BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>041564
MMIKPQLWATATKTSSSRLNNRLKNQIIGSQTKKLSFLKKLYRLILPPSRFTCGFEAIQA
MLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGMHMRQSSNVEVPNGSDHDYDSVVPLD
PSKNSLNNECGIIYLSLILAEIFYDRVACEV

High Scoring Gene Products

Symbol, full name Information P value
AT1G51350 protein from Arabidopsis thaliana 1.6e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  041564
        (151 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2008246 - symbol:AT1G51350 "AT1G51350" species...    97  1.6e-06   2


>TAIR|locus:2008246 [details] [associations]
            symbol:AT1G51350 "AT1G51350" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009543
            "chloroplast thylakoid lumen" evidence=ISS] InterPro:IPR000225
            InterPro:IPR016024 SMART:SM00185 EMBL:CP002684
            GenomeReviews:CT485782_GR SUPFAM:SSF48371 Gene3D:1.25.10.10
            InterPro:IPR011989 eggNOG:COG5369 EMBL:AY093140 EMBL:BT008416
            IPI:IPI00536636 RefSeq:NP_175546.1 UniGene:At.37837
            ProteinModelPortal:Q8RWE7 SMR:Q8RWE7 PaxDb:Q8RWE7 PRIDE:Q8RWE7
            EnsemblPlants:AT1G51350.1 GeneID:841558 KEGG:ath:AT1G51350
            TAIR:At1g51350 HOGENOM:HOG000005742 InParanoid:Q8RWE7 OMA:HSNVKLQ
            PhylomeDB:Q8RWE7 ProtClustDB:CLSN2682963 ArrayExpress:Q8RWE7
            Genevestigator:Q8RWE7 Uniprot:Q8RWE7
        Length = 666

 Score = 97 (39.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query:    51 FTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQVAD 83
             F CGFEA +QA+LDAG+FP L  + +  DE+V D
Sbjct:    93 FACGFEAGVQAVLDAGVFPHLLRLLTNTDEKVVD 126

 Score = 71 (30.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 14/17 (82%), Positives = 17/17 (100%)

Query:    23 LKNQIIGSQTKKLSFLK 39
             +KNQIIG++TKKLSFLK
Sbjct:    43 VKNQIIGNRTKKLSFLK 59


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      151       151   0.00097  104 3  11 22  0.45    31
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  139 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.87u 0.11s 14.98t   Elapsed:  00:00:01
  Total cpu time:  14.87u 0.11s 14.98t   Elapsed:  00:00:01
  Start:  Fri May 10 19:17:43 2013   End:  Fri May 10 19:17:44 2013

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