BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041564
         (151 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
 pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
 pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
 pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
 pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
 pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
          Length = 210

 Score = 33.1 bits (74), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 52  TCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTML--LCKAEAGGMHMRQS 100
           + G E IQA++DAG  P L  + S  +EQ+    L  L    +GG   +Q+
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA 175



 Score = 32.3 bits (72), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 36  SFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTML--LCKAEAG 93
           S L+KL ++       + G E IQA++DAG  P L  + S  +EQ+    L  L    +G
Sbjct: 31  SALRKLSQI------ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84

Query: 94  GMHMRQS 100
           G    Q+
Sbjct: 85  GNEQIQA 91



 Score = 30.8 bits (68), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 52  TCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTML--LCKAEAGGMHMRQS 100
           + G E IQA++DAG  P L  + S  +EQ+    L  L    +GG    Q+
Sbjct: 83  SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133


>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
          Length = 210

 Score = 33.1 bits (74), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 52  TCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTML--LCKAEAGGMHMRQS 100
           + G E IQA++DAG  P L  + S  +EQ+    L  L    +GG   +Q+
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA 175



 Score = 32.0 bits (71), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 36  SFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTML--LCKAEAG 93
           S L+KL ++       + G E IQA++DAG  P L  + S  +EQ+    L  L    +G
Sbjct: 31  SALRKLSQI------ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84

Query: 94  GMHMRQS 100
           G    Q+
Sbjct: 85  GNEQIQA 91



 Score = 30.4 bits (67), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 52  TCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTML--LCKAEAGGMHMRQS 100
           + G E IQA++DAG  P L  + S  +EQ+    L  L    +GG    Q+
Sbjct: 83  SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133


>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
 pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
 pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
 pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
          Length = 252

 Score = 32.7 bits (73), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 52  TCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTML--LCKAEAGGMHMRQS 100
           + G E IQA++DAG  P L  + S  +EQ+    L  L    +GG   +Q+
Sbjct: 167 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA 217



 Score = 30.8 bits (68), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 33  KKLSFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTML--LCKA 90
           ++LS  +K  ++       + G E IQA++DAG  P L  + S  +EQ+    L  L   
Sbjct: 28  EQLSATRKFSQI------LSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81

Query: 91  EAGGMHMRQS 100
            +GG    Q+
Sbjct: 82  ASGGNEQIQA 91



 Score = 30.4 bits (67), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 52  TCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTML--LCKAEAGGMHMRQS 100
           + G E IQA++DAG  P L  + S  +EQ+    L  L    +GG    Q+
Sbjct: 83  SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133



 Score = 30.4 bits (67), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 52  TCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTML--LCKAEAGGMHMRQS 100
           + G E IQA++DAG  P L  + S  +EQ+    L  L    +GG    Q+
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 175


>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
 pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
 pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
 pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
          Length = 210

 Score = 32.7 bits (73), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 52  TCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTML--LCKAEAGGMHMRQS 100
           + G E IQA++DAG  P L  + S  +EQ+    L  L    +GG   +Q+
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA 175



 Score = 30.4 bits (67), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 8/70 (11%)

Query: 33  KKLSFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTML--LCKA 90
           ++LS  +K  ++       + G E IQA++DAG  P L  + S  +EQ+    L  L   
Sbjct: 28  EQLSATRKFSQI------LSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 81

Query: 91  EAGGMHMRQS 100
            +GG    Q+
Sbjct: 82  ASGGNEQIQA 91



 Score = 30.4 bits (67), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 52  TCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTML--LCKAEAGGMHMRQS 100
           + G E IQA++DAG  P L  + S  +EQ+    L  L    +GG    Q+
Sbjct: 83  SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133


>pdb|2DS4|A Chain A, Solution Structure Of The Filamin Domain From Human
           Tripartite Motif Protein 45
          Length = 113

 Score = 30.0 bits (66), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 14/70 (20%)

Query: 77  RDEQVADTMLLCKAEAGGMHMRQSSNVEVPNGSDHDYDSVVPLDPSKNSL-----NNECG 131
           R++Q A   LLCK  AG +  R   NV+V         +VVP D   + +     +N+ G
Sbjct: 25  REKQTASFTLLCKDAAGEIMGRGGDNVQV---------AVVPKDKKDSPVRTMVQDNKDG 75

Query: 132 IIYLSLILAE 141
             Y+S    E
Sbjct: 76  TYYISYTPKE 85


>pdb|1F0X|A Chain A, Crystal Structure Of D-Lactate Dehydrogenase, A Peripheral
           Membrane Respiratory Enzyme.
 pdb|1F0X|B Chain B, Crystal Structure Of D-Lactate Dehydrogenase, A Peripheral
           Membrane Respiratory Enzyme
          Length = 571

 Score = 28.9 bits (63), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 16/99 (16%)

Query: 30  SQTKKLSFLKKLYRLI---------LPPSRFTCGFEAIQAMLDAGLFPDLSLIFSR--RD 78
           + T   +FL +L RL+            +R+  GF + Q    A +FP   L   R  + 
Sbjct: 5   TTTDNKAFLNELARLVGSSHLLTDPAKTARYRKGFRSGQGDALAVVFPGSLLELWRVLKA 64

Query: 79  EQVADTMLLCKAEAGGMHMRQSSNVEVPNGSDHDYDSVV 117
              AD ++L +A   G+     +    PNG+D+D D V+
Sbjct: 65  CVTADKIILMQAANTGL-----TEGSTPNGNDYDRDVVI 98


>pdb|3H72|A Chain A, Crystal Structure Of Streptococcus Pneumoniae D39
           Neuraminidase A Precursor (Nana) In Complex With Nana
 pdb|3H72|B Chain B, Crystal Structure Of Streptococcus Pneumoniae D39
           Neuraminidase A Precursor (Nana) In Complex With Nana
 pdb|3H73|A Chain A, Crystal Structure Of Streptococcus Pneumoniae D39
           Neuraminidase A Precursor (Nana) In Complex With Dana
 pdb|3H73|B Chain B, Crystal Structure Of Streptococcus Pneumoniae D39
           Neuraminidase A Precursor (Nana) In Complex With Dana
          Length = 477

 Score = 28.1 bits (61), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 66  LFPDLSLIF---SRRDEQVAD------TMLLCKAEAGGMHMRQSSNVEVPNGSDHDYDSV 116
           +FP+   IF   S+++E           +L  + E G   +R++  V  P+G   DY  V
Sbjct: 119 MFPEGKGIFGMSSQKEEAYKKIDGKTYQILYREGEKGAYTIRENGTVYTPDGKATDYRVV 178

Query: 117 VPLDPSKNSLNNECGIIYLSLILAEIFY 144
           V  DP K + +++  +   + +L  I++
Sbjct: 179 V--DPVKPAYSDKGDLYKGNQLLGNIYF 204


>pdb|2W20|A Chain A, Structure Of The Catalytic Domain Of The Native Nana
           Sialidase From Streptococcus Pneumoniae
 pdb|2W20|B Chain B, Structure Of The Catalytic Domain Of The Native Nana
           Sialidase From Streptococcus Pneumoniae
          Length = 471

 Score = 28.1 bits (61), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 66  LFPDLSLIF---SRRDEQVAD------TMLLCKAEAGGMHMRQSSNVEVPNGSDHDYDSV 116
           +FP+   IF   S+++E           +L  + E G   +R++  V  P+G   DY  V
Sbjct: 115 MFPEGKGIFGMSSQKEEAYKKIDGKTYQILYREGEKGAYTIRENGTVYTPDGKATDYRVV 174

Query: 117 VPLDPSKNSLNNECGIIYLSLILAEIFY 144
           V  DP K + +++  +   + +L  I++
Sbjct: 175 V--DPVKPAYSDKGDLYKGNQLLGNIYF 200


>pdb|2VVZ|A Chain A, Structure Of The Catalytic Domain Of Streptococcus
           Pneumoniae Sialidase Nana
 pdb|2VVZ|B Chain B, Structure Of The Catalytic Domain Of Streptococcus
           Pneumoniae Sialidase Nana
          Length = 504

 Score = 28.1 bits (61), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 66  LFPDLSLIF---SRRDEQVAD------TMLLCKAEAGGMHMRQSSNVEVPNGSDHDYDSV 116
           +FP+   IF   S+++E           +L  + E G   +R++  V  P+G   DY  V
Sbjct: 117 MFPEGKGIFGMSSQKEEAYKKIDGKTYQILYREGEKGAYTIRENGTVYTPDGKATDYRVV 176

Query: 117 VPLDPSKNSLNNECGIIYLSLILAEIFY 144
           V  DP K + +++  +   + +L  I++
Sbjct: 177 V--DPVKPAYSDKGDLYKGNQLLGNIYF 202


>pdb|3H71|A Chain A, Crystal Structure Of Streptococcus Pneumoniae D39
           Neuraminidase A Precursor (Nana)
 pdb|3H71|B Chain B, Crystal Structure Of Streptococcus Pneumoniae D39
           Neuraminidase A Precursor (Nana)
          Length = 477

 Score = 28.1 bits (61), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 85  MLLCKAEAGGMHMRQSSNVEVPNGSDHDYDSVVPLDPSKNSLNNECGIIYLSLILAEIFY 144
           +L  + E G   +R++  V  P+G   DY  VV  DP K + +++  +   + +L  I++
Sbjct: 147 ILYREGEKGAYTIRENGTVYTPDGKATDYRVVV--DPVKPAYSDKGDLYKGNQLLGNIYF 204


>pdb|4ALO|A Chain A, Structure And Properties Of H1 Crustacyanin From Lobster
           Homarus Americanus
 pdb|4ALO|B Chain B, Structure And Properties Of H1 Crustacyanin From Lobster
           Homarus Americanus
          Length = 181

 Score = 28.1 bits (61), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)

Query: 34  KLSFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAG 93
           ++SF   L  L    S + C +  I    + G   D S IFSR        +  C+A   
Sbjct: 98  EMSFAAPLVILETDYSNYACLYSCID--YNFGYHSDFSFIFSRSANLADKYVKKCEAAFK 155

Query: 94  GMHMRQSSNVEVPNGSDHDYDS 115
            +++  +  V+   GS   YD+
Sbjct: 156 NINVDTTRFVKTVQGSSCPYDT 177


>pdb|2YA4|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
 pdb|2YA4|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
 pdb|2YA5|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
           In Complex With Sialic Acid
 pdb|2YA5|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
           In Complex With Sialic Acid
 pdb|2YA6|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
           In Complex With Dana
 pdb|2YA6|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
           In Complex With Dana
 pdb|2YA7|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
           In Complex With Zanamivir
 pdb|2YA7|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
           In Complex With Zanamivir
 pdb|2YA7|C Chain C, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
           In Complex With Zanamivir
 pdb|2YA7|D Chain D, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
           In Complex With Zanamivir
 pdb|2YA8|A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
           In Complex With Oseltamivir Carboxylate
 pdb|2YA8|B Chain B, Crystal Structure Of Streptococcus Pneumoniae Nana (Tigr4)
           In Complex With Oseltamivir Carboxylate
          Length = 493

 Score = 27.7 bits (60), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)

Query: 66  LFPDLSLIF---SRRDEQVAD------TMLLCKAEAGGMHMRQSSNVEVPNGSDHDYDSV 116
           +FP+   IF   S+++E           +L  + E G   +R++  V  P+G   DY  V
Sbjct: 136 MFPEGKGIFGMSSQKEEAYKKIDGKTYQILYREGEKGAYTIRENGTVYTPDGKATDYRVV 195

Query: 117 VPLDPSKNSLNNECGIIYLSLILAEIFY 144
           V  DP K + +++  +     +L  I++
Sbjct: 196 V--DPVKPAYSDKGDLYKGDQLLGNIYF 221


>pdb|1H91|A Chain A, The Crystal Structure Of Lobster Apocrustacyanin A1 Using
           Softer X-Rays.
 pdb|1H91|B Chain B, The Crystal Structure Of Lobster Apocrustacyanin A1 Using
           Softer X-Rays.
 pdb|1GKA|A Chain A, The Molecular Basis Of The Coloration Mechanism In Lobster
           Shell. Beta-Crustacyanin At 3.2 A Resolution
 pdb|1S44|A Chain A, The Structure And Refinement Of Apocrustacyanin C2 To 1.6a
           Resolution And The Search For Differences Between This
           Protein And The Homologous Apoproteins A1 And C1.
 pdb|1S44|B Chain B, The Structure And Refinement Of Apocrustacyanin C2 To 1.6a
           Resolution And The Search For Differences Between This
           Protein And The Homologous Apoproteins A1 And C1
          Length = 180

 Score = 26.9 bits (58), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 36  SFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGM 95
           SF   L  L    S + C +  I    + G   D S IFSR        +  C+A    +
Sbjct: 99  SFAAPLVILETDYSNYACLYSCID--YNFGYHSDFSFIFSRSANLADQYVKKCEAAFKNI 156

Query: 96  HMRQSSNVEVPNGSDHDYDS 115
           ++  +  V+   GS   YD+
Sbjct: 157 NVDTTRFVKTVQGSSCPYDT 176


>pdb|1S2P|A Chain A, The Structure And Refinement Of Apocrustacyanin C2 To 1.3a
           Resolution And The Search For Differences Between This
           Protein And The Homologous Apoproteins A1 And C1
 pdb|1S2P|B Chain B, The Structure And Refinement Of Apocrustacyanin C2 To 1.3a
           Resolution And The Search For Differences Between This
           Protein And The Homologous Apoproteins A1 And C1
          Length = 181

 Score = 26.9 bits (58), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 36  SFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGM 95
           SF   L  L    S + C +  I    + G   D S IFSR        +  C+A    +
Sbjct: 100 SFAAPLVILETDYSNYACLYSCID--YNFGYHSDFSFIFSRSANLADQYVKKCEAAFKNI 157

Query: 96  HMRQSSNVEVPNGSDHDYDS 115
           ++  +  V+   GS   YD+
Sbjct: 158 NVDTTRFVKTVQGSSCPYDT 177


>pdb|1I4U|A Chain A, The C1 Subunit Of Alpha-Crustacyanin
 pdb|1I4U|B Chain B, The C1 Subunit Of Alpha-Crustacyanin
 pdb|1OBQ|A Chain A, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
           Vapour Diffusion Geometry
 pdb|1OBQ|B Chain B, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
           Vapour Diffusion Geometry
 pdb|1OBU|A Chain A, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
           Vapour Diffusion Geometry
 pdb|1OBU|B Chain B, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
           Vapour Diffusion Geometry
          Length = 181

 Score = 26.6 bits (57), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 36  SFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGM 95
           SF   L  L    S + C +  I    + G   D S IFSR        +  C+A    +
Sbjct: 100 SFAAPLVILETDYSNYACLYSCID--YNFGYHSDFSFIFSRSANLADQYVKKCEAAFKNI 157

Query: 96  HMRQSSNVEVPNGSDHDYDS 115
           ++  +  V+   GS   YD+
Sbjct: 158 NVDTTRFVKTVQGSSCPYDT 177


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,075,922
Number of Sequences: 62578
Number of extensions: 141230
Number of successful extensions: 252
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 25
length of query: 151
length of database: 14,973,337
effective HSP length: 90
effective length of query: 61
effective length of database: 9,341,317
effective search space: 569820337
effective search space used: 569820337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)