Query 041562
Match_columns 653
No_of_seqs 858 out of 4782
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:25:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.4E-71 3.1E-76 655.3 44.7 585 35-642 27-620 (968)
2 PLN00113 leucine-rich repeat r 100.0 5.9E-57 1.3E-61 531.2 36.1 514 98-633 69-585 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 6.5E-41 1.4E-45 323.0 -13.6 481 76-615 47-545 (565)
4 KOG4194 Membrane glycoprotein 100.0 2.9E-37 6.3E-42 310.4 7.3 394 122-605 53-448 (873)
5 KOG4194 Membrane glycoprotein 100.0 6.4E-37 1.4E-41 308.0 7.2 367 101-477 81-448 (873)
6 KOG0472 Leucine-rich repeat pr 100.0 2.7E-39 5.9E-44 311.8 -14.6 486 95-632 42-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 8.9E-35 1.9E-39 294.3 -4.1 368 171-609 6-375 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 2.9E-34 6.4E-39 290.5 -2.1 385 97-605 6-395 (1255)
9 KOG0618 Serine/threonine phosp 100.0 1.6E-33 3.5E-38 298.2 -1.7 466 76-615 47-515 (1081)
10 KOG0618 Serine/threonine phosp 100.0 8.2E-34 1.8E-38 300.4 -6.1 460 76-607 23-487 (1081)
11 PLN03210 Resistant to P. syrin 99.9 9.1E-24 2E-28 249.8 26.8 341 192-607 554-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3.6E-23 7.8E-28 244.7 29.9 363 73-479 531-904 (1153)
13 KOG4237 Extracellular matrix p 99.9 8.6E-26 1.9E-30 218.5 -2.1 277 74-354 67-359 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 7.5E-22 1.6E-26 217.0 16.7 42 550-592 424-465 (788)
15 KOG4237 Extracellular matrix p 99.9 3.9E-24 8.5E-29 207.1 -3.1 396 173-606 68-498 (498)
16 PRK15387 E3 ubiquitin-protein 99.9 5.5E-21 1.2E-25 210.2 18.5 264 122-464 202-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2E-20 4.4E-25 207.2 14.5 313 33-383 59-406 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.9E-19 4.1E-24 199.5 12.3 202 221-481 179-380 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 3.5E-19 7.7E-24 183.4 2.1 284 176-479 2-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 5.7E-19 1.2E-23 181.9 2.1 138 193-330 78-234 (319)
21 KOG0617 Ras suppressor protein 99.6 2.5E-18 5.3E-23 148.4 -6.3 155 194-354 31-186 (264)
22 KOG0617 Ras suppressor protein 99.6 4.8E-18 1E-22 146.6 -5.3 164 216-384 29-192 (264)
23 PLN03150 hypothetical protein; 99.6 4.6E-15 1E-19 164.3 14.8 151 31-184 366-527 (623)
24 PLN03150 hypothetical protein; 99.4 8.8E-13 1.9E-17 146.2 7.3 103 539-642 434-538 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 1.3E-13 2.8E-18 140.6 -3.6 194 317-607 75-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.2 1E-12 2.2E-17 134.1 -3.2 195 170-375 73-270 (722)
27 KOG1909 Ran GTPase-activating 99.2 3E-12 6.4E-17 123.7 -1.3 89 193-281 154-254 (382)
28 COG4886 Leucine-rich repeat (L 99.1 6.9E-11 1.5E-15 125.4 7.2 173 173-354 117-290 (394)
29 KOG3207 Beta-tubulin folding c 99.1 1.3E-11 2.8E-16 122.5 1.3 138 314-481 118-259 (505)
30 KOG3207 Beta-tubulin folding c 99.1 1.5E-11 3.3E-16 122.0 1.6 160 121-281 121-284 (505)
31 COG4886 Leucine-rich repeat (L 99.1 7.2E-11 1.6E-15 125.2 6.6 193 176-378 97-290 (394)
32 KOG1909 Ran GTPase-activating 99.1 5.7E-12 1.2E-16 121.8 -1.6 232 73-304 29-310 (382)
33 KOG1259 Nischarin, modulator o 99.1 3.5E-11 7.5E-16 113.7 0.8 110 264-380 280-389 (490)
34 KOG1259 Nischarin, modulator o 99.0 9E-11 2E-15 110.9 1.5 131 244-381 284-415 (490)
35 PF14580 LRR_9: Leucine-rich r 99.0 3.3E-10 7.1E-15 103.1 3.4 83 292-380 19-103 (175)
36 PF14580 LRR_9: Leucine-rich r 99.0 2.8E-10 6E-15 103.6 2.8 60 243-305 41-101 (175)
37 KOG4658 Apoptotic ATPase [Sign 98.9 9.6E-10 2.1E-14 124.7 6.4 126 98-228 523-650 (889)
38 KOG4658 Apoptotic ATPase [Sign 98.9 9.5E-10 2E-14 124.8 4.3 107 171-278 544-652 (889)
39 KOG0531 Protein phosphatase 1, 98.9 2.8E-10 6.2E-15 120.9 -1.2 175 192-378 91-268 (414)
40 PF13855 LRR_8: Leucine rich r 98.9 1.8E-09 3.8E-14 80.7 3.3 60 549-608 2-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 2.7E-10 5.8E-15 121.1 -2.1 246 194-485 70-322 (414)
42 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.4E-13 76.4 3.2 61 420-480 1-61 (61)
43 PF08263 LRRNT_2: Leucine rich 98.7 2.4E-08 5.3E-13 68.1 4.1 36 36-71 2-43 (43)
44 KOG2120 SCF ubiquitin ligase, 98.5 2E-09 4.3E-14 102.0 -6.2 202 75-279 160-374 (419)
45 KOG1859 Leucine-rich repeat pr 98.5 1.5E-09 3.4E-14 114.1 -8.6 128 420-609 164-292 (1096)
46 KOG1859 Leucine-rich repeat pr 98.4 3.7E-09 7.9E-14 111.4 -7.7 125 198-329 166-291 (1096)
47 COG5238 RNA1 Ran GTPase-activa 98.4 3.6E-08 7.9E-13 92.4 -2.1 187 94-281 26-255 (388)
48 KOG4579 Leucine-rich repeat (L 98.3 3.5E-08 7.6E-13 83.0 -2.8 77 550-629 79-155 (177)
49 KOG2120 SCF ubiquitin ligase, 98.3 1.2E-08 2.5E-13 96.9 -6.6 177 173-351 186-373 (419)
50 KOG2982 Uncharacterized conser 98.3 1.7E-07 3.7E-12 89.1 0.9 86 74-159 71-159 (418)
51 KOG2982 Uncharacterized conser 98.2 4.9E-07 1.1E-11 86.0 2.0 179 145-330 70-262 (418)
52 KOG4579 Leucine-rich repeat (L 98.1 1.6E-07 3.4E-12 79.1 -3.3 138 420-617 27-167 (177)
53 KOG3665 ZYG-1-like serine/thre 97.9 6.8E-06 1.5E-10 91.4 3.6 180 75-258 61-264 (699)
54 COG5238 RNA1 Ran GTPase-activa 97.9 5.7E-06 1.2E-10 78.0 2.1 240 239-481 25-316 (388)
55 PF12799 LRR_4: Leucine Rich r 97.9 9.2E-06 2E-10 55.5 2.5 36 549-585 2-37 (44)
56 PF12799 LRR_4: Leucine Rich r 97.8 1E-05 2.2E-10 55.2 2.0 37 572-609 1-37 (44)
57 PRK15386 type III secretion pr 97.8 9.7E-05 2.1E-09 75.9 9.2 57 549-609 157-219 (426)
58 KOG4341 F-box protein containi 97.7 9E-07 2E-11 88.2 -6.3 37 340-376 400-437 (483)
59 PRK15386 type III secretion pr 97.7 0.00012 2.7E-09 75.1 8.3 54 549-607 133-188 (426)
60 KOG4341 F-box protein containi 97.7 2.4E-06 5.2E-11 85.3 -4.0 63 339-402 370-437 (483)
61 KOG1644 U2-associated snRNP A' 97.7 7.8E-05 1.7E-09 67.6 5.6 83 246-330 44-126 (233)
62 KOG1644 U2-associated snRNP A' 97.5 0.00021 4.6E-09 64.8 5.8 41 313-353 60-100 (233)
63 KOG3665 ZYG-1-like serine/thre 97.4 5.1E-05 1.1E-09 84.5 1.7 149 98-250 122-281 (699)
64 PF13306 LRR_5: Leucine rich r 97.1 0.0015 3.3E-08 56.8 7.0 9 316-324 80-88 (129)
65 PF13306 LRR_5: Leucine rich r 97.0 0.0028 6E-08 55.2 8.3 83 216-301 8-90 (129)
66 KOG2739 Leucine-rich acidic nu 96.7 0.00095 2.1E-08 63.3 2.5 61 267-330 42-104 (260)
67 KOG2123 Uncharacterized conser 96.5 9.2E-05 2E-09 70.3 -5.5 101 243-347 18-123 (388)
68 KOG2123 Uncharacterized conser 96.5 7.5E-05 1.6E-09 70.9 -6.1 57 293-354 20-76 (388)
69 KOG1947 Leucine rich repeat pr 96.4 0.00056 1.2E-08 74.6 -1.1 40 142-181 184-223 (482)
70 KOG2739 Leucine-rich acidic nu 96.3 0.0026 5.7E-08 60.4 2.8 42 264-305 61-104 (260)
71 KOG1947 Leucine rich repeat pr 96.1 0.00065 1.4E-08 74.1 -2.7 189 96-294 186-389 (482)
72 PF00560 LRR_1: Leucine Rich R 96.0 0.0029 6.3E-08 35.8 1.1 18 574-592 2-19 (22)
73 PF00560 LRR_1: Leucine Rich R 95.6 0.0056 1.2E-07 34.7 0.9 22 549-571 1-22 (22)
74 KOG4308 LRR-containing protein 95.5 2E-05 4.3E-10 84.0 -17.2 62 421-483 377-447 (478)
75 KOG4308 LRR-containing protein 93.4 0.00097 2.1E-08 71.3 -10.3 87 219-305 203-303 (478)
76 PF13504 LRR_7: Leucine rich r 92.8 0.047 1E-06 28.6 0.7 9 551-559 4-12 (17)
77 smart00369 LRR_TYP Leucine-ric 89.3 0.26 5.6E-06 29.0 1.6 14 572-585 2-15 (26)
78 smart00370 LRR Leucine-rich re 89.3 0.26 5.6E-06 29.0 1.6 14 572-585 2-15 (26)
79 smart00370 LRR Leucine-rich re 89.0 0.4 8.6E-06 28.2 2.3 20 122-142 3-22 (26)
80 smart00369 LRR_TYP Leucine-ric 89.0 0.4 8.6E-06 28.2 2.3 20 122-142 3-22 (26)
81 PF13516 LRR_6: Leucine Rich r 86.9 0.11 2.3E-06 30.0 -1.1 13 573-585 3-15 (24)
82 KOG0473 Leucine-rich repeat pr 81.5 0.03 6.5E-07 52.3 -7.6 62 241-304 62-123 (326)
83 KOG0473 Leucine-rich repeat pr 81.4 0.034 7.4E-07 51.9 -7.3 85 241-329 39-123 (326)
84 KOG3864 Uncharacterized conser 81.1 0.19 4.1E-06 46.2 -2.6 35 269-303 102-136 (221)
85 smart00365 LRR_SD22 Leucine-ri 75.0 2.1 4.7E-05 25.2 1.5 15 571-585 1-15 (26)
86 smart00364 LRR_BAC Leucine-ric 74.7 1.9 4E-05 25.4 1.2 12 574-585 4-15 (26)
87 KOG3864 Uncharacterized conser 73.9 0.75 1.6E-05 42.4 -0.9 80 75-155 102-185 (221)
88 KOG4242 Predicted myosin-I-bin 62.1 34 0.00073 36.2 7.9 83 171-255 164-252 (553)
89 smart00368 LRR_RI Leucine rich 62.0 7 0.00015 23.4 1.9 13 99-111 3-15 (28)
90 KOG3763 mRNA export factor TAP 61.8 5.1 0.00011 42.8 2.1 15 420-434 270-284 (585)
91 KOG4242 Predicted myosin-I-bin 60.5 25 0.00053 37.1 6.6 20 121-140 165-184 (553)
92 KOG3763 mRNA export factor TAP 35.5 22 0.00047 38.3 1.7 14 220-233 270-283 (585)
93 TIGR00864 PCC polycystin catio 28.6 40 0.00086 43.8 2.7 32 127-159 1-32 (2740)
94 TIGR00864 PCC polycystin catio 27.2 33 0.00072 44.4 1.7 33 554-586 1-33 (2740)
95 smart00367 LRR_CC Leucine-rich 27.0 41 0.00089 19.5 1.3 11 444-454 2-12 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.4e-71 Score=655.30 Aligned_cols=585 Identities=34% Similarity=0.504 Sum_probs=521.2
Q ss_pred CHHhHHHHHHhhhcCCCCC---CCCCCCCCCccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCC
Q 041562 35 NQIDQDSLLSLGFNISSPG---LNWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLS 111 (653)
Q Consensus 35 ~~~~~~~ll~~k~~~~~~~---~~W~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~ 111 (653)
.++|++||++||+++.++. .+|+.+.+||.|.||+|+..++|+.|+|++++++|.+++.+..+++|++|+|++|.+.
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~ 106 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence 4689999999999997654 6898788999999999998889999999999999999999999999999999999999
Q ss_pred CCCCcccc-C-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCC
Q 041562 112 GEFPSSLS-S-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP 189 (653)
Q Consensus 112 ~~~p~~~~-~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 189 (653)
+.+|..+. . ++|++|+|++|+++|.+|.. .+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|
T Consensus 107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~l~~L~~L~Ls~n~~~~~~p~~~~--~l~~L~~L~L~~n~l~~~~p 181 (968)
T PLN00113 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG---SIPNLETLDLSNNMLSGEIPNDIG--SFSSLKVLDLGGNVLVGKIP 181 (968)
T ss_pred CcCChHHhccCCCCCEEECcCCccccccCcc---ccCCCCEEECcCCcccccCChHHh--cCCCCCEEECccCcccccCC
Confidence 99998765 3 99999999999999999863 488999999999999998887765 79999999999999999999
Q ss_pred ccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCC
Q 041562 190 LGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTN 269 (653)
Q Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 269 (653)
..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++
T Consensus 182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 261 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKN 261 (968)
T ss_pred hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEcc
Q 041562 270 LESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLA 349 (653)
Q Consensus 270 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 349 (653)
|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+..|..+..+++|+.|+++
T Consensus 262 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 340 (968)
T PLN00113 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLW 340 (968)
T ss_pred CCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECc
Confidence 99999999999999999999999999999999999988885 78899999999999999999999999999999999999
Q ss_pred CccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccC
Q 041562 350 RNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAE 429 (653)
Q Consensus 350 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 429 (653)
+|.+.+.+|..++.+++|+.|++++|+++... ...+..+++|+.++++.|.+.+.+|... ..+++|+.|++++
T Consensus 341 ~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~--p~~~~~~~~L~~L~l~~n~l~~~~p~~~-----~~~~~L~~L~L~~ 413 (968)
T PLN00113 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI--PEGLCSSGNLFKLILFSNSLEGEIPKSL-----GACRSLRRVRLQD 413 (968)
T ss_pred CCCCcCcCChHHhCCCCCcEEECCCCeeEeeC--ChhHhCcCCCCEEECcCCEecccCCHHH-----hCCCCCCEEECcC
Confidence 99999999999999999999999999987422 2345677899999999999988887644 3678999999999
Q ss_pred CcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccc
Q 041562 430 CKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLE 509 (653)
Q Consensus 430 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~ 509 (653)
|.+++.+|..+..++.|+.|++++|++.+.+|..+..+++|++|++++|++.+.+|..+ ..+.|+.++++++......+
T Consensus 414 n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~ 492 (968)
T PLN00113 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVP 492 (968)
T ss_pred CEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccC
Confidence 99999999999999999999999999999999888899999999999999998888765 35778888877654332211
Q ss_pred cccccCCccccccccccccccccc-ceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeec
Q 041562 510 FSLFKGSNNFIGEYKKILTFHEQY-TWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEI 588 (653)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i 588 (653)
.. +. ....+..+.... .+.+.+|..++.++ +|++|+|++|.+++.+|..|+.+++|++|||++|+++|.+
T Consensus 493 ~~-~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 563 (968)
T PLN00113 493 RK-LG-------SLSELMQLKLSENKLSGEIPDELSSCK-KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563 (968)
T ss_pred hh-hh-------hhhccCEEECcCCcceeeCChHHcCcc-CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence 10 00 011111222221 26788999999999 9999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCCCCC---CCCCC
Q 041562 589 PVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIV---QRSCS 642 (653)
Q Consensus 589 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~---~~~c~ 642 (653)
|..+..+++|++|++++|+++|.+|..++|.++.+.+|.||+++||.+. .++|.
T Consensus 564 p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~ 620 (968)
T PLN00113 564 PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCK 620 (968)
T ss_pred ChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCc
Confidence 9999999999999999999999999999999999999999999998653 24674
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.9e-57 Score=531.21 Aligned_cols=514 Identities=32% Similarity=0.465 Sum_probs=464.2
Q ss_pred CCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCE
Q 041562 98 THLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRH 176 (653)
Q Consensus 98 ~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~ 176 (653)
.+++.|||++|.++|.++..+.. ++|++|+|++|++.|.+|..++..+++|++|++++|.+++.+|.. .+++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~----~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG----SIPNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc----ccCCCCE
Confidence 57999999999999999988877 999999999999999999999988999999999999999988753 5889999
Q ss_pred EEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcC
Q 041562 177 LDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSL 256 (653)
Q Consensus 177 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l 256 (653)
|++++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|++
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCcc
Q 041562 257 TGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPIT 336 (653)
Q Consensus 257 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 336 (653)
.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.+|..
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~ 303 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPEL 303 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeeccCCChh
Confidence 999999999999999999999999999999999999999999999999988875 7889999999999999999999999
Q ss_pred CcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCC
Q 041562 337 LNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSA 416 (653)
Q Consensus 337 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 416 (653)
+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++... ...+..+++|+.|+++.|.+.+.+|....
T Consensus 304 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~---- 377 (968)
T PLN00113 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI--PKNLGKHNNLTVLDLSTNNLTGEIPEGLC---- 377 (968)
T ss_pred HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC--ChHHhCCCCCcEEECCCCeeEeeCChhHh----
Confidence 999999999999999999999999999999999999999987422 23567889999999999999988886543
Q ss_pred CCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCc
Q 041562 417 NGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTP 496 (653)
Q Consensus 417 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 496 (653)
.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++.|+.|++++|++++.+|..+..+++|+.
T Consensus 378 -~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 456 (968)
T PLN00113 378 -SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM 456 (968)
T ss_pred -CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCcccccccccccccccc-cceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCC
Q 041562 497 EQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQ-YTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLE 575 (653)
Q Consensus 497 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 575 (653)
+++.++......+. ... ...+..+... ..+.+.+|..++.++ .|+.|+|++|.+.+.+|+.++++++|+
T Consensus 457 L~L~~n~~~~~~p~--~~~-------~~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 526 (968)
T PLN00113 457 LSLARNKFFGGLPD--SFG-------SKRLENLDLSRNQFSGAVPRKLGSLS-ELMQLKLSENKLSGEIPDELSSCKKLV 526 (968)
T ss_pred EECcCceeeeecCc--ccc-------cccceEEECcCCccCCccChhhhhhh-ccCEEECcCCcceeeCChHHcCccCCC
Confidence 99887654322211 000 0112222222 126678899999999 999999999999999999999999999
Q ss_pred eEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCC-CCCCCcCCCccCCCCCCC
Q 041562 576 RMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG-GQFDTFPSSSFRGNPDLC 633 (653)
Q Consensus 576 ~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lc 633 (653)
+|+|++|.++|.+|..+..+++|++|++++|+++|.+|.. ..+..+....+.+|+..+
T Consensus 527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred EEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 9999999999999999999999999999999999999975 446667778888998765
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=6.5e-41 Score=322.96 Aligned_cols=481 Identities=24% Similarity=0.326 Sum_probs=255.2
Q ss_pred EEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEcc
Q 041562 76 VSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVS 154 (653)
Q Consensus 76 v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls 154 (653)
...+.++.|.+. .+.+.+.++..|.+|++++|++. ..|++++. ..++.++.++|++. .+|+.+.. +.+|+.++++
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s-~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGS-LISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhh-hhhhhhhhcc
Confidence 455667777665 44566777888888888888877 44444444 66777777777777 67766553 5555566666
Q ss_pred CCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcc
Q 041562 155 NNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISG 234 (653)
Q Consensus 155 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~ 234 (653)
+|.+...++.. + .+-.|+.++..+|+++ ..|..+.++.+|..+++.+|.+.. .|+..-+++.|++||...|.+.
T Consensus 123 ~n~~~el~~~i-~--~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~- 196 (565)
T KOG0472|consen 123 SNELKELPDSI-G--RLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE- 196 (565)
T ss_pred ccceeecCchH-H--HHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-
Confidence 66555443321 1 3444555555555554 344455555555555555555542 2222222455555555554443
Q ss_pred cccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccc-cCCCCCcEEEccCCcCccccChhhc
Q 041562 235 SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL-KNCINLTLLNLQSNFFEGDISVFNF 313 (653)
Q Consensus 235 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~i~~~~~ 313 (653)
.+|..++.+.+|..|++..|++. .+| .|..+..|++++++.|++. .+|... .+++++..||+.+|+++ ++|. .+
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pd-e~ 271 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPD-EI 271 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCch-HH
Confidence 44445555555555555555544 233 4444455555555555544 333332 24455555555555554 3442 33
Q ss_pred cCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCC------CCCCE----EECCCC---CCCC-
Q 041562 314 STLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVAL------KSLSF----LSLSNN---SLTN- 379 (653)
Q Consensus 314 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l------~~L~~----L~Ls~n---~l~~- 379 (653)
..+.+|++||+++|.++ ..|..++++ .|+.|.+.+|.+... -..+-.. +.|+. =.++.. .-+.
T Consensus 272 clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred HHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 44444555555555554 344445544 455555555543211 0000000 00000 000000 0000
Q ss_pred --CCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCc
Q 041562 380 --ITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLT 457 (653)
Q Consensus 380 --~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 457 (653)
.+..+.......+.+.|+++.-+++. +|+..+-. ..-.-.+..+++.|++. ++|..+..+..+.+.-+..|+..
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s~~qlt~-VPdEVfea--~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVSDKQLTL-VPDEVFEA--AKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred CCCCCcccchhhhhhhhhhccccccccc-CCHHHHHH--hhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence 00011111223344444444444432 22221110 01112455666666666 56665555554443333333333
Q ss_pred cCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceee
Q 041562 458 GSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKT 537 (653)
Q Consensus 458 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 537 (653)
+.+|..+..+++|..|+|++|.+. .+|..++.+..|+.++++.+.. -
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF--------------------------------r 471 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF--------------------------------R 471 (565)
T ss_pred ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc--------------------------------c
Confidence 366666777777777777777665 6677777776676666654311 1
Q ss_pred eCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCC
Q 041562 538 TASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG 615 (653)
Q Consensus 538 ~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 615 (653)
.+|..+-.+. .++.+-.++|++....|+.+++|.+|..|||.+|.+. .||..++++++|++|++++|+++ .|..
T Consensus 472 ~lP~~~y~lq-~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 472 MLPECLYELQ-TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred cchHHHhhHH-HHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence 2344444444 5666667778888777777999999999999999998 78888999999999999999997 5543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-37 Score=310.44 Aligned_cols=394 Identities=22% Similarity=0.247 Sum_probs=222.5
Q ss_pred CcCEEEccCCCCCCCCchHHH-hc-CCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCC
Q 041562 122 YIKIIDLSSNHFQGKIPSTIF-RL-TQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLK 199 (653)
Q Consensus 122 ~L~~L~Ls~n~l~~~ip~~~~-~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 199 (653)
.-+.||.+++.+. .+...-. +. .+.-+.||+++|.+....+..+. ++++|+++++.+|.++ .+|.......+|+
T Consensus 53 ~~~lldcs~~~le-a~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~--nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~ 128 (873)
T KOG4194|consen 53 NTRLLDCSDRELE-AIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFY--NLPNLQEVNLNKNELT-RIPRFGHESGHLE 128 (873)
T ss_pred CceeeecCccccc-cccccccCCcCccceeeeeccccccccCcHHHHh--cCCcceeeeeccchhh-hccccccccccee
Confidence 3455777777665 2211100 00 12234466666655554333222 4555555555555555 4454444444555
Q ss_pred EEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCc
Q 041562 200 TFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNS 279 (653)
Q Consensus 200 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 279 (653)
.|+|.+|.|+..-.+.+..++.|+.|||+.|.|+......|..-.++++|+|++|+++...-..|..+.+|..|.|++|+
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 55555555554444445555555555555555553333444444455555555555554444445555555555555555
Q ss_pred CcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCch
Q 041562 280 LSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISP 359 (653)
Q Consensus 280 l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 359 (653)
++...+..|.++++|+.|+|..|++. .+....|.++++|+.|.+..|.+...-...|..+.++++|+|+.|+++..-..
T Consensus 209 ittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred ccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence 55433344444555555555555554 33233455555555555555555544444455555555555555555544444
Q ss_pred hhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhh
Q 041562 360 GIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSW 439 (653)
Q Consensus 360 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 439 (653)
++..++.|+.|++++|.|..+. ++.. .-+++|++|+|++|+++...+..
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih--------------------------~d~W-----sftqkL~~LdLs~N~i~~l~~~s 336 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIH--------------------------IDSW-----SFTQKLKELDLSSNRITRLDEGS 336 (873)
T ss_pred cccccchhhhhccchhhhheee--------------------------cchh-----hhcccceeEeccccccccCChhH
Confidence 4555555555555555544332 2211 23467777777777777666777
Q ss_pred hcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCccc
Q 041562 440 IGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNF 519 (653)
Q Consensus 440 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 519 (653)
|..+..|++|+|++|.+...-...|..+++|+.|||++|.++..+.++-...
T Consensus 337 f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f---------------------------- 388 (873)
T KOG4194|consen 337 FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF---------------------------- 388 (873)
T ss_pred HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh----------------------------
Confidence 7777778888888887776555667777788888888887765544321111
Q ss_pred ccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCC
Q 041562 520 IGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLS 599 (653)
Q Consensus 520 ~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~ 599 (653)
..++ +|+.|+|.+|++..+.-..|..+.+||.|||.+|.|...-|..|..+ .|+
T Consensus 389 ------------------------~gl~-~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk 442 (873)
T KOG4194|consen 389 ------------------------NGLP-SLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELK 442 (873)
T ss_pred ------------------------ccch-hhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhh
Confidence 1122 67778888888875555678888888888888888877777777777 777
Q ss_pred eeecCC
Q 041562 600 AFNVAE 605 (653)
Q Consensus 600 ~L~ls~ 605 (653)
.|.+..
T Consensus 443 ~Lv~nS 448 (873)
T KOG4194|consen 443 ELVMNS 448 (873)
T ss_pred hhhhcc
Confidence 776543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-37 Score=308.00 Aligned_cols=367 Identities=22% Similarity=0.227 Sum_probs=187.7
Q ss_pred CEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEc
Q 041562 101 SHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDL 179 (653)
Q Consensus 101 ~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L 179 (653)
+.||+|+|.+...-+..|.+ ++|+.+++.+|.++ .||... ....+|+.|+|.+|.++..-..++. .++.||+|||
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~--~l~alrslDL 156 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELS--ALPALRSLDL 156 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHH--hHhhhhhhhh
Confidence 34555555554444444433 45555555555544 444421 1233355555555544443333222 2445555555
Q ss_pred cCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcc
Q 041562 180 SNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGL 259 (653)
Q Consensus 180 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 259 (653)
|.|.++......|..-.++++|+|++|.|+..-...|..+.+|..|.|+.|+|+...+..|.++++|+.|+|..|++.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 55555443334444444555555555555544444455555555555555555543344444455555555555554422
Q ss_pred cCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcC
Q 041562 260 IPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS 339 (653)
Q Consensus 260 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 339 (653)
---.|.++++|+.|.|..|++...-...|..+.++++|+|+.|+++ .+....+-+++.|+.|++++|.|....+..+..
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhh
Confidence 1223445555555555555555444444555555555555555554 333334445555555555555555444555555
Q ss_pred CCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCC
Q 041562 340 CKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGF 419 (653)
Q Consensus 340 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 419 (653)
+++|+.|+|++|+++...+..|..+..|++|.|++|.++.+.. ..|..+++|+.|+++.|.+...+.+ ....|.++
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e--~af~~lssL~~LdLr~N~ls~~IED--aa~~f~gl 391 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE--GAFVGLSSLHKLDLRSNELSWCIED--AAVAFNGL 391 (873)
T ss_pred cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh--hHHHHhhhhhhhcCcCCeEEEEEec--chhhhccc
Confidence 5555555555555555555555555555555555555554433 2344455555555555555555444 22334556
Q ss_pred CCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccC
Q 041562 420 KNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSN 477 (653)
Q Consensus 420 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 477 (653)
++|+.|++.+|++....-.+|..++.|+.|||.+|.|-..-|..|..+ .|++|.+..
T Consensus 392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 666666666666664444566666666666666666666666666665 566655543
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.7e-39 Score=311.78 Aligned_cols=486 Identities=25% Similarity=0.333 Sum_probs=383.2
Q ss_pred cCCCCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCC
Q 041562 95 GNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSI 174 (653)
Q Consensus 95 ~~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L 174 (653)
..-.-|+.|++++|.+....++.-....|.+|++.+|+++ +.|+++.. +..++.++.++|+++..++. ++ .+.+|
T Consensus 42 W~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~-l~~l~~l~vs~n~ls~lp~~-i~--s~~~l 116 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAIGE-LEALKSLNVSHNKLSELPEQ-IG--SLISL 116 (565)
T ss_pred hhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHHHH-HHHHHHhhcccchHhhccHH-Hh--hhhhh
Confidence 3345688999999998855555444488999999999999 88888765 78899999999998876543 33 57899
Q ss_pred CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccC
Q 041562 175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSN 254 (653)
Q Consensus 175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 254 (653)
+.+++++|.+. ..|..++.+..|..++..+|+++ ..|.++..+.+|..+++.+|++.. .|+..-+++.|++||.-.|
T Consensus 117 ~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N 193 (565)
T KOG0472|consen 117 VKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSN 193 (565)
T ss_pred hhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchh
Confidence 99999999998 77889999999999999999998 788899999999999999999984 4544555999999999998
Q ss_pred cCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCC
Q 041562 255 SLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLP 334 (653)
Q Consensus 255 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 334 (653)
-++ .+|+.++.+.+|+.|+|.+|++. .+| .|..|..|++++++.|.+. .+|+.....++++.+||+..|+++ ..|
T Consensus 194 ~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~P 268 (565)
T KOG0472|consen 194 LLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVP 268 (565)
T ss_pred hhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCc
Confidence 887 67889999999999999999998 677 6999999999999999998 788877789999999999999998 789
Q ss_pred ccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccC---CCCCcE----EECCCCCCCcc-
Q 041562 335 ITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMG---CKNLKV----LIIPLNFMDET- 406 (653)
Q Consensus 335 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~---l~~L~~----L~l~~n~~~~~- 406 (653)
..+.-+.+|..||+++|.++ ..|..++++ .|+.|-+.+|.+..+...+-.-+. ++.|+. =.++.. -++.
T Consensus 269 de~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s-e~~~e 345 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS-EGGTE 345 (565)
T ss_pred hHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC-ccccc
Confidence 99999999999999999998 567789999 999999999998765433211100 111111 001111 0010
Q ss_pred -CCC--cccccCCCCCCCcCEEEccCCcCcccchhhhcCCcc---CCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcC
Q 041562 407 -MPD--NDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKK---LQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLI 480 (653)
Q Consensus 407 -~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 480 (653)
.++ ...+.......+.+.|++++-+++ .+|+....-.. ....+++.|++. ++|..+..+..+...-+..|+.
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNK 423 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCc
Confidence 000 001111223456888999999998 56665544444 788999999998 7887777776665544444444
Q ss_pred cccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccC
Q 041562 481 SGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNF 560 (653)
Q Consensus 481 ~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l 560 (653)
.+.+|..++.+++++.++++++ +...+|.+.+.+. .|+.||+|+|+|
T Consensus 424 isfv~~~l~~l~kLt~L~L~NN--------------------------------~Ln~LP~e~~~lv-~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 424 ISFVPLELSQLQKLTFLDLSNN--------------------------------LLNDLPEEMGSLV-RLQTLNLSFNRF 470 (565)
T ss_pred cccchHHHHhhhcceeeecccc--------------------------------hhhhcchhhhhhh-hhheeccccccc
Confidence 4588888999999988887653 4456788999999 899999999999
Q ss_pred ccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCC
Q 041562 561 SGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDL 632 (653)
Q Consensus 561 ~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~l 632 (653)
. .+|..+..+..+|.+-.++|++...-|+.+.++..|.+||+.+|.+...-|..+.+.++....+.|||+-
T Consensus 471 r-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 471 R-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred c-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 8 8999999999999998899999866666699999999999999999954455588999999999999975
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=8.9e-35 Score=294.26 Aligned_cols=368 Identities=27% Similarity=0.413 Sum_probs=297.0
Q ss_pred CCCCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEE
Q 041562 171 FCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL 249 (653)
Q Consensus 171 l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 249 (653)
++-.+-.|+++|.++| ..|..+..+++++.|.|....+. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 4456677778888774 67888888888888888888877 78888888899999999988887 555678888889999
Q ss_pred EcccCcCCc-ccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCc
Q 041562 250 ELYSNSLTG-LIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL 328 (653)
Q Consensus 250 ~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~ 328 (653)
.+..|++.. -+|..+..+..|..|||++|++. ..|..+..-+++-.|+|++|++. .||...|.++..|-.|||++|+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 998888763 36778888999999999999998 78888888899999999999997 7887778888889999999999
Q ss_pred ccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCC
Q 041562 329 FTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMP 408 (653)
Q Consensus 329 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 408 (653)
+. .+|..+..+..|++|+|++|.+...-...+..+++|+.|.+++.+-+- ..+|
T Consensus 162 Le-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl-------------------------~N~P 215 (1255)
T KOG0444|consen 162 LE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL-------------------------DNIP 215 (1255)
T ss_pred hh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-------------------------hcCC
Confidence 87 677788888889999999888764433344456667777777665331 1112
Q ss_pred CcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccc
Q 041562 409 DNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEF 488 (653)
Q Consensus 409 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 488 (653)
. ++.++.+|..+|++.|.+. ..|+.+.++++|+.|+||+|+|+ .+.-..+...+|+.|++|+|+++ .+|.++
T Consensus 216 t-----sld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~av 287 (1255)
T KOG0444|consen 216 T-----SLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAV 287 (1255)
T ss_pred C-----chhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHH
Confidence 1 1235677888888888888 78999999999999999999988 44455667778899999999998 889999
Q ss_pred cCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCcccccccc
Q 041562 489 CRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQI 568 (653)
Q Consensus 489 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l 568 (653)
+.++.|+.+...++. .++ ..||+.||.+. .|+++..++|.+. ..|+.+
T Consensus 288 cKL~kL~kLy~n~Nk-----------------------------L~F-eGiPSGIGKL~-~Levf~aanN~LE-lVPEgl 335 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNK-----------------------------LTF-EGIPSGIGKLI-QLEVFHAANNKLE-LVPEGL 335 (1255)
T ss_pred hhhHHHHHHHhccCc-----------------------------ccc-cCCccchhhhh-hhHHHHhhccccc-cCchhh
Confidence 988888776654321 112 24799999999 9999999999998 899999
Q ss_pred ccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCccc
Q 041562 569 SQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR 609 (653)
Q Consensus 569 ~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 609 (653)
..+..|+.|.|++|++. .+|+.+.-++-|+.||+..|+-.
T Consensus 336 cRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 99999999999999998 89999999999999999999755
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.9e-34 Score=290.52 Aligned_cols=385 Identities=26% Similarity=0.388 Sum_probs=279.9
Q ss_pred CCCCCEEECCCCCCC-CCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCC
Q 041562 97 LTHLSHLNLSHNRLS-GEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSI 174 (653)
Q Consensus 97 l~~L~~L~Ls~n~~~-~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L 174 (653)
|+-.|-.|+++|.|+ +.+|..... +.++.|.|....+. .+|+++.. +. +|
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~-lq--------------------------kL 57 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSR-LQ--------------------------KL 57 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHH-Hh--------------------------hh
Confidence 444555566666665 334444443 55555555555555 66665442 44 44
Q ss_pred CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCC-CccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEccc
Q 041562 175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG-SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS 253 (653)
Q Consensus 175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 253 (653)
++|.+++|++. .+...+..++.|+.+.+..|++.. .+|..+..+..|+.|||+.|++. ..|..+..-+++-+|+|++
T Consensus 58 EHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~ 135 (1255)
T KOG0444|consen 58 EHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSY 135 (1255)
T ss_pred hhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEccc
Confidence 44444444444 333455566666666666666543 57778888888888888888887 6788888888888888888
Q ss_pred CcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc-cc
Q 041562 254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT-GS 332 (653)
Q Consensus 254 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 332 (653)
|++..+....|.+++.|-.|||++|++. .+|..+..+..|+.|+|++|.+. ......+..+++|++|.+++.+-+ ..
T Consensus 136 N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N 213 (1255)
T KOG0444|consen 136 NNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDN 213 (1255)
T ss_pred CccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhc
Confidence 8887543344667888888888888887 66777888888888888888775 222224455667778888877544 35
Q ss_pred CCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCccc
Q 041562 333 LPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDR 412 (653)
Q Consensus 333 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 412 (653)
+|.++..+.+|..++++.|.+. ..|+.+..+++|+.|+||+|+++.+....
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~---------------------------- 264 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTE---------------------------- 264 (1255)
T ss_pred CCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccH----------------------------
Confidence 7888888889999999999887 78888888999999999999887554322
Q ss_pred ccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCcc-CCchhhcCCCCCCEEEccCCcCcccCCccccCC
Q 041562 413 LTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG-SVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRL 491 (653)
Q Consensus 413 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 491 (653)
....+|+.|+++.|+++ .+|+++.++++|+.|.+.+|+++- -+|..|+++.+|+.+..++|.+. ..|+.+++|
T Consensus 265 ----~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC 338 (1255)
T KOG0444|consen 265 ----GEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRC 338 (1255)
T ss_pred ----HHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhh
Confidence 13468999999999999 899999999999999999998874 48999999999999999999886 566665555
Q ss_pred CCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccC
Q 041562 492 PALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQL 571 (653)
Q Consensus 492 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l 571 (653)
. .|+.|.|++|++- .+|+.+.-+
T Consensus 339 ~--------------------------------------------------------kL~kL~L~~NrLi-TLPeaIHlL 361 (1255)
T KOG0444|consen 339 V--------------------------------------------------------KLQKLKLDHNRLI-TLPEAIHLL 361 (1255)
T ss_pred H--------------------------------------------------------HHHHhccccccee-echhhhhhc
Confidence 4 6788999999988 789999999
Q ss_pred CCCCeEeCCCCeeeeecCcccccCCCCCeeecCC
Q 041562 572 TNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAE 605 (653)
Q Consensus 572 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 605 (653)
+.|+.||+..|.-.-..|.-=..-+.|+.-|+.+
T Consensus 362 ~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 362 PDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDF 395 (1255)
T ss_pred CCcceeeccCCcCccCCCCcchhhhcceeeecce
Confidence 9999999999976644443222235666666654
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-33 Score=298.22 Aligned_cols=466 Identities=28% Similarity=0.357 Sum_probs=295.5
Q ss_pred EEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEcc
Q 041562 76 VSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVS 154 (653)
Q Consensus 76 v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls 154 (653)
+..||++++.+. ..|..+..+.+|+.|+++.|.+. ..|..... .+|+++.|.+|.+. ..|.++. .+++|++|+++
T Consensus 47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~-~lknl~~LdlS 122 (1081)
T KOG0618|consen 47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASIS-ELKNLQYLDLS 122 (1081)
T ss_pred eEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHH-hhhcccccccc
Confidence 556666655443 55566666666666666666665 34433333 66666666666666 6665543 36666666666
Q ss_pred CCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcc
Q 041562 155 NNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISG 234 (653)
Q Consensus 155 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~ 234 (653)
+|.|...++.-. .++.++.+..++|.-... ++... ++.+++..|.+.+.++.++..++. .|+|.+|.+.
T Consensus 123 ~N~f~~~Pl~i~---~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~- 191 (1081)
T KOG0618|consen 123 FNHFGPIPLVIE---VLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME- 191 (1081)
T ss_pred hhccCCCchhHH---hhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-
Confidence 666654433211 345555666666621111 11111 566666666666666666655555 5667766665
Q ss_pred cccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhcc
Q 041562 235 SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFS 314 (653)
Q Consensus 235 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~ 314 (653)
-..+.++.+|+.+....|++.... -.-++|+.|+.++|.++...+. ..-.+|+++++++|+++ .+| ..++
T Consensus 192 --~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp-~wi~ 261 (1081)
T KOG0618|consen 192 --VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLP-EWIG 261 (1081)
T ss_pred --hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cch-HHHH
Confidence 223555666666666666665321 1235666677777766632221 22346777777777776 455 3666
Q ss_pred CCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCC-C
Q 041562 315 TLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKN-L 393 (653)
Q Consensus 315 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~-L 393 (653)
.+.+|+.++..+|.++ .+|..+....+|+.|.+..|.+. .+|+....++.|++|+|..|++..++..+ +..... |
T Consensus 262 ~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~--l~v~~~~l 337 (1081)
T KOG0618|consen 262 ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNF--LAVLNASL 337 (1081)
T ss_pred hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHH--HhhhhHHH
Confidence 7777777777777775 56666666677777777777776 45555666777777777777776666522 222222 4
Q ss_pred cEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEE
Q 041562 394 KVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHI 473 (653)
Q Consensus 394 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 473 (653)
..+..+.|.+.... ... -..++.|+.|++.+|.+++.....+.+.++|++|+|++|++.......+.++..|++|
T Consensus 338 ~~ln~s~n~l~~lp-~~~----e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL 412 (1081)
T KOG0618|consen 338 NTLNVSSNKLSTLP-SYE----ENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEEL 412 (1081)
T ss_pred HHHhhhhccccccc-ccc----chhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHH
Confidence 44555555443221 111 1245779999999999998888889999999999999999986555678899999999
Q ss_pred EccCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCee
Q 041562 474 DFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHML 553 (653)
Q Consensus 474 ~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L 553 (653)
+||+|+++ .+|..+..+..|+++...++.. -..| ++..++ .|+.+
T Consensus 413 ~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l--------------------------------~~fP-e~~~l~-qL~~l 457 (1081)
T KOG0618|consen 413 NLSGNKLT-TLPDTVANLGRLHTLRAHSNQL--------------------------------LSFP-ELAQLP-QLKVL 457 (1081)
T ss_pred hcccchhh-hhhHHHHhhhhhHHHhhcCCce--------------------------------eech-hhhhcC-cceEE
Confidence 99999998 7888888888888777654322 1234 666677 89999
Q ss_pred ecCCccCccc-cccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCC
Q 041562 554 DLSHNNFSGN-IPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG 615 (653)
Q Consensus 554 ~Ls~N~l~~~-~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 615 (653)
|+|.|+++.. +|..... ++|++|||++|.-...--..|..+.++..+++.-| .+|++
T Consensus 458 DlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~----~~~d~ 515 (1081)
T KOG0618|consen 458 DLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN----NTPDG 515 (1081)
T ss_pred ecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC----CCCcc
Confidence 9999998754 3433333 78999999999843333355666677777777666 45554
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=8.2e-34 Score=300.44 Aligned_cols=460 Identities=29% Similarity=0.357 Sum_probs=279.0
Q ss_pred EEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEcc
Q 041562 76 VSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVS 154 (653)
Q Consensus 76 v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls 154 (653)
++.|++..|-+-..--+.+.+.-+|+.||+++|.+. .+|..+.. ..|+.|+++.|.+. .+|.... ++.+|++++|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~-~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCS-NMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhh-hhhcchhheec
Confidence 455555544433221233333344666666666654 44544444 66666666666665 5554433 35666666666
Q ss_pred CCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcc
Q 041562 155 NNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISG 234 (653)
Q Consensus 155 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~ 234 (653)
+|.+...+ ..+. .+.+|++|++++|.+. .+|..+..++.+..+..++|..... ++... ++.+++..|.+.+
T Consensus 100 ~n~l~~lP-~~~~--~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~ 170 (1081)
T KOG0618|consen 100 NNRLQSLP-ASIS--ELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGG 170 (1081)
T ss_pred cchhhcCc-hhHH--hhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhccc
Confidence 66554332 2221 3556666666666665 5555666666666666666522111 12222 6666666666666
Q ss_pred cccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhcc
Q 041562 235 SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFS 314 (653)
Q Consensus 235 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~ 314 (653)
.++..+..++. .|+|.+|.+. . ..+..+.+|+.|....|++... --.-++|+.|+.++|.++ .+. .-.
T Consensus 171 ~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~-~~~--~~p 238 (1081)
T KOG0618|consen 171 SFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLT-TLD--VHP 238 (1081)
T ss_pred chhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcce-eec--ccc
Confidence 66666666655 6777777766 2 2456667777777777776632 123367778888888776 222 123
Q ss_pred CCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCc
Q 041562 315 TLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLK 394 (653)
Q Consensus 315 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 394 (653)
...+|++++++.|+++ .+|.|+..+.+|+.++..+|+++ .+|..+...++|+.|.+.+|.+..++. ...+.+.|+
T Consensus 239 ~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~---~le~~~sL~ 313 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPP---FLEGLKSLR 313 (1081)
T ss_pred ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCC---cccccceee
Confidence 3457888888888887 56688888888888888888885 677777788888888888888877664 345677888
Q ss_pred EEECCCCCCCccCCCcccccCCCCC-CCcCEEEccCCcCcccchhh-hcCCccCCeeeCcCCcCccCCchhhcCCCCCCE
Q 041562 395 VLIIPLNFMDETMPDNDRLTSANGF-KNLQVLGLAECKLKGQVPSW-IGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFH 472 (653)
Q Consensus 395 ~L~l~~n~~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 472 (653)
.|++..|.+..- |+.+. .-. ..+..|+.+.|++. ..|.. =...+.|+.|.+.+|.++...-..+.++++|+.
T Consensus 314 tLdL~~N~L~~l-p~~~l----~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 314 TLDLQSNNLPSL-PDNFL----AVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred eeeehhcccccc-chHHH----hhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence 888888877533 33111 111 23566666666666 33321 123567888999999998877777888899999
Q ss_pred EEccCCcCcccCC-ccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccC
Q 041562 473 IDFSNNLISGEFP-KEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLH 551 (653)
Q Consensus 473 L~Ls~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~ 551 (653)
|+|++|++. .+| ..+.+++.|+.++++++ ....+|..+..++ .|+
T Consensus 388 LhLsyNrL~-~fpas~~~kle~LeeL~LSGN--------------------------------kL~~Lp~tva~~~-~L~ 433 (1081)
T KOG0618|consen 388 LHLSYNRLN-SFPASKLRKLEELEELNLSGN--------------------------------KLTTLPDTVANLG-RLH 433 (1081)
T ss_pred eeecccccc-cCCHHHHhchHHhHHHhcccc--------------------------------hhhhhhHHHHhhh-hhH
Confidence 999999887 444 44555665555555442 1123455555555 666
Q ss_pred eeecCCccCccccccccccCCCCCeEeCCCCeeee-ecCcccccCCCCCeeecCCCc
Q 041562 552 MLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSG-EIPVSLKRLHFLSAFNVAENN 607 (653)
Q Consensus 552 ~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~-~ip~~l~~l~~L~~L~ls~N~ 607 (653)
+|...+|.+. ..| .+.+++.|+.+|+|.|+++. .+|.... -+.|++||+++|.
T Consensus 434 tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 434 TLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred HHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 6666666666 455 55666666666666666653 2232222 1566666666664
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=9.1e-24 Score=249.81 Aligned_cols=341 Identities=19% Similarity=0.203 Sum_probs=187.8
Q ss_pred CCCCCCCCEEEcccCC------CCCCccccccCCC-CCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccc
Q 041562 192 LGSCSRLKTFRAGFNY------LTGSLPDDIYTAT-SLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDI 264 (653)
Q Consensus 192 ~~~l~~L~~L~L~~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l 264 (653)
|..+++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|++. .++..+
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~ 630 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV 630 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc
Confidence 4445555555543332 1122344443332 3555555555444 344443 3445555555555544 234444
Q ss_pred cCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCC
Q 041562 265 GKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLT 344 (653)
Q Consensus 265 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 344 (653)
..+++|+.|+|+++...+.+|. +..+++|+.|++++|.....+|. .+..+++|+.|++++|...+.+|..+ ++++|+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 5555555555555433334442 44555555555555544334442 44555555555555543333444433 455555
Q ss_pred eEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCC---ccCCCcccccCCCCCCC
Q 041562 345 AVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMD---ETMPDNDRLTSANGFKN 421 (653)
Q Consensus 345 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~~~~~~~~~~~~ 421 (653)
.|++++|...+.+|.. ..+|++|++++|.+..+|..+ .+++|+.|.+..+... +.+..... ......++
T Consensus 708 ~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~----~l~~L~~L~l~~~~~~~l~~~~~~l~~-~~~~~~~s 779 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL----RLENLDELILCEMKSEKLWERVQPLTP-LMTMLSPS 779 (1153)
T ss_pred EEeCCCCCCccccccc---cCCcCeeecCCCccccccccc----cccccccccccccchhhccccccccch-hhhhcccc
Confidence 5555555433333321 235555666665555444322 3444555544432211 00000000 00113467
Q ss_pred cCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccc
Q 041562 422 LQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKN 501 (653)
Q Consensus 422 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~ 501 (653)
|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|...
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~------------- 845 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS------------- 845 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc-------------
Confidence 8888888887777788888888888888888876555677655 67888888888875433332210
Q ss_pred cccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCC
Q 041562 502 KANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSK 581 (653)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~ 581 (653)
. +|+.|+|++|.++ .+|.++..+++|+.|+|++
T Consensus 846 ---------------------------------------------~-nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 846 ---------------------------------------------T-NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred ---------------------------------------------c-ccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 0 5778888888887 6788888888888888888
Q ss_pred CeeeeecCcccccCCCCCeeecCCCc
Q 041562 582 NHLSGEIPVSLKRLHFLSAFNVAENN 607 (653)
Q Consensus 582 N~l~~~ip~~l~~l~~L~~L~ls~N~ 607 (653)
|+-...+|..+..++.|+.+++++|.
T Consensus 879 C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 879 CNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCcCccCcccccccCCCeeecCCCc
Confidence 54444677777788888888888875
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=3.6e-23 Score=244.75 Aligned_cols=363 Identities=22% Similarity=0.263 Sum_probs=205.7
Q ss_pred CCCEEEEEcCCCCcce--eccccccCCCCCCEEECCCCCC------CCCCCccccC--CCcCEEEccCCCCCCCCchHHH
Q 041562 73 NGRVSHLWLPWKGLTG--TISLSIGNLTHLSHLNLSHNRL------SGEFPSSLSS--NYIKIIDLSSNHFQGKIPSTIF 142 (653)
Q Consensus 73 ~~~v~~L~L~~~~l~g--~~~~~l~~l~~L~~L~Ls~n~~------~~~~p~~~~~--~~L~~L~Ls~n~l~~~ip~~~~ 142 (653)
+.+|.++.+....+.. .-+.+|..+++|+.|.+..+.. ...+|..+.. .+|+.|++.++.+. .+|..+
T Consensus 531 ~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f- 608 (1153)
T PLN03210 531 TKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF- 608 (1153)
T ss_pred cceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-
Confidence 4567777665544432 1235688999999999976643 2334554443 56777777777766 666654
Q ss_pred hcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCC
Q 041562 143 RLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSL 222 (653)
Q Consensus 143 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 222 (653)
...+|++|++.+|.+..... . ...+++|++|+++++.....+| .+..+++|++|++++|.....+|..+..+++|
T Consensus 609 -~~~~L~~L~L~~s~l~~L~~-~--~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L 683 (1153)
T PLN03210 609 -RPENLVKLQMQGSKLEKLWD-G--VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKL 683 (1153)
T ss_pred -CccCCcEEECcCcccccccc-c--cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCC
Confidence 25667777777766654322 1 1246666666666655444444 35566666666666665555666666666666
Q ss_pred CEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCC
Q 041562 223 EQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN 302 (653)
Q Consensus 223 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 302 (653)
+.|++++|.....+|..+ ++++|++|++++|...+.+|.. ..+|++|++++|.+. .+|..+ .+++|++|++.++
T Consensus 684 ~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~ 757 (1153)
T PLN03210 684 EDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEM 757 (1153)
T ss_pred CEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-ccccccccccccc
Confidence 666666654434455444 5666666666666544444432 245566666666654 444433 3555555555543
Q ss_pred cCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCC-CCCCCC
Q 041562 303 FFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNN-SLTNIT 381 (653)
Q Consensus 303 ~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~ 381 (653)
... .+.. .+....+......++|+.|++++|...+.+|..++.+++|+.|++++| .+..+|
T Consensus 758 ~~~-~l~~-----------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 758 KSE-KLWE-----------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred chh-hccc-----------------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 211 0000 000001111122345555555555544455555555555555555554 233333
Q ss_pred cchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCc
Q 041562 382 GAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVP 461 (653)
Q Consensus 382 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~ 461 (653)
.. ..+++|+.|++++|.....+|. ...+|++|+|++|.++ .+|.++..+++|++|++++|+-...+|
T Consensus 820 ~~----~~L~sL~~L~Ls~c~~L~~~p~--------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 820 TG----INLESLESLDLSGCSRLRTFPD--------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVS 886 (1153)
T ss_pred CC----CCccccCEEECCCCCccccccc--------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccC
Confidence 22 1455566666655544333332 1256778888888777 577777788888888888765444566
Q ss_pred hhhcCCCCCCEEEccCCc
Q 041562 462 RFLGNMSSLFHIDFSNNL 479 (653)
Q Consensus 462 ~~~~~l~~L~~L~Ls~N~ 479 (653)
..+..+++|+.+++++|.
T Consensus 887 ~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 887 LNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccccCCCeeecCCCc
Confidence 667777788888877774
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=8.6e-26 Score=218.52 Aligned_cols=277 Identities=20% Similarity=0.195 Sum_probs=210.3
Q ss_pred CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEE-EccCCCCCCCCchHHHhcCCCCcEE
Q 041562 74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKII-DLSSNHFQGKIPSTIFRLTQNLITF 151 (653)
Q Consensus 74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L-~Ls~n~l~~~ip~~~~~~l~~L~~L 151 (653)
...+.|+|..|+|+-.-+.+|..+++||.||||+|+|+.+-|..|.. .+|..| +.++|+|+ .+|...|..+..|+.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 36889999999999777789999999999999999999999999987 555554 55559999 9999999999999999
Q ss_pred EccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCC------------CccccccCC
Q 041562 152 NVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG------------SLPDDIYTA 219 (653)
Q Consensus 152 ~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~p~~l~~l 219 (653)
.+.-|++.-.....+. .+++|..|.+..|.+.......|..+..++.+.+..|.+.. ..|..++..
T Consensus 146 llNan~i~Cir~~al~--dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 146 LLNANHINCIRQDALR--DLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred hcChhhhcchhHHHHH--HhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 9999998876655544 68999999999999986555589999999999998887431 122233333
Q ss_pred CCCCEEeccCCcCcccccccccC-CCCCcEEEcccCcCCcccCc-cccCCCCCCeEEeecCcCcccCCccccCCCCCcEE
Q 041562 220 TSLEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLTGLIPR-DIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLL 297 (653)
Q Consensus 220 ~~L~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 297 (653)
.-..-..+.+.++....+..+.. +..+..--.+.+...+..|. .|..+++|+.|+|++|+++++-+.+|.+...+++|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 33333334444444332322221 12222222233334444443 47889999999999999998888889999999999
Q ss_pred EccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccc
Q 041562 298 NLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE 354 (653)
Q Consensus 298 ~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 354 (653)
.|..|++. .+....|.++..|+.|+|.+|+|+...|..|..+..|.+|++-.|.+.
T Consensus 304 ~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 304 YLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred hcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 99999887 666668888999999999999999888888888899999998887654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=7.5e-22 Score=216.98 Aligned_cols=42 Identities=24% Similarity=0.389 Sum_probs=24.1
Q ss_pred cCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCccc
Q 041562 550 LHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSL 592 (653)
Q Consensus 550 L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l 592 (653)
|+.|++++|+++ .+|..+.++++|+.|+|++|++++.+|..+
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 445556666655 455555566666666666666665555444
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=3.9e-24 Score=207.12 Aligned_cols=396 Identities=20% Similarity=0.185 Sum_probs=189.1
Q ss_pred CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccC-CcCcccccccccCCCCCcEEEc
Q 041562 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSF-NHISGSIKNGIVNLTSLRILEL 251 (653)
Q Consensus 173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L 251 (653)
.-..++|..|.|+...+..|+.+++|+.|||++|.|+..-|.+|..++.|.+|-+.+ |+|+......|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 445666666666655556666666666666666666666666666666655555444 5666444455666666666666
Q ss_pred ccCcCCcccCccccCCCCCCeEEeecCcCcccCCc-cccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562 252 YSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPS-SLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330 (653)
Q Consensus 252 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 330 (653)
.-|++.-...+.|..+++|..|.+.+|.+. .++. .+..+..++.+.+..|.+.. ..+++.+....
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic------dCnL~wla~~~------- 213 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC------DCNLPWLADDL------- 213 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc------ccccchhhhHH-------
Confidence 666665555555666666666666666655 3333 55556666666665554321 11111111100
Q ss_pred ccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEE--ECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCC
Q 041562 331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFL--SLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMP 408 (653)
Q Consensus 331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L--~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 408 (653)
...|..++......-..+.+.++..+-+..|... ++.+ .++.............|..+++|+.+++++|.+++.-+
T Consensus 214 a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 214 AMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred hhchhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 0112222222222222223332221111111100 1111 00000000001111234444444444444444443332
Q ss_pred CcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCC---
Q 041562 409 DNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFP--- 485 (653)
Q Consensus 409 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--- 485 (653)
. +|.+...+++|.|..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|..|+|-.|.+.-.--
T Consensus 292 ~-----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w 366 (498)
T KOG4237|consen 292 G-----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW 366 (498)
T ss_pred h-----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH
Confidence 2 12345556666666666654444455666666666666666665556666666666666665555421100
Q ss_pred --ccc--------cCCC---CCCcccccccccccccccccccCCcccccccccccccccc-----------cc----eee
Q 041562 486 --KEF--------CRLP---ALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQ-----------YT----WKT 537 (653)
Q Consensus 486 --~~~--------~~l~---~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~----l~g 537 (653)
+.+ ..+. .++.+.+++.. +..+............-...+.. .. +--
T Consensus 367 l~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~------~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~ 440 (498)
T KOG4237|consen 367 LGEWLRKKSVVGNPRCQSPGFVRQIPISDVA------FGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPR 440 (498)
T ss_pred HHHHHhhCCCCCCCCCCCCchhccccchhcc------ccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCC
Confidence 000 0000 00011111000 00000000000000000000000 00 112
Q ss_pred eCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCC
Q 041562 538 TASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAEN 606 (653)
Q Consensus 538 ~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 606 (653)
.||. .-.+|++.+|.++ .+|.. .+.+| .+|+|+|+++..--..|.+++.|.+|-||||
T Consensus 441 ~iP~-------d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 441 GIPV-------DVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CCCc-------hhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 2333 3457889999999 67776 67788 9999999998655577889999999999987
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=5.5e-21 Score=210.23 Aligned_cols=264 Identities=22% Similarity=0.242 Sum_probs=130.1
Q ss_pred CcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEE
Q 041562 122 YIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTF 201 (653)
Q Consensus 122 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 201 (653)
+-..|+++.+.++ .+|..+. ++|+.|++++|+++..+. ..++|++|++++|+++. +|.. .++|+.|
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~------lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L 267 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTS-LPVL---PPGLLEL 267 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC------CCCCCcEEEecCCccCc-ccCc---cccccee
Confidence 3556667776666 5666543 356666666666664321 23455555555555552 2321 2344555
Q ss_pred EcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCc
Q 041562 202 RAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLS 281 (653)
Q Consensus 202 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 281 (653)
++++|.++ .+|.. .++|+.|++++|+++ .+|. ..++|+.|++++|+++
T Consensus 268 ~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---------------------------~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 268 SIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV---------------------------LPPGLQELSVSDNQLA 315 (788)
T ss_pred eccCCchh-hhhhc---hhhcCEEECcCCccc-cccc---------------------------cccccceeECCCCccc
Confidence 55555444 23321 133444444444444 2222 1234555555555444
Q ss_pred ccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhh
Q 041562 282 GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI 361 (653)
Q Consensus 282 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 361 (653)
+ +|.. ..+|+.|++++|.++ .+|. ...+|+.|++++|++++ +|.. ..+|+.|++++|.++. +|..
T Consensus 316 ~-Lp~l---p~~L~~L~Ls~N~L~-~LP~----lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l- 380 (788)
T PRK15387 316 S-LPAL---PSELCKLWAYNNQLT-SLPT----LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL- 380 (788)
T ss_pred c-CCCC---cccccccccccCccc-cccc----cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc-
Confidence 2 2221 123444555555554 2331 11345555555555552 3321 1345555555555552 3322
Q ss_pred cCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhc
Q 041562 362 VALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIG 441 (653)
Q Consensus 362 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 441 (653)
..+|+.|++++|+++.++.. .++|+.|++++|.+.. +|. ...+|+.|++++|+++ .+|..+.
T Consensus 381 --~~~L~~LdLs~N~Lt~LP~l------~s~L~~LdLS~N~Lss-IP~--------l~~~L~~L~Ls~NqLt-~LP~sl~ 442 (788)
T PRK15387 381 --PSGLKELIVSGNRLTSLPVL------PSELKELMVSGNRLTS-LPM--------LPSGLLSLSVYRNQLT-RLPESLI 442 (788)
T ss_pred --ccccceEEecCCcccCCCCc------ccCCCEEEccCCcCCC-CCc--------chhhhhhhhhccCccc-ccChHHh
Confidence 23456666666666544421 1344455555554442 232 1134566667777766 5666666
Q ss_pred CCccCCeeeCcCCcCccCCchhh
Q 041562 442 KLKKLQVLDLSFNQLTGSVPRFL 464 (653)
Q Consensus 442 ~l~~L~~L~Ls~n~l~~~~~~~~ 464 (653)
++++|+.|+|++|++++..+..+
T Consensus 443 ~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 443 HLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hccCCCeEECCCCCCCchHHHHH
Confidence 67777777777777766655544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=2e-20 Score=207.19 Aligned_cols=313 Identities=21% Similarity=0.328 Sum_probs=150.4
Q ss_pred cCCHHhHHHHHHhhhcCCCCC------CCCCCCCCCccccc----------------eEeCCCCCEEEEEcCCCCcceec
Q 041562 33 ACNQIDQDSLLSLGFNISSPG------LNWSSSTDCCLWEG----------------IKCDANGRVSHLWLPWKGLTGTI 90 (653)
Q Consensus 33 ~~~~~~~~~ll~~k~~~~~~~------~~W~~~~~~c~w~g----------------v~c~~~~~v~~L~L~~~~l~g~~ 90 (653)
...++|...+++..+.+..|+ +.|+..+++|.-.. |.|. .+.|+++..-+.......
T Consensus 59 ~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~-~~~vt~l~~~g~~~~~~~ 137 (754)
T PRK15370 59 TASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGG-GKSVTYTRVTESEQASSA 137 (754)
T ss_pred CCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecC-CCcccccccccccccccC
Confidence 345678889999999998887 45988889996554 5564 345666665442211110
Q ss_pred cccccCCCCCCEEEC----CCCCCCCCCC---ccc------cCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCc
Q 041562 91 SLSIGNLTHLSHLNL----SHNRLSGEFP---SSL------SSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNS 157 (653)
Q Consensus 91 ~~~l~~l~~L~~L~L----s~n~~~~~~p---~~~------~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~ 157 (653)
...- ..-.+-.. ..+.-.+..+ ... ...+...|+++++.++ .+|..+ .++|+.|++++|.
T Consensus 138 ~~~~---~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~ 210 (754)
T PRK15370 138 SGSK---DAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACI---PEQITTLILDNNE 210 (754)
T ss_pred CCCC---ChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCC
Confidence 0000 00000000 0000000000 000 0033445555555555 444432 2345555555555
Q ss_pred CcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCccccc
Q 041562 158 FTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIK 237 (653)
Q Consensus 158 l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~ 237 (653)
++..+ ..+ .++|++|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|++. .+|
T Consensus 211 LtsLP-~~l----~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP 278 (754)
T PRK15370 211 LKSLP-ENL----QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLP 278 (754)
T ss_pred CCcCC-hhh----ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccc
Confidence 55332 111 234555555555554 2333322 24555555555555 4444432 35556666655555 344
Q ss_pred ccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCC
Q 041562 238 NGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLL 317 (653)
Q Consensus 238 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~ 317 (653)
..+. ++|++|++++|++++ +|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.++ .+|. .+ .+
T Consensus 279 ~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~-~l--~~ 346 (754)
T PRK15370 279 ENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALT-SLPA-SL--PP 346 (754)
T ss_pred cccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCccc-cCCh-hh--cC
Confidence 4332 356666666665553 333222 34556666666655 2343322 45666666666555 2442 12 24
Q ss_pred CcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcc
Q 041562 318 KLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGA 383 (653)
Q Consensus 318 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 383 (653)
+|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+. ..|+.|++++|+++.++..
T Consensus 347 sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~s 406 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPES 406 (754)
T ss_pred cccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchh
Confidence 5666666666655 3444332 45666666666665 3343332 2455666666666555543
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.9e-19 Score=199.53 Aligned_cols=202 Identities=26% Similarity=0.385 Sum_probs=106.5
Q ss_pred CCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEcc
Q 041562 221 SLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQ 300 (653)
Q Consensus 221 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 300 (653)
+.+.|+++++.++ .+|..+. +.|+.|++++|+++. +|..+. ++|++|++++|+++ .+|..+. .+|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 4566777766666 3454442 356667777766663 344332 36666666666665 3454432 356666666
Q ss_pred CCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCC
Q 041562 301 SNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNI 380 (653)
Q Consensus 301 ~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 380 (653)
+|.+. .+|. .+ ..+|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++.+
T Consensus 250 ~N~L~-~LP~-~l--~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L 319 (754)
T PRK15370 250 INRIT-ELPE-RL--PSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL 319 (754)
T ss_pred CCccC-cCCh-hH--hCCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC
Confidence 66655 4443 12 134555566555555 3444332 345555555555542 222221 2344444444444332
Q ss_pred CcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCC
Q 041562 381 TGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSV 460 (653)
Q Consensus 381 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 460 (653)
+.. -.++|+.|++++|.+++ +|..+. ++|+.|++++|++. .+
T Consensus 320 P~~----------------------------------l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~L 361 (754)
T PRK15370 320 PET----------------------------------LPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VL 361 (754)
T ss_pred Ccc----------------------------------ccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cC
Confidence 211 11456666666666663 454442 56777777777766 45
Q ss_pred chhhcCCCCCCEEEccCCcCc
Q 041562 461 PRFLGNMSSLFHIDFSNNLIS 481 (653)
Q Consensus 461 ~~~~~~l~~L~~L~Ls~N~l~ 481 (653)
|..+. ++|+.|++++|+++
T Consensus 362 P~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 362 PETLP--PTITTLDVSRNALT 380 (754)
T ss_pred Chhhc--CCcCEEECCCCcCC
Confidence 54442 46777777777665
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=3.5e-19 Score=183.41 Aligned_cols=284 Identities=23% Similarity=0.201 Sum_probs=131.3
Q ss_pred EEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCC----ccccccCCCCCCEEeccCCcCcc------cccccccCCC
Q 041562 176 HLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGS----LPDDIYTATSLEQLSLSFNHISG------SIKNGIVNLT 244 (653)
Q Consensus 176 ~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~i~~------~~~~~l~~l~ 244 (653)
.|+|..+.+++ .....+..+.+|+.++++++.+++. ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 45666666652 3344455566677777777766432 34445555667777776666541 2233445556
Q ss_pred CCcEEEcccCcCCcccCccccCCCC---CCeEEeecCcCcc----cCCccccCC-CCCcEEEccCCcCccccCh---hhc
Q 041562 245 SLRILELYSNSLTGLIPRDIGKLTN---LESLVLHNNSLSG----SLPSSLKNC-INLTLLNLQSNFFEGDISV---FNF 313 (653)
Q Consensus 245 ~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~i~~---~~~ 313 (653)
+|++|++++|.+.+..+..+..+.+ |++|++++|++.+ .+...+..+ ++|+.|++++|.+++.... ..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 6666666666665444434433333 6666666655542 112223333 4555555555554421110 122
Q ss_pred cCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCc--chhhccCCC
Q 041562 314 STLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITG--AIRILMGCK 391 (653)
Q Consensus 314 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~~~~l~~l~ 391 (653)
..+++|++|++++|.+++... ..++..+...++|++|++++|.++.... ....+..++
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~--------------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGI--------------------RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred HhCCCcCEEECcCCCCchHHH--------------------HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 333444444444444432100 0111222233444444444444432110 001222333
Q ss_pred CCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcc----cchhhhcCCccCCeeeCcCCcCccC----Cchh
Q 041562 392 NLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG----QVPSWIGKLKKLQVLDLSFNQLTGS----VPRF 463 (653)
Q Consensus 392 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~~~~ 463 (653)
+|++|++++|.+.+..............+.|++|++++|.++. .+...+..+++|+++++++|.+... ....
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 4444444444333210000000000123566666676666652 2334455556677777777776643 2233
Q ss_pred hcCC-CCCCEEEccCCc
Q 041562 464 LGNM-SSLFHIDFSNNL 479 (653)
Q Consensus 464 ~~~l-~~L~~L~Ls~N~ 479 (653)
+... +.|+++++.+|.
T Consensus 302 ~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 302 LLEPGNELESLWVKDDS 318 (319)
T ss_pred HhhcCCchhhcccCCCC
Confidence 3333 566666666664
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=5.7e-19 Score=181.87 Aligned_cols=138 Identities=26% Similarity=0.324 Sum_probs=56.7
Q ss_pred CCCCCCCEEEcccCCCCCCccccccCCCC---CCEEeccCCcCcc----cccccccCC-CCCcEEEcccCcCCcc----c
Q 041562 193 GSCSRLKTFRAGFNYLTGSLPDDIYTATS---LEQLSLSFNHISG----SIKNGIVNL-TSLRILELYSNSLTGL----I 260 (653)
Q Consensus 193 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~Ls~n~i~~----~~~~~l~~l-~~L~~L~L~~n~l~~~----~ 260 (653)
..+++|+.|++++|.+.+..+..+..+.. |++|++++|.+.+ .+...+..+ ++|++|++++|.+++. +
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 33444444444444444333333322222 5555555554442 112223333 4555555555554421 1
Q ss_pred CccccCCCCCCeEEeecCcCccc----CCccccCCCCCcEEEccCCcCccccCh---hhccCCCCcCEEEccCCccc
Q 041562 261 PRDIGKLTNLESLVLHNNSLSGS----LPSSLKNCINLTLLNLQSNFFEGDISV---FNFSTLLKLRVLDLGSNLFT 330 (653)
Q Consensus 261 p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~i~~---~~~~~l~~L~~L~L~~n~l~ 330 (653)
+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.... ..+..+++|++|++++|.++
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 22233344455555555544421 122233334555555555544321100 12333444555555555444
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=2.5e-18 Score=148.41 Aligned_cols=155 Identities=32% Similarity=0.455 Sum_probs=80.7
Q ss_pred CCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeE
Q 041562 194 SCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESL 273 (653)
Q Consensus 194 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 273 (653)
++.+++.|.+++|.++ .+|..+..+.+|+.|++.+|+|. .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3445555555555555 44555555555555555555555 45555555555555555555554 445555555555555
Q ss_pred EeecCcCcc-cCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcc
Q 041562 274 VLHNNSLSG-SLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQ 352 (653)
Q Consensus 274 ~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 352 (653)
||.+|++.. .+|..|..++.|+.|++++|.+. .+|. ..+.+++|+.|.+..|.+- ..|..++.++.|++|++.+|+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~-dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPP-DVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCCh-hhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 555555432 34444445555555555555554 3332 4445555555555555444 344444444455555555554
Q ss_pred cc
Q 041562 353 LE 354 (653)
Q Consensus 353 l~ 354 (653)
++
T Consensus 185 l~ 186 (264)
T KOG0617|consen 185 LT 186 (264)
T ss_pred ee
Confidence 44
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=4.8e-18 Score=146.61 Aligned_cols=164 Identities=27% Similarity=0.402 Sum_probs=102.2
Q ss_pred ccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCc
Q 041562 216 IYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLT 295 (653)
Q Consensus 216 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 295 (653)
+.++.+.+.|.|++|+++ .+|..++.+.+|+.|++++|+++ .+|..++.+++|+.|++.-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 344555666666666666 45556666666666666666665 44566666666666666666665 5666666666666
Q ss_pred EEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCC
Q 041562 296 LLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNN 375 (653)
Q Consensus 296 ~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 375 (653)
.||+.+|.+....-...|-.+..|+.|+++.|.+. .+|..++++++|+.|.+.+|.+- .+|.+++.+..|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 66666666654332235555666666666666665 56666666666666666666665 45666666666666666666
Q ss_pred CCCCCCcch
Q 041562 376 SLTNITGAI 384 (653)
Q Consensus 376 ~l~~~~~~~ 384 (653)
+++.+|..+
T Consensus 184 rl~vlppel 192 (264)
T KOG0617|consen 184 RLTVLPPEL 192 (264)
T ss_pred eeeecChhh
Confidence 666655443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=4.6e-15 Score=164.25 Aligned_cols=151 Identities=27% Similarity=0.441 Sum_probs=121.3
Q ss_pred CCcCCHHhHHHHHHhhhcCCCCC-CCCCCCCCCc----cccceEeCC---C--CCEEEEEcCCCCcceeccccccCCCCC
Q 041562 31 CQACNQIDQDSLLSLGFNISSPG-LNWSSSTDCC----LWEGIKCDA---N--GRVSHLWLPWKGLTGTISLSIGNLTHL 100 (653)
Q Consensus 31 ~~~~~~~~~~~ll~~k~~~~~~~-~~W~~~~~~c----~w~gv~c~~---~--~~v~~L~L~~~~l~g~~~~~l~~l~~L 100 (653)
...+.++|.+||+.+|+.+..+. .+|. +..|| .|.||.|+. . .+|+.|+|+++++.|.+|+.++.+++|
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~~~~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L 444 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPLRFGWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHL 444 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcccCCCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCC
Confidence 34566789999999999987654 5896 44442 799999952 2 259999999999999999999999999
Q ss_pred CEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEc
Q 041562 101 SHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDL 179 (653)
Q Consensus 101 ~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L 179 (653)
++|+|++|.+.|.+|..++. ++|+.|+|++|+++|.+|..+. .+++|++|+|++|.++|.+|..+.. ...++..+++
T Consensus 445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L~~L~~L~Ls~N~l~g~iP~~l~~-~~~~~~~l~~ 522 (623)
T PLN03150 445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRILNLNGNSLSGRVPAALGG-RLLHRASFNF 522 (623)
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cCCCCCEEECcCCcccccCChHHhh-ccccCceEEe
Confidence 99999999999999988877 8999999999999988888654 5888888888888888888776542 2345566666
Q ss_pred cCCcC
Q 041562 180 SNNRF 184 (653)
Q Consensus 180 s~n~l 184 (653)
.+|..
T Consensus 523 ~~N~~ 527 (623)
T PLN03150 523 TDNAG 527 (623)
T ss_pred cCCcc
Confidence 66643
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.35 E-value=8.8e-13 Score=146.20 Aligned_cols=103 Identities=38% Similarity=0.613 Sum_probs=87.6
Q ss_pred CChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCC--C
Q 041562 539 ASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG--G 616 (653)
Q Consensus 539 ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~--~ 616 (653)
+|..++.++ .|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.+.++++|++|++++|+++|.+|.. .
T Consensus 434 ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 434 IPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 333444444 7899999999999999999999999999999999999999999999999999999999999999975 2
Q ss_pred CCCCcCCCccCCCCCCCCCCCCCCCC
Q 041562 617 QFDTFPSSSFRGNPDLCGAIVQRSCS 642 (653)
Q Consensus 617 ~~~~~~~~~~~gn~~lc~~~~~~~c~ 642 (653)
.+.......+.||+++||.|..+.|.
T Consensus 513 ~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 513 RLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred ccccCceEEecCCccccCCCCCCCCc
Confidence 22334566889999999987557785
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.3e-13 Score=140.57 Aligned_cols=194 Identities=30% Similarity=0.468 Sum_probs=149.6
Q ss_pred CCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEE
Q 041562 317 LKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVL 396 (653)
Q Consensus 317 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L 396 (653)
..-...|++.|++. .+|..+..+..|+.+.|+.|.+. .+|..+..+..|++++|+.|+++.++..+.
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC----------- 141 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLC----------- 141 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhh-----------
Confidence 33456677777777 67777777777888888888876 677778888888888888888776654321
Q ss_pred ECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEcc
Q 041562 397 IIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFS 476 (653)
Q Consensus 397 ~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 476 (653)
.--|+.|.+++|+++ .+|+.++..+.|..||.+.|++. .+|..++.+.+|+.|++.
T Consensus 142 ----------------------~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 142 ----------------------DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred ----------------------cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHh
Confidence 123788888888888 78888888889999999999988 677788889999999999
Q ss_pred CCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecC
Q 041562 477 NNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLS 556 (653)
Q Consensus 477 ~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls 556 (653)
.|++. .+|+.++. + .|..||+|
T Consensus 198 Rn~l~-~lp~El~~-------------------------------------------------------L--pLi~lDfS 219 (722)
T KOG0532|consen 198 RNHLE-DLPEELCS-------------------------------------------------------L--PLIRLDFS 219 (722)
T ss_pred hhhhh-hCCHHHhC-------------------------------------------------------C--ceeeeecc
Confidence 99876 44444433 2 37889999
Q ss_pred CccCccccccccccCCCCCeEeCCCCeeeeecCccc---ccCCCCCeeecCCCc
Q 041562 557 HNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSL---KRLHFLSAFNVAENN 607 (653)
Q Consensus 557 ~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l---~~l~~L~~L~ls~N~ 607 (653)
.|+++ .+|-.|.+|+.|++|-|.+|.+. ..|..+ +..+-.++|+..-++
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 99999 78999999999999999999998 666554 345566788888774
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.19 E-value=1e-12 Score=134.10 Aligned_cols=195 Identities=29% Similarity=0.459 Sum_probs=135.9
Q ss_pred CCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEE
Q 041562 170 SFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL 249 (653)
Q Consensus 170 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 249 (653)
.+.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|+++||+.|+++ .+|..++.|+ |+.|
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 3445566778888877 67777777777777777777777 67777778888888888888777 6676676664 7777
Q ss_pred EcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562 250 ELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF 329 (653)
Q Consensus 250 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 329 (653)
-+++|+++ .+|+.++.+..|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+|. .+..+ .|..||++.|++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~-El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE-ELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH-HHhCC-ceeeeecccCce
Confidence 77777776 56777777777777777777776 56667777777777777777776 4553 34433 467777777777
Q ss_pred cccCCccCcCCCCCCeEEccCccccccCchhhcC---CCCCCEEECCCC
Q 041562 330 TGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA---LKSLSFLSLSNN 375 (653)
Q Consensus 330 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~---l~~L~~L~Ls~n 375 (653)
. .+|..|.+++.|++|.|.+|.+. ..|..++. ..-.++|+..-+
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 7 67777777777777777777776 34444332 222344554444
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=3e-12 Score=123.72 Aligned_cols=89 Identities=25% Similarity=0.365 Sum_probs=43.5
Q ss_pred CCCCCCCEEEcccCCCCCC----ccccccCCCCCCEEeccCCcCccc----ccccccCCCCCcEEEcccCcCCcc----c
Q 041562 193 GSCSRLKTFRAGFNYLTGS----LPDDIYTATSLEQLSLSFNHISGS----IKNGIVNLTSLRILELYSNSLTGL----I 260 (653)
Q Consensus 193 ~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~ 260 (653)
++-+.|+++..+.|.+... +...|...+.|+.+.++.|.|... +...+..+++|++|||.+|.++.. +
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3345566666666655431 222344445666666666655421 123345555666666666555422 1
Q ss_pred CccccCCCCCCeEEeecCcCc
Q 041562 261 PRDIGKLTNLESLVLHNNSLS 281 (653)
Q Consensus 261 p~~l~~l~~L~~L~L~~n~l~ 281 (653)
...+..+++|+.|++++|.+.
T Consensus 234 akaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHhcccchheeecccccccc
Confidence 122334445555555555444
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=6.9e-11 Score=125.39 Aligned_cols=173 Identities=35% Similarity=0.480 Sum_probs=68.2
Q ss_pred CCCEEEccCCcCccCCCccCCCCC-CCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEc
Q 041562 173 SIRHLDLSNNRFTGPVPLGLGSCS-RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILEL 251 (653)
Q Consensus 173 ~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 251 (653)
.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|++. .+|...+..+.|+.|++
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 3444444444443 2333333332 4444444444444 23333444444444444444444 23333334444444444
Q ss_pred ccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccc
Q 041562 252 YSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG 331 (653)
Q Consensus 252 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~ 331 (653)
++|++. .+|..+.....|+++.+++|.+. ..+..+.++.++..+.+.+|++.. ++ ..++.++.++.|++++|.++.
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~-~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LP-ESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-cc-chhccccccceeccccccccc
Confidence 444444 22333233333444444444322 223334444444444444444331 11 123333444444444444432
Q ss_pred cCCccCcCCCCCCeEEccCcccc
Q 041562 332 SLPITLNSCKSLTAVNLARNQLE 354 (653)
Q Consensus 332 ~~~~~l~~l~~L~~L~L~~n~l~ 354 (653)
++. ++...+++.|++++|.+.
T Consensus 270 -i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 270 -ISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred -ccc-ccccCccCEEeccCcccc
Confidence 111 333444444444444443
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.3e-11 Score=122.49 Aligned_cols=138 Identities=25% Similarity=0.223 Sum_probs=77.0
Q ss_pred cCCCCcCEEEccCCcccccCC-ccCcCCCCCCeEEccCccccccC--chhhcCCCCCCEEECCCCCCCCCCcchhhccCC
Q 041562 314 STLLKLRVLDLGSNLFTGSLP-ITLNSCKSLTAVNLARNQLEGQI--SPGIVALKSLSFLSLSNNSLTNITGAIRILMGC 390 (653)
Q Consensus 314 ~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 390 (653)
+++.+|+.+.|.++.+..... .....|++++.|+|+.|-+.... ......+++|+.|+++.|.+....+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-------- 189 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-------- 189 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc--------
Confidence 455667777777666542111 23445666666666666554221 1223345566666666665543221
Q ss_pred CCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCccc-chhhhcCCccCCeeeCcCCcCccCCchhhcCCCC
Q 041562 391 KNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQ-VPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSS 469 (653)
Q Consensus 391 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 469 (653)
.... ..+++|+.|.|+.|.++.. +...+..+|+|+.|+|.+|.....-......+..
T Consensus 190 ------------------s~~~----~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 190 ------------------SNTT----LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred ------------------ccch----hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 1111 1356777888888877632 3334456778888888887533232333445667
Q ss_pred CCEEEccCCcCc
Q 041562 470 LFHIDFSNNLIS 481 (653)
Q Consensus 470 L~~L~Ls~N~l~ 481 (653)
|+.|||++|++.
T Consensus 248 L~~LdLs~N~li 259 (505)
T KOG3207|consen 248 LQELDLSNNNLI 259 (505)
T ss_pred HhhccccCCccc
Confidence 788888888765
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.5e-11 Score=122.03 Aligned_cols=160 Identities=22% Similarity=0.216 Sum_probs=94.0
Q ss_pred CCcCEEEccCCCCCCCCc-hHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCc-cCCCCCCC
Q 041562 121 NYIKIIDLSSNHFQGKIP-STIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPL-GLGSCSRL 198 (653)
Q Consensus 121 ~~L~~L~Ls~n~l~~~ip-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L 198 (653)
++|+.+.|.++.+. ..+ .+....+++++.|||+.|-|....+..-....+++|+.|+++.|++...... .-..+++|
T Consensus 121 kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 67888888888876 333 2456678999999999998887666555556788999999999887632221 11245666
Q ss_pred CEEEcccCCCCCC-ccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCccc-CccccCCCCCCeEEee
Q 041562 199 KTFRAGFNYLTGS-LPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLI-PRDIGKLTNLESLVLH 276 (653)
Q Consensus 199 ~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~ 276 (653)
+.|.++.|.++-. +-..+..+++|+.|+|..|............+..|+.|||++|.+.... -...+.++.|+.|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 6666666665521 1122334566666666666422222233334455556666655554221 0223445555555555
Q ss_pred cCcCc
Q 041562 277 NNSLS 281 (653)
Q Consensus 277 ~n~l~ 281 (653)
.+.+.
T Consensus 280 ~tgi~ 284 (505)
T KOG3207|consen 280 STGIA 284 (505)
T ss_pred ccCcc
Confidence 55544
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.12 E-value=7.2e-11 Score=125.23 Aligned_cols=193 Identities=31% Similarity=0.408 Sum_probs=100.7
Q ss_pred EEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCC-CCCEEeccCCcCcccccccccCCCCCcEEEcccC
Q 041562 176 HLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTAT-SLEQLSLSFNHISGSIKNGIVNLTSLRILELYSN 254 (653)
Q Consensus 176 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 254 (653)
.++++.+.+.. ....+..++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 35555555431 1223334466666666666666 4555555553 6666666666665 44455666666666666666
Q ss_pred cCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCC
Q 041562 255 SLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLP 334 (653)
Q Consensus 255 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 334 (653)
++.. +|...+..++|+.|++++|++. .+|........|++|.+++|.....+. .+..+.++..+.+.+|++. ..+
T Consensus 174 ~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecch--hhhhcccccccccCCceee-ecc
Confidence 6653 3333335566666666666665 444444444446666666663221221 3445555555555555554 224
Q ss_pred ccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562 335 ITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT 378 (653)
Q Consensus 335 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 378 (653)
..+..+++++.|++++|.++... . ++.+.+++.|++++|.+.
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~-~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSIS-S-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred chhccccccceeccccccccccc-c-ccccCccCEEeccCcccc
Confidence 44445555555555555554222 1 444555555555555444
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=5.7e-12 Score=121.80 Aligned_cols=232 Identities=22% Similarity=0.211 Sum_probs=163.8
Q ss_pred CCCEEEEEcCCCCcce----eccccccCCCCCCEEECCCC---CCCCCCCcccc--------CCCcCEEEccCCCCCCCC
Q 041562 73 NGRVSHLWLPWKGLTG----TISLSIGNLTHLSHLNLSHN---RLSGEFPSSLS--------SNYIKIIDLSSNHFQGKI 137 (653)
Q Consensus 73 ~~~v~~L~L~~~~l~g----~~~~~l~~l~~L~~L~Ls~n---~~~~~~p~~~~--------~~~L~~L~Ls~n~l~~~i 137 (653)
...++.|+|++|.+.- .+.+.+.+.++|+..++|.- +....+|+.+. .++|++||||+|-|.-..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 3479999999998864 45677888899999999863 22334555432 269999999999987555
Q ss_pred ch---HHHhcCCCCcEEEccCCcCcccCChhhh-----------hcCCCCCCEEEccCCcCccC----CCccCCCCCCCC
Q 041562 138 PS---TIFRLTQNLITFNVSNNSFTGLISWSAW-----------VDSFCSIRHLDLSNNRFTGP----VPLGLGSCSRLK 199 (653)
Q Consensus 138 p~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----------~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~ 199 (653)
+. .+.+.+..|++|+|.+|.+.-.-...++ ...-+.||++....|++... +...|...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 44 3456789999999999977532211111 12457899999999998742 234567789999
Q ss_pred EEEcccCCCCCC----ccccccCCCCCCEEeccCCcCcc----cccccccCCCCCcEEEcccCcCCcccCcccc-----C
Q 041562 200 TFRAGFNYLTGS----LPDDIYTATSLEQLSLSFNHISG----SIKNGIVNLTSLRILELYSNSLTGLIPRDIG-----K 266 (653)
Q Consensus 200 ~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~i~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~ 266 (653)
.+.+..|.|... +...+..+++|+.|||.+|.++. .+...+..+++|+.|++++|.+.......|. .
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 999999988632 33457789999999999998874 3446677889999999999998865433332 3
Q ss_pred CCCCCeEEeecCcCccc----CCccccCCCCCcEEEccCCcC
Q 041562 267 LTNLESLVLHNNSLSGS----LPSSLKNCINLTLLNLQSNFF 304 (653)
Q Consensus 267 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l 304 (653)
.++|++|.+.+|.++.. +...+...+.|+.|+|++|.+
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 56777888777777521 112233456666666666665
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=3.5e-11 Score=113.65 Aligned_cols=110 Identities=27% Similarity=0.342 Sum_probs=74.6
Q ss_pred ccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCC
Q 041562 264 IGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSL 343 (653)
Q Consensus 264 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 343 (653)
+.....|+++||++|.++ .+.++..-.|.++.|++++|.+. .+. .+..+++|+.|||++|.++ .+..+-..+.++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh--hhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 334556777777777776 55566666777777777777776 444 4667777777777777776 344444556677
Q ss_pred CeEEccCccccccCchhhcCCCCCCEEECCCCCCCCC
Q 041562 344 TAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNI 380 (653)
Q Consensus 344 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 380 (653)
++|.|++|.+.. -..+..+-+|..||+++|++..+
T Consensus 355 KtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 355 KTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred eeeehhhhhHhh--hhhhHhhhhheeccccccchhhH
Confidence 777777777752 24566667777777777777654
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.01 E-value=9e-11 Score=110.88 Aligned_cols=131 Identities=26% Similarity=0.293 Sum_probs=66.3
Q ss_pred CCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEE
Q 041562 244 TSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLD 323 (653)
Q Consensus 244 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~ 323 (653)
+.|+++||++|.++ .+.++..-.|.++.|++++|.+... ..++.+++|+.||+++|.++ .+.. .-..+-+++.|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~G-wh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVG-WHLKLGNIKTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhh-hHhhhcCEeeee
Confidence 44555555555555 2334444455555555555555522 22555555555555555554 2221 223445555555
Q ss_pred ccCCcccccCCccCcCCCCCCeEEccCcccccc-CchhhcCCCCCCEEECCCCCCCCCC
Q 041562 324 LGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQ-ISPGIVALKSLSFLSLSNNSLTNIT 381 (653)
Q Consensus 324 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~ 381 (653)
|++|.+.. -..++.+-+|..||+++|+|... -...++++|.|+.+.|.+|.+..++
T Consensus 359 La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 359 LAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 65555531 12344455555566666655421 1134556666666666666665443
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=3.3e-10 Score=103.10 Aligned_cols=83 Identities=39% Similarity=0.526 Sum_probs=17.7
Q ss_pred CCCcEEEccCCcCccccChhhcc-CCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhh-cCCCCCCE
Q 041562 292 INLTLLNLQSNFFEGDISVFNFS-TLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGI-VALKSLSF 369 (653)
Q Consensus 292 ~~L~~L~L~~n~l~~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~ 369 (653)
.++++|+|.+|.++ .|. .++ .+.+|+.|++++|.++. + ..+..++.|++|++++|+++. +.+.+ ..+++|++
T Consensus 19 ~~~~~L~L~~n~I~-~Ie--~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TIE--NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred cccccccccccccc-ccc--chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence 34445555555444 232 222 24455555555555542 1 134445555555555555553 22222 24556666
Q ss_pred EECCCCCCCCC
Q 041562 370 LSLSNNSLTNI 380 (653)
Q Consensus 370 L~Ls~n~l~~~ 380 (653)
|++++|++..+
T Consensus 93 L~L~~N~I~~l 103 (175)
T PF14580_consen 93 LYLSNNKISDL 103 (175)
T ss_dssp EE-TTS---SC
T ss_pred EECcCCcCCCh
Confidence 66666665544
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=2.8e-10 Score=103.59 Aligned_cols=60 Identities=37% Similarity=0.490 Sum_probs=13.1
Q ss_pred CCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccc-cCCCCCcEEEccCCcCc
Q 041562 243 LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL-KNCINLTLLNLQSNFFE 305 (653)
Q Consensus 243 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~ 305 (653)
+.+|+.|++++|.++.. +.+..+++|++|++++|+++. +.+.+ ..+++|++|++++|++.
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCC
Confidence 34444444444444432 233444444444444444442 22222 23444444444444443
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=9.6e-10 Score=124.72 Aligned_cols=126 Identities=23% Similarity=0.318 Sum_probs=58.2
Q ss_pred CCCCEEECCCCCCCCCCCccccCCCcCEEEccCCC--CCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCC
Q 041562 98 THLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNH--FQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIR 175 (653)
Q Consensus 98 ~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~--l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~ 175 (653)
...|...+-+|.+. .++.....++|+.|-+..|. +. .++..+|..++.|++|||++|.=-+..|..++ .+-+||
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~--~Li~Lr 598 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG--ELVHLR 598 (889)
T ss_pred hheeEEEEeccchh-hccCCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHh--hhhhhh
Confidence 44555555555543 23333333455555555554 33 45555555555555555555443333443332 344444
Q ss_pred EEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEecc
Q 041562 176 HLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLS 228 (653)
Q Consensus 176 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 228 (653)
+|++++..+. .+|..+++++.|.+|++..+.....+|.....+++|++|.+.
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 4444444444 444444444444444444443333333333334444444443
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=9.5e-10 Score=124.77 Aligned_cols=107 Identities=26% Similarity=0.192 Sum_probs=55.6
Q ss_pred CCCCCEEEccCCc--CccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcE
Q 041562 171 FCSIRHLDLSNNR--FTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRI 248 (653)
Q Consensus 171 l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 248 (653)
++.|++|-+..|. +.......|..++.|++||+++|.--+.+|..++++-+|++|+++++.+. .+|..+.+++.|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3345555555553 22222223445555555555555444455555555555555555555555 55555555555555
Q ss_pred EEcccCcCCcccCccccCCCCCCeEEeecC
Q 041562 249 LELYSNSLTGLIPRDIGKLTNLESLVLHNN 278 (653)
Q Consensus 249 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 278 (653)
|++..+.....+|.....+.+|++|.+...
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eccccccccccccchhhhcccccEEEeecc
Confidence 555555444344444444555555555443
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.86 E-value=2.8e-10 Score=120.86 Aligned_cols=175 Identities=27% Similarity=0.346 Sum_probs=78.6
Q ss_pred CCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCC
Q 041562 192 LGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLE 271 (653)
Q Consensus 192 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 271 (653)
+..+++|+.+++.+|.+.. +...+..+++|++|++++|.|+.. ..+..++.|+.|++++|.+... ..+..++.|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhh
Confidence 3344444444444444442 221134445555555555555422 2234444455555555555433 2344455555
Q ss_pred eEEeecCcCcccCC-ccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCC--CCCeEEc
Q 041562 272 SLVLHNNSLSGSLP-SSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCK--SLTAVNL 348 (653)
Q Consensus 272 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L 348 (653)
.+++++|++...-+ . +..+.+++.+++.+|.+. .+. .+..+..+..+++..|.++..-+ +.... .|+.+++
T Consensus 166 ~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~--~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l 239 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR-EIE--GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYL 239 (414)
T ss_pred cccCCcchhhhhhhhh-hhhccchHHHhccCCchh-ccc--chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhc
Confidence 55555555553222 1 344555555555555554 222 22233333334555555542211 11112 2555555
Q ss_pred cCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562 349 ARNQLEGQISPGIVALKSLSFLSLSNNSLT 378 (653)
Q Consensus 349 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 378 (653)
++|++.. .+..+..+..+..+++.+|++.
T Consensus 240 ~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 240 SGNRISR-SPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccCcccc-ccccccccccccccchhhcccc
Confidence 5555542 2233444555555555555554
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=1.8e-09 Score=80.71 Aligned_cols=60 Identities=40% Similarity=0.551 Sum_probs=56.7
Q ss_pred ccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcc
Q 041562 549 LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNL 608 (653)
Q Consensus 549 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 608 (653)
+|++|++++|+++...++.|..+++|++||+++|+++...|..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 799999999999977778999999999999999999988888999999999999999986
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=2.7e-10 Score=121.06 Aligned_cols=246 Identities=30% Similarity=0.317 Sum_probs=133.9
Q ss_pred CCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeE
Q 041562 194 SCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESL 273 (653)
Q Consensus 194 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 273 (653)
.+..++.+.+..|.+.. +-..+..+++|+.|++.+|.|.. +...+..+++|++|++++|.++.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 34445555555555552 33345667777777777777763 333366677777777777777755 345666667777
Q ss_pred EeecCcCcccCCccccCCCCCcEEEccCCcCccccCh-hhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcc
Q 041562 274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISV-FNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQ 352 (653)
Q Consensus 274 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 352 (653)
++++|.++.. ..+..++.|+.+++++|.+. .+.. . ...+.+++.+++.+|.+.. ...+..+..+..+++..|.
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccccc
Confidence 7777777632 34555677777777777766 3331 1 3556666666676666642 2223333444444566665
Q ss_pred ccccCchhhcCCCC--CCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCC
Q 041562 353 LEGQISPGIVALKS--LSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAEC 430 (653)
Q Consensus 353 l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n 430 (653)
++..-+ +..+.. |+.+++++|.+..++ ..+. .+..+..|++.+|
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~---~~~~-----------------------------~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRISRSP---EGLE-----------------------------NLKNLPVLDLSSN 265 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCcccccc---cccc-----------------------------ccccccccchhhc
Confidence 542211 112222 556666666555332 1122 3455555666666
Q ss_pred cCcccchhhhcCCccCCeeeCcCCcCccC---Cch-hhcCCCCCCEEEccCCcCcccCC
Q 041562 431 KLKGQVPSWIGKLKKLQVLDLSFNQLTGS---VPR-FLGNMSSLFHIDFSNNLISGEFP 485 (653)
Q Consensus 431 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~---~~~-~~~~l~~L~~L~Ls~N~l~~~~p 485 (653)
++... ..+...+.+..+....|++... ... .....+.++.+.+..|.+....+
T Consensus 266 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 266 RISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 55422 1233344555555555554421 111 13455666667777776654433
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1.1e-08 Score=76.39 Aligned_cols=61 Identities=38% Similarity=0.484 Sum_probs=54.2
Q ss_pred CCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcC
Q 041562 420 KNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLI 480 (653)
Q Consensus 420 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 480 (653)
++|++|++++|+++...+..|..+++|++|++++|++....+..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999999966667889999999999999999988888899999999999999975
No 43
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.67 E-value=2.4e-08 Score=68.13 Aligned_cols=36 Identities=33% Similarity=0.894 Sum_probs=27.1
Q ss_pred HHhHHHHHHhhhcCCC-CC---CCCCCC--CCCccccceEeC
Q 041562 36 QIDQDSLLSLGFNISS-PG---LNWSSS--TDCCLWEGIKCD 71 (653)
Q Consensus 36 ~~~~~~ll~~k~~~~~-~~---~~W~~~--~~~c~w~gv~c~ 71 (653)
++|++||++||+++.. +. .+|+.. .+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5799999999999985 42 799875 799999999996
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2e-09 Score=101.98 Aligned_cols=202 Identities=18% Similarity=0.144 Sum_probs=117.2
Q ss_pred CEEEEEcCCCCccee-ccccccCC-CCCCEEECCCCCCCCCCCc-cccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcE
Q 041562 75 RVSHLWLPWKGLTGT-ISLSIGNL-THLSHLNLSHNRLSGEFPS-SLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLIT 150 (653)
Q Consensus 75 ~v~~L~L~~~~l~g~-~~~~l~~l-~~L~~L~Ls~n~~~~~~p~-~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~ 150 (653)
.|..+.+...-.... +.+.+.-+ +.|++||||...++..--. .+.. .+|+.|.|.++++.+.|-..+.. -.+|+.
T Consensus 160 gV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~ 238 (419)
T KOG2120|consen 160 GVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVR 238 (419)
T ss_pred CeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-ccccee
Confidence 366666654333222 22222222 2477777777766532111 1122 67777777777777666665554 567777
Q ss_pred EEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCc-cCCC-CCCCCEEEcccCCCC---CCccccccCCCCCCEE
Q 041562 151 FNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPL-GLGS-CSRLKTFRAGFNYLT---GSLPDDIYTATSLEQL 225 (653)
Q Consensus 151 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~-l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L 225 (653)
|+++.+.=-..........+++.|..|+++.|.+....-. .+.. -++|+.|+++++.-. ..+..-...+++|.+|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 7777664322233334445677788888887776542211 1111 256777777765321 1222234567888888
Q ss_pred eccCCc-CcccccccccCCCCCcEEEcccCcCCcccCcc---ccCCCCCCeEEeecCc
Q 041562 226 SLSFNH-ISGSIKNGIVNLTSLRILELYSNSLTGLIPRD---IGKLTNLESLVLHNNS 279 (653)
Q Consensus 226 ~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~ 279 (653)
||++|. ++......|.+++.|++|.++.|.. .+|.. +...+.|.+|+..++-
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 888774 3333345567888888888888753 44543 4567888888887753
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.49 E-value=1.5e-09 Score=114.11 Aligned_cols=128 Identities=27% Similarity=0.299 Sum_probs=93.0
Q ss_pred CCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccc
Q 041562 420 KNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQD 499 (653)
Q Consensus 420 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~ 499 (653)
-.|...+.+.|.+. .....+.-++.|+.|+|++|+++.. +.+..++.|+.|||++|.+. .+|. +. .
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~-------l~---~ 229 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQ-------LS---M 229 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccc-------cc---h
Confidence 45777788888887 5667788888999999999999854 36888999999999999886 2321 00 0
Q ss_pred cccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeC
Q 041562 500 KNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDL 579 (653)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdL 579 (653)
..+ .|+.|++++|.++.. ..+.++++|+-||+
T Consensus 230 --------------------------------------------~gc--~L~~L~lrnN~l~tL--~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 230 --------------------------------------------VGC--KLQLLNLRNNALTTL--RGIENLKSLYGLDL 261 (1096)
T ss_pred --------------------------------------------hhh--hheeeeecccHHHhh--hhHHhhhhhhccch
Confidence 000 577888888888733 45778888888888
Q ss_pred CCCeeeeecC-cccccCCCCCeeecCCCccc
Q 041562 580 SKNHLSGEIP-VSLKRLHFLSAFNVAENNLR 609 (653)
Q Consensus 580 s~N~l~~~ip-~~l~~l~~L~~L~ls~N~l~ 609 (653)
|+|-|++--- .-+..|.+|+.|+|.+|++.
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8888875211 22456777888888888874
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=3.7e-09 Score=111.37 Aligned_cols=125 Identities=27% Similarity=0.319 Sum_probs=57.3
Q ss_pred CCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCcc-ccCCCCCCeEEee
Q 041562 198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRD-IGKLTNLESLVLH 276 (653)
Q Consensus 198 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~ 276 (653)
|.+.+.+.|.+. .+-.++.-++.|+.|+|+.|+++.. +.+..+++|++|||++|.+.. +|.. ...+ +|..|.++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-hheeeeec
Confidence 333444444444 2333344445555555555555422 245555555555555555542 2211 1112 25555555
Q ss_pred cCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562 277 NNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF 329 (653)
Q Consensus 277 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 329 (653)
+|.++.. ..+.++.+|+.||+++|-+.+.-....++.+..|+.|+|.+|.+
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5555422 23455555555555555554322222333444455555555544
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.36 E-value=3.6e-08 Score=92.35 Aligned_cols=187 Identities=20% Similarity=0.222 Sum_probs=91.6
Q ss_pred ccCCCCCCEEECCCCCCCCCCCcccc----C-CCcCEEEccCCCC---CCCCchHH------HhcCCCCcEEEccCCcCc
Q 041562 94 IGNLTHLSHLNLSHNRLSGEFPSSLS----S-NYIKIIDLSSNHF---QGKIPSTI------FRLTQNLITFNVSNNSFT 159 (653)
Q Consensus 94 l~~l~~L~~L~Ls~n~~~~~~p~~~~----~-~~L~~L~Ls~n~l---~~~ip~~~------~~~l~~L~~L~Ls~n~l~ 159 (653)
+..+..++.+|||+|.|.......+. + .+|++.+++.-.. ...+|..+ .-.|++|+..+||.|.|.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34456666666666666544333332 2 5666666665321 12223221 224677777777777766
Q ss_pred ccCChhh--hhcCCCCCCEEEccCCcCccCCCc-------------cCCCCCCCCEEEcccCCCCCCccc-----cccCC
Q 041562 160 GLISWSA--WVDSFCSIRHLDLSNNRFTGPVPL-------------GLGSCSRLKTFRAGFNYLTGSLPD-----DIYTA 219 (653)
Q Consensus 160 ~~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~~p~-----~l~~l 219 (653)
...|..+ ...+-+.|.+|.+++|.+.-..-. ...+-+.|++.....|++.. .|. .+..-
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh 184 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESH 184 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhh
Confidence 5554433 233556677777777765421111 12344566666666666542 111 11112
Q ss_pred CCCCEEeccCCcCcccc-----cccccCCCCCcEEEcccCcCCccc----CccccCCCCCCeEEeecCcCc
Q 041562 220 TSLEQLSLSFNHISGSI-----KNGIVNLTSLRILELYSNSLTGLI----PRDIGKLTNLESLVLHNNSLS 281 (653)
Q Consensus 220 ~~L~~L~Ls~n~i~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~ 281 (653)
..|+++.+..|.|.-.. -..+..+++|+.||+.+|.++-.. ...+...+.|+.|.+.+|-++
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 35666666666554110 012234556666666666554221 112233444555555555444
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.33 E-value=3.5e-08 Score=82.95 Aligned_cols=77 Identities=23% Similarity=0.378 Sum_probs=39.7
Q ss_pred cCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCCCCCCcCCCccCCC
Q 041562 550 LHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGN 629 (653)
Q Consensus 550 L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn 629 (653)
++.|+|++|+|+ .+|..+..++.|+.|+++.|.+. ..|..+..+.+|..|+.-.|.+. +||..-...+.++..-.||
T Consensus 79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgn 155 (177)
T KOG4579|consen 79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGN 155 (177)
T ss_pred hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcC
Confidence 445555555555 44555555556666666666555 44444555555555555555554 5554433333333333344
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.2e-08 Score=96.86 Aligned_cols=177 Identities=23% Similarity=0.223 Sum_probs=90.4
Q ss_pred CCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCc-Ccc-cccccccCCCCCcEE
Q 041562 173 SIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH-ISG-SIKNGIVNLTSLRIL 249 (653)
Q Consensus 173 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-i~~-~~~~~l~~l~~L~~L 249 (653)
.|++||||...++. .....+..|.+|+.|.+.++++.+.+...+++-.+|+.|+++.+. ++. ...-.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 35555555555442 122234455566666666666665555556666666666666543 221 111224556666666
Q ss_pred EcccCcCCcccCccc-cC-CCCCCeEEeecCcCc---ccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEc
Q 041562 250 ELYSNSLTGLIPRDI-GK-LTNLESLVLHNNSLS---GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDL 324 (653)
Q Consensus 250 ~L~~n~l~~~~p~~l-~~-l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L 324 (653)
++++|.+....-..+ .. -++|+.|+|+++.-. ..+..-...+++|.+|||++|..-..--...|-.++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 666665543321111 11 145666666665321 1111123456777777777664321211124556677777777
Q ss_pred cCCcccccCCc---cCcCCCCCCeEEccCc
Q 041562 325 GSNLFTGSLPI---TLNSCKSLTAVNLARN 351 (653)
Q Consensus 325 ~~n~l~~~~~~---~l~~l~~L~~L~L~~n 351 (653)
+.|.. .+|. .+...+.|.+|+..++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 77653 2333 2455667777777654
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=1.7e-07 Score=89.09 Aligned_cols=86 Identities=22% Similarity=0.267 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCCcce--eccccccCCCCCCEEECCCCCCCCCCCcc-ccCCCcCEEEccCCCCCCCCchHHHhcCCCCcE
Q 041562 74 GRVSHLWLPWKGLTG--TISLSIGNLTHLSHLNLSHNRLSGEFPSS-LSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLIT 150 (653)
Q Consensus 74 ~~v~~L~L~~~~l~g--~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~ 150 (653)
.+|..+||.+|.++. .+..-+.++|+|++|+|+.|.+...|-.. ....+|++|-|.+..+.-.-.......+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 378899999998874 45566788999999999999987655433 333889999998888765445556667788888
Q ss_pred EEccCCcCc
Q 041562 151 FNVSNNSFT 159 (653)
Q Consensus 151 L~Ls~n~l~ 159 (653)
|.++.|++.
T Consensus 151 lHmS~N~~r 159 (418)
T KOG2982|consen 151 LHMSDNSLR 159 (418)
T ss_pred hhhccchhh
Confidence 888887543
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=4.9e-07 Score=86.04 Aligned_cols=179 Identities=17% Similarity=0.178 Sum_probs=78.8
Q ss_pred CCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCC-ccccccCCCCCC
Q 041562 145 TQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGS-LPDDIYTATSLE 223 (653)
Q Consensus 145 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~ 223 (653)
++.++.+||.+|.++..-.......++|.|++|+++.|.+...+...-....+|++|-|.+..+.-. .-..+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3444455555554444322222233455555555555555432222112344555555555444321 112234455555
Q ss_pred EEeccCCcCcccc--ccc----------ccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccC-CccccC
Q 041562 224 QLSLSFNHISGSI--KNG----------IVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSL-PSSLKN 290 (653)
Q Consensus 224 ~L~Ls~n~i~~~~--~~~----------l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~ 290 (653)
+|.++.|.+.... .+. +...+.+..+..+-|++... ++++..+.+..|.+...- ......
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-------Fpnv~sv~v~e~PlK~~s~ek~se~ 222 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-------FPNVNSVFVCEGPLKTESSEKGSEP 222 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-------cccchheeeecCcccchhhcccCCC
Confidence 5555555322100 000 11111222222222222222 345666666666554221 123444
Q ss_pred CCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562 291 CINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330 (653)
Q Consensus 291 l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 330 (653)
++.+..|+|+.|++..--....+..++.|..|.++++.+.
T Consensus 223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 5555566666666654333345566666666666666554
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=1.6e-07 Score=79.13 Aligned_cols=138 Identities=25% Similarity=0.333 Sum_probs=103.8
Q ss_pred CCcCEEEccCCcCcccchhh---hcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCc
Q 041562 420 KNLQVLGLAECKLKGQVPSW---IGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTP 496 (653)
Q Consensus 420 ~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 496 (653)
..+..++|+.|++- .+++. +.....|+..+|++|.+....+..-...+..+.|++++|.++ .+|++++.
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa------ 98 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAA------ 98 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhh------
Confidence 34677889999876 44443 445567777899999998554444456678999999999987 45554444
Q ss_pred ccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCe
Q 041562 497 EQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLER 576 (653)
Q Consensus 497 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 576 (653)
++ .|+.|+++.|.+. ..|..+..+.++-.
T Consensus 99 -------------------------------------------------m~-aLr~lNl~~N~l~-~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 99 -------------------------------------------------MP-ALRSLNLRFNPLN-AEPRVIAPLIKLDM 127 (177)
T ss_pred -------------------------------------------------hH-HhhhcccccCccc-cchHHHHHHHhHHH
Confidence 44 7889999999999 77888888999999
Q ss_pred EeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCCC
Q 041562 577 MDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQ 617 (653)
Q Consensus 577 LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~ 617 (653)
||.-+|.+. +||..+-.-+.....++.++++.+.-|.+.|
T Consensus 128 Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 128 LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred hcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 999999998 7887654444445557788889888777654
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=6.8e-06 Score=91.42 Aligned_cols=180 Identities=16% Similarity=0.157 Sum_probs=107.3
Q ss_pred CEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCC-------------cccc---CCCcCEEEccCCCC-CCCC
Q 041562 75 RVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFP-------------SSLS---SNYIKIIDLSSNHF-QGKI 137 (653)
Q Consensus 75 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p-------------~~~~---~~~L~~L~Ls~n~l-~~~i 137 (653)
.++.+++.+..+....-..+.... |+.|.|.+-......- ..+. ..+|++||+++... ....
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W 139 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW 139 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence 467777776655544444444444 7777776543221110 0011 17899999988643 3455
Q ss_pred chHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCC-Cccccc
Q 041562 138 PSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG-SLPDDI 216 (653)
Q Consensus 138 p~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l 216 (653)
|..+...+|.|+.|.+++-.+...--...+ .++++|+.||+|+++++.. ..++++++|++|.+.+=.+.. ..-..+
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc-~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLC-ASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHh-hccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 666777889999999888766544322222 3788888888888888743 567788888888776655542 222346
Q ss_pred cCCCCCCEEeccCCcCcccc--c----ccccCCCCCcEEEcccCcCCc
Q 041562 217 YTATSLEQLSLSFNHISGSI--K----NGIVNLTSLRILELYSNSLTG 258 (653)
Q Consensus 217 ~~l~~L~~L~Ls~n~i~~~~--~----~~l~~l~~L~~L~L~~n~l~~ 258 (653)
.++++|+.||+|........ . +.-..+++|+.||.+++.+.+
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 67777777777765443211 0 111234555555555555443
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.88 E-value=5.7e-06 Score=77.96 Aligned_cols=240 Identities=18% Similarity=0.157 Sum_probs=125.0
Q ss_pred cccCCCCCcEEEcccCcCCcccC----ccccCCCCCCeEEeecCcC---cccCC-------ccccCCCCCcEEEccCCcC
Q 041562 239 GIVNLTSLRILELYSNSLTGLIP----RDIGKLTNLESLVLHNNSL---SGSLP-------SSLKNCINLTLLNLQSNFF 304 (653)
Q Consensus 239 ~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l---~~~~p-------~~l~~l~~L~~L~L~~n~l 304 (653)
.+..+..++.++||+|.+...-. ..+++-.+|+..+++.-.. ...++ ..+.+||.|+.++|++|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34557788899999998875433 3344556777777766322 11222 2356788888888888877
Q ss_pred ccccCh---hhccCCCCcCEEEccCCcccccCCc-------------cCcCCCCCCeEEccCccccccCc----hhhcCC
Q 041562 305 EGDISV---FNFSTLLKLRVLDLGSNLFTGSLPI-------------TLNSCKSLTAVNLARNQLEGQIS----PGIVAL 364 (653)
Q Consensus 305 ~~~i~~---~~~~~l~~L~~L~L~~n~l~~~~~~-------------~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l 364 (653)
....+. ..++.-..|++|.+++|.+...-.. ....-|.|+++....|++..... ..+..-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 654442 1345667788888888766421111 12234567777777776642211 112223
Q ss_pred CCCCEEECCCCCCCCCCcch-----hhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhh
Q 041562 365 KSLSFLSLSNNSLTNITGAI-----RILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSW 439 (653)
Q Consensus 365 ~~L~~L~Ls~n~l~~~~~~~-----~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~ 439 (653)
..|+.+.+..|.|. |..+ ..+..+++|+.|++..|.++..-..... .....++.|++|.+.+|-++..-...
T Consensus 185 ~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La-~al~~W~~lrEL~lnDClls~~G~~~ 261 (388)
T COG5238 185 ENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA-DALCEWNLLRELRLNDCLLSNEGVKS 261 (388)
T ss_pred cCceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH-HHhcccchhhhccccchhhccccHHH
Confidence 46666666666665 2211 2234456666666666655432111100 11123344566666666554332221
Q ss_pred h----c--CCccCCeeeCcCCcCccCCchh------h-cCCCCCCEEEccCCcCc
Q 041562 440 I----G--KLKKLQVLDLSFNQLTGSVPRF------L-GNMSSLFHIDFSNNLIS 481 (653)
Q Consensus 440 l----~--~l~~L~~L~Ls~n~l~~~~~~~------~-~~l~~L~~L~Ls~N~l~ 481 (653)
+ . ..|+|..|...+|.+.+.+-.. . .++|-|..|.+.+|+|.
T Consensus 262 v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 262 VLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 1 1 2455556666665544322111 1 23445555555555553
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=9.2e-06 Score=55.48 Aligned_cols=36 Identities=44% Similarity=0.711 Sum_probs=26.9
Q ss_pred ccCeeecCCccCccccccccccCCCCCeEeCCCCeee
Q 041562 549 LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLS 585 (653)
Q Consensus 549 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 585 (653)
.|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5788888888888 46666788888888888888887
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1e-05 Score=55.22 Aligned_cols=37 Identities=35% Similarity=0.643 Sum_probs=32.5
Q ss_pred CCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCccc
Q 041562 572 TNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR 609 (653)
Q Consensus 572 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 609 (653)
++|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 57999999999999 67777999999999999999997
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=9.7e-05 Score=75.86 Aligned_cols=57 Identities=14% Similarity=0.267 Sum_probs=36.1
Q ss_pred ccCeeecCCccCccccccccccCCCCCeEeCCCCee------eeecCcccccCCCCCeeecCCCccc
Q 041562 549 LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHL------SGEIPVSLKRLHFLSAFNVAENNLR 609 (653)
Q Consensus 549 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l------~~~ip~~l~~l~~L~~L~ls~N~l~ 609 (653)
+|++|++++|... ..|..+. .+|+.|+++.|.. .+.+|+.+ .+.....+.++.+.++
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~ 219 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVFK 219 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEecccccccccCccccccccc-EechhhhcccCHHHhh
Confidence 7999999998876 4555444 5899999988732 23556555 4444444445444443
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.72 E-value=9e-07 Score=88.23 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=20.2
Q ss_pred CCCCCeEEccCcccc-ccCchhhcCCCCCCEEECCCCC
Q 041562 340 CKSLTAVNLARNQLE-GQISPGIVALKSLSFLSLSNNS 376 (653)
Q Consensus 340 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~ 376 (653)
+..|..+.|+++... +.....+..+++|+.+++-+++
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 445666666666543 2223344556666666666654
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00012 Score=75.09 Aligned_cols=54 Identities=19% Similarity=0.202 Sum_probs=34.2
Q ss_pred ccCeeecCCcc-Cc-cccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCc
Q 041562 549 LLHMLDLSHNN-FS-GNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENN 607 (653)
Q Consensus 549 ~L~~L~Ls~N~-l~-~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~ 607 (653)
+|+.|.+.+++ .. ..+|..+ -++|++|++++|... ..|..+. .+|+.|+++.|.
T Consensus 133 sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 133 GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 56777775433 11 1122111 158999999999976 4565554 589999998873
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.68 E-value=2.4e-06 Score=85.29 Aligned_cols=63 Identities=24% Similarity=0.333 Sum_probs=32.5
Q ss_pred CCCCCCeEEccCccccccC-----chhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCC
Q 041562 339 SCKSLTAVNLARNQLEGQI-----SPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNF 402 (653)
Q Consensus 339 ~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~ 402 (653)
+++.|+.+.++.+...... ...-..+..|+.+.++++.... ...+..+..|++|+.+++-..+
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~-d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT-DATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch-HHHHHHHhhCcccceeeeechh
Confidence 3555666666555432111 1112335566677777766542 1234556667777776665543
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.65 E-value=7.8e-05 Score=67.56 Aligned_cols=83 Identities=25% Similarity=0.249 Sum_probs=37.5
Q ss_pred CcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEcc
Q 041562 246 LRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLG 325 (653)
Q Consensus 246 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~ 325 (653)
...+||++|.+... ..|..++.|.+|.|++|+|+..-|.--.-+++|+.|.+.+|.+..--....+..+|+|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 34445555544422 2344455555555555555544443333344455555555544411111133444555555555
Q ss_pred CCccc
Q 041562 326 SNLFT 330 (653)
Q Consensus 326 ~n~l~ 330 (653)
+|.++
T Consensus 122 ~Npv~ 126 (233)
T KOG1644|consen 122 GNPVE 126 (233)
T ss_pred CCchh
Confidence 55443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.47 E-value=0.00021 Score=64.82 Aligned_cols=41 Identities=24% Similarity=0.206 Sum_probs=16.9
Q ss_pred ccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccc
Q 041562 313 FSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL 353 (653)
Q Consensus 313 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 353 (653)
|..++.|.+|.+.+|.|+.+-|.--.-+++|+.|.|.+|.+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 33444444444444444433332222234444444444444
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.43 E-value=5.1e-05 Score=84.54 Aligned_cols=149 Identities=17% Similarity=0.233 Sum_probs=100.8
Q ss_pred CCCCEEECCCCCC-CCCCCccccC--CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCC
Q 041562 98 THLSHLNLSHNRL-SGEFPSSLSS--NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSI 174 (653)
Q Consensus 98 ~~L~~L~Ls~n~~-~~~~p~~~~~--~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L 174 (653)
.+|++||+++... ....|..++. |.|+.|.+++-.+...--..++.++++|..||+|+.+++.. .+.+++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccH
Confidence 5788999988543 3334444555 88999999887775433345677889999999999888765 344578899
Q ss_pred CEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCc--c----ccccCCCCCCEEeccCCcCcccccccc-cCCCCC
Q 041562 175 RHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSL--P----DDIYTATSLEQLSLSFNHISGSIKNGI-VNLTSL 246 (653)
Q Consensus 175 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~--p----~~l~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L 246 (653)
++|.+.+=.+.. ..-..+.++++|++||+|........ . +.-..+++|+.||.|++.+...+-+.+ ...++|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 999888776653 23346678999999999887654321 1 112357899999999988876444333 233444
Q ss_pred cEEE
Q 041562 247 RILE 250 (653)
Q Consensus 247 ~~L~ 250 (653)
+.+.
T Consensus 278 ~~i~ 281 (699)
T KOG3665|consen 278 QQIA 281 (699)
T ss_pred hhhh
Confidence 4443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.09 E-value=0.0015 Score=56.84 Aligned_cols=9 Identities=22% Similarity=0.475 Sum_probs=3.0
Q ss_pred CCCcCEEEc
Q 041562 316 LLKLRVLDL 324 (653)
Q Consensus 316 l~~L~~L~L 324 (653)
+++|+.+++
T Consensus 80 ~~~l~~i~~ 88 (129)
T PF13306_consen 80 CTNLKNIDI 88 (129)
T ss_dssp -TTECEEEE
T ss_pred ccccccccc
Confidence 333333333
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.05 E-value=0.0028 Score=55.20 Aligned_cols=83 Identities=27% Similarity=0.404 Sum_probs=28.3
Q ss_pred ccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCc
Q 041562 216 IYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLT 295 (653)
Q Consensus 216 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 295 (653)
|.++++|+.+.+.. .+.......|.++++|+.+.+..+ +.......|..+++++.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444455544442 233233334444444555544442 3322223344444444444433 22212223344444444
Q ss_pred EEEccC
Q 041562 296 LLNLQS 301 (653)
Q Consensus 296 ~L~L~~ 301 (653)
.+++..
T Consensus 85 ~i~~~~ 90 (129)
T PF13306_consen 85 NIDIPS 90 (129)
T ss_dssp EEEETT
T ss_pred ccccCc
Confidence 444443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.70 E-value=0.00095 Score=63.33 Aligned_cols=61 Identities=26% Similarity=0.321 Sum_probs=25.6
Q ss_pred CCCCCeEEeecCcCcccCCccccCCCCCcEEEccCC--cCccccChhhccCCCCcCEEEccCCccc
Q 041562 267 LTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN--FFEGDISVFNFSTLLKLRVLDLGSNLFT 330 (653)
Q Consensus 267 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 330 (653)
+..|+.+.+.+..++.. ..+..+++|++|.++.| .+.+.++. ....+|+|+++++++|++.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccc
Confidence 34444444444444421 22344445555555555 33322221 1222344444444444443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=9.2e-05 Score=70.27 Aligned_cols=101 Identities=26% Similarity=0.298 Sum_probs=65.1
Q ss_pred CCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEE
Q 041562 243 LTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVL 322 (653)
Q Consensus 243 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L 322 (653)
+.+.+.|++.++.++++ .....|+.|++|.|+-|+|+.. ..+..|++|++|+|..|.|...-....+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45667777777777754 3445778888888888888744 3477788888888888877632222345677777777
Q ss_pred EccCCcccccCCcc-----CcCCCCCCeEE
Q 041562 323 DLGSNLFTGSLPIT-----LNSCKSLTAVN 347 (653)
Q Consensus 323 ~L~~n~l~~~~~~~-----l~~l~~L~~L~ 347 (653)
.|..|.-.|..+.. +.-+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777665543322 23345555543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=7.5e-05 Score=70.87 Aligned_cols=57 Identities=30% Similarity=0.370 Sum_probs=29.0
Q ss_pred CCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccc
Q 041562 293 NLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE 354 (653)
Q Consensus 293 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 354 (653)
+.+.|+..++.+. +|. ....++.|++|.|+-|+|+.. ..+..|++|++|+|..|.|.
T Consensus 20 ~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc
Confidence 4445555555554 333 344555566666665555422 22445555555555555554
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.42 E-value=0.00056 Score=74.61 Aligned_cols=40 Identities=23% Similarity=0.072 Sum_probs=18.1
Q ss_pred HhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccC
Q 041562 142 FRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSN 181 (653)
Q Consensus 142 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~ 181 (653)
...++.|+.+.+..+.-............++.|+.|++++
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 3345566666665553222111111122456666666655
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.31 E-value=0.0026 Score=60.41 Aligned_cols=42 Identities=36% Similarity=0.472 Sum_probs=22.2
Q ss_pred ccCCCCCCeEEeecC--cCcccCCccccCCCCCcEEEccCCcCc
Q 041562 264 IGKLTNLESLVLHNN--SLSGSLPSSLKNCINLTLLNLQSNFFE 305 (653)
Q Consensus 264 l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~ 305 (653)
+-.+++|+.|.++.| ++.+.++.....+++|+++++++|++.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344555555555555 444444433444566666666666554
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.12 E-value=0.00065 Score=74.13 Aligned_cols=189 Identities=21% Similarity=0.151 Sum_probs=99.4
Q ss_pred CCCCCCEEECCCCCCCCC---CCccccCCCcCEEEccCC-CCCCCCc---hHHHhcCCCCcEEEccCCcCcccCChhhhh
Q 041562 96 NLTHLSHLNLSHNRLSGE---FPSSLSSNYIKIIDLSSN-HFQGKIP---STIFRLTQNLITFNVSNNSFTGLISWSAWV 168 (653)
Q Consensus 96 ~l~~L~~L~Ls~n~~~~~---~p~~~~~~~L~~L~Ls~n-~l~~~ip---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 168 (653)
.++.|+.|.+..+.-... .+.....+.|+.|+++++ ......+ ..+...+++|+.|+++++............
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 467778887776643222 222233378888888763 2211222 234556778888888887732222222223
Q ss_pred cCCCCCCEEEccCCc-CccC-CCccCCCCCCCCEEEcccCCCCC--CccccccCCCCCCEEeccCCcCcccccccccCCC
Q 041562 169 DSFCSIRHLDLSNNR-FTGP-VPLGLGSCSRLKTFRAGFNYLTG--SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLT 244 (653)
Q Consensus 169 ~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~ 244 (653)
..+++|++|.+..+. ++.. +......++.|++|+++.+.... .+.....++++++.+.+....- +.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~ 335 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP 335 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence 347788888877776 4432 22233457778888888776532 1223344566666655433221 34
Q ss_pred CCcEEEcccCcCC---cccCccccCCCCCCeEEeecCcCcccC-CccccCCCCC
Q 041562 245 SLRILELYSNSLT---GLIPRDIGKLTNLESLVLHNNSLSGSL-PSSLKNCINL 294 (653)
Q Consensus 245 ~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L 294 (653)
.++.+.+....-. ......+..+++++.+.+..+...... ...+.+++.|
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 4444444433221 111223456677777777776633222 1334555555
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.05 E-value=0.0029 Score=35.85 Aligned_cols=18 Identities=56% Similarity=0.813 Sum_probs=8.5
Q ss_pred CCeEeCCCCeeeeecCccc
Q 041562 574 LERMDLSKNHLSGEIPVSL 592 (653)
Q Consensus 574 L~~LdLs~N~l~~~ip~~l 592 (653)
|++|||++|+++ .+|.+|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555554 444433
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.55 E-value=0.0056 Score=34.69 Aligned_cols=22 Identities=50% Similarity=0.711 Sum_probs=18.1
Q ss_pred ccCeeecCCccCccccccccccC
Q 041562 549 LLHMLDLSHNNFSGNIPDQISQL 571 (653)
Q Consensus 549 ~L~~L~Ls~N~l~~~~p~~l~~l 571 (653)
+|++|||++|+++ .+|..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4889999999999 788877754
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.47 E-value=2e-05 Score=84.03 Aligned_cols=62 Identities=31% Similarity=0.384 Sum_probs=38.4
Q ss_pred CcCEEEccCCcCccc----chhhhcCCccCCeeeCcCCcCccCCchhh-----cCCCCCCEEEccCCcCccc
Q 041562 421 NLQVLGLAECKLKGQ----VPSWIGKLKKLQVLDLSFNQLTGSVPRFL-----GNMSSLFHIDFSNNLISGE 483 (653)
Q Consensus 421 ~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~N~l~~~ 483 (653)
.+..+++..+.+.+. ++..+...+.+++++++.|......+..+ .+. .++.+.++.|.++..
T Consensus 377 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~ 447 (478)
T KOG4308|consen 377 ELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITAL 447 (478)
T ss_pred ccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhc
Confidence 355566666655543 34445667788888888887654433222 234 778888888877643
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.39 E-value=0.00097 Score=71.28 Aligned_cols=87 Identities=31% Similarity=0.340 Sum_probs=42.4
Q ss_pred CCCCCEEeccCCcCccc----ccccccCCCC-CcEEEcccCcCCcc----cCccccCC-CCCCeEEeecCcCcccCC---
Q 041562 219 ATSLEQLSLSFNHISGS----IKNGIVNLTS-LRILELYSNSLTGL----IPRDIGKL-TNLESLVLHNNSLSGSLP--- 285 (653)
Q Consensus 219 l~~L~~L~Ls~n~i~~~----~~~~l~~l~~-L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~L~~n~l~~~~p--- 285 (653)
..++++|.+++|.++.. ....+...+. +..|++..|.+.+. ....+..+ ..++.++++.|.++..-.
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 34455555555544421 1122233333 44456665555432 11223333 455666666666654322
Q ss_pred -ccccCCCCCcEEEccCCcCc
Q 041562 286 -SSLKNCINLTLLNLQSNFFE 305 (653)
Q Consensus 286 -~~l~~l~~L~~L~L~~n~l~ 305 (653)
..+..++.++.+.++.|.+.
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHhhhHHHHHhhcccCccc
Confidence 23445566777777777665
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.76 E-value=0.047 Score=28.61 Aligned_cols=9 Identities=56% Similarity=0.748 Sum_probs=3.0
Q ss_pred CeeecCCcc
Q 041562 551 HMLDLSHNN 559 (653)
Q Consensus 551 ~~L~Ls~N~ 559 (653)
+.|+|++|+
T Consensus 4 ~~L~l~~n~ 12 (17)
T PF13504_consen 4 RTLDLSNNR 12 (17)
T ss_dssp SEEEETSS-
T ss_pred CEEECCCCC
Confidence 333333333
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.31 E-value=0.26 Score=29.04 Aligned_cols=14 Identities=57% Similarity=0.819 Sum_probs=8.2
Q ss_pred CCCCeEeCCCCeee
Q 041562 572 TNLERMDLSKNHLS 585 (653)
Q Consensus 572 ~~L~~LdLs~N~l~ 585 (653)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666655
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.31 E-value=0.26 Score=29.04 Aligned_cols=14 Identities=57% Similarity=0.819 Sum_probs=8.2
Q ss_pred CCCCeEeCCCCeee
Q 041562 572 TNLERMDLSKNHLS 585 (653)
Q Consensus 572 ~~L~~LdLs~N~l~ 585 (653)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666655
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.97 E-value=0.4 Score=28.22 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=11.3
Q ss_pred CcCEEEccCCCCCCCCchHHH
Q 041562 122 YIKIIDLSSNHFQGKIPSTIF 142 (653)
Q Consensus 122 ~L~~L~Ls~n~l~~~ip~~~~ 142 (653)
+|++|+|++|+++ .+|..+|
T Consensus 3 ~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 3 NLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCC-cCCHHHc
Confidence 4555555555555 6666554
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.97 E-value=0.4 Score=28.22 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=11.3
Q ss_pred CcCEEEccCCCCCCCCchHHH
Q 041562 122 YIKIIDLSSNHFQGKIPSTIF 142 (653)
Q Consensus 122 ~L~~L~Ls~n~l~~~ip~~~~ 142 (653)
+|++|+|++|+++ .+|..+|
T Consensus 3 ~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 3 NLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCC-cCCHHHc
Confidence 4555555555555 6666554
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.93 E-value=0.11 Score=30.03 Aligned_cols=13 Identities=54% Similarity=0.897 Sum_probs=5.0
Q ss_pred CCCeEeCCCCeee
Q 041562 573 NLERMDLSKNHLS 585 (653)
Q Consensus 573 ~L~~LdLs~N~l~ 585 (653)
+|++|||++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.50 E-value=0.03 Score=52.28 Aligned_cols=62 Identities=24% Similarity=0.251 Sum_probs=27.7
Q ss_pred cCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcC
Q 041562 241 VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFF 304 (653)
Q Consensus 241 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 304 (653)
.-++.|..|+++.|.+. ..|..++.+..++.+++..|..+ ..|.+++..+.++++++-.|.+
T Consensus 62 s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 62 SILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred HHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcc
Confidence 33334444444444443 33444444444444444444443 3444444444444444444443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.40 E-value=0.034 Score=51.93 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=41.3
Q ss_pred cCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcC
Q 041562 241 VNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLR 320 (653)
Q Consensus 241 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 320 (653)
......+.||++.|++... -..|+-++.|..|+++.|.+. ..|..++....++.+++..|..+ ..|. ++...+.++
T Consensus 39 ~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~~~k 114 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKEPHPK 114 (326)
T ss_pred hccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cccccCCcc
Confidence 3344444555555544322 123444445555555555554 44555555555555555555444 3342 455555555
Q ss_pred EEEccCCcc
Q 041562 321 VLDLGSNLF 329 (653)
Q Consensus 321 ~L~L~~n~l 329 (653)
++++-.|.+
T Consensus 115 ~~e~k~~~~ 123 (326)
T KOG0473|consen 115 KNEQKKTEF 123 (326)
T ss_pred hhhhccCcc
Confidence 555555544
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.13 E-value=0.19 Score=46.22 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=19.7
Q ss_pred CCCeEEeecCcCcccCCccccCCCCCcEEEccCCc
Q 041562 269 NLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNF 303 (653)
Q Consensus 269 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 303 (653)
.++.+|-++..|...--+.+.+++.++.|.+.++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 45556666666555444455555555555555553
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.02 E-value=2.1 Score=25.24 Aligned_cols=15 Identities=60% Similarity=0.906 Sum_probs=10.3
Q ss_pred CCCCCeEeCCCCeee
Q 041562 571 LTNLERMDLSKNHLS 585 (653)
Q Consensus 571 l~~L~~LdLs~N~l~ 585 (653)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.74 E-value=1.9 Score=25.41 Aligned_cols=12 Identities=33% Similarity=0.720 Sum_probs=5.8
Q ss_pred CCeEeCCCCeee
Q 041562 574 LERMDLSKNHLS 585 (653)
Q Consensus 574 L~~LdLs~N~l~ 585 (653)
|++|++++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444444444444
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.93 E-value=0.75 Score=42.42 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=50.0
Q ss_pred CEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCC-CCccccC--CCcCEEEccCCC-CCCCCchHHHhcCCCCcE
Q 041562 75 RVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGE-FPSSLSS--NYIKIIDLSSNH-FQGKIPSTIFRLTQNLIT 150 (653)
Q Consensus 75 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~-~p~~~~~--~~L~~L~Ls~n~-l~~~ip~~~~~~l~~L~~ 150 (653)
.|+.+|-++..+...--+.+.+++.++.|.+.++.--+. --+.++. ++|+.|++++|. |+..--. ....+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhhhHH
Confidence 588999999888877667788888999998888764321 1112222 677778887663 4422112 2233556666
Q ss_pred EEccC
Q 041562 151 FNVSN 155 (653)
Q Consensus 151 L~Ls~ 155 (653)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 55544
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=62.14 E-value=34 Score=36.16 Aligned_cols=83 Identities=20% Similarity=0.139 Sum_probs=37.0
Q ss_pred CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccc---cCCCCCCEEeccCCcCcccccccccCC---C
Q 041562 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDI---YTATSLEQLSLSFNHISGSIKNGIVNL---T 244 (653)
Q Consensus 171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~n~i~~~~~~~l~~l---~ 244 (653)
-+.+++++++.|.+....|..+..-.. -+.+..+..+...-..+ ..-..+++++++.|.....+|..+..+ .
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 455677777777766555544432111 03344444332111110 011245566666666555555433222 2
Q ss_pred CCcEEEcccCc
Q 041562 245 SLRILELYSNS 255 (653)
Q Consensus 245 ~L~~L~L~~n~ 255 (653)
.++.++.+...
T Consensus 242 vl~~ld~s~tg 252 (553)
T KOG4242|consen 242 VLFKLDRSTTG 252 (553)
T ss_pred hhhcccccccc
Confidence 34455554443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.98 E-value=7 Score=23.42 Aligned_cols=13 Identities=46% Similarity=0.731 Sum_probs=6.7
Q ss_pred CCCEEECCCCCCC
Q 041562 99 HLSHLNLSHNRLS 111 (653)
Q Consensus 99 ~L~~L~Ls~n~~~ 111 (653)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.76 E-value=5.1 Score=42.81 Aligned_cols=15 Identities=27% Similarity=0.056 Sum_probs=8.8
Q ss_pred CCcCEEEccCCcCcc
Q 041562 420 KNLQVLGLAECKLKG 434 (653)
Q Consensus 420 ~~L~~L~L~~n~l~~ 434 (653)
..|++|.+.+|.+..
T Consensus 270 l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 270 LPLEELVLEGNPLCT 284 (585)
T ss_pred CCHHHeeecCCcccc
Confidence 346666666666653
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=60.48 E-value=25 Score=37.11 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=11.2
Q ss_pred CCcCEEEccCCCCCCCCchH
Q 041562 121 NYIKIIDLSSNHFQGKIPST 140 (653)
Q Consensus 121 ~~L~~L~Ls~n~l~~~ip~~ 140 (653)
+.++++|++.|.+..++|..
T Consensus 165 pr~r~~dls~npi~dkvpih 184 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIH 184 (553)
T ss_pred chhhhhccCCCcccccCCcc
Confidence 45566666666655555443
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.51 E-value=22 Score=38.30 Aligned_cols=14 Identities=36% Similarity=0.382 Sum_probs=8.7
Q ss_pred CCCCEEeccCCcCc
Q 041562 220 TSLEQLSLSFNHIS 233 (653)
Q Consensus 220 ~~L~~L~Ls~n~i~ 233 (653)
..|++|-+.+|.+.
T Consensus 270 l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 270 LPLEELVLEGNPLC 283 (585)
T ss_pred CCHHHeeecCCccc
Confidence 34666666676654
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.60 E-value=40 Score=43.76 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=23.1
Q ss_pred EccCCCCCCCCchHHHhcCCCCcEEEccCCcCc
Q 041562 127 DLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFT 159 (653)
Q Consensus 127 ~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~ 159 (653)
||++|+|+ .+|...|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 46667776 777777777777777777777654
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=27.23 E-value=33 Score=44.41 Aligned_cols=33 Identities=33% Similarity=0.381 Sum_probs=27.4
Q ss_pred ecCCccCccccccccccCCCCCeEeCCCCeeee
Q 041562 554 DLSHNNFSGNIPDQISQLTNLERMDLSKNHLSG 586 (653)
Q Consensus 554 ~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 586 (653)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999987777788888999999999987753
No 95
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=26.98 E-value=41 Score=19.50 Aligned_cols=11 Identities=45% Similarity=0.356 Sum_probs=5.3
Q ss_pred ccCCeeeCcCC
Q 041562 444 KKLQVLDLSFN 454 (653)
Q Consensus 444 ~~L~~L~Ls~n 454 (653)
++|+.|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34445555544
Done!