXXXXXXXXXXXXXXXXXHNNFSGNIPDQISQLTNLERM 577
NF G L + + T + +N F+G IP +S + L +
Sbjct: 376 NFSGPILPNLCQNPKNTLQE---------------LYLQNNGFTGKIPPTLSNCSELVSL 420
Query: 578 DLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP 613
LS N+LSG IP SL L L + N L G IP
Sbjct: 421 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 94/222 (42%), Gaps = 25/222 (11%)
Query: 422 LQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481
L L + + G +P ++ ++K L LD S+N L+G++P + ++ +L I F N IS
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 482 GEFPKEFCRLPALTPEQD--------KNKANESYLEFSLFKGSNNFIGEYKKILTFHEQY 533
G P + L K + L + S N + +L ++
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 534 TWKTTXXXXXXXXXXXXXXXXXXHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLK 593
T K N+ + ++ ++ NL +DL N + G +P L
Sbjct: 223 TQKI----------------HLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 594 RLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGA 635
+L FL + NV+ NNL G IP GG F S++ N LCG+
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS 307
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 138/339 (40%), Gaps = 62/339 (18%)
Query: 32 QACNQIDQDSLLSLGFNISSPGL--NWSSSTDCC--LWEGIKCDANG---RVSHLWLPWK 84
+ CN D+ +LL + ++ +P +W +TDCC W G+ CD + RV++L L
Sbjct: 1 ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL 60
Query: 85 GLTGTISLSIGXXXXXXXXXXXXXXXXGEFPSSLSS-NYIKIIDLSS-NHFQGKIPSTIF 142
L + PSSL++ Y+ + + N+ G IP I
Sbjct: 61 NLPKPYPI----------------------PSSLANLPYLNFLYIGGINNLVGPIPPAIA 98
Query: 143 RLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFR 202
+LTQ + +L +++ +G +P L L T
Sbjct: 99 KLTQ---------------------------LHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 203 AGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRI-LELYSNSLTGLIP 261
+N L+G+LP I + +L ++ N ISG+I + + + L + + N LTG IP
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Query: 262 RDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRV 321
L NL + L N + N ++L N D+ S L
Sbjct: 192 PTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK--NLNG 248
Query: 322 LDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG 360
LDL +N G+LP L K L ++N++ N L G+I G
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/325 (24%), Positives = 126/325 (38%), Gaps = 74/325 (22%)
Query: 167 WVDSFCS-------IRHLDLSNNRFTGPVPL--GLGSCSRLK-TFRAGFNYLTGSLPDDI 216
W+ C + +LDLS P P+ L + L + G N L G +P I
Sbjct: 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI 97
Query: 217 YTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLH 276
T L L ++ ++SG+I + + + +L L+ N+L+G +P I L NL +
Sbjct: 98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157
Query: 277 NNXXXXXXXXXXKNCINLTLLNLQSNFFEGDI--SVFNFSTLLKLRVLDLGSNLFTGSLP 334
N G I S +FS L + + N TG +P
Sbjct: 158 GNR------------------------ISGAIPDSYGSFSKLFT--SMTISRNRLTGKIP 191
Query: 335 ITLNSCKSLTAVNLARNQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAIRILMGC-KNL 393
T + +L V+L+RN LEG S +L G KN
Sbjct: 192 PTFANL-NLAFVDLSRNMLEGDAS---------------------------VLFGSDKNT 223
Query: 394 KVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSF 453
+ + + N + L KNL L L ++ G +P + +LK L L++SF
Sbjct: 224 QKIHLAKNSLAF------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 454 NQLTGSVPRFLGNMSSLFHIDFSNN 478
N L G +P+ GN+ ++NN
Sbjct: 278 NNLCGEIPQG-GNLQRFDVSAYANN 301
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 70/180 (38%), Gaps = 58/180 (32%)
Query: 432 LKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRL 491
L G +P I KL +L L ++ ++G++P FL + +L +DFS N +SG P L
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 492 PALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTXXXXXXXXXXXXX 551
P N +G +TF
Sbjct: 149 P-------------------------NLVG-----ITFDG-------------------- 158
Query: 552 XXXXXHNNFSGNIPDQISQLTNL-ERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRG 610
N SG IPD + L M +S+N L+G+IP + L+ L+ +++ N L G
Sbjct: 159 ------NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 48/121 (39%), Gaps = 26/121 (21%)
Query: 503 ANESYLEFSLFKGSNNFIG----EYKKILTFHEQYTWKTTXXXXXXXXXXXXXXXXXXHN 558
AN YL F G NN +G K+ H Y H
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI---------------------THT 111
Query: 559 NFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP-SGGQ 617
N SG IPD +SQ+ L +D S N LSG +P S+ L L N + G+IP S G
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 618 F 618
F
Sbjct: 172 F 172
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 101/253 (39%), Gaps = 36/253 (14%)
Query: 236 IKNGIVNLTSLRILELYS-NSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINL 294
I + + NL L L + N+L G IP I KLT L L + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 295 TLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS-CKSLTAVNLARNQL 353
L+ N G + + S+L L + N +G++P + S K T++ ++RN+L
Sbjct: 128 VTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 354 EGQISPGIVAXXXXXXXXXXXXXXTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRL 413
G+I P NL + + L+ M + D
Sbjct: 187 TGKIPPTFA-----------------------------NLNLAFVDLS---RNMLEGDAS 214
Query: 414 TSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHI 473
KN Q + LA+ L + +G K L LDL N++ G++P+ L + L +
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 474 DFSNNLISGEFPK 486
+ S N + GE P+
Sbjct: 274 NVSFNNLCGEIPQ 286
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 86/194 (44%), Gaps = 8/194 (4%)
Query: 114 FPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCS 173
PS++ ++ K +DL SN +PS F L +++N L + +
Sbjct: 31 IPSNIPAD-TKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPA--GIFKELKN 86
Query: 174 IRHLDLSNNRFTGPVPLGL-GSCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNH 231
+ L +++N+ +P+G+ L R N L SLP ++ + T L LSL +N
Sbjct: 87 LETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNE 144
Query: 232 ISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNC 291
+ K LTSL+ L LY+N L + KLT L++L L NN +
Sbjct: 145 LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204
Query: 292 INLTLLNLQSNFFE 305
L +L LQ N ++
Sbjct: 205 EKLKMLQLQENPWD 218
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 4/149 (2%)
Query: 130 SNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP 189
SN KIP I + T L ++NN FT ++ + +R ++ SNN+ T
Sbjct: 19 SNQKLNKIPEHIPQYTAEL---RLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEE 74
Query: 190 LGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL 249
S + N L SL+ L L N I+ + + L+S+R+L
Sbjct: 75 GAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134
Query: 250 ELYSNSLTGLIPRDIGKLTNLESLVLHNN 278
LY N +T + P L +L +L L N
Sbjct: 135 SLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNX 279
TSL+QLS S N ++ + NLT+L L++ SN ++ + + KLTNLESL+ NN
Sbjct: 151 TSLQQLSFSSNQVTD--LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQ 206
Query: 280 XXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS 339
NL L+L N + DI ++L L LDL +N + P L+
Sbjct: 207 ISDITPLGI--LTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNLAP--LSG 259
Query: 340 CKSLTAVNLARNQLEGQISP 359
LT + L NQ+ ISP
Sbjct: 260 LTKLTELKLGANQISN-ISP 278
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNX 279
TSL+QLS S N ++ + NLT+L L++ SN ++ + + KLTNLESL+ NN
Sbjct: 151 TSLQQLSFSSNQVTD--LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQ 206
Query: 280 XXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS 339
NL L+L N + DI ++L L LDL +N + P L+
Sbjct: 207 ISDITPLGI--LTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNLAP--LSG 259
Query: 340 CKSLTAVNLARNQLEGQISP 359
LT + L NQ+ ISP
Sbjct: 260 LTKLTELKLGANQISN-ISP 278
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNX 279
TSL+QL+ S N ++ + NLT+L L++ SN ++ + + KLTNLESL+ NN
Sbjct: 151 TSLQQLNFSSNQVTD--LKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQ 206
Query: 280 XXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS 339
NL L+L N + DI ++L L LDL +N + P L+
Sbjct: 207 ISDITPLGI--LTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNLAP--LSG 259
Query: 340 CKSLTAVNLARNQLEGQISP 359
LT + L NQ+ ISP
Sbjct: 260 LTKLTELKLGANQISN-ISP 278
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 169 DSFCSIRHLDLSNNRFTGPVPLGL-GSCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLS 226
D +++ L L N+ +P G+ + L N L SLP ++ T+L +L
Sbjct: 106 DKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELD 163
Query: 227 LSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNN 278
LS+N + S+ G+ + LT L+ L LY N L + +LT+L+ + LH+N
Sbjct: 164 LSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
Query: 239 GIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLN 298
+ LT+L L L N L L KLTNL+ LVL N NLT LN
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 299 LQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE 354
L N + + F L L LDL N + L + L +NQL+
Sbjct: 140 LAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 392 NLKVLIIPLNFMDETMPDN--DRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVL 449
NLK L++ N + +++PD D+LT NL L LA +L+ KL L L
Sbjct: 110 NLKELVLVENQL-QSLPDGVFDKLT------NLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 450 DLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPAL 494
DLS+NQL ++ L + N + F RL +L
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 220 TSLEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNN 278
T+L L L+ N + S+ NG+ + LT+L+ L L N L L KLTNL L L +N
Sbjct: 85 TNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 279 XXXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSN 327
NLT L+L N + + F L +L+ L L N
Sbjct: 144 QLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQN 191
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 25/126 (19%)
Query: 147 NLITFNVSNNSFT------------GLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGS 194
NL FN+S N F L A + + ++R LDLS+NR T +P LGS
Sbjct: 233 NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGS 291
Query: 195 CSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSN 254
C +LK F F+ + +LP + +L+ L + N + L+IL
Sbjct: 292 CFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF---------LKILT--EK 339
Query: 255 SLTGLI 260
S+TGLI
Sbjct: 340 SVTGLI 345
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 16/96 (16%)
Query: 410 NDRLTSANGFKNLQVLGLAECKLK--------------GQVPSWIGKLKKLQVLDLSFNQ 455
+D+L A NLQ+ ++ K ++P+ I L L+VLDLS N+
Sbjct: 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR 281
Query: 456 LTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRL 491
LT S+P LG+ L + F +N+++ P EF L
Sbjct: 282 LT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNL 315
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH 231
+++ LDLS N+ T L +C+ L+ + + D Y+ SLE L LS NH
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85
Query: 232 ISGSIKNGIVNLTSLRILELYSN-----SLTGLIPRDIGKLTNLESLVLHN 277
+S + L+SL+ L L N +T L P LTNL++L + N
Sbjct: 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP----NLTNLQTLRIGN 132
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH 231
+++ LDLS N+ T L +C+ L+ + + D Y+ SLE L LS NH
Sbjct: 52 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 111
Query: 232 ISGSIKNGIVNLTSLRILELYSN-----SLTGLIPRDIGKLTNLESLVLHN 277
+S + L+SL+ L L N +T L P LTNL++L + N
Sbjct: 112 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP----NLTNLQTLRIGN 158
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 65/171 (38%), Gaps = 34/171 (19%)
Query: 446 LQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANE 505
L+ LDLSFN + FLG + L H+DF Q N
Sbjct: 375 LKYLDLSFNGVITMSSNFLG-LEQLEHLDF----------------------QHSNLKQM 411
Query: 506 SYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTXXXXXXXXXXXXXXXXXXHNNFSGN-I 564
S EFS+F N I Y I H + + N+F N +
Sbjct: 412 S--EFSVFLSLRNLI--YLDISHTHTRVAFNGIFNGLSSLEVLKMAG-----NSFQENFL 462
Query: 565 PDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG 615
PD ++L NL +DLS+ L P + L L N+A N L+ S+P G
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDG 512
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 386 ILMGCKNLKVLIIPLN-FMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLK 444
I G +L+VL + N F + +PD +NL L L++C+L+ P+ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPD-----IFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 445 KLQVLDLSFNQLTGSVP 461
LQVL+++ NQL SVP
Sbjct: 495 SLQVLNMASNQLK-SVP 510
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 413 LTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG-SVPRFLGNMSSLF 471
L + +G +LQ L E L IG LK L+ L+++ N + +P + N+++L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 472 HIDFSNNLI 480
H+D S+N I
Sbjct: 153 HLDLSSNKI 161
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 3/166 (1%)
Query: 190 LGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL 249
+ L S L R G ++ G + TSL+ L LSFN + ++ + + L L L
Sbjct: 344 VDLPSLEFLDLSRNGLSF-KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 401
Query: 250 ELYSNSLTGLIPRDIG-KLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEGDI 308
+ ++L + + L NL L + + +L +L + N F+ +
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 309 SVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE 354
F+ L L LDL P NS SL +N+A NQL+
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 12/168 (7%)
Query: 116 SSLSSNYIKIIDLSSNHFQGKIP-STIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSI 174
S + +K +DLS F G I S+ F + L + +++ + +S ++ S ++
Sbjct: 368 SDFGTTSLKYLDLS---FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-SLRNL 423
Query: 175 RHLDLSNNR----FTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFN 230
+LD+S+ F G + GL S LK AG ++ LPD +L L LS
Sbjct: 424 IYLDISHTHTRVAFNG-IFNGLSSLEVLKM--AGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 231 HISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNN 278
+ +L+SL++L + SN L + +LT+L+ + LH N
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 561 SGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLH 596
S +P+ S LTNLE +DLS N + L+ LH
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 211 SLPDDIYTA-TSLEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIPRDIGKLT 268
SLP+ ++ T L++L+L+ N + S+ +G+ + LT L+ L LY N L + +LT
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
Query: 269 NLESLVLHNN 278
+L+ + LH+N
Sbjct: 149 SLQYIWLHDN 158
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 28/164 (17%)
Query: 123 IKIIDLSSNHFQGKIPSTIFRLT-----QNLITFNVSNNSFTGLISWSAWVDSFCSIRHL 177
I +DLS N F+ + F Q+LI N N SF
Sbjct: 214 ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG-----------SSFGHTNFK 262
Query: 178 DLSNNRFTGPVPLGLGSC--SRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNHISG 234
D N F G G+ +C S+ K F +L +++ T LEQL+L+ N I+
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIF---------ALLKSVFSHFTDLEQLTLAQNEINK 313
Query: 235 SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNN 278
N LT L+ L L +N L + +LT+L+ + LH N
Sbjct: 314 IDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 357
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 417 NGFKNLQVLGLAECKLKGQVPS--WIGKLKKLQVLDLSFNQLTGSVPR-FLGNMSSLFHI 473
NG NL+VL L +C L G V S + L L++L L N + P F NM +
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159
Query: 474 DFSNNLI 480
D + N +
Sbjct: 160 DLTFNKV 166
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%)
Query: 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHI 232
+++ LDLSNNR T L C L+ N + D + SLE L LS+N++
Sbjct: 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 233 SGSIKNGIVNLTSLRILELYSN 254
S + L+SL L L N
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGN 134
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 26/128 (20%)
Query: 176 HLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLT--GSLPDDIYTATSLEQLSLSFNHIS 233
HLD SNN T V G + L+T N L + + SL+QL +S N +S
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 234 GSIKNG---------IVNLTS--------------LRILELYSNSLTGLIPRDIGKLTNL 270
K G +N++S +++L+L+SN + IP+ + KL L
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEAL 446
Query: 271 ESLVLHNN 278
+ L + +N
Sbjct: 447 QELNVASN 454
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 7/155 (4%)
Query: 126 IDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFT 185
+D S+N + LT+ L T + N L + S++ LD+S N +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTE-LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Query: 186 GPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTAT--SLEQLSLSFNHISGSIKNGIVNL 243
G CS K+ N + L D I+ ++ L L N I SI +V L
Sbjct: 388 --YDEKKGDCSWTKSL-LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKL 443
Query: 244 TSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNN 278
+L+ L + SN L + +LT+L+ + LH N
Sbjct: 444 EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNX 279
TSL+QLS F + +K + NLT+L L++ SN ++ + + KLTNLESL+ NN
Sbjct: 156 TSLQQLS--FGNQVTDLK-PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQ 210
Query: 280 XXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS 339
NL L+L N + DI ++L L LDL +N + P L+
Sbjct: 211 ISDITPLGI--LTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNLAP--LSG 263
Query: 340 CKSLTAVNLARNQLEGQISP 359
LT + L NQ+ ISP
Sbjct: 264 LTKLTELKLGANQISN-ISP 282
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 69/140 (49%), Gaps = 13/140 (9%)
Query: 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNX 279
TSL+QLS F + +K + NLT+L L++ SN ++ + + KLTNLESL+ NN
Sbjct: 155 TSLQQLS--FGNQVTDLK-PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQ 209
Query: 280 XXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS 339
NL L+L N + DI ++L L LDL +N + P L+
Sbjct: 210 ISDITPLGI--LTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNLAP--LSG 262
Query: 340 CKSLTAVNLARNQLEGQISP 359
LT + L NQ+ ISP
Sbjct: 263 LTKLTELKLGANQISN-ISP 281
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%)
Query: 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHI 232
+++ LDLSNNR T L C L+ N + D + SLE L LS+N++
Sbjct: 27 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 86
Query: 233 SGSIKNGIVNLTSLRILELYSN 254
S + L+SL L L N
Sbjct: 87 SNLSSSWFKPLSSLTFLNLLGN 108
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 3/133 (2%)
Query: 220 TSLEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNN 278
T+L L L+ N + S+ NG+ + LT+L+ L L N L L KLTNL L L++N
Sbjct: 85 TNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 279 XXXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLN 338
NLT L+L +N + + F L +L+ L L N +
Sbjct: 144 QLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKSVPDGVFD 202
Query: 339 SCKSLTAVNLARN 351
SLT + L N
Sbjct: 203 RLTSLTHIWLLNN 215
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 1/116 (0%)
Query: 239 GIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLN 298
+ LT+L L L N L L KLTNL+ LVL N NLT L
Sbjct: 80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 299 LQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE 354
L N + + F L L LDL +N + L ++L NQL+
Sbjct: 140 LYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 265 GKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDL 324
G TN + L LH+N + INL L L SN G + V F +L +L VLDL
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDL 95
Query: 325 GSNLFT 330
G+N T
Sbjct: 96 GTNQLT 101
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 3/103 (2%)
Query: 177 LDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNHISGS 235
L L +N+ T P S LK G N L G+LP ++ + T L L L N ++
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 236 IKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNN 278
L L+ L + N LT L PR I +LT+L L L N
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQN 145
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 80/364 (21%), Positives = 141/364 (38%), Gaps = 29/364 (7%)
Query: 145 TQNLITFNVSNNSFTGLIS---WSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTF 201
TQNL+ F GL + S W+ +F + D+S F G + + S + K
Sbjct: 212 TQNLLVI------FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK-- 263
Query: 202 RAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIP 261
+Y + + + L++L L+ H+S + +G+V L++L+ L L +N L
Sbjct: 264 ----HYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ 318
Query: 262 RDIGKLTNLESLVLHNNXXXXXXXXX-XKNCINLTLLNLQSNFFE-GDISVFNFSTLLKL 319
+L L + N +N NL L+L + E D L L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378
Query: 320 RVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVAXXXXXXXXXXXXXXTN 379
+ L+L N C L ++LA +L+ + + +
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438
Query: 380 ITGAIRILMGCKNLKVLIIPLNFMDETMPDND--RLTSANGFKNLQVLGLAECKLKGQVP 437
I+ ++ G L+ LN P + + S L++L L+ C L
Sbjct: 439 ISSE-QLFDGLPALQ----HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493
Query: 438 SWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPE 497
LK + +DLS N+LT S L ++ ++ ++ ++N IS P LP L+ +
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPS---LLPILSQQ 549
Query: 498 QDKN 501
+ N
Sbjct: 550 RTIN 553
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 98/233 (42%), Gaps = 39/233 (16%)
Query: 147 NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLG-LGSCSRLKTFRAGF 205
NL N SNN T + + + + + ++NN+ PL L + + L F
Sbjct: 64 NLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 206 NYLTGSLPDDIYTATSLEQLSLSFNHISG-SIKNGI------------------VNLTSL 246
+ D + T+L +L LS N IS S +G+ NLT+L
Sbjct: 120 TDI-----DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTL 174
Query: 247 RILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEG 306
L++ SN ++ + + KLTNLESL+ NN NL L+L N +
Sbjct: 175 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK- 229
Query: 307 DISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISP 359
DI ++L L LDL +N + P L+ LT + L NQ+ ISP
Sbjct: 230 DIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP 277
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 85/220 (38%), Gaps = 48/220 (21%)
Query: 423 QVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISG 482
QV L +L + + L L ++ S NQLT P L N++ L I +NN I+
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 99
Query: 483 EFP-KEFCRLPALT------PEQD--KNKANESYLEFSLFKGSNNFIGEYKKI--LTFHE 531
P L LT + D KN N + LE S +N I + + LT +
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS-----SNTISDISALSGLTSLQ 154
Query: 532 QYTWKTTXXXXXXXXXXXXXXXXXXHNNFSGNIPD--QISQLTNLERMDLSKNHLSGEIP 589
Q NF + D ++ LT LER+D+S N +S +I
Sbjct: 155 QL-------------------------NFGNQVTDLKPLANLTTLERLDISSNKVS-DIS 188
Query: 590 VSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGN 629
V L +L L + +A NN I G S GN
Sbjct: 189 V-LAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGN 226
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 98/233 (42%), Gaps = 39/233 (16%)
Query: 147 NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLG-LGSCSRLKTFRAGF 205
NL N SNN T + + + + + ++NN+ PL L + + L F
Sbjct: 64 NLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQI 119
Query: 206 NYLTGSLPDDIYTATSLEQLSLSFNHISG-SIKNGI------------------VNLTSL 246
+ D + T+L +L LS N IS S +G+ NLT+L
Sbjct: 120 TDI-----DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTL 174
Query: 247 RILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEG 306
L++ SN ++ + + KLTNLESL+ NN NL L+L N +
Sbjct: 175 ERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLK- 229
Query: 307 DISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISP 359
DI ++L L LDL +N + P L+ LT + L NQ+ ISP
Sbjct: 230 DIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP 277
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 85/220 (38%), Gaps = 48/220 (21%)
Query: 423 QVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISG 482
QV L +L + + L L ++ S NQLT P L N++ L I +NN I+
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD 99
Query: 483 EFP-KEFCRLPALT------PEQD--KNKANESYLEFSLFKGSNNFIGEYKKI--LTFHE 531
P L LT + D KN N + LE S +N I + + LT +
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS-----SNTISDISALSGLTSLQ 154
Query: 532 QYTWKTTXXXXXXXXXXXXXXXXXXHNNFSGNIPD--QISQLTNLERMDLSKNHLSGEIP 589
Q NF + D ++ LT LER+D+S N +S +I
Sbjct: 155 QL-------------------------NFGNQVTDLKPLANLTTLERLDISSNKVS-DIS 188
Query: 590 VSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGN 629
V L +L L + +A NN I G S GN
Sbjct: 189 V-LAKLTNLESL-IATNNQISDITPLGILTNLDELSLNGN 226
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 386 ILMGCKNLKVLIIPLN-FMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLK 444
I G +L+VL + N F + +PD +NL L L++C+L+ P+ L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPD-----IFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199
Query: 445 KLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPA 493
LQVL++S N ++SL +D+S N I +E P+
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 248
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 64/178 (35%), Gaps = 40/178 (22%)
Query: 446 LQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANE 505
L+ LDLSFN + FLG + L H+DF Q N
Sbjct: 80 LKYLDLSFNGVITMSSNFLG-LEQLEHLDF----------------------QHSNLKQM 116
Query: 506 SYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTXXXXXXXXXXXXXXXXXXHNNFSGN-I 564
S EFS+F N I Y I H + + N+F N +
Sbjct: 117 S--EFSVFLSLRNLI--YLDISHTHTRVAFNGIFNGLSSLEVLKMAG-----NSFQENFL 167
Query: 565 PDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFP 622
PD ++L NL +DLS+ L P + L L N++ NN DTFP
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-------LDTFP 218
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 103/263 (39%), Gaps = 8/263 (3%)
Query: 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNX 279
T +++L L+ H++G + +GI + SL+ L L +NS L + +L L + N
Sbjct: 277 TRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNM 335
Query: 280 XXXXXXXX-XKNCINLTLLNL-QSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITL 337
+ NL L+L S+ D L L+ L+L N G
Sbjct: 336 RKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAF 395
Query: 338 NSCKSLTAVNLARNQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAIRILMGCKNLKVLI 397
C L +++A L + +P T +L G ++L+ L
Sbjct: 396 KECPQLELLDVAFTHLHVK-APHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLN 454
Query: 398 IPLN-FMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQL 456
+ N F D ++ + L L++L L+ C L L+ + LDLS N L
Sbjct: 455 LQGNSFQDGSISKTNLLQMVGS---LEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSL 511
Query: 457 TGSVPRFLGNMSSLFHIDFSNNL 479
TG L ++ L+ SNN+
Sbjct: 512 TGDSMDALSHLKGLYLNMASNNI 534
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 258 GLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLL 317
GL +G + + LH N + C NLT+L L SN I F+ L
Sbjct: 22 GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLA 80
Query: 318 KLRVLDLGSNLFTGSL-PITLNSCKSLTAVNLARNQLEGQISPGI 361
L LDL N S+ P T + L ++L R L+ ++ PG+
Sbjct: 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL 124
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Query: 258 GLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLL 317
GL +G + + LH N + C NLT+L L SN I F+ L
Sbjct: 21 GLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLA 79
Query: 318 KLRVLDLGSNLFTGSL-PITLNSCKSLTAVNLARNQLEGQISPGI 361
L LDL N S+ P T + L ++L R L+ ++ PG+
Sbjct: 80 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGL 123
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 166 AWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQL 225
A + + + +HL LS N L L+ G N L + + A +LE+L
Sbjct: 43 ATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEEL 99
Query: 226 SLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRD-IGKLTNLESLVLHNN 278
+S+N I+ +GI L +LR+L + +N +T D + L LE L+L N
Sbjct: 100 WISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 151
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 386 ILMGCKNLKVLIIPLN-FMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLK 444
I G +L+VL + N F + +PD +NL L L++C+L+ P+ L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPD-----IFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 445 KLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPA 493
LQVL++S N ++SL +D+S N I +E P+
Sbjct: 495 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 413 LTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG-SVPRFLGNMSSLF 471
L + +G +LQ L E L IG LK L+ L+++ N + +P + N+++L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 472 HIDFSNNLI 480
H+D S+N I
Sbjct: 153 HLDLSSNKI 161
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 64/178 (35%), Gaps = 40/178 (22%)
Query: 446 LQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANE 505
L+ LDLSFN + FLG + L H+DF Q N
Sbjct: 375 LKYLDLSFNGVITMSSNFLG-LEQLEHLDF----------------------QHSNLKQM 411
Query: 506 SYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTXXXXXXXXXXXXXXXXXXHNNFSGN-I 564
S EFS+F N I Y I H + + N+F N +
Sbjct: 412 S--EFSVFLSLRNLI--YLDISHTHTRVAFNGIFNGLSSLEVLKMAG-----NSFQENFL 462
Query: 565 PDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFP 622
PD ++L NL +DLS+ L P + L L N++ NN DTFP
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-------LDTFP 513
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 561 SGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLH 596
S +P+ S LTNLE +DLS N + L+ LH
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 166 AWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQL 225
A + + + +HL LS N L L+ G N L + + A +LE+L
Sbjct: 42 ATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEEL 98
Query: 226 SLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRD-IGKLTNLESLVLHNN 278
+S+N I+ +GI L +LR+L + +N +T D + L LE L+L N
Sbjct: 99 WISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 386 ILMGCKNLKVLIIPLN-FMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLK 444
I G +L+VL + N F + +PD +NL L L++C+L+ P+ L
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPD-----IFTELRNLTFLDLSQCQLEQLSPTAFNSLS 518
Query: 445 KLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPA 493
LQVL++S N ++SL +D+S N I +E P+
Sbjct: 519 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 567
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 413 LTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG-SVPRFLGNMSSLF 471
L + +G +LQ L E L IG LK L+ L+++ N + +P + N+++L
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 176
Query: 472 HIDFSNNLI 480
H+D S+N I
Sbjct: 177 HLDLSSNKI 185
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 64/178 (35%), Gaps = 40/178 (22%)
Query: 446 LQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANE 505
L+ LDLSFN + FLG + L H+DF Q N
Sbjct: 399 LKYLDLSFNGVITMSSNFLG-LEQLEHLDF----------------------QHSNLKQM 435
Query: 506 SYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTXXXXXXXXXXXXXXXXXXHNNFSGN-I 564
S EFS+F N I Y I H + + N+F N +
Sbjct: 436 S--EFSVFLSLRNLI--YLDISHTHTRVAFNGIFNGLSSLEVLKMAG-----NSFQENFL 486
Query: 565 PDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFP 622
PD ++L NL +DLS+ L P + L L N++ NN DTFP
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-------LDTFP 537
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 561 SGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLH 596
S +P+ S LTNLE +DLS N + L+ LH
Sbjct: 162 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 197
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 413 LTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG-SVPRFLGNMSSLF 471
L + +G +LQ L E L IG LK L+ L+++ N + +P + N+++L
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 472 HIDFSNNLISGEF 484
H+D S+N I +
Sbjct: 154 HLDLSSNKIQSIY 166
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 561 SGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLH 596
S +P+ S LTNLE +DLS N + L+ LH
Sbjct: 139 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 174
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 413 LTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG-SVPRFLGNMSSLF 471
L + +G +LQ L E L IG LK L+ L+++ N + +P + N+++L
Sbjct: 95 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 472 HIDFSNNLISGEF 484
H+D S+N I +
Sbjct: 155 HLDLSSNKIQSIY 167
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 561 SGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLH 596
S +P+ S LTNLE +DLS N + L+ LH
Sbjct: 140 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 175
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 413 LTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG-SVPRFLGNMSSLF 471
L + +G +LQ L E L IG LK L+ L+++ N + +P + N+++L
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 472 HIDFSNNLISGEF 484
H+D S+N I +
Sbjct: 153 HLDLSSNKIQSIY 165
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 561 SGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLH 596
S +P+ S LTNLE +DLS N + L+ LH
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 413 LTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG-SVPRFLGNMSSLF 471
L + +G +LQ L E L IG LK L+ L+++ N + +P + N+++L
Sbjct: 94 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 153
Query: 472 HIDFSNNLISGEF 484
H+D S+N I +
Sbjct: 154 HLDLSSNKIQSIY 166
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 561 SGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLH 596
S +P+ S LTNLE +DLS N + L+ LH
Sbjct: 139 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 174
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 32/166 (19%)
Query: 115 PSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWV-DSFCS 173
PS + ++ K+ DL S + FR L N+ N L + SA V D
Sbjct: 30 PSGIPADTEKL-DLQSTGL-ATLSDATFRGLTKLTWLNLDYNQ---LQTLSAGVFDDLTE 84
Query: 174 IRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHIS 233
+ L L+NN+ +PLG+ F++LT L++L L N +
Sbjct: 85 LGTLGLANNQL-ASLPLGV------------FDHLT-----------QLDKLYLGGNQLK 120
Query: 234 GSIKNGIVN-LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNN 278
S+ +G+ + LT L+ L L +N L + KLTNL++L L N
Sbjct: 121 -SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 413 LTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG-SVPRFLGNMSSLF 471
L + +G +LQ L E L IG LK L+ L+++ N + +P + N+++L
Sbjct: 95 LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 154
Query: 472 HIDFSNNLISGEF 484
H+D S+N I +
Sbjct: 155 HLDLSSNKIQSIY 167
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 561 SGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLH 596
S +P+ S LTNLE +DLS N + L+ LH
Sbjct: 140 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 175
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 32/166 (19%)
Query: 115 PSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWV-DSFCS 173
PS + ++ K+ DL S + FR L N+ N L + SA V D
Sbjct: 30 PSGIPADTEKL-DLQSTGL-ATLSDATFRGLTKLTWLNLDYNQ---LQTLSAGVFDDLTE 84
Query: 174 IRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHIS 233
+ L L+NN+ +PLG+ F++LT L++L L N +
Sbjct: 85 LGTLGLANNQL-ASLPLGV------------FDHLT-----------QLDKLYLGGNQLK 120
Query: 234 GSIKNGIVN-LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNN 278
S+ +G+ + LT L+ L L +N L + KLTNL++L L N
Sbjct: 121 -SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Query: 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYT-ATSLEQLSLSF 229
F + L L+ N + L N+L GS+ ++ LE L LS+
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSY 356
Query: 230 NHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNN 278
NHI + L +L+ L L +N L + +LT+L+ + LH N
Sbjct: 357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 78/202 (38%), Gaps = 26/202 (12%)
Query: 132 HFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSF--CSIRHLDLSNNRFTGPVP 189
+FQGK T+ RL+ IT N + G W + F SI LDLS N F
Sbjct: 176 NFQGK-HFTLLRLSS--ITLQDMNEYWLG---WEKCGNPFKNTSITTLDLSGNGFKE--- 226
Query: 190 LGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGI----VNLTS 245
S K F F+ + G+ + + S S SF H + + + +
Sbjct: 227 ------SMAKRF---FDAIAGTKIQSLILSNSYNMGS-SFGHTNFKDPDNFTFKGLEASG 276
Query: 246 LRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFE 305
++ +L + + L+ T+LE L L N +L LNL NF
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL- 335
Query: 306 GDISVFNFSTLLKLRVLDLGSN 327
G I F L KL VLDL N
Sbjct: 336 GSIDSRMFENLDKLEVLDLSYN 357
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 417 NGFKNLQVLGLAECKLKGQVPS--WIGKLKKLQVLDLSFNQLTGSVPR-FLGNMSSLFHI 473
NG NL+VL L +C L G V S + L L++L L N + P F NM +
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159
Query: 474 DFSNNLI 480
D + N +
Sbjct: 160 DLTFNKV 166
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 271 ESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330
+ + LH N ++C NLT+L L SN G I F+ L L LDL N
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQL 92
Query: 331 GSL-PITLNSCKSLTAVNLARNQLEGQISPGI 361
+ P T L ++L R L+ ++ PG+
Sbjct: 93 RVVDPTTFRGLGHLHTLHLDRCGLQ-ELGPGL 123
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 66/156 (42%), Gaps = 28/156 (17%)
Query: 123 IKIIDLSSNHFQGKIP---STIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDL 179
++ +DLSSN + P TI +L L+ N T + W S SI++L L
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWEL---SNTSIQNLSL 229
Query: 180 SNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNG 239
+NN+ L T + F+ L T+L QL LS+N++
Sbjct: 230 ANNQL-------------LATSESTFSGLKW---------TNLTQLDLSYNNLHDVGNGS 267
Query: 240 IVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVL 275
L SLR L L N++ L PR L+NL L L
Sbjct: 268 FSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 107/243 (44%), Gaps = 33/243 (13%)
Query: 117 SLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAW--VDSFCSI 174
SL+ + + I++L+ N KI S F +L ++ N ++ W +++ I
Sbjct: 387 SLAHSPLHILNLTKNKI-SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 445
Query: 175 -----RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSF 229
++L L+ N F VP S RL R + S P +L L LS
Sbjct: 446 YLSYNKYLQLTRNSF-ALVP----SLQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSN 499
Query: 230 NHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXK 289
N+I+ + + L L IL+L N NL L H N K
Sbjct: 500 NNIANINDDMLEGLEKLEILDLQHN--------------NLARLWKHANPGGPIYFL--K 543
Query: 290 NCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITL-NSCKSLTAVNL 348
+L +LNL+SN F+ +I V F L +L+++DLG N +LP ++ N+ SL ++NL
Sbjct: 544 GLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNL 601
Query: 349 ARN 351
+N
Sbjct: 602 QKN 604
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 130/357 (36%), Gaps = 69/357 (19%)
Query: 154 SNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP 213
SNN L S + + S++ L+LS+N+ P + RL L SL
Sbjct: 163 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 222
Query: 214 DDI---YTATSLEQLSLSFNHISGSIKNGIVNL--TSLRILELYSNSLTGLIPRDIGKLT 268
+ + TS+ LSLS + +S + + L T+L +L+L N+L + L
Sbjct: 223 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 282
Query: 269 NLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
LE L N N+ LNL+ +F + IS+
Sbjct: 283 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL------------------ 324
Query: 329 FTGSLP----ITLNSCKSLTAVNLARNQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAI 384
SLP + K L +N+ N + PGI +
Sbjct: 325 --ASLPKIDDFSFQWLKCLEHLNMEDNDI-----PGIKS--------------------- 356
Query: 385 RILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAE---CKLKGQVPSWIG 441
+ G NLK L + +F N+ S L +L L + K++ SW+G
Sbjct: 357 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSL-AHSPLHILNLTKNKISKIESDAFSWLG 415
Query: 442 KLKKLQVLDLSFN----QLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPAL 494
L+VLDL N +LTG R L N+ F I S N F +P+L
Sbjct: 416 ---HLEVLDLGLNEIGQELTGQEWRGLENI---FEIYLSYNKYLQLTRNSFALVPSL 466
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 289 KNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITL-NSCKSLTAVN 347
K +L +LNL+SN F+ +I V F L +L+++DLG N +LP ++ N+ SL ++N
Sbjct: 538 KGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLN 595
Query: 348 LARN 351
L +N
Sbjct: 596 LQKN 599
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 130/357 (36%), Gaps = 69/357 (19%)
Query: 154 SNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP 213
SNN L S + + S++ L+LS+N+ P + RL L SL
Sbjct: 158 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 217
Query: 214 DDI---YTATSLEQLSLSFNHISGSIKNGIVNL--TSLRILELYSNSLTGLIPRDIGKLT 268
+ + TS+ LSLS + +S + + L T+L +L+L N+L + L
Sbjct: 218 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 277
Query: 269 NLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
LE L N N+ LNL+ +F + IS+
Sbjct: 278 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL------------------ 319
Query: 329 FTGSLP----ITLNSCKSLTAVNLARNQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAI 384
SLP + K L +N+ N + PGI +
Sbjct: 320 --ASLPKIDDFSFQWLKCLEHLNMEDNDI-----PGIKS--------------------- 351
Query: 385 RILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAE---CKLKGQVPSWIG 441
+ G NLK L + +F N+ S L +L L + K++ SW+G
Sbjct: 352 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSL-AHSPLHILNLTKNKISKIESDAFSWLG 410
Query: 442 KLKKLQVLDLSFN----QLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPAL 494
L+VLDL N +LTG R L N+ F I S N F +P+L
Sbjct: 411 ---HLEVLDLGLNEIGQELTGQEWRGLENI---FEIYLSYNKYLQLTRNSFALVPSL 461
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 107/243 (44%), Gaps = 33/243 (13%)
Query: 117 SLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAW--VDSFCSI 174
SL+ + + I++L+ N KI S F +L ++ N ++ W +++ I
Sbjct: 377 SLAHSPLHILNLTKNKI-SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435
Query: 175 -----RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSF 229
++L L+ N F VP S RL R + S P +L L LS
Sbjct: 436 YLSYNKYLQLTRNSF-ALVP----SLQRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSN 489
Query: 230 NHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXK 289
N+I+ + + L L IL+L N NL L H N K
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHN--------------NLARLWKHANPGGPIYFL--K 533
Query: 290 NCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITL-NSCKSLTAVNL 348
+L +LNL+SN F+ +I V F L +L+++DLG N +LP ++ N+ SL ++NL
Sbjct: 534 GLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNL-NTLPASVFNNQVSLKSLNL 591
Query: 349 ARN 351
+N
Sbjct: 592 QKN 594
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 130/357 (36%), Gaps = 69/357 (19%)
Query: 154 SNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP 213
SNN L S + + S++ L+LS+N+ P + RL L SL
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT 212
Query: 214 DDI---YTATSLEQLSLSFNHISGSIKNGIVNL--TSLRILELYSNSLTGLIPRDIGKLT 268
+ + TS+ LSLS + +S + + L T+L +L+L N+L + L
Sbjct: 213 EKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP 272
Query: 269 NLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328
LE L N N+ LNL+ +F + IS+
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL------------------ 314
Query: 329 FTGSLP----ITLNSCKSLTAVNLARNQLEGQISPGIVAXXXXXXXXXXXXXXTNITGAI 384
SLP + K L +N+ N + PGI +
Sbjct: 315 --ASLPKIDDFSFQWLKCLEHLNMEDNDI-----PGIKS--------------------- 346
Query: 385 RILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAE---CKLKGQVPSWIG 441
+ G NLK L + +F N+ S L +L L + K++ SW+G
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSL-AHSPLHILNLTKNKISKIESDAFSWLG 405
Query: 442 KLKKLQVLDLSFN----QLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPAL 494
L+VLDL N +LTG R L N+ F I S N F +P+L
Sbjct: 406 ---HLEVLDLGLNEIGQELTGQEWRGLENI---FEIYLSYNKYLQLTRNSFALVPSL 456
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 418 GFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHID 474
G NL+ L LA C L+ ++P+ + L KL LDLS N L+ P G+ L H+
Sbjct: 183 GLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRP---GSFQGLMHLQ 234
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 222 LEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXX 280
LE L LS NHI +I+ G N L +L LEL+ N LT + L+ L+ L L NN
Sbjct: 90 LEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
Query: 281 XXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLG 325
+L L+L IS F L LR L+L
Sbjct: 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 206 NYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDI- 264
N+L+ P L++L + + I +N NL SL + L N+LT L+P D+
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLF 275
Query: 265 GKLTNLESLVLHNN 278
L +LE + LH+N
Sbjct: 276 TPLHHLERIHLHHN 289
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 50 SSPGLNWSSSTDCCLW---EGIKCDANGRVSHLWLPWKGLTGTISLSIG 95
+ PG NW+ + + W G+ ++NGRV+ L L G +G + +IG
Sbjct: 54 TQPGANWNFNKELDXWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG 102
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 413 LTSANGFKNLQVLGLAECKLKG-QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLF 471
L A + +Q++ + LK V + + K KKL L+ +NQL G +P F G+ L
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAF-GSEIKLA 356
Query: 472 HIDFSNNLISGEFPKEFC 489
++ + N I+ E P FC
Sbjct: 357 SLNLAYNQIT-EIPANFC 373
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 425 LGLAEC---KLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478
LG EC +L+G++P++ G KL L+L++NQ+T F G + ++ F++N
Sbjct: 332 LGXLECLYNQLEGKLPAF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387
>pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
Length = 934
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 10/59 (16%)
Query: 294 LTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGS-NLFTGSLPIT---------LNSCKS 342
L LL+ SNF + +++ F+FS +KL + + + NLF GS+ T LN CK+
Sbjct: 277 LELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKT 335
>pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|A Chain A, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8F|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
pdb|3THW|A Chain A, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|A Chain A, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|A Chain A, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|A Chain A, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 934
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 10/59 (16%)
Query: 294 LTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGS-NLFTGSLPIT---------LNSCKS 342
L LL+ SNF + +++ F+FS +KL + + + NLF GS+ T LN CK+
Sbjct: 277 LELLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKT 335
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 222 LEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXX 280
LE L LS N + I+ G N L SL LEL+ N LT + + L+ L L L NN
Sbjct: 61 LEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 281 XXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLG 325
+L L+L IS F L+ LR L+LG
Sbjct: 120 ESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLG 164
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 27/166 (16%)
Query: 137 IPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDL---------SNNRFTGP 187
+P+ F L + NN + S++ + S+R LDL S F G
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYA--FNRVPSLRRLDLGELKRLEYISEAAFEGL 155
Query: 188 V---PLGLGSCS-----------RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHIS 233
V L LG C+ RL+ N L P TSL +L L ++
Sbjct: 156 VNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA 215
Query: 234 GSIKNGIVNLTSLRILELYSNSLTGLIPRDI-GKLTNLESLVLHNN 278
+N +L SL L L N+L L P D+ L LE + L++N
Sbjct: 216 TIERNAFDDLKSLEELNLSHNNLMSL-PHDLFTPLHRLERVHLNHN 260
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 222 LEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXX 280
LE L LS N + I+ G N L SL LEL+ N LT + + L+ L L L NN
Sbjct: 61 LEILQLSKNLVR-KIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI 119
Query: 281 XXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLG 325
+L L+L IS F L+ LR L+LG
Sbjct: 120 ESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLG 164
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 65/166 (39%), Gaps = 27/166 (16%)
Query: 137 IPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDL---------SNNRFTGP 187
+P+ F L + NN + S++ + S+R LDL S F G
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIESIPSYA--FNRVPSLRRLDLGELKRLEYISEAAFEGL 155
Query: 188 V---PLGLGSCS-----------RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHIS 233
V L LG C+ RL+ N L P TSL +L L ++
Sbjct: 156 VNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA 215
Query: 234 GSIKNGIVNLTSLRILELYSNSLTGLIPRDI-GKLTNLESLVLHNN 278
+N +L SL L L N+L L P D+ L LE + L++N
Sbjct: 216 TIERNAFDDLKSLEELNLSHNNLMSL-PHDLFTPLHRLERVHLNHN 260
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 409 DNDRLTSANGF---KNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGS 459
DN+ L + KNL++L + KLK V +G L KL+VLDL N++T +
Sbjct: 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 385 RILMGCKNLKVLIIPLNFMDETMP---DNDRLTSA-----NGFKNLQVLGLAECKLKGQV 436
+ L+ C+N+++ +P + +N+++T + NLQ L KL
Sbjct: 14 QTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP 73
Query: 437 PSWIGKLKKLQVLDLSFNQLTGSVPR-FLGNMSSLFHIDFSNN 478
KL +L LDL+ N L S+PR N+ SL HI NN
Sbjct: 74 TGVFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNN 115
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSFNHIS 233
+ L L+NN+ T P L+ N LT ++P ++ T L QL L+ NH+
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLK 94
Query: 234 GSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTN 269
+ NL SL + LY+N RDI L N
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNNPWDCEC-RDIMYLRN 129
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 211 SLPDDIYTA-TSLEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIPRDIGKLT 268
SLPD ++ T L L L N + S+ NG+ + LT L+ L L +N L + +LT
Sbjct: 66 SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124
Query: 269 NLESLVLHNN 278
+L+ + LH N
Sbjct: 125 SLQKIWLHTN 134
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 234 GSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCIN 293
S+ GI T+ ++L LY N +T L P +LT L L L NN
Sbjct: 30 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 294 LTLLNLQSNFFE 305
LT L+L N +
Sbjct: 88 LTQLSLNDNQLK 99
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 234 GSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCIN 293
S+ GI T+ ++L LY N +T L P +LT L L L NN
Sbjct: 22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 294 LTLLNLQSN 302
LT L+L N
Sbjct: 80 LTQLSLNDN 88
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 130/346 (37%), Gaps = 30/346 (8%)
Query: 121 NYIKIIDLSSNHFQGKIPSTIFRL-----TQNL-ITFNVSNNSFTGLISWSAWVDSFCSI 174
N +K I+L G STIF+ T NL + FN NS T S W+ +F I
Sbjct: 186 NNVKGIEL------GAFDSTIFQSLNFGGTPNLSVIFNGLQNSTT----QSLWLGTFEDI 235
Query: 175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISG 234
D+S+ G + + S + L+ R F+ ++ + T L++L L+ H+ G
Sbjct: 236 DDEDISSAMLKGLCEMSVESLN-LQEHR--FSDISST---TFQCFTQLQELDLTATHLKG 289
Query: 235 SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXX-XKNCIN 293
+ +G+ L L+ L L N L +L L + N + N
Sbjct: 290 -LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGN 348
Query: 294 LTLLNLQSNFFEG-DISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQ 352
L L+L N E D L L+ L+L N G C L ++LA +
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 353 LEGQISPGIVAXXXXXXXXXXXXXXTNITGAIRILMGCKNLKVLIIPLN-FMDETMPDND 411
L + T +L G L+ L + N F D T+ +
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLD-TSNQHLLAGLPVLRHLNLKGNHFQDGTITKTN 467
Query: 412 RLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLT 457
L + L+VL L+ C L L K+ +DLS N LT
Sbjct: 468 LLQTVGS---LEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLT 510
>pdb|3GZU|A Chain A, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|B Chain B, Vp7 Recoated Rotavirus Dlp
Length = 800
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 557 HNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNL 608
H+N++ I D ++ +T R++L + + + LKRLH V ++ +
Sbjct: 531 HSNYNERINDAVAIITAANRLNLYQKKMKAIVEDFLKRLHIFDVARVPDDQM 582
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 234 GSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCIN 293
S+ GI T+ ++L LY N +T L P +LT L L L NN
Sbjct: 22 ASVPTGIP--TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 294 LTLLNLQSN 302
LT L+L N
Sbjct: 80 LTQLSLNDN 88
>pdb|3KZ4|A Chain A, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|B Chain B, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|4F5X|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 880
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 557 HNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNL 608
H+N++ I D ++ +T R++L + + + LKRLH V ++ +
Sbjct: 611 HSNYNERINDAVAIITAANRLNLYQKKMKAIVEDFLKRLHIFDVARVPDDQM 662
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 28/142 (19%)
Query: 211 SLPDDIYTATSLEQLSLSFNHISGSIKNGIV-NLTSLRILELYSNSLTGLIPRDIGKLTN 269
+P DI T+ +L L+ N + +G+ L L LEL N LTG+ P ++
Sbjct: 22 EIPRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79
Query: 270 LESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF 329
++ L L N +IS F L +L+ L+L N
Sbjct: 80 IQELQLGENKIK-------------------------EISNKMFLGLHQLKTLNLYDNQI 114
Query: 330 TGSLPITLNSCKSLTAVNLARN 351
+ +P + SLT++NLA N
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASN 136
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 210 GSLPDDIYTATSLEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIPRDIGKLT 268
S+P I T T + L L N I+ ++ G+ + LT L L L N LT L KLT
Sbjct: 32 ASVPAGIPTTTQV--LHLYINQIT-KLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLT 88
Query: 269 NLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSNFFEGDIS 309
L L LH N N +LT + L +N ++ + S
Sbjct: 89 KLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECS 129
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 174 IRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHIS 233
+ HLDLS+NR +P L + L+ +A N L D + L++L L N +
Sbjct: 465 VTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQ 521
Query: 234 GSIK-NGIVNLTSLRILELYSNSL 256
S +V+ L +L L NSL
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSL 545
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 174 IRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHIS 233
+ HLDLS+NR +P L + L+ +A N L D + L++L L N +
Sbjct: 465 VTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQ 521
Query: 234 GSIK-NGIVNLTSLRILELYSNSL 256
S +V+ L +L L NSL
Sbjct: 522 QSAAIQPLVSCPRLVLLNLQGNSL 545
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 207 YLTGS----LPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPR 262
YL G+ +P ++ L + LS N IS N+T L L L N L + PR
Sbjct: 37 YLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR 96
Query: 263 DIGKLTNLESLVLHNN 278
L +L L LH N
Sbjct: 97 TFDGLKSLRLLSLHGN 112
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 418 GFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSN 477
G ++++ L L ++ P + L LQVL L NQ+T P L +++L ++ N
Sbjct: 111 GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGN 166
Query: 478 NLISGEFP-KEFCRLPALTPEQDK 500
N ++ P +L L + +K
Sbjct: 167 NQVNDLTPLANLSKLTTLRADDNK 190
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 166 AWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQL 225
AW +S I L+LS+N TG V L ++K N + S+P D+ +L++L
Sbjct: 425 AWAES---ILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM-SIPKDVTHLQALQEL 478
Query: 226 SLSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIP--RDIGKLTNLESLVLHNN 278
+++ N + S+ +G+ + LTSL+ + L+ N P R + + N S V+ N+
Sbjct: 479 NVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNS 533
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 17/132 (12%)
Query: 157 SFTGLISWSAWVDSFCSI---------RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNY 207
S T L ++A+V+ I L + NN+ T PL + S+L G N
Sbjct: 197 SLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQ 254
Query: 208 LTGSLPDDIYTATSLEQLSLSFNHISG-SIKNGIVNLTSLRILELYSNSLTGLIPRDIGK 266
++ + + T L+ L++ N IS S+ N NL+ L L L +N L IG
Sbjct: 255 ISD--INAVKDLTKLKXLNVGSNQISDISVLN---NLSQLNSLFLNNNQLGNEDXEVIGG 309
Query: 267 LTNLESLVLHNN 278
LTNL +L L N
Sbjct: 310 LTNLTTLFLSQN 321
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 170 SFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSF 229
S S+ + N+ T P+ + +RL + + G N +T P + + L L +
Sbjct: 197 SLTSLHYFTAYVNQITDITPVA--NXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252
Query: 230 NHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXK 289
N IS N + +LT L+ L + SN ++ + + L+ L SL L+NN
Sbjct: 253 NQISD--INAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIG 308
Query: 290 NCINLTLLNLQSNFF 304
NLT L L N
Sbjct: 309 GLTNLTTLFLSQNHI 323
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 139 STIFRLTQNLI-TFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSR 197
+TI L++NL+ TF S L+ ++ ++ +L+ + G +P+
Sbjct: 33 TTILHLSENLLYTF-----SLATLMPYTRLTQ--LNLDRCELTKLQVDGTLPV------- 78
Query: 198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLT 257
L T N L SLP T +L L +SFN ++ + L L+ L L N L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 258 GLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSN 302
L P + LE L L NN NL L LQ N
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 139 STIFRLTQNLI-TFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSR 197
+TI L++NL+ TF S L+ ++ ++ +L+ + G +P+
Sbjct: 33 TTILHLSENLLYTF-----SLATLMPYTRLTQ--LNLDRCELTKLQVDGTLPV------- 78
Query: 198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLT 257
L T N L SLP T +L L +SFN ++ + L L+ L L N L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 258 GLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSN 302
L P + LE L L NN NL L LQ N
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Query: 193 GSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY 252
G+ L T N L SLP T +L L +SFN ++ + L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 253 SNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSN 302
N L L P + LE L L NN NL L LQ N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Query: 193 GSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY 252
G+ L T N L SLP T +L L +SFN ++ + L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 253 SNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSN 302
N L L P + LE L L NN NL L LQ N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Query: 193 GSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY 252
G+ L T N L SLP T +L L +SFN ++ + L L+ L L
Sbjct: 75 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 133
Query: 253 SNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSN 302
N L L P + LE L L NN NL L LQ N
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 183
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 139 STIFRLTQNLI-TFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSR 197
+TI L++NL+ TF S L+ ++ ++ +L+ + G +P+
Sbjct: 33 TTILHLSENLLYTF-----SLATLMPYTRLTQ--LNLDRAELTKLQVDGTLPV------- 78
Query: 198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLT 257
L T N L SLP T +L L +SFN ++ + L L+ L L N L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 258 GLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSN 302
L P + LE L L NN NL L LQ N
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 418 GFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSN 477
G ++++ L L ++ P + L LQVL L NQ+T P L +++L ++ N
Sbjct: 105 GLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGN 160
Query: 478 NLISGEFP-KEFCRLPALTPEQDK 500
+S P +L L + +K
Sbjct: 161 AQVSDLTPLANLSKLTTLKADDNK 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 139 STIFRLTQNLI-TFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSR 197
+TI L++NL+ TF S L+ ++ ++ +L+ + G +P+
Sbjct: 33 TTILHLSENLLYTF-----SLATLMPYTRLTQ--LNLDRAELTKLQVDGTLPV------- 78
Query: 198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLT 257
L T N L SLP T +L L +SFN ++ + L L+ L L N L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 258 GLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSN 302
L P + LE L L NN NL L LQ N
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 139 STIFRLTQNLI-TFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSR 197
+TI L++NL+ TF S L+ ++ ++ +L+ + G +P+
Sbjct: 33 TTILHLSENLLYTF-----SLATLMPYTRLTQ--LNLDRAELTKLQVDGTLPV------- 78
Query: 198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLT 257
L T N L SLP T +L L +SFN ++ + L L+ L L N L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 258 GLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSN 302
L P + LE L L NN NL L LQ N
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 1/110 (0%)
Query: 193 GSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY 252
G+ L T N L SLP T +L L +SFN ++ + L L+ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132
Query: 253 SNSLTGLIPRDIGKLTNLESLVLHNNXXXXXXXXXXKNCINLTLLNLQSN 302
N L L P + LE L L NN NL L LQ N
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQEN 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,151,514
Number of Sequences: 62578
Number of extensions: 663257
Number of successful extensions: 1815
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1206
Number of HSP's gapped (non-prelim): 452
length of query: 653
length of database: 14,973,337
effective HSP length: 105
effective length of query: 548
effective length of database: 8,402,647
effective search space: 4604650556
effective search space used: 4604650556
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)