Query 041562
Match_columns 653
No_of_seqs 858 out of 4782
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 14:11:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.3E-82 4.5E-87 729.6 46.6 604 29-645 4-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.9E-59 9.9E-64 536.1 39.3 520 74-610 151-742 (768)
3 4eco_A Uncharacterized protein 100.0 5.8E-59 2E-63 521.6 23.5 473 34-609 27-600 (636)
4 1ziw_A TOLL-like receptor 3; i 100.0 7.5E-56 2.6E-60 503.0 44.1 552 74-636 25-626 (680)
5 4ecn_A Leucine-rich repeat pro 100.0 5.7E-56 2E-60 505.2 30.8 432 31-478 263-786 (876)
6 3t6q_A CD180 antigen; protein- 100.0 9.2E-55 3.1E-59 487.4 35.4 490 74-634 33-562 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.6E-53 5.5E-58 477.3 33.6 488 74-613 32-562 (606)
8 3j0a_A TOLL-like receptor 5; m 100.0 6.4E-53 2.2E-57 488.4 36.3 524 63-636 14-564 (844)
9 1ziw_A TOLL-like receptor 3; i 100.0 3.5E-52 1.2E-56 472.8 41.7 531 74-614 49-627 (680)
10 3t6q_A CD180 antigen; protein- 100.0 2.4E-51 8.2E-56 459.7 35.9 473 73-614 56-565 (606)
11 3vq2_A TLR4, TOLL-like recepto 100.0 1.9E-50 6.6E-55 452.3 36.4 464 73-589 55-562 (606)
12 2z63_A TOLL-like receptor 4, v 100.0 1.4E-49 4.9E-54 442.1 30.9 513 74-636 28-560 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-48 4.5E-53 432.3 32.0 491 62-614 3-515 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 7.5E-48 2.6E-52 428.2 34.7 442 74-590 52-536 (570)
15 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-47 4.2E-52 444.1 35.8 500 78-631 8-538 (844)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-47 9.6E-52 418.6 27.6 453 77-613 3-485 (520)
17 4eco_A Uncharacterized protein 100.0 1.9E-48 6.5E-53 436.4 17.6 461 98-635 81-603 (636)
18 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-46 4.9E-51 415.9 30.3 478 63-589 12-514 (549)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-46 3.6E-51 414.0 27.9 455 101-636 3-485 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 1.9E-44 6.3E-49 410.6 29.9 445 121-611 323-842 (876)
21 4g8a_A TOLL-like receptor 4; l 100.0 3.3E-43 1.1E-47 395.9 36.3 488 74-635 52-583 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.8E-44 2.7E-48 394.6 25.7 454 77-614 34-515 (562)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-43 5.3E-48 392.2 26.4 454 99-635 32-513 (562)
24 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-42 4.6E-47 354.7 19.9 290 32-352 1-302 (313)
25 3v47_A TOLL-like receptor 5B a 100.0 1.5E-41 5.3E-46 366.5 29.3 370 173-618 31-417 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 1.1E-40 3.8E-45 357.4 27.5 325 74-481 11-350 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 3.4E-40 1.2E-44 356.0 30.3 386 101-590 13-413 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 4.5E-40 1.5E-44 352.7 28.8 404 95-633 8-430 (454)
29 4g8a_A TOLL-like receptor 4; l 100.0 7.6E-39 2.6E-43 360.3 35.3 463 74-611 76-582 (635)
30 3bz5_A Internalin-J, INLJ; leu 100.0 2E-37 6.8E-42 332.4 31.6 212 91-331 35-247 (457)
31 3bz5_A Internalin-J, INLJ; leu 100.0 3.9E-37 1.3E-41 330.2 32.7 362 111-615 31-393 (457)
32 1o6v_A Internalin A; bacterial 100.0 3.1E-36 1E-40 325.6 37.6 344 146-586 46-389 (466)
33 1o6v_A Internalin A; bacterial 100.0 2.3E-36 8E-41 326.5 34.7 346 170-610 44-389 (466)
34 2id5_A Lingo-1, leucine rich r 100.0 4.2E-37 1.4E-41 333.8 27.6 347 175-613 14-360 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 3.4E-35 1.2E-39 310.1 29.2 310 121-483 45-354 (390)
36 3o6n_A APL1; leucine-rich repe 100.0 2.7E-35 9.1E-40 310.9 28.1 336 195-637 44-379 (390)
37 3oja_B Anopheles plasmodium-re 100.0 4E-35 1.4E-39 326.5 28.0 335 195-636 50-384 (597)
38 2id5_A Lingo-1, leucine rich r 100.0 1.6E-34 5.5E-39 313.4 31.3 322 124-483 14-335 (477)
39 3oja_B Anopheles plasmodium-re 100.0 3.9E-34 1.3E-38 318.5 30.4 312 121-485 51-362 (597)
40 1ogq_A PGIP-2, polygalacturona 100.0 3.4E-35 1.2E-39 299.8 20.0 164 420-642 149-313 (313)
41 4fmz_A Internalin; leucine ric 100.0 8.1E-33 2.8E-37 287.2 30.5 263 240-609 84-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 3.5E-32 1.2E-36 282.4 32.5 260 171-481 87-346 (347)
43 4fcg_A Uncharacterized protein 100.0 4.7E-34 1.6E-38 293.1 15.7 266 31-302 21-311 (328)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-31 5.1E-36 275.7 24.6 294 197-583 34-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 4.7E-31 1.6E-35 271.7 27.6 253 197-489 32-284 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 9.1E-31 3.1E-35 269.8 27.2 201 173-381 55-257 (332)
47 1z7x_W Ribonuclease inhibitor; 100.0 2.1E-34 7.3E-39 311.2 -1.8 339 144-483 54-442 (461)
48 1xku_A Decorin; proteoglycan, 100.0 3.8E-30 1.3E-34 265.0 29.4 245 121-379 31-277 (330)
49 1z7x_W Ribonuclease inhibitor; 100.0 2.8E-34 9.6E-39 310.2 -1.6 305 172-481 3-354 (461)
50 3ogk_B Coronatine-insensitive 100.0 1.2E-33 4E-38 315.4 -0.4 455 60-606 39-548 (592)
51 2z80_A TOLL-like receptor 2, v 100.0 4.2E-29 1.4E-33 259.7 17.1 286 55-358 22-318 (353)
52 2z66_A Variable lymphocyte rec 100.0 3.3E-29 1.1E-33 255.1 15.1 283 63-364 7-297 (306)
53 3ogk_B Coronatine-insensitive 100.0 5E-31 1.7E-35 294.1 0.9 329 218-611 162-528 (592)
54 2z80_A TOLL-like receptor 2, v 100.0 1.7E-28 6E-33 255.0 19.2 283 171-485 30-318 (353)
55 2z66_A Variable lymphocyte rec 100.0 1.3E-27 4.5E-32 243.2 21.1 247 101-354 10-261 (306)
56 4fcg_A Uncharacterized protein 100.0 2.8E-27 9.6E-32 242.7 21.2 235 121-379 81-315 (328)
57 1ozn_A Reticulon 4 receptor; N 99.9 7.4E-27 2.5E-31 235.1 22.3 206 172-378 32-238 (285)
58 2p1m_B Transport inhibitor res 99.9 1.3E-30 4.4E-35 290.9 -7.1 460 61-613 33-548 (594)
59 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-26 7.8E-31 253.8 25.5 279 54-379 13-298 (622)
60 1ozn_A Reticulon 4 receptor; N 99.9 5.4E-27 1.8E-31 236.1 18.4 223 77-330 14-238 (285)
61 1wwl_A Monocyte differentiatio 99.9 8.5E-29 2.9E-33 252.5 4.8 203 171-379 94-310 (312)
62 1wwl_A Monocyte differentiatio 99.9 4.7E-28 1.6E-32 247.0 8.0 252 94-355 39-310 (312)
63 3zyj_A Leucine-rich repeat-con 99.9 9.2E-26 3.1E-30 241.7 25.8 247 198-481 45-292 (440)
64 3zyi_A Leucine-rich repeat-con 99.9 7.3E-26 2.5E-30 243.3 25.1 247 100-378 56-303 (452)
65 3zyi_A Leucine-rich repeat-con 99.9 9.1E-26 3.1E-30 242.6 25.8 247 198-481 56-303 (452)
66 3zyj_A Leucine-rich repeat-con 99.9 6.2E-26 2.1E-30 243.0 24.3 247 100-377 45-291 (440)
67 2o6q_A Variable lymphocyte rec 99.9 5.3E-26 1.8E-30 226.8 21.2 217 60-306 2-219 (270)
68 3g06_A SSPH2 (leucine-rich rep 99.9 8.6E-25 3E-29 241.2 30.2 266 174-491 42-307 (622)
69 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-27 5E-32 243.9 7.2 257 75-373 11-270 (317)
70 2p1m_B Transport inhibitor res 99.9 6.1E-29 2.1E-33 277.3 -4.7 374 170-610 103-520 (594)
71 3o53_A Protein LRIM1, AGAP0063 99.9 7.8E-27 2.7E-31 238.5 9.7 242 173-459 35-278 (317)
72 3oja_A Leucine-rich immune mol 99.9 3.2E-26 1.1E-30 247.6 11.6 220 292-613 34-255 (487)
73 3oja_A Leucine-rich immune mol 99.9 7.8E-26 2.7E-30 244.5 10.4 235 96-372 32-269 (487)
74 2z62_A TOLL-like receptor 4, v 99.9 1.8E-23 6.1E-28 209.2 20.5 204 147-354 29-237 (276)
75 2ast_B S-phase kinase-associat 99.9 7.7E-26 2.6E-30 233.4 2.4 237 59-302 33-282 (336)
76 2z62_A TOLL-like receptor 4, v 99.9 6.5E-23 2.2E-27 205.2 21.1 205 172-378 28-237 (276)
77 2o6q_A Variable lymphocyte rec 99.9 2.4E-22 8.2E-27 200.2 24.0 201 174-378 18-218 (270)
78 1p9a_G Platelet glycoprotein I 99.9 2.5E-22 8.5E-27 201.9 22.5 204 93-305 5-208 (290)
79 3rfs_A Internalin B, repeat mo 99.9 8.4E-23 2.9E-27 203.7 18.6 184 171-364 62-245 (272)
80 3rfs_A Internalin B, repeat mo 99.9 1.4E-22 4.6E-27 202.2 18.5 228 99-342 20-247 (272)
81 1p9a_G Platelet glycoprotein I 99.9 9.1E-22 3.1E-26 197.8 22.9 201 170-378 8-208 (290)
82 4glp_A Monocyte differentiatio 99.9 4.2E-23 1.4E-27 210.2 12.9 201 147-354 92-307 (310)
83 3m19_A Variable lymphocyte rec 99.9 5.5E-22 1.9E-26 195.4 18.6 136 171-306 58-193 (251)
84 3goz_A Leucine-rich repeat-con 99.9 1.6E-23 5.6E-28 218.0 5.4 83 79-161 3-95 (362)
85 2ca6_A RAN GTPase-activating p 99.9 1.5E-23 5.1E-28 220.5 4.6 237 144-381 30-319 (386)
86 3goz_A Leucine-rich repeat-con 99.9 3.9E-23 1.4E-27 215.2 5.9 176 202-378 4-209 (362)
87 2ast_B S-phase kinase-associat 99.9 2.3E-23 7.8E-28 214.8 4.0 224 99-327 48-282 (336)
88 2ca6_A RAN GTPase-activating p 99.9 1.5E-23 5.3E-28 220.4 2.2 248 211-485 23-320 (386)
89 2xwt_C Thyrotropin receptor; s 99.9 2.4E-21 8.3E-26 189.3 17.5 196 173-375 32-236 (239)
90 4glp_A Monocyte differentiatio 99.9 4.6E-22 1.6E-26 202.4 12.5 136 146-281 64-210 (310)
91 2xwt_C Thyrotropin receptor; s 99.9 5E-21 1.7E-25 187.0 18.0 189 187-382 25-222 (239)
92 3m19_A Variable lymphocyte rec 99.9 2.4E-20 8.3E-25 183.5 20.8 178 174-355 16-193 (251)
93 1h6u_A Internalin H; cell adhe 99.9 1.1E-20 3.7E-25 191.8 18.0 193 171-380 40-232 (308)
94 1h6u_A Internalin H; cell adhe 99.8 2.1E-20 7.3E-25 189.7 17.9 147 171-330 84-230 (308)
95 3cvr_A Invasion plasmid antige 99.8 2.6E-21 8.9E-26 210.8 11.7 203 55-288 35-250 (571)
96 2o6s_A Variable lymphocyte rec 99.8 2E-20 6.8E-25 178.6 15.4 182 62-267 6-188 (208)
97 4ay9_X Follicle-stimulating ho 99.8 5.5E-20 1.9E-24 190.3 18.7 202 175-381 12-218 (350)
98 4ay9_X Follicle-stimulating ho 99.8 1.2E-19 3.9E-24 187.9 17.9 105 101-209 12-117 (350)
99 2o6s_A Variable lymphocyte rec 99.8 1.4E-19 4.9E-24 172.6 16.5 160 173-340 29-188 (208)
100 3cvr_A Invasion plasmid antige 99.8 9E-19 3.1E-23 190.8 18.6 166 172-363 80-252 (571)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-19 5.1E-24 173.9 10.1 138 420-613 32-170 (220)
102 3e6j_A Variable lymphocyte rec 99.8 2.9E-18 1E-22 165.9 16.9 163 55-259 11-174 (229)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 5.9E-18 2E-22 162.6 15.5 117 193-309 54-170 (220)
104 1h6t_A Internalin B; cell adhe 99.8 1E-17 3.5E-22 168.3 16.8 169 171-354 45-213 (291)
105 1h6t_A Internalin B; cell adhe 99.8 5.7E-18 1.9E-22 170.2 14.7 170 145-331 45-214 (291)
106 4b8c_D Glucose-repressible alc 99.8 1.3E-19 4.3E-24 204.8 2.3 214 34-261 129-358 (727)
107 2v9t_B SLIT homolog 2 protein 99.7 2.2E-17 7.6E-22 158.6 16.3 133 245-378 33-165 (220)
108 2v9t_B SLIT homolog 2 protein 99.7 2.8E-17 9.7E-22 157.8 16.9 107 198-304 34-140 (220)
109 1m9s_A Internalin B; cell inva 99.7 7.5E-18 2.6E-22 185.6 14.5 190 99-306 22-211 (605)
110 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.8E-22 173.7 14.4 152 175-330 21-176 (361)
111 2xot_A Amphoterin-induced prot 99.7 1.9E-17 6.4E-22 172.0 15.3 156 174-330 41-202 (361)
112 1w8a_A SLIT protein; signaling 99.7 3.1E-18 1.1E-22 160.9 7.9 132 423-613 11-143 (192)
113 1m9s_A Internalin B; cell inva 99.7 2.1E-17 7.3E-22 182.0 14.8 190 122-331 22-211 (605)
114 3e6j_A Variable lymphocyte rec 99.7 1E-16 3.5E-21 155.1 17.9 151 174-329 21-171 (229)
115 4ezg_A Putative uncharacterize 99.7 2.6E-17 8.8E-22 155.4 12.4 150 171-329 43-193 (197)
116 4ezg_A Putative uncharacterize 99.7 3.9E-17 1.3E-21 154.1 12.4 153 193-353 41-193 (197)
117 1dce_A Protein (RAB geranylger 99.7 4.9E-20 1.7E-24 201.8 -10.2 104 198-306 443-547 (567)
118 1dce_A Protein (RAB geranylger 99.7 2.7E-19 9.2E-24 196.0 -6.3 63 549-613 487-550 (567)
119 1xeu_A Internalin C; cellular 99.7 4.3E-17 1.5E-21 161.2 8.9 168 171-354 18-185 (263)
120 1w8a_A SLIT protein; signaling 99.7 1.8E-16 6.2E-21 148.8 12.3 163 420-641 29-192 (192)
121 1xeu_A Internalin C; cellular 99.7 1.1E-16 3.9E-21 158.1 10.9 168 146-331 19-186 (263)
122 4b8c_D Glucose-repressible alc 99.7 2.2E-17 7.4E-22 186.6 4.8 222 121-377 173-403 (727)
123 2ell_A Acidic leucine-rich nuc 99.6 2.3E-16 7.9E-21 144.7 9.2 137 419-614 23-164 (168)
124 3sb4_A Hypothetical leucine ri 99.6 1.7E-16 5.8E-21 162.6 8.0 291 219-602 24-327 (329)
125 3sb4_A Hypothetical leucine ri 99.6 4.7E-16 1.6E-20 159.3 10.0 218 171-397 100-327 (329)
126 2je0_A Acidic leucine-rich nuc 99.6 4.5E-16 1.6E-20 139.6 7.7 129 419-605 16-149 (149)
127 2wfh_A SLIT homolog 2 protein 99.6 3.7E-15 1.3E-19 139.7 12.9 128 423-610 13-140 (193)
128 2ell_A Acidic leucine-rich nuc 99.6 1.9E-15 6.6E-20 138.5 10.8 131 172-304 24-159 (168)
129 2o6r_A Variable lymphocyte rec 99.6 3.2E-15 1.1E-19 138.3 12.0 134 422-614 9-142 (177)
130 2je0_A Acidic leucine-rich nuc 99.6 1.8E-15 6.2E-20 135.7 8.9 128 171-300 16-148 (149)
131 2wfh_A SLIT homolog 2 protein 99.6 2.7E-14 9.3E-19 133.8 15.0 128 175-306 13-140 (193)
132 4fdw_A Leucine rich hypothetic 99.6 2.3E-13 8E-18 142.4 22.2 267 96-378 111-383 (401)
133 2o6r_A Variable lymphocyte rec 99.5 5.9E-14 2E-18 129.7 14.8 130 175-307 10-139 (177)
134 4fdw_A Leucine rich hypothetic 99.5 4.5E-13 1.5E-17 140.2 22.5 265 121-403 113-382 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-14 6.4E-19 133.0 8.0 132 418-610 17-154 (176)
136 1a9n_A U2A', U2A'; complex (nu 99.5 9.3E-14 3.2E-18 128.2 8.6 41 240-280 60-100 (176)
137 4fs7_A Uncharacterized protein 99.4 6.8E-12 2.3E-16 131.7 22.2 63 136-202 61-123 (394)
138 4fs7_A Uncharacterized protein 99.4 6.9E-12 2.4E-16 131.6 21.3 326 115-494 64-390 (394)
139 3g39_A Variable lymphocyte rec 99.4 4.3E-13 1.5E-17 122.9 10.4 58 422-482 11-68 (170)
140 1ds9_A Outer arm dynein; leuci 99.4 1.5E-15 5E-20 143.4 -7.1 127 239-371 43-180 (198)
141 1ds9_A Outer arm dynein; leuci 99.4 2.1E-15 7.1E-20 142.3 -6.6 159 171-354 17-185 (198)
142 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.4E-17 120.1 10.8 57 423-482 15-71 (174)
143 3g39_A Variable lymphocyte rec 99.4 4.6E-12 1.6E-16 116.0 12.4 86 220-305 30-115 (170)
144 2r9u_A Variable lymphocyte rec 99.3 9.3E-12 3.2E-16 114.3 12.2 86 220-305 33-118 (174)
145 3un9_A NLR family member X1; l 99.3 1.1E-13 3.8E-18 143.4 -2.3 137 97-233 71-224 (372)
146 3un9_A NLR family member X1; l 99.2 3.3E-13 1.1E-17 139.8 -2.1 164 121-305 72-252 (372)
147 4gt6_A Cell surface protein; l 99.2 1.5E-09 5.2E-14 113.7 25.1 132 333-478 257-388 (394)
148 4gt6_A Cell surface protein; l 99.2 2.3E-09 7.9E-14 112.3 25.1 56 549-608 335-390 (394)
149 2ifg_A High affinity nerve gro 99.2 6.3E-11 2.2E-15 122.0 10.2 105 423-586 11-117 (347)
150 2ifg_A High affinity nerve gro 99.1 1.1E-10 3.8E-15 120.1 9.4 92 212-305 24-116 (347)
151 4h09_A Hypothetical leucine ri 98.9 2.3E-07 8E-12 96.4 25.3 295 75-399 47-341 (379)
152 2ra8_A Uncharacterized protein 98.9 3.3E-10 1.1E-14 116.3 3.2 84 218-303 250-341 (362)
153 2ra8_A Uncharacterized protein 98.9 7.8E-10 2.7E-14 113.5 4.8 134 419-607 192-341 (362)
154 4h09_A Hypothetical leucine ri 98.8 8.4E-07 2.9E-11 92.2 25.3 147 334-492 210-356 (379)
155 3rw6_A Nuclear RNA export fact 98.6 4.4E-10 1.5E-14 109.3 -7.6 21 62-82 77-98 (267)
156 1io0_A Tropomodulin; LRR prote 98.5 2.9E-08 9.9E-13 91.8 3.2 61 549-609 94-164 (185)
157 1io0_A Tropomodulin; LRR prote 98.3 1.3E-07 4.4E-12 87.4 2.0 12 171-182 35-46 (185)
158 3rw6_A Nuclear RNA export fact 98.3 1.6E-07 5.4E-12 91.3 1.9 40 442-481 168-209 (267)
159 3e4g_A ATP synthase subunit S, 97.9 3.6E-06 1.2E-10 75.8 2.4 82 221-302 62-149 (176)
160 3e4g_A ATP synthase subunit S, 97.9 8.2E-06 2.8E-10 73.4 4.0 84 196-279 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00017 5.7E-09 66.1 3.4 60 549-608 99-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00023 8E-09 65.1 1.6 15 219-233 97-111 (197)
163 3rfe_A Platelet glycoprotein I 96.6 0.0023 7.9E-08 54.6 5.5 57 551-609 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0054 1.9E-07 52.3 6.7 56 102-159 12-68 (130)
165 2lz0_A Uncharacterized protein 33.3 98 0.0034 24.1 6.2 38 312-350 15-52 (100)
166 2lz0_A Uncharacterized protein 27.9 1.6E+02 0.0054 22.8 6.5 13 239-251 38-50 (100)
167 3ox7_P MH027; urokinase-type p 20.5 33 0.0011 17.9 0.7 10 60-69 5-14 (23)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.3e-82 Score=729.55 Aligned_cols=604 Identities=30% Similarity=0.448 Sum_probs=460.8
Q ss_pred ccCCcCCHHhHHHHHHhhhcCCCCC--CCCCCCCCCccccceEeCCCCCEEEEEcCCCCccee---cc------------
Q 041562 29 SFCQACNQIDQDSLLSLGFNISSPG--LNWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGT---IS------------ 91 (653)
Q Consensus 29 ~~~~~~~~~~~~~ll~~k~~~~~~~--~~W~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~---~~------------ 91 (653)
++++++.++|++||++||+++.++. ++|+.++|||+|+||+|+ .|||++|+|+++++.|. ++
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred CccccCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence 3444557889999999999998775 799888899999999998 79999999999999987 44
Q ss_pred -----------ccccCCCCCCEEECCCCCCCCCCCc--cccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCc
Q 041562 92 -----------LSIGNLTHLSHLNLSHNRLSGEFPS--SLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNS 157 (653)
Q Consensus 92 -----------~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~ 157 (653)
+.++++++|++|||++|.++|.+|. .++. ++|++|+|++|.+.+.+|..++..+++|++|++++|.
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 162 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC
T ss_pred CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc
Confidence 4678889999999999999888887 6666 8888888888888877777655567777777777777
Q ss_pred CcccCChhhh-h----------------------cCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccc
Q 041562 158 FTGLISWSAW-V----------------------DSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPD 214 (653)
Q Consensus 158 l~~~~~~~~~-~----------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 214 (653)
+++..+..+. . ..+++|++|++++|.+++.+|. ++++++|++|++++|.+++.+|.
T Consensus 163 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp CEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH
T ss_pred cCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH
Confidence 7665554310 1 2456677777777777766665 77777777777777777777777
Q ss_pred cccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCC-CCCCeEEeecCcCcccCCccccCCCC
Q 041562 215 DIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKL-TNLESLVLHNNSLSGSLPSSLKNCIN 293 (653)
Q Consensus 215 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~ 293 (653)
.+..+++|++|++++|.+.+.+|.. .+++|++|++++|++++.+|..+... ++|++|++++|.+++.+|..++++++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred HHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 7777777777777777776655543 56667777777777766777766654 77888888888877777777777888
Q ss_pred CcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcC---------------------------CCCCCeE
Q 041562 294 LTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS---------------------------CKSLTAV 346 (653)
Q Consensus 294 L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~---------------------------l~~L~~L 346 (653)
|++|++++|.+.|.+|...+..+++|++|++++|.+++.+|..+.. +++|++|
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 8888888887777777655777777777777777776655555443 3455666
Q ss_pred EccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEE
Q 041562 347 NLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLG 426 (653)
Q Consensus 347 ~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~ 426 (653)
++++|.+++.+|..+..+++|++|++++|.++.... ..+..+++|+.|++++|.+.+.+|..+. .+++|++|+
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~~~-----~l~~L~~L~ 472 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLNMLEGEIPQELM-----YVKTLETLI 472 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGG-----GCTTCCEEE
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcccCccc--HHHhcCCCCCEEECCCCcccCcCCHHHc-----CCCCceEEE
Confidence 666666666666666777777777777776653221 3456677788888888887777765443 578888889
Q ss_pred ccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccccccccc
Q 041562 427 LAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANES 506 (653)
Q Consensus 427 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~ 506 (653)
+++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..+..+++|+.+++.++....
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 99998888888888888899999999999888888888888899999999999988888888888888888887665432
Q ss_pred ccccccccCCcc------------------------------------------------ccc--------------ccc
Q 041562 507 YLEFSLFKGSNN------------------------------------------------FIG--------------EYK 524 (653)
Q Consensus 507 ~~~~~~~~~~~~------------------------------------------------~~~--------------~~~ 524 (653)
.++...+..... ... ...
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 222111110000 000 001
Q ss_pred ccccccccc-ceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeec
Q 041562 525 KILTFHEQY-TWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNV 603 (653)
Q Consensus 525 ~~~~~~~~~-~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~l 603 (653)
.+..++.+. .++|.+|.+++.++ .|+.|||++|+++|.+|..|+++++|++||||+|+++|.+|..+..+++|++||+
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~-~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMP-YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred cccEEECcCCcccccCCHHHhccc-cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 111122221 27899999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCCCCCCCcCCCccCCCCCCCCCCCCCCCCCCC
Q 041562 604 AENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCSVQP 645 (653)
Q Consensus 604 s~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~~~~c~~~~ 645 (653)
++|+++|.||++++|.+|+..+|.|||+|||+|+. +|....
T Consensus 712 s~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp CSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred cCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 99999999999999999999999999999999985 897543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.9e-59 Score=536.07 Aligned_cols=520 Identities=31% Similarity=0.440 Sum_probs=410.1
Q ss_pred CCEEEEEcCCCCcceecccc---ccCCCCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcE
Q 041562 74 GRVSHLWLPWKGLTGTISLS---IGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLIT 150 (653)
Q Consensus 74 ~~v~~L~L~~~~l~g~~~~~---l~~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~ 150 (653)
.++++|+|+++.+++..+.. +.++++|++|++++|.+++.+|. ...++|++|+|++|.+++.+|. +..+++|++
T Consensus 151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~ 227 (768)
T 3rgz_A 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPF--LGDCSALQH 227 (768)
T ss_dssp TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCB--CTTCCSCCE
T ss_pred CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcc--cccCCCCCE
Confidence 47899999999999988877 88899999999999998876654 2338899999999999877776 667889999
Q ss_pred EEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCC-CCCCEEeccC
Q 041562 151 FNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTA-TSLEQLSLSF 229 (653)
Q Consensus 151 L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~ 229 (653)
|++++|.+++.+|..+. .+++|++|++++|.+++.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++
T Consensus 228 L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 228 LDISGNKLSGDFSRAIS--TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303 (768)
T ss_dssp EECCSSCCCSCHHHHTT--TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS
T ss_pred EECcCCcCCCcccHHHh--cCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC
Confidence 99999999888776654 6889999999999888877765 78889999999998888888888775 8899999999
Q ss_pred CcCcccccccccCCCCCcEEEcccCcCCcccCcc-ccCCCCCCeEEeecCcCcccCCccccCCC-CCcEEEccCCcCccc
Q 041562 230 NHISGSIKNGIVNLTSLRILELYSNSLTGLIPRD-IGKLTNLESLVLHNNSLSGSLPSSLKNCI-NLTLLNLQSNFFEGD 307 (653)
Q Consensus 230 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~ 307 (653)
|.+.+.+|..++++++|++|++++|++++.+|.. ++.+++|++|++++|++++.+|..+.+++ +|++|++++|.+++.
T Consensus 304 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~ 383 (768)
T 3rgz_A 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383 (768)
T ss_dssp SEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE
T ss_pred CcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC
Confidence 9888888888889999999999999888777765 88888999999999988888888888887 889999999888877
Q ss_pred cChhhccC--CCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchh
Q 041562 308 ISVFNFST--LLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIR 385 (653)
Q Consensus 308 i~~~~~~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 385 (653)
++. .+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.++... ..
T Consensus 384 ~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~ 460 (768)
T 3rgz_A 384 ILP-NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI--PQ 460 (768)
T ss_dssp CCT-TTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC--CG
T ss_pred cCh-hhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC--CH
Confidence 764 4444 778888888888888888888888888888888888888888888888888888888888887422 13
Q ss_pred hccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhc
Q 041562 386 ILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLG 465 (653)
Q Consensus 386 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 465 (653)
.+..+++|++|++++|.+.+.+|... ..+++|++|++++|++++.+|.+++.+++|++|++++|++.+.+|..+.
T Consensus 461 ~~~~l~~L~~L~L~~N~l~~~~p~~l-----~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 461 ELMYVKTLETLILDFNDLTGEIPSGL-----SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGG-----GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred HHcCCCCceEEEecCCcccCcCCHHH-----hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 46678888888888888888877644 3678888888888888888888888888888888888888888888888
Q ss_pred CCCCCCEEEccCCcCcccCCccccCCCCCCcccccc--------------------------------------------
Q 041562 466 NMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKN-------------------------------------------- 501 (653)
Q Consensus 466 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~-------------------------------------------- 501 (653)
.+++|++|++++|+++|.+|..+.....+..+....
T Consensus 536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 615 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615 (768)
T ss_dssp GCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred CCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence 888888888888888888887665543322211100
Q ss_pred --cc--cccccccccccCCcccccccc--------------ccccccccc-ceeeeCChHHHhHHhccCeeecCCccCcc
Q 041562 502 --KA--NESYLEFSLFKGSNNFIGEYK--------------KILTFHEQY-TWKTTASAAVSLLRLLLHMLDLSHNNFSG 562 (653)
Q Consensus 502 --~~--~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~-~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~ 562 (653)
+. ......+........+....+ .+..+..+. .++|.||..++.++ .|++|||++|+++|
T Consensus 616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~-~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR-GLNILDLSSNKLDG 694 (768)
T ss_dssp TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCEE
T ss_pred ccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC-CCCEEECCCCcccC
Confidence 00 000000000011111111111 112222222 27899999999999 99999999999999
Q ss_pred ccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCc-ccc
Q 041562 563 NIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENN-LRG 610 (653)
Q Consensus 563 ~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~-l~g 610 (653)
.+|..++++++|++||||+|+++|.||+. ..+.++....+.+|+ +.|
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred cCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 99999999999999999999999999975 456667777788886 554
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.8e-59 Score=521.62 Aligned_cols=473 Identities=21% Similarity=0.295 Sum_probs=315.4
Q ss_pred CCHHhHHHHHHhhhcCCCCC-----------CCCCCCCCCccc---cceEeCCCCCEEEEEcCCCCcceeccccccCCCC
Q 041562 34 CNQIDQDSLLSLGFNISSPG-----------LNWSSSTDCCLW---EGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTH 99 (653)
Q Consensus 34 ~~~~~~~~ll~~k~~~~~~~-----------~~W~~~~~~c~w---~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~ 99 (653)
....|+.||.+++.++.++. .+|+.+.+||.| .||+|+..|||++|+|++++++|.+|+++++|++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~ 106 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTE 106 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCcc
Confidence 34579999999999876542 379888999999 9999998899999999999999999999999999
Q ss_pred CCEEECCCCCC------CC------CCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEcc-------------
Q 041562 100 LSHLNLSHNRL------SG------EFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVS------------- 154 (653)
Q Consensus 100 L~~L~Ls~n~~------~~------~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls------------- 154 (653)
|++|+|++|.+ .| .+|... ...|+ +++++|.+.+.+|..+...+..+..+++.
T Consensus 107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~-~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 184 (636)
T 4eco_A 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQ-KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184 (636)
T ss_dssp CCEEESCCGGGGGTCCSBSTTSBCTTCCHHH-HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred ceEEECcCCccccCCccccccccccCchHHH-HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence 99999999976 22 233222 25566 77777877777776544322222222222
Q ss_pred -------CCcCcccCChhhhhcCCCCCCEEEccCCcCccC-----------------CCccCC--CCCCCCEEEcccCCC
Q 041562 155 -------NNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGP-----------------VPLGLG--SCSRLKTFRAGFNYL 208 (653)
Q Consensus 155 -------~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~~~~~~--~l~~L~~L~L~~n~l 208 (653)
+|.+++ +|..+. ++++|++|++++|.+++. +|..++ ++++|++|++++|.+
T Consensus 185 ~l~l~~~~n~l~~-ip~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l 261 (636)
T 4eco_A 185 DTQIGQLSNNITF-VSKAVM--RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN 261 (636)
T ss_dssp TTTTTCCSCEEEE-ECGGGG--GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT
T ss_pred hhhhccccCCCcc-CCHHHh--cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC
Confidence 455666 555433 566666666666666664 666666 666666666666666
Q ss_pred CCCccccccCCCCCCEEeccCCc-Ccc-cccccccCC------CCCcEEEcccCcCCcccCc--cccCCCCCCeEEeecC
Q 041562 209 TGSLPDDIYTATSLEQLSLSFNH-ISG-SIKNGIVNL------TSLRILELYSNSLTGLIPR--DIGKLTNLESLVLHNN 278 (653)
Q Consensus 209 ~~~~p~~l~~l~~L~~L~Ls~n~-i~~-~~~~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n 278 (653)
.+.+|..++++++|++|++++|. +++ .+|..++++ ++|++|++++|+++ .+|. .++++++|++|++++|
T Consensus 262 ~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 262 LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 66666666666666666666666 665 566666554 66666666666666 5565 6666666666666666
Q ss_pred cCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCC-cCEEEccCCcccccCCccCcCCC--CCCeEEccCccccc
Q 041562 279 SLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLK-LRVLDLGSNLFTGSLPITLNSCK--SLTAVNLARNQLEG 355 (653)
Q Consensus 279 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~ 355 (653)
+++|.+| .+..+++|++|++++|.++ .+|. .+..+++ |++|++++|.++ .+|..+..++ +|++|++++|.+++
T Consensus 341 ~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 341 QLEGKLP-AFGSEIKLASLNLAYNQIT-EIPA-NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp CCEEECC-CCEEEEEESEEECCSSEEE-ECCT-TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cCccchh-hhCCCCCCCEEECCCCccc-cccH-hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 6666666 6666666666666666666 5553 4566666 666666666666 5565555443 66666666666666
Q ss_pred cCchhhc-------CCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEcc
Q 041562 356 QISPGIV-------ALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLA 428 (653)
Q Consensus 356 ~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~ 428 (653)
..|..+. .+++|++|++++|.++.++.. .+..+ ++|++|+++
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~--~~~~l-----------------------------~~L~~L~Ls 465 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE--LFSTG-----------------------------SPLSSINLM 465 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH--HHHTT-----------------------------CCCSEEECC
T ss_pred cchhhhcccccccccCCCCCEEECcCCccCcCCHH--HHccC-----------------------------CCCCEEECC
Confidence 6665555 455666666666665544432 12233 445555555
Q ss_pred CCcCcccchhhh--------cCCccCCeeeCcCCcCccCCchhhc--CCCCCCEEEccCCcCcccCCccccCCCCCCccc
Q 041562 429 ECKLKGQVPSWI--------GKLKKLQVLDLSFNQLTGSVPRFLG--NMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQ 498 (653)
Q Consensus 429 ~n~l~~~~p~~l--------~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 498 (653)
+|+++ .+|... .++++|++|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..++
T Consensus 466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~------ 536 (636)
T 4eco_A 466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSS------ 536 (636)
T ss_dssp SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCS------
T ss_pred CCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCC------
Confidence 55544 333221 12236667777777666 5555554 66677777777776665 555554443
Q ss_pred ccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeec------CCccCccccccccccCC
Q 041562 499 DKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDL------SHNNFSGNIPDQISQLT 572 (653)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~L------s~N~l~~~~p~~l~~l~ 572 (653)
.|+.|+| ++|++.+.+|..+++++
T Consensus 537 --------------------------------------------------~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 537 --------------------------------------------------TLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp --------------------------------------------------SCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred --------------------------------------------------CCCEEECCCCcccccCcccccChHHHhcCC
Confidence 4555555 56778888888888888
Q ss_pred CCCeEeCCCCeeeeecCcccccCCCCCeeecCCCccc
Q 041562 573 NLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR 609 (653)
Q Consensus 573 ~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 609 (653)
+|++|||++|++ +.+|..+. ++|++|++++|++.
T Consensus 567 ~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 567 SLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp SCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred CCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 888888888888 57887765 78888888888776
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.5e-56 Score=502.96 Aligned_cols=552 Identities=20% Similarity=0.202 Sum_probs=396.1
Q ss_pred CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562 74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152 (653)
Q Consensus 74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~ 152 (653)
.++++|+|+++.+++..+..|+++++|++|+|++|.+++..|..++. ++|++|+|++|.++ .+|...+..+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEE
Confidence 57999999999999988889999999999999999999998988877 99999999999999 78887778899999999
Q ss_pred ccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCcccccc--CCCCCCEEeccCC
Q 041562 153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIY--TATSLEQLSLSFN 230 (653)
Q Consensus 153 Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n 230 (653)
+++|.+++..+..+. .+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 104 L~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFV--KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCSSCCCCCCSCTTT--TCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CCCCccCccChhHcc--ccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 999999987766554 799999999999999999899999999999999999999977766554 5689999999999
Q ss_pred cCcccccccccCC---------------------------CCCcEEEcccCcCCcccCccccCCCC--CCeEEeecCcCc
Q 041562 231 HISGSIKNGIVNL---------------------------TSLRILELYSNSLTGLIPRDIGKLTN--LESLVLHNNSLS 281 (653)
Q Consensus 231 ~i~~~~~~~l~~l---------------------------~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~ 281 (653)
.+.+..|..+..+ ++|++|++++|.+++..|..+..++. |++|++++|.++
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 9987777666543 45777777788887777777777644 888888888888
Q ss_pred ccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccc-----cCCc----cCcCCCCCCeEEccCcc
Q 041562 282 GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG-----SLPI----TLNSCKSLTAVNLARNQ 352 (653)
Q Consensus 282 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~-----~~~~----~l~~l~~L~~L~L~~n~ 352 (653)
+..|..++.+++|++|++++|.+.+..+ ..+..+++|++|++++|...+ .+|. .+..+++|++|++++|.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp EECTTTTTTCTTCCEEECCSCCBSEECT-TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccCcccccCcccccEeeCCCCccCccCh-hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 7777778888888888888888875544 367777788888887765442 2222 56677788888888888
Q ss_pred ccccCchhhcCCCCCCEEECCCCCCC--CCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCC
Q 041562 353 LEGQISPGIVALKSLSFLSLSNNSLT--NITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAEC 430 (653)
Q Consensus 353 l~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n 430 (653)
+.+..+..+..+++|++|++++|.+. .++.........++|+.|++++|.+.+..+..+ ..+++|++|++++|
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-----SWLGHLEVLDLGLN 415 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-----TTCTTCCEEECCSS
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-----hCCCCCCEEeCCCC
Confidence 87777777777777777777777543 111111001122456666666666655544322 34566666666666
Q ss_pred cCcccch-hhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCc--ccCCccccCCCCCCcccccccccccc
Q 041562 431 KLKGQVP-SWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS--GEFPKEFCRLPALTPEQDKNKANESY 507 (653)
Q Consensus 431 ~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~l~~~~~~~~~~ 507 (653)
.+++.+| ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+. +.+|..|..+++|+.++++++.....
T Consensus 416 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i 495 (680)
T 1ziw_A 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495 (680)
T ss_dssp CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC
T ss_pred cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC
Confidence 6655444 45556666666666666665555555555666666666666554 34555555566666555554432211
Q ss_pred cc--cccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeee
Q 041562 508 LE--FSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLS 585 (653)
Q Consensus 508 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~ 585 (653)
.. +........+....+++..+.... +.+..+..++.++ .|++|+|++|+++...+..|+.+++|++|||++|+++
T Consensus 496 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 496 NDDMLEGLEKLEILDLQHNNLARLWKHA-NPGGPIYFLKGLS-HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCGGGGSTT-STTSCCCTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ChhhhccccccCEEeCCCCCccccchhh-ccCCcchhhcCCC-CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC
Confidence 11 111111122222223322221100 0011112356666 8999999999999655567999999999999999999
Q ss_pred eecCcccccCCCCCeeecCCCcccccCCCC-C-CCCCcCCCccCCCCCCCCCC
Q 041562 586 GEIPVSLKRLHFLSAFNVAENNLRGSIPSG-G-QFDTFPSSSFRGNPDLCGAI 636 (653)
Q Consensus 586 ~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~-~~~~~~~~~~~gn~~lc~~~ 636 (653)
+..+..+..+++|++|++++|++++..|.. + .+.++....+.|||..|..+
T Consensus 574 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred cCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 666666789999999999999999766643 1 46778888899999999875
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.7e-56 Score=505.21 Aligned_cols=432 Identities=22% Similarity=0.255 Sum_probs=275.7
Q ss_pred CCcCCHHhHHHHHHhhhcCCCCCCCCCCCC-----CC--ccc------------cceEeCCCCCEEEEEcCCCCcceecc
Q 041562 31 CQACNQIDQDSLLSLGFNISSPGLNWSSST-----DC--CLW------------EGIKCDANGRVSHLWLPWKGLTGTIS 91 (653)
Q Consensus 31 ~~~~~~~~~~~ll~~k~~~~~~~~~W~~~~-----~~--c~w------------~gv~c~~~~~v~~L~L~~~~l~g~~~ 91 (653)
.+++..+|++||++||+++.++ +|+.+. +| |.| .||+|+..+||++|+|+++++.|.+|
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~--~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip 340 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK--NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP 340 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG--GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEEC
T ss_pred ccccchHHHHHHHHHHHHcCCC--CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCc
Confidence 3445578999999999999776 797543 56 999 99999988999999999999999999
Q ss_pred ccccCCCCCCEEEC-CCCCCCCCCCccccCC--C--------cCE------EE-ccCCCCCCCCchHHH----------h
Q 041562 92 LSIGNLTHLSHLNL-SHNRLSGEFPSSLSSN--Y--------IKI------ID-LSSNHFQGKIPSTIF----------R 143 (653)
Q Consensus 92 ~~l~~l~~L~~L~L-s~n~~~~~~p~~~~~~--~--------L~~------L~-Ls~n~l~~~ip~~~~----------~ 143 (653)
++|++|++|++|+| ++|.+.|..|...... . ++. ++ .....+.+.++..+. .
T Consensus 341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~ 420 (876)
T 4ecn_A 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420 (876)
T ss_dssp GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence 99999999999999 8898877644221000 0 000 00 000000000000000 0
Q ss_pred cCCCCcEEEccC--CcCcccCChhhhhcCCCCCCEEEccCCcCcc-----------------CCCccCC--CCCCCCEEE
Q 041562 144 LTQNLITFNVSN--NSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-----------------PVPLGLG--SCSRLKTFR 202 (653)
Q Consensus 144 ~l~~L~~L~Ls~--n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------~~~~~~~--~l~~L~~L~ 202 (653)
....++.+.+.. |.+++ +|..+. ++++|++|+|++|.+++ .+|..++ ++++|++|+
T Consensus 421 ~~l~l~~l~l~~~~N~L~~-IP~~l~--~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 421 SRISLKDTQIGNLTNRITF-ISKAIQ--RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCTTTTTCCSCEEEE-ECGGGG--GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred cccchhhceeccccCcccc-hhHHHh--cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 111222223322 55555 444433 46666666666666665 3777766 777777777
Q ss_pred cccCCCCCCccccccCCCCCCEEeccCCc-Ccc-cccccccCCC-------CCcEEEcccCcCCcccCc--cccCCCCCC
Q 041562 203 AGFNYLTGSLPDDIYTATSLEQLSLSFNH-ISG-SIKNGIVNLT-------SLRILELYSNSLTGLIPR--DIGKLTNLE 271 (653)
Q Consensus 203 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-i~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~p~--~l~~l~~L~ 271 (653)
+++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+++++ +|++|++++|+++ .+|. .++++++|+
T Consensus 498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG 576 (876)
T ss_dssp EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence 77777777777777777778888887776 776 6676555544 7888888888777 6676 777777888
Q ss_pred eEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCC-cCEEEccCCcccccCCccCcCCCC--CCeEEc
Q 041562 272 SLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLK-LRVLDLGSNLFTGSLPITLNSCKS--LTAVNL 348 (653)
Q Consensus 272 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~-L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~L 348 (653)
.|+|++|.++ .+| .+..+++|+.|++++|.+. .+|. .+..+++ |+.|++++|.++ .+|..+..++. |+.|++
T Consensus 577 ~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~L 651 (876)
T 4ecn_A 577 LLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPE-DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF 651 (876)
T ss_dssp EEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCT-TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEEC
T ss_pred EEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchH-HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEEC
Confidence 8888888777 666 6777777888888888777 6664 5677777 888888888777 66766666543 778888
Q ss_pred cCccccccCchh---hc--CCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccC---CCCCC
Q 041562 349 ARNQLEGQISPG---IV--ALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTS---ANGFK 420 (653)
Q Consensus 349 ~~n~l~~~~~~~---l~--~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~---~~~~~ 420 (653)
++|.+.+.+|.. +. ..++|+.|++++|.++.++.. .+..+++|+.|++++|.+. .+|....... ..+++
T Consensus 652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~--~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE--LFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHH--HHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGG
T ss_pred cCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHH--HHccCCCCCEEECCCCcCC-ccChHHhccccccccccC
Confidence 888777655432 22 334778888888887765542 2345566666666666655 3333211100 11223
Q ss_pred CcCEEEccCCcCcccchhhhc--CCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCC
Q 041562 421 NLQVLGLAECKLKGQVPSWIG--KLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478 (653)
Q Consensus 421 ~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 478 (653)
+|++|+|++|+++ .+|..+. .+++|+.|+|++|++.+ +|..+..+++|+.|+|++|
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCC
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCC
Confidence 5555555555555 4454444 55555555555555554 4444555555555555543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.2e-55 Score=487.42 Aligned_cols=490 Identities=19% Similarity=0.188 Sum_probs=283.9
Q ss_pred CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562 74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152 (653)
Q Consensus 74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~ 152 (653)
.+++.|+|+++.+++..+.+|+++++|++|+|++|.+.+..|..|.. ++|++|+|++|.+++..|. .+..+++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEee
Confidence 46888999999998888888999999999999999988888888877 8899999999988854444 456788899999
Q ss_pred ccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCC--EEeccCC
Q 041562 153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLE--QLSLSFN 230 (653)
Q Consensus 153 Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~Ls~n 230 (653)
+++|.+++..+..+. .+++|++|++++|.+++.....+..+++|++|++++|.+++..|..+..+++|+ +|++++|
T Consensus 112 L~~n~i~~l~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 112 FIQTGISSIDFIPLH--NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CTTSCCSCGGGSCCT--TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred ccccCcccCCcchhc--cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 999988886554433 688899999999988875444555588899999999988877788888888888 8888888
Q ss_pred cCcccccccccCCCCCcEEEcccCcCCcccCccccCCC-------------------------------CCCeEEeecCc
Q 041562 231 HISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLT-------------------------------NLESLVLHNNS 279 (653)
Q Consensus 231 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-------------------------------~L~~L~L~~n~ 279 (653)
.+.+..|..+. ..+|++|++++|.. ++..+..+. +|+.|++++|.
T Consensus 190 ~l~~~~~~~~~-~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~ 265 (606)
T 3t6q_A 190 DIAGIEPGAFD-SAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265 (606)
T ss_dssp CCCEECTTTTT-TCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC
T ss_pred ccCccChhHhh-hccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc
Confidence 88876665554 35788888877751 122222222 34444444444
Q ss_pred CcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCch
Q 041562 280 LSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISP 359 (653)
Q Consensus 280 l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 359 (653)
+++..+..+..+++|++|++++|.++ .+|. .+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++.
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 343 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT 343 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTSCCS-CCCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred cCccCHHHhccccCCCEEeccCCccC-CCCh-hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence 44444444444444444444444444 3332 344444444444444444444444444444444444444444433332
Q ss_pred h-hcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchh
Q 041562 360 G-IVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPS 438 (653)
Q Consensus 360 ~-l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 438 (653)
. +..+++|++|++++|.++.+......+..+++|++|++++|.+.+..+..+ ..+++|++|++++|++++..+.
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~ 418 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF-----KECPQLELLDLAFTRLKVKDAQ 418 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT-----TTCTTCSEEECTTCCEECCTTC
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh-----cCCccCCeEECCCCcCCCcccc
Confidence 2 444444444444444444332112233444444444444444443333221 2344444444444444433322
Q ss_pred -hhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCccc---CCccccCCCCCCccccccccccccccccccc
Q 041562 439 -WIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGE---FPKEFCRLPALTPEQDKNKANESYLEFSLFK 514 (653)
Q Consensus 439 -~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 514 (653)
.+..+++|++|++++|++.+..|..+..+++|++|++++|++++. .+..+..++
T Consensus 419 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~---------------------- 476 (606)
T 3t6q_A 419 SPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG---------------------- 476 (606)
T ss_dssp CTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT----------------------
T ss_pred hhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC----------------------
Confidence 244444444444444444444444444444444444444444431 112233333
Q ss_pred CCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCccccc
Q 041562 515 GSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKR 594 (653)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~ 594 (653)
+|++|+|++|.+++..|..|+.+++|++|||++|++++.+|..+..
T Consensus 477 ----------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 522 (606)
T 3t6q_A 477 ----------------------------------RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522 (606)
T ss_dssp ----------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT
T ss_pred ----------------------------------CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc
Confidence 5555555555555555555555555555555555555555555555
Q ss_pred CCCCCeeecCCCcccccCCCC-CCCCCcCCCccCCCCCCCC
Q 041562 595 LHFLSAFNVAENNLRGSIPSG-GQFDTFPSSSFRGNPDLCG 634 (653)
Q Consensus 595 l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~~lc~ 634 (653)
++.| +|++++|++++.+|.. ..+..+....+.|||..|.
T Consensus 523 l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 523 LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred cccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 5555 5555555555444432 2233444455555555554
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.6e-53 Score=477.33 Aligned_cols=488 Identities=20% Similarity=0.221 Sum_probs=315.9
Q ss_pred CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562 74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152 (653)
Q Consensus 74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~ 152 (653)
.++++|+|+++.+++..+..|.++++|++|+|++|.+++..|..|.. ++|++|+|++|.+++..|. .+..+++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCEEE
Confidence 57899999999999888889999999999999999999888888876 8999999999999854454 456799999999
Q ss_pred ccCCcCcccCChhhhhcCCCCCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCC----EEec
Q 041562 153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLE----QLSL 227 (653)
Q Consensus 153 Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L 227 (653)
+++|.+++..+..+. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++..|..+..+++|+ +|++
T Consensus 111 L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 111 AVETKLASLESFPIG--QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp CTTSCCCCSSSSCCT--TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred ccCCccccccccccC--CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 999999887765543 78999999999999886 5688999999999999999999987777777666554 8999
Q ss_pred cCCcCcccccccccCCCCCcEEEcccCcCC-cccCccccCCCCCCeEEee------------------------------
Q 041562 228 SFNHISGSIKNGIVNLTSLRILELYSNSLT-GLIPRDIGKLTNLESLVLH------------------------------ 276 (653)
Q Consensus 228 s~n~i~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~------------------------------ 276 (653)
++|.+.+..+..+.. .+|++|++++|.+. +..|..++++++|+.+++.
T Consensus 189 ~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 189 SLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp TTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred cCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 999998655555544 48999999999886 3455666777777766663
Q ss_pred ---cCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccc
Q 041562 277 ---NNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL 353 (653)
Q Consensus 277 ---~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 353 (653)
.+.+.+.+|. +..+++|+.|++++|.+. .++ .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|..
T Consensus 268 l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 268 LTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKG 340 (606)
T ss_dssp ECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSS
T ss_pred ccccccccccccc-cccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcC
Confidence 3344444444 555566666666666654 344 455556666666666666 3455 23 556666666666644
Q ss_pred cccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCc
Q 041562 354 EGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLK 433 (653)
Q Consensus 354 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 433 (653)
.+.. .+..+++|++|++++|.++.+......+..+++|++|++++|.+.+. |. .+..+++|++|++++|++.
T Consensus 341 ~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~-----~~~~l~~L~~L~l~~n~l~ 412 (606)
T 3vq2_A 341 SISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SA-----NFMGLEELQHLDFQHSTLK 412 (606)
T ss_dssp CEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CC-----CCTTCTTCCEEECTTSEEE
T ss_pred ccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hh-----hccCCCCCCeeECCCCccC
Confidence 3332 34455666666666665554322223445556666666666655432 11 1234556666666666665
Q ss_pred ccch-hhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcc-cCCccccCCCCCCcccccccccccccccc
Q 041562 434 GQVP-SWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISG-EFPKEFCRLPALTPEQDKNKANESYLEFS 511 (653)
Q Consensus 434 ~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~l~~~~~~~~~~~~~~ 511 (653)
+..| ..+..+++|++|++++|++.+..|..+..+++|++|++++|++++ .+|..+..+++|+.++++++.
T Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-------- 484 (606)
T 3vq2_A 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ-------- 484 (606)
T ss_dssp STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC--------
T ss_pred CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCc--------
Confidence 5544 455556666666666666665555556666666666666666655 245555555555544443321
Q ss_pred cccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcc
Q 041562 512 LFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVS 591 (653)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~ 591 (653)
+.+..|..++.++ .|++|+|++|++++.+|..|+++++|++|||++|+++ .+|..
T Consensus 485 -----------------------l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~ 539 (606)
T 3vq2_A 485 -----------------------LEQISWGVFDTLH-RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI 539 (606)
T ss_dssp -----------------------CCEECTTTTTTCT-TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred -----------------------CCccChhhhcccc-cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence 1222233333344 5555555555555555555555555555555555555 44444
Q ss_pred cccCC-CCCeeecCCCcccccCC
Q 041562 592 LKRLH-FLSAFNVAENNLRGSIP 613 (653)
Q Consensus 592 l~~l~-~L~~L~ls~N~l~g~iP 613 (653)
+..++ +|++|++++|++.+..|
T Consensus 540 ~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 540 LQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp GGGSCTTCCEEECCSCCCCCSST
T ss_pred HhhhcccCcEEEccCCCcccCCc
Confidence 55554 35555555555554443
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-53 Score=488.40 Aligned_cols=524 Identities=19% Similarity=0.194 Sum_probs=405.9
Q ss_pred ccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCC-CccccC-CCcCEEEccCCCCCCCCchH
Q 041562 63 CLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEF-PSSLSS-NYIKIIDLSSNHFQGKIPST 140 (653)
Q Consensus 63 c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~-~~L~~L~Ls~n~l~~~ip~~ 140 (653)
|.|..|.+ -..+++.|+|++|.+++..+..|.++++|++|||++|.+.+.+ |..+.. ++|++|+|++|.+.+..|.
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~- 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD- 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-
Confidence 56777777 5678999999999999999999999999999999999777666 667777 9999999999999955555
Q ss_pred HHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCC-ccCCCCCCCCEEEcccCCCCCCccccccCC
Q 041562 141 IFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP-LGLGSCSRLKTFRAGFNYLTGSLPDDIYTA 219 (653)
Q Consensus 141 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 219 (653)
.+..+++|++|+|++|.+++.++.......+++|++|++++|.+++..+ ..++++++|++|++++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 4667999999999999999876665444589999999999999987655 579999999999999999998888888877
Q ss_pred --CCCCEEeccCCcCcccccccccCCCC------CcEEEcccCcCCcccCccccCC---CCCCeEEeecC---------c
Q 041562 220 --TSLEQLSLSFNHISGSIKNGIVNLTS------LRILELYSNSLTGLIPRDIGKL---TNLESLVLHNN---------S 279 (653)
Q Consensus 220 --~~L~~L~Ls~n~i~~~~~~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n---------~ 279 (653)
++|+.|++++|.+.+..+..++.+.+ |++|++++|.+++..+..+... .+++.+.++.+ .
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 89999999999999888887777665 9999999999988777666543 56777776633 2
Q ss_pred CcccCCccccCC--CCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccC
Q 041562 280 LSGSLPSSLKNC--INLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQI 357 (653)
Q Consensus 280 l~~~~p~~l~~l--~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 357 (653)
+.+..+..+..+ ++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS-RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECS-CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccCh-hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence 222223334443 678888888888875444 46778888888888888888777778888888888888888888777
Q ss_pred chhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccch
Q 041562 358 SPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVP 437 (653)
Q Consensus 358 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 437 (653)
+..+..+++|++|++++|.++.++. ..+..+++|+.|++++|.+.+. ..+++|+.|++++|+++ .+|
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~--~~~~~l~~L~~L~Ls~N~l~~i----------~~~~~L~~L~l~~N~l~-~l~ 397 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQD--QTFKFLEKLQTLDLRDNALTTI----------HFIPSIPDIFLSGNKLV-TLP 397 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCS--SCSCSCCCCCEEEEETCCSCCC----------SSCCSCSEEEEESCCCC-CCC
T ss_pred HHHhcCCCCCCEEECCCCCCCccCh--hhhcCCCCCCEEECCCCCCCcc----------cCCCCcchhccCCCCcc-ccc
Confidence 7788888888888888888876654 2467778888888888877632 12577888888888887 445
Q ss_pred hhhcCCccCCeeeCcCCcCccCC-chhhcCCCCCCEEEccCCcCcccCCc-cccCCCCCCcccccccccccccccccccC
Q 041562 438 SWIGKLKKLQVLDLSFNQLTGSV-PRFLGNMSSLFHIDFSNNLISGEFPK-EFCRLPALTPEQDKNKANESYLEFSLFKG 515 (653)
Q Consensus 438 ~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 515 (653)
.. ..+++.|++++|++.+.. +..+..+++|++|++++|++++..+. .+..+++|+.++++++.......
T Consensus 398 ~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~------ 468 (844)
T 3j0a_A 398 KI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE------ 468 (844)
T ss_dssp CC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC------
T ss_pred cc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc------
Confidence 43 456788888888887542 23456788888888888888765443 34556777777765543221100
Q ss_pred CcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccC
Q 041562 516 SNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRL 595 (653)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l 595 (653)
.+..+..+..++ .|+.|+|++|.+++..|..|..+++|++|||++|++++..|..+.
T Consensus 469 --------------------~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-- 525 (844)
T 3j0a_A 469 --------------------TELCWDVFEGLS-HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-- 525 (844)
T ss_dssp --------------------SCCCSSCSSCBC-CEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--
T ss_pred --------------------cccchhhhcCcc-cccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--
Confidence 011222333444 899999999999999999999999999999999999976666655
Q ss_pred CCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCCCC
Q 041562 596 HFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAI 636 (653)
Q Consensus 596 ~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~ 636 (653)
++|++|++++|+++|.+|.. |..+....+.|||..|..+
T Consensus 526 ~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 526 ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 89999999999999988854 6778888899999999543
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.5e-52 Score=472.79 Aligned_cols=531 Identities=21% Similarity=0.220 Sum_probs=424.8
Q ss_pred CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562 74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152 (653)
Q Consensus 74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~ 152 (653)
.+++.|+|+++.+++..|..++++++|++|+|++|.+++..+..|+. ++|++|+|++|.++ .+|+..+..+++|++|+
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEE
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEE
Confidence 47899999999999888888999999999999999998666656766 89999999999998 56655567799999999
Q ss_pred ccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCC--CCCCCCEEEcccCCCCCCccccccCC-----------
Q 041562 153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLG--SCSRLKTFRAGFNYLTGSLPDDIYTA----------- 219 (653)
Q Consensus 153 Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~l----------- 219 (653)
+++|.+++..+..+. .+++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..+..+
T Consensus 128 Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~ 205 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQV--QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV 205 (680)
T ss_dssp CCSSCCSCCCCCSSS--CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTC
T ss_pred CCCCcccccCchhhc--ccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccc
Confidence 999999887765543 688999999999998876665543 56889999999999887777655433
Q ss_pred ----------------CCCCEEeccCCcCcccccccccCCCC--CcEEEcccCcCCcccCccccCCCCCCeEEeecCcCc
Q 041562 220 ----------------TSLEQLSLSFNHISGSIKNGIVNLTS--LRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLS 281 (653)
Q Consensus 220 ----------------~~L~~L~Ls~n~i~~~~~~~l~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 281 (653)
++|++|++++|.+.+..|..+..++. |++|++++|++++..|..++.+++|++|++++|.+.
T Consensus 206 ~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 206 QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBS
T ss_pred ccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccC
Confidence 57888899999999888888888765 999999999999888889999999999999999999
Q ss_pred ccCCccccCCCCCcEEEccCCcCccc--------cChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccc
Q 041562 282 GSLPSSLKNCINLTLLNLQSNFFEGD--------ISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL 353 (653)
Q Consensus 282 ~~~p~~l~~l~~L~~L~L~~n~l~~~--------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 353 (653)
+..|..+.++++|++|++++|...+. +....+..+++|++|++++|.+++..+..+.++++|++|++++|.+
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365 (680)
T ss_dssp EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence 99999999999999999998765542 2223677899999999999999988888899999999999999975
Q ss_pred ccc--CchhhcC--CCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccC
Q 041562 354 EGQ--ISPGIVA--LKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAE 429 (653)
Q Consensus 354 ~~~--~~~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 429 (653)
... ....+.. .++|+.|++++|+++.+.. ..+..+++|+.|++++|.+.+.++.. .+.++++|++|++++
T Consensus 366 ~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~----~~~~l~~L~~L~Ls~ 439 (680)
T 1ziw_A 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIES--DAFSWLGHLEVLDLGLNEIGQELTGQ----EWRGLENIFEIYLSY 439 (680)
T ss_dssp CCCEECTTTTGGGTTSCCCEEECTTSCCCEECT--TTTTTCTTCCEEECCSSCCEEECCSG----GGTTCTTCCEEECCS
T ss_pred hhhhcchhhhcccccCcCceEECCCCCCCeECh--hhhhCCCCCCEEeCCCCcCccccCcc----cccCcccccEEecCC
Confidence 432 2222332 3689999999999886543 45778899999999999998776642 235788999999999
Q ss_pred CcCcccchhhhcCCccCCeeeCcCCcCc--cCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccc
Q 041562 430 CKLKGQVPSWIGKLKKLQVLDLSFNQLT--GSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESY 507 (653)
Q Consensus 430 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~ 507 (653)
|++.+..+..+..+++|+.|++++|.+. +.+|..+..+++|++|++++|++++..+..|..+++|+.++++++.....
T Consensus 440 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp CSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred CCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence 9998888888999999999999999886 56788899999999999999999988888899999999999887654332
Q ss_pred cccccccCCcccccccccccccccccceeeeCCh-HHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeee
Q 041562 508 LEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASA-AVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSG 586 (653)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~-~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 586 (653)
..................+..+....+--..+|. .++.++ .|+.|+|++|++++..+..|..+++|++|+|++|++++
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF-ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred chhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccccc-CcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 1100000000000111112222222221224554 467788 99999999999998777888999999999999999998
Q ss_pred ecCcccc-cCCCCCeeecCCCcccccCCC
Q 041562 587 EIPVSLK-RLHFLSAFNVAENNLRGSIPS 614 (653)
Q Consensus 587 ~ip~~l~-~l~~L~~L~ls~N~l~g~iP~ 614 (653)
..|..+. .+++|+++++++|++.+.-+.
T Consensus 599 ~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 599 VEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred cChhHhcccccccCEEEccCCCcccCCcc
Confidence 8777777 789999999999999987764
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.4e-51 Score=459.69 Aligned_cols=473 Identities=19% Similarity=0.196 Sum_probs=408.8
Q ss_pred CCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEE
Q 041562 73 NGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITF 151 (653)
Q Consensus 73 ~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L 151 (653)
-.+++.|+|+++.+++..|.+|+++++|++|+|++|.+++..|..++. ++|++|++++|.++ .++...+..+++|++|
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESL 134 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCcchhccCCcccEE
Confidence 357999999999999999999999999999999999999988988887 99999999999999 4544446779999999
Q ss_pred EccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCC--EEEcccCCCCCCccccccCCCCCCEEeccC
Q 041562 152 NVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLK--TFRAGFNYLTGSLPDDIYTATSLEQLSLSF 229 (653)
Q Consensus 152 ~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~--~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 229 (653)
++++|.+++.....+. .+++|++|++++|.+++..+..++.+++|+ .|++++|.+++..|..+ ....|++|++++
T Consensus 135 ~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~ 211 (606)
T 3t6q_A 135 YLGSNHISSIKLPKGF--PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGG 211 (606)
T ss_dssp ECCSSCCCCCCCCTTC--CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT-TTCEEEEEECTT
T ss_pred ECCCCcccccCccccc--CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh-hhccccccccCC
Confidence 9999999985433332 489999999999999988888899999999 99999999997666554 456899999988
Q ss_pred CcCcc--------------------------cccccccCCC--CCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCc
Q 041562 230 NHISG--------------------------SIKNGIVNLT--SLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLS 281 (653)
Q Consensus 230 n~i~~--------------------------~~~~~l~~l~--~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 281 (653)
|.... ..+..+..+. +|++|++++|.+++..+..|+.+++|++|++++|.++
T Consensus 212 ~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 291 (606)
T 3t6q_A 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291 (606)
T ss_dssp CSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS
T ss_pred chhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC
Confidence 75110 1111222222 7899999999999888888999999999999999998
Q ss_pred ccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCc-cCcCCCCCCeEEccCccccccC--c
Q 041562 282 GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPI-TLNSCKSLTAVNLARNQLEGQI--S 358 (653)
Q Consensus 282 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~--~ 358 (653)
.+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. +
T Consensus 292 -~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 369 (606)
T 3t6q_A 292 -ELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369 (606)
T ss_dssp -CCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred -CCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence 788899999999999999999985544 4788999999999999999876665 4889999999999999998765 7
Q ss_pred hhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchh
Q 041562 359 PGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPS 438 (653)
Q Consensus 359 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 438 (653)
..+..+++|++|++++|.++.+.. ..+..+++|+.|++++|.+.+..+.. .+..+++|++|++++|.+++..|.
T Consensus 370 ~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 370 LQLRNLSHLQSLNLSYNEPLSLKT--EAFKECPQLELLDLAFTRLKVKDAQS----PFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp TTTTTCTTCCEEECCSCSCEEECT--TTTTTCTTCSEEECTTCCEECCTTCC----TTTTCTTCCEEECTTCCCBTTCTT
T ss_pred hhcccCCCCCEEECCCCcCCcCCH--HHhcCCccCCeEECCCCcCCCcccch----hhhCcccCCEEECCCCccCCcCHH
Confidence 789999999999999999875532 45778999999999999988766543 235789999999999999988899
Q ss_pred hhcCCccCCeeeCcCCcCccC---CchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccC
Q 041562 439 WIGKLKKLQVLDLSFNQLTGS---VPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKG 515 (653)
Q Consensus 439 ~l~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 515 (653)
.+..+++|++|++++|++.+. .+..+..+++|++|++++|++++..|..|..++
T Consensus 444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~----------------------- 500 (606)
T 3t6q_A 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK----------------------- 500 (606)
T ss_dssp TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCT-----------------------
T ss_pred HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhcccc-----------------------
Confidence 999999999999999999873 336789999999999999999988887776654
Q ss_pred CcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccC
Q 041562 516 SNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRL 595 (653)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l 595 (653)
.|++|+|++|++++.+|..+.+++.| +||+++|++++.+|..+..+
T Consensus 501 ---------------------------------~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l 546 (606)
T 3t6q_A 501 ---------------------------------MMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPIL 546 (606)
T ss_dssp ---------------------------------TCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHH
T ss_pred ---------------------------------CCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccC
Confidence 68899999999999999999999999 99999999999888889999
Q ss_pred CCCCeeecCCCcccccCCC
Q 041562 596 HFLSAFNVAENNLRGSIPS 614 (653)
Q Consensus 596 ~~L~~L~ls~N~l~g~iP~ 614 (653)
++|+++++++|++.+..+.
T Consensus 547 ~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 547 SQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp HTSSEEECTTCCEECSGGG
T ss_pred CCCCEEeCCCCCccccCCc
Confidence 9999999999999987663
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.9e-50 Score=452.33 Aligned_cols=464 Identities=19% Similarity=0.170 Sum_probs=399.2
Q ss_pred CCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEE
Q 041562 73 NGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITF 151 (653)
Q Consensus 73 ~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L 151 (653)
-.++++|+++++.+++..+.+|+++++|++|+|++|.+++..|..++. ++|++|++++|.++ .++...+..+++|++|
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKL 133 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEE
Confidence 357999999999999998999999999999999999999988998887 99999999999998 4554446779999999
Q ss_pred EccCCcCcc-cCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCC----EEEcccCCCCCCccccccCCCCCCEEe
Q 041562 152 NVSNNSFTG-LISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLK----TFRAGFNYLTGSLPDDIYTATSLEQLS 226 (653)
Q Consensus 152 ~Ls~n~l~~-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~ 226 (653)
++++|.+++ .+|..+. ++++|++|++++|.+++..+..++.+++|+ +|++++|.+++..+ ......+|++|+
T Consensus 134 ~L~~n~l~~~~lp~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~ 210 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYFS--NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD-QAFQGIKLHELT 210 (606)
T ss_dssp ECCSSCCCCCCCCGGGG--TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECT-TTTTTCEEEEEE
T ss_pred eCCCCcccceechHhHh--hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCc-ccccCceeeeee
Confidence 999999987 4566554 799999999999999998888888777665 89999999995444 444455999999
Q ss_pred ccCCcCc-ccccccccCCCCCcEEEc---------------------------------ccCcCCcccCccccCCCCCCe
Q 041562 227 LSFNHIS-GSIKNGIVNLTSLRILEL---------------------------------YSNSLTGLIPRDIGKLTNLES 272 (653)
Q Consensus 227 Ls~n~i~-~~~~~~l~~l~~L~~L~L---------------------------------~~n~l~~~~p~~l~~l~~L~~ 272 (653)
+++|.+. +..|..+.++++|+.+++ ..+.+.+.+|. +..+++|+.
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~ 289 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSA 289 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSE
T ss_pred ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCE
Confidence 9999986 456777888888887776 55666777766 888999999
Q ss_pred EEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcc
Q 041562 273 LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQ 352 (653)
Q Consensus 273 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 352 (653)
|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.+ .+..+++|++|++++|.
T Consensus 290 L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp--~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~ 361 (606)
T 3vq2_A 290 MSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP--TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNA 361 (606)
T ss_dssp EEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC--CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSC
T ss_pred EEecCccch-hhh-hccccccCCEEEcccccC-cccc--cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCc
Confidence 999999997 566 799999999999999999 5888 45 8999999999999665544 57789999999999999
Q ss_pred cccc--CchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCC
Q 041562 353 LEGQ--ISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAEC 430 (653)
Q Consensus 353 l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n 430 (653)
+++. .+..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.+.+..+.. .+..+++|++|++++|
T Consensus 362 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQHLDFQHSTLKRVTEFS----AFLSLEKLLYLDISYT 434 (606)
T ss_dssp EEEEEECCHHHHCCSCCCEEECCSCSEEEEC---CCCTTCTTCCEEECTTSEEESTTTTT----TTTTCTTCCEEECTTS
T ss_pred cCCCcchhhhhccCCcccEeECCCCccccch---hhccCCCCCCeeECCCCccCCccChh----hhhccccCCEEECcCC
Confidence 9876 4788999999999999999988766 45778999999999999998776521 2357899999999999
Q ss_pred cCcccchhhhcCCccCCeeeCcCCcCcc-CCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccc
Q 041562 431 KLKGQVPSWIGKLKKLQVLDLSFNQLTG-SVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLE 509 (653)
Q Consensus 431 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~ 509 (653)
.+++..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++++..|..+..+++|+.++++++.
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~------ 508 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN------ 508 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC------
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc------
Confidence 9999899999999999999999999998 478889999999999999999999999999999999999887642
Q ss_pred cccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCC-CCCeEeCCCCeeeeec
Q 041562 510 FSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLT-NLERMDLSKNHLSGEI 588 (653)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~LdLs~N~l~~~i 588 (653)
+.+.+|..++.++ +|++|+|++|+++ .+|..+..++ +|++|++++|++.+..
T Consensus 509 -------------------------l~~~~~~~~~~l~-~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 509 -------------------------LLFLDSSHYNQLY-SLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp -------------------------CSCEEGGGTTTCT-TCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred -------------------------CCCcCHHHccCCC-cCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 3344566667777 9999999999999 6888899997 6999999999998755
Q ss_pred C
Q 041562 589 P 589 (653)
Q Consensus 589 p 589 (653)
+
T Consensus 562 ~ 562 (606)
T 3vq2_A 562 E 562 (606)
T ss_dssp T
T ss_pred c
Confidence 4
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-49 Score=442.10 Aligned_cols=513 Identities=18% Similarity=0.175 Sum_probs=325.0
Q ss_pred CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562 74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152 (653)
Q Consensus 74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~ 152 (653)
.+++.|+++++.+++..+.+|..+++|++|+|++|.+++..+..|.. ++|++|+|++|.++ .+|...+..+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccccc
Confidence 46888888888888887788888888888888888888777777776 88888888888887 45555566788888888
Q ss_pred ccCCcCcccCChhhhhcCCCCCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCccccccCCCCC----CEEec
Q 041562 153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSL----EQLSL 227 (653)
Q Consensus 153 Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L----~~L~L 227 (653)
+++|.+++..+..+ ..+++|++|++++|.+++ .+|..++++++|++|++++|.+++..|..+..+++| ++|++
T Consensus 107 L~~n~l~~l~~~~~--~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSCCCCSTTCSC--TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccCCCccc--cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 88888887655443 268888888888888876 468888888888888888888887767777777777 78888
Q ss_pred cCCcCcccccccccCCCCCcEEEcccCcCCc-ccCccccCCCCCCeEEeecCcCc------ccCCccccCCC--CCcEEE
Q 041562 228 SFNHISGSIKNGIVNLTSLRILELYSNSLTG-LIPRDIGKLTNLESLVLHNNSLS------GSLPSSLKNCI--NLTLLN 298 (653)
Q Consensus 228 s~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~------~~~p~~l~~l~--~L~~L~ 298 (653)
++|.+.+..+..+... +|++|++++|.... .++..+..+++++.+.+....+. ......+..++ .++.++
T Consensus 185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 8888887666666655 78888888774331 22333444444444433321111 00111111111 133444
Q ss_pred ccCC-cCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCC
Q 041562 299 LQSN-FFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSL 377 (653)
Q Consensus 299 L~~n-~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 377 (653)
++++ .+.+.++. .+..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+
T Consensus 264 l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 264 LAYLDYYLDDIID-LFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKG 337 (570)
T ss_dssp EEETTEEESCSTT-TTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBS
T ss_pred hhcchhhhhhchh-hhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcc
Confidence 4444 33333332 4445555555555555555 345555555 5555555555554 3332 3445555555555554
Q ss_pred CCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCc
Q 041562 378 TNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLT 457 (653)
Q Consensus 378 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 457 (653)
..... ...+++|+.|++++|.+.+.... ...+..+++|++|++++|.+.+..+. +..+++|++|++++|++.
T Consensus 338 ~~~~~----~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~ 409 (570)
T 2z63_A 338 GNAFS----EVDLPSLEFLDLSRNGLSFKGCC---SQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLK 409 (570)
T ss_dssp CCBCC----CCBCTTCCEEECCSSCCBEEEEE---EHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEE
T ss_pred ccccc----cccCCCCCEEeCcCCccCccccc---cccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccc
Confidence 42221 13455555555555555432100 00112445566666666655533222 555666666666666655
Q ss_pred cCCc-hhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCccccccccccccccccccee
Q 041562 458 GSVP-RFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWK 536 (653)
Q Consensus 458 ~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 536 (653)
+..+ ..+..+++|++|++++|++++..|..+..+++|+.+++.++... .
T Consensus 410 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------------~ 459 (570)
T 2z63_A 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ------------------------------E 459 (570)
T ss_dssp SCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG------------------------------G
T ss_pred cccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCc------------------------------c
Confidence 4443 34555566666666666665555555555555555555432110 0
Q ss_pred eeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCC
Q 041562 537 TTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGG 616 (653)
Q Consensus 537 g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 616 (653)
+.+|..++.++ .|++|+|++|++++..|..|+.+++|++|++++|++++..|..+..+++|++|++++|+++|.+|...
T Consensus 460 ~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 460 NFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp GEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred ccchhhhhccc-CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 22333344444 89999999999999889999999999999999999998888889999999999999999999998754
Q ss_pred CCCCc---CCCccCCCCCCCCCC
Q 041562 617 QFDTF---PSSSFRGNPDLCGAI 636 (653)
Q Consensus 617 ~~~~~---~~~~~~gn~~lc~~~ 636 (653)
.+..+ ....+.+.+ .|..|
T Consensus 539 ~~~~wl~~~~~~~~~~~-~C~~~ 560 (570)
T 2z63_A 539 YLSRWLNKNSQKEQGSA-KCSGS 560 (570)
T ss_dssp HHHHHHHHTGGGEESCC-BBTTT
T ss_pred HHHHHHHhccccCCCch-hhCCC
Confidence 33111 223455665 77654
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.3e-48 Score=432.25 Aligned_cols=491 Identities=20% Similarity=0.217 Sum_probs=295.8
Q ss_pred CccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchH
Q 041562 62 CCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPST 140 (653)
Q Consensus 62 ~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~ 140 (653)
.|.|.|| |+. ++++++ .+|+.+. ++|++|+|++|.+++..|..+.. ++|++|+|++|++++ +++.
T Consensus 3 ~C~~~~~-c~~---------~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~ 68 (549)
T 2z81_A 3 SCDASGV-CDG---------RSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGD 68 (549)
T ss_dssp EECTTSE-EEC---------TTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTT
T ss_pred cCCCCce-EEC---------CCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChh
Confidence 4899998 863 223333 3444332 56666666666666555555555 666666666666663 3333
Q ss_pred HHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCcc-ccccC
Q 041562 141 IFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLP-DDIYT 218 (653)
Q Consensus 141 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~ 218 (653)
.+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.+
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 146 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFG--PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHT--TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred hccccccCCEEECCCCccCccCHHHhc--cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence 344566666666666666665554332 56666666666666664 345566666666666666666433443 45666
Q ss_pred CCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccC--C-ccccCCCCCc
Q 041562 219 ATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSL--P-SSLKNCINLT 295 (653)
Q Consensus 219 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p-~~l~~l~~L~ 295 (653)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|++|++++|++++.. | .....+++|+
T Consensus 147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 226 (549)
T 2z81_A 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226 (549)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred ccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhccc
Confidence 666666666666666666666666666666666666655322222345666666666666666431 1 1123456666
Q ss_pred EEEccCCcCccccCh---hhccCCCCcCEEEccCCcccccC------CccCcCCCCCCeEEccCcccccc-----Cchhh
Q 041562 296 LLNLQSNFFEGDISV---FNFSTLLKLRVLDLGSNLFTGSL------PITLNSCKSLTAVNLARNQLEGQ-----ISPGI 361 (653)
Q Consensus 296 ~L~L~~n~l~~~i~~---~~~~~l~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~L~~n~l~~~-----~~~~l 361 (653)
.|++++|.+++..+. ..+..+++|+.+++++|.+.+.. ...+..+++|+.+++.++.+... ++..+
T Consensus 227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~ 306 (549)
T 2z81_A 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306 (549)
T ss_dssp EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred ceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhh
Confidence 666666666543221 12344566666666666655421 12234556666777666655421 11222
Q ss_pred cCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccch--hh
Q 041562 362 VALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVP--SW 439 (653)
Q Consensus 362 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p--~~ 439 (653)
...++|++|++++|.++.++..+ +..+++|++|++++|.+.+.+|.. ...+..+++|++|++++|++++..+ ..
T Consensus 307 ~~~~~L~~L~l~~n~l~~ip~~~--~~~l~~L~~L~Ls~N~l~~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 382 (549)
T 2z81_A 307 SLLEKVKRITVENSKVFLVPCSF--SQHLKSLEFLDLSENLMVEEYLKN--SACKGAWPSLQTLVLSQNHLRSMQKTGEI 382 (549)
T ss_dssp HHSTTCCEEEEESSCCCCCCHHH--HHHCTTCCEEECCSSCCCHHHHHH--HTCTTSSTTCCEEECTTSCCCCHHHHHHH
T ss_pred hhcccceEEEeccCccccCCHHH--HhcCccccEEEccCCccccccccc--hhhhhccccCcEEEccCCcccccccchhh
Confidence 33456777777777776555322 235667777777777766544321 0112356777777777777764322 44
Q ss_pred hcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCccc
Q 041562 440 IGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNF 519 (653)
Q Consensus 440 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 519 (653)
+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+. +.|+.++++++....
T Consensus 383 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~--~~L~~L~Ls~N~l~~------------- 445 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDS------------- 445 (549)
T ss_dssp GGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSC--TTCSEEECCSSCCSC-------------
T ss_pred hhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhc--CCceEEECCCCChhh-------------
Confidence 667777777777777777 566667777777777777777762 333221 344544444321110
Q ss_pred ccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCC
Q 041562 520 IGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLS 599 (653)
Q Consensus 520 ~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~ 599 (653)
+. +.++ .|++|+|++|+++ .+|. ...+++|++|||++|++++.+|..+..+++|+
T Consensus 446 ---------~~-------------~~l~-~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 446 ---------FS-------------LFLP-RLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp ---------CC-------------CCCT-TCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred ---------hc-------------ccCC-hhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 00 1122 7888888888888 5665 46788888889988888888787788888888
Q ss_pred eeecCCCcccccCCC
Q 041562 600 AFNVAENNLRGSIPS 614 (653)
Q Consensus 600 ~L~ls~N~l~g~iP~ 614 (653)
+|++++|++.|..|.
T Consensus 501 ~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 501 KIWLHTNPWDCSCPR 515 (549)
T ss_dssp EEECCSSCBCCCHHH
T ss_pred EEEecCCCccCCCcc
Confidence 888888888888774
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.5e-48 Score=428.24 Aligned_cols=442 Identities=20% Similarity=0.205 Sum_probs=354.4
Q ss_pred CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562 74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152 (653)
Q Consensus 74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~ 152 (653)
.+++.|+|+++.+++..+..|+++++|++|+|++|.+++..|..+.. ++|++|++++|.++ .+|...+..+++|++|+
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELN 130 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEE
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEe
Confidence 57999999999999988889999999999999999999888888877 99999999999998 56654467899999999
Q ss_pred ccCCcCccc-CChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCC----CEEEcccCCCCCCccccccCCCCCCEEec
Q 041562 153 VSNNSFTGL-ISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRL----KTFRAGFNYLTGSLPDDIYTATSLEQLSL 227 (653)
Q Consensus 153 Ls~n~l~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 227 (653)
+++|.+++. +|..+. ++++|++|++++|.+++..+..++.+++| +.+++++|.+++..|..+... +|++|++
T Consensus 131 L~~n~l~~~~lp~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l 207 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTL 207 (570)
T ss_dssp CCSSCCCCCCCCGGGG--GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEE
T ss_pred cCCCccceecChhhhc--ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEec
Confidence 999999884 566554 69999999999999998888888888888 899999999998777766655 8999999
Q ss_pred cCCcCcc-cccccccCCCCC--------------------------------cEEEcccC-cCCcccCccccCCCCCCeE
Q 041562 228 SFNHISG-SIKNGIVNLTSL--------------------------------RILELYSN-SLTGLIPRDIGKLTNLESL 273 (653)
Q Consensus 228 s~n~i~~-~~~~~l~~l~~L--------------------------------~~L~L~~n-~l~~~~p~~l~~l~~L~~L 273 (653)
++|.... .++..+..++.+ +.++++++ .+.+..|..+..+++|++|
T Consensus 208 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L 287 (570)
T 2z63_A 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287 (570)
T ss_dssp ESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEE
T ss_pred ccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEE
Confidence 9885331 223333333333 44555555 5566677778888888888
Q ss_pred EeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccc
Q 041562 274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL 353 (653)
Q Consensus 274 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 353 (653)
++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+
T Consensus 288 ~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l 359 (570)
T 2z63_A 288 SLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGL 359 (570)
T ss_dssp EEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCC
T ss_pred EecCccch-hhhhhhccC-CccEEeeccCccc-ccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCcc
Confidence 88888887 577777777 8888888888887 5553 4677888888888887765554 6678888888888888
Q ss_pred cccC--chhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCc
Q 041562 354 EGQI--SPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECK 431 (653)
Q Consensus 354 ~~~~--~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 431 (653)
++.. +..+..+++|++|++++|.++.++.. +..+++|+.|++++|.+.+..+.. .+..+++|++|++++|.
T Consensus 360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIYLDISHTH 432 (570)
T ss_dssp BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTTSEEESCTTSC----TTTTCTTCCEEECTTSC
T ss_pred CccccccccccccCccCEEECCCCcccccccc---ccccCCCCEEEccCCccccccchh----hhhcCCCCCEEeCcCCc
Confidence 7554 66778888888888888887765432 667888888888888777654421 23467888888888888
Q ss_pred CcccchhhhcCCccCCeeeCcCCcCc-cCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccccccccccccc
Q 041562 432 LKGQVPSWIGKLKKLQVLDLSFNQLT-GSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEF 510 (653)
Q Consensus 432 l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~ 510 (653)
+.+..|..+..+++|++|++++|++. +.+|..+..+++|++|++++|++++..|..+..++
T Consensus 433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------------------ 494 (570)
T 2z63_A 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------------------ 494 (570)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT------------------
T ss_pred ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc------------------
Confidence 88777888888888888888888887 56777788888888888888888877676665544
Q ss_pred ccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCc
Q 041562 511 SLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPV 590 (653)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~ 590 (653)
+|++|+|++|++++..|..|+++++|++|++++|++++..|.
T Consensus 495 --------------------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 495 --------------------------------------SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp --------------------------------------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred --------------------------------------CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 788999999999998888999999999999999999988774
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-47 Score=444.14 Aligned_cols=500 Identities=20% Similarity=0.167 Sum_probs=409.3
Q ss_pred EEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCC
Q 041562 78 HLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNN 156 (653)
Q Consensus 78 ~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n 156 (653)
..+.++++++. +|. -.++|++|||++|.+++..|..+.. ++|++|+|++|...+.+++..+..+++|++|+|++|
T Consensus 8 ~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 34556677764 444 4589999999999999988888888 999999999998888887777889999999999999
Q ss_pred cCcccCChhhhhcCCCCCCEEEccCCcCccCCCcc--CCCCCCCCEEEcccCCCCCCcc-ccccCCCCCCEEeccCCcCc
Q 041562 157 SFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLG--LGSCSRLKTFRAGFNYLTGSLP-DDIYTATSLEQLSLSFNHIS 233 (653)
Q Consensus 157 ~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~i~ 233 (653)
.+++..|..+. .+++|++|++++|.+++.++.. +.++++|++|++++|.+++..+ ..+.++++|++|++++|.+.
T Consensus 84 ~l~~~~p~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 84 KIYFLHPDAFQ--GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp CCCEECTTSSC--SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred cCcccCHhHcc--CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 99998877654 7999999999999999866665 9999999999999999987655 57999999999999999999
Q ss_pred ccccccccCC--CCCcEEEcccCcCCcccCccccCCCC------CCeEEeecCcCcccCCccccCC---CCCcEEEccCC
Q 041562 234 GSIKNGIVNL--TSLRILELYSNSLTGLIPRDIGKLTN------LESLVLHNNSLSGSLPSSLKNC---INLTLLNLQSN 302 (653)
Q Consensus 234 ~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~L~~n 302 (653)
+..+..+..+ ++|+.|++++|.+.+..|..++.+++ |++|++++|.+++..+..+... .+++.|.+..+
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 8888888887 89999999999999988887777665 9999999999988888776543 67888888744
Q ss_pred cCcc--------ccChhhccCC--CCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEEC
Q 041562 303 FFEG--------DISVFNFSTL--LKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSL 372 (653)
Q Consensus 303 ~l~~--------~i~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 372 (653)
.... .+....+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 3221 1122234443 78999999999999888999999999999999999999998999999999999999
Q ss_pred CCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCc
Q 041562 373 SNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLS 452 (653)
Q Consensus 373 s~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 452 (653)
++|.++.+.. ..+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+++ ++ .+++|+.|+++
T Consensus 322 s~N~l~~~~~--~~~~~l~~L~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~ 389 (844)
T 3j0a_A 322 SYNLLGELYS--SNFYGLPKVAYIDLQKNHIAIIQDQT-----FKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLS 389 (844)
T ss_dssp ESCCCSCCCS--CSCSSCTTCCEEECCSCCCCCCCSSC-----SCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEE
T ss_pred CCCCCCccCH--HHhcCCCCCCEEECCCCCCCccChhh-----hcCCCCCCEEECCCCCCCc-cc----CCCCcchhccC
Confidence 9999986643 45788999999999999987665542 3578999999999999984 33 38899999999
Q ss_pred CCcCccCCchhhcCCCCCCEEEccCCcCcccCC-ccccCCCCCCcccccccccccccccccccCCccccccccccccccc
Q 041562 453 FNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFP-KEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHE 531 (653)
Q Consensus 453 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (653)
+|++. .+|.. ..+++.|++++|++++... ..+..+++|+.++++++.........
T Consensus 390 ~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------------- 445 (844)
T 3j0a_A 390 GNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ-------------------- 445 (844)
T ss_dssp SCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS--------------------
T ss_pred CCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc--------------------
Confidence 99998 55543 5689999999999986532 34568899998888765332111000
Q ss_pred ccceeeeCChHHHhHHhccCeeecCCccCc-----cccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCC
Q 041562 532 QYTWKTTASAAVSLLRLLLHMLDLSHNNFS-----GNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAEN 606 (653)
Q Consensus 532 ~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N 606 (653)
....++ +|+.|+|++|.++ +..|..|..+++|++|||++|++++..|..+..+++|++|++++|
T Consensus 446 ----------~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 514 (844)
T 3j0a_A 446 ----------TPSENP-SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN 514 (844)
T ss_dssp ----------SSCSCT-TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESC
T ss_pred ----------ccccCC-ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCC
Confidence 001123 8999999999997 455677899999999999999999998998999999999999999
Q ss_pred cccccCCCCCCCCCcCCCccCCCCC
Q 041562 607 NLRGSIPSGGQFDTFPSSSFRGNPD 631 (653)
Q Consensus 607 ~l~g~iP~~~~~~~~~~~~~~gn~~ 631 (653)
++++..|.. ....+....+.+|..
T Consensus 515 ~l~~l~~~~-~~~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 515 RLTVLSHND-LPANLEILDISRNQL 538 (844)
T ss_dssp CCSSCCCCC-CCSCCCEEEEEEECC
T ss_pred CCCccChhh-hhccccEEECCCCcC
Confidence 999654443 235566666666643
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.8e-47 Score=418.56 Aligned_cols=453 Identities=20% Similarity=0.251 Sum_probs=354.8
Q ss_pred EEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccC
Q 041562 77 SHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN 155 (653)
Q Consensus 77 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~ 155 (653)
+.+|+++++++ .+|..+. ++|++|+|++|.+++..|..+.. ++|++|+|++|++++..| ..+..+++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCC
Confidence 36888899888 5777666 89999999999998877777776 889999999999884434 4456788999999999
Q ss_pred CcCcccCChhhhhcCCCCCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCccccccCCCCC--CEEeccCCcC
Q 041562 156 NSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSL--EQLSLSFNHI 232 (653)
Q Consensus 156 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~Ls~n~i 232 (653)
|.+++..+. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 79 N~l~~lp~~-----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 79 NKLVKISCH-----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SCCCEEECC-----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred CceeecCcc-----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 988854332 58889999999999887 577888999999999999998876 356667777 9999999988
Q ss_pred --cccccccccCCC-CCcEEEcccCcCCcccCc-cccCCCCCCeEEeecCc-------CcccCCccccCCCCCcEEEccC
Q 041562 233 --SGSIKNGIVNLT-SLRILELYSNSLTGLIPR-DIGKLTNLESLVLHNNS-------LSGSLPSSLKNCINLTLLNLQS 301 (653)
Q Consensus 233 --~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-------l~~~~p~~l~~l~~L~~L~L~~ 301 (653)
.+..|..+..+. ....+++++|.+.+.++. .+..+++|+.+++++|. +.+.+| .+..+++|+.|++++
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence 777777777665 344567778887765554 56778889999999887 666665 688889999999988
Q ss_pred CcCccccChhh--ccCCCCcCEEEccCCcccccCCccC-----cCCCCCCeEEccCccccccCc-hhhcCC---CCCCEE
Q 041562 302 NFFEGDISVFN--FSTLLKLRVLDLGSNLFTGSLPITL-----NSCKSLTAVNLARNQLEGQIS-PGIVAL---KSLSFL 370 (653)
Q Consensus 302 n~l~~~i~~~~--~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~l~~l---~~L~~L 370 (653)
|.+.+...... ....++|++|++++|.++|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L 307 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNF 307 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEE
Confidence 88765322111 1124588999999999988888888 8888899999998888 445 444444 678999
Q ss_pred ECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcc--cchhhhcCCccCCe
Q 041562 371 SLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG--QVPSWIGKLKKLQV 448 (653)
Q Consensus 371 ~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~ 448 (653)
++++|.+..++ ....+++|++|++++|.+.+.+|... ..+++|++|++++|++++ .+|..+..+++|++
T Consensus 308 ~l~~n~l~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 308 TVSGTRMVHML----CPSKISPFLHLDFSNNLLTDTVFENC-----GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp EEESSCCCCCC----CCSSCCCCCEEECCSSCCCTTTTTTC-----CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred EcCCCcccccc----chhhCCcccEEEeECCccChhhhhhh-----ccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence 99998876543 12577888888888888887666533 467888888888888886 55677888888888
Q ss_pred eeCcCCcCccCCch-hhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCccccccccccc
Q 041562 449 LDLSFNQLTGSVPR-FLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKIL 527 (653)
Q Consensus 449 L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (653)
|++++|++.+.+|. .+..+++|++|++++|++++.+|..+.
T Consensus 379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-------------------------------------- 420 (520)
T 2z7x_B 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-------------------------------------- 420 (520)
T ss_dssp EECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--------------------------------------
T ss_pred EECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--------------------------------------
Confidence 88888888875664 377788888888888888766554332
Q ss_pred ccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcc-cccCCCCCeeecCCC
Q 041562 528 TFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVS-LKRLHFLSAFNVAEN 606 (653)
Q Consensus 528 ~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N 606 (653)
+ .|+.|+|++|+++ .+|..+..+++|++|||++|+++ .+|.. +..+++|++|++++|
T Consensus 421 -------------------~-~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 421 -------------------P-RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp -------------------T-TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred -------------------c-cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCC
Confidence 1 7899999999999 78888889999999999999999 56765 889999999999999
Q ss_pred cccccCC
Q 041562 607 NLRGSIP 613 (653)
Q Consensus 607 ~l~g~iP 613 (653)
++++..+
T Consensus 479 ~~~c~c~ 485 (520)
T 2z7x_B 479 PWDCSCP 485 (520)
T ss_dssp CBCCCHH
T ss_pred CCcccCC
Confidence 9998665
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-48 Score=436.40 Aligned_cols=461 Identities=19% Similarity=0.223 Sum_probs=339.2
Q ss_pred CCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCC------CC------CCchHHHhcCCCCcEEEccCCcCcccCCh
Q 041562 98 THLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHF------QG------KIPSTIFRLTQNLITFNVSNNSFTGLISW 164 (653)
Q Consensus 98 ~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l------~~------~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~ 164 (653)
.+++.|+|+++.+.|.+|+.++. ++|++|+|++|.+ .| .+|... +..|+ +++++|.+.+.++.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence 57889999999999999998888 9999999999976 33 566655 34566 78888877777665
Q ss_pred hhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEc--ccCCCCCCccccccCCCCCCEEeccCCcCccc-------
Q 041562 165 SAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRA--GFNYLTGSLPDDIYTATSLEQLSLSFNHISGS------- 235 (653)
Q Consensus 165 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~------- 235 (653)
.+.. .+..+..+++....+.. .....++.+.+ ..|.+++ +|..++++++|++|+|++|.+++.
T Consensus 157 ~~~~-~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 228 (636)
T 4eco_A 157 DFSD-LIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228 (636)
T ss_dssp GSCH-HHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS
T ss_pred hHHH-HHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccc
Confidence 4321 11222222322221110 11112222222 2456666 777777777777777777777764
Q ss_pred ----------cccccc--CCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCc-Ccc-cCCccccCC------CCCc
Q 041562 236 ----------IKNGIV--NLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNS-LSG-SLPSSLKNC------INLT 295 (653)
Q Consensus 236 ----------~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~ 295 (653)
+|..++ ++++|++|++++|++.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|+
T Consensus 229 ~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~ 308 (636)
T 4eco_A 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308 (636)
T ss_dssp CTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC
T ss_pred ccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC
Confidence 777777 77788888888887777777777777888888888877 776 677766665 7788
Q ss_pred EEEccCCcCccccCh-hhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCC-CCEEECC
Q 041562 296 LLNLQSNFFEGDISV-FNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKS-LSFLSLS 373 (653)
Q Consensus 296 ~L~L~~n~l~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls 373 (653)
+|++++|.++ .+|. ..++.+++|++|++++|.++|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|+++
T Consensus 309 ~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 309 IIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFA 385 (636)
T ss_dssp EEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECC
T ss_pred EEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEcc
Confidence 8888888777 6663 257777888888888888877777 7777788888888888877 67777777777 8888888
Q ss_pred CCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCC--CCCCCcCEEEccCCcCcccchhhhcCCccCCeeeC
Q 041562 374 NNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSA--NGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDL 451 (653)
Q Consensus 374 ~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 451 (653)
+|.++.++..+. ...+++|+.|++++|.+.+.+|..+..... -.+++|++|++++|++++..+..+..+++|++|++
T Consensus 386 ~N~l~~lp~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 386 HNKLKYIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464 (636)
T ss_dssp SSCCSSCCSCCC-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEEC
T ss_pred CCcCcccchhhh-hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEEC
Confidence 888876664321 122347888888888888777764431111 14568999999999999544445667999999999
Q ss_pred cCCcCccCCchh-hcCC-------CCCCEEEccCCcCcccCCcccc--CCCCCCcccccccccccccccccccCCccccc
Q 041562 452 SFNQLTGSVPRF-LGNM-------SSLFHIDFSNNLISGEFPKEFC--RLPALTPEQDKNKANESYLEFSLFKGSNNFIG 521 (653)
Q Consensus 452 s~n~l~~~~~~~-~~~l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 521 (653)
++|+++ .+|.. +... ++|++|++++|+++ .+|..+. .++
T Consensus 465 s~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~----------------------------- 513 (636)
T 4eco_A 465 MGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP----------------------------- 513 (636)
T ss_dssp CSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT-----------------------------
T ss_pred CCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC-----------------------------
Confidence 999999 55543 3332 38999999999998 6666554 333
Q ss_pred ccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeC------CCCeeeeecCcccccC
Q 041562 522 EYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDL------SKNHLSGEIPVSLKRL 595 (653)
Q Consensus 522 ~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdL------s~N~l~~~ip~~l~~l 595 (653)
.|+.|+|++|++++ +|..+.++++|++|+| ++|++.+.+|..+..+
T Consensus 514 ---------------------------~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l 565 (636)
T 4eco_A 514 ---------------------------YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565 (636)
T ss_dssp ---------------------------TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred ---------------------------CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC
Confidence 78999999999997 8999999999999999 5688999999999999
Q ss_pred CCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCCC
Q 041562 596 HFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGA 635 (653)
Q Consensus 596 ~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~ 635 (653)
++|++|++++|++ +.||.. .+.++....+.+|+..|-.
T Consensus 566 ~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 566 PSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp SSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred CCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcccc
Confidence 9999999999999 799986 3478888899999988843
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.4e-46 Score=415.88 Aligned_cols=478 Identities=18% Similarity=0.185 Sum_probs=360.2
Q ss_pred ccccceEeCC---CCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCc
Q 041562 63 CLWEGIKCDA---NGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIP 138 (653)
Q Consensus 63 c~w~gv~c~~---~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip 138 (653)
|++.+++.-. ..+++.|+|+++.+++..+..|.++++|++|+|++|.+++..|..+.. ++|++|+|++|.++ .+|
T Consensus 12 ~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~ 90 (549)
T 2z81_A 12 GRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLS 90 (549)
T ss_dssp CTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCC
T ss_pred CCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccC
Confidence 3455554422 358999999999999999999999999999999999999988888887 99999999999999 566
Q ss_pred hHHHhcCCCCcEEEccCCcCccc-CChhhhhcCCCCCCEEEccCCcCccCCC-ccCCCCCCCCEEEcccCCCCCCccccc
Q 041562 139 STIFRLTQNLITFNVSNNSFTGL-ISWSAWVDSFCSIRHLDLSNNRFTGPVP-LGLGSCSRLKTFRAGFNYLTGSLPDDI 216 (653)
Q Consensus 139 ~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l 216 (653)
...+..+++|++|++++|.+++. .+..+ ..+++|++|++++|.+.+.+| ..+..+++|++|++++|.+++..|..+
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLF--PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSC--TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhh--hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 66667899999999999999874 33333 379999999999999555554 689999999999999999999999999
Q ss_pred cCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCccc--C-ccccCCCCCCeEEeecCcCcccCC----cccc
Q 041562 217 YTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLI--P-RDIGKLTNLESLVLHNNSLSGSLP----SSLK 289 (653)
Q Consensus 217 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~--p-~~l~~l~~L~~L~L~~n~l~~~~p----~~l~ 289 (653)
..+++|++|+++.|.+.......+..+++|++|++++|++++.. | .....+++|+.|++++|.+++..+ ..+.
T Consensus 169 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 248 (549)
T 2z81_A 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248 (549)
T ss_dssp TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGG
T ss_pred hccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhh
Confidence 99999999999999987433333467999999999999998752 2 223457899999999998876443 3346
Q ss_pred CCCCCcEEEccCCcCccccC-----hhhccCCCCcCEEEccCCccccc-----CCccCcCCCCCCeEEccCccccccCch
Q 041562 290 NCINLTLLNLQSNFFEGDIS-----VFNFSTLLKLRVLDLGSNLFTGS-----LPITLNSCKSLTAVNLARNQLEGQISP 359 (653)
Q Consensus 290 ~l~~L~~L~L~~n~l~~~i~-----~~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~~~~ 359 (653)
.+++|+.+++++|.+.+... ...+..+++|+.|++.++.+... ++..+...++|++|++++|.+. .+|.
T Consensus 249 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~ 327 (549)
T 2z81_A 249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPC 327 (549)
T ss_dssp GCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCH
T ss_pred hhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCH
Confidence 77899999999998765211 11345677788888887766532 1111233467888888888876 5565
Q ss_pred hh-cCCCCCCEEECCCCCCCCCC-cchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccch
Q 041562 360 GI-VALKSLSFLSLSNNSLTNIT-GAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVP 437 (653)
Q Consensus 360 ~l-~~l~~L~~L~Ls~n~l~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 437 (653)
.+ ..+++|++|++++|+++... .....+..+++|+.|++++|.+.+..+.. ..+..+++|++|++++|+++ .+|
T Consensus 328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~~~l~~L~~L~Ls~N~l~-~lp 403 (549)
T 2z81_A 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG---EILLTLKNLTSLDISRNTFH-PMP 403 (549)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHH---HHGGGCTTCCEEECTTCCCC-CCC
T ss_pred HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccch---hhhhcCCCCCEEECCCCCCc-cCC
Confidence 55 46788888888888876421 11223567788888888888776432100 11345678888888888887 577
Q ss_pred hhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCc
Q 041562 438 SWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSN 517 (653)
Q Consensus 438 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 517 (653)
..+..+++|++|++++|++. .+|..+ .++|++|++++|++++.+ ..++.|+.++++++...
T Consensus 404 ~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~------------ 464 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK------------ 464 (549)
T ss_dssp SCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS------------
T ss_pred hhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC------------
Confidence 77777888888888888877 334333 257888888888887643 46677777776653221
Q ss_pred ccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecC
Q 041562 518 NFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIP 589 (653)
Q Consensus 518 ~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip 589 (653)
.+|. .+.++ .|++|+|++|++++.+|..++.+++|++||+++|++++..|
T Consensus 465 --------------------~ip~-~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 465 --------------------TLPD-ASLFP-VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp --------------------SCCC-GGGCT-TCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred --------------------cCCC-cccCc-cCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 1222 12344 89999999999999999999999999999999999998776
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-46 Score=414.01 Aligned_cols=455 Identities=22% Similarity=0.248 Sum_probs=378.5
Q ss_pred CEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEcc
Q 041562 101 SHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLS 180 (653)
Q Consensus 101 ~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls 180 (653)
++||+++|.++ .+|..+. ++|++|+|++|.++ .++...+..+++|++|++++|.+++..|..+. .+++|++|+++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS-QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFK--FNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC-TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGT--TCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc-ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhh--cccCCCEEecC
Confidence 68999999999 5776665 89999999999999 55555667799999999999999998776654 79999999999
Q ss_pred CCcCccCCCccCCCCCCCCEEEcccCCCCC-CccccccCCCCCCEEeccCCcCcccccccccCCCCC--cEEEcccCcC-
Q 041562 181 NNRFTGPVPLGLGSCSRLKTFRAGFNYLTG-SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSL--RILELYSNSL- 256 (653)
Q Consensus 181 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L--~~L~L~~n~l- 256 (653)
+|+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred CCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 99998 45655 89999999999999997 578999999999999999999986 457777888 9999999999
Q ss_pred -CcccCccccCCC-CCCeEEeecCcCcccCCc-cccCCCCCcEEEccCCc-------CccccChhhccCCCCcCEEEccC
Q 041562 257 -TGLIPRDIGKLT-NLESLVLHNNSLSGSLPS-SLKNCINLTLLNLQSNF-------FEGDISVFNFSTLLKLRVLDLGS 326 (653)
Q Consensus 257 -~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-------l~~~i~~~~~~~l~~L~~L~L~~ 326 (653)
.+..|..+..+. +...+++++|.+.+.++. .+..+++|+.|++++|. +.+.++ .+..+++|+.|++++
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccccc
Confidence 778888777765 344677888888765554 56789999999999997 666665 688899999999999
Q ss_pred CcccccCCccCc---CCCCCCeEEccCccccccCchhh-----cCCCCCCEEECCCCCCCCCC-cchhhccCCCCCcEEE
Q 041562 327 NLFTGSLPITLN---SCKSLTAVNLARNQLEGQISPGI-----VALKSLSFLSLSNNSLTNIT-GAIRILMGCKNLKVLI 397 (653)
Q Consensus 327 n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~-~~~~~l~~l~~L~~L~ 397 (653)
|.+++..+..+. ..++|++|++++|.++|.+|..+ ..+++|+.+++++|.+ .++ ..+..+....+|+.|+
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence 988764322221 24689999999999999999888 8899999999999998 565 2333332336799999
Q ss_pred CCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCcc--CCchhhcCCCCCCEEEc
Q 041562 398 IPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTG--SVPRFLGNMSSLFHIDF 475 (653)
Q Consensus 398 l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L 475 (653)
+++|.+.+... +..+++|++|++++|++++.+|..+..+++|++|++++|++.+ .+|..+..+++|++|++
T Consensus 309 l~~n~l~~~~~-------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 309 VSGTRMVHMLC-------PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp EESSCCCCCCC-------CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred cCCCccccccc-------hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 99998765321 1367899999999999998899999999999999999999997 56678999999999999
Q ss_pred cCCcCcccCCcc-ccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeee
Q 041562 476 SNNLISGEFPKE-FCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLD 554 (653)
Q Consensus 476 s~N~l~~~~p~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~ 554 (653)
++|++++.+|.. +..++ .|+.|+
T Consensus 382 s~N~l~~~l~~~~~~~l~--------------------------------------------------------~L~~L~ 405 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTK--------------------------------------------------------SLLSLN 405 (520)
T ss_dssp CSSCCBCCGGGCSCCCCT--------------------------------------------------------TCCEEE
T ss_pred CCCcCCcccccchhccCc--------------------------------------------------------cCCEEE
Confidence 999998766653 33322 789999
Q ss_pred cCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCC--CCCCCcCCCccCCCCCC
Q 041562 555 LSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG--GQFDTFPSSSFRGNPDL 632 (653)
Q Consensus 555 Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~--~~~~~~~~~~~~gn~~l 632 (653)
+++|.+++.+|..+. ++|++|||++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+..+....+.|||.-
T Consensus 406 Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 406 MSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCc
Confidence 999999988888775 79999999999999 89998889999999999999999 67764 45666778889999999
Q ss_pred CCCC
Q 041562 633 CGAI 636 (653)
Q Consensus 633 c~~~ 636 (653)
|..+
T Consensus 482 c~c~ 485 (520)
T 2z7x_B 482 CSCP 485 (520)
T ss_dssp CCHH
T ss_pred ccCC
Confidence 9654
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.9e-44 Score=410.65 Aligned_cols=445 Identities=19% Similarity=0.209 Sum_probs=248.8
Q ss_pred CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEc-cCCcCcccCChhhhhc--CCCC-----CCE------EE-ccCCcCc
Q 041562 121 NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNV-SNNSFTGLISWSAWVD--SFCS-----IRH------LD-LSNNRFT 185 (653)
Q Consensus 121 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~--~l~~-----L~~------L~-Ls~n~l~ 185 (653)
..++.|+|++|.+.|.+|+.+. .+++|++|+| ++|.+.|..+...... .+.. ++. ++ .....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~-~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGG-GCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHh-ccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 5788999999999999998754 5999999999 8888877644221000 0000 000 00 0000000
Q ss_pred -----------cCCCccCCCCCCCCEEEccc--CCCCCCccccccCCCCCCEEeccCCcCcc-----------------c
Q 041562 186 -----------GPVPLGLGSCSRLKTFRAGF--NYLTGSLPDDIYTATSLEQLSLSFNHISG-----------------S 235 (653)
Q Consensus 186 -----------~~~~~~~~~l~~L~~L~L~~--n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~-----------------~ 235 (653)
...+........++.+.+.. |.+++ +|..++++++|++|+|++|.+++ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00000001111222222222 44443 45555555555555555555554 2
Q ss_pred cccccc--CCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCc-Ccc-cCCccccCCC-------CCcEEEccCCcC
Q 041562 236 IKNGIV--NLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNS-LSG-SLPSSLKNCI-------NLTLLNLQSNFF 304 (653)
Q Consensus 236 ~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l 304 (653)
+|..++ ++++|++|++++|++.+.+|..++++++|++|+|++|+ +++ .+|..++.++ +|++|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 555544 55555555555555555555555555555555555555 554 4444333332 555555555555
Q ss_pred ccccCh-hhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCC-CCEEECCCCCCCCCCc
Q 041562 305 EGDISV-FNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKS-LSFLSLSNNSLTNITG 382 (653)
Q Consensus 305 ~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~ 382 (653)
+ .+|. ..+..+++|+.|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++.++.
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~ 636 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPN 636 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCS
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCch
Confidence 5 4442 23555555555555555555 455 5555555555555555555 45555555555 5566666555554442
Q ss_pred chhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhh-hcCCccCCeeeCcCCcCccCCc
Q 041562 383 AIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSW-IGKLKKLQVLDLSFNQLTGSVP 461 (653)
Q Consensus 383 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~ 461 (653)
.+. ....++|+.|++++|.+.+.+|........-.+++|+.|++++|.++ .+|.. +..+++|+.|+|++|++. .+|
T Consensus 637 ~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip 713 (876)
T 4ecn_A 637 IFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIP 713 (876)
T ss_dssp CCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCC
T ss_pred hhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccC
Confidence 211 11122356666666665554443221111112345666666666666 34433 335666666666666666 444
Q ss_pred hhhcC--------CCCCCEEEccCCcCcccCCcccc--CCCCCCcccccccccccccccccccCCccccccccccccccc
Q 041562 462 RFLGN--------MSSLFHIDFSNNLISGEFPKEFC--RLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHE 531 (653)
Q Consensus 462 ~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (653)
..+.. +++|++|+|++|+++ .+|..+. .+++|+.++++++.
T Consensus 714 ~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~---------------------------- 764 (876)
T 4ecn_A 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC---------------------------- 764 (876)
T ss_dssp TTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC----------------------------
T ss_pred hHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC----------------------------
Confidence 33322 226666666666666 5565555 56666655554321
Q ss_pred ccceeeeCChHHHhHHhccCeeecCC------ccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCC
Q 041562 532 QYTWKTTASAAVSLLRLLLHMLDLSH------NNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAE 605 (653)
Q Consensus 532 ~~~l~g~ip~~l~~l~~~L~~L~Ls~------N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~ 605 (653)
+.+ +|..++.++ .|+.|+|++ |.+.+.+|..|+++++|++|+|++|++ +.+|..+. ++|+.|+|++
T Consensus 765 ---L~~-lp~~l~~L~-~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~ 836 (876)
T 4ecn_A 765 ---FSS-FPTQPLNSS-QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIAD 836 (876)
T ss_dssp ---CSS-CCCGGGGCT-TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCS
T ss_pred ---CCc-cchhhhcCC-CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCC
Confidence 112 444555555 788888866 888889999999999999999999999 68998765 6999999999
Q ss_pred Cccccc
Q 041562 606 NNLRGS 611 (653)
Q Consensus 606 N~l~g~ 611 (653)
|++...
T Consensus 837 N~l~~i 842 (876)
T 4ecn_A 837 NPNISI 842 (876)
T ss_dssp CTTCEE
T ss_pred CCCCcc
Confidence 998743
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.3e-43 Score=395.89 Aligned_cols=488 Identities=20% Similarity=0.192 Sum_probs=269.8
Q ss_pred CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562 74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152 (653)
Q Consensus 74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~ 152 (653)
..+++|||++|.+++..+.+|.++++|++|||++|++++..|..|.. ++|++|+|++|+++ .+|...|..+++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEE
Confidence 36889999999998877788999999999999999998777777776 88999999999988 67777788889999999
Q ss_pred ccCCcCcccCChhhhhcCCCCCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCccccccCCCC----CCEEec
Q 041562 153 VSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATS----LEQLSL 227 (653)
Q Consensus 153 Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~----L~~L~L 227 (653)
+++|++++..+..+. .+++|++|++++|.+++ ..|..++.+++|++|++++|.+++..+..+..+.+ ...+++
T Consensus 131 Ls~N~l~~l~~~~~~--~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 131 AVETNLASLENFPIG--HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp CTTSCCCCSTTCCCT--TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred CCCCcCCCCChhhhh--cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 999988887665443 68889999999998875 46778888899999999999888777777665443 346788
Q ss_pred cCCcCcccccccccCCCCCcEEEcccCcCCcc-cCccccCCCCCCeEEeecCcCc------ccC----------------
Q 041562 228 SFNHISGSIKNGIVNLTSLRILELYSNSLTGL-IPRDIGKLTNLESLVLHNNSLS------GSL---------------- 284 (653)
Q Consensus 228 s~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~------~~~---------------- 284 (653)
+.|.+....+ .......++.+++.+|..... .+..+..+..++...+..+... ...
T Consensus 209 s~n~l~~i~~-~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 209 SLNPMNFIQP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp TTCCCCEECT-TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred ccCcccccCc-ccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence 8888774433 333344566677766654322 1223444444444443322111 111
Q ss_pred -----------CccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccc
Q 041562 285 -----------PSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL 353 (653)
Q Consensus 285 -----------p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 353 (653)
+..+..+.+++.+++.++.+.. +. .+.....++.|++.+|.+.+..+ ..+..|+.+++..|.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER-VK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEE-CG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCS
T ss_pred hhhhcccccchhhhhhhhccccccccccccccc-cc--ccccchhhhhhhcccccccCcCc---ccchhhhhcccccccC
Confidence 1122223344444444444331 11 22333444444444444432211 1223444444444443
Q ss_pred cccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCc
Q 041562 354 EGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLK 433 (653)
Q Consensus 354 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 433 (653)
... .....+++|+.+++++|.+............+.+|+.+++..+......+. +..+++|+.+++.++...
T Consensus 362 ~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~------~~~l~~L~~l~l~~~~~~ 433 (635)
T 4g8a_A 362 GNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN------FLGLEQLEHLDFQHSNLK 433 (635)
T ss_dssp CCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC------CTTCTTCCEEECTTSEEE
T ss_pred CCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc------ccccccccchhhhhcccc
Confidence 321 112234444444444444432222222233344444444444433222111 123344444444444333
Q ss_pred ccch-hhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCc-ccCCccccCCCCCCcccccccccccccccc
Q 041562 434 GQVP-SWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS-GEFPKEFCRLPALTPEQDKNKANESYLEFS 511 (653)
Q Consensus 434 ~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~ 511 (653)
...+ ..+..+++++.+++++|++.+..+..+..+++|+.|++++|++. +..|..|..++
T Consensus 434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~------------------- 494 (635)
T 4g8a_A 434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR------------------- 494 (635)
T ss_dssp STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-------------------
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc-------------------
Confidence 2221 22334444444444444444444444444444444444444322 12333333333
Q ss_pred cccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcc
Q 041562 512 LFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVS 591 (653)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~ 591 (653)
+|++|||++|++++.+|..|+++++|++|+|++|++++..|..
T Consensus 495 -------------------------------------~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~ 537 (635)
T 4g8a_A 495 -------------------------------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537 (635)
T ss_dssp -------------------------------------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG
T ss_pred -------------------------------------ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhH
Confidence 4555666666666555555666666666666666665555555
Q ss_pred cccCCCCCeeecCCCcccccCCCCC-CC-CCcCCCccCCCCCCCCC
Q 041562 592 LKRLHFLSAFNVAENNLRGSIPSGG-QF-DTFPSSSFRGNPDLCGA 635 (653)
Q Consensus 592 l~~l~~L~~L~ls~N~l~g~iP~~~-~~-~~~~~~~~~gn~~lc~~ 635 (653)
+..+++|++|++++|++++.+|..- .+ .++....+.|||.-|.+
T Consensus 538 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 538 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp GTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred HhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 5555666666666666655555431 11 33444555566665543
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.8e-44 Score=394.57 Aligned_cols=454 Identities=22% Similarity=0.270 Sum_probs=351.3
Q ss_pred EEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccC
Q 041562 77 SHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN 155 (653)
Q Consensus 77 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~ 155 (653)
+.++++++++++ +|..+. ++|++|+|++|.+++..|..+.. ++|++|+|++|.+++ +++..+..+++|++|++++
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCC
Confidence 788999999985 776664 89999999999999887778877 999999999999994 4444566799999999999
Q ss_pred CcCcccCChhhhhcCCCCCCEEEccCCcCcc-CCCccCCCCCCCCEEEcccCCCCCCccccccCCCCC--CEEeccCCcC
Q 041562 156 NSFTGLISWSAWVDSFCSIRHLDLSNNRFTG-PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSL--EQLSLSFNHI 232 (653)
Q Consensus 156 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L--~~L~Ls~n~i 232 (653)
|.++...+. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++. .+..+++| ++|++++|.+
T Consensus 110 N~l~~lp~~-----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 110 NRLQNISCC-----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SCCCEECSC-----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CcCCccCcc-----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 999854432 58899999999999987 4568899999999999999998863 34455555 9999999998
Q ss_pred --cccccccccCCC-CCcEEEcccCcCCcccCc-cccCCCCCCeEEeecCc-----CcccCCccccCCCCCcEEEccCCc
Q 041562 233 --SGSIKNGIVNLT-SLRILELYSNSLTGLIPR-DIGKLTNLESLVLHNNS-----LSGSLPSSLKNCINLTLLNLQSNF 303 (653)
Q Consensus 233 --~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~L~~n~ 303 (653)
.+..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|+ +.+. ...+..+++|+.|++.++.
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCc
Confidence 777888887765 122567888888776554 45678899999999985 2222 2356788889999888887
Q ss_pred CccccCh--hhccCCCCcCEEEccCCcccccCCccC-----cCCCCCCeEEccCccccccCc-hhhc---CCCCCCEEEC
Q 041562 304 FEGDISV--FNFSTLLKLRVLDLGSNLFTGSLPITL-----NSCKSLTAVNLARNQLEGQIS-PGIV---ALKSLSFLSL 372 (653)
Q Consensus 304 l~~~i~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~~~-~~l~---~l~~L~~L~L 372 (653)
+.+.... ......++|++|++++|.++|.+|..+ ..++.|+.+++..+.+ .+| ..+. ...+|++|++
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence 6542110 012234589999999999998888877 6666666667776766 344 2222 2367999999
Q ss_pred CCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcc--cchhhhcCCccCCeee
Q 041562 373 SNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG--QVPSWIGKLKKLQVLD 450 (653)
Q Consensus 373 s~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~ 450 (653)
++|.+..+. ....+++|++|++++|.+.+.+|... ..+++|++|++++|++++ .+|..+..+++|++|+
T Consensus 339 ~~n~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 339 SDTPFIHMV----CPPSPSSFTFLNFTQNVFTDSVFQGC-----STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp ESSCCCCCC----CCSSCCCCCEEECCSSCCCTTTTTTC-----CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred cCCCccccc----CccCCCCceEEECCCCccccchhhhh-----cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 999886443 12577888888998888887666543 467888889998888886 3456688888888999
Q ss_pred CcCCcCccCCch-hhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCccccccccccccc
Q 041562 451 LSFNQLTGSVPR-FLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTF 529 (653)
Q Consensus 451 Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (653)
+++|++.+.+|. .+..+++|++|++++|++++.+|..+.
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~---------------------------------------- 449 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP---------------------------------------- 449 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC----------------------------------------
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc----------------------------------------
Confidence 998888874554 477888888899988888765554331
Q ss_pred ccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcc-cccCCCCCeeecCCCcc
Q 041562 530 HEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVS-LKRLHFLSAFNVAENNL 608 (653)
Q Consensus 530 ~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~-l~~l~~L~~L~ls~N~l 608 (653)
+ .|++|+|++|+++ .+|..+..+++|++|||++|+++ .+|.. +..+++|++|++++|++
T Consensus 450 -----------------~-~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 450 -----------------P-KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp -----------------T-TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred -----------------C-cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence 0 6899999999999 78888889999999999999999 67766 89999999999999999
Q ss_pred cccCCC
Q 041562 609 RGSIPS 614 (653)
Q Consensus 609 ~g~iP~ 614 (653)
.+..|.
T Consensus 510 ~c~c~~ 515 (562)
T 3a79_B 510 DCTCPG 515 (562)
T ss_dssp CCCHHH
T ss_pred CCCcch
Confidence 987764
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-43 Score=392.19 Aligned_cols=454 Identities=22% Similarity=0.225 Sum_probs=362.4
Q ss_pred CCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEE
Q 041562 99 HLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLD 178 (653)
Q Consensus 99 ~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~ 178 (653)
..+++|+++|.+++ +|..+. ++|++|+|++|.++ .++...+..+++|++|++++|.+++..|..+. .+++|++|+
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~-~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~ 106 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP-PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFL--FNQDLEYLD 106 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC-TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTT--TCTTCCEEE
T ss_pred CCcEEEcCCCCCcc-CCCCCC-CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhC--CCCCCCEEE
Confidence 45899999999995 666554 89999999999999 56655677899999999999999988776654 689999999
Q ss_pred ccCCcCccCCCccCCCCCCCCEEEcccCCCCC-CccccccCCCCCCEEeccCCcCcccccccccCCCCC--cEEEcccCc
Q 041562 179 LSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTG-SLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSL--RILELYSNS 255 (653)
Q Consensus 179 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L--~~L~L~~n~ 255 (653)
+++|.++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+. .+..+++| ++|++++|+
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 9999998 56665 89999999999999987 4568899999999999999999853 45555666 999999999
Q ss_pred C--CcccCccccCCC--CCCeEEeecCcCcccCCc-cccCCCCCcEEEccCCc-----CccccChhhccCCCCcCEEEcc
Q 041562 256 L--TGLIPRDIGKLT--NLESLVLHNNSLSGSLPS-SLKNCINLTLLNLQSNF-----FEGDISVFNFSTLLKLRVLDLG 325 (653)
Q Consensus 256 l--~~~~p~~l~~l~--~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~-----l~~~i~~~~~~~l~~L~~L~L~ 325 (653)
+ ++..|..+..+. .+ .+++++|.+.+.++. .+..+++|+.+++++|. +.+.++ .+..+++|+.+++.
T Consensus 181 l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~--~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS--ELTRGPTLLNVTLQ 257 (562)
T ss_dssp CCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH--HHHSCSSCEEEEEE
T ss_pred ccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH--HHhccCcceEEEec
Confidence 9 888888887764 33 567888888776554 45678899999999985 222232 57788999999998
Q ss_pred CCccccc----CCccCcCCCCCCeEEccCccccccCchhh-----cCCCCCCEEECCCCCCCCCCc-chhhccCCCCCcE
Q 041562 326 SNLFTGS----LPITLNSCKSLTAVNLARNQLEGQISPGI-----VALKSLSFLSLSNNSLTNITG-AIRILMGCKNLKV 395 (653)
Q Consensus 326 ~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~ 395 (653)
++.+.+. ++..+ ..++|++|++++|.++|.+|..+ ..++.|+.+++..+.+ .++. .+..+....+|+.
T Consensus 258 ~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 258 HIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSE
T ss_pred CCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceE
Confidence 8877642 12222 23589999999999998888877 5666666666776766 4442 2222223467999
Q ss_pred EECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccC--CchhhcCCCCCCEE
Q 041562 396 LIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGS--VPRFLGNMSSLFHI 473 (653)
Q Consensus 396 L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L 473 (653)
|++++|.+..... ...+++|++|++++|.+++.+|..+..+++|++|++++|++++. +|..+..+++|++|
T Consensus 336 L~l~~n~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 336 LSISDTPFIHMVC-------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp EEEESSCCCCCCC-------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred EEccCCCcccccC-------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence 9999998754321 13678999999999999988999999999999999999999963 45678999999999
Q ss_pred EccCCcCcccCCcc-ccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCe
Q 041562 474 DFSNNLISGEFPKE-FCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHM 552 (653)
Q Consensus 474 ~Ls~N~l~~~~p~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~ 552 (653)
++++|++++.+|.. +..++ .|++
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~--------------------------------------------------------~L~~ 432 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAE--------------------------------------------------------SILV 432 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCT--------------------------------------------------------TCCE
T ss_pred ECCCCcCCCccChhhhcCcc--------------------------------------------------------cCCE
Confidence 99999998756643 33322 7899
Q ss_pred eecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCC--CCCCCcCCCccCCCC
Q 041562 553 LDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSG--GQFDTFPSSSFRGNP 630 (653)
Q Consensus 553 L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~--~~~~~~~~~~~~gn~ 630 (653)
|+|++|++++.+|..+. ++|++|||++|+++ .+|..+..+++|++|++++|+++ .+|.. ..+..+....+.|||
T Consensus 433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCC
T ss_pred EECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCC
Confidence 99999999988887665 79999999999999 88888889999999999999999 67764 456677788899999
Q ss_pred CCCCC
Q 041562 631 DLCGA 635 (653)
Q Consensus 631 ~lc~~ 635 (653)
.-|..
T Consensus 509 ~~c~c 513 (562)
T 3a79_B 509 WDCTC 513 (562)
T ss_dssp BCCCH
T ss_pred cCCCc
Confidence 99864
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.4e-42 Score=354.69 Aligned_cols=290 Identities=28% Similarity=0.446 Sum_probs=186.2
Q ss_pred CcCCHHhHHHHHHhhhcCCCCC--CCCCCCCCCcc--ccceEeCCC---CCEEEEEcCCCCcce--eccccccCCCCCCE
Q 041562 32 QACNQIDQDSLLSLGFNISSPG--LNWSSSTDCCL--WEGIKCDAN---GRVSHLWLPWKGLTG--TISLSIGNLTHLSH 102 (653)
Q Consensus 32 ~~~~~~~~~~ll~~k~~~~~~~--~~W~~~~~~c~--w~gv~c~~~---~~v~~L~L~~~~l~g--~~~~~l~~l~~L~~ 102 (653)
+.|.++|++||++||+++.++. .+|..+.+||. |.||+|+.. ++|++|+|+++.++| .+|+.++++++|++
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 3699999999999999998765 78987889998 999999863 899999999999999 99999999999999
Q ss_pred EECCC-CCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEcc
Q 041562 103 LNLSH-NRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLS 180 (653)
Q Consensus 103 L~Ls~-n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls 180 (653)
|++++ |.+.+.+|..++. ++|++|+|++|.+++.+|..+ ..+++|++|++++|.+++.+|..+. .+++|++|+++
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~L~ 157 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSIS--SLPNLVGITFD 157 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGG--GCTTCCEEECC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCCCCEEeCCCCccCCcCChHHh--cCCCCCeEECc
Confidence 99995 9998888877766 777777777777776666543 3355566666666655555544432 35555555555
Q ss_pred CCcCccCCCccCCCCC-CCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcc
Q 041562 181 NNRFTGPVPLGLGSCS-RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGL 259 (653)
Q Consensus 181 ~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 259 (653)
+|.+++.+|..+..++ +|++|++++|.+++ .+|..+..++ |++|++++|++++.
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~------------------------~~~~~~~~l~-L~~L~Ls~N~l~~~ 212 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTG------------------------KIPPTFANLN-LAFVDLSRNMLEGD 212 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEE------------------------ECCGGGGGCC-CSEEECCSSEEEEC
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeec------------------------cCChHHhCCc-ccEEECcCCcccCc
Confidence 5555544554444444 44555555444444 4444444444 55555555555444
Q ss_pred cCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcC
Q 041562 260 IPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS 339 (653)
Q Consensus 260 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 339 (653)
.|..++.+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|. .+..+++|++|++++|.+++.+|.. ..
T Consensus 213 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~-~~ 289 (313)
T 1ogq_A 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQG-GN 289 (313)
T ss_dssp CGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred CCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCCh-HHhcCcCCCEEECcCCcccccCCCC-cc
Confidence 444455555555555555555433333 44455555555555555544442 4455555555555555555555543 44
Q ss_pred CCCCCeEEccCcc
Q 041562 340 CKSLTAVNLARNQ 352 (653)
Q Consensus 340 l~~L~~L~L~~n~ 352 (653)
+++|+.+++++|.
T Consensus 290 l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 290 LQRFDVSAYANNK 302 (313)
T ss_dssp GGGSCGGGTCSSS
T ss_pred ccccChHHhcCCC
Confidence 5555555555554
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.5e-41 Score=366.52 Aligned_cols=370 Identities=19% Similarity=0.191 Sum_probs=233.7
Q ss_pred CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCc-cccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEc
Q 041562 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSL-PDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILEL 251 (653)
Q Consensus 173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 251 (653)
+|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..|..+++|++|++++|.+.+..|..++++++|++|++
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 3444444444444434444444444444444444444333 233444445555555555444444444455555555555
Q ss_pred ccCcCCcccCcc--ccCCCCCCeEEeecCcCcccCCcc-ccCCCCCcEEEccCCcCccccChhhccCC--CCcCEEEccC
Q 041562 252 YSNSLTGLIPRD--IGKLTNLESLVLHNNSLSGSLPSS-LKNCINLTLLNLQSNFFEGDISVFNFSTL--LKLRVLDLGS 326 (653)
Q Consensus 252 ~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~i~~~~~~~l--~~L~~L~L~~ 326 (653)
++|++++..|.. ++.+++|++|++++|.+++..|.. +.++++|++|++++|.+++..+. .+..+ .+|+.|++++
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTT
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh-hhhcccccccccccccc
Confidence 555544432222 444555555555555554444433 44555555555555555433221 23222 4555555555
Q ss_pred CcccccCCcc--------CcCCCCCCeEEccCccccccCchhhcCC---CCCCEEECCCCCCCCCCcchhhccCCCCCcE
Q 041562 327 NLFTGSLPIT--------LNSCKSLTAVNLARNQLEGQISPGIVAL---KSLSFLSLSNNSLTNITGAIRILMGCKNLKV 395 (653)
Q Consensus 327 n~l~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 395 (653)
|.+.+..+.. +..+++|++|++++|.+.+..+..+... ++|+.|++++|.......
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------- 256 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF------------- 256 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT-------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc-------------
Confidence 5555333222 2345667777777777766666655433 667777777765542110
Q ss_pred EECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEc
Q 041562 396 LIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDF 475 (653)
Q Consensus 396 L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 475 (653)
..+.+.+..+..+. . ...++|++|++++|.+++..|..+..+++|++|++++|++.+..|..|..+++|++|++
T Consensus 257 ---~~~~~~~~~~~~~~--~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 330 (455)
T 3v47_A 257 ---GHTNFKDPDNFTFK--G-LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330 (455)
T ss_dssp ---TCCSSCCCCTTTTG--G-GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ---chhhhccCcccccc--c-ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEEC
Confidence 01111111111000 0 12468999999999999889999999999999999999999888989999999999999
Q ss_pred cCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeec
Q 041562 476 SNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDL 555 (653)
Q Consensus 476 s~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~L 555 (653)
++|++++..|..|..++ .|++|+|
T Consensus 331 s~N~l~~~~~~~~~~l~--------------------------------------------------------~L~~L~L 354 (455)
T 3v47_A 331 SQNFLGSIDSRMFENLD--------------------------------------------------------KLEVLDL 354 (455)
T ss_dssp CSSCCCEECGGGGTTCT--------------------------------------------------------TCCEEEC
T ss_pred CCCccCCcChhHhcCcc--------------------------------------------------------cCCEEEC
Confidence 99999877777766554 6889999
Q ss_pred CCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCCCC
Q 041562 556 SHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQF 618 (653)
Q Consensus 556 s~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 618 (653)
++|++++..|..|+.+++|++|||++|++++..+..+..+++|++|++++|++++.+|....+
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 999999988999999999999999999999766677889999999999999999999965433
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-40 Score=357.35 Aligned_cols=325 Identities=21% Similarity=0.243 Sum_probs=143.9
Q ss_pred CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CC-------------cCEEEccCCCCCCCCch
Q 041562 74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NY-------------IKIIDLSSNHFQGKIPS 139 (653)
Q Consensus 74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~-------------L~~L~Ls~n~l~~~ip~ 139 (653)
.++++++++++.+ |.+|++++++++|++|++++|.+.|.+|..++. .+ +++|++++|.++ .+|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCC
Confidence 4677888888888 788888888888888888888888888877765 33 355666666555 3333
Q ss_pred HHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCC
Q 041562 140 TIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTA 219 (653)
Q Consensus 140 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 219 (653)
..++|++|++++|.+++. |. ..++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .++++
T Consensus 89 ----~~~~L~~L~l~~n~l~~l-p~-----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 89 ----LPPHLESLVASCNSLTEL-PE-----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp ----CCTTCSEEECCSSCCSSC-CC-----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred ----CcCCCCEEEccCCcCCcc-cc-----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 134555555555555552 21 13455555555555543 1110 1345555555555543 44 34455
Q ss_pred CCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEc
Q 041562 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNL 299 (653)
Q Consensus 220 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 299 (653)
++|++|++++|++++ +|..+ .+|++|++++|++++ +| .++++++|++|++++|++++ +|... ++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEEC
T ss_pred CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEEC
Confidence 555555555554442 23221 244445555444443 23 34444444444444444442 22211 24444444
Q ss_pred cCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCC
Q 041562 300 QSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTN 379 (653)
Q Consensus 300 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 379 (653)
++|.++ .+| .+..+++|++|++++|.+++ +|.. .++|++|++++|+++.
T Consensus 223 ~~n~l~-~lp--~~~~l~~L~~L~l~~N~l~~-l~~~---------------------------~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 223 GNNILE-ELP--ELQNLPFLTTIYADNNLLKT-LPDL---------------------------PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CSSCCS-SCC--CCTTCTTCCEEECCSSCCSS-CCSC---------------------------CTTCCEEECCSSCCSC
T ss_pred cCCcCC-ccc--ccCCCCCCCEEECCCCcCCc-cccc---------------------------ccccCEEECCCCcccc
Confidence 444444 333 24444444444444444442 2221 2344444444444443
Q ss_pred CCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCC-ccCCeeeCcCCcCcc
Q 041562 380 ITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKL-KKLQVLDLSFNQLTG 458 (653)
Q Consensus 380 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~ 458 (653)
++.. .++|+.|++++|.+.+. +. -.++|++|++++|++++ ++ .+ ++|++|++++|++.+
T Consensus 272 l~~~------~~~L~~L~ls~N~l~~l-~~--------~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~ 331 (454)
T 1jl5_A 272 LPEL------PQSLTFLDVSENIFSGL-SE--------LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE 331 (454)
T ss_dssp CCCC------CTTCCEEECCSSCCSEE-SC--------CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC
T ss_pred cCcc------cCcCCEEECcCCccCcc-cC--------cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc
Confidence 3321 13444444444444331 00 01345555555555553 11 12 355666666666553
Q ss_pred CCchhhcCCCCCCEEEccCCcCc
Q 041562 459 SVPRFLGNMSSLFHIDFSNNLIS 481 (653)
Q Consensus 459 ~~~~~~~~l~~L~~L~Ls~N~l~ 481 (653)
+|.. +++|++|++++|+++
T Consensus 332 -lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 332 -LPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCS
T ss_pred -cccc---CCcCCEEECCCCccc
Confidence 3332 355666666666555
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.4e-40 Score=356.01 Aligned_cols=386 Identities=21% Similarity=0.193 Sum_probs=231.8
Q ss_pred CEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEcc
Q 041562 101 SHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLS 180 (653)
Q Consensus 101 ~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls 180 (653)
+.++.+++.++ .+|. -.++|++|+|++|.+++..|. .+..+++|++|++++|.+.+.++
T Consensus 13 ~~~~c~~~~l~-~lp~--l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~----------------- 71 (455)
T 3v47_A 13 YNAICINRGLH-QVPE--LPAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIR----------------- 71 (455)
T ss_dssp TEEECCSSCCS-SCCC--CCTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEEC-----------------
T ss_pred cccCcCCCCcc-cCCC--CCCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceEC-----------------
Confidence 34555655555 3333 115566666666655532232 23345555555555555543332
Q ss_pred CCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCccccccc--ccCCCCCcEEEcccCcCCc
Q 041562 181 NNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNG--IVNLTSLRILELYSNSLTG 258 (653)
Q Consensus 181 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~--l~~l~~L~~L~L~~n~l~~ 258 (653)
+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+.+..+.. +..+++|++|++++|++++
T Consensus 72 --------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 143 (455)
T 3v47_A 72 --------NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143 (455)
T ss_dssp --------TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS
T ss_pred --------cccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCc
Confidence 233444444444444444444444444444444444454444444433322 4445555555555555544
Q ss_pred ccCcc-ccCCCCCCeEEeecCcCcccCCccccCC--CCCcEEEccCCcCccccCh-------hhccCCCCcCEEEccCCc
Q 041562 259 LIPRD-IGKLTNLESLVLHNNSLSGSLPSSLKNC--INLTLLNLQSNFFEGDISV-------FNFSTLLKLRVLDLGSNL 328 (653)
Q Consensus 259 ~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~i~~-------~~~~~l~~L~~L~L~~n~ 328 (653)
..|.. ++++++|++|++++|.+.+..+..+..+ .+|+.|++++|.+.+..+. ..+..+++|++|++++|.
T Consensus 144 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 223 (455)
T 3v47_A 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223 (455)
T ss_dssp CCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC
T ss_pred cCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc
Confidence 44433 4445555555555555554444444433 3455555555554421110 012234556666666666
Q ss_pred ccccCCccCcCC---CCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCc
Q 041562 329 FTGSLPITLNSC---KSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDE 405 (653)
Q Consensus 329 l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 405 (653)
+++..|..+... ++|+.|++++|...+.... .+.+.........-...++|+.+++++|.+.+
T Consensus 224 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred ccccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccc
Confidence 665555444332 5666666666655432110 11111110000001123566777777777666
Q ss_pred cCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCC
Q 041562 406 TMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFP 485 (653)
Q Consensus 406 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 485 (653)
..+..+ ..+++|++|++++|++++..|..+..+++|++|++++|++.+..|..+..+++|++|++++|++++..|
T Consensus 290 ~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 364 (455)
T 3v47_A 290 LLKSVF-----SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364 (455)
T ss_dssp ECTTTT-----TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred cchhhc-----ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccCh
Confidence 655433 467899999999999998888899999999999999999998889999999999999999999998778
Q ss_pred ccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccc
Q 041562 486 KEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIP 565 (653)
Q Consensus 486 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p 565 (653)
..|..++ .|++|+|++|++++..+
T Consensus 365 ~~~~~l~--------------------------------------------------------~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 365 QSFLGLP--------------------------------------------------------NLKELALDTNQLKSVPD 388 (455)
T ss_dssp TTTTTCT--------------------------------------------------------TCCEEECCSSCCSCCCT
T ss_pred hhccccc--------------------------------------------------------cccEEECCCCccccCCH
Confidence 7776654 68899999999998777
Q ss_pred cccccCCCCCeEeCCCCeeeeecCc
Q 041562 566 DQISQLTNLERMDLSKNHLSGEIPV 590 (653)
Q Consensus 566 ~~l~~l~~L~~LdLs~N~l~~~ip~ 590 (653)
..++.+++|++|++++|++++..|.
T Consensus 389 ~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 389 GIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hHhccCCcccEEEccCCCcccCCCc
Confidence 7889999999999999999988773
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.5e-40 Score=352.68 Aligned_cols=404 Identities=22% Similarity=0.280 Sum_probs=252.0
Q ss_pred cCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCC
Q 041562 95 GNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCS 173 (653)
Q Consensus 95 ~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~ 173 (653)
.+.++|++|++++|.+ |.+|..++. ++|++|++++|.+.|.+|..+. .+++|+.+++..|. ..+
T Consensus 8 ~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~-------------~~~ 72 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCL-------------DRQ 72 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHH-------------HHT
T ss_pred cccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhh-------------ccC
Confidence 3456777777777777 566666665 6677777777666666666533 24444333333321 135
Q ss_pred CCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEccc
Q 041562 174 IRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS 253 (653)
Q Consensus 174 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 253 (653)
+++|++++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|.+.+ ++.. .++|++|++++
T Consensus 73 l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~ 140 (454)
T 1jl5_A 73 AHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSN 140 (454)
T ss_dssp CSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCS
T ss_pred CCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcC
Confidence 6888888888775 3331 3678888888888885 6643 3788888888888874 2321 16888999999
Q ss_pred CcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccC
Q 041562 254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSL 333 (653)
Q Consensus 254 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 333 (653)
|++++ +| .++++++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .++.+++|++|++++|.+++ +
T Consensus 141 n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~-l 210 (454)
T 1jl5_A 141 NQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKK-L 210 (454)
T ss_dssp SCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSS-C
T ss_pred CCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCc-C
Confidence 98886 66 58888899999999998884 56543 588999999998885 66 57889999999999998885 4
Q ss_pred CccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccc
Q 041562 334 PITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRL 413 (653)
Q Consensus 334 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 413 (653)
|... ++|++|++++|.+. .+| .+..+++|++|++++|+++.++. ..++|+.|++++|.+.+ +|.
T Consensus 211 ~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l~~-l~~---- 274 (454)
T 1jl5_A 211 PDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLTD-LPE---- 274 (454)
T ss_dssp CCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCSC-CCC----
T ss_pred CCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCcccc-cCc----
Confidence 4432 58999999999998 566 48899999999999999987664 24789999999999876 443
Q ss_pred cCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCC-CCCCEEEccCCcCcccCCccccCCC
Q 041562 414 TSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNM-SSLFHIDFSNNLISGEFPKEFCRLP 492 (653)
Q Consensus 414 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~ 492 (653)
..++|++|++++|++++ +|.. .++|++|++++|++.+ ++ .+ ++|++|++++|++++ +|.. ++
T Consensus 275 ----~~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~ 337 (454)
T 1jl5_A 275 ----LPQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PP 337 (454)
T ss_dssp ----CCTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred ----ccCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CC
Confidence 24789999999999986 2221 2689999999999985 22 23 589999999999985 4432 12
Q ss_pred CCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCC
Q 041562 493 ALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLT 572 (653)
Q Consensus 493 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~ 572 (653)
.|++|++++|+++ .+|. .++
T Consensus 338 --------------------------------------------------------~L~~L~L~~N~l~-~lp~---~l~ 357 (454)
T 1jl5_A 338 --------------------------------------------------------RLERLIASFNHLA-EVPE---LPQ 357 (454)
T ss_dssp --------------------------------------------------------TCCEEECCSSCCS-CCCC---CCT
T ss_pred --------------------------------------------------------cCCEEECCCCccc-cccc---hhh
Confidence 5677777777777 3555 356
Q ss_pred CCCeEeCCCCeeee--ecCcccccC-------------CCCCeeecCCCcccc--cCCCCCCCCCcCCCccCCCCCCC
Q 041562 573 NLERMDLSKNHLSG--EIPVSLKRL-------------HFLSAFNVAENNLRG--SIPSGGQFDTFPSSSFRGNPDLC 633 (653)
Q Consensus 573 ~L~~LdLs~N~l~~--~ip~~l~~l-------------~~L~~L~ls~N~l~g--~iP~~~~~~~~~~~~~~gn~~lc 633 (653)
+|++||+++|++++ .+|.++..+ ++|++|++++|+++| .||.. +....+.+|..-|
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s-----l~~L~~~~~~~~~ 430 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES-----VEDLRMNSERVVD 430 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh-----HhheeCcCcccCC
Confidence 77777777777776 667777666 889999999999998 78853 3344455554433
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.6e-39 Score=360.34 Aligned_cols=463 Identities=21% Similarity=0.226 Sum_probs=370.9
Q ss_pred CCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEE
Q 041562 74 GRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFN 152 (653)
Q Consensus 74 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~ 152 (653)
.+++.|+|++|.+++..+.+|.++++|++|+|++|++++..+..|.. ++|++|+|++|+++ .+|...+..+++|++|+
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELN 154 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeec
Confidence 47999999999999888889999999999999999999877777776 99999999999999 67777788899999999
Q ss_pred ccCCcCcccC-ChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCC----CEEEcccCCCCCCccccccCCCCCCEEec
Q 041562 153 VSNNSFTGLI-SWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRL----KTFRAGFNYLTGSLPDDIYTATSLEQLSL 227 (653)
Q Consensus 153 Ls~n~l~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 227 (653)
+++|.+++.. |..+. .+++|++|++++|++++..+..+..+.++ ..++++.|.+.. ++........++.+++
T Consensus 155 Ls~N~l~~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~~~~~~~~~~l~l 231 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTL 231 (635)
T ss_dssp CCSSCCCCCCCCGGGG--GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTTTTTCEEEEEEE
T ss_pred cccCccccCCCchhhc--cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc-cCcccccchhhhhhhh
Confidence 9999998753 44333 68999999999999998888877665544 478899998884 4444444556677777
Q ss_pred cCCcCccc-ccccccCCCCCcEEEccc------------------------------CcCC---cccCccccCCCCCCeE
Q 041562 228 SFNHISGS-IKNGIVNLTSLRILELYS------------------------------NSLT---GLIPRDIGKLTNLESL 273 (653)
Q Consensus 228 s~n~i~~~-~~~~l~~l~~L~~L~L~~------------------------------n~l~---~~~p~~l~~l~~L~~L 273 (653)
.+|..... .+..+..+..++...+.. +... ...+..+..+.+++.+
T Consensus 232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l 311 (635)
T 4g8a_A 232 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSF 311 (635)
T ss_dssp ESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEE
T ss_pred hcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccc
Confidence 77754422 223344455544444322 2111 1122344556788899
Q ss_pred EeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccc
Q 041562 274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL 353 (653)
Q Consensus 274 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 353 (653)
++.++.+... ..+.....|+.|++.+|.+.+ ++ ...++.|+.+++..|.+.... ....+++|+.+++++|.+
T Consensus 312 ~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~-~~---~~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 383 (635)
T 4g8a_A 312 SLVSVTIERV--KDFSYNFGWQHLELVNCKFGQ-FP---TLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGL 383 (635)
T ss_dssp EEESCEEEEC--GGGGSCCCCSEEEEESCEESS-CC---CCBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCC
T ss_pred cccccccccc--cccccchhhhhhhcccccccC-cC---cccchhhhhcccccccCCCCc--ccccccccccchhhcccc
Confidence 9998887743 346677899999999998873 33 235678999999999876432 355789999999999988
Q ss_pred c--ccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCc
Q 041562 354 E--GQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECK 431 (653)
Q Consensus 354 ~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~ 431 (653)
. +..+..+..+.+|+.+++..+....++ ..+..+++|+.+++..+......+.. .+..+++++.+++++|.
T Consensus 384 ~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~l~~l~~l~ls~n~ 456 (635)
T 4g8a_A 384 SFKGCCSQSDFGTISLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSEFS----VFLSLRNLIYLDISHTH 456 (635)
T ss_dssp BEEEECCHHHHSCSCCCEEECCSCSEEEEC---SCCTTCTTCCEEECTTSEEESTTSSC----TTTTCTTCCEEECTTSC
T ss_pred ccccccccchhhhhhhhhhhcccccccccc---ccccccccccchhhhhcccccccccc----ccccccccccccccccc
Confidence 5 345667788999999999999876544 34677899999999988776655432 34578999999999999
Q ss_pred CcccchhhhcCCccCCeeeCcCCcCc-cCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccccccccccccc
Q 041562 432 LKGQVPSWIGKLKKLQVLDLSFNQLT-GSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEF 510 (653)
Q Consensus 432 l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~ 510 (653)
+.+..+..+..++.|++|++++|++. +..|..+..+++|++|+|++|++++..|..|.+++
T Consensus 457 l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~------------------ 518 (635)
T 4g8a_A 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------------------ 518 (635)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT------------------
T ss_pred cccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCC------------------
Confidence 99989999999999999999999854 45788899999999999999999988888877665
Q ss_pred ccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCc
Q 041562 511 SLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPV 590 (653)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~ 590 (653)
+|++|+|++|+|++..|..|+.+++|++|||++|++++..|.
T Consensus 519 --------------------------------------~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 519 --------------------------------------SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp --------------------------------------TCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred --------------------------------------CCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 688999999999999999999999999999999999999999
Q ss_pred ccccC-CCCCeeecCCCccccc
Q 041562 591 SLKRL-HFLSAFNVAENNLRGS 611 (653)
Q Consensus 591 ~l~~l-~~L~~L~ls~N~l~g~ 611 (653)
.+..+ ++|++|++++|++...
T Consensus 561 ~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 561 ELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CTTCCCTTCCEEECTTCCBCCS
T ss_pred HHHhhhCcCCEEEeeCCCCccc
Confidence 99988 6899999999999763
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2e-37 Score=332.45 Aligned_cols=212 Identities=21% Similarity=0.273 Sum_probs=107.5
Q ss_pred cccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhc
Q 041562 91 SLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVD 169 (653)
Q Consensus 91 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 169 (653)
+..++++++|++|++++|.+++. | .++. ++|++|++++|.+++ +| +..+++|++|++++|.+++. + ..
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~----~~ 103 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D----VT 103 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C----CT
T ss_pred ccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e----cC
Confidence 33556667777777777776653 3 2333 566666666666653 33 33455555555555555553 1 12
Q ss_pred CCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEE
Q 041562 170 SFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL 249 (653)
Q Consensus 170 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 249 (653)
.+++|++|++++|.+++. + ++.+++|++|++++|.+++. + +..+++|++|++++|...+.+ .+..+++|++|
T Consensus 104 ~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 455555555555555542 2 55555555555555555542 1 445555555555555333232 24445555555
Q ss_pred EcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562 250 ELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF 329 (653)
Q Consensus 250 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 329 (653)
++++|++++. | ++.+++|+.|++++|++++. .++.+++|++|++++|.+++ +| +..+++|+.|++++|.+
T Consensus 176 ~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~N~l 245 (457)
T 3bz5_A 176 DCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSVNPL 245 (457)
T ss_dssp ECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCC
T ss_pred ECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeCCcC
Confidence 5555555442 2 44455555555555555432 24444555555555555443 32 34444455555555544
Q ss_pred cc
Q 041562 330 TG 331 (653)
Q Consensus 330 ~~ 331 (653)
++
T Consensus 246 ~~ 247 (457)
T 3bz5_A 246 TE 247 (457)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.9e-37 Score=330.16 Aligned_cols=362 Identities=17% Similarity=0.180 Sum_probs=245.9
Q ss_pred CCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCC
Q 041562 111 SGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP 189 (653)
Q Consensus 111 ~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 189 (653)
.+..+..++. ++|++|++++|.+++ +| . +..+++|++|++++|.+++. + ...+++|++|++++|.+++. +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~-~----~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL-D----LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC-C----CTTCTTCSEEECCSSCCSCC-C
T ss_pred CcccccChhHcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE-c----cccCCCCCEEECcCCCCcee-e
Confidence 3344444444 888888888888884 55 2 45688888888888888875 2 23678888888888888764 2
Q ss_pred ccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCC
Q 041562 190 LGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTN 269 (653)
Q Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 269 (653)
++.+++|++|++++|.+++ +| +..+++|++|++++|.+++. .++.+++|++|++++|+..+.+ .++.+++
T Consensus 102 --~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred --cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 7788888888888888875 44 77788888888888888763 3777888888888888655554 4677888
Q ss_pred CCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEcc
Q 041562 270 LESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLA 349 (653)
Q Consensus 270 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 349 (653)
|++|++++|++++ +| +..+++|++|++++|.+++ + .++.+++|++|++++|++++ +| +..+++|+.|+++
T Consensus 172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence 8888888888875 44 7777888888888888774 2 36677888888888888876 45 6777888888888
Q ss_pred CccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccC
Q 041562 350 RNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAE 429 (653)
Q Consensus 350 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 429 (653)
+|++++.. +..+++|+.|++++|++ +.+++++|.+.+.+|. ..+++|+.|++++
T Consensus 242 ~N~l~~~~---~~~l~~L~~L~l~~n~L----------------~~L~l~~n~~~~~~~~-------~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 242 VNPLTELD---VSTLSKLTTLHCIQTDL----------------LEIDLTHNTQLIYFQA-------EGCRKIKELDVTH 295 (457)
T ss_dssp SSCCSCCC---CTTCTTCCEEECTTCCC----------------SCCCCTTCTTCCEEEC-------TTCTTCCCCCCTT
T ss_pred CCcCCCcC---HHHCCCCCEEeccCCCC----------------CEEECCCCccCCcccc-------cccccCCEEECCC
Confidence 88887643 34567777777766543 3445556655554442 3456777777777
Q ss_pred CcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccc
Q 041562 430 CKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLE 509 (653)
Q Consensus 430 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~ 509 (653)
|...+.+|. ..++|+.|++++| ++|++|++++|++++. + +..++
T Consensus 296 n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~----------------- 339 (457)
T 3bz5_A 296 NTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNT----------------- 339 (457)
T ss_dssp CTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCT-----------------
T ss_pred Ccccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCC-----------------
Confidence 776666653 2344455544443 5677777777777652 2 33332
Q ss_pred cccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecC
Q 041562 510 FSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIP 589 (653)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip 589 (653)
.|+.|++++|++++ ++.|+.|++++|.++|.
T Consensus 340 ---------------------------------------~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-- 370 (457)
T 3bz5_A 340 ---------------------------------------KLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-- 370 (457)
T ss_dssp ---------------------------------------TCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE--
T ss_pred ---------------------------------------cCcEEECCCCCCCC--------ccccccccccCCcEEec--
Confidence 46666666666664 23455556666666654
Q ss_pred cccccCCCCCeeecCCCcccccCCCC
Q 041562 590 VSLKRLHFLSAFNVAENNLRGSIPSG 615 (653)
Q Consensus 590 ~~l~~l~~L~~L~ls~N~l~g~iP~~ 615 (653)
..+..|..+++++|+++|.||..
T Consensus 371 ---~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 371 ---GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp ---EEEEECCCBCCBTTBEEEECCTT
T ss_pred ---ceeeecCccccccCcEEEEcChh
Confidence 23445566667777777777653
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.1e-36 Score=325.62 Aligned_cols=344 Identities=27% Similarity=0.398 Sum_probs=187.6
Q ss_pred CCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEE
Q 041562 146 QNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQL 225 (653)
Q Consensus 146 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 225 (653)
++++.|+++++.+..... ...+++|++|++++|.+++..+ +.++++|++|++++|.+++..+ +.++++|++|
T Consensus 46 ~~l~~L~l~~~~i~~l~~----~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDG----VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred ccccEEecCCCCCccCcc----hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 344555555554443221 1134555555555555553322 5555555555555555553322 5555566666
Q ss_pred eccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCc
Q 041562 226 SLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFE 305 (653)
Q Consensus 226 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 305 (653)
++++|.+.+..+ +.++++|++|++++|.+.+. + .++.+++|++|++++ .+.+. ..+.++++|++|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCC
Confidence 666655553322 55556666666666655542 2 355566666666642 33322 12555666666666666555
Q ss_pred cccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchh
Q 041562 306 GDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIR 385 (653)
Q Consensus 306 ~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 385 (653)
.++ .+..+++|++|++++|.+++..+ ++.+++|++|++++|.+.+. +.+..+++|++|++++|.++.++.
T Consensus 191 -~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--- 260 (466)
T 1o6v_A 191 -DIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--- 260 (466)
T ss_dssp -CCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---
T ss_pred -CCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---
Confidence 222 34555666666666666554333 44556666666666665532 245556666666666666554332
Q ss_pred hccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhc
Q 041562 386 ILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLG 465 (653)
Q Consensus 386 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 465 (653)
+..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|++|++++|++.+..| +.
T Consensus 261 -~~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 328 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQISNISP-------LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS 328 (466)
T ss_dssp -GTTCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG
T ss_pred -hhcCCCCCEEECCCCccCcccc-------ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc
Confidence 4445555555555555443221 2345666666666666664333 5566666666666666665544 55
Q ss_pred CCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHh
Q 041562 466 NMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSL 545 (653)
Q Consensus 466 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~ 545 (653)
.+++|++|++++|++++. ..+..++
T Consensus 329 ~l~~L~~L~l~~n~l~~~--~~l~~l~----------------------------------------------------- 353 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDV--SSLANLT----------------------------------------------------- 353 (466)
T ss_dssp GCTTCCEEECCSSCCCCC--GGGTTCT-----------------------------------------------------
T ss_pred cCccCCEeECCCCccCCc--hhhccCC-----------------------------------------------------
Confidence 666666666666666543 1222221
Q ss_pred HHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeee
Q 041562 546 LRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSG 586 (653)
Q Consensus 546 l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~ 586 (653)
.|+.|++++|++++..| +..+++|+.|++++|.+++
T Consensus 354 ---~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 354 ---NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ---TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ---CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 56667777777766655 6667777777777777764
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.3e-36 Score=326.52 Aligned_cols=346 Identities=25% Similarity=0.347 Sum_probs=296.2
Q ss_pred CCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEE
Q 041562 170 SFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL 249 (653)
Q Consensus 170 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 249 (653)
.++++++|+++++.+.. +| .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 35789999999999874 44 48889999999999999996544 8999999999999999986554 9999999999
Q ss_pred EcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562 250 ELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF 329 (653)
Q Consensus 250 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 329 (653)
++++|.+++..+ +..+++|++|++++|.+.+ ++ .+..+++|++|+++ |.+.+ ++ .+..+++|++|++++|.+
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~-~~--~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTD-LK--PLANLTTLERLDISSNKV 189 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCC-CG--GGTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccC-ch--hhccCCCCCEEECcCCcC
Confidence 999999997633 8999999999999999985 34 58999999999997 44542 33 488999999999999999
Q ss_pred cccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCC
Q 041562 330 TGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPD 409 (653)
Q Consensus 330 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 409 (653)
++. ..+..+++|++|++++|.+.+..+ ++.+++|++|++++|.++.+ ..+..+++|+.|++++|.+.+..+
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI----GTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc----hhhhcCCCCCEEECCCCccccchh-
Confidence 853 358889999999999999987655 77899999999999999865 357788999999999999876543
Q ss_pred cccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCcccc
Q 041562 410 NDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFC 489 (653)
Q Consensus 410 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 489 (653)
+..+++|++|++++|.+++..+ +..+++|++|++++|++.+..+ +..+++|++|++++|++++..| +.
T Consensus 261 ------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 328 (466)
T 1o6v_A 261 ------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS 328 (466)
T ss_dssp ------GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG
T ss_pred ------hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc
Confidence 3578999999999999996544 8889999999999999987544 7889999999999999986544 22
Q ss_pred CCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccc
Q 041562 490 RLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQIS 569 (653)
Q Consensus 490 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~ 569 (653)
.++ .|+.|++++|.+++. ..+.
T Consensus 329 ~l~--------------------------------------------------------~L~~L~l~~n~l~~~--~~l~ 350 (466)
T 1o6v_A 329 SLT--------------------------------------------------------KLQRLFFYNNKVSDV--SSLA 350 (466)
T ss_dssp GCT--------------------------------------------------------TCCEEECCSSCCCCC--GGGT
T ss_pred cCc--------------------------------------------------------cCCEeECCCCccCCc--hhhc
Confidence 222 789999999999975 4789
Q ss_pred cCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcccc
Q 041562 570 QLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRG 610 (653)
Q Consensus 570 ~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g 610 (653)
++++|++|++++|++++..| +..+++|++|++++|++++
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999999999999998877 8999999999999999997
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.2e-37 Score=333.76 Aligned_cols=347 Identities=23% Similarity=0.234 Sum_probs=194.4
Q ss_pred CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccC
Q 041562 175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSN 254 (653)
Q Consensus 175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 254 (653)
+.++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|+|++|.+.+..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45566655555 3343332 34555555555555444444555555555555555555444445555555555555555
Q ss_pred cCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCC
Q 041562 255 SLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLP 334 (653)
Q Consensus 255 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 334 (653)
++++..+..|+++++|++|+|++|++.+..+..+..++ +|++|++++|.+++..+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-------------------------~L~~L~l~~n~l~~~~~ 145 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-------------------------NLKSLEVGDNDLVYISH 145 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-------------------------TCCEEEECCTTCCEECT
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccc-------------------------cCCEEECCCCccceeCh
Confidence 55443333444455555555555554444444444444 44444444444444444
Q ss_pred ccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCccccc
Q 041562 335 ITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLT 414 (653)
Q Consensus 335 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~ 414 (653)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++.++. ..+..+++|+.|++++|...+.++....
T Consensus 146 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~-- 221 (477)
T 2id5_A 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTPNCL-- 221 (477)
T ss_dssp TSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEECTTTT--
T ss_pred hhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCccccccCcccc--
Confidence 444555555555555555544444445555555555555555443322 1233444444444444443333333221
Q ss_pred CCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 041562 415 SANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPAL 494 (653)
Q Consensus 415 ~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 494 (653)
...+|++|++++|++++..+..+..+++|++|+|++|++.+..+..+..+++|++|++++|++++..|..|..++
T Consensus 222 ---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-- 296 (477)
T 2id5_A 222 ---YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN-- 296 (477)
T ss_dssp ---TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT--
T ss_pred ---cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcc--
Confidence 234788888888888755556777788888888888888777777777888888888888888776666665543
Q ss_pred CcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCC
Q 041562 495 TPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNL 574 (653)
Q Consensus 495 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L 574 (653)
.|+.|+|++|.+++..+..|..+++|
T Consensus 297 ------------------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L 322 (477)
T 2id5_A 297 ------------------------------------------------------YLRVLNVSGNQLTTLEESVFHSVGNL 322 (477)
T ss_dssp ------------------------------------------------------TCCEEECCSSCCSCCCGGGBSCGGGC
T ss_pred ------------------------------------------------------cCCEEECCCCcCceeCHhHcCCCccc
Confidence 57778888888887777777788888
Q ss_pred CeEeCCCCeeeeecCcccccCCCCCeeecCCCcccccCC
Q 041562 575 ERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP 613 (653)
Q Consensus 575 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP 613 (653)
++|+|++|.+....+.. .-...+..+++..+.....-|
T Consensus 323 ~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 323 ETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBEEES
T ss_pred CEEEccCCCccCccchH-hHHhhhhccccCccCceeCCc
Confidence 88888888887543211 112223334455554444334
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.4e-35 Score=310.06 Aligned_cols=310 Identities=22% Similarity=0.228 Sum_probs=232.2
Q ss_pred CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCE
Q 041562 121 NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKT 200 (653)
Q Consensus 121 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 200 (653)
+++++|++++|.++ .+|..++..+++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..++++++|++
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhcc--CCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 44555555555555 67777777788888888888888776654443 6788888888888888777777888888888
Q ss_pred EEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcC
Q 041562 201 FRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSL 280 (653)
Q Consensus 201 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 280 (653)
|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++. .++.+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 88888888743333457788888888888888877777788888888888888888754 356677888888888877
Q ss_pred cccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchh
Q 041562 281 SGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG 360 (653)
Q Consensus 281 ~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 360 (653)
++ +...++|++|++++|.+.. ++. ...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~-~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINV-VRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCE-EEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cc-----cCCCCcceEEECCCCeeee-ccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 63 2334578888888887763 332 2346788888888887753 46777788888888888887777777
Q ss_pred hcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhh
Q 041562 361 IVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWI 440 (653)
Q Consensus 361 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 440 (653)
+..+++|++|++++|+++.++.. ...+++|++|++++|+++ .+|..+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~--------------------------------~~~l~~L~~L~L~~n~l~-~~~~~~ 314 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVALNLY--------------------------------GQPIPTLKVLDLSHNHLL-HVERNQ 314 (390)
T ss_dssp GTTCSSCCEEECCSSCCCEEECS--------------------------------SSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred ccccccCCEEECCCCcCcccCcc--------------------------------cCCCCCCCEEECCCCcce-ecCccc
Confidence 77788888888888777643321 124678999999999988 577778
Q ss_pred cCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCccc
Q 041562 441 GKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGE 483 (653)
Q Consensus 441 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 483 (653)
..+++|++|++++|++++. + +..+++|++|++++|++.+.
T Consensus 315 ~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 315 PQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp HHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred cccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 8899999999999999854 3 67889999999999998764
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-35 Score=310.89 Aligned_cols=336 Identities=22% Similarity=0.210 Sum_probs=223.9
Q ss_pred CCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEE
Q 041562 195 CSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLV 274 (653)
Q Consensus 195 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 274 (653)
++++++++++++.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..|..++.+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45666777776666633223345666666666666666655555666666666666666666655555566666666666
Q ss_pred eecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccc
Q 041562 275 LHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE 354 (653)
Q Consensus 275 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 354 (653)
+++|.++...+..+.++++|++|++++|.+++ ++...+..+++|++|++++|.+++. .+..+++|+.|++++|.++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 66666653333334556666666666665553 2223455555555555555555532 1333445555555555444
Q ss_pred ccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcc
Q 041562 355 GQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG 434 (653)
Q Consensus 355 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 434 (653)
+. ...++ |+.|++++|.+..... ..+++|++|++++|.+++
T Consensus 200 ~~-----~~~~~--------------------------L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 200 TL-----AIPIA--------------------------VEELDASHNSINVVRG--------PVNVELTILKLQHNNLTD 240 (390)
T ss_dssp EE-----ECCSS--------------------------CSEEECCSSCCCEEEC--------CCCSSCCEEECCSSCCCC
T ss_pred cc-----CCCCc--------------------------ceEEECCCCeeeeccc--------cccccccEEECCCCCCcc
Confidence 21 12234 4444444444433211 124689999999999985
Q ss_pred cchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccccccccccccccccc
Q 041562 435 QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFK 514 (653)
Q Consensus 435 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 514 (653)
. ..+..+++|++|++++|++.+..|..+..+++|++|++++|++++ +|..+..++
T Consensus 241 ~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~---------------------- 295 (390)
T 3o6n_A 241 T--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP---------------------- 295 (390)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT----------------------
T ss_pred c--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCC----------------------
Confidence 3 578889999999999999998889999999999999999999874 333222221
Q ss_pred CCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCccccc
Q 041562 515 GSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKR 594 (653)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~ 594 (653)
+|++|+|++|+++ .+|..+..+++|++|+|++|++++ +| +..
T Consensus 296 ----------------------------------~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~ 337 (390)
T 3o6n_A 296 ----------------------------------TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LST 337 (390)
T ss_dssp ----------------------------------TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCT
T ss_pred ----------------------------------CCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chh
Confidence 7899999999999 577788999999999999999984 44 678
Q ss_pred CCCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCCCCC
Q 041562 595 LHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIV 637 (653)
Q Consensus 595 l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~ 637 (653)
+++|++|++++|++.+.-. ...+..+....+.+++..|+.+.
T Consensus 338 ~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 338 HHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp TCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTTC
T ss_pred hccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceecccc
Confidence 8999999999999987422 23466677778899999998653
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4e-35 Score=326.54 Aligned_cols=335 Identities=22% Similarity=0.221 Sum_probs=239.5
Q ss_pred CCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEE
Q 041562 195 CSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLV 274 (653)
Q Consensus 195 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 274 (653)
+.+++.+++++|.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45677777777777644444456677777777777777766666777777777777777777766666667777777777
Q ss_pred eecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccc
Q 041562 275 LHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE 354 (653)
Q Consensus 275 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 354 (653)
|++|.+++..+..|.++++|++|++++|.+++..+ ..+..+++|++|++++|.+++. .+..+++|+.|++++|.++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 77777764444445666666666666666664333 3556666666666666666542 1344555666666665554
Q ss_pred ccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcc
Q 041562 355 GQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG 434 (653)
Q Consensus 355 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 434 (653)
+. ...++|+.|++++|.++.++. . ..++|+.|++++|.+++
T Consensus 206 ~l-----~~~~~L~~L~ls~n~l~~~~~--------------------------~--------~~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 206 TL-----AIPIAVEELDASHNSINVVRG--------------------------P--------VNVELTILKLQHNNLTD 246 (597)
T ss_dssp EE-----ECCTTCSEEECCSSCCCEEEC--------------------------S--------CCSCCCEEECCSSCCCC
T ss_pred cc-----cCCchhheeeccCCccccccc--------------------------c--------cCCCCCEEECCCCCCCC
Confidence 31 223445555555555443221 1 23579999999999985
Q ss_pred cchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccccccccccccccccc
Q 041562 435 QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFK 514 (653)
Q Consensus 435 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 514 (653)
+..+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|++++ +|..+..++
T Consensus 247 --~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~---------------------- 301 (597)
T 3oja_B 247 --TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP---------------------- 301 (597)
T ss_dssp --CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT----------------------
T ss_pred --ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC----------------------
Confidence 4678899999999999999999999999999999999999999985 333332222
Q ss_pred CCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCccccc
Q 041562 515 GSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKR 594 (653)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~ 594 (653)
.|+.|+|++|.++ .+|..+..+++|++|+|++|.+++. | +..
T Consensus 302 ----------------------------------~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~ 343 (597)
T 3oja_B 302 ----------------------------------TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST 343 (597)
T ss_dssp ----------------------------------TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred ----------------------------------CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhh
Confidence 7899999999999 6888899999999999999999854 3 677
Q ss_pred CCCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCCCC
Q 041562 595 LHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAI 636 (653)
Q Consensus 595 l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~ 636 (653)
+++|++|++++|++.+..+. ..+..+....+.+++..|+.+
T Consensus 344 ~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp TCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred cCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 89999999999999876432 356777788899999999874
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=313.41 Aligned_cols=322 Identities=20% Similarity=0.208 Sum_probs=184.0
Q ss_pred CEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEc
Q 041562 124 KIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRA 203 (653)
Q Consensus 124 ~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 203 (653)
+.++.+++.++ .+|..+ .+++++|++++|.+++..+..+. .+++|++|++++|.+++..|..|.++++|++|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFA--SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHcc--CCCCCCEEECCCCccCEeChhhhhCCccCCEEEC
Confidence 46677777776 666543 24566666666666655444332 4556666666666555555555555555555555
Q ss_pred ccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCccc
Q 041562 204 GFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGS 283 (653)
Q Consensus 204 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 283 (653)
++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 55555543333445555555555555555554455555555555555555555555455555555555555555555543
Q ss_pred CCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcC
Q 041562 284 LPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA 363 (653)
Q Consensus 284 ~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 363 (653)
.+..+.++++|+.|++++|.+.+ ++...+..+++|++|++++|.+.+.++.......+|++|++++|.+++..+..+..
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 246 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred ChhHhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence 33344555555555555555542 22234444555555555554444444444333344455555554444332233444
Q ss_pred CCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCC
Q 041562 364 LKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKL 443 (653)
Q Consensus 364 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 443 (653)
+++|+.|++++|.+.+..+. .+..+++|++|++++|++++..|..|..+
T Consensus 247 --------------------------l~~L~~L~Ls~n~l~~~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 247 --------------------------LVYLRFLNLSYNPISTIEGS-----MLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp --------------------------CTTCCEEECCSSCCCEECTT-----SCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred --------------------------ccccCeeECCCCcCCccChh-----hccccccCCEEECCCCccceECHHHhcCc
Confidence 44455555555544433322 12456778888888888887777778888
Q ss_pred ccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCccc
Q 041562 444 KKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGE 483 (653)
Q Consensus 444 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 483 (653)
++|++|++++|++++..+..|..+++|++|++++|++...
T Consensus 296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 8888888888888876666777788888888888887643
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.9e-34 Score=318.53 Aligned_cols=312 Identities=22% Similarity=0.219 Sum_probs=238.5
Q ss_pred CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCE
Q 041562 121 NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKT 200 (653)
Q Consensus 121 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 200 (653)
++++.+++++|.+. .+|..++..+++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..|+++++|++
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFA--YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhc--CCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 44555555555555 67777777788888888888888877665543 6788888888888888877777888888888
Q ss_pred EEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcC
Q 041562 201 FRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSL 280 (653)
Q Consensus 201 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 280 (653)
|++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. .++.+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 88888888855445567888888888888888877777888888888888888888765 356678888888888877
Q ss_pred cccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchh
Q 041562 281 SGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG 360 (653)
Q Consensus 281 ~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 360 (653)
++ +...++|+.|++++|.+.. ++. ...++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~-~~~---~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINV-VRG---PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCE-EEC---SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cc-----ccCCchhheeeccCCcccc-ccc---ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence 64 2344678888888888763 332 123678888888888875 356777888888888888888877888
Q ss_pred hcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhh
Q 041562 361 IVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWI 440 (653)
Q Consensus 361 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 440 (653)
+..+++|++|++++|.++.++.. ...+++|+.|+|++|.++ .+|..+
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~l~~~--------------------------------~~~l~~L~~L~Ls~N~l~-~i~~~~ 320 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVALNLY--------------------------------GQPIPTLKVLDLSHNHLL-HVERNQ 320 (597)
T ss_dssp GTTCSSCCEEECTTSCCCEEECS--------------------------------SSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred hcCccCCCEEECCCCCCCCCCcc--------------------------------cccCCCCcEEECCCCCCC-ccCccc
Confidence 88888888888888877644321 124678889999999888 677788
Q ss_pred cCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCC
Q 041562 441 GKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFP 485 (653)
Q Consensus 441 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 485 (653)
..+++|++|++++|++.+. + +..+++|++|++++|++.+...
T Consensus 321 ~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 321 PQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp HHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred ccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence 8899999999999999854 3 6778899999999999876533
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.4e-35 Score=299.85 Aligned_cols=164 Identities=29% Similarity=0.553 Sum_probs=131.7
Q ss_pred CCcCEEEccCCcCcccchhhhcCCc-cCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccc
Q 041562 420 KNLQVLGLAECKLKGQVPSWIGKLK-KLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQ 498 (653)
Q Consensus 420 ~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 498 (653)
++|++|++++|++++.+|..+..++ +|++|++++|++.+.+|..+..++ |++|++++|++++..|..+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~------ 221 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDK------ 221 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTS------
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCC------
Confidence 3444445555555555666666666 777777777777777777777776 88888888888777776665543
Q ss_pred ccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEe
Q 041562 499 DKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMD 578 (653)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~Ld 578 (653)
.|+.|+|++|.+++.+|. +..+++|++||
T Consensus 222 --------------------------------------------------~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~ 250 (313)
T 1ogq_A 222 --------------------------------------------------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLD 250 (313)
T ss_dssp --------------------------------------------------CCSEEECCSSEECCBGGG-CCCCTTCCEEE
T ss_pred --------------------------------------------------CCCEEECCCCceeeecCc-ccccCCCCEEE
Confidence 677888888888876665 78889999999
Q ss_pred CCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCCCCCCCCCC
Q 041562 579 LSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSCS 642 (653)
Q Consensus 579 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~~~~c~ 642 (653)
|++|++++.+|..+..+++|++|++++|+++|.+|..+++.++....+.|||++||.|+. .|.
T Consensus 251 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C~ 313 (313)
T 1ogq_A 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-ACT 313 (313)
T ss_dssp CCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred CcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-CCC
Confidence 999999999999999999999999999999999999988999999999999999999874 674
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=8.1e-33 Score=287.15 Aligned_cols=263 Identities=26% Similarity=0.368 Sum_probs=145.3
Q ss_pred ccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCc
Q 041562 240 IVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKL 319 (653)
Q Consensus 240 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L 319 (653)
+..+++|++|++++|.+++. +.+..+++|++|++++|.+.+. +. +..+++|++|++++|.....++ .+..+++|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L 157 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS--PLSNMTGL 157 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG--GGTTCTTC
T ss_pred hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc--chhhCCCC
Confidence 33344444444444443321 1234444444444444444322 11 3444444444444443332222 24444444
Q ss_pred CEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECC
Q 041562 320 RVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIP 399 (653)
Q Consensus 320 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~ 399 (653)
++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|.++.++.
T Consensus 158 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----------------- 216 (347)
T 4fmz_A 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP----------------- 216 (347)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-----------------
T ss_pred cEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-----------------
Confidence 444444444442211 3444445555555544442211 4444555555555554443221
Q ss_pred CCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCc
Q 041562 400 LNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNL 479 (653)
Q Consensus 400 ~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 479 (653)
+..+++|++|++++|.+++..+ +..+++|++|++++|++.+. ..+..+++|++|++++|+
T Consensus 217 ----------------~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 217 ----------------VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQ 276 (347)
T ss_dssp ----------------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred ----------------hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCc
Confidence 1244566667777776664333 66777777778877777743 357777888888888887
Q ss_pred CcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCcc
Q 041562 480 ISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNN 559 (653)
Q Consensus 480 l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~ 559 (653)
+++. + .+..+ + .|+.|++++|.
T Consensus 277 l~~~-~-~~~~l-------------------------------------------------------~-~L~~L~L~~n~ 298 (347)
T 4fmz_A 277 ISDI-S-VLNNL-------------------------------------------------------S-QLNSLFLNNNQ 298 (347)
T ss_dssp CCCC-G-GGGGC-------------------------------------------------------T-TCSEEECCSSC
T ss_pred cCCC-h-hhcCC-------------------------------------------------------C-CCCEEECcCCc
Confidence 7642 1 12221 1 67888888888
Q ss_pred CccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCccc
Q 041562 560 FSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR 609 (653)
Q Consensus 560 l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 609 (653)
+++..|..++.+++|++|++++|++++..| +..++.|++|++++|+++
T Consensus 299 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888888888888888888888888886655 777888888888888775
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.5e-32 Score=282.38 Aligned_cols=260 Identities=25% Similarity=0.360 Sum_probs=135.4
Q ss_pred CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE 250 (653)
Q Consensus 171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 250 (653)
+++|++|++++|.++.. ..+..+++|++|++++|.+++. +. +..+++|++|++++|.....+ ..+..+++|++|+
T Consensus 87 l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~ 161 (347)
T 4fmz_A 87 LVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLT 161 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEE
T ss_pred CCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEE
Confidence 44444444444444321 1344444444444444444422 21 444444444444444333222 2244444444444
Q ss_pred cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562 251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330 (653)
Q Consensus 251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 330 (653)
+++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.++
T Consensus 162 l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~--~~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 162 VTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITD-IT--PVANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp CCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCCEEECCSSCCC
T ss_pred ecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCC-Cc--hhhcCCcCCEEEccCCccC
Confidence 44444443321 44444444454444444422 11 4444444444444444442 11 1334444444444444444
Q ss_pred ccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCc
Q 041562 331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDN 410 (653)
Q Consensus 331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 410 (653)
+..+ +..+++|++|++++|.+++. +.+..+++|++|++++|.++.++
T Consensus 235 ~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~----------------------------- 281 (347)
T 4fmz_A 235 DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS----------------------------- 281 (347)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-----------------------------
T ss_pred CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh-----------------------------
Confidence 2211 34444444444444444421 23444444444444444443221
Q ss_pred ccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCc
Q 041562 411 DRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481 (653)
Q Consensus 411 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 481 (653)
.+..+++|++|++++|.+++..|..+..+++|++|++++|++++..| +..+++|++|++++|.|+
T Consensus 282 ----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 282 ----VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp ----GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ----hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 12356889999999999988888889999999999999999987666 788999999999999875
No 43
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=4.7e-34 Score=293.14 Aligned_cols=266 Identities=18% Similarity=0.176 Sum_probs=169.6
Q ss_pred CCcCCHHhHHHHHHhhhcCCCCC----CCC----CCCCCCccccceEeC---------CCCCEEEEEcCCCCcceecccc
Q 041562 31 CQACNQIDQDSLLSLGFNISSPG----LNW----SSSTDCCLWEGIKCD---------ANGRVSHLWLPWKGLTGTISLS 93 (653)
Q Consensus 31 ~~~~~~~~~~~ll~~k~~~~~~~----~~W----~~~~~~c~w~gv~c~---------~~~~v~~L~L~~~~l~g~~~~~ 93 (653)
..++..+|++||++||+++..+. .+| ....++|.|.|+.|+ ..++|+.|+|+++.++ .+|+.
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 34556789999999999884333 567 346789999999995 2478999999999998 78888
Q ss_pred ccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhh----
Q 041562 94 IGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWV---- 168 (653)
Q Consensus 94 l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---- 168 (653)
++++++|++|+|++|.++ .+|..++. ++|++|+|++|.++ .+|..+ ..+++|++|++++|++.+.+|..+..
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~ 176 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELPEPLASTDAS 176 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEEECCCCCCccccChhHhhccch
Confidence 999999999999999998 78887776 88999999999888 788764 45788888888887777776654421
Q ss_pred ---cCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCC
Q 041562 169 ---DSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTS 245 (653)
Q Consensus 169 ---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~ 245 (653)
..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..++.+++
T Consensus 177 ~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 177 GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254 (328)
T ss_dssp CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence 12445555555555554 44444455555555555555544 23334444445555555554444444444444444
Q ss_pred CcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCC
Q 041562 246 LRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN 302 (653)
Q Consensus 246 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 302 (653)
|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++++++|+.+++..+
T Consensus 255 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 444544444444444444444444444444444444444444444444444444443
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.5e-31 Score=275.70 Aligned_cols=294 Identities=21% Similarity=0.275 Sum_probs=170.5
Q ss_pred CCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEee
Q 041562 197 RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLH 276 (653)
Q Consensus 197 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 276 (653)
+++.++++++.++ .+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|++++..|..|+++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5666666666665 455544 2466666666666665555566666666666666666665556666666666666666
Q ss_pred cCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccc--cCCccCcCCCCCCeEEccCcccc
Q 041562 277 NNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG--SLPITLNSCKSLTAVNLARNQLE 354 (653)
Q Consensus 277 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 354 (653)
+|.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|.++. ..+..+..+ +|++|++++|.++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 66665 3444333 55666666666555 3333345555555555555555532 334444444 4555555555444
Q ss_pred ccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcc
Q 041562 355 GQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKG 434 (653)
Q Consensus 355 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 434 (653)
+ +|..+. ++|++|+++ +|.+.+..+. .+..+++|++|++++|++++
T Consensus 186 ~-l~~~~~--~~L~~L~l~--------------------------~n~i~~~~~~-----~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLD--------------------------HNKIQAIELE-----DLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp S-CCSSSC--SSCSCCBCC--------------------------SSCCCCCCTT-----SSTTCTTCSCCBCCSSCCCC
T ss_pred c-cCcccc--CCCCEEECC--------------------------CCcCCccCHH-----HhcCCCCCCEEECCCCcCCc
Confidence 2 222221 334444444 4433333222 12356777777777777776
Q ss_pred cchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccccccccccccccccc
Q 041562 435 QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFK 514 (653)
Q Consensus 435 ~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~ 514 (653)
..+..+..+++|++|++++|++. .+|..+..+++|++|++++|++++..+..|........
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~------------------ 292 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK------------------ 292 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS------------------
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccc------------------
Confidence 66667777777888888888777 66666777777888888888777655555543211000
Q ss_pred CCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCc--cccccccccCCCCCeEeCCCCe
Q 041562 515 GSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFS--GNIPDQISQLTNLERMDLSKNH 583 (653)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~LdLs~N~ 583 (653)
.. .|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 293 -------------------------------~~-~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 -------------------------------RA-YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -------------------------------SC-CBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred -------------------------------cc-cccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 00 5677777777776 5566777777777777777764
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=4.7e-31 Score=271.72 Aligned_cols=253 Identities=25% Similarity=0.342 Sum_probs=141.5
Q ss_pred CCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEee
Q 041562 197 RLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLH 276 (653)
Q Consensus 197 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 276 (653)
+++.++++++.++ .+|..+. +.+++|++++|.+++..+..+.++++|++|++++|++++..|..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5666666666665 4454432 456666666666665555556666666666666666665555566666666666666
Q ss_pred cCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccccc
Q 041562 277 NNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQ 356 (653)
Q Consensus 277 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 356 (653)
+|.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|.+.. .+.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~ 162 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKS----------------------SGI 162 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCG----------------------GGB
T ss_pred CCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCc----------------------cCc
Confidence 66655 3443332 45555555555555 2333344555555555555555432 113
Q ss_pred CchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccc
Q 041562 357 ISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQV 436 (653)
Q Consensus 357 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 436 (653)
.+..+..+++|++|++++|.++.++..+ .++|++|++++|.+.+..+.. +..+++|++|++++|.+++..
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~-----~~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~ 232 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITTIPQGL-----PPSLTELHLDGNKITKVDAAS-----LKGLNNLAKLGLSFNSISAVD 232 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCSCCSSC-----CTTCSEEECTTSCCCEECTGG-----GTTCTTCCEEECCSSCCCEEC
T ss_pred ChhhccCCCCcCEEECCCCccccCCccc-----cccCCEEECCCCcCCccCHHH-----hcCCCCCCEEECCCCcCceeC
Confidence 3344444555555555555554433211 133444444444443332221 235566777777777777655
Q ss_pred hhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCcccc
Q 041562 437 PSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFC 489 (653)
Q Consensus 437 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 489 (653)
+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 233 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp TTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred hhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 656667777777777777776 5666667777777777777777655444443
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=9.1e-31 Score=269.80 Aligned_cols=201 Identities=21% Similarity=0.231 Sum_probs=105.1
Q ss_pred CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcc
Q 041562 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY 252 (653)
Q Consensus 173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 252 (653)
+|++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 4444555555444444444555555555555555555444455555555555555555554 3333332 455555555
Q ss_pred cCcCCcccCccccCCCCCCeEEeecCcCc--ccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562 253 SNSLTGLIPRDIGKLTNLESLVLHNNSLS--GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330 (653)
Q Consensus 253 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 330 (653)
+|++++..+..++.+++|++|++++|.++ +..+..+..+ +|++|++++|.+++ +|. .+ .++|++|++++|.++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~-~~--~~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPK-DL--PETLNELHLDHNKIQ 206 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCS-SS--CSSCSCCBCCSSCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCc-cc--cCCCCEEECCCCcCC
Confidence 55555444444555555555555555553 2344444444 55555555555552 332 11 145556666666665
Q ss_pred ccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCC
Q 041562 331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNIT 381 (653)
Q Consensus 331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 381 (653)
+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++.++
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp 257 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP 257 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC
Confidence 555555555666666666666665555555555666666666666555443
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.1e-34 Score=311.16 Aligned_cols=339 Identities=20% Similarity=0.135 Sum_probs=184.5
Q ss_pred cCCCCcEEEccCCcCcccCChhhhhcCCC----CCCEEEccCCcCcc----CCCccCCCCCCCCEEEcccCCCCCCcccc
Q 041562 144 LTQNLITFNVSNNSFTGLISWSAWVDSFC----SIRHLDLSNNRFTG----PVPLGLGSCSRLKTFRAGFNYLTGSLPDD 215 (653)
Q Consensus 144 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~----~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 215 (653)
.+++|++|++++|.+.+..+..+.. .++ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 132 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQ-GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHH-TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHH-HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence 3455555555555554432222211 222 46666666666553 33555666666666666666665433322
Q ss_pred cc-----CCCCCCEEeccCCcCccc----ccccccCCCCCcEEEcccCcCCcccCcccc-----CCCCCCeEEeecCcCc
Q 041562 216 IY-----TATSLEQLSLSFNHISGS----IKNGIVNLTSLRILELYSNSLTGLIPRDIG-----KLTNLESLVLHNNSLS 281 (653)
Q Consensus 216 l~-----~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~ 281 (653)
+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.++
T Consensus 133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 22 244567777777666643 244455566777777777766544333332 2456777777777666
Q ss_pred cc----CCccccCCCCCcEEEccCCcCcccc----ChhhccCCCCcCEEEccCCccccc----CCccCcCCCCCCeEEcc
Q 041562 282 GS----LPSSLKNCINLTLLNLQSNFFEGDI----SVFNFSTLLKLRVLDLGSNLFTGS----LPITLNSCKSLTAVNLA 349 (653)
Q Consensus 282 ~~----~p~~l~~l~~L~~L~L~~n~l~~~i----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~ 349 (653)
+. ++..+..+++|++|++++|.+++.. ....+..+++|++|++++|.+++. ++..+..+++|++|+++
T Consensus 213 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 292 (461)
T 1z7x_W 213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292 (461)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECC
Confidence 42 3455566677777777777665321 111223466777777777776643 45555566777777777
Q ss_pred CccccccCchhhcC-----CCCCCEEECCCCCCCCCCc--chhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCc
Q 041562 350 RNQLEGQISPGIVA-----LKSLSFLSLSNNSLTNITG--AIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNL 422 (653)
Q Consensus 350 ~n~l~~~~~~~l~~-----l~~L~~L~Ls~n~l~~~~~--~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L 422 (653)
+|.+.+..+..+.. .++|++|++++|.++.... ....+..+++|+.|++++|.+.+..+...........++|
T Consensus 293 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L 372 (461)
T 1z7x_W 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL 372 (461)
T ss_dssp TCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred CCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCce
Confidence 77765443333322 2567777777776653211 1123444556666666666554332211110000114567
Q ss_pred CEEEccCCcCcc----cchhhhcCCccCCeeeCcCCcCccCCchhhc-----CCCCCCEEEccCCcCccc
Q 041562 423 QVLGLAECKLKG----QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLG-----NMSSLFHIDFSNNLISGE 483 (653)
Q Consensus 423 ~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~ 483 (653)
++|++++|.+++ .+|..+..+++|++|++++|++++.....+. ....|+.|++.++.+...
T Consensus 373 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 373 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred EEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 777777777764 5666666677777777777776643222211 233566676666665543
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.8e-30 Score=264.98 Aligned_cols=245 Identities=20% Similarity=0.287 Sum_probs=136.0
Q ss_pred CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCE
Q 041562 121 NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKT 200 (653)
Q Consensus 121 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 200 (653)
.++++++++++.++ .+|..+ .+++++|++++|.+++..+..+. .+++|++|++++|.+++..|..+..+++|++
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFK--NLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTT--TCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhc--cCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 46777777777776 666543 35666777777766665543332 4666666666666666555666666666666
Q ss_pred EEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCc--ccCccccCCCCCCeEEeecC
Q 041562 201 FRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTG--LIPRDIGKLTNLESLVLHNN 278 (653)
Q Consensus 201 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n 278 (653)
|++++|.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|
T Consensus 105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp EECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred EECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 666666665 3444432 556666666666665555555666666666666665542 34445555555555555555
Q ss_pred cCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCc
Q 041562 279 SLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQIS 358 (653)
Q Consensus 279 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 358 (653)
.++ .+|..+. ++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|
T Consensus 182 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp 256 (330)
T 1xku_A 182 NIT-TIPQGLP--PSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256 (330)
T ss_dssp CCC-SCCSSCC--TTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCC
T ss_pred ccc-cCCcccc--ccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCC
Confidence 555 2333332 455555555555543222 24455555555555555555444444445555555555555554 344
Q ss_pred hhhcCCCCCCEEECCCCCCCC
Q 041562 359 PGIVALKSLSFLSLSNNSLTN 379 (653)
Q Consensus 359 ~~l~~l~~L~~L~Ls~n~l~~ 379 (653)
..+..+++|++|++++|+++.
T Consensus 257 ~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 257 GGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TTTTTCSSCCEEECCSSCCCC
T ss_pred hhhccCCCcCEEECCCCcCCc
Confidence 444444455555555554443
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.8e-34 Score=310.23 Aligned_cols=305 Identities=19% Similarity=0.173 Sum_probs=174.2
Q ss_pred CCCCEEEccCCcCccCCCcc-CCCCCCCCEEEcccCCCCC----CccccccCCCCCCEEeccCCcCccccccccc-CCC-
Q 041562 172 CSIRHLDLSNNRFTGPVPLG-LGSCSRLKTFRAGFNYLTG----SLPDDIYTATSLEQLSLSFNHISGSIKNGIV-NLT- 244 (653)
Q Consensus 172 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~-~l~- 244 (653)
++|++|++++|+++...... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46788888888876543332 6677888888888888774 3456667778888888888887654443332 344
Q ss_pred ---CCcEEEcccCcCCc----ccCccccCCCCCCeEEeecCcCcccCCcccc-----CCCCCcEEEccCCcCccccC---
Q 041562 245 ---SLRILELYSNSLTG----LIPRDIGKLTNLESLVLHNNSLSGSLPSSLK-----NCINLTLLNLQSNFFEGDIS--- 309 (653)
Q Consensus 245 ---~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~i~--- 309 (653)
+|++|++++|+++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 58888888887774 3466677777888888888777643333222 24567777777777764221
Q ss_pred hhhccCCCCcCEEEccCCcccccCCccCc-----CCCCCCeEEccCcccccc----CchhhcCCCCCCEEECCCCCCCCC
Q 041562 310 VFNFSTLLKLRVLDLGSNLFTGSLPITLN-----SCKSLTAVNLARNQLEGQ----ISPGIVALKSLSFLSLSNNSLTNI 380 (653)
Q Consensus 310 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~ 380 (653)
...+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 12345567777777777776644333332 245677777777777653 355556667777777777766532
Q ss_pred Ccc-h-h-hccCCCCCcEEECCCCCCCcc----CCCcccccCCCCCCCcCEEEccCCcCcccchhhhcC-----CccCCe
Q 041562 381 TGA-I-R-ILMGCKNLKVLIIPLNFMDET----MPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGK-----LKKLQV 448 (653)
Q Consensus 381 ~~~-~-~-~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~ 448 (653)
... + . ....+++|+.|++++|.+++. ++. .+..+++|++|++++|.+++..+..+.. .++|++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-----~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR-----VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-----HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH-----HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 100 0 1 112345555555555544432 111 0112345555555555554333222221 135555
Q ss_pred eeCcCCcCccC----CchhhcCCCCCCEEEccCCcCc
Q 041562 449 LDLSFNQLTGS----VPRFLGNMSSLFHIDFSNNLIS 481 (653)
Q Consensus 449 L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 481 (653)
|++++|++++. ++..+..+++|++|++++|+++
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 55555555433 2333444455555555555544
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=1.2e-33 Score=315.42 Aligned_cols=455 Identities=14% Similarity=0.069 Sum_probs=244.0
Q ss_pred CCCccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCC---CCCCCcccc------------C-CCc
Q 041562 60 TDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRL---SGEFPSSLS------------S-NYI 123 (653)
Q Consensus 60 ~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~---~~~~p~~~~------------~-~~L 123 (653)
.-|++|.++.+....+ +.+.. ......+..+.++++|++|+|+++.. .+.+|..++ . ++|
T Consensus 39 ~vck~W~~~~~~~~~~---l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 114 (592)
T 3ogk_B 39 LVCRRWFKIDSETREH---VTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL 114 (592)
T ss_dssp TSCHHHHHHHHHHCCE---EEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HHhHHHHHhhhccccE---EEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence 3456899886532222 22222 12333445667889999999988542 123333222 1 677
Q ss_pred CEEEccCCCCCCCCchHHHhcCCC-CcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccC----CCccCCCCCCC
Q 041562 124 KIIDLSSNHFQGKIPSTIFRLTQN-LITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGP----VPLGLGSCSRL 198 (653)
Q Consensus 124 ~~L~Ls~n~l~~~ip~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L 198 (653)
++|+|++|.+++..+..+...+++ |++|++++|.-............+++|++|++++|.+++. ++..+..+++|
T Consensus 115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L 194 (592)
T 3ogk_B 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194 (592)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence 888888777765555555443444 7777777765211111111122567777777777776544 22234456677
Q ss_pred CEEEcccCCCC----CCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCC---cccCccccCCCCCC
Q 041562 199 KTFRAGFNYLT----GSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLT---GLIPRDIGKLTNLE 271 (653)
Q Consensus 199 ~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~ 271 (653)
++|++++|.++ +.++..+..+++|++|++++|.+.+ ++..+..+++|++|+++..... +..+..+..+++|+
T Consensus 195 ~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~ 273 (592)
T 3ogk_B 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273 (592)
T ss_dssp CEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC
T ss_pred cEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccc
Confidence 77777777665 2334444566677777777766663 5566666677777776643222 22233455566666
Q ss_pred eEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccC-
Q 041562 272 SLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLAR- 350 (653)
Q Consensus 272 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~- 350 (653)
.|+++++.. +.+|..+..+++|++|++++|.+++......+..+++|++|+++++...+.++.....+++|++|++++
T Consensus 274 ~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g 352 (592)
T 3ogk_B 274 RLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352 (592)
T ss_dssp EEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECC
T ss_pred ccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecC
Confidence 666665432 245555556666666666666654332222345566666666662222222233334455566666652
Q ss_pred ----------ccccccCch-hhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCC
Q 041562 351 ----------NQLEGQISP-GIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGF 419 (653)
Q Consensus 351 ----------n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 419 (653)
+.+++.... ....+++|++|+++.+.++ +..+.... ..+
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~--------------------------~~~~~~l~----~~~ 402 (592)
T 3ogk_B 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT--------------------------NESLESIG----TYL 402 (592)
T ss_dssp CCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCC--------------------------HHHHHHHH----HHC
T ss_pred ccccccccccCccCHHHHHHHHhhCccCeEEEeecCCcc--------------------------HHHHHHHH----hhC
Confidence 334322111 1233455555555444443 22111110 124
Q ss_pred CCcCEEEcc----CCcCccc-----chhhhcCCccCCeeeCcCCc--CccCCchhhc-CCCCCCEEEccCCcCcccC-Cc
Q 041562 420 KNLQVLGLA----ECKLKGQ-----VPSWIGKLKKLQVLDLSFNQ--LTGSVPRFLG-NMSSLFHIDFSNNLISGEF-PK 486 (653)
Q Consensus 420 ~~L~~L~L~----~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~-p~ 486 (653)
++|++|+++ .|.+++. ++..+..+++|++|++++|. +++..+..+. .+++|++|++++|++++.. +.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence 556666664 4455542 44445667777777776543 5544444443 3677777777777765421 11
Q ss_pred cccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccc-cc
Q 041562 487 EFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGN-IP 565 (653)
Q Consensus 487 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~-~p 565 (653)
.+..+ + +|++|+|++|.+++. ++
T Consensus 483 ~~~~~-------------------------------------------------------~-~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 483 FSRGC-------------------------------------------------------P-NLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp HHTCC-------------------------------------------------------T-TCCEEEEESCCCBHHHHH
T ss_pred HHhcC-------------------------------------------------------c-ccCeeeccCCCCcHHHHH
Confidence 11221 1 577777777776654 34
Q ss_pred cccccCCCCCeEeCCCCeeeeecCccc-ccCCCCCeeecCCC
Q 041562 566 DQISQLTNLERMDLSKNHLSGEIPVSL-KRLHFLSAFNVAEN 606 (653)
Q Consensus 566 ~~l~~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L~~L~ls~N 606 (653)
..+..+++|++|+|++|++++.-...+ ..++.+....+..+
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 444567777777777777765433323 24555555544443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.2e-29 Score=259.66 Aligned_cols=286 Identities=19% Similarity=0.199 Sum_probs=202.9
Q ss_pred CCCCCCCCccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCC
Q 041562 55 NWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHF 133 (653)
Q Consensus 55 ~W~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l 133 (653)
.|.....+|.|.|+ |+ .++++++ .+|..+. ++|++|++++|.+++..+..+.. ++|++|++++|.+
T Consensus 22 ~~~~~~~~C~~~~~-c~---------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 22 SSNQASLSCDRNGI-CK---------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp -----CCEECTTSE-EE---------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCccCCCCCCCeE-ee---------CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence 35445677999988 75 2344444 3454443 47788888888877655555655 7788888888877
Q ss_pred CCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCC-ccCCCCCCCCEEEcccC-CCCCC
Q 041562 134 QGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP-LGLGSCSRLKTFRAGFN-YLTGS 211 (653)
Q Consensus 134 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~ 211 (653)
+ .++...+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++..+ ..+..+++|++|++++| .+.+.
T Consensus 89 ~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~ 165 (353)
T 2z80_A 89 N-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK--PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165 (353)
T ss_dssp C-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHT--TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred C-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC--CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc
Confidence 7 34444455678888888888887765543332 57788888888888874333 36788888888888887 45555
Q ss_pred ccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccc---
Q 041562 212 LPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL--- 288 (653)
Q Consensus 212 ~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l--- 288 (653)
.+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++....+..+..+++|++|++++|.+++..+..+
T Consensus 166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 245 (353)
T 2z80_A 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245 (353)
T ss_dssp CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc
Confidence 56677888888888888888887778888888888888888888864433334567888888888888876554433
Q ss_pred cCCCCCcEEEccCCcCcc----ccChhhccCCCCcCEEEccCCcccccCCcc-CcCCCCCCeEEccCccccccCc
Q 041562 289 KNCINLTLLNLQSNFFEG----DISVFNFSTLLKLRVLDLGSNLFTGSLPIT-LNSCKSLTAVNLARNQLEGQIS 358 (653)
Q Consensus 289 ~~l~~L~~L~L~~n~l~~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~ 358 (653)
.....++.++++++.+.+ .+|. .+..+++|++|++++|.++ .+|.. +..+++|++|++++|.+.+..|
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l~~l~~-~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHHHHHHH-HHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccchhhccccccccccCcchhhhHH-HHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 245678888888887765 2442 5778899999999999998 45555 5889999999999999887654
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.3e-29 Score=255.09 Aligned_cols=283 Identities=19% Similarity=0.201 Sum_probs=215.7
Q ss_pred ccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCC--CCch
Q 041562 63 CLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQG--KIPS 139 (653)
Q Consensus 63 c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~--~ip~ 139 (653)
|.|.+|.|+..+ ++ .+|..+. ++|++|+|++|.++...+..+.. ++|++|+|++|.++. .+|.
T Consensus 7 C~~~~l~c~~~~-----------l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 72 (306)
T 2z66_A 7 CSGTEIRCNSKG-----------LT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72 (306)
T ss_dssp EETTEEECCSSC-----------CS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH
T ss_pred eCCCEEEcCCCC-----------cc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc
Confidence 789999997422 22 3343332 57888999988888544444555 889999999888872 2255
Q ss_pred HHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCC-ccCCCCCCCCEEEcccCCCCCCccccccC
Q 041562 140 TIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP-LGLGSCSRLKTFRAGFNYLTGSLPDDIYT 218 (653)
Q Consensus 140 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 218 (653)
.+. .+++|++|++++|.+++..+. ...+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus 73 ~~~-~~~~L~~L~Ls~n~i~~l~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 148 (306)
T 2z66_A 73 SDF-GTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148 (306)
T ss_dssp HHH-SCSCCCEEECCSCSEEEEEEE---EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred ccc-cccccCEEECCCCccccChhh---cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence 544 488999999999988764332 2368899999999998886554 57888999999999999998888888888
Q ss_pred CCCCCEEeccCCcCcc-cccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEE
Q 041562 219 ATSLEQLSLSFNHISG-SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLL 297 (653)
Q Consensus 219 l~~L~~L~Ls~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 297 (653)
+++|++|++++|.+.+ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 9999999999998876 578888999999999999999998878888899999999999999987777778889999999
Q ss_pred EccCCcCccccChhhccCCC-CcCEEEccCCcccccCCc--cCcCCCCCCeEEccCccccccCchhhcCC
Q 041562 298 NLQSNFFEGDISVFNFSTLL-KLRVLDLGSNLFTGSLPI--TLNSCKSLTAVNLARNQLEGQISPGIVAL 364 (653)
Q Consensus 298 ~L~~n~l~~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 364 (653)
++++|.+++..+. .+..++ +|++|++++|.+++.... ....+...+.+....+.+....|..+...
T Consensus 229 ~L~~N~l~~~~~~-~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~ 297 (306)
T 2z66_A 229 DYSLNHIMTSKKQ-ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 297 (306)
T ss_dssp ECTTSCCCBCSSS-SCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred ECCCCCCcccCHH-HHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence 9999999876663 677774 899999999988754221 11112344455666677777777766543
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5e-31 Score=294.09 Aligned_cols=329 Identities=17% Similarity=0.130 Sum_probs=187.1
Q ss_pred CCCCCCEEeccCCcCccc----ccccccCCCCCcEEEcccCcCCc----ccCccccCCCCCCeEEeecCcCcccCCcccc
Q 041562 218 TATSLEQLSLSFNHISGS----IKNGIVNLTSLRILELYSNSLTG----LIPRDIGKLTNLESLVLHNNSLSGSLPSSLK 289 (653)
Q Consensus 218 ~l~~L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 289 (653)
.+++|++|+|++|.+.+. ++..+..+++|++|++++|.+++ .++..+.++++|++|++++|.+.+ +|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 344455555555444332 22223344455555555554441 122223344555555555554442 334444
Q ss_pred CCCCCcEEEccCCcCc---cccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCc-hhhcCCC
Q 041562 290 NCINLTLLNLQSNFFE---GDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQIS-PGIVALK 365 (653)
Q Consensus 290 ~l~~L~~L~L~~n~l~---~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~ 365 (653)
.+++|++|+++..... +... ..+..+++|+.|+++++... .+|..+..+++|++|++++|.+++... ..+..++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKY-MNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSS-SCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred hhhHHHhhcccccccccchHHHH-HHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 4555555555432111 0111 13344455555555543222 344444555555555555555443322 2234555
Q ss_pred CCCEEECCCCCCCCCCcch-hhccCCCCCcEEECCC-----------CCCCccCCCcccccCCCCCCCcCEEEccCCcCc
Q 041562 366 SLSFLSLSNNSLTNITGAI-RILMGCKNLKVLIIPL-----------NFMDETMPDNDRLTSANGFKNLQVLGLAECKLK 433 (653)
Q Consensus 366 ~L~~L~Ls~n~l~~~~~~~-~~l~~l~~L~~L~l~~-----------n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 433 (653)
+|++|+++ +.+.. ..+ .....+++|++|+++. +.+++.... .....+++|++|+++.+.++
T Consensus 319 ~L~~L~L~-~~~~~--~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~----~l~~~~~~L~~L~l~~~~l~ 391 (592)
T 3ogk_B 319 NLEVLETR-NVIGD--RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI----ALAQGCQELEYMAVYVSDIT 391 (592)
T ss_dssp TCCEEEEE-GGGHH--HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH----HHHHHCTTCSEEEEEESCCC
T ss_pred CCCEEecc-CccCH--HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH----HHHhhCccCeEEEeecCCcc
Confidence 55555555 22211 111 1223455566666652 233221100 00124789999999999999
Q ss_pred ccchhhhcC-CccCCeeeCc----CCcCccC-----CchhhcCCCCCCEEEccCCc--CcccCCccccCCCCCCcccccc
Q 041562 434 GQVPSWIGK-LKKLQVLDLS----FNQLTGS-----VPRFLGNMSSLFHIDFSNNL--ISGEFPKEFCRLPALTPEQDKN 501 (653)
Q Consensus 434 ~~~p~~l~~-l~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~l~~~~ 501 (653)
+..+..+.. +++|+.|+++ .|++++. ++..+..+++|++|++++|. +++..+..+..
T Consensus 392 ~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~----------- 460 (592)
T 3ogk_B 392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ----------- 460 (592)
T ss_dssp HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH-----------
T ss_pred HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH-----------
Confidence 887777776 9999999996 6677763 44457789999999998654 54332222211
Q ss_pred cccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCcc-ccccccccCCCCCeEeCC
Q 041562 502 KANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSG-NIPDQISQLTNLERMDLS 580 (653)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~LdLs 580 (653)
.++ .|+.|+|++|.+++ .++..+..+++|++|+|+
T Consensus 461 -------------------------------------------~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 461 -------------------------------------------YSP-NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp -------------------------------------------SCT-TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred -------------------------------------------hCc-cceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 122 79999999999987 356667889999999999
Q ss_pred CCeeeee-cCcccccCCCCCeeecCCCccccc
Q 041562 581 KNHLSGE-IPVSLKRLHFLSAFNVAENNLRGS 611 (653)
Q Consensus 581 ~N~l~~~-ip~~l~~l~~L~~L~ls~N~l~g~ 611 (653)
+|.+++. ++.....+++|++|++++|++++.
T Consensus 497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp SCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 9998765 444456799999999999998754
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.7e-28 Score=254.98 Aligned_cols=283 Identities=21% Similarity=0.191 Sum_probs=180.0
Q ss_pred CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE 250 (653)
Q Consensus 171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 250 (653)
++.....+++++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 334444555555555 3444333 3566666666666644444566666666666666666655555666666666666
Q ss_pred cccCcCCcccCccccCCCCCCeEEeecCcCcccCC-ccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562 251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLP-SSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF 329 (653)
Q Consensus 251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 329 (653)
+++|++++..+..++.+++|++|++++|++++..+ ..+..+++|++|++++|...+.++...+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 66666665433346666666666666666663222 25666666666666666322244334566677777777777777
Q ss_pred cccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCC
Q 041562 330 TGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPD 409 (653)
Q Consensus 330 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 409 (653)
++..|..+..+++|++|++++|.+.......+..+++|++|++++|.++.++..
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-------------------------- 240 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS-------------------------- 240 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc--------------------------
Confidence 766667777777777777777776543333344567777777777776643210
Q ss_pred cccccCCCCCCCcCEEEccCCcCcc----cchhhhcCCccCCeeeCcCCcCccCCchh-hcCCCCCCEEEccCCcCcccC
Q 041562 410 NDRLTSANGFKNLQVLGLAECKLKG----QVPSWIGKLKKLQVLDLSFNQLTGSVPRF-LGNMSSLFHIDFSNNLISGEF 484 (653)
Q Consensus 410 ~~~~~~~~~~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~ 484 (653)
.. ........++.++++++.+.+ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++..
T Consensus 241 ~l--~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 241 EL--STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp --------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cc--ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 00 001234567788888888775 47888999999999999999999 45554 689999999999999998765
Q ss_pred C
Q 041562 485 P 485 (653)
Q Consensus 485 p 485 (653)
|
T Consensus 318 ~ 318 (353)
T 2z80_A 318 P 318 (353)
T ss_dssp H
T ss_pred C
Confidence 4
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.3e-27 Score=243.23 Aligned_cols=247 Identities=23% Similarity=0.315 Sum_probs=156.0
Q ss_pred CEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccC--ChhhhhcCCCCCCEEE
Q 041562 101 SHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLI--SWSAWVDSFCSIRHLD 178 (653)
Q Consensus 101 ~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~~l~~L~~L~ 178 (653)
+.++.+++.++ .+|..+. ++|++|+|++|+++ .+|..++..+++|++|++++|.++... +..+. .+++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~~-~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP-SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF--GTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC-TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH--SCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCCC-CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccc--cccccCEEE
Confidence 56788888877 4554333 67888888888888 788777777888888888888877432 33332 577788888
Q ss_pred ccCCcCccCCCccCCCCCCCCEEEcccCCCCCCcc-ccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCC
Q 041562 179 LSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP-DDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLT 257 (653)
Q Consensus 179 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 257 (653)
+++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 8777776 345556666777777777666664333 35566666666666666666555566666666666666666665
Q ss_pred c-ccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCcc
Q 041562 258 G-LIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPIT 336 (653)
Q Consensus 258 ~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 336 (653)
+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ++...+..+++|++|++++|.+++..+..
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcccCHHH
Confidence 4 345556666666666666666665555556666666666666666553 22234555555555555555555555555
Q ss_pred CcCCC-CCCeEEccCcccc
Q 041562 337 LNSCK-SLTAVNLARNQLE 354 (653)
Q Consensus 337 l~~l~-~L~~L~L~~n~l~ 354 (653)
+..++ +|++|++++|.++
T Consensus 243 ~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCCCTTCCEEECTTCCEE
T ss_pred HHhhhccCCEEEccCCCee
Confidence 55542 5555555555554
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.8e-27 Score=242.66 Aligned_cols=235 Identities=19% Similarity=0.238 Sum_probs=156.0
Q ss_pred CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCE
Q 041562 121 NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKT 200 (653)
Q Consensus 121 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 200 (653)
.++++|+|++|.++ .+|..++. +++|++|++++|.++ .+|..+. .+++|++|++++|.++ .+|..+.++++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~--~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQ--QFAGLETLTLARNPLR-ALPASIASLNRLRE 154 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGG--GGTTCSEEEEESCCCC-CCCGGGGGCTTCCE
T ss_pred cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHh--ccCCCCEEECCCCccc-cCcHHHhcCcCCCE
Confidence 56777777777776 66665544 566666666666555 3333322 3555555555555555 44555555555555
Q ss_pred EEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcC
Q 041562 201 FRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSL 280 (653)
Q Consensus 201 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 280 (653)
|++++|.+.+.+|..+... ..+..+.++++|++|++++|+++ .+|..++.+++|++|++++|.+
T Consensus 155 L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 155 LSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred EECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 5555554444444433220 01112334777777777777777 5677777777888888888877
Q ss_pred cccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchh
Q 041562 281 SGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPG 360 (653)
Q Consensus 281 ~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 360 (653)
+ .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..
T Consensus 219 ~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 219 S-ALGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp C-CCCGGGGGCTTCCEEECTTCTTCCBCCC-CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred C-cCchhhccCCCCCEEECcCCcchhhhHH-HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 7 3556677778888888888777777664 6777788888888888777778877888888888888888888888888
Q ss_pred hcCCCCCCEEECCCCCCCC
Q 041562 361 IVALKSLSFLSLSNNSLTN 379 (653)
Q Consensus 361 l~~l~~L~~L~Ls~n~l~~ 379 (653)
++.+++|+.+++..+.+..
T Consensus 297 l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 297 IAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp GGGSCTTCEEECCGGGSCC
T ss_pred HhhccCceEEeCCHHHHHH
Confidence 8888888888887766543
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=7.4e-27 Score=235.07 Aligned_cols=206 Identities=24% Similarity=0.247 Sum_probs=132.8
Q ss_pred CCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCc-CcccccccccCCCCCcEEE
Q 041562 172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH-ISGSIKNGIVNLTSLRILE 250 (653)
Q Consensus 172 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~ 250 (653)
++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555555444555666666666666666665555566666666666666665 5544456666666666666
Q ss_pred cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562 251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330 (653)
Q Consensus 251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 330 (653)
+++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCccc
Confidence 6666666665666666677777777777666555555666677777777777666 344335666777777777777777
Q ss_pred ccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562 331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT 378 (653)
Q Consensus 331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 378 (653)
+..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 666667777777777777777777655555666777777777777655
No 58
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=1.3e-30 Score=290.94 Aligned_cols=460 Identities=17% Similarity=0.121 Sum_probs=245.8
Q ss_pred CCccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCC---CCCccc-------------cCCCcC
Q 041562 61 DCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSG---EFPSSL-------------SSNYIK 124 (653)
Q Consensus 61 ~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~---~~p~~~-------------~~~~L~ 124 (653)
-|++|.++... ....+++...... .....+.++++|++|+++++.... ..|..+ ..++|+
T Consensus 33 vck~W~~~~~~---~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~ 108 (594)
T 2p1m_B 33 VCKSWYEIERW---CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE 108 (594)
T ss_dssp SCHHHHHHHHH---HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCC
T ss_pred HHHHHHHhhhh---hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCC
Confidence 45678877321 2334555443221 112346778999999999876321 122111 117888
Q ss_pred EEEccCCCCCCCCchHHHhcCCCCcEEEccCC-cCcccCChhhhhcCCCCCCEEEccCCcCccCCCcc----CCCCCCCC
Q 041562 125 IIDLSSNHFQGKIPSTIFRLTQNLITFNVSNN-SFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLG----LGSCSRLK 199 (653)
Q Consensus 125 ~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~ 199 (653)
+|+|++|.+++..+..+...+++|++|++++| .++......+ ...+++|++|++++|.+++..+.. ...+++|+
T Consensus 109 ~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~ 187 (594)
T 2p1m_B 109 EIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI-AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187 (594)
T ss_dssp EEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHH-HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred eEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH-HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence 88888888877666666656888888888888 4433211112 225788888888888876543333 23566777
Q ss_pred EEEcccCC--CCCC-ccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCc-------CCcccCccccCCCC
Q 041562 200 TFRAGFNY--LTGS-LPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNS-------LTGLIPRDIGKLTN 269 (653)
Q Consensus 200 ~L~L~~n~--l~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~p~~l~~l~~ 269 (653)
+|++++|. +... ++..+..+++|++|++++|...+.++..+..+++|++|+++.+. +.+ ++..+.++++
T Consensus 188 ~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~ 266 (594)
T 2p1m_B 188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKE 266 (594)
T ss_dssp EEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTT
T ss_pred EEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCC
Confidence 88777775 2211 11222345777777777773222366666677777777755442 222 2234556666
Q ss_pred CCeE-EeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccccc-CCccCcCCCCCCeEE
Q 041562 270 LESL-VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGS-LPITLNSCKSLTAVN 347 (653)
Q Consensus 270 L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~ 347 (653)
|+.| .+.+... +.++..+..+++|++|++++|.+++......+..+++|++|++++| +... ++.....+++|++|+
T Consensus 267 L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 267 LRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELR 344 (594)
T ss_dssp CCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEE
T ss_pred cccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEE
Confidence 6666 2322221 2333333445566666666665443222222345555666665555 2211 111122345555555
Q ss_pred ccC---------ccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCC
Q 041562 348 LAR---------NQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANG 418 (653)
Q Consensus 348 L~~---------n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 418 (653)
+++ +.+++.....+. ..+++|+.|.+..+.+++....... ..
T Consensus 345 L~~~~~~g~~~~~~l~~~~l~~l~-------------------------~~~~~L~~L~~~~~~l~~~~~~~l~----~~ 395 (594)
T 2p1m_B 345 VFPSEPFVMEPNVALTEQGLVSVS-------------------------MGCPKLESVLYFCRQMTNAALITIA----RN 395 (594)
T ss_dssp EECSCTTCSSCSSCCCHHHHHHHH-------------------------HHCTTCCEEEEEESCCCHHHHHHHH----HH
T ss_pred EecCcccccccCCCCCHHHHHHHH-------------------------HhchhHHHHHHhcCCcCHHHHHHHH----hh
Confidence 522 222222111111 1234444444433333322111000 12
Q ss_pred CCCcCEEEcc--C----CcCcc-----cchhhhcCCccCCeeeCcCCcCccCCchhhcC-CCCCCEEEccCCcCcccCCc
Q 041562 419 FKNLQVLGLA--E----CKLKG-----QVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGN-MSSLFHIDFSNNLISGEFPK 486 (653)
Q Consensus 419 ~~~L~~L~L~--~----n~l~~-----~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~ 486 (653)
+++|++|+++ + +.+++ .++..+..+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+.
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~ 474 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH 474 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH
Confidence 4556666666 2 33431 2233356677778888766 555554444544 77788888887776543222
Q ss_pred cccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCcccccc
Q 041562 487 EFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPD 566 (653)
Q Consensus 487 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~ 566 (653)
.+ ...++ +|++|+|++|.+++..+.
T Consensus 475 ~l------------------------------------------------------~~~~~-~L~~L~L~~n~~~~~~~~ 499 (594)
T 2p1m_B 475 HV------------------------------------------------------LSGCD-SLRKLEIRDCPFGDKALL 499 (594)
T ss_dssp HH------------------------------------------------------HHHCT-TCCEEEEESCSCCHHHHH
T ss_pred HH------------------------------------------------------HhcCC-CcCEEECcCCCCcHHHHH
Confidence 11 01223 678888888888655443
Q ss_pred -ccccCCCCCeEeCCCCeeeeecCccc-ccCCCCCeeecCCCcccccCC
Q 041562 567 -QISQLTNLERMDLSKNHLSGEIPVSL-KRLHFLSAFNVAENNLRGSIP 613 (653)
Q Consensus 567 -~l~~l~~L~~LdLs~N~l~~~ip~~l-~~l~~L~~L~ls~N~l~g~iP 613 (653)
.+..+++|++|++++|+++......+ ..++.|+...+..+.-....|
T Consensus 500 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~ 548 (594)
T 2p1m_B 500 ANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRP 548 (594)
T ss_dssp HTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSC
T ss_pred HHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcccccc
Confidence 34457888888888888864433444 456777666666654443333
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.3e-26 Score=253.77 Aligned_cols=279 Identities=24% Similarity=0.322 Sum_probs=208.9
Q ss_pred CCCCCCCCCccccceEeC-------CCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccCCCcCEE
Q 041562 54 LNWSSSTDCCLWEGIKCD-------ANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKII 126 (653)
Q Consensus 54 ~~W~~~~~~c~w~gv~c~-------~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L 126 (653)
+.|..+.+||.|+|..|. ....++.|++++++++ .+|..+. ++|++|+|++|.++ .+|. ..++|++|
T Consensus 13 ~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~--~l~~L~~L 86 (622)
T 3g06_A 13 SAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA--LPPELRTL 86 (622)
T ss_dssp HHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC--CCTTCCEE
T ss_pred HHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC--cCCCCCEE
Confidence 357667789999775431 1235889999999988 7777665 79999999999988 4555 34889999
Q ss_pred EccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccC
Q 041562 127 DLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFN 206 (653)
Q Consensus 127 ~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 206 (653)
+|++|.++ .+|. .+++|++|++++|.+++..+ .+++|++|++++|.+++ +|.. +++|++|++++|
T Consensus 87 ~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~------~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N 151 (622)
T 3g06_A 87 EVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA------LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDN 151 (622)
T ss_dssp EECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC------CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred EcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC------CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCC
Confidence 99999988 6776 57889999999998887644 36788999999988875 4443 478888888888
Q ss_pred CCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCc
Q 041562 207 YLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPS 286 (653)
Q Consensus 207 ~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 286 (653)
.+++ +|. .+++|+.|++++|.+++ +| ..+++|++|++++|.+++ +|.. +++|+.|++++|.++ .+|.
T Consensus 152 ~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~ 218 (622)
T 3g06_A 152 QLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA 218 (622)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred cCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC
Confidence 8874 443 34678888888888874 44 456788888888888875 3432 467888888888887 4554
Q ss_pred cccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCC
Q 041562 287 SLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKS 366 (653)
Q Consensus 287 ~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 366 (653)
. +++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++
T Consensus 219 ~---~~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~ 285 (622)
T 3g06_A 219 L---PSGLKELIVSGNRLTS-LP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSS 285 (622)
T ss_dssp C---CTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCT
T ss_pred C---CCCCCEEEccCCccCc-CC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccc
Confidence 2 4678888888888874 54 34577888888888887 4554 4577888888888887 66777788888
Q ss_pred CCEEECCCCCCCC
Q 041562 367 LSFLSLSNNSLTN 379 (653)
Q Consensus 367 L~~L~Ls~n~l~~ 379 (653)
|+.|++++|.++.
T Consensus 286 L~~L~L~~N~l~~ 298 (622)
T 3g06_A 286 ETTVNLEGNPLSE 298 (622)
T ss_dssp TCEEECCSCCCCH
T ss_pred cCEEEecCCCCCC
Confidence 8888888887763
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.4e-27 Score=236.07 Aligned_cols=223 Identities=22% Similarity=0.251 Sum_probs=116.5
Q ss_pred EEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccC
Q 041562 77 SHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSN 155 (653)
Q Consensus 77 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~ 155 (653)
+.++.++.+++ .+|..+ .++|++|++++|.+++..+..+.. ++|++|++++|.++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~--------------------- 69 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA--------------------- 69 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC---------------------
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc---------------------
Confidence 44555555554 233322 346666666666666544444433 44555555555444
Q ss_pred CcCcccCChhhhhcCCCCCCEEEccCCc-CccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcc
Q 041562 156 NSFTGLISWSAWVDSFCSIRHLDLSNNR-FTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISG 234 (653)
Q Consensus 156 n~l~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~ 234 (653)
+..+..+. .+++|++|++++|. ++...+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+
T Consensus 70 ----~~~~~~~~--~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 143 (285)
T 1ozn_A 70 ----RIDAAAFT--GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143 (285)
T ss_dssp ----EECTTTTT--TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ----eeCHhhcC--CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc
Confidence 33332221 34455555555554 443334455555555555555555554445555555555555555555554
Q ss_pred cccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhcc
Q 041562 235 SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFS 314 (653)
Q Consensus 235 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~ 314 (653)
..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ++...+.
T Consensus 144 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~ 222 (285)
T 1ozn_A 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALA 222 (285)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHT
T ss_pred cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcc
Confidence 444445555555555555555554444445555555555555555555555555555555556655555553 3333455
Q ss_pred CCCCcCEEEccCCccc
Q 041562 315 TLLKLRVLDLGSNLFT 330 (653)
Q Consensus 315 ~l~~L~~L~L~~n~l~ 330 (653)
.+++|++|++++|.+.
T Consensus 223 ~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 223 PLRALQYLRLNDNPWV 238 (285)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cCcccCEEeccCCCcc
Confidence 5555566666555554
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=8.5e-29 Score=252.50 Aligned_cols=203 Identities=20% Similarity=0.214 Sum_probs=124.9
Q ss_pred CCCCCEEEccCCcCccCCCccC--CCCCCCCEEEcccCCCCCCccccccCC-----CCCCEEeccCCcCcccccccccCC
Q 041562 171 FCSIRHLDLSNNRFTGPVPLGL--GSCSRLKTFRAGFNYLTGSLPDDIYTA-----TSLEQLSLSFNHISGSIKNGIVNL 243 (653)
Q Consensus 171 l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~i~~~~~~~l~~l 243 (653)
+++|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5556666666666655555554 5666666666666666644 5555444 666666666666665555666666
Q ss_pred CCCcEEEcccCcCCcc--cCccc--cCCCCCCeEEeecCcCcc--cCC-ccccCCCCCcEEEccCCcCccccChhhccCC
Q 041562 244 TSLRILELYSNSLTGL--IPRDI--GKLTNLESLVLHNNSLSG--SLP-SSLKNCINLTLLNLQSNFFEGDISVFNFSTL 316 (653)
Q Consensus 244 ~~L~~L~L~~n~l~~~--~p~~l--~~l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l 316 (653)
++|++|++++|++.+. .|..+ +.+++|++|++++|++++ .++ ..+..+++|++|++++|.+++.++...+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 6666666666665543 22233 566666666766666652 111 2234566777777777777655543345556
Q ss_pred CCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCC
Q 041562 317 LKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTN 379 (653)
Q Consensus 317 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 379 (653)
++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|+++.
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 67777777777776 5565555 6777777777777654 44 6677777777777777653
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.7e-28 Score=246.97 Aligned_cols=252 Identities=20% Similarity=0.171 Sum_probs=157.5
Q ss_pred ccCCCCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCC-CCCCchHHH------hcCCCCcEEEccCCcCcccCChhh
Q 041562 94 IGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHF-QGKIPSTIF------RLTQNLITFNVSNNSFTGLISWSA 166 (653)
Q Consensus 94 l~~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l-~~~ip~~~~------~~l~~L~~L~Ls~n~l~~~~~~~~ 166 (653)
++..++|++|++++|.+ .+|..+... |++|+|++|.+ .+.+|..+. ..+++|++|++++|.+++.+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~-L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI-IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH-HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH-HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 34456677777777777 556544433 66777777776 344555443 136677777777777776666554
Q ss_pred hhcCCCCCCEEEccCCcCccCCCccCCCC-----CCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCccc--cccc
Q 041562 167 WVDSFCSIRHLDLSNNRFTGPVPLGLGSC-----SRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGS--IKNG 239 (653)
Q Consensus 167 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~--~~~~ 239 (653)
+...+++|++|++++|.+++. |..++.+ ++|++|++++|.+++..|..+..+++|++|++++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 333566777777777777655 5555555 6777777777777666666677777777777777766543 2333
Q ss_pred c--cCCCCCcEEEcccCcCCcc--cC-ccccCCCCCCeEEeecCcCcccCC-ccccCCCCCcEEEccCCcCccccChhhc
Q 041562 240 I--VNLTSLRILELYSNSLTGL--IP-RDIGKLTNLESLVLHNNSLSGSLP-SSLKNCINLTLLNLQSNFFEGDISVFNF 313 (653)
Q Consensus 240 l--~~l~~L~~L~L~~n~l~~~--~p-~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~i~~~~~ 313 (653)
+ ..+++|++|++++|++++. ++ ..+..+++|++|++++|++++..| ..+..+++|++|++++|.++ .+|. .+
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~ 272 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK-GL 272 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS-SC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh-hc
Confidence 3 6667777777777776631 11 223456677777777777766553 34455667777777777776 5553 22
Q ss_pred cCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccc
Q 041562 314 STLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEG 355 (653)
Q Consensus 314 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 355 (653)
. ++|++|++++|++++. |. +..+++|++|++++|.+++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 2 6677777777777644 44 6666777777777776654
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=9.2e-26 Score=241.66 Aligned_cols=247 Identities=24% Similarity=0.261 Sum_probs=152.4
Q ss_pred CCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeec
Q 041562 198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHN 277 (653)
Q Consensus 198 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 277 (653)
.+.++..+..++ .+|..+. ++++.|+|++|.+.+..+..|.++++|++|++++|++++..+..|.++++|++|+|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 455666666665 4555443 4566666666666655556666666666666666666655555566666666666666
Q ss_pred CcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCc-ccccCCccCcCCCCCCeEEccCcccccc
Q 041562 278 NSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNL-FTGSLPITLNSCKSLTAVNLARNQLEGQ 356 (653)
Q Consensus 278 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 356 (653)
|++++..+..+..+++|++|++++|.++ .++...|..+++|++|++++|+ +....+..+.++
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l---------------- 184 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL---------------- 184 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC----------------
T ss_pred CcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc----------------
Confidence 6666444445556666666666666555 3333345555555555555532 222222234444
Q ss_pred CchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccc
Q 041562 357 ISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQV 436 (653)
Q Consensus 357 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 436 (653)
++|++|++++|.++.++ .+..+++|+.|++++|.+.+..+.. +.++++|++|++++|++++..
T Consensus 185 --------~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 185 --------SNLRYLNLAMCNLREIP----NLTPLIKLDELDLSGNHLSAIRPGS-----FQGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp --------SSCCEEECTTSCCSSCC----CCTTCSSCCEEECTTSCCCEECTTT-----TTTCTTCCEEECTTCCCCEEC
T ss_pred --------cccCeecCCCCcCcccc----ccCCCcccCEEECCCCccCccChhh-----hccCccCCEEECCCCceeEEC
Confidence 44455555555444333 1344455555555555555444432 346778888888888888777
Q ss_pred hhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCc
Q 041562 437 PSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481 (653)
Q Consensus 437 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 481 (653)
+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++.
T Consensus 248 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 778888888888888888888777777888888888888888875
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=7.3e-26 Score=243.29 Aligned_cols=247 Identities=21% Similarity=0.184 Sum_probs=131.3
Q ss_pred CCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEc
Q 041562 100 LSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDL 179 (653)
Q Consensus 100 L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L 179 (653)
.+.++.++..++ .+|..+. +++++|+|++|+++ +..+..+. .+++|++|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~-~~l~~L~L~~n~i~-------------------------~~~~~~~~--~l~~L~~L~L 106 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP-SNTRYLNLMENNIQ-------------------------MIQADTFR--HLHHLEVLQL 106 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCC-------------------------EECTTTTT--TCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCCC-CCccEEECcCCcCc-------------------------eECHHHcC--CCCCCCEEEC
Confidence 345666666665 3443222 45555555555555 33332221 3444555555
Q ss_pred cCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCc-CCc
Q 041562 180 SNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNS-LTG 258 (653)
Q Consensus 180 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-l~~ 258 (653)
++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+....+..+.++++|++|++++|. +..
T Consensus 107 s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~ 186 (452)
T 3zyi_A 107 GRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186 (452)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE
T ss_pred CCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc
Confidence 5555544444455555555555555555554334445555555555555555554444455555555555555532 222
Q ss_pred ccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCc
Q 041562 259 LIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLN 338 (653)
Q Consensus 259 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 338 (653)
..+..|..+++|++|++++|++++ +| .+..+++|++|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+.
T Consensus 187 i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 187 ISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECG-GGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCc-ccccCccCCCEEEeCCCcCceECHHHhc
Confidence 222345555566666666665553 23 35555666666666666653323 3555666666666666666655555666
Q ss_pred CCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562 339 SCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT 378 (653)
Q Consensus 339 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 378 (653)
.+++|+.|+|++|++++..+..+..+++|++|++++|.+.
T Consensus 264 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 6666666666666666555555555666666666666554
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=9.1e-26 Score=242.57 Aligned_cols=247 Identities=21% Similarity=0.236 Sum_probs=161.4
Q ss_pred CCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeec
Q 041562 198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHN 277 (653)
Q Consensus 198 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 277 (653)
.+.++.++..++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456677666666 4565443 5677777777777766667777777777777777777766666777777777777777
Q ss_pred CcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCC-cccccCCccCcCCCCCCeEEccCcccccc
Q 041562 278 NSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSN-LFTGSLPITLNSCKSLTAVNLARNQLEGQ 356 (653)
Q Consensus 278 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 356 (653)
|++++..+..+..+++|++|++++|.++ .++...|..+++|++|++++| .+....+..+.++++|++|++++|.+++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 7777555555666777777777777766 444445666666666666663 33322233455555555555555555432
Q ss_pred CchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccc
Q 041562 357 ISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQV 436 (653)
Q Consensus 357 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 436 (653)
| .+..+++|++|++++|.+ .+..+.. +.++++|++|++++|++++..
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l--------------------------~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHF--------------------------PEIRPGS-----FHGLSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCC--------------------------SEECGGG-----GTTCTTCCEEECTTSCCCEEC
T ss_pred -c-cccccccccEEECcCCcC--------------------------cccCccc-----ccCccCCCEEEeCCCcCceEC
Confidence 2 244444455555544444 4333322 235677788888888887777
Q ss_pred hhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCc
Q 041562 437 PSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLIS 481 (653)
Q Consensus 437 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 481 (653)
+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++.
T Consensus 259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 777888888888888888888766677777888888888888765
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=6.2e-26 Score=243.00 Aligned_cols=247 Identities=22% Similarity=0.228 Sum_probs=118.5
Q ss_pred CCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEc
Q 041562 100 LSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDL 179 (653)
Q Consensus 100 L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~L 179 (653)
.+.++.+++.++ .+|..+. +++++|+|++|+++ .++...+..+++|++|+|++|.+++..+..+. .+++|++|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~-~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~--~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS-TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN--GLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC-TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGT--TCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC-CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhcc--CCccCCEEEC
Confidence 456777777776 4554332 56666666666666 33333344455555555555555544433322 3455555555
Q ss_pred cCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcc
Q 041562 180 SNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGL 259 (653)
Q Consensus 180 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 259 (653)
++|+++...+..+..+++|++|++++|.++...+..+..+++|++|++++|. .+...
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-----------------------~l~~i 176 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-----------------------RLSYI 176 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT-----------------------TCCEE
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCC-----------------------Cccee
Confidence 5555544333344444444444444444443333344444444444444422 22211
Q ss_pred cCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcC
Q 041562 260 IPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNS 339 (653)
Q Consensus 260 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 339 (653)
.+..|.++++|++|++++|.++ .+| .+..+++|++|++++|.+++..+ ..|..+++|+.|++++|.+++..+..|..
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred CcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeEEChhhhcC
Confidence 1223444444444444444444 222 24444444444444444442222 24444455555555555555444444555
Q ss_pred CCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCC
Q 041562 340 CKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSL 377 (653)
Q Consensus 340 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 377 (653)
+++|++|+|++|++++..+..+..+++|+.|++++|.+
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 55555555555555544444444555555555555544
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=5.3e-26 Score=226.75 Aligned_cols=217 Identities=28% Similarity=0.347 Sum_probs=140.9
Q ss_pred CCCccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCc
Q 041562 60 TDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIP 138 (653)
Q Consensus 60 ~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip 138 (653)
.++|.|.|+.|.-.+.++.+++++++++. +|..+. +++++|+|++|.+++..+..+.. ++|++|++++|.++ .+|
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeC
Confidence 58999999999765667788888888773 555443 56778888888777655555554 66666666666666 555
Q ss_pred hHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccC
Q 041562 139 STIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYT 218 (653)
Q Consensus 139 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 218 (653)
..++..+++|++|++++| .+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 78 ~~~~~~l~~L~~L~l~~n--------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 131 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDN--------------------------KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131 (270)
T ss_dssp TTTTSSCTTCCEEECCSS--------------------------CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred hhhhcCCCCCCEEECCCC--------------------------cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc
Confidence 555444555555555555 444444444555555666666666655555555566
Q ss_pred CCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEE
Q 041562 219 ATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLN 298 (653)
Q Consensus 219 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 298 (653)
+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+
T Consensus 132 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEE
Confidence 66666666666666654445566667777777777777665555666777777777777777755555566777777777
Q ss_pred ccCCcCcc
Q 041562 299 LQSNFFEG 306 (653)
Q Consensus 299 L~~n~l~~ 306 (653)
+++|.+..
T Consensus 212 l~~N~~~c 219 (270)
T 2o6q_A 212 LQENPWDC 219 (270)
T ss_dssp CCSSCBCC
T ss_pred ecCCCeeC
Confidence 77777654
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=8.6e-25 Score=241.18 Aligned_cols=266 Identities=27% Similarity=0.271 Sum_probs=134.2
Q ss_pred CCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEccc
Q 041562 174 IRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS 253 (653)
Q Consensus 174 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 253 (653)
+++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+|++|.++ .+|. .+++|++|++++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECS
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcC
Confidence 444444444444 3333332 34444444444444 2332 2344455555555444 2332 344455555555
Q ss_pred CcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccC
Q 041562 254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSL 333 (653)
Q Consensus 254 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 333 (653)
|++++. |. .+++|+.|++++|++++ +|.. +++|++|++++|.+++ ++. .+++|+.|++++|.+++ +
T Consensus 111 N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 111 NPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp CCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-C
T ss_pred CcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC----ccCCCCEEECCCCCCCC-C
Confidence 554432 22 33445555555555542 3322 2455555555555542 221 23445555555555552 3
Q ss_pred CccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccc
Q 041562 334 PITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRL 413 (653)
Q Consensus 334 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 413 (653)
| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++.++. .+++|+.|++++|.+.+ +|
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~------~~~~L~~L~Ls~N~L~~-lp----- 237 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPA------LPSGLKELIVSGNRLTS-LP----- 237 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCC------CCTTCCEEECCSSCCSC-CC-----
T ss_pred c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCC------CCCCCCEEEccCCccCc-CC-----
Confidence 3 223455555555555543 222 12455555555555554442 12455566666555544 22
Q ss_pred cCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCC
Q 041562 414 TSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRL 491 (653)
Q Consensus 414 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 491 (653)
..+++|++|++++|.++ .+|. .+++|+.|+|++|+++ .+|..+.++++|+.|+|++|++++.+|..+..+
T Consensus 238 ---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 238 ---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp ---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred ---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 13456777777777766 3444 4566777777777776 556667777777777777777776666655443
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.5e-27 Score=243.94 Aligned_cols=257 Identities=18% Similarity=0.162 Sum_probs=131.8
Q ss_pred CEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEc
Q 041562 75 RVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNV 153 (653)
Q Consensus 75 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L 153 (653)
+....+++.+.+...+...+..+++|++|+|++|.+++..|..+.. ++|++|+|++|.+++..| +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 3445556666665554455555666777777777766555555544 556666666665553332 344555555555
Q ss_pred cCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCc
Q 041562 154 SNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHIS 233 (653)
Q Consensus 154 s~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~ 233 (653)
++|.+++.. ..++|++|++++|.+++..+. .+++|++|++++|.++
T Consensus 88 s~n~l~~l~-------~~~~L~~L~l~~n~l~~~~~~---------------------------~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 88 NNNYVQELL-------VGPSIETLHAANNNISRVSCS---------------------------RGQGKKNIYLANNKIT 133 (317)
T ss_dssp CSSEEEEEE-------ECTTCCEEECCSSCCSEEEEC---------------------------CCSSCEEEECCSSCCC
T ss_pred cCCcccccc-------CCCCcCEEECCCCccCCcCcc---------------------------ccCCCCEEECCCCCCC
Confidence 555554432 124555555555555433222 1344555555555554
Q ss_pred ccccccccCCCCCcEEEcccCcCCcccCccc-cCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhh
Q 041562 234 GSIKNGIVNLTSLRILELYSNSLTGLIPRDI-GKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFN 312 (653)
Q Consensus 234 ~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~ 312 (653)
+..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++ ++. .
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~-~ 209 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGP-E 209 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECG-G
T ss_pred CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chh-h
Confidence 4444444455555555555555554444333 2445555555555555433 1 12234555555555555552 322 2
Q ss_pred ccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccc-ccCchhhcCCCCCCEEECC
Q 041562 313 FSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE-GQISPGIVALKSLSFLSLS 373 (653)
Q Consensus 313 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls 373 (653)
+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+. +..+.++..+++|+.++++
T Consensus 210 ~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 445555555555555555 34445555555555555555555 4445555555555555554
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=6.1e-29 Score=277.32 Aligned_cols=374 Identities=16% Similarity=0.159 Sum_probs=201.5
Q ss_pred CCCCCCEEEccCCcCccCCCccCC-CCCCCCEEEcccC-CCCCC-ccccccCCCCCCEEeccCCcCcccccccc----cC
Q 041562 170 SFCSIRHLDLSNNRFTGPVPLGLG-SCSRLKTFRAGFN-YLTGS-LPDDIYTATSLEQLSLSFNHISGSIKNGI----VN 242 (653)
Q Consensus 170 ~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l----~~ 242 (653)
.+++|++|++++|.+++..+..+. .+++|++|++++| .+++. ++..+..+++|++|++++|.+++..+..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 355666666666655544444443 4556666666655 33321 23333356666666666666554333322 24
Q ss_pred CCCCcEEEcccCc--CCcc-cCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCc-------CccccChhh
Q 041562 243 LTSLRILELYSNS--LTGL-IPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNF-------FEGDISVFN 312 (653)
Q Consensus 243 l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------l~~~i~~~~ 312 (653)
+++|++|++++|. +... ++..+..+++|++|++++|...+.++..+..+++|++|+++.+. +.+ ++. .
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~-~ 260 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSV-A 260 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHH-H
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHH-H
Confidence 5566666666664 2111 11112335666666666662222355555666666666644332 221 221 4
Q ss_pred ccCCCCcCEE-EccCCcccccCCccCcCCCCCCeEEccCccccccCch-hhcCCCCCCEEECCCCCCCCCCcchh-hccC
Q 041562 313 FSTLLKLRVL-DLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISP-GIVALKSLSFLSLSNNSLTNITGAIR-ILMG 389 (653)
Q Consensus 313 ~~~l~~L~~L-~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~-~l~~ 389 (653)
+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++.... .+..+++|++|++++| ++ ...+. ....
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~--~~~l~~l~~~ 336 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE--DAGLEVLAST 336 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH--HHHHHHHHHH
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC--HHHHHHHHHh
Confidence 5566666666 3332222 23343444556677777766665533222 2345666777777665 22 11111 1223
Q ss_pred CCCCcEEECCC---------CCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhc-CCccCCeeeCc--C----
Q 041562 390 CKNLKVLIIPL---------NFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIG-KLKKLQVLDLS--F---- 453 (653)
Q Consensus 390 l~~L~~L~l~~---------n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls--~---- 453 (653)
+++|+.|++.. +.+++..... ...++++|++|.+..+.+++..+..+. .+++|+.|+++ +
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~----l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVS----VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHHH----HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHHH----HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 56666665532 1221110000 001256666666666666655444443 36667777766 2
Q ss_pred CcCccC-----CchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccc
Q 041562 454 NQLTGS-----VPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILT 528 (653)
Q Consensus 454 n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (653)
+.+++. ++..+..+++|++|++++ .+++..+
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~------------------------------------------- 448 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF------------------------------------------- 448 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH-------------------------------------------
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH-------------------------------------------
Confidence 344321 112245566666666655 3332211
Q ss_pred cccccceeeeCChHHHh-HHhccCeeecCCccCcccccccc-ccCCCCCeEeCCCCeeeeecCc-ccccCCCCCeeecCC
Q 041562 529 FHEQYTWKTTASAAVSL-LRLLLHMLDLSHNNFSGNIPDQI-SQLTNLERMDLSKNHLSGEIPV-SLKRLHFLSAFNVAE 605 (653)
Q Consensus 529 ~~~~~~l~g~ip~~l~~-l~~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~ls~ 605 (653)
..++. ++ .|+.|+|++|.+++..+..+ ..+++|++|+|++|.+++..+. ....+++|++|++++
T Consensus 449 ------------~~l~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 449 ------------EYIGTYAK-KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515 (594)
T ss_dssp ------------HHHHHHCT-TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEES
T ss_pred ------------HHHHHhch-hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeC
Confidence 22222 33 79999999999987766665 6799999999999999765444 345689999999999
Q ss_pred Ccccc
Q 041562 606 NNLRG 610 (653)
Q Consensus 606 N~l~g 610 (653)
|+++.
T Consensus 516 ~~~~~ 520 (594)
T 2p1m_B 516 CSVSF 520 (594)
T ss_dssp SCCBH
T ss_pred CCCCH
Confidence 99853
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=7.8e-27 Score=238.54 Aligned_cols=242 Identities=20% Similarity=0.210 Sum_probs=122.5
Q ss_pred CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcc
Q 041562 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY 252 (653)
Q Consensus 173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 252 (653)
+|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECC
Confidence 33344444443333333334444444444444444443222 444555555555555544211 22455555555
Q ss_pred cCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccccc
Q 041562 253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGS 332 (653)
Q Consensus 253 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~ 332 (653)
+|++++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..+...+..+++|++|++++|.+++.
T Consensus 108 ~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp SSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 5555543322 2345555555555555544445555555666666666555333321223455666666666665533
Q ss_pred CCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCccc
Q 041562 333 LPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDR 412 (653)
Q Consensus 333 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 412 (653)
+ ....+++|++|++++|.+++. +..+..+++|++|++++|.++.++..
T Consensus 185 -~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~----------------------------- 232 (317)
T 3o53_A 185 -K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKA----------------------------- 232 (317)
T ss_dssp -E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTT-----------------------------
T ss_pred -c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhH-----------------------------
Confidence 1 122355666666666666533 33355556666666666655433211
Q ss_pred ccCCCCCCCcCEEEccCCcCc-ccchhhhcCCccCCeeeCcCC-cCccC
Q 041562 413 LTSANGFKNLQVLGLAECKLK-GQVPSWIGKLKKLQVLDLSFN-QLTGS 459 (653)
Q Consensus 413 ~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n-~l~~~ 459 (653)
+..+++|+.|++++|.+. +.+|.++..+++|+.|+++++ .+.+.
T Consensus 233 ---~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 233 ---LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp ---CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred ---hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 124456667777777666 566667777777777777644 34443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.2e-26 Score=247.59 Aligned_cols=220 Identities=23% Similarity=0.269 Sum_probs=151.8
Q ss_pred CCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEE
Q 041562 292 INLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLS 371 (653)
Q Consensus 292 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 371 (653)
++|++|++++|.+++..+ ..+..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISA-ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCG-GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCH-HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 366777777776664333 356666667777777766665444 6666666666666666654321 25566666
Q ss_pred CCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeC
Q 041562 372 LSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDL 451 (653)
Q Consensus 372 Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 451 (653)
+++|.++.++ + ..+++|+.|++++|.+++..|..++.+++|++|++
T Consensus 106 L~~N~l~~~~--------------------------~--------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 106 AANNNISRVS--------------------------C--------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp CCSSCCCCEE--------------------------E--------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred CcCCcCCCCC--------------------------c--------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence 6666555332 2 13467888888888888777777888888888888
Q ss_pred cCCcCccCCchhhc-CCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccccccc
Q 041562 452 SFNQLTGSVPRFLG-NMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFH 530 (653)
Q Consensus 452 s~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (653)
++|++++.+|..+. .+++|++|+|++|.+++..+. ..++
T Consensus 152 s~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--~~l~-------------------------------------- 191 (487)
T 3oja_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VVFA-------------------------------------- 191 (487)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CCCT--------------------------------------
T ss_pred CCCCCCCcChHHHhhhCCcccEEecCCCcccccccc--ccCC--------------------------------------
Confidence 88888887777765 688888888888888754211 1111
Q ss_pred cccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCccc-
Q 041562 531 EQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR- 609 (653)
Q Consensus 531 ~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~- 609 (653)
.|+.|+|++|.+++..| .+..+++|+.|||++|.+++ +|..+..+++|+.|++++|++.
T Consensus 192 ------------------~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 192 ------------------KLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp ------------------TCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred ------------------CCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 67888888888886444 47788888888888888884 6777888888888888888887
Q ss_pred ccCC
Q 041562 610 GSIP 613 (653)
Q Consensus 610 g~iP 613 (653)
+.+|
T Consensus 252 ~~~~ 255 (487)
T 3oja_A 252 GTLR 255 (487)
T ss_dssp HHHH
T ss_pred cchH
Confidence 4444
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=7.8e-26 Score=244.53 Aligned_cols=235 Identities=19% Similarity=0.171 Sum_probs=122.5
Q ss_pred CCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCC
Q 041562 96 NLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSI 174 (653)
Q Consensus 96 ~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L 174 (653)
.+++|++|+|++|.+++..|..+.. ++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-------~~~L 101 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-------GPSI 101 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-------CTTC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-------CCCc
Confidence 3446777777777777655555554 666666666666654333 3445556666666665554331 2455
Q ss_pred CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccC
Q 041562 175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSN 254 (653)
Q Consensus 175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 254 (653)
++|++++|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|
T Consensus 102 ~~L~L~~N~l~~~~~~---------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 102 ETLHAANNNISRVSCS---------------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp CEEECCSSCCCCEEEC---------------------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS
T ss_pred CEEECcCCcCCCCCcc---------------------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC
Confidence 5555555555443222 2344445555555554444444445555555555555
Q ss_pred cCCcccCcccc-CCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccC
Q 041562 255 SLTGLIPRDIG-KLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSL 333 (653)
Q Consensus 255 ~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 333 (653)
.+++..|..+. .+++|++|+|++|.+++.. ....+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++ +
T Consensus 155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~-l 229 (487)
T 3oja_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVL-I 229 (487)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCE-E
T ss_pred CCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcCcc-c
Confidence 55544444443 4455555555555554331 12235555555555555553222 24455555555555555553 4
Q ss_pred CccCcCCCCCCeEEccCcccc-ccCchhhcCCCCCCEEEC
Q 041562 334 PITLNSCKSLTAVNLARNQLE-GQISPGIVALKSLSFLSL 372 (653)
Q Consensus 334 ~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L 372 (653)
|..+..+++|+.|++++|.+. +.+|.++..++.|+.+++
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 445555556666666666555 444455555555555554
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.8e-23 Score=209.23 Aligned_cols=204 Identities=23% Similarity=0.219 Sum_probs=89.1
Q ss_pred CCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEe
Q 041562 147 NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLS 226 (653)
Q Consensus 147 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 226 (653)
+|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFF--SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTT--TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCcccccCHhHhc--cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 344444444444443332221 344455555555544444444444455555555555554444444444445555555
Q ss_pred ccCCcCcccccccccCCCCCcEEEcccCcCCcc-cCccccCCCCCCeEEeecCcCcccCCccccCCCCCc----EEEccC
Q 041562 227 LSFNHISGSIKNGIVNLTSLRILELYSNSLTGL-IPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLT----LLNLQS 301 (653)
Q Consensus 227 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~ 301 (653)
+++|.+.+..+..+..+++|++|++++|++++. +|..++.+++|++|++++|++++..+..+..+++|+ +|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 555544443333444445555555555544432 244444445555555555544443333333333333 444444
Q ss_pred CcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccc
Q 041562 302 NFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE 354 (653)
Q Consensus 302 n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 354 (653)
|.+++ ++...+ ...+|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 187 n~l~~-~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 187 NPMNF-IQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCCE-ECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred Ccccc-cCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 44442 221111 1224444444444444333333344444444444444443
No 75
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.91 E-value=7.7e-26 Score=233.39 Aligned_cols=237 Identities=18% Similarity=0.194 Sum_probs=152.6
Q ss_pred CCCCccccceEeCCCCCEEEEEcCCCCcceeccccccCC--CCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCC
Q 041562 59 STDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNL--THLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGK 136 (653)
Q Consensus 59 ~~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l--~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ 136 (653)
+.-|.+|.++.|+ ...++.++++++.+. +..+..+ +++++|++++|.+.+..+..+..++|++|++++|.+++.
T Consensus 33 ~~vc~~W~~~~~~-~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 33 SGVCKRWYRLASD-ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp TSSCHHHHHHHTC-STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHHHhcC-chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH
Confidence 3456689999987 346888999988776 4556666 889999999999988877766568888888888887754
Q ss_pred -CchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCC-cCcc-CCCccCCCCCCCCEEEcccC-CCCCC-
Q 041562 137 -IPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNN-RFTG-PVPLGLGSCSRLKTFRAGFN-YLTGS- 211 (653)
Q Consensus 137 -ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~n-~l~~~- 211 (653)
+|. ++..+++|++|++++|.+++..+..+. .+++|++|++++| .+++ .++..+..+++|++|++++| .+++.
T Consensus 109 ~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~--~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 109 TLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLA--KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp HHHH-HHTTBCCCSEEECTTCBCCHHHHHHHT--TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred HHHH-HHhhCCCCCEEeCcCcccCHHHHHHHh--cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 443 455677888888887777665554443 4677777777777 4554 24444556666666666666 66543
Q ss_pred ccccccCCC-CCCEEeccCC--cCc-ccccccccCCCCCcEEEcccCc-CCcccCccccCCCCCCeEEeecCc-CcccCC
Q 041562 212 LPDDIYTAT-SLEQLSLSFN--HIS-GSIKNGIVNLTSLRILELYSNS-LTGLIPRDIGKLTNLESLVLHNNS-LSGSLP 285 (653)
Q Consensus 212 ~p~~l~~l~-~L~~L~Ls~n--~i~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p 285 (653)
++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..++.+++|++|++++|. +.....
T Consensus 186 ~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 265 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 265 (336)
T ss_dssp HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH
Confidence 455555666 6666666666 333 3344555566666666666666 444445555666666666666653 221111
Q ss_pred ccccCCCCCcEEEccCC
Q 041562 286 SSLKNCINLTLLNLQSN 302 (653)
Q Consensus 286 ~~l~~l~~L~~L~L~~n 302 (653)
..+.++++|++|++++|
T Consensus 266 ~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 266 LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGCTTCCEEECTTS
T ss_pred HHHhcCCCCCEEeccCc
Confidence 23455555555555555
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=6.5e-23 Score=205.16 Aligned_cols=205 Identities=25% Similarity=0.221 Sum_probs=155.8
Q ss_pred CCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEc
Q 041562 172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILEL 251 (653)
Q Consensus 172 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 251 (653)
++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46888888888888777778888888888888888888666667888888888888888888777778888888888888
Q ss_pred ccCcCCcccCccccCCCCCCeEEeecCcCccc-CCccccCCCCCcEEEccCCcCccccChhhccCCCCcC----EEEccC
Q 041562 252 YSNSLTGLIPRDIGKLTNLESLVLHNNSLSGS-LPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLR----VLDLGS 326 (653)
Q Consensus 252 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~----~L~L~~ 326 (653)
++|++.+..+..++.+++|++|++++|.+++. +|..+..+++|++|++++|.+++ ++...+..+++|+ .|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHHhhhhhhccccceeeecCC
Confidence 88888877666788888888888888888753 57788888888888888888874 3333455555555 788888
Q ss_pred CcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562 327 NLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT 378 (653)
Q Consensus 327 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 378 (653)
|.+++..+..+. ..+|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 887754444443 347777888877777655555667777777777777765
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=2.4e-22 Score=200.21 Aligned_cols=201 Identities=23% Similarity=0.243 Sum_probs=102.8
Q ss_pred CCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEccc
Q 041562 174 IRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS 253 (653)
Q Consensus 174 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 253 (653)
.++++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.++...+..+.++++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 344444444444 2333222 3445555555555443333455555555555555555433333345555555555555
Q ss_pred CcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccC
Q 041562 254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSL 333 (653)
Q Consensus 254 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 333 (653)
|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeC
Confidence 5555444444555555555555555555444444555555555555555555 233334555555555555555555444
Q ss_pred CccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562 334 PITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT 378 (653)
Q Consensus 334 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 378 (653)
+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 444555555666666665555444444555555666666555543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.5e-22 Score=201.94 Aligned_cols=204 Identities=23% Similarity=0.272 Sum_probs=144.3
Q ss_pred cccCCCCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCC
Q 041562 93 SIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFC 172 (653)
Q Consensus 93 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~ 172 (653)
.+.+++++++++++++.++ .+|..+. +++++|+|++|.++ .++...+..+++|++|++++|.+++..+. ..++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~-~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~ 77 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP-KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLP 77 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC-TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCT
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC-CCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC----CCCC
Confidence 4677888999999998887 4554443 67888888888887 44445566688888888888888776543 2577
Q ss_pred CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcc
Q 041562 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY 252 (653)
Q Consensus 173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 252 (653)
+|++|++++|.++ .+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 7888888888776 566667777777777777777775555667777777777777777776555566677777777777
Q ss_pred cCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCc
Q 041562 253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFE 305 (653)
Q Consensus 253 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 305 (653)
+|++++..+..+..+++|++|+|++|+++ .+|..+...++|+.|++++|.+.
T Consensus 157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 77776555455566777777777777776 55666666666666666666654
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=8.4e-23 Score=203.73 Aligned_cols=184 Identities=23% Similarity=0.197 Sum_probs=87.8
Q ss_pred CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE 250 (653)
Q Consensus 171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 250 (653)
+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 62 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 34444444444444321 2344444444444444444433333344444455555555544444444444555555555
Q ss_pred cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562 251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330 (653)
Q Consensus 251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 330 (653)
+++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCCcc
Confidence 55555554444444455555555555555554444444555555555555555553222 23455555555555555443
Q ss_pred ccCCccCcCCCCCCeEEccCccccccCchhhcCC
Q 041562 331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVAL 364 (653)
Q Consensus 331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 364 (653)
+ .+++|+.++++.|.++|.+|.+++.+
T Consensus 219 ~-------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 219 C-------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp C-------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred c-------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 2 23345555555555555555555443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.4e-22 Score=202.22 Aligned_cols=228 Identities=19% Similarity=0.180 Sum_probs=174.2
Q ss_pred CCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEE
Q 041562 99 HLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLD 178 (653)
Q Consensus 99 ~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~ 178 (653)
++..+++..+.+.+... .-..++|+.|++++|.++ .++. +..+++|++|++++|.+++.. . ...+++|++|+
T Consensus 20 ~l~~l~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~--~--l~~l~~L~~L~ 91 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT-QNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS--A--LKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHTCSCTTSEEC-HHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCG--G--GTTCTTCCEEE
T ss_pred HHHHHHhcCcccccccc-cccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCch--h--hcCCCCCCEEE
Confidence 34445555555553321 111278888888888887 4553 456888888888888887742 2 23688888888
Q ss_pred ccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCc
Q 041562 179 LSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTG 258 (653)
Q Consensus 179 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 258 (653)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 88888887777778888888888888888887666677888888888888888887666777888888888888888887
Q ss_pred ccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCc
Q 041562 259 LIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLN 338 (653)
Q Consensus 259 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 338 (653)
..+..++.+++|++|++++|++++..+..+..+++|++|++++|.+.+. +++|+.++++.|.++|.+|.+++
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHHHhCCCcccCccc
Confidence 7776778888888888888888877777788888888888888877643 45678888888888888888777
Q ss_pred CCCC
Q 041562 339 SCKS 342 (653)
Q Consensus 339 ~l~~ 342 (653)
.+..
T Consensus 244 ~~~~ 247 (272)
T 3rfs_A 244 SVAP 247 (272)
T ss_dssp CBCG
T ss_pred ccCC
Confidence 5543
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=9.1e-22 Score=197.81 Aligned_cols=201 Identities=23% Similarity=0.188 Sum_probs=113.2
Q ss_pred CCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEE
Q 041562 170 SFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL 249 (653)
Q Consensus 170 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 249 (653)
+++++++++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++. +. .+.+++|++|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEE
Confidence 3445555555555554 3333332 4555555555555555555555566666666666655532 22 1455666666
Q ss_pred EcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562 250 ELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF 329 (653)
Q Consensus 250 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 329 (653)
++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.++ .++...|..+++|+.|++++|++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcC
Confidence 66666665 34555556666666666666666554455666666666666666665 33333455566666666666666
Q ss_pred cccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562 330 TGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT 378 (653)
Q Consensus 330 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 378 (653)
++..+..+..+++|+.|++++|+++ .+|..+....+|+.+++++|.+.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 6444444555666666666666665 45555555556666666666554
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=4.2e-23 Score=210.17 Aligned_cols=201 Identities=21% Similarity=0.177 Sum_probs=95.6
Q ss_pred CCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCC----ccCCCCCCCCEEEcccCCCCCCccccccCCCCC
Q 041562 147 NLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVP----LGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSL 222 (653)
Q Consensus 147 ~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 222 (653)
+|++|++++|.+++..|..+....+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 3444444444444444433211234444444444444443322 223344455555555555544444445555555
Q ss_pred CEEeccCCcCccc--c--cccccCCCCCcEEEcccCcCCcccCc----cccCCCCCCeEEeecCcCcccCCccccCC---
Q 041562 223 EQLSLSFNHISGS--I--KNGIVNLTSLRILELYSNSLTGLIPR----DIGKLTNLESLVLHNNSLSGSLPSSLKNC--- 291 (653)
Q Consensus 223 ~~L~Ls~n~i~~~--~--~~~l~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--- 291 (653)
++|++++|++.+. + +..+..+++|++|++++|+++.. +. .++.+++|++|+|++|++++..|..+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 5555555544321 1 11224455555555555555421 11 13444555555555555554444444444
Q ss_pred CCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccc
Q 041562 292 INLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLE 354 (653)
Q Consensus 292 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 354 (653)
++|++|++++|.++ .+|. .+ .++|++|++++|++++. |. +..+++|+.|++++|.++
T Consensus 251 ~~L~~L~Ls~N~l~-~lp~-~~--~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVPK-GL--PAKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp TTCCCEECCSSCCC-SCCS-CC--CSCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CcCCEEECCCCCCC-chhh-hh--cCCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 35555555555555 4442 12 14566666666666532 22 445566666666666654
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=5.5e-22 Score=195.35 Aligned_cols=136 Identities=24% Similarity=0.235 Sum_probs=74.3
Q ss_pred CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE 250 (653)
Q Consensus 171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 250 (653)
+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 44444444444444444444455555555555555555544444455555555555555555544444455556666666
Q ss_pred cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCcc
Q 041562 251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEG 306 (653)
Q Consensus 251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 306 (653)
+++|++++..+..|+.+++|++|+|++|++++..+..+..+++|++|++++|.+.+
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 66666655444455556666666666666655544455555666666666665554
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.6e-23 Score=218.05 Aligned_cols=83 Identities=17% Similarity=0.164 Sum_probs=39.4
Q ss_pred EEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCC----ccccC-C-CcCEEEccCCCCCCCCchHHHhc----CCCC
Q 041562 79 LWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFP----SSLSS-N-YIKIIDLSSNHFQGKIPSTIFRL----TQNL 148 (653)
Q Consensus 79 L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p----~~~~~-~-~L~~L~Ls~n~l~~~ip~~~~~~----l~~L 148 (653)
.+++.++++|.+|..+...++|++|||++|.+++..+ ..+.. + +|++|+|++|.+++..+..+... .++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4455555555555555555556666666665554443 22222 3 45555555555543333322221 1444
Q ss_pred cEEEccCCcCccc
Q 041562 149 ITFNVSNNSFTGL 161 (653)
Q Consensus 149 ~~L~Ls~n~l~~~ 161 (653)
++|++++|.+++.
T Consensus 83 ~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 83 TSLNLSGNFLSYK 95 (362)
T ss_dssp CEEECCSSCGGGS
T ss_pred cEEECcCCcCChH
Confidence 4444444444443
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.5e-23 Score=220.55 Aligned_cols=237 Identities=22% Similarity=0.261 Sum_probs=140.6
Q ss_pred cCCCCcEEEccCCcCcccCChhhh--hcCCCCCCEEEccCCc---CccCCCccC-------CCCCCCCEEEcccCCCCC-
Q 041562 144 LTQNLITFNVSNNSFTGLISWSAW--VDSFCSIRHLDLSNNR---FTGPVPLGL-------GSCSRLKTFRAGFNYLTG- 210 (653)
Q Consensus 144 ~l~~L~~L~Ls~n~l~~~~~~~~~--~~~l~~L~~L~Ls~n~---l~~~~~~~~-------~~l~~L~~L~L~~n~l~~- 210 (653)
.+++|++|++++|.+++..+..+. ...+++|++|++++|. +++.+|..+ ..+++|++|++++|.+++
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 355666666666665554332221 2245666666666643 333334333 566677777777776665
Q ss_pred ---CccccccCCCCCCEEeccCCcCcccccccc----cCC---------CCCcEEEcccCcCC-cccC---ccccCCCCC
Q 041562 211 ---SLPDDIYTATSLEQLSLSFNHISGSIKNGI----VNL---------TSLRILELYSNSLT-GLIP---RDIGKLTNL 270 (653)
Q Consensus 211 ---~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l----~~l---------~~L~~L~L~~n~l~-~~~p---~~l~~l~~L 270 (653)
.+|..+..+++|++|+|++|.+.+..+..+ ..+ ++|++|++++|+++ +.++ ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 355566667777777777777654333322 233 67777777777765 2333 345566677
Q ss_pred CeEEeecCcCcc-----cCCccccCCCCCcEEEccCCcCc----cccChhhccCCCCcCEEEccCCccccc----CCccC
Q 041562 271 ESLVLHNNSLSG-----SLPSSLKNCINLTLLNLQSNFFE----GDISVFNFSTLLKLRVLDLGSNLFTGS----LPITL 337 (653)
Q Consensus 271 ~~L~L~~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~----~~i~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l 337 (653)
++|++++|+++. ..+..+..+++|++|++++|.++ +.++. .+..+++|++|++++|.+++. ++..+
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 777777776652 23335666777777777777764 33443 456667777777777776654 34444
Q ss_pred --cCCCCCCeEEccCccccc----cCchhh-cCCCCCCEEECCCCCCCCCC
Q 041562 338 --NSCKSLTAVNLARNQLEG----QISPGI-VALKSLSFLSLSNNSLTNIT 381 (653)
Q Consensus 338 --~~l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~Ls~n~l~~~~ 381 (653)
+.+++|++|+|++|.+++ .+|..+ ..+++|++|++++|.++...
T Consensus 269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 236777777777777765 355555 44677777777777766443
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=3.9e-23 Score=215.15 Aligned_cols=176 Identities=23% Similarity=0.238 Sum_probs=80.9
Q ss_pred EcccCCCCCCccccccCCCCCCEEeccCCcCccccc----ccccCCC-CCcEEEcccCcCCcccCccccCC-----CCCC
Q 041562 202 RAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIK----NGIVNLT-SLRILELYSNSLTGLIPRDIGKL-----TNLE 271 (653)
Q Consensus 202 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~L~ 271 (653)
+++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|++++..+..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 344444444444444444445555555555544333 3444444 45555555555554444333332 5555
Q ss_pred eEEeecCcCcccCCccc----cCC-CCCcEEEccCCcCccccChhh----ccC-CCCcCEEEccCCcccccC----CccC
Q 041562 272 SLVLHNNSLSGSLPSSL----KNC-INLTLLNLQSNFFEGDISVFN----FST-LLKLRVLDLGSNLFTGSL----PITL 337 (653)
Q Consensus 272 ~L~L~~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~~i~~~~----~~~-l~~L~~L~L~~n~l~~~~----~~~l 337 (653)
+|+|++|.+++..+..+ ..+ ++|++|++++|.+++..+ .. +.. .++|++|++++|.+++.. +..+
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS-SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH-HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 55555555544333322 222 455555555555542211 11 222 235555555555555322 2222
Q ss_pred cCCC-CCCeEEccCccccccCchhhc----CC-CCCCEEECCCCCCC
Q 041562 338 NSCK-SLTAVNLARNQLEGQISPGIV----AL-KSLSFLSLSNNSLT 378 (653)
Q Consensus 338 ~~l~-~L~~L~L~~n~l~~~~~~~l~----~l-~~L~~L~Ls~n~l~ 378 (653)
...+ +|++|++++|.+++..+..+. .. ++|++|++++|.++
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 3333 555566665555544443222 23 35556666555554
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=2.3e-23 Score=214.84 Aligned_cols=224 Identities=15% Similarity=0.194 Sum_probs=117.0
Q ss_pred CCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCccc-CChhhhhcCCCCCCEE
Q 041562 99 HLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGL-ISWSAWVDSFCSIRHL 177 (653)
Q Consensus 99 ~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~l~~L~~L 177 (653)
.++.+|++++.+.......+..+++++|++++|.+.+..+. ++ .+++|++|++++|.+++. ++..+ ..+++|++|
T Consensus 48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~--~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGIL--SQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHH--TTBCCCSEE
T ss_pred hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHH--hhCCCCCEE
Confidence 36677777766652111111115666666666666654443 22 356666666666665543 32222 245666666
Q ss_pred EccCCcCccCCCccCCCCCCCCEEEcccC-CCCC-CccccccCCCCCCEEeccCC-cCccc-ccccccCCC-CCcEEEcc
Q 041562 178 DLSNNRFTGPVPLGLGSCSRLKTFRAGFN-YLTG-SLPDDIYTATSLEQLSLSFN-HISGS-IKNGIVNLT-SLRILELY 252 (653)
Q Consensus 178 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~Ls~n-~i~~~-~~~~l~~l~-~L~~L~L~ 252 (653)
++++|.+++..+..++.+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 66666655555555555666666666665 4443 24444555566666666666 55532 344455555 56666666
Q ss_pred cC--cCC-cccCccccCCCCCCeEEeecCc-CcccCCccccCCCCCcEEEccCCc-CccccChhhccCCCCcCEEEccCC
Q 041562 253 SN--SLT-GLIPRDIGKLTNLESLVLHNNS-LSGSLPSSLKNCINLTLLNLQSNF-FEGDISVFNFSTLLKLRVLDLGSN 327 (653)
Q Consensus 253 ~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~-l~~~i~~~~~~~l~~L~~L~L~~n 327 (653)
+| .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|. +. ......+..+++|++|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII-PETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC-GGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC-HHHHHHHhcCCCCCEEeccCc
Confidence 55 333 2334444555556666665555 444444455555555555555553 11 111113444555555555555
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.5e-23 Score=220.43 Aligned_cols=248 Identities=24% Similarity=0.328 Sum_probs=148.8
Q ss_pred CccccccCCCCCCEEeccCCcCccccc----ccccCCCCCcEEEcccC---cCCcccCccc-------cCCCCCCeEEee
Q 041562 211 SLPDDIYTATSLEQLSLSFNHISGSIK----NGIVNLTSLRILELYSN---SLTGLIPRDI-------GKLTNLESLVLH 276 (653)
Q Consensus 211 ~~p~~l~~l~~L~~L~Ls~n~i~~~~~----~~l~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~L~ 276 (653)
.++..+..+++|++|+|++|.+.+..+ ..+..+++|++|++++| ++++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 355566677788888888887776533 34667778888888775 3344445444 566777777777
Q ss_pred cCcCcc----cCCccccCCCCCcEEEccCCcCccccCh---hhccCC---------CCcCEEEccCCccc-ccCC---cc
Q 041562 277 NNSLSG----SLPSSLKNCINLTLLNLQSNFFEGDISV---FNFSTL---------LKLRVLDLGSNLFT-GSLP---IT 336 (653)
Q Consensus 277 ~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~i~~---~~~~~l---------~~L~~L~L~~n~l~-~~~~---~~ 336 (653)
+|.+.+ .+|..+..+++|++|++++|.+++..+. ..+..+ ++|++|++++|.++ +.++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 777765 3555666677777777777766532111 012222 56666666666654 2222 23
Q ss_pred CcCCCCCCeEEccCccccc-----cCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcc
Q 041562 337 LNSCKSLTAVNLARNQLEG-----QISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDND 411 (653)
Q Consensus 337 l~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~ 411 (653)
+..+++|++|++++|.++. ..+..+..+++|++|+|++|.++... ...++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g----------------------~~~l~~-- 238 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----------------------SSALAI-- 238 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----------------------HHHHHH--
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH----------------------HHHHHH--
Confidence 4445555555555555542 12224445555555555555542100 011221
Q ss_pred cccCCCCCCCcCEEEccCCcCccc----chhhhcC--CccCCeeeCcCCcCcc----CCchhh-cCCCCCCEEEccCCcC
Q 041562 412 RLTSANGFKNLQVLGLAECKLKGQ----VPSWIGK--LKKLQVLDLSFNQLTG----SVPRFL-GNMSSLFHIDFSNNLI 480 (653)
Q Consensus 412 ~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~--l~~L~~L~Ls~n~l~~----~~~~~~-~~l~~L~~L~Ls~N~l 480 (653)
.+..+++|++|+|++|.+++. ++..+.. +++|++|+|++|++++ .+|..+ .++++|++|++++|++
T Consensus 239 ---~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 239 ---ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp ---HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred ---HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 123456777888888887754 4566633 7888888888888886 366666 5678888888888888
Q ss_pred cccCC
Q 041562 481 SGEFP 485 (653)
Q Consensus 481 ~~~~p 485 (653)
++..+
T Consensus 316 ~~~~~ 320 (386)
T 2ca6_A 316 SEEDD 320 (386)
T ss_dssp CTTSH
T ss_pred Ccchh
Confidence 86654
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=2.4e-21 Score=189.26 Aligned_cols=196 Identities=15% Similarity=0.227 Sum_probs=115.1
Q ss_pred CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCC-CCCCccccccCCCCCCEEeccC-CcCcccccccccCCCCCcEEE
Q 041562 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNY-LTGSLPDDIYTATSLEQLSLSF-NHISGSIKNGIVNLTSLRILE 250 (653)
Q Consensus 173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~ 250 (653)
+|++|++++|++++..+..+..+++|++|++++|. +++..+..|..+++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 34455555555544444455555666666666664 5433334556666666666666 666654455666666666666
Q ss_pred cccCcCCcccCccccCCCCCC---eEEeecC-cCcccCCccccCCCCCc-EEEccCCcCccccChhhccCCCCcCEEEcc
Q 041562 251 LYSNSLTGLIPRDIGKLTNLE---SLVLHNN-SLSGSLPSSLKNCINLT-LLNLQSNFFEGDISVFNFSTLLKLRVLDLG 325 (653)
Q Consensus 251 L~~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~ 325 (653)
+++|++++ +|. ++.+++|+ +|++++| .+++..+..|.++++|+ +|++++|.++ .++...+.. ++|++|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcC
Confidence 66666664 443 66666666 6777776 66655555566666676 7777776666 555434444 566666666
Q ss_pred CCc-ccccCCccCcCC-CCCCeEEccCccccccCchhhcCCCCCCEEECCCC
Q 041562 326 SNL-FTGSLPITLNSC-KSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNN 375 (653)
Q Consensus 326 ~n~-l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n 375 (653)
+|. +++..+..+..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 663 665445556666 666666666666653 2322 4555666665544
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=4.6e-22 Score=202.45 Aligned_cols=136 Identities=17% Similarity=0.189 Sum_probs=77.0
Q ss_pred CCCcEEEccCCcCcccCChhh-hhcCCCCCCEEEccCCcCccCCCccC--CCCCCCCEEEcccCCCCCCcc----ccccC
Q 041562 146 QNLITFNVSNNSFTGLISWSA-WVDSFCSIRHLDLSNNRFTGPVPLGL--GSCSRLKTFRAGFNYLTGSLP----DDIYT 218 (653)
Q Consensus 146 ~~L~~L~Ls~n~l~~~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~ 218 (653)
..++.+.+.++.++...-..+ ....+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 457788888777653211111 01124568888888888777777766 677777777777777765433 22344
Q ss_pred CCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcc--c--CccccCCCCCCeEEeecCcCc
Q 041562 219 ATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGL--I--PRDIGKLTNLESLVLHNNSLS 281 (653)
Q Consensus 219 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~L~~n~l~ 281 (653)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..++.+++|++|++++|+++
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 210 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME 210 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC
Confidence 55666666666665555555555555555555555554431 1 112234455555555555543
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=5e-21 Score=187.04 Aligned_cols=189 Identities=22% Similarity=0.259 Sum_probs=140.5
Q ss_pred CCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCc-CcccccccccCCCCCcEEEccc-CcCCcccCccc
Q 041562 187 PVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH-ISGSIKNGIVNLTSLRILELYS-NSLTGLIPRDI 264 (653)
Q Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l 264 (653)
.+|. +. ++|++|++++|.+++..+..+..+++|++|++++|. ++...+..+.++++|++|++++ |++++..+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4555 33 378888888888886666678888888888888886 7755556788888888888887 88887666778
Q ss_pred cCCCCCCeEEeecCcCcccCCccccCCCCCc---EEEccCC-cCccccChhhccCCCCcC-EEEccCCcccccCCccCcC
Q 041562 265 GKLTNLESLVLHNNSLSGSLPSSLKNCINLT---LLNLQSN-FFEGDISVFNFSTLLKLR-VLDLGSNLFTGSLPITLNS 339 (653)
Q Consensus 265 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~---~L~L~~n-~l~~~i~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~ 339 (653)
..+++|++|++++|++++ +|. +..+++|+ +|++++| .++ .++...|..+++|+ +|++++|.++ .+|.....
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~ 177 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFN 177 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCC-EECTTTTT
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCc-ccCHhhcC
Confidence 888888888888888875 565 77777777 8888888 776 45545677788888 8888888887 44443333
Q ss_pred CCCCCeEEccCcc-ccccCchhhcCC-CCCCEEECCCCCCCCCCc
Q 041562 340 CKSLTAVNLARNQ-LEGQISPGIVAL-KSLSFLSLSNNSLTNITG 382 (653)
Q Consensus 340 l~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~ 382 (653)
.++|++|++++|+ +++..+..+..+ ++|++|++++|+++.++.
T Consensus 178 ~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~ 222 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222 (239)
T ss_dssp TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC
T ss_pred CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh
Confidence 3778888888884 776666667777 788888888887776553
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.4e-20 Score=183.54 Aligned_cols=178 Identities=22% Similarity=0.262 Sum_probs=87.3
Q ss_pred CCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEccc
Q 041562 174 IRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS 253 (653)
Q Consensus 174 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 253 (653)
.++++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 344555555444 2333332 3455555555555544444455555555555555555544444455555555555555
Q ss_pred CcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccC
Q 041562 254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSL 333 (653)
Q Consensus 254 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 333 (653)
|++++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 5555444444455555555555555555443334445555555555555554 222223444555555555555555444
Q ss_pred CccCcCCCCCCeEEccCccccc
Q 041562 334 PITLNSCKSLTAVNLARNQLEG 355 (653)
Q Consensus 334 ~~~l~~l~~L~~L~L~~n~l~~ 355 (653)
+..+..+++|+.|++++|.+.+
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCT
T ss_pred HHHHhCCCCCCEEEeeCCceeC
Confidence 4444445555555555555443
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1.1e-20 Score=191.83 Aligned_cols=193 Identities=25% Similarity=0.329 Sum_probs=108.9
Q ss_pred CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE 250 (653)
Q Consensus 171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 250 (653)
+++|++|++++|.++. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+. ..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 4455555555555542 22 355555566666665555532 22 55566666666666665532 2455666666666
Q ss_pred cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562 251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330 (653)
Q Consensus 251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 330 (653)
+++|++++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|.++
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LT--PLANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Ch--hhcCCCCCCEEECCCCccC
Confidence 666666543 2 25566666666666666653322 5566666666666666652 33 2556666666666666665
Q ss_pred ccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCC
Q 041562 331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNI 380 (653)
Q Consensus 331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 380 (653)
+..+ +..+++|++|++++|++++.. .+..+++|++|++++|.++..
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence 4322 555666666666666665433 256666666666666666543
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.1e-20 Score=189.69 Aligned_cols=147 Identities=23% Similarity=0.351 Sum_probs=75.5
Q ss_pred CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE 250 (653)
Q Consensus 171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 250 (653)
+++|++|++++|.+++. ..+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 84 l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~ 157 (308)
T 1h6u_A 84 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLS 157 (308)
T ss_dssp CCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred CCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEE
Confidence 44444444444444321 134444555555555555443 22 24555555555555555553222 55555555666
Q ss_pred cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562 251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330 (653)
Q Consensus 251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 330 (653)
+++|++++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|.++
T Consensus 158 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 158 IGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-VS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CG--GGTTCTTCCEEEEEEEEEE
T ss_pred ccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc-cc--cccCCCCCCEEEccCCeee
Confidence 65555554322 5555666666666666553322 5556666666666666653 22 2455666666666666655
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=2.6e-21 Score=210.78 Aligned_cols=203 Identities=24% Similarity=0.321 Sum_probs=124.4
Q ss_pred CCCCCCCCc-----cccce-EeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccCCCcCEEEc
Q 041562 55 NWSSSTDCC-----LWEGI-KCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDL 128 (653)
Q Consensus 55 ~W~~~~~~c-----~w~gv-~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~L 128 (653)
+|..+.++| .|.|+ .|. .++++.|+++++++++ +|..+. ++|++|+|++|.++ .+|. ..++|++|+|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip~--~l~~L~~L~L 107 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLPE--LPASLEYLDA 107 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCCC--CCTTCCEEEC
T ss_pred HHhccCCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-cccc--ccCCCCEEEc
Confidence 365455667 79999 785 3578889999988887 776663 78888888888887 5551 1277788888
Q ss_pred cCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCC
Q 041562 129 SSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYL 208 (653)
Q Consensus 129 s~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 208 (653)
++|.+++ +|. +. .+|++|++++|.+++..+ .+++|++|++++|.+++ +|. .+++|++|++++|.+
T Consensus 108 s~N~l~~-ip~-l~---~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 108 CDNRLST-LPE-LP---ASLKHLDVDNNQLTMLPE------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp CSSCCSC-CCC-CC---TTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred cCCCCCC-cch-hh---cCCCEEECCCCcCCCCCC------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC
Confidence 8887774 666 22 267777777777776332 35667777777776664 443 455666666666666
Q ss_pred CCCccccccCCCCCCEEeccCCcCcccccccccCCCCC-------cEEEcccCcCCcccCccccCCCCCCeEEeecCcCc
Q 041562 209 TGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSL-------RILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLS 281 (653)
Q Consensus 209 ~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L-------~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 281 (653)
++ +|. +. ++|++|+|++|.|+ .+|. +.. +| ++|++++|+++ .+|..+..+++|+.|+|++|.++
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred CC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 64 454 43 56666666666665 3444 332 34 55555555554 23444444555555555555554
Q ss_pred ccCCccc
Q 041562 282 GSLPSSL 288 (653)
Q Consensus 282 ~~~p~~l 288 (653)
+.+|..+
T Consensus 244 ~~~p~~l 250 (571)
T 3cvr_A 244 SRIRESL 250 (571)
T ss_dssp HHHHHHH
T ss_pred CcCHHHH
Confidence 4444443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=2e-20 Score=178.56 Aligned_cols=182 Identities=20% Similarity=0.262 Sum_probs=101.1
Q ss_pred CccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCCCCCCchH
Q 041562 62 CCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHFQGKIPST 140 (653)
Q Consensus 62 ~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~ 140 (653)
.|.|.+|.|+..+ ++ .+|..+ .++|++|++++|.+++..+..+.. ++|++|++++|+++ .+|..
T Consensus 6 ~C~~~~v~c~~~~-----------l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~ 70 (208)
T 2o6s_A 6 SCSGTTVECYSQG-----------RT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNG 70 (208)
T ss_dssp EEETTEEECCSSC-----------CS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTT
T ss_pred EECCCEEEecCCC-----------cc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChh
Confidence 3789999997432 22 233322 357888888888887655555544 67777777777776 55555
Q ss_pred HHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCC
Q 041562 141 IFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTAT 220 (653)
Q Consensus 141 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 220 (653)
.+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++
T Consensus 71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 71 VFNKLTSLTYLNLSTNQLQSLPNGVFD--KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hcCCCCCcCEEECCCCcCCccCHhHhc--CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCC
Confidence 555566666666666666554433221 455555555555555544444455555555555555555543333344455
Q ss_pred CCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCC
Q 041562 221 SLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKL 267 (653)
Q Consensus 221 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 267 (653)
+|++|++++|.+.+ .+++|++|+++.|+++|.+|..++.+
T Consensus 149 ~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 149 SLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp TCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 55555555554332 23344445555555555444444433
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=5.5e-20 Score=190.34 Aligned_cols=202 Identities=20% Similarity=0.189 Sum_probs=114.4
Q ss_pred CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCccccc-ccccCCCCCcE-EEcc
Q 041562 175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIK-NGIVNLTSLRI-LELY 252 (653)
Q Consensus 175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~-L~L~ 252 (653)
++++.++++++ .+|..+ .+++++|++++|+++...+.+|.++++|++|+|++|.+.+.++ .+|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666666665 445444 2456666666666663333456666666666666666654444 34566666554 4445
Q ss_pred cCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCC-cCccccChhhccCCC-CcCEEEccCCccc
Q 041562 253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSN-FFEGDISVFNFSTLL-KLRVLDLGSNLFT 330 (653)
Q Consensus 253 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~i~~~~~~~l~-~L~~L~L~~n~l~ 330 (653)
.|+++...|..|..+++|++|++++|++.+..+..+....++..|++.++ .+. .++...|..+. .++.|++++|.++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccccc
Confidence 56666665666667777777777777766554444555556666666543 333 44443444443 4666666666666
Q ss_pred ccCCccCcCCCCCCeEEccC-ccccccCchhhcCCCCCCEEECCCCCCCCCC
Q 041562 331 GSLPITLNSCKSLTAVNLAR-NQLEGQISPGIVALKSLSFLSLSNNSLTNIT 381 (653)
Q Consensus 331 ~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 381 (653)
. ++.......+|+++++.+ |.++...+..|..+++|++|++++|+++.++
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 3 333333445566666654 4444332334556666666666666665544
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.2e-19 Score=187.94 Aligned_cols=105 Identities=12% Similarity=0.119 Sum_probs=50.4
Q ss_pred CEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCE-EEc
Q 041562 101 SHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRH-LDL 179 (653)
Q Consensus 101 ~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~-L~L 179 (653)
++++.++++++ .+|..+ .+++++|+|++|+|+ .+|...|..+++|++|+|++|.+.+.++...+. +++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l-~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~-~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS-NLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC-CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBC-SCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc-CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhh-cchhhhhhhcc
Confidence 45666666665 344433 145566666666665 555555555555555555555554443332211 3333332 333
Q ss_pred cCCcCccCCCccCCCCCCCCEEEcccCCCC
Q 041562 180 SNNRFTGPVPLGLGSCSRLKTFRAGFNYLT 209 (653)
Q Consensus 180 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (653)
+.|+++...|..|..+++|++|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred cCCcccccCchhhhhccccccccccccccc
Confidence 334444444444444444444444444444
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.4e-19 Score=172.57 Aligned_cols=160 Identities=25% Similarity=0.205 Sum_probs=81.5
Q ss_pred CCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcc
Q 041562 173 SIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY 252 (653)
Q Consensus 173 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 252 (653)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 45555555555554444444555555555555555553333334555555555555555554444445555555555555
Q ss_pred cCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccccc
Q 041562 253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGS 332 (653)
Q Consensus 253 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~ 332 (653)
+|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|.++|.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTTT
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCce
Confidence 555554444445555555555555555554444445555555555555554432 223445555555555555
Q ss_pred CCccCcCC
Q 041562 333 LPITLNSC 340 (653)
Q Consensus 333 ~~~~l~~l 340 (653)
+|.+++.+
T Consensus 181 ip~~~~~l 188 (208)
T 2o6s_A 181 VRNSAGSV 188 (208)
T ss_dssp BBCTTSSB
T ss_pred eeccCccc
Confidence 55544433
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=9e-19 Score=190.79 Aligned_cols=166 Identities=25% Similarity=0.339 Sum_probs=82.8
Q ss_pred CCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEc
Q 041562 172 CSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILEL 251 (653)
Q Consensus 172 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L 251 (653)
++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 34444444444444 233 234445555555554443 443 332 45555555555543 333 3455555555
Q ss_pred ccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCc-------CEEEc
Q 041562 252 YSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKL-------RVLDL 324 (653)
Q Consensus 252 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L-------~~L~L 324 (653)
++|++++ +|. .+++|++|+|++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|++
T Consensus 148 s~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~L 214 (571)
T 3cvr_A 148 DNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRC 214 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC--CC----------CCEEEEC
T ss_pred CCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEec
Confidence 5555553 332 34455555555555553 443 33 55555555555555 3442 222 34 66666
Q ss_pred cCCcccccCCccCcCCCCCCeEEccCccccccCchhhcC
Q 041562 325 GSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVA 363 (653)
Q Consensus 325 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 363 (653)
++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..
T Consensus 215 s~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 215 RENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred CCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 666666 45555555666666666666666666555544
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=173.85 Aligned_cols=138 Identities=21% Similarity=0.209 Sum_probs=109.6
Q ss_pred CCcCEEEccCCcCcccch-hhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccc
Q 041562 420 KNLQVLGLAECKLKGQVP-SWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQ 498 (653)
Q Consensus 420 ~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 498 (653)
..+++|++++|++++..+ ..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..++
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------ 105 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE------ 105 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS------
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc------
Confidence 346778888888876544 4577888888888888888877777788888888888888888866666665543
Q ss_pred ccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEe
Q 041562 499 DKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMD 578 (653)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~Ld 578 (653)
.|++|+|++|.+++..|..|..+++|++|+
T Consensus 106 --------------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 135 (220)
T 2v70_A 106 --------------------------------------------------SLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135 (220)
T ss_dssp --------------------------------------------------SCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred --------------------------------------------------CCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence 677888888888888888888888888888
Q ss_pred CCCCeeeeecCcccccCCCCCeeecCCCcccccCC
Q 041562 579 LSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP 613 (653)
Q Consensus 579 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP 613 (653)
|++|++++..|..+..+++|++|++++|++.+..+
T Consensus 136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88888887778888888888888888888887655
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=2.9e-18 Score=165.92 Aligned_cols=163 Identities=23% Similarity=0.279 Sum_probs=98.9
Q ss_pred CCCCCCCCccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccC-CCcCEEEccCCCC
Q 041562 55 NWSSSTDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSS-NYIKIIDLSSNHF 133 (653)
Q Consensus 55 ~W~~~~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~-~~L~~L~Ls~n~l 133 (653)
.|..+...|+|.+|.|...+ + +.+|..+. ++|++|+|++|.+++..|..+.. ++|++|+|++|.+
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~~-----------l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSKR-----------H-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CCCCTTCEEETTEEECTTSC-----------C-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ccCCCCCEEeCCEeEccCCC-----------c-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 34457888999999996321 2 24444333 78888888888888776766655 6677777777776
Q ss_pred CCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCcc
Q 041562 134 QGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLP 213 (653)
Q Consensus 134 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 213 (653)
+ .+|...+..+++|++|+|++|.+++. .+..+..+++|++|++++|.++ .+|
T Consensus 77 ~-~i~~~~~~~l~~L~~L~Ls~N~l~~l--------------------------~~~~~~~l~~L~~L~Ls~N~l~-~lp 128 (229)
T 3e6j_A 77 G-ALPVGVFDSLTQLTVLDLGTNQLTVL--------------------------PSAVFDRLVHLKELFMCCNKLT-ELP 128 (229)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCC--------------------------CTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred C-CcChhhcccCCCcCEEECCCCcCCcc--------------------------ChhHhCcchhhCeEeccCCccc-ccC
Confidence 5 55555555555555555555555443 3334445555555555555555 455
Q ss_pred ccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcc
Q 041562 214 DDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGL 259 (653)
Q Consensus 214 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 259 (653)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+...
T Consensus 129 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 129 RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 5555556666666666666544445555666666666666665543
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=5.9e-18 Score=162.64 Aligned_cols=117 Identities=21% Similarity=0.235 Sum_probs=62.2
Q ss_pred CCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCe
Q 041562 193 GSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLES 272 (653)
Q Consensus 193 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 272 (653)
..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|++++|++++..|..|..+++|++
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 33444444444444444333334444555555555555555444444555555555555555555555555555556666
Q ss_pred EEeecCcCcccCCccccCCCCCcEEEccCCcCccccC
Q 041562 273 LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDIS 309 (653)
Q Consensus 273 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~ 309 (653)
|+|++|++++..|..+..+++|++|++++|.+.++.+
T Consensus 134 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 134 LSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp EECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred EECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 6666666655555556666666666666666554433
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1e-17 Score=168.33 Aligned_cols=169 Identities=25% Similarity=0.312 Sum_probs=86.4
Q ss_pred CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE 250 (653)
Q Consensus 171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 250 (653)
+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ + ..+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEE
Confidence 44555555555555432 2 24555555555555555553322 5555555666665555553 2 2255555555555
Q ss_pred cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562 251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330 (653)
Q Consensus 251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 330 (653)
+++|++++. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV--PLAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-ch--hhcCCCccCEEECCCCcCC
Confidence 555555543 2455555555555555555533 345555555555555555542 22 1445555555555555554
Q ss_pred ccCCccCcCCCCCCeEEccCcccc
Q 041562 331 GSLPITLNSCKSLTAVNLARNQLE 354 (653)
Q Consensus 331 ~~~~~~l~~l~~L~~L~L~~n~l~ 354 (653)
+ ++ .+..+++|+.|++++|.+.
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred C-Ch-hhccCCCCCEEECcCCccc
Confidence 3 22 2444455555555555444
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=5.7e-18 Score=170.22 Aligned_cols=170 Identities=27% Similarity=0.355 Sum_probs=115.9
Q ss_pred CCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCE
Q 041562 145 TQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQ 224 (653)
Q Consensus 145 l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 224 (653)
+++|++|++++|.+..... ...+++|++|++++|.+++..+ +..+++|++|++++|.+++ +| .+..+++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~----~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred cCcccEEEccCCCcccChh----HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 5556666666666655422 2246667777777776665433 6677777777777777664 33 3677777777
Q ss_pred EeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcC
Q 041562 225 LSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFF 304 (653)
Q Consensus 225 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 304 (653)
|++++|.+.+. ..+..+++|++|++++|++++. ..++.+++|++|++++|++++..+ +..+++|++|++++|.+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 77777777643 4567777777777777777754 467777788888888887775433 77777888888888877
Q ss_pred ccccChhhccCCCCcCEEEccCCcccc
Q 041562 305 EGDISVFNFSTLLKLRVLDLGSNLFTG 331 (653)
Q Consensus 305 ~~~i~~~~~~~l~~L~~L~L~~n~l~~ 331 (653)
+ .++ .+..+++|+.|++++|.++.
T Consensus 191 ~-~l~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 191 S-DLR--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp C-BCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred C-CCh--hhccCCCCCEEECcCCcccC
Confidence 6 344 46777888888888887764
No 106
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=1.3e-19 Score=204.84 Aligned_cols=214 Identities=22% Similarity=0.210 Sum_probs=74.7
Q ss_pred CCHHhHHHHHHhhhcCCCC----CCCCCC-CCCCccccceEeCCCCCEEEEEcCCCCcceeccccccCCCCCCEEECCCC
Q 041562 34 CNQIDQDSLLSLGFNISSP----GLNWSS-STDCCLWEGIKCDANGRVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHN 108 (653)
Q Consensus 34 ~~~~~~~~ll~~k~~~~~~----~~~W~~-~~~~c~w~gv~c~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n 108 (653)
....++++++++....... ...|.. .+..+.|.++.+. .++++.++|.++++... +.. .|+.++|+.|
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~ 201 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS-TPLTPKIELFANGKDEA-NQA-----LLQHKKLSQY 201 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec-CCccceEEeeCCCCCcc-hhh-----HhhcCccCcc
Confidence 3456788999988665322 145643 4456789999886 47899999999888763 333 3444555555
Q ss_pred CCCC---------CCCccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEE
Q 041562 109 RLSG---------EFPSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLD 178 (653)
Q Consensus 109 ~~~~---------~~p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~ 178 (653)
.+.+ ..+..+.. +.|++|+|++|.+. .+|..++ .+++|++|+|++|.++ .+|..+. .+++|++|+
T Consensus 202 ~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~--~l~~L~~L~ 276 (727)
T 4b8c_D 202 SIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIK--NLSNLRVLD 276 (727)
T ss_dssp --------------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGG--GGTTCCEEE
T ss_pred cccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhh--CCCCCCEEe
Confidence 5442 12233332 55555555555555 4554444 2455555555555554 3333322 345555555
Q ss_pred ccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCC-CcEEEcccCcCC
Q 041562 179 LSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTS-LRILELYSNSLT 257 (653)
Q Consensus 179 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~-L~~L~L~~n~l~ 257 (653)
|++|.++ .+|..|+.+++|++|+|++|.++ .+|..|+.+++|++|+|++|.+.+.+|..+..+.. +..+++++|.++
T Consensus 277 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 277 LSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp CTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCccc
Confidence 5555554 44444555555555555555444 44444555555555555555554444444432211 112344444444
Q ss_pred cccC
Q 041562 258 GLIP 261 (653)
Q Consensus 258 ~~~p 261 (653)
+.+|
T Consensus 355 ~~~p 358 (727)
T 4b8c_D 355 IPLP 358 (727)
T ss_dssp CCCC
T ss_pred CcCc
Confidence 4444
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2.2e-17 Score=158.62 Aligned_cols=133 Identities=20% Similarity=0.271 Sum_probs=69.1
Q ss_pred CCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEc
Q 041562 245 SLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDL 324 (653)
Q Consensus 245 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L 324 (653)
+|++|++++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|++++|.++ .++...|..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEEC
Confidence 4444444444444443334444555555555555554444444555555555555555554 333334455555555555
Q ss_pred cCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCC
Q 041562 325 GSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLT 378 (653)
Q Consensus 325 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 378 (653)
++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|++++|.+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555555544555555555555555555555544445555555666666665554
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=2.8e-17 Score=157.85 Aligned_cols=107 Identities=27% Similarity=0.304 Sum_probs=39.2
Q ss_pred CCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeec
Q 041562 198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHN 277 (653)
Q Consensus 198 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 277 (653)
|+.|++++|.+++..+..|..+++|++|+|++|.+.+..|..|.++++|++|++++|+++...+..|..+++|++|+|++
T Consensus 34 l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 113 (220)
T 2v9t_B 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113 (220)
T ss_dssp CCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence 33333333333332222333333333333333333333333333333333333333333332222233333333333333
Q ss_pred CcCcccCCccccCCCCCcEEEccCCcC
Q 041562 278 NSLSGSLPSSLKNCINLTLLNLQSNFF 304 (653)
Q Consensus 278 n~l~~~~p~~l~~l~~L~~L~L~~n~l 304 (653)
|++++..|..|..+++|++|++++|.+
T Consensus 114 N~l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 114 NKINCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence 333333333333333333333333333
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=7.5e-18 Score=185.61 Aligned_cols=190 Identities=22% Similarity=0.302 Sum_probs=136.7
Q ss_pred CCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEE
Q 041562 99 HLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLD 178 (653)
Q Consensus 99 ~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~ 178 (653)
.+..++++.+.+.+..+ .-..++|+.|++++|.+. .+|. +..+++|++|+|++|.+++..+ ...+++|++|+
T Consensus 22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~ 93 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEE
T ss_pred HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh----hccCCCCCEEE
Confidence 34555666666664433 112277888888888887 5553 4568888888888888887665 23678888888
Q ss_pred ccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCc
Q 041562 179 LSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTG 258 (653)
Q Consensus 179 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 258 (653)
|++|.+++ + ..+..+++|+.|++++|.+.+ + ..+..+++|+.|+|++|.+.+. ..+..+++|++|+|++|++.+
T Consensus 94 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 88888874 2 367788888888888888775 3 3577778888888888887754 567778888888888888876
Q ss_pred ccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCcc
Q 041562 259 LIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEG 306 (653)
Q Consensus 259 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 306 (653)
..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 655 77778888888888877753 357777888888888887764
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=173.68 Aligned_cols=152 Identities=29% Similarity=0.275 Sum_probs=71.1
Q ss_pred CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCcccccc-CCCCCCEEeccCCcCcccccccccCCCCCcEEEccc
Q 041562 175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIY-TATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS 253 (653)
Q Consensus 175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 253 (653)
++++++++.++ .+|..+. +.++.|++++|.+++..+..+. .+++|++|+|++|.|.+..+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 34455554444 2333222 2344455555555443333343 455555555555555544444455555555555555
Q ss_pred CcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhc---cCCCCcCEEEccCCccc
Q 041562 254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNF---STLLKLRVLDLGSNLFT 330 (653)
Q Consensus 254 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~---~~l~~L~~L~L~~n~l~ 330 (653)
|++++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|.++ .++...+ ..+++|+.|+|++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 5555444444555555555555555555444445555555555555555554 2332222 23444444444444444
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.9e-17 Score=172.00 Aligned_cols=156 Identities=22% Similarity=0.225 Sum_probs=91.8
Q ss_pred CCEEEccCCcCccCCCccCC-CCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcc
Q 041562 174 IRHLDLSNNRFTGPVPLGLG-SCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELY 252 (653)
Q Consensus 174 L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 252 (653)
+++|+|++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|+|++|.+.+..+..|..+++|++|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44555555555544444444 55666666666666655444556666666666666666665555556666666666666
Q ss_pred cCcCCcccCccccCCCCCCeEEeecCcCcccCCccc---cCCCCCcEEEccCCcCccccChhhccCCCC--cCEEEccCC
Q 041562 253 SNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSL---KNCINLTLLNLQSNFFEGDISVFNFSTLLK--LRVLDLGSN 327 (653)
Q Consensus 253 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~--L~~L~L~~n 327 (653)
+|++++..|..|..+++|++|+|++|++++..+..+ ..+++|+.|++++|.++ .++...+..++. ++.|++++|
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCC
Confidence 666666556666666666666666666664322223 45677777777777776 455445555554 355666666
Q ss_pred ccc
Q 041562 328 LFT 330 (653)
Q Consensus 328 ~l~ 330 (653)
.+.
T Consensus 200 ~~~ 202 (361)
T 2xot_A 200 PLE 202 (361)
T ss_dssp CEE
T ss_pred Ccc
Confidence 554
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=3.1e-18 Score=160.89 Aligned_cols=132 Identities=22% Similarity=0.307 Sum_probs=72.3
Q ss_pred CEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCch-hhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccc
Q 041562 423 QVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPR-FLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKN 501 (653)
Q Consensus 423 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~ 501 (653)
+.+++++++++ .+|..+.. +|++|++++|++.+..+. .+..+++|++|+|++|++++..|..|..++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--------- 78 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--------- 78 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT---------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcc---------
Confidence 44555555554 34443322 555566666655544432 355556666666666665555554444332
Q ss_pred cccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCC
Q 041562 502 KANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSK 581 (653)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~ 581 (653)
.|++|+|++|++++..|..|+.+++|++|||++
T Consensus 79 -----------------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 79 -----------------------------------------------HIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp -----------------------------------------------TCCEEECCSCCCCEECSSSSTTCTTCCEEECCS
T ss_pred -----------------------------------------------cCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 455556666666555555555566666666666
Q ss_pred CeeeeecCcccccCCCCCeeecCCCcccccCC
Q 041562 582 NHLSGEIPVSLKRLHFLSAFNVAENNLRGSIP 613 (653)
Q Consensus 582 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP 613 (653)
|++++.+|..+..+++|++|++++|++.+..|
T Consensus 112 N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 112 NQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 66665555555556666666666666555444
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=2.1e-17 Score=182.00 Aligned_cols=190 Identities=24% Similarity=0.302 Sum_probs=110.4
Q ss_pred CcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEE
Q 041562 122 YIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTF 201 (653)
Q Consensus 122 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 201 (653)
.+..++++.+.+.+.++. ..+++|+.|++++|.+..... ...+++|++|+|++|.+++..+ +..+++|+.|
T Consensus 22 ~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l~~----l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCCTT----GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCChH----HccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 344455555655533332 235666666776666655432 2246666666666666665433 6666666666
Q ss_pred EcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCc
Q 041562 202 RAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLS 281 (653)
Q Consensus 202 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 281 (653)
+|++|.+.+ +| .+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+.
T Consensus 93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence 666666653 22 456666666666666666542 3456666666666666666644 35566666666666666666
Q ss_pred ccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccc
Q 041562 282 GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTG 331 (653)
Q Consensus 282 ~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~ 331 (653)
+..| +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|.+.+
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~-l~--~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISD-LR--ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCB-CG--GGTTCTTCSEEECCSEEEEC
T ss_pred Cchh--hccCCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEccCCcCcC
Confidence 4433 5566666666666666653 33 35556666666666666553
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=1e-16 Score=155.07 Aligned_cols=151 Identities=26% Similarity=0.289 Sum_probs=67.8
Q ss_pred CCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEccc
Q 041562 174 IRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYS 253 (653)
Q Consensus 174 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 253 (653)
-+.++++++.++ .+|..+. ++|++|++++|.+++..|..+..+++|++|+|++|.+....+..+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 445555555544 3333222 4445555555555444444444445555555555544433333344444455555554
Q ss_pred CcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562 254 NSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF 329 (653)
Q Consensus 254 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 329 (653)
|++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCB
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCc
Confidence 4444443333444444444444444444 34444444444444444444444 22222333344444444444433
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2.6e-17 Score=155.36 Aligned_cols=150 Identities=21% Similarity=0.228 Sum_probs=66.4
Q ss_pred CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE 250 (653)
Q Consensus 171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 250 (653)
+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 445555555555554 223 3444555555555555333 112344444455555555444444444444444444444
Q ss_pred cccCcCCcccCccccCCCCCCeEEeecCc-CcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcc
Q 041562 251 LYSNSLTGLIPRDIGKLTNLESLVLHNNS-LSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLF 329 (653)
Q Consensus 251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 329 (653)
+++|++++..|..++.+++|++|++++|. ++ .+| .+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEeeCccc
Confidence 44444444344444444444444444444 32 222 34444444444444444432 22 233344444444444443
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.9e-17 Score=154.13 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=79.9
Q ss_pred CCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCe
Q 041562 193 GSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLES 272 (653)
Q Consensus 193 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 272 (653)
+.+++|++|++++|.++ .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|++++..+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44556666666666665 344 45556666666666664432 234555555666666655555544555555555555
Q ss_pred EEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcc
Q 041562 273 LVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQ 352 (653)
Q Consensus 273 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 352 (653)
|++++|.+++..|..+..+++|++|++++|...+.++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 5555555555445555555555555555554222333 34455555555555555543 22 34444444444444444
Q ss_pred c
Q 041562 353 L 353 (653)
Q Consensus 353 l 353 (653)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 4
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=4.9e-20 Score=201.85 Aligned_cols=104 Identities=28% Similarity=0.397 Sum_probs=51.9
Q ss_pred CCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeec
Q 041562 198 LKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHN 277 (653)
Q Consensus 198 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 277 (653)
|+.|++++|.+++ +|. +..+++|++|+|++|.++ .+|..++.+++|++|++++|++++ +| .++.+++|++|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4445555555443 343 445555555555555554 444455555555555555555553 33 445555555555555
Q ss_pred CcCcccC-CccccCCCCCcEEEccCCcCcc
Q 041562 278 NSLSGSL-PSSLKNCINLTLLNLQSNFFEG 306 (653)
Q Consensus 278 n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~ 306 (653)
|++++.. |..++.+++|+.|++++|.+++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 5555443 4455555555555555555543
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=2.7e-19 Score=195.99 Aligned_cols=63 Identities=22% Similarity=0.249 Sum_probs=31.8
Q ss_pred ccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeec-CcccccCCCCCeeecCCCcccccCC
Q 041562 549 LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEI-PVSLKRLHFLSAFNVAENNLRGSIP 613 (653)
Q Consensus 549 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~ls~N~l~g~iP 613 (653)
.|+.|+|++|.+++ +| .++.+++|++|+|++|++++.+ |..+..+++|++|++++|++++.+|
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 34455555555553 34 4555555555555555555443 5555555555555555555554443
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=4.3e-17 Score=161.18 Aligned_cols=168 Identities=29% Similarity=0.336 Sum_probs=86.9
Q ss_pred CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE 250 (653)
Q Consensus 171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 250 (653)
+.+++.++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344556666666665322 3555666666666666665 333 45556666666666666654332 55556666666
Q ss_pred cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562 251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330 (653)
Q Consensus 251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 330 (653)
+++|++++. |. +.. ++|++|++++|++++. ..+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.++
T Consensus 92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCCC
T ss_pred CCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcCc
Confidence 666655542 22 222 5555555555555532 235555555555555555542 22 3444555555555555554
Q ss_pred ccCCccCcCCCCCCeEEccCcccc
Q 041562 331 GSLPITLNSCKSLTAVNLARNQLE 354 (653)
Q Consensus 331 ~~~~~~l~~l~~L~~L~L~~n~l~ 354 (653)
+. ..+..+++|+.|++++|.+.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ch--HHhccCCCCCEEeCCCCccc
Confidence 33 33444444444444444444
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.8e-16 Score=148.76 Aligned_cols=163 Identities=22% Similarity=0.283 Sum_probs=121.4
Q ss_pred CCcCEEEccCCcCcccchh-hhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccc
Q 041562 420 KNLQVLGLAECKLKGQVPS-WIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQ 498 (653)
Q Consensus 420 ~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~ 498 (653)
.++++|++++|++++..+. .+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------ 102 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH------ 102 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCT------
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCC------
Confidence 3788999999999866554 488999999999999999988899999999999999999999987776665544
Q ss_pred ccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEe
Q 041562 499 DKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMD 578 (653)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~Ld 578 (653)
+|++|+|++|++++.+|..|..+++|++|+
T Consensus 103 --------------------------------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 103 --------------------------------------------------QLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp --------------------------------------------------TCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred --------------------------------------------------CCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 688999999999999999999999999999
Q ss_pred CCCCeeeeecCcccccCCCCCeeecCCCcccccCCCCCCCCCcCCCccCCCCCCCCCCCCCCC
Q 041562 579 LSKNHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPSGGQFDTFPSSSFRGNPDLCGAIVQRSC 641 (653)
Q Consensus 579 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lc~~~~~~~c 641 (653)
|++|.+++..+... -...++...+..+......|.. +....-..+..+..-|..+-...|
T Consensus 133 L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~~~~~c 192 (192)
T 1w8a_A 133 LASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSENSEGC 192 (192)
T ss_dssp CTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC---CC
T ss_pred eCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcCCCCCCCC
Confidence 99999998665211 0112333344455555555542 333334455666667765543444
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.1e-16 Score=158.08 Aligned_cols=168 Identities=24% Similarity=0.324 Sum_probs=96.8
Q ss_pred CCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEE
Q 041562 146 QNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQL 225 (653)
Q Consensus 146 ~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 225 (653)
.+++.+++++|.+++.... ..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|
T Consensus 19 ~~l~~l~l~~~~i~~~~~~----~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQ----KELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHTCSCTTSEECH----HHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHhcCCCcccccch----hhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3455555666666554421 135566666666666653 33 45666666666666666664332 6666666666
Q ss_pred eccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCc
Q 041562 226 SLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFE 305 (653)
Q Consensus 226 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 305 (653)
++++|.+++ ++. +.. ++|++|++++|++++. ..++.+++|++|++++|++++. + .+..+++|++|++++|.++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 666666653 222 222 6666666666666643 2466666666666666666643 2 4566666666666666665
Q ss_pred cccChhhccCCCCcCEEEccCCcccc
Q 041562 306 GDISVFNFSTLLKLRVLDLGSNLFTG 331 (653)
Q Consensus 306 ~~i~~~~~~~l~~L~~L~L~~n~l~~ 331 (653)
+. ..+..+++|+.|++++|.+.+
T Consensus 164 ~~---~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 NT---GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BC---TTSTTCCCCCEEEEEEEEEEC
T ss_pred ch---HHhccCCCCCEEeCCCCcccC
Confidence 33 245566666666666666653
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=2.2e-17 Score=186.59 Aligned_cols=222 Identities=21% Similarity=0.223 Sum_probs=96.0
Q ss_pred CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCE
Q 041562 121 NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKT 200 (653)
Q Consensus 121 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 200 (653)
+.++.|+|.+|.+. .++.. .|+.++|+.|.+.+ ++++.|.+. ..+..+..++.|+.
T Consensus 173 ~~~~~l~L~~n~~~-~~~~~------~l~~l~Ls~~~i~~----------------~~~~~n~~~-~~~~~~~~l~~L~~ 228 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQA------LLQHKKLSQYSIDE----------------DDDIENRMV-MPKDSKYDDQLWHA 228 (727)
T ss_dssp -------------------------------------------------------------------------CCCCCCE
T ss_pred CccceEEeeCCCCC-cchhh------HhhcCccCcccccC----------------cccccccee-cChhhhccCCCCcE
Confidence 56777888877776 33432 24445555554332 233344443 44566677777777
Q ss_pred EEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcC
Q 041562 201 FRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSL 280 (653)
Q Consensus 201 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 280 (653)
|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|+++ .+|..|+.+++|++|+|++|.+
T Consensus 229 L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l 305 (727)
T 4b8c_D 229 LDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV 305 (727)
T ss_dssp EECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC
T ss_pred EECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC
Confidence 777777776 56666667777777777777777 66777777777777777777777 5577777777777777777777
Q ss_pred cccCCccccCCCCCcEEEccCCcCccccChhhccCC-CCcCEEEccCCcccccCCccCcCCCCCCeEEccCc--------
Q 041562 281 SGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTL-LKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARN-------- 351 (653)
Q Consensus 281 ~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-------- 351 (653)
+ .+|..|+.+++|++|+|++|.+++.+|. .+..+ ..+..+++++|.+++.+|.. |+.|+++.|
T Consensus 306 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~ 377 (727)
T 4b8c_D 306 T-TLPWEFGNLCNLQFLGVEGNPLEKQFLK-ILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYD 377 (727)
T ss_dssp C-CCCSSTTSCTTCCCEECTTSCCCSHHHH-HHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------
T ss_pred C-ccChhhhcCCCccEEeCCCCccCCCChH-HHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccC
Confidence 6 6666677777777777777777765553 23221 11223567777777666643 344455544
Q ss_pred cccccCchhhcCCCCCCEEECCCCCC
Q 041562 352 QLEGQISPGIVALKSLSFLSLSNNSL 377 (653)
Q Consensus 352 ~l~~~~~~~l~~l~~L~~L~Ls~n~l 377 (653)
.+.+..+..+..+..+....+++|.+
T Consensus 378 ~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 378 SLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp ------------------------CC
T ss_pred Cccccccchhhcccccceeeeecccc
Confidence 22222222333444444455555544
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=2.3e-16 Score=144.70 Aligned_cols=137 Identities=21% Similarity=0.246 Sum_probs=111.7
Q ss_pred CCCcCEEEccCCcCc-ccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcc
Q 041562 419 FKNLQVLGLAECKLK-GQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPE 497 (653)
Q Consensus 419 ~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 497 (653)
.++|++|++++|.++ +.+|..+..+++|++|++++|++.+. ..+..+++|++|++++|++++.+|..+..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------ 94 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKL------ 94 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHC------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhC------
Confidence 467899999999987 67888888899999999999998865 678889999999999999886555444333
Q ss_pred cccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCcccc-ccccccCCCCCe
Q 041562 498 QDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNI-PDQISQLTNLER 576 (653)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~ 576 (653)
+ .|++|+|++|.+++.. +..+..+++|++
T Consensus 95 -------------------------------------------------~-~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~ 124 (168)
T 2ell_A 95 -------------------------------------------------P-NLTHLNLSGNKLKDISTLEPLKKLECLKS 124 (168)
T ss_dssp -------------------------------------------------T-TCCEEECBSSSCCSSGGGGGGSSCSCCCE
T ss_pred -------------------------------------------------C-CCCEEeccCCccCcchhHHHHhcCCCCCE
Confidence 3 7889999999998643 378899999999
Q ss_pred EeCCCCeeeeecC---cccccCCCCCeeecCCCcccccCCC
Q 041562 577 MDLSKNHLSGEIP---VSLKRLHFLSAFNVAENNLRGSIPS 614 (653)
Q Consensus 577 LdLs~N~l~~~ip---~~l~~l~~L~~L~ls~N~l~g~iP~ 614 (653)
|++++|++++..+ ..+..+++|++|++++|.+. .+|.
T Consensus 125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 9999999985544 47888999999999999886 5554
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.7e-16 Score=162.63 Aligned_cols=291 Identities=13% Similarity=0.071 Sum_probs=152.0
Q ss_pred CCCCCEEeccCCcCcccccccccC-CCCCcEEEcccCcCC--cccCccccCCCCCCeEEeecCcCcccCCccccC-----
Q 041562 219 ATSLEQLSLSFNHISGSIKNGIVN-LTSLRILELYSNSLT--GLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKN----- 290 (653)
Q Consensus 219 l~~L~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~----- 290 (653)
+.+++.|.++++- .......+.. +++|++|||++|++. ...+ +.++.++.+.+..+.+. +..|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccccC---HHHhccccccc
Confidence 4567777776541 1111122333 566777777776665 1111 11222344444444222 223444
Q ss_pred ---CCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCC
Q 041562 291 ---CINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSL 367 (653)
Q Consensus 291 ---l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 367 (653)
+++|+.|++.+ .++ .|+...|.++++|+.+++++|.+....+..|.++.++..+.+..+....
T Consensus 97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~------------ 162 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYR------------ 162 (329)
T ss_dssp EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHH------------
T ss_pred ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhh------------
Confidence 66666666665 444 4554556666666666666665554445555554444444433321100
Q ss_pred CEEECCCCCCCCCCcchhhccCCCCCc-EEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCcccchhhhcCCccC
Q 041562 368 SFLSLSNNSLTNITGAIRILMGCKNLK-VLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKL 446 (653)
Q Consensus 368 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L 446 (653)
....+.. ..+.+|..|+ .+.+.... .++.... ...-...+++.+.+.++-...........+++|
T Consensus 163 --------~~~~i~~--~~f~~~~~L~~~i~~~~~~---~l~~~~~-~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L 228 (329)
T 3sb4_A 163 --------FKNRWEH--FAFIEGEPLETTIQVGAMG---KLEDEIM-KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNL 228 (329)
T ss_dssp --------TSTTTTT--SCEEESCCCEEEEEECTTC---CHHHHHH-HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTC
T ss_pred --------ccccccc--cccccccccceeEEecCCC---cHHHHHh-hcccCccccceEEEeeeecHHHHHHHHHhcCCC
Confidence 0000000 1122333333 22221110 0000000 000123455666666553322222222337888
Q ss_pred CeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccccccccccccccccCCcccccccccc
Q 041562 447 QVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKI 526 (653)
Q Consensus 447 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (653)
+.++|++|+++...+..|.++++|+.+++.+| ++...+.+|.+++
T Consensus 229 ~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~---------------------------------- 273 (329)
T 3sb4_A 229 VSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG---------------------------------- 273 (329)
T ss_dssp CEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT----------------------------------
T ss_pred eEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh----------------------------------
Confidence 88888888888666677888888888888887 6655556666655
Q ss_pred cccccccceeeeCChHHHhHHhccC-eeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeee
Q 041562 527 LTFHEQYTWKTTASAAVSLLRLLLH-MLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFN 602 (653)
Q Consensus 527 ~~~~~~~~l~g~ip~~l~~l~~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ 602 (653)
.|+ .+++.+ .++...+.+|.++++|+.+++++|+++..-+..|.++++|+.++
T Consensus 274 ----------------------~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 274 ----------------------RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ----------------------TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ----------------------hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 456 667766 56655667788888888888888888766666777788887775
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=4.7e-16 Score=159.34 Aligned_cols=218 Identities=12% Similarity=0.145 Sum_probs=106.8
Q ss_pred CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCc----CcccccccccCCCCC
Q 041562 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH----ISGSIKNGIVNLTSL 246 (653)
Q Consensus 171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~----i~~~~~~~l~~l~~L 246 (653)
+++|++|++.+ .++......|.+|++|+.+++..|.+....+..|..+.++..+....+. .......+|.++..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 55666666655 5554445556666666666666666554444555555555555544321 111122334455555
Q ss_pred c-EEEcccCcCCcccCccc----cCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCE
Q 041562 247 R-ILELYSNSLTGLIPRDI----GKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRV 321 (653)
Q Consensus 247 ~-~L~L~~n~l~~~~p~~l----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~ 321 (653)
+ .+.+.... .++..+ ....+++.+.+.++-...........+++|+.+++++|.++ .++...|.++.+|+.
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLK 254 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCE
T ss_pred ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCE
Confidence 5 33333211 111111 11234444444443211110000112555666666665555 455555666666666
Q ss_pred EEccCCcccccCCccCcCCCCCC-eEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEE
Q 041562 322 LDLGSNLFTGSLPITLNSCKSLT-AVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLI 397 (653)
Q Consensus 322 L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~ 397 (653)
+++.+| ++...+.+|.+|++|+ .+++.+ .++...+..|..+++|+.+++++|+++.++. ..|.+|++|+.++
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~--~aF~~~~~L~~ly 327 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD--ELFGNGVPSKLIY 327 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT--TTTCTTCCCCEEE
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch--hhhcCCcchhhhc
Confidence 666555 4444445556666666 666655 4444445556666666666666666555443 3455666666554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=4.5e-16 Score=139.62 Aligned_cols=129 Identities=20% Similarity=0.229 Sum_probs=100.8
Q ss_pred CCCcCEEEccCCcCc-ccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcc
Q 041562 419 FKNLQVLGLAECKLK-GQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPE 497 (653)
Q Consensus 419 ~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 497 (653)
.++|++|++++|.++ +.+|..+..+++|++|++++|++.+. ..+..+++|++|++++|++++.+|..+..+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l------ 87 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKC------ 87 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHC------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhC------
Confidence 467888888888887 67777778888888888888888865 667888888888888888876555443332
Q ss_pred cccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccc-cccccccCCCCCe
Q 041562 498 QDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGN-IPDQISQLTNLER 576 (653)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~ 576 (653)
+ .|++|++++|.+++. .|..++.+++|++
T Consensus 88 -------------------------------------------------~-~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 88 -------------------------------------------------P-NLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp -------------------------------------------------T-TCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred -------------------------------------------------C-CCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 2 688888999988864 3477888899999
Q ss_pred EeCCCCeeeeecC---cccccCCCCCeeecCC
Q 041562 577 MDLSKNHLSGEIP---VSLKRLHFLSAFNVAE 605 (653)
Q Consensus 577 LdLs~N~l~~~ip---~~l~~l~~L~~L~ls~ 605 (653)
|++++|++++..+ ..+..+++|++|++++
T Consensus 118 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 118 LDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999998886555 4678888898888864
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=3.7e-15 Score=139.75 Aligned_cols=128 Identities=30% Similarity=0.297 Sum_probs=84.5
Q ss_pred CEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccccc
Q 041562 423 QVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKNK 502 (653)
Q Consensus 423 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~~ 502 (653)
+.++++++.++ .+|..+. ++|++|++++|++. .+|..|..+++|++|++++|++++..+..|..++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~---------- 78 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT---------- 78 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCT----------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCC----------
Confidence 45666666666 4554332 46777777777776 5556677777777777777777655555554443
Q ss_pred ccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCCC
Q 041562 503 ANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKN 582 (653)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N 582 (653)
.|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus 79 ----------------------------------------------~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N 112 (193)
T 2wfh_A 79 ----------------------------------------------QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112 (193)
T ss_dssp ----------------------------------------------TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred ----------------------------------------------CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCC
Confidence 5666777777777666667777777777777777
Q ss_pred eeeeecCcccccCCCCCeeecCCCcccc
Q 041562 583 HLSGEIPVSLKRLHFLSAFNVAENNLRG 610 (653)
Q Consensus 583 ~l~~~ip~~l~~l~~L~~L~ls~N~l~g 610 (653)
++++..+..+..+++|++|++++|++.+
T Consensus 113 ~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 113 DISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCeeChhhhhcCccccEEEeCCCCeec
Confidence 7775444456677777777777777654
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.9e-15 Score=138.49 Aligned_cols=131 Identities=24% Similarity=0.178 Sum_probs=63.4
Q ss_pred CCCCEEEccCCcCc-cCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562 172 CSIRHLDLSNNRFT-GPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE 250 (653)
Q Consensus 172 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 250 (653)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555555 44455555555555555555555533 3444555555555555555544444444455555555
Q ss_pred cccCcCCccc-CccccCCCCCCeEEeecCcCcccCC---ccccCCCCCcEEEccCCcC
Q 041562 251 LYSNSLTGLI-PRDIGKLTNLESLVLHNNSLSGSLP---SSLKNCINLTLLNLQSNFF 304 (653)
Q Consensus 251 L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l 304 (653)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 5555554321 1344444445555555444443222 2344444444444444443
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=3.2e-15 Score=138.29 Aligned_cols=134 Identities=22% Similarity=0.221 Sum_probs=101.5
Q ss_pred cCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcccccc
Q 041562 422 LQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDKN 501 (653)
Q Consensus 422 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~~ 501 (653)
.+.+++++++++ .+|..+ .++|++|++++|++.+..+..+..+++|++|++++|++++..+..|..++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--------- 76 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT--------- 76 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT---------
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC---------
Confidence 466777777777 455433 36788888888888876666778888888888888888755544444433
Q ss_pred cccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCCC
Q 041562 502 KANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLSK 581 (653)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~ 581 (653)
.|++|+|++|.+++..+..+..+++|++|++++
T Consensus 77 -----------------------------------------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 109 (177)
T 2o6r_A 77 -----------------------------------------------KLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109 (177)
T ss_dssp -----------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -----------------------------------------------ccCEEECCCCCccccCHHHhhCCcccCEEECcC
Confidence 677888888888877777788888888888888
Q ss_pred CeeeeecCcccccCCCCCeeecCCCcccccCCC
Q 041562 582 NHLSGEIPVSLKRLHFLSAFNVAENNLRGSIPS 614 (653)
Q Consensus 582 N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 614 (653)
|++++..+..+..+++|++|++++|++.+..|.
T Consensus 110 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 110 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 888865555567788888888888888877663
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.8e-15 Score=135.66 Aligned_cols=128 Identities=25% Similarity=0.215 Sum_probs=77.3
Q ss_pred CCCCCEEEccCCcCc-cCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEE
Q 041562 171 FCSIRHLDLSNNRFT-GPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRIL 249 (653)
Q Consensus 171 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 249 (653)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 345666666666666 55666666666666666666666644 455666666666666666665555555566666666
Q ss_pred EcccCcCCcc-cCccccCCCCCCeEEeecCcCcccCC---ccccCCCCCcEEEcc
Q 041562 250 ELYSNSLTGL-IPRDIGKLTNLESLVLHNNSLSGSLP---SSLKNCINLTLLNLQ 300 (653)
Q Consensus 250 ~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~ 300 (653)
++++|++++. .+..++.+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666666543 22455566666666666666654433 245555555555554
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=2.7e-14 Score=133.82 Aligned_cols=128 Identities=25% Similarity=0.287 Sum_probs=77.7
Q ss_pred CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccC
Q 041562 175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSN 254 (653)
Q Consensus 175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 254 (653)
++++++++.++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666655 3444332 45666666666665 45556666666666666666666555556666666666666666
Q ss_pred cCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCcc
Q 041562 255 SLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEG 306 (653)
Q Consensus 255 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 306 (653)
++++..|..|..+++|++|+|++|.++...+..+..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 6666555566666666666666666664444455666666666666665543
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=2.3e-13 Score=142.36 Aligned_cols=267 Identities=12% Similarity=0.121 Sum_probs=196.8
Q ss_pred CCCCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCC
Q 041562 96 NLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIR 175 (653)
Q Consensus 96 ~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~ 175 (653)
.+..++.+.+.. .++......|...+|+.+++..+ ++ .|+...|..+ +|+.+++.. .++...+..+ ..+++|+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF--~~c~~L~ 183 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIF--YYCYNLK 183 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTT--TTCTTCC
T ss_pred ecCCccEEEECC-ccCEehHhhcccCCccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHh--hCcccCC
Confidence 346777777764 34444555666677888888766 55 6777777764 688888875 4544433333 2688888
Q ss_pred EEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCc
Q 041562 176 HLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNS 255 (653)
Q Consensus 176 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 255 (653)
.+++++|.++......|. +.+|+.+.+..+ ++..-..+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 898888888755555555 688888888754 55455567888889999998875 55455566766 789999984 55
Q ss_pred CCcccCccccCCCCCCeEEeecCcCc-----ccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562 256 LTGLIPRDIGKLTNLESLVLHNNSLS-----GSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330 (653)
Q Consensus 256 l~~~~p~~l~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 330 (653)
++......|.++++|+.+++.++.+. ...+..|.+|++|+.+++.. .++ .++...|.++.+|+.+++..+ ++
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CC
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-cc
Confidence 66566678889999999999887764 35566788999999999984 465 677778999999999999655 66
Q ss_pred ccCCccCcCCCCCCeEEccCccccccCchhhcCCC-CCCEEECCCCCCC
Q 041562 331 GSLPITLNSCKSLTAVNLARNQLEGQISPGIVALK-SLSFLSLSNNSLT 378 (653)
Q Consensus 331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~ 378 (653)
.....+|.++ +|+.+++.+|.+.......|..++ .++.|++..+.+.
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 5667788999 999999999988766666677774 7888988876544
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=5.9e-14 Score=129.75 Aligned_cols=130 Identities=27% Similarity=0.263 Sum_probs=63.8
Q ss_pred CEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccC
Q 041562 175 RHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSN 254 (653)
Q Consensus 175 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n 254 (653)
+.+++++++++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 44555555444 222222 134555555555554333334445555555555555555443344455555555555555
Q ss_pred cCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccc
Q 041562 255 SLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGD 307 (653)
Q Consensus 255 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 307 (653)
++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 55544444445555555555555555543333344555555555555555443
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=4.5e-13 Score=140.23 Aligned_cols=265 Identities=12% Similarity=0.193 Sum_probs=206.9
Q ss_pred CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCE
Q 041562 121 NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKT 200 (653)
Q Consensus 121 ~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 200 (653)
..++.+.+.+ .++ .|+...|..+ +|+.+++..+ ++......+. + ++|+.+.+.. .++......|.+|++|+.
T Consensus 113 ~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~--~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 113 KGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFF--N-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp SSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTT--T-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred CCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcC--C-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 6777888765 355 7778888775 7999999877 5544433332 3 5799999986 666667788999999999
Q ss_pred EEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcC
Q 041562 201 FRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSL 280 (653)
Q Consensus 201 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 280 (653)
+++..|.++ .++.....+++|+.+.+..+ +......+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 999999998 45554445799999999855 66566788999999999999875 55555567777 799999995 456
Q ss_pred cccCCccccCCCCCcEEEccCCcCc----cccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCcccccc
Q 041562 281 SGSLPSSLKNCINLTLLNLQSNFFE----GDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQ 356 (653)
Q Consensus 281 ~~~~p~~l~~l~~L~~L~L~~n~l~----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 356 (653)
+......|.+|++|+.+++.+|.+. ..++...|..+++|+.+++.+ .++......|.+|++|+.+.+..+ ++..
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 6566788999999999999988764 136667899999999999994 577667788999999999999665 6656
Q ss_pred CchhhcCCCCCCEEECCCCCCCCCCcchhhccCCC-CCcEEECCCCCC
Q 041562 357 ISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCK-NLKVLIIPLNFM 403 (653)
Q Consensus 357 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~-~L~~L~l~~n~~ 403 (653)
....|..+ +|+.+++.+|.+..+.. ..+.+++ .++.+.+..+.+
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~~~l~~--~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTPPQVFE--KVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSCCBCCC--SSCCCSCTTCCEEEECGGGH
T ss_pred cHHhCCCC-CCCEEEEcCCCCccccc--ccccCCCCCccEEEeCHHHH
Confidence 67788888 99999999998877654 3456664 788888876643
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=1.9e-14 Score=132.95 Aligned_cols=132 Identities=16% Similarity=0.136 Sum_probs=99.1
Q ss_pred CCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCcc
Q 041562 418 GFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPE 497 (653)
Q Consensus 418 ~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l 497 (653)
.+.+|++|++++|+++ .+|......++|++|++++|++++. ..+..+++|++|++++|++++..+..+..+
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l------ 87 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL------ 87 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC------
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC------
Confidence 4567888888888887 3454333344888888888888864 567888888889988888874433322322
Q ss_pred cccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCcccccc--ccccCCCCC
Q 041562 498 QDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPD--QISQLTNLE 575 (653)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~ 575 (653)
+ .|++|+|++|.++ .+|. .+..+++|+
T Consensus 88 -------------------------------------------------~-~L~~L~L~~N~i~-~~~~~~~l~~l~~L~ 116 (176)
T 1a9n_A 88 -------------------------------------------------P-DLTELILTNNSLV-ELGDLDPLASLKSLT 116 (176)
T ss_dssp -------------------------------------------------T-TCCEEECCSCCCC-CGGGGGGGGGCTTCC
T ss_pred -------------------------------------------------C-CCCEEECCCCcCC-cchhhHhhhcCCCCC
Confidence 2 6888999999886 4565 788899999
Q ss_pred eEeCCCCeeeeecCcc----cccCCCCCeeecCCCcccc
Q 041562 576 RMDLSKNHLSGEIPVS----LKRLHFLSAFNVAENNLRG 610 (653)
Q Consensus 576 ~LdLs~N~l~~~ip~~----l~~l~~L~~L~ls~N~l~g 610 (653)
.|++++|.++ .+|.. +..++.|++||+++|....
T Consensus 117 ~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 117 YLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 9999999998 56664 7888999999999998764
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=9.3e-14 Score=128.25 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=15.3
Q ss_pred ccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcC
Q 041562 240 IVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSL 280 (653)
Q Consensus 240 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 280 (653)
+..+++|++|++++|++++..+..++.+++|++|++++|.+
T Consensus 60 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence 33333444444444443322222223334444444444433
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.44 E-value=6.8e-12 Score=131.66 Aligned_cols=63 Identities=8% Similarity=0.205 Sum_probs=28.3
Q ss_pred CCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEE
Q 041562 136 KIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFR 202 (653)
Q Consensus 136 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 202 (653)
.|....|..+.+|+.+.+..+ ++...... +.++++|+.+++..+ ++......|.++.+|+.+.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i~~I~~~a--F~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~ 123 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-VREIGEFA--FENCSKLEIINIPDS-VKMIGRCTFSGCYALKSIL 123 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-CCEECTTT--TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCC
T ss_pred EhHHHHhhCCCCceEEEeCCC-ccCcchhH--hhCCCCCcEEEeCCC-ceEccchhhcccccchhhc
Confidence 455555666666666666532 33222111 114555555555432 3222333444444444433
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.43 E-value=6.9e-12 Score=131.60 Aligned_cols=326 Identities=12% Similarity=0.096 Sum_probs=164.9
Q ss_pred CccccC-CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCC
Q 041562 115 PSSLSS-NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLG 193 (653)
Q Consensus 115 p~~~~~-~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 193 (653)
..+|.. .+|+.+++..+ ++ .|+...|..+++|+.+++..+ ++.... .. +..+.+|+.+.+..+ +.......|.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~-~a-F~~c~~L~~i~~p~~-l~~i~~~aF~ 137 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGR-CT-FSGCYALKSILLPLM-LKSIGVEAFK 137 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECT-TT-TTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred HHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccc-hh-hcccccchhhcccCc-eeeecceeee
Confidence 344544 78888888743 66 778888888888988888755 332222 22 225777777666543 3333344555
Q ss_pred CCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeE
Q 041562 194 SCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESL 273 (653)
Q Consensus 194 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 273 (653)
++..++......... .-..+|.++++|+.+.+..+. ......+|.++.+|+.+++..+ ++......|.++..|+.+
T Consensus 138 ~~~~~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i 213 (394)
T 4fs7_A 138 GCDFKEITIPEGVTV--IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENM 213 (394)
T ss_dssp TCCCSEEECCTTCCE--ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBC
T ss_pred cccccccccCccccc--cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhcccccccee
Confidence 554433332222111 223456666777777776543 2233455666666776666554 333334455666666666
Q ss_pred EeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccc
Q 041562 274 VLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQL 353 (653)
Q Consensus 274 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 353 (653)
.+..+... +........+|+.+.+.... + .+....+..+..++.+.+..+... .....+..+..++.+....+.+
T Consensus 214 ~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i 288 (394)
T 4fs7_A 214 EFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV 288 (394)
T ss_dssp CCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE
T ss_pred ecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee
Confidence 65554322 22233344556666554332 1 233334555566666665554332 3344455555555555544332
Q ss_pred cccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccccCCCCCCCcCEEEccCCcCc
Q 041562 354 EGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRLTSANGFKNLQVLGLAECKLK 433 (653)
Q Consensus 354 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~ 433 (653)
. ...+..+.+|+.+.+..+ ++.+.. .+|.++.+|+.+++.++ ++
T Consensus 289 ~---~~~F~~~~~L~~i~l~~~-i~~I~~-------------------------------~aF~~c~~L~~i~lp~~-v~ 332 (394)
T 4fs7_A 289 P---EKTFYGCSSLTEVKLLDS-VKFIGE-------------------------------EAFESCTSLVSIDLPYL-VE 332 (394)
T ss_dssp C---TTTTTTCTTCCEEEECTT-CCEECT-------------------------------TTTTTCTTCCEECCCTT-CC
T ss_pred c---cccccccccccccccccc-cceech-------------------------------hhhcCCCCCCEEEeCCc-cc
Confidence 1 123444445555544332 222211 12334445555555432 33
Q ss_pred ccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 041562 434 GQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPAL 494 (653)
Q Consensus 434 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 494 (653)
..-..+|.+|++|+.+++..+ +.......|.++++|+.+++..+ +. .+..+|.++++|
T Consensus 333 ~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 333 EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKF 390 (394)
T ss_dssp EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEE
T ss_pred EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCC
Confidence 233445556666666666544 44334455666666666666543 11 223445555444
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=4.3e-13 Score=122.86 Aligned_cols=58 Identities=28% Similarity=0.295 Sum_probs=28.6
Q ss_pred cCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcc
Q 041562 422 LQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISG 482 (653)
Q Consensus 422 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 482 (653)
.+.+++++|.++ .+|..+ .++|++|+|++|++++..|..|..+++|++|+|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 68 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc
Confidence 345555555555 244333 1445555555555554444445555555555555555543
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=1.5e-15 Score=143.40 Aligned_cols=127 Identities=24% Similarity=0.241 Sum_probs=70.1
Q ss_pred cccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCC
Q 041562 239 GIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLK 318 (653)
Q Consensus 239 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~ 318 (653)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ ++ .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~--~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS--GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH--HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC--ccccCCC
Confidence 55555556666666555554 34 5555556666666666555 445444555556666666665553 33 3455556
Q ss_pred cCEEEccCCcccccCC-ccCcCCCCCCeEEccCccccccCch----------hhcCCCCCCEEE
Q 041562 319 LRVLDLGSNLFTGSLP-ITLNSCKSLTAVNLARNQLEGQISP----------GIVALKSLSFLS 371 (653)
Q Consensus 319 L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~----------~l~~l~~L~~L~ 371 (653)
|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 6666666665553211 2455566666666666666544332 255566666665
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.1e-15 Score=142.35 Aligned_cols=159 Identities=21% Similarity=0.254 Sum_probs=87.1
Q ss_pred CCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcccccccccCCCCCcEEE
Q 041562 171 FCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISGSIKNGIVNLTSLRILE 250 (653)
Q Consensus 171 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 250 (653)
...++.++++.+.+++..|. ++ .+|..+..+++|++|++++|.+.+ +| .+..+++|++|+
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~-----------------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~ 76 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPP-----------------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILS 76 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTT-----------------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEE
T ss_pred cccccCcchheeEeccccCc-----------------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEE
Confidence 45666666666666655443 11 222355555555555555555553 34 555556666666
Q ss_pred cccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhccCCCCcCEEEccCCccc
Q 041562 251 LYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFSTLLKLRVLDLGSNLFT 330 (653)
Q Consensus 251 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 330 (653)
+++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|++|++++|.+++..+...+..+++|++|++++|.+.
T Consensus 77 l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 77 LGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 6666555 344445555566666666666653 33 35556666666666666652111124556666666666666665
Q ss_pred ccCCcc----------CcCCCCCCeEEccCcccc
Q 041562 331 GSLPIT----------LNSCKSLTAVNLARNQLE 354 (653)
Q Consensus 331 ~~~~~~----------l~~l~~L~~L~L~~n~l~ 354 (653)
+..|.. +..+++|+.|+ ++.++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 154 NDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred cccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 544332 55666777665 44443
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=1.3e-12 Score=120.08 Aligned_cols=57 Identities=25% Similarity=0.330 Sum_probs=32.3
Q ss_pred CEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcc
Q 041562 423 QVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISG 482 (653)
Q Consensus 423 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 482 (653)
+.+++++|+++ .+|..+. ++|++|+|++|++.+..|..|..+++|++|+|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 71 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA 71 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc
Confidence 45666666665 4444332 556666666666655555555555556666666555554
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=4.6e-12 Score=115.98 Aligned_cols=86 Identities=31% Similarity=0.281 Sum_probs=44.8
Q ss_pred CCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEc
Q 041562 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNL 299 (653)
Q Consensus 220 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 299 (653)
++|++|+|++|.+++..|..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44555555555555444445555555555555555555444444455555555555555555444444555555555555
Q ss_pred cCCcCc
Q 041562 300 QSNFFE 305 (653)
Q Consensus 300 ~~n~l~ 305 (653)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 555554
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=9.3e-12 Score=114.31 Aligned_cols=86 Identities=29% Similarity=0.291 Sum_probs=41.3
Q ss_pred CCCCEEeccCCcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEc
Q 041562 220 TSLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNL 299 (653)
Q Consensus 220 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 299 (653)
++|++|+|++|.+.+..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 44444444444444444444445555555555555554433333444555555555555554333333444555555555
Q ss_pred cCCcCc
Q 041562 300 QSNFFE 305 (653)
Q Consensus 300 ~~n~l~ 305 (653)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 555444
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=1.1e-13 Score=143.43 Aligned_cols=137 Identities=19% Similarity=0.224 Sum_probs=68.3
Q ss_pred CCCCCEEECCCCCCCCCCCccccC------CCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCcccCChhhhh--
Q 041562 97 LTHLSHLNLSHNRLSGEFPSSLSS------NYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFTGLISWSAWV-- 168 (653)
Q Consensus 97 l~~L~~L~Ls~n~~~~~~p~~~~~------~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-- 168 (653)
+++|++|+|++|.++......+.. ++|++|+|++|.+++.....+...+++|++|+|++|.++......+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356777777777776433322221 467777777776654433344444556677777777665433222211
Q ss_pred -cCCCCCCEEEccCCcCccC----CCccCCCCCCCCEEEcccCCCCCC----ccccccCCCCCCEEeccCCcCc
Q 041562 169 -DSFCSIRHLDLSNNRFTGP----VPLGLGSCSRLKTFRAGFNYLTGS----LPDDIYTATSLEQLSLSFNHIS 233 (653)
Q Consensus 169 -~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~i~ 233 (653)
...++|++|+|++|.++.. ++..+..+++|++|++++|.+++. ++..+...++|++|+|++|.|+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 1345566666666665431 222223444455555555544421 1223333444444444444443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=3.3e-13 Score=139.79 Aligned_cols=164 Identities=18% Similarity=0.186 Sum_probs=79.1
Q ss_pred CCcCEEEccCCCCCCCCchHHHh----cCCCCcEEEccCCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCC
Q 041562 121 NYIKIIDLSSNHFQGKIPSTIFR----LTQNLITFNVSNNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCS 196 (653)
Q Consensus 121 ~~L~~L~Ls~n~l~~~ip~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 196 (653)
+.|++|+|++|.++......+.. ..++|++|+|++|.++......+. ..+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~-~~L~~L~~L~Ls~n~l~~~~~~~L---- 146 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLL-PVFLRARKLGLQLNSLGPEACKDL---- 146 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTH-HHHHTEEEEECCSSCCCHHHHHHH----
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHH-HHHHhccHhhcCCCCCCHHHHHHH----
Confidence 56777777777766322222211 124666666666665443222211 123455555555555543211111
Q ss_pred CCCEEEcccCCCCCCccccc-cCCCCCCEEeccCCcCcc----cccccccCCCCCcEEEcccCcCCcc----cCccccCC
Q 041562 197 RLKTFRAGFNYLTGSLPDDI-YTATSLEQLSLSFNHISG----SIKNGIVNLTSLRILELYSNSLTGL----IPRDIGKL 267 (653)
Q Consensus 197 ~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~i~~----~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l 267 (653)
...+ ...++|++|+|++|.++. .++..+..+++|++|+|++|.+++. ++..+...
T Consensus 147 ----------------~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 147 ----------------RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210 (372)
T ss_dssp ----------------HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred ----------------HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 0111 123455555555555543 1223334555566666666555432 13334455
Q ss_pred CCCCeEEeecCcCccc----CCccccCCCCCcEEEccCCcCc
Q 041562 268 TNLESLVLHNNSLSGS----LPSSLKNCINLTLLNLQSNFFE 305 (653)
Q Consensus 268 ~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~ 305 (653)
++|++|+|++|.+++. ++..+...++|++|++++|.++
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 5666666666666532 2233344566666666666665
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.23 E-value=1.5e-09 Score=113.69 Aligned_cols=132 Identities=15% Similarity=0.216 Sum_probs=61.3
Q ss_pred CCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCccc
Q 041562 333 LPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDR 412 (653)
Q Consensus 333 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 412 (653)
....|.++..|+.+.+..+... .....|..++.|+.+.+. +.++.++. ..|.+|.+|+.+.+..+ +. . ..
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~--~aF~~c~~L~~i~lp~~-v~-~----I~ 326 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPE--SVFAGCISLKSIDIPEG-IT-Q----IL 326 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECT--TTTTTCTTCCEEECCTT-CC-E----EC
T ss_pred ccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCc--eeecCCCCcCEEEeCCc-cc-E----eh
Confidence 3445666666666666544332 334455566666666664 23333332 34555666666655432 11 1 11
Q ss_pred ccCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCC
Q 041562 413 LTSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNN 478 (653)
Q Consensus 413 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 478 (653)
..+|.+|.+|+++.+..+ ++..-..+|.+|++|+.+++.++.... ..+..+..|+.+.+..+
T Consensus 327 ~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred HhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 123445556666665433 433334455566666666665554321 23444555555555444
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.21 E-value=2.3e-09 Score=112.27 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=27.3
Q ss_pred ccCeeecCCccCccccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCcc
Q 041562 549 LLHMLDLSHNNFSGNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNL 608 (653)
Q Consensus 549 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l 608 (653)
+|+.+.+..+ ++..-..+|.++++|+.+++.++.... ..+.....|+.+.+..|.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 4555555433 443445667777777777777765431 3455566677776665543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=6.3e-11 Score=122.00 Aligned_cols=105 Identities=21% Similarity=0.176 Sum_probs=84.9
Q ss_pred CEEEccCC-cCcccchhhhcCCccCCeeeCcC-CcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCCCCCccccc
Q 041562 423 QVLGLAEC-KLKGQVPSWIGKLKKLQVLDLSF-NQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLPALTPEQDK 500 (653)
Q Consensus 423 ~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~l~~~ 500 (653)
..++++++ +++ .+|. +..+++|++|+|++ |++.+..+..|..+++|++|+|++|+|++..|..|.+++
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-------- 80 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP-------- 80 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS--------
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc--------
Confidence 35688887 787 5777 88888899999986 888877778888899999999999988887777776654
Q ss_pred ccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccccccccccCCCCCeEeCC
Q 041562 501 NKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGNIPDQISQLTNLERMDLS 580 (653)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~LdLs 580 (653)
.|+.|||++|+|++..+..|..++ |+.|+|+
T Consensus 81 ------------------------------------------------~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~ 111 (347)
T 2ifg_A 81 ------------------------------------------------RLSRLNLSFNALESLSWKTVQGLS-LQELVLS 111 (347)
T ss_dssp ------------------------------------------------CCCEEECCSSCCSCCCSTTTCSCC-CCEEECC
T ss_pred ------------------------------------------------CCCEEeCCCCccceeCHHHcccCC-ceEEEee
Confidence 677889999999876666666665 8999999
Q ss_pred CCeeee
Q 041562 581 KNHLSG 586 (653)
Q Consensus 581 ~N~l~~ 586 (653)
+|.+..
T Consensus 112 ~N~~~c 117 (347)
T 2ifg_A 112 GNPLHC 117 (347)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 998874
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=1.1e-10 Score=120.15 Aligned_cols=92 Identities=22% Similarity=0.192 Sum_probs=47.3
Q ss_pred ccccccCCCCCCEEeccC-CcCcccccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccC
Q 041562 212 LPDDIYTATSLEQLSLSF-NHISGSIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKN 290 (653)
Q Consensus 212 ~p~~l~~l~~L~~L~Ls~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 290 (653)
+|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++..+..+..
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence 444 44455555555553 5555444445555555555555555555555555555555555555555555333333333
Q ss_pred CCCCcEEEccCCcCc
Q 041562 291 CINLTLLNLQSNFFE 305 (653)
Q Consensus 291 l~~L~~L~L~~n~l~ 305 (653)
++ |+.|++.+|.+.
T Consensus 103 ~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 103 LS-LQELVLSGNPLH 116 (347)
T ss_dssp CC-CCEEECCSSCCC
T ss_pred CC-ceEEEeeCCCcc
Confidence 33 555555555554
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.92 E-value=2.3e-07 Score=96.41 Aligned_cols=295 Identities=13% Similarity=0.140 Sum_probs=127.4
Q ss_pred CEEEEEcCCCCcceeccccccCCCCCCEEECCCCCCCCCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEcc
Q 041562 75 RVSHLWLPWKGLTGTISLSIGNLTHLSHLNLSHNRLSGEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVS 154 (653)
Q Consensus 75 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls 154 (653)
+++.+.+.. +++..-..+|.++.+|+.++|..+ ++.....+|...+|+.+.+..+ ++ .++...|.. .+|+.+.+.
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~-~I~~~aF~~-~~L~~i~lp 121 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VK-KFGDYVFQG-TDLDDFEFP 121 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CC-EECTTTTTT-CCCSEEECC
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCCCceEECCce-ee-Eeccceecc-CCcccccCC
Confidence 355555542 344333457788888888888643 5544445555566777666543 33 555555654 367777776
Q ss_pred CCcCcccCChhhhhcCCCCCCEEEccCCcCccCCCccCCCCCCCCEEEcccCCCCCCccccccCCCCCCEEeccCCcCcc
Q 041562 155 NNSFTGLISWSAWVDSFCSIRHLDLSNNRFTGPVPLGLGSCSRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNHISG 234 (653)
Q Consensus 155 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~i~~ 234 (653)
.+- +.... ..+ ...+++.+.+..+ ++......+..+.+++...+..+.........+ .. +. ..
T Consensus 122 ~~~-~~i~~-~~F--~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~-~~----------~~-~~ 184 (379)
T 4h09_A 122 GAT-TEIGN-YIF--YNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV-LY----------NK-NK 184 (379)
T ss_dssp TTC-CEECT-TTT--TTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTE-EE----------ET-TS
T ss_pred Ccc-ccccc-ccc--ccceeeeeeccce-eeccccchhcccccccccccccccceeecccce-ec----------cc-cc
Confidence 542 11111 111 1234555544432 222334455566666666554432211000000 00 00 00
Q ss_pred cccccccCCCCCcEEEcccCcCCcccCccccCCCCCCeEEeecCcCcccCCccccCCCCCcEEEccCCcCccccChhhcc
Q 041562 235 SIKNGIVNLTSLRILELYSNSLTGLIPRDIGKLTNLESLVLHNNSLSGSLPSSLKNCINLTLLNLQSNFFEGDISVFNFS 314 (653)
Q Consensus 235 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i~~~~~~ 314 (653)
.....+.....+..+.+.... .......+....+|+.+.+..+ +.......+.++..|+.+.+..+ ++ .+....|.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~ 260 (379)
T 4h09_A 185 TILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQ 260 (379)
T ss_dssp SEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTT
T ss_pred ceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccc
Confidence 111122223333333332211 1112223333444444444332 22122333444445555554433 22 23333444
Q ss_pred CCCCcCEEEccCCcccccCCccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCc
Q 041562 315 TLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLK 394 (653)
Q Consensus 315 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 394 (653)
.+.+|+.+.+..+ +.......|.+|++|+.+.+.++.++......|..+.+|+.+.+..+ ++.+.. .+|.+|.+|+
T Consensus 261 ~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~--~aF~~C~~L~ 336 (379)
T 4h09_A 261 NCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV--YAFKNCKALS 336 (379)
T ss_dssp TCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT--TTTTTCTTCC
T ss_pred eeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH--HHhhCCCCCC
Confidence 4555555554332 22223334445555555555544444333444555555555555432 332222 3355555555
Q ss_pred EEECC
Q 041562 395 VLIIP 399 (653)
Q Consensus 395 ~L~l~ 399 (653)
.+.+.
T Consensus 337 ~i~ip 341 (379)
T 4h09_A 337 TISYP 341 (379)
T ss_dssp CCCCC
T ss_pred EEEEC
Confidence 55554
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=3.3e-10 Score=116.29 Aligned_cols=84 Identities=14% Similarity=0.200 Sum_probs=47.7
Q ss_pred CCCCCCEEeccCCcCccccccccc---CCCCCcEEEcccCcCCcc----cCccccCCCCCCeEEeecCcCcccCCccccC
Q 041562 218 TATSLEQLSLSFNHISGSIKNGIV---NLTSLRILELYSNSLTGL----IPRDIGKLTNLESLVLHNNSLSGSLPSSLKN 290 (653)
Q Consensus 218 ~l~~L~~L~Ls~n~i~~~~~~~l~---~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 290 (653)
.+++|++|+|.+|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 356677777776666543332222 456777777777776653 2233345677777777777766433233332
Q ss_pred -CCCCcEEEccCCc
Q 041562 291 -CINLTLLNLQSNF 303 (653)
Q Consensus 291 -l~~L~~L~L~~n~ 303 (653)
+ ...++++.+.
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3456676665
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=7.8e-10 Score=113.46 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=87.1
Q ss_pred CCCcCEEEccCCcCcccchhhhc--CCccCCeeeCcC--CcCccC-----Cchhh--cCCCCCCEEEccCCcCcccCCcc
Q 041562 419 FKNLQVLGLAECKLKGQVPSWIG--KLKKLQVLDLSF--NQLTGS-----VPRFL--GNMSSLFHIDFSNNLISGEFPKE 487 (653)
Q Consensus 419 ~~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~--n~l~~~-----~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~ 487 (653)
.++|++|+|..|.+.......+. .+|+|+.|+|+. |...+. +...+ ..+++|++|+|++|.+.+..+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 46788888888887755444444 688888888853 222111 11122 24788999999988876433322
Q ss_pred ccCCCCCCcccccccccccccccccccCCcccccccccccccccccceeeeCChHHHhHHhccCeeecCCccCccc----
Q 041562 488 FCRLPALTPEQDKNKANESYLEFSLFKGSNNFIGEYKKILTFHEQYTWKTTASAAVSLLRLLLHMLDLSHNNFSGN---- 563 (653)
Q Consensus 488 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ip~~l~~l~~~L~~L~Ls~N~l~~~---- 563 (653)
+...+ .++ .|++|+|+.|.+.+.
T Consensus 272 la~a~----------------------------------------------------~~~-~L~~LdLs~n~L~d~G~~~ 298 (362)
T 2ra8_A 272 FLESD----------------------------------------------------ILP-QLETMDISAGVLTDEGARL 298 (362)
T ss_dssp HHHCS----------------------------------------------------SGG-GCSEEECCSSCCBHHHHHH
T ss_pred HHhCc----------------------------------------------------cCC-CCCEEECCCCCCChHHHHH
Confidence 22111 122 799999999999874
Q ss_pred cccccccCCCCCeEeCCCCeeeeecCccccc-CCCCCeeecCCCc
Q 041562 564 IPDQISQLTNLERMDLSKNHLSGEIPVSLKR-LHFLSAFNVAENN 607 (653)
Q Consensus 564 ~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~-l~~L~~L~ls~N~ 607 (653)
++..+..+++|+.|+|++|.++...-..+.. + ...++++.++
T Consensus 299 L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 299 LLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 4555567899999999999988644333443 2 3667888876
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.82 E-value=8.4e-07 Score=92.16 Aligned_cols=147 Identities=18% Similarity=0.200 Sum_probs=80.6
Q ss_pred CccCcCCCCCCeEEccCccccccCchhhcCCCCCCEEECCCCCCCCCCcchhhccCCCCCcEEECCCCCCCccCCCcccc
Q 041562 334 PITLNSCKSLTAVNLARNQLEGQISPGIVALKSLSFLSLSNNSLTNITGAIRILMGCKNLKVLIIPLNFMDETMPDNDRL 413 (653)
Q Consensus 334 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~ 413 (653)
...+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++.+.. ..+.++.+|+.+.+..+ +. .+ ..
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~--~aF~~~~~l~~i~l~~~-i~-~i----~~ 279 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS--FLLQNCTALKTLNFYAK-VK-TV----PY 279 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT--TTTTTCTTCCEEEECCC-CS-EE----CT
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc--cccceeehhcccccccc-ce-ec----cc
Confidence 344555566666665443 22233344555666666666543 332222 34555666666665432 11 11 11
Q ss_pred cCCCCCCCcCEEEccCCcCcccchhhhcCCccCCeeeCcCCcCccCCchhhcCCCCCCEEEccCCcCcccCCccccCCC
Q 041562 414 TSANGFKNLQVLGLAECKLKGQVPSWIGKLKKLQVLDLSFNQLTGSVPRFLGNMSSLFHIDFSNNLISGEFPKEFCRLP 492 (653)
Q Consensus 414 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 492 (653)
.+|.++.+|+.+.+.++.++......|.+|.+|+.++|..+ ++......|.++++|+.+.+..+ ++..-..+|.++.
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 23456677777777776666455566777777777777644 44344456777777777777544 4434445565554
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.59 E-value=4.4e-10 Score=109.30 Aligned_cols=21 Identities=14% Similarity=-0.081 Sum_probs=14.4
Q ss_pred CccccceEeCCCC-CEEEEEcC
Q 041562 62 CCLWEGIKCDANG-RVSHLWLP 82 (653)
Q Consensus 62 ~c~w~gv~c~~~~-~v~~L~L~ 82 (653)
.|.|.|+.|+..+ +|..+...
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~~ 98 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIINS 98 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEEE
T ss_pred HHhcCcEEECCCCCEEEEEEec
Confidence 4889999998644 55544443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=2.9e-08 Score=91.79 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=39.2
Q ss_pred ccCeeecCCccCccc----cccccccCCCCCeEeC--CCCeeeee----cCcccccCCCCCeeecCCCccc
Q 041562 549 LLHMLDLSHNNFSGN----IPDQISQLTNLERMDL--SKNHLSGE----IPVSLKRLHFLSAFNVAENNLR 609 (653)
Q Consensus 549 ~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdL--s~N~l~~~----ip~~l~~l~~L~~L~ls~N~l~ 609 (653)
.|++|+|++|.|.+. +...+...++|++|+| ++|.+... +.+.+...++|++|++++|.+.
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 566777777776643 3455666667777777 66777643 3344455577777777777764
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.33 E-value=1.3e-07 Score=87.42 Aligned_cols=12 Identities=17% Similarity=0.179 Sum_probs=5.5
Q ss_pred CCCCCEEEccCC
Q 041562 171 FCSIRHLDLSNN 182 (653)
Q Consensus 171 l~~L~~L~Ls~n 182 (653)
.+.|++|+|++|
T Consensus 35 ~~~L~~L~L~~n 46 (185)
T 1io0_A 35 DPDLEEVNLNNI 46 (185)
T ss_dssp CTTCCEEECTTC
T ss_pred CCCCCEEEecCC
Confidence 344444444444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.30 E-value=1.6e-07 Score=91.29 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=18.7
Q ss_pred CCccCCeeeCcCCcCcc--CCchhhcCCCCCCEEEccCCcCc
Q 041562 442 KLKKLQVLDLSFNQLTG--SVPRFLGNMSSLFHIDFSNNLIS 481 (653)
Q Consensus 442 ~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~ 481 (653)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|+|+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 34455555555555544 22333444445555555555444
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.90 E-value=3.6e-06 Score=75.76 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=37.6
Q ss_pred CCCEEeccCCcCcccccccccCCCCCcEEEcccCc-CCcccCccccCC----CCCCeEEeecCc-CcccCCccccCCCCC
Q 041562 221 SLEQLSLSFNHISGSIKNGIVNLTSLRILELYSNS-LTGLIPRDIGKL----TNLESLVLHNNS-LSGSLPSSLKNCINL 294 (653)
Q Consensus 221 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~L 294 (653)
.|++||++++.|+..--..+..+++|++|+|++|. +++..-..++.+ ++|++|+|++|. +++.--..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 44555555555444333444455555555555553 333222223332 245555555542 443322334455555
Q ss_pred cEEEccCC
Q 041562 295 TLLNLQSN 302 (653)
Q Consensus 295 ~~L~L~~n 302 (653)
++|+++++
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=8.2e-06 Score=73.39 Aligned_cols=84 Identities=18% Similarity=0.160 Sum_probs=48.0
Q ss_pred CCCCEEEcccCCCCCCccccccCCCCCCEEeccCCc-CcccccccccCC----CCCcEEEcccCc-CCcccCccccCCCC
Q 041562 196 SRLKTFRAGFNYLTGSLPDDIYTATSLEQLSLSFNH-ISGSIKNGIVNL----TSLRILELYSNS-LTGLIPRDIGKLTN 269 (653)
Q Consensus 196 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~ 269 (653)
.+|+.||++++.++..--..+..+++|++|+|++|. |++..-..++.+ ++|++|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 345566666655554444445566666666666663 554434444443 356777777663 55443344566677
Q ss_pred CCeEEeecCc
Q 041562 270 LESLVLHNNS 279 (653)
Q Consensus 270 L~~L~L~~n~ 279 (653)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777764
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.20 E-value=0.00017 Score=66.14 Aligned_cols=60 Identities=8% Similarity=0.160 Sum_probs=32.9
Q ss_pred ccCeeecCCccCccc----cccccccCCCCCeEeCCCC---eeee----ecCcccccCCCCCeeecCCCcc
Q 041562 549 LLHMLDLSHNNFSGN----IPDQISQLTNLERMDLSKN---HLSG----EIPVSLKRLHFLSAFNVAENNL 608 (653)
Q Consensus 549 ~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~LdLs~N---~l~~----~ip~~l~~l~~L~~L~ls~N~l 608 (653)
.|+.|+|++|.|.+. +-+.+..-+.|++|+|++| .+.. .+-+.+..-++|+.|++++|.+
T Consensus 99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 566666666666543 2334444456677777654 2322 2334455556677777766654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.92 E-value=0.00023 Score=65.14 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=7.3
Q ss_pred CCCCCEEeccCCcCc
Q 041562 219 ATSLEQLSLSFNHIS 233 (653)
Q Consensus 219 l~~L~~L~Ls~n~i~ 233 (653)
-+.|++|+|++|.|.
T Consensus 97 N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 97 SPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECCSSBCC
T ss_pred CCccCeEecCCCcCC
Confidence 344555555555444
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.62 E-value=0.0023 Score=54.58 Aligned_cols=57 Identities=19% Similarity=0.329 Sum_probs=40.7
Q ss_pred CeeecCCccCc-cccccccccCCCCCeEeCCCCeeeeecCcccccCCCCCeeecCCCccc
Q 041562 551 HMLDLSHNNFS-GNIPDQISQLTNLERMDLSKNHLSGEIPVSLKRLHFLSAFNVAENNLR 609 (653)
Q Consensus 551 ~~L~Ls~N~l~-~~~p~~l~~l~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~ls~N~l~ 609 (653)
..++.+++.++ ..+|..+. ++|++|||++|+|+..-+..|..+++|++|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36788888876 34565433 36888888888888555556777888888888888764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.45 E-value=0.0054 Score=52.26 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=36.2
Q ss_pred EEECCCCCCC-CCCCccccCCCcCEEEccCCCCCCCCchHHHhcCCCCcEEEccCCcCc
Q 041562 102 HLNLSHNRLS-GEFPSSLSSNYIKIIDLSSNHFQGKIPSTIFRLTQNLITFNVSNNSFT 159 (653)
Q Consensus 102 ~L~Ls~n~~~-~~~p~~~~~~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~Ls~n~l~ 159 (653)
+++.+++.++ ..+|..+. .+|++|+|++|+|+ .+|..+|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC-cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 4444555543 23333221 45677777777777 778878888888888888888764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.29 E-value=98 Score=24.06 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=17.3
Q ss_pred hccCCCCcCEEEccCCcccccCCccCcCCCCCCeEEccC
Q 041562 312 NFSTLLKLRVLDLGSNLFTGSLPITLNSCKSLTAVNLAR 350 (653)
Q Consensus 312 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 350 (653)
.|.++.+|+.+.+-.+ ++..-...|.+|.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 4444444444444433 2223334455555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.94 E-value=1.6e+02 Score=22.85 Aligned_cols=13 Identities=31% Similarity=0.171 Sum_probs=5.2
Q ss_pred cccCCCCCcEEEc
Q 041562 239 GIVNLTSLRILEL 251 (653)
Q Consensus 239 ~l~~l~~L~~L~L 251 (653)
+|.+|.+|+.+.+
T Consensus 38 aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 38 MFSGCTALEKLIL 50 (100)
T ss_dssp SSTTCTTCCCEEE
T ss_pred HHhccCCccEEEE
Confidence 3334444444433
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=20.46 E-value=33 Score=17.87 Aligned_cols=10 Identities=30% Similarity=1.172 Sum_probs=6.8
Q ss_pred CCCccccceE
Q 041562 60 TDCCLWEGIK 69 (653)
Q Consensus 60 ~~~c~w~gv~ 69 (653)
+..|+|+|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 3468888864
Done!