BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041564
         (151 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8T9S7|PTEN_DICDI Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and
           dual-specificity protein phosphatase PTEN
           OS=Dictyostelium discoideum GN=pteN PE=2 SV=1
          Length = 533

 Score = 32.0 bits (71), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 11/90 (12%)

Query: 36  SFLKKLYRLILPPSRFTCGFEAIQAMLDAGLFPD---LSLIFSRRDEQVADTMLLCKAE- 91
           SF+++L   I+P S    G +      +   FP+   + L F + D+Q + T ++  AE 
Sbjct: 368 SFVQQL--EIIPKS----GLDKAHKDKNHKAFPEDFHVELTFDQLDQQQSHTTVVASAEE 421

Query: 92  -AGGMHMRQSSNVEVPNGSDHDYDSVVPLD 120
                H  QSSN    + S HD  +VV  D
Sbjct: 422 QTNNQHYPQSSNNVATSSSHHDNITVVASD 451


>sp|Q91W59|RBMS1_MOUSE RNA-binding motif, single-stranded-interacting protein 1 OS=Mus
           musculus GN=Rbms1 PE=2 SV=1
          Length = 403

 Score = 31.2 bits (69), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 86  LLCKAEAGGMHMRQSSNVEVPNG----SDHDYDSVVPLDPSKNSLNN 128
           LLCK   GG   RQ+ N  +PNG     D +    +  DP+  +L+N
Sbjct: 219 LLCKFADGGQKKRQNPNKYIPNGRPWPRDGEAGMTLTYDPTTAALHN 265


>sp|O83494|Y481_TREPA Uncharacterized protein TP_0481 OS=Treponema pallidum (strain
           Nichols) GN=TP_0481 PE=4 SV=1
          Length = 477

 Score = 30.8 bits (68), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/63 (26%), Positives = 31/63 (49%)

Query: 1   MMIKPQLWATATKTSSSRLNNRLKNQIIGSQTKKLSFLKKLYRLILPPSRFTCGFEAIQA 60
           M+++   W T  KTS +    R K Q + S    ++ +++    +  P  F  GF A++A
Sbjct: 206 MVVEGVTWNTPRKTSGALPPRRAKRQRVRSSNPLIAKIQEKAAELAAPVSFGAGFSALKA 265

Query: 61  MLD 63
            +D
Sbjct: 266 QVD 268


>sp|Q92154|SMP_COTJA Schwann cell myelin protein OS=Coturnix coturnix japonica GN=SMP
           PE=1 SV=1
          Length = 620

 Score = 30.0 bits (66), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 44  LILPPSRFTCGFEAIQAMLDAGLFPDLSLIFS--RRDEQVAD 83
           L+LP SR T G + ++ +      PD SL+F    R++ V+D
Sbjct: 413 LVLPASRCTAGGDGVRCVCMVNSIPDSSLVFELPTRNQTVSD 454


>sp|P25464|ACVS_ACRCH N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase
            OS=Acremonium chrysogenum GN=PCBAB PE=1 SV=1
          Length = 3712

 Score = 29.6 bits (65), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 38   LKKLYRLILPPSRFTCGFEAIQAMLDAGLFP 68
            L +LY ++LP S+++C F    A+LD    P
Sbjct: 1009 LMRLYLILLPDSKYSCLFSCHHAILDGWSLP 1039


>sp|Q5PQP1|RBMS1_RAT RNA-binding motif, single-stranded-interacting protein 1 OS=Rattus
           norvegicus GN=Rbms1 PE=2 SV=1
          Length = 403

 Score = 29.6 bits (65), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 86  LLCKAEAGGMHMRQSSNVEVPNG----SDHDYDSVVPLDPSKNSLNN 128
           LLCK   GG   RQ+ N  +PNG     + +    +  DP+  +L+N
Sbjct: 219 LLCKFADGGQKKRQNPNKYIPNGRPWPREGEAGMTLTYDPTTAALHN 265


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,358,383
Number of Sequences: 539616
Number of extensions: 1873874
Number of successful extensions: 4614
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4612
Number of HSP's gapped (non-prelim): 9
length of query: 151
length of database: 191,569,459
effective HSP length: 107
effective length of query: 44
effective length of database: 133,830,547
effective search space: 5888544068
effective search space used: 5888544068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)