Query 041564
Match_columns 151
No_of_seqs 30 out of 32
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 14:13:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4db6_A Armadillo repeat protei 98.1 8E-06 2.8E-10 57.4 6.7 79 16-94 29-125 (210)
2 4db6_A Armadillo repeat protei 97.9 1.8E-05 6.3E-10 55.6 5.7 79 16-94 71-167 (210)
3 4db8_A Armadillo-repeat protei 97.8 2.5E-05 8.7E-10 56.1 5.6 81 15-95 28-126 (252)
4 4hxt_A De novo protein OR329; 97.8 5.2E-05 1.8E-09 53.5 6.2 81 16-96 145-243 (252)
5 3ul1_B Importin subunit alpha- 97.8 1.6E-05 5.6E-10 65.7 4.1 59 36-94 95-172 (510)
6 4db8_A Armadillo-repeat protei 97.7 6.1E-05 2.1E-09 54.1 6.2 79 16-94 71-167 (252)
7 1xqr_A HSPBP1 protein; armadil 97.7 2.5E-05 8.4E-10 62.8 3.7 78 16-93 142-237 (296)
8 4hxt_A De novo protein OR329; 97.5 0.00018 6E-09 50.7 5.9 79 16-94 103-199 (252)
9 3tt9_A Plakophilin-2; cell adh 97.5 0.0001 3.6E-09 58.2 5.2 80 18-97 29-127 (233)
10 3nmw_A APC variant protein; AR 97.4 0.0002 7E-09 58.6 5.9 91 19-109 238-350 (354)
11 3tpo_A Importin subunit alpha- 97.4 0.00017 5.9E-09 59.5 5.3 60 35-94 113-191 (529)
12 1xm9_A Plakophilin 1; armadill 97.3 0.00041 1.4E-08 56.9 6.3 80 16-95 19-117 (457)
13 1xqr_A HSPBP1 protein; armadil 97.2 0.00044 1.5E-08 55.5 5.4 78 16-93 99-195 (296)
14 3tpo_A Importin subunit alpha- 97.1 0.00053 1.8E-08 56.6 5.5 77 17-93 311-405 (529)
15 4b8j_A Importin subunit alpha- 97.1 0.0007 2.4E-08 54.5 5.4 79 16-94 303-400 (528)
16 2jdq_A Importin alpha-1 subuni 97.0 0.00078 2.7E-08 51.7 5.1 77 17-93 252-346 (450)
17 3ul1_B Importin subunit alpha- 97.0 0.00081 2.8E-08 55.6 5.5 77 17-93 292-386 (510)
18 1wa5_B Importin alpha subunit; 97.0 0.0011 3.8E-08 53.7 6.1 77 17-93 317-411 (530)
19 2jdq_A Importin alpha-1 subuni 96.9 0.0012 4.2E-08 50.6 5.3 78 16-93 293-389 (450)
20 4b8j_A Importin subunit alpha- 96.8 0.0015 5.1E-08 52.6 5.4 78 17-94 262-358 (528)
21 3nmz_A APC variant protein; pr 96.8 0.0014 4.7E-08 56.1 5.2 76 19-94 354-450 (458)
22 1wa5_B Importin alpha subunit; 96.8 0.0022 7.6E-08 51.9 6.0 77 18-94 276-370 (530)
23 3l6x_A Catenin delta-1; cateni 96.7 0.0018 6.1E-08 57.6 5.7 78 17-94 66-163 (584)
24 3nmw_A APC variant protein; AR 96.1 0.0059 2E-07 50.0 4.7 76 19-94 191-292 (354)
25 3nmz_A APC variant protein; pr 95.5 0.019 6.5E-07 49.1 5.7 78 17-94 218-316 (458)
26 1jdh_A Beta-catenin; beta-cate 95.5 0.017 5.9E-07 45.4 5.0 80 16-95 34-131 (529)
27 2z6h_A Catenin beta-1, beta-ca 95.4 0.022 7.5E-07 47.9 5.5 78 17-94 116-212 (644)
28 3l6x_A Catenin delta-1; cateni 95.1 0.023 7.8E-07 50.6 5.1 74 18-93 374-475 (584)
29 1xm9_A Plakophilin 1; armadill 95.0 0.012 4E-07 48.3 2.7 49 47-95 25-74 (457)
30 2z6g_A B-catenin; FULL-length, 94.9 0.021 7.1E-07 50.3 4.1 78 16-94 210-305 (780)
31 3now_A UNC-45 protein, SD10334 94.8 0.019 6.5E-07 53.1 4.0 78 18-95 684-783 (810)
32 1jdh_A Beta-catenin; beta-cate 94.8 0.042 1.4E-06 43.1 5.4 78 17-94 119-215 (529)
33 2z6h_A Catenin beta-1, beta-ca 94.6 0.023 8E-07 47.7 3.7 77 17-94 75-169 (644)
34 3tt9_A Plakophilin-2; cell adh 94.5 0.016 5.5E-07 45.7 2.3 50 47-96 33-83 (233)
35 3now_A UNC-45 protein, SD10334 93.4 0.085 2.9E-06 48.8 5.2 82 19-100 601-700 (810)
36 2z6g_A B-catenin; FULL-length, 91.5 0.26 9.1E-06 43.4 5.6 77 18-94 418-518 (780)
37 1ibr_B P95, importin beta-1 su 75.3 0.75 2.6E-05 35.0 0.6 50 46-96 388-439 (462)
38 4gmo_A Putative uncharacterize 73.3 0.73 2.5E-05 40.2 0.1 48 47-94 163-214 (684)
39 3grl_A General vesicular trans 60.4 6.3 0.00022 36.3 3.5 46 47-92 189-239 (651)
40 4gmo_A Putative uncharacterize 60.3 6.7 0.00023 34.1 3.5 47 47-93 57-104 (684)
41 3b2a_A TON_1937, putative unch 58.1 14 0.00048 31.2 5.0 73 16-95 92-180 (265)
42 3opb_A SWI5-dependent HO expre 56.8 6.1 0.00021 37.0 2.9 46 47-93 480-529 (778)
43 4fdd_A Transportin-1; heat rep 55.3 4.3 0.00015 34.9 1.5 49 46-95 381-430 (852)
44 4fdd_A Transportin-1; heat rep 55.0 5.5 0.00019 34.2 2.1 47 47-93 609-657 (852)
45 3ltm_A Alpha-REP4; protein eng 53.5 14 0.00047 25.7 3.6 27 66-92 144-170 (211)
46 3ltj_A Alpharep-4; protein eng 52.7 14 0.00049 25.4 3.6 29 65-93 107-135 (201)
47 3ltm_A Alpha-REP4; protein eng 52.0 15 0.00051 25.5 3.6 29 65-93 112-140 (211)
48 1oyz_A Hypothetical protein YI 51.4 25 0.00086 25.5 4.9 30 64-93 53-82 (280)
49 3ltj_A Alpharep-4; protein eng 51.3 17 0.0006 25.0 3.8 30 64-93 137-166 (201)
50 1qgr_A Protein (importin beta 50.0 11 0.00039 31.3 3.1 49 46-95 388-438 (876)
51 2bpt_A Importin beta-1 subunit 48.3 11 0.00039 31.2 2.9 49 46-95 391-441 (861)
52 3opb_A SWI5-dependent HO expre 47.8 10 0.00035 35.5 2.8 37 58-94 450-486 (778)
53 1te4_A Conserved protein MTH18 45.7 15 0.00052 24.3 2.7 28 66-93 74-101 (131)
54 1oyz_A Hypothetical protein YI 41.1 31 0.001 25.0 3.9 30 64-93 158-187 (280)
55 1te4_A Conserved protein MTH18 39.4 25 0.00085 23.2 3.0 27 67-93 44-70 (131)
56 1v54_E Cytochrome C oxidase po 32.5 26 0.00088 26.2 2.4 19 77-95 43-61 (109)
57 2vgl_B AP-2 complex subunit be 30.0 31 0.0011 28.9 2.7 31 64-94 159-189 (591)
58 2qk2_A LP04448P; mini spindles 29.6 56 0.0019 23.5 3.8 47 47-94 80-127 (242)
59 2qk2_A LP04448P; mini spindles 28.3 57 0.0019 23.5 3.6 35 58-93 170-204 (242)
60 1ibr_B P95, importin beta-1 su 27.8 43 0.0015 25.3 2.9 30 64-93 127-158 (462)
61 1otk_A Protein PAAC, phenylace 25.6 28 0.00097 28.3 1.7 52 47-102 87-140 (249)
62 4ffb_C Protein STU2; tubulin f 23.2 62 0.0021 24.1 3.1 26 67-92 141-166 (278)
No 1
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.10 E-value=8e-06 Score=57.42 Aligned_cols=79 Identities=23% Similarity=0.301 Sum_probs=70.0
Q ss_pred chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564 16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR 77 (151)
Q Consensus 16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~ 77 (151)
+..|...|.|-..++...+..+++.| |.++ | +||.++.+.++ .+.+++.|++|.|+.+|.++
T Consensus 29 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~ 108 (210)
T 4db6_A 29 LQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 108 (210)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCC
Confidence 45678899999989999999999988 6533 2 89999999888 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcc
Q 041564 78 DEQVADTMLLCKAEAGG 94 (151)
Q Consensus 78 D~KVVEAcLRcLr~~~~ 94 (151)
|+.+.+.++.+|..++.
T Consensus 109 ~~~v~~~a~~~L~~l~~ 125 (210)
T 4db6_A 109 NEQILQEALWALSNIAS 125 (210)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHc
Confidence 99999999999998874
No 2
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.91 E-value=1.8e-05 Score=55.56 Aligned_cols=79 Identities=24% Similarity=0.286 Sum_probs=68.5
Q ss_pred chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564 16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR 77 (151)
Q Consensus 16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~ 77 (151)
+..|+..|.|-.-++...+..+++.| |.++ | +|+.++.+.++ .+.++++|++|.|+++|.++
T Consensus 71 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 150 (210)
T 4db6_A 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 150 (210)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC
Confidence 34568888898889989999999988 6533 2 89999988888 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcc
Q 041564 78 DEQVADTMLLCKAEAGG 94 (151)
Q Consensus 78 D~KVVEAcLRcLr~~~~ 94 (151)
|+++.+.++.+|..+..
T Consensus 151 ~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 151 NEQILQEALWALSNIAS 167 (210)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 99999999999998764
No 3
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.84 E-value=2.5e-05 Score=56.13 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=68.3
Q ss_pred cchhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhcc
Q 041564 15 SSSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSR 76 (151)
Q Consensus 15 ~s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~ 76 (151)
.+..|...+.|..-++...+..+++.| |.++ | +|+.++.+.++ .+.+++.|++|.|+++|.+
T Consensus 28 ~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~ 107 (252)
T 4db8_A 28 EQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 107 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 455778888887777777778888888 6533 2 89999998888 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccc
Q 041564 77 RDEQVADTMLLCKAEAGGM 95 (151)
Q Consensus 77 ~D~KVVEAcLRcLr~~~~~ 95 (151)
+|+.+.+.|+.+|..++.-
T Consensus 108 ~~~~v~~~a~~~L~~l~~~ 126 (252)
T 4db8_A 108 PNEQILQEALWALSNIASG 126 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHhhcC
Confidence 9999999999999988643
No 4
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.78 E-value=5.2e-05 Score=53.48 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=68.9
Q ss_pred chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564 16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR 77 (151)
Q Consensus 16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~ 77 (151)
+..|+..+.|..-++...+..+++.| |.++ | +|+.++.+.++ .+.+.+.|++|.|++++.++
T Consensus 145 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~ 224 (252)
T 4hxt_A 145 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST 224 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC
Confidence 45568888898888888888888888 5422 2 89999998888 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcccc
Q 041564 78 DEQVADTMLLCKAEAGGMH 96 (151)
Q Consensus 78 D~KVVEAcLRcLr~~~~~h 96 (151)
|+.+.+.++.+|+-+...+
T Consensus 225 ~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 225 DSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp CHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHcCC
Confidence 9999999999999887544
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.77 E-value=1.6e-05 Score=65.65 Aligned_cols=59 Identities=12% Similarity=0.345 Sum_probs=52.9
Q ss_pred HHHHhh--hhhh--h--------------cccccccChHH-HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhcc
Q 041564 36 SFLKKL--YRLI--L--------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGG 94 (151)
Q Consensus 36 sfI~lG--PrlI--L--------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~ 94 (151)
.+|+.| |+++ | +|+.+|+|.++ .++++++|++|.|+++|.++++.+.|.|+.||...+.
T Consensus 95 ~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~ 172 (510)
T 3ul1_B 95 NIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 172 (510)
T ss_dssp HHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 577888 8755 3 89999999999 9999999999999999999999999999999987764
No 6
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.74 E-value=6.1e-05 Score=54.12 Aligned_cols=79 Identities=24% Similarity=0.286 Sum_probs=69.3
Q ss_pred chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564 16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR 77 (151)
Q Consensus 16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~ 77 (151)
+..|+..|.|-.-|+...+..+++.| |.++ | +|+.++.+.+. .+.+++.|++|.|+++|.++
T Consensus 71 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 150 (252)
T 4db8_A 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 150 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC
Confidence 44568889999999999999999988 5532 2 89999999888 69999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcc
Q 041564 78 DEQVADTMLLCKAEAGG 94 (151)
Q Consensus 78 D~KVVEAcLRcLr~~~~ 94 (151)
|+.+.+.++.+|..++.
T Consensus 151 ~~~v~~~a~~~L~~l~~ 167 (252)
T 4db8_A 151 NEQILQEALWALSNIAS 167 (252)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 99999999999998875
No 7
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.68 E-value=2.5e-05 Score=62.77 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=66.6
Q ss_pred chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564 16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR 77 (151)
Q Consensus 16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~ 77 (151)
+.+|+..|-|.+=|+...+..|++.| |.++ | +|+.++.|.++ .+.++++|++|.|+.+|.++
T Consensus 142 ~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~ 221 (296)
T 1xqr_A 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE 221 (296)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC
Confidence 45678888888888888888999887 6533 2 88999988887 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc
Q 041564 78 DEQVADTMLLCKAEAG 93 (151)
Q Consensus 78 D~KVVEAcLRcLr~~~ 93 (151)
|.++.|.++++|....
T Consensus 222 d~~v~~~al~aL~~l~ 237 (296)
T 1xqr_A 222 HSPFHEHVLGALCSLV 237 (296)
T ss_dssp CSTHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHH
Confidence 9999999999996543
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.53 E-value=0.00018 Score=50.75 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=67.3
Q ss_pred chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564 16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR 77 (151)
Q Consensus 16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~ 77 (151)
+..|+..+.|-.-++...+..+++.| |.++ | +|+.++.+.++ .+.+++.|++|.|+.+|.++
T Consensus 103 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~ 182 (252)
T 4hxt_A 103 QKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST 182 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC
Confidence 34567778888878888888888887 5422 2 89999999888 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcc
Q 041564 78 DEQVADTMLLCKAEAGG 94 (151)
Q Consensus 78 D~KVVEAcLRcLr~~~~ 94 (151)
|+.+.+.++++|..+..
T Consensus 183 ~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 183 DSEVQKEAARALANIAS 199 (252)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 99999999999998875
No 9
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.52 E-value=0.0001 Score=58.23 Aligned_cols=80 Identities=8% Similarity=0.028 Sum_probs=69.4
Q ss_pred hHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhc-cCC
Q 041564 18 RLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFS-RRD 78 (151)
Q Consensus 18 rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs-~~D 78 (151)
-|..+|.|...++...|..+++.| |.++ | +|+.++.+.++ -.++.++|++|.|+++|. .++
T Consensus 29 ~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~ 108 (233)
T 3tt9_A 29 AAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRD 108 (233)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCC
Confidence 467889999999999999999998 7644 3 89999998777 889999999999999997 579
Q ss_pred HHHHHHHHHHHHHhccccc
Q 041564 79 EQVADTMLLCKAEAGGMHM 97 (151)
Q Consensus 79 ~KVVEAcLRcLr~~~~~h~ 97 (151)
..+-|.++.+|..++..+.
T Consensus 109 ~~~~e~a~~aL~nLS~~~~ 127 (233)
T 3tt9_A 109 LETKKQITGLLWNLSSNDK 127 (233)
T ss_dssp HHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHHHHcChh
Confidence 9999999999999987654
No 10
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.42 E-value=0.0002 Score=58.61 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=66.3
Q ss_pred HHhhhhhhhc---ccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564 19 LNNRLKNQII---GSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR 77 (151)
Q Consensus 19 Alr~IKNqII---GNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~ 77 (151)
|...|.|--. |+...+..+++.| |.++ | +|+.++.|.++ .+.++++|++|.|+.+|.+.
T Consensus 238 A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~ 317 (354)
T 3nmw_A 238 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK 317 (354)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC
Confidence 4445666554 7888888899988 6644 2 88889988888 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccccccc-ccceecCCCC
Q 041564 78 DEQVADTMLLCKAEAGGMHMRQ-SSNVEVPNGS 109 (151)
Q Consensus 78 D~KVVEAcLRcLr~~~~~h~~~-~~~~~~~~~~ 109 (151)
++++.+.++.+|+.+.....-+ +...-+|.||
T Consensus 318 ~~~i~~~A~~aL~nL~~~~~~~~~~~~~~~~~~ 350 (354)
T 3nmw_A 318 HKMIAMGSAAALRNLMANRPAKYKDANIMSPGS 350 (354)
T ss_dssp SHHHHHHHHHHHHHHHTTCCGGGC---------
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHhhhcccCCcC
Confidence 9999999999999887664332 2333455554
No 11
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.41 E-value=0.00017 Score=59.51 Aligned_cols=60 Identities=12% Similarity=0.318 Sum_probs=53.1
Q ss_pred hHHHHhh--hhhh--h--------------cccccccChHH-HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhcc
Q 041564 35 LSFLKKL--YRLI--L--------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGG 94 (151)
Q Consensus 35 lsfI~lG--PrlI--L--------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~ 94 (151)
-.+|+.| |+++ | +|+.+|+|.++ .++++++|++|.|+.+|.++++.+.|.|+.+|.-.+.
T Consensus 113 ~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~ 191 (529)
T 3tpo_A 113 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG 191 (529)
T ss_dssp HHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 4678888 8744 2 89999999999 9999999999999999999999999999999987764
No 12
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.30 E-value=0.00041 Score=56.89 Aligned_cols=80 Identities=4% Similarity=-0.027 Sum_probs=67.2
Q ss_pred chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhc-c
Q 041564 16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFS-R 76 (151)
Q Consensus 16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs-~ 76 (151)
...|...|.|--.++...|..+++.| |.++ | +|..++.+.++ -..++++|++|.|+++|. +
T Consensus 19 q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~ 98 (457)
T 1xm9_A 19 QAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT 98 (457)
T ss_dssp HHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhC
Confidence 45678899998888888888899998 7644 3 88888888666 777889999999999998 8
Q ss_pred CCHHHHHHHHHHHHHhccc
Q 041564 77 RDEQVADTMLLCKAEAGGM 95 (151)
Q Consensus 77 ~D~KVVEAcLRcLr~~~~~ 95 (151)
+++.+.|.++.+|..++.-
T Consensus 99 ~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 99 GNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp CCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHhcC
Confidence 8999999999999877753
No 13
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.20 E-value=0.00044 Score=55.50 Aligned_cols=78 Identities=13% Similarity=-0.003 Sum_probs=66.4
Q ss_pred chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h--------------cccccccChHH-HHHHHhcCChHHHHhhhcc
Q 041564 16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L--------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSR 76 (151)
Q Consensus 16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L--------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~ 76 (151)
+..|...|-|..=+|...+..+++.| |.++ | +|++++.|.+. .++++++|++|.|+.+|.+
T Consensus 99 r~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~ 178 (296)
T 1xqr_A 99 RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 178 (296)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcC
Confidence 34578888888878888888899988 5533 2 89999999988 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 041564 77 RDEQVADTMLLCKAEAG 93 (151)
Q Consensus 77 ~D~KVVEAcLRcLr~~~ 93 (151)
+|.++-..++.+|.-+.
T Consensus 179 ~d~~v~~~A~~aLs~L~ 195 (296)
T 1xqr_A 179 QVQKLKVKSAFLLQNLL 195 (296)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999998764
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.15 E-value=0.00053 Score=56.58 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=67.0
Q ss_pred hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccCC
Q 041564 17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRD 78 (151)
Q Consensus 17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D 78 (151)
..|++.|.|-.-|+...+..++..| |.++ | +|+.++.|.++ .+.++++|++|.|+.+|.+++
T Consensus 311 ~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~ 390 (529)
T 3tpo_A 311 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 390 (529)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC
Confidence 3468889999999999999999998 4422 2 89999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 041564 79 EQVADTMLLCKAEAG 93 (151)
Q Consensus 79 ~KVVEAcLRcLr~~~ 93 (151)
.++...|+.+|+-+.
T Consensus 391 ~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 391 FKTQKAAAWAITNYT 405 (529)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988654
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.07 E-value=0.0007 Score=54.53 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=67.0
Q ss_pred chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h--------------cccccccChHH-HHHHHhcCChHHHHhhhcc
Q 041564 16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L--------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSR 76 (151)
Q Consensus 16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L--------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~ 76 (151)
+..|+..|-|..-|+......+++.| |.++ | +|+.++.|.++ ++.++++|++|.|+.+|.+
T Consensus 303 ~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~ 382 (528)
T 4b8j_A 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT 382 (528)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc
Confidence 34578889999999988888888777 5422 2 89999999888 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcc
Q 041564 77 RDEQVADTMLLCKAEAGG 94 (151)
Q Consensus 77 ~D~KVVEAcLRcLr~~~~ 94 (151)
.|.++.+.++.+|.-+..
T Consensus 383 ~~~~v~~~a~~aL~nl~~ 400 (528)
T 4b8j_A 383 AEFDIKKEAAWAISNATS 400 (528)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHc
Confidence 999999999999987653
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.04 E-value=0.00078 Score=51.69 Aligned_cols=77 Identities=25% Similarity=0.300 Sum_probs=63.9
Q ss_pred hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccCC
Q 041564 17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRD 78 (151)
Q Consensus 17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D 78 (151)
..|+..+.|-.-|+..++..+++.| |.++ | +||.++.|.++ .+.++++|++|.|+.+|.+++
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~ 331 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE 331 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC
Confidence 4567788888888777777777776 4422 2 89999999988 999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 041564 79 EQVADTMLLCKAEAG 93 (151)
Q Consensus 79 ~KVVEAcLRcLr~~~ 93 (151)
+++..+++.+|.-+.
T Consensus 332 ~~v~~~a~~~L~~l~ 346 (450)
T 2jdq_A 332 FRTRKEAAWAITNAT 346 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988764
No 17
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.03 E-value=0.00081 Score=55.58 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=67.2
Q ss_pred hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccCC
Q 041564 17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRD 78 (151)
Q Consensus 17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D 78 (151)
..+++.|.|-.-|+...+..++..| |.++ | +|+-++.|.++ .+.++++|++|.|+.+|.+.|
T Consensus 292 ~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~ 371 (510)
T 3ul1_B 292 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 371 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred hHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCC
Confidence 4568889999999999999999998 4422 2 89999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 041564 79 EQVADTMLLCKAEAG 93 (151)
Q Consensus 79 ~KVVEAcLRcLr~~~ 93 (151)
.++...|+.+|+-+.
T Consensus 372 ~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 372 FKTQKEAAWAITNYT 386 (510)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998654
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.02 E-value=0.0011 Score=53.73 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=65.2
Q ss_pred hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccCC
Q 041564 17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRD 78 (151)
Q Consensus 17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D 78 (151)
..|+..|.|-.-|+......++..| |.++ | +||.++.|.++ ++.++++|++|.|+.+|.+++
T Consensus 317 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 396 (530)
T 1wa5_B 317 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAE 396 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC
Confidence 3567888888888888777788777 5422 2 89999998888 999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 041564 79 EQVADTMLLCKAEAG 93 (151)
Q Consensus 79 ~KVVEAcLRcLr~~~ 93 (151)
+++.++++.+|.-+.
T Consensus 397 ~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 397 YKTKKEACWAISNAS 411 (530)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.93 E-value=0.0012 Score=50.59 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=62.7
Q ss_pred chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccC-hHH-HHHHHhcCChHHHHhhhcc
Q 041564 16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCG-FEA-IQAMLDAGLFPDLSLIFSR 76 (151)
Q Consensus 16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG-~Ea-VkaLLdaGvvP~Ll~lLs~ 76 (151)
+..|+..|.|-.-|+......+++.| |.++ | +||.++.+ .++ ++.+++.|++|.|+.+|.+
T Consensus 293 r~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~ 372 (450)
T 2jdq_A 293 KKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV 372 (450)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 34567888888878887777777766 5422 2 88888865 556 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc
Q 041564 77 RDEQVADTMLLCKAEAG 93 (151)
Q Consensus 77 ~D~KVVEAcLRcLr~~~ 93 (151)
+|.++.+.++.+|....
T Consensus 373 ~~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 373 MDSKIVQVALNGLENIL 389 (450)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999987654
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.84 E-value=0.0015 Score=52.58 Aligned_cols=78 Identities=15% Similarity=0.180 Sum_probs=66.2
Q ss_pred hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC-
Q 041564 17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR- 77 (151)
Q Consensus 17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~- 77 (151)
..|+..+.|-.-|+..+...++..| |+++ | +||.++.|.+. .+.++++|++|.|+.+|.++
T Consensus 262 ~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~ 341 (528)
T 4b8j_A 262 TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL 341 (528)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC
Confidence 4567778888888888878888877 6533 2 89999999999 99999999999999999998
Q ss_pred CHHHHHHHHHHHHHhcc
Q 041564 78 DEQVADTMLLCKAEAGG 94 (151)
Q Consensus 78 D~KVVEAcLRcLr~~~~ 94 (151)
++.+.+.++.+|.-+..
T Consensus 342 ~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 342 KKSIKKEACWTISNITA 358 (528)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHC
Confidence 99999999999988764
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.81 E-value=0.0014 Score=56.11 Aligned_cols=76 Identities=12% Similarity=0.061 Sum_probs=63.6
Q ss_pred HHhhhhhhhc---ccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564 19 LNNRLKNQII---GSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR 77 (151)
Q Consensus 19 Alr~IKNqII---GNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~ 77 (151)
|.-.|.|--. |+...+..+++.| |.++ | +|+-++.|.++ .+.++++|++|.|+.+|.+.
T Consensus 354 A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~ 433 (458)
T 3nmz_A 354 GGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK 433 (458)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC
Confidence 4455666554 8888898999988 6644 2 88889988888 99999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcc
Q 041564 78 DEQVADTMLLCKAEAGG 94 (151)
Q Consensus 78 D~KVVEAcLRcLr~~~~ 94 (151)
++++.+.|+.+|+-+.-
T Consensus 434 ~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 434 HKMIAMGSAAALRNLMA 450 (458)
T ss_dssp SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHc
Confidence 99999999999998754
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.77 E-value=0.0022 Score=51.95 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=64.9
Q ss_pred hHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccCCH
Q 041564 18 RLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDE 79 (151)
Q Consensus 18 rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~ 79 (151)
.|+..|.|-.-++......+++.| |.++ | +||.++.|.++ .+.++++|++|.|+.+|.++++
T Consensus 276 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~ 355 (530)
T 1wa5_B 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE 355 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCH
Confidence 467777887777777777777777 6532 2 89999999988 9999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 041564 80 QVADTMLLCKAEAGG 94 (151)
Q Consensus 80 KVVEAcLRcLr~~~~ 94 (151)
.+.++++.+|..++.
T Consensus 356 ~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 356 NIKKEACWTISNITA 370 (530)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999998875
No 23
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=96.75 E-value=0.0018 Score=57.61 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=67.1
Q ss_pred hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccC--hHHHHHHHhcCChHHHHhhhcc-
Q 041564 17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCG--FEAIQAMLDAGLFPDLSLIFSR- 76 (151)
Q Consensus 17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG--~EaVkaLLdaGvvP~Ll~lLs~- 76 (151)
..|...|.|-..++...|..+++.| |.++ | +|+.+|.| .++-.++.++|++|.|+++|.+
T Consensus 66 ~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~ 145 (584)
T 3l6x_A 66 SNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA 145 (584)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence 4578889999999999999999999 7654 3 89999987 3448889999999999999986
Q ss_pred CCHHHHHHHHHHHHHhcc
Q 041564 77 RDEQVADTMLLCKAEAGG 94 (151)
Q Consensus 77 ~D~KVVEAcLRcLr~~~~ 94 (151)
.+..+-|.++.||..++.
T Consensus 146 ~~~~~~e~aa~aL~nLS~ 163 (584)
T 3l6x_A 146 RDMDLTEVITGTLWNLSS 163 (584)
T ss_dssp CSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 688899999999988886
No 24
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=96.09 E-value=0.0059 Score=49.96 Aligned_cols=76 Identities=11% Similarity=-0.040 Sum_probs=58.7
Q ss_pred HHhhhhhhhcccchhHhHHH-Hhh--hhhh--h-----------------ccccccc---ChHH-HHHHHhcCChHHHHh
Q 041564 19 LNNRLKNQIIGSQTKKLSFL-KKL--YRLI--L-----------------PPSRFTC---GFEA-IQAMLDAGLFPDLSL 72 (151)
Q Consensus 19 Alr~IKNqIIGNntKKlsfI-~lG--PrlI--L-----------------VLGSFAc---G~Ea-VkaLLdaGvvP~Ll~ 72 (151)
|+.-+.|-..++...|..+. ..| |.++ | +|..++. |.++ .+.+.++|++|.|+.
T Consensus 191 A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~ 270 (354)
T 3nmw_A 191 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 270 (354)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHH
Confidence 45677888777766666776 567 5422 1 3444444 6677 999999999999999
Q ss_pred hhccCCHHHHHHHHHHHHHhcc
Q 041564 73 IFSRRDEQVADTMLLCKAEAGG 94 (151)
Q Consensus 73 lLs~~D~KVVEAcLRcLr~~~~ 94 (151)
+|.+++.++.+.|+++|..++.
T Consensus 271 lL~~~~~~v~~~A~~aL~nLa~ 292 (354)
T 3nmw_A 271 HLKSHSLTIVSNACGTLWNLSA 292 (354)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTS
T ss_pred HHcCCChHHHHHHHHHHHHHhC
Confidence 9999999999999999998874
No 25
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=95.53 E-value=0.019 Score=49.06 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=61.3
Q ss_pred hhHHhhhhhhhcccchhHhHHHH-hh--hhhh--h-------------cccccccCh-HH-HHHHHhcCChHHHHhhh-c
Q 041564 17 SRLNNRLKNQIIGSQTKKLSFLK-KL--YRLI--L-------------PPSRFTCGF-EA-IQAMLDAGLFPDLSLIF-S 75 (151)
Q Consensus 17 ~rAlr~IKNqIIGNntKKlsfI~-lG--PrlI--L-------------VLGSFAcG~-Ea-VkaLLdaGvvP~Ll~lL-s 75 (151)
..|...|.|--.|+...|..+.. .| |.++ | +|+.++++. ++ -+.+.++|++|.|+++| .
T Consensus 218 ~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~ 297 (458)
T 3nmz_A 218 RYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE 297 (458)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc
Confidence 45677888988888877777654 35 6543 2 888889873 44 78889999999999975 5
Q ss_pred cCCHHHHHHHHHHHHHhcc
Q 041564 76 RRDEQVADTMLLCKAEAGG 94 (151)
Q Consensus 76 ~~D~KVVEAcLRcLr~~~~ 94 (151)
+.++.+.+.++++|.-++.
T Consensus 298 s~~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 298 VKKESTLKSVLSALWNLSA 316 (458)
T ss_dssp CCSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcc
Confidence 6789999999999998876
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=95.51 E-value=0.017 Score=45.38 Aligned_cols=80 Identities=8% Similarity=-0.001 Sum_probs=59.5
Q ss_pred chhHHhhhhhhhcccchhHhHHHHhh--hhhh----------------hcccccccChHHHHHHHhcCChHHHHhhhccC
Q 041564 16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI----------------LPPSRFTCGFEAIQAMLDAGLFPDLSLIFSRR 77 (151)
Q Consensus 16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI----------------LVLGSFAcG~EaVkaLLdaGvvP~Ll~lLs~~ 77 (151)
+.+|+..+.|-..++..++..+-..| |.++ -+|+.++...+..+.+.+.|++|.|+++|.++
T Consensus 34 ~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~ 113 (529)
T 1jdh_A 34 VNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSP 113 (529)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCC
Confidence 55778888887776654433222223 3211 17888887766588899999999999999999
Q ss_pred CHHHHHHHHHHHHHhccc
Q 041564 78 DEQVADTMLLCKAEAGGM 95 (151)
Q Consensus 78 D~KVVEAcLRcLr~~~~~ 95 (151)
|+.+.+.++++|+..+..
T Consensus 114 ~~~v~~~a~~~L~~l~~~ 131 (529)
T 1jdh_A 114 VDSVLFYAITTLHNLLLH 131 (529)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcC
Confidence 999999999999988654
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.37 E-value=0.022 Score=47.87 Aligned_cols=78 Identities=14% Similarity=0.014 Sum_probs=63.1
Q ss_pred hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC-
Q 041564 17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR- 77 (151)
Q Consensus 17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~- 77 (151)
..|+..|.|-..++...+..+++.| |.++ | +|+.+++|.++ -+.+.+.|++|.|+++|.+.
T Consensus 116 ~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~ 195 (644)
T 2z6h_A 116 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195 (644)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC
Confidence 4567888888888777788888887 6533 2 67788888888 88899999999999999665
Q ss_pred CHHHHHHHHHHHHHhcc
Q 041564 78 DEQVADTMLLCKAEAGG 94 (151)
Q Consensus 78 D~KVVEAcLRcLr~~~~ 94 (151)
++++.++++++|+.++.
T Consensus 196 ~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 196 YEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 57889999999888764
No 28
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=95.13 E-value=0.023 Score=50.57 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=57.2
Q ss_pred hHHhhhhhhhcccchhHhHHHHhh--hhhh--h---------------------cccccccChHH-HHHHHhcCChHHHH
Q 041564 18 RLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L---------------------PPSRFTCGFEA-IQAMLDAGLFPDLS 71 (151)
Q Consensus 18 rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L---------------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll 71 (151)
.|..-|.|...+.+.| ..|..| |+++ | +|+.+..|.++ .++++++|++|.|+
T Consensus 374 ~A~~aL~nLs~~~~~~--~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv 451 (584)
T 3l6x_A 374 AASGALRNLAVDARNK--ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLV 451 (584)
T ss_dssp HHHHHHHHHHTTCSCH--HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhCChhHH--HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHH
Confidence 3567788888887655 466776 7644 2 34445566666 99999999999999
Q ss_pred hhhccC--CHHHHHHHHHHHHHhc
Q 041564 72 LIFSRR--DEQVADTMLLCKAEAG 93 (151)
Q Consensus 72 ~lLs~~--D~KVVEAcLRcLr~~~ 93 (151)
++|.+. .++++++|...|+.+-
T Consensus 452 ~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 452 LINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCChHHHHHHHHHHHHHH
Confidence 999775 8999999999999774
No 29
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=94.99 E-value=0.012 Score=48.26 Aligned_cols=49 Identities=8% Similarity=-0.092 Sum_probs=43.6
Q ss_pred cccccccChHHHH-HHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhccc
Q 041564 47 PPSRFTCGFEAIQ-AMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGM 95 (151)
Q Consensus 47 VLGSFAcG~EaVk-aLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~~ 95 (151)
+|+.++.+.+..+ .+.++|++|.|+++|.++++.+.+.++.+|+.++.-
T Consensus 25 ~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~ 74 (457)
T 1xm9_A 25 YIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR 74 (457)
T ss_dssp HHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 7777887777755 999999999999999999999999999999988763
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.88 E-value=0.021 Score=50.35 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=60.3
Q ss_pred chhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC
Q 041564 16 SSRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR 77 (151)
Q Consensus 16 s~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~ 77 (151)
+..|...++| +..+...|..+++.| |.++ | +|+.++.+.++ -+.+.++|++|.|+.+|.++
T Consensus 210 r~~Aa~aL~~-Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~ 288 (780)
T 2z6g_A 210 ARCTSGTLHN-LSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 288 (780)
T ss_dssp HHHHHHHHHH-HHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC
T ss_pred HHHHHHHHHH-HhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC
Confidence 3456777888 444445566777777 5533 2 88888888777 77777999999999999999
Q ss_pred CHHHHHHHHHHHHHhcc
Q 041564 78 DEQVADTMLLCKAEAGG 94 (151)
Q Consensus 78 D~KVVEAcLRcLr~~~~ 94 (151)
+.++.+.++.||+.++.
T Consensus 289 ~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 289 NVKFLAITTDCLQILAY 305 (780)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999987765
No 31
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=94.85 E-value=0.019 Score=53.10 Aligned_cols=78 Identities=13% Similarity=-0.029 Sum_probs=62.6
Q ss_pred hHHhhhhhhhcccchhHhHHHH-hh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC-
Q 041564 18 RLNNRLKNQIIGSQTKKLSFLK-KL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR- 77 (151)
Q Consensus 18 rAlr~IKNqIIGNntKKlsfI~-lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~- 77 (151)
.|...|-|-.-|+..+...+++ .| |.++ | +++-+++|.++ .+.+.++|++|.|.++|..+
T Consensus 684 ~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d 763 (810)
T 3now_A 684 ACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPD 763 (810)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcc
Confidence 3567777888888888888888 66 6533 2 77778888777 99999999999999999655
Q ss_pred --CHHHHHHHHHHHHHhccc
Q 041564 78 --DEQVADTMLLCKAEAGGM 95 (151)
Q Consensus 78 --D~KVVEAcLRcLr~~~~~ 95 (151)
+.+++|.++.+|.-+-.+
T Consensus 764 ~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 764 DTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp STTHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhC
Confidence 899999999999876433
No 32
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=94.85 E-value=0.042 Score=43.14 Aligned_cols=78 Identities=14% Similarity=0.014 Sum_probs=60.3
Q ss_pred hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccC-
Q 041564 17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR- 77 (151)
Q Consensus 17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~- 77 (151)
..|+..+.|...++...+..+++.| |.++ | +|+.++.|.++ -+.+.+.|++|.|+.+|.++
T Consensus 119 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~ 198 (529)
T 1jdh_A 119 FYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198 (529)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 4567788888887766777787777 6533 2 67788888777 88889999999999999554
Q ss_pred CHHHHHHHHHHHHHhcc
Q 041564 78 DEQVADTMLLCKAEAGG 94 (151)
Q Consensus 78 D~KVVEAcLRcLr~~~~ 94 (151)
++.+.+++.++|+.++.
T Consensus 199 ~~~~~~~a~~~L~~l~~ 215 (529)
T 1jdh_A 199 YEKLLWTTSRVLKVLSV 215 (529)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 67788888888877763
No 33
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=94.64 E-value=0.023 Score=47.70 Aligned_cols=77 Identities=14% Similarity=0.061 Sum_probs=58.3
Q ss_pred hhHHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHH-HHHHHhcCChHHHHhhhccCC
Q 041564 17 SRLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRD 78 (151)
Q Consensus 17 ~rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D 78 (151)
..|...++|-... ..-+..+++.| |.++ | +|+.++.+.++ .+.+.+.|++|.|+.+|.+++
T Consensus 75 ~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~ 153 (644)
T 2z6h_A 75 RCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN 153 (644)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC
Confidence 3456677764433 34566677777 5533 2 78888887767 778889999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 041564 79 EQVADTMLLCKAEAGG 94 (151)
Q Consensus 79 ~KVVEAcLRcLr~~~~ 94 (151)
+++..++++||+..+.
T Consensus 154 ~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 154 VKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987764
No 34
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.53 E-value=0.016 Score=45.71 Aligned_cols=50 Identities=6% Similarity=-0.172 Sum_probs=43.4
Q ss_pred cccccccChHH-HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhcccc
Q 041564 47 PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGMH 96 (151)
Q Consensus 47 VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~~h 96 (151)
.|..++.+.+. -+.+.++|++|.|+++|.++++.+-+.++.+|+-++.-+
T Consensus 33 ~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 33 FIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp HHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 55667777777 778999999999999999999999999999999987643
No 35
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=93.44 E-value=0.085 Score=48.85 Aligned_cols=82 Identities=13% Similarity=0.070 Sum_probs=67.6
Q ss_pred HHhhhhhhhcccchhHhHHHHhh--hhhh--h-------------cccccccChHHHHHHHh-cCChHHHHhhhccCCHH
Q 041564 19 LNNRLKNQIIGSQTKKLSFLKKL--YRLI--L-------------PPSRFTCGFEAIQAMLD-AGLFPDLSLIFSRRDEQ 80 (151)
Q Consensus 19 Alr~IKNqIIGNntKKlsfI~lG--PrlI--L-------------VLGSFAcG~EaVkaLLd-aGvvP~Ll~lLs~~D~K 80 (151)
|+..+.|-.-++...+..+++.| |+++ | +|+.++.+.+..+.+++ +|++|.|+.+|.++|..
T Consensus 601 Al~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~ 680 (810)
T 3now_A 601 SLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEE 680 (810)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHH
Confidence 67788888888877777788888 7633 2 88999999888666666 89999999999999999
Q ss_pred HHHHHHHHHHHhcccccccc
Q 041564 81 VADTMLLCKAEAGGMHMRQS 100 (151)
Q Consensus 81 VVEAcLRcLr~~~~~h~~~~ 100 (151)
+-++++.+|.-++..+..|.
T Consensus 681 vq~~Aa~ALanLt~~s~~~~ 700 (810)
T 3now_A 681 TATACAGALAIITSVSVKCC 700 (810)
T ss_dssp HHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHH
Confidence 99999999999987655443
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=91.51 E-value=0.26 Score=43.39 Aligned_cols=77 Identities=9% Similarity=-0.025 Sum_probs=56.7
Q ss_pred hHHhhhhhhhcccchhHhHHHHhh--hhhh--h---------------cccccccChHH----HHHHHhcCChHHHHhhh
Q 041564 18 RLNNRLKNQIIGSQTKKLSFLKKL--YRLI--L---------------PPSRFTCGFEA----IQAMLDAGLFPDLSLIF 74 (151)
Q Consensus 18 rAlr~IKNqIIGNntKKlsfI~lG--PrlI--L---------------VLGSFAcG~Ea----VkaLLdaGvvP~Ll~lL 74 (151)
.|...|.|-.-++...+..+++.| |+++ | +||.++.+..+ -..+.++|++|.|+.+|
T Consensus 418 ~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL 497 (780)
T 2z6g_A 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLL 497 (780)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHh
Confidence 345566777777777777777776 5422 1 77878765433 24788999999999999
Q ss_pred ccCCH-HHHHHHHHHHHHhcc
Q 041564 75 SRRDE-QVADTMLLCKAEAGG 94 (151)
Q Consensus 75 s~~D~-KVVEAcLRcLr~~~~ 94 (151)
.+++. .+.++++.+|+.++.
T Consensus 498 ~~~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 498 HPPSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp STTCCHHHHHHHHHHHHHHHS
T ss_pred cCCChHHHHHHHHHHHHHHhc
Confidence 88864 999999999887653
No 37
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=75.30 E-value=0.75 Score=34.98 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=40.8
Q ss_pred hcccccccChH-H-HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhcccc
Q 041564 46 LPPSRFTCGFE-A-IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGMH 96 (151)
Q Consensus 46 LVLGSFAcG~E-a-VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~~h 96 (151)
.++|+++.|.+ + ++..+ ..++|.|+..|.+++++|-.+|+.+|...+...
T Consensus 388 ~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 388 MAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 38999998876 3 44444 678999999999999999999999998877554
No 38
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=73.30 E-value=0.73 Score=40.16 Aligned_cols=48 Identities=6% Similarity=0.051 Sum_probs=40.2
Q ss_pred cccccccChHH-HHHHHhcCChHHHHhhhccC---CHHHHHHHHHHHHHhcc
Q 041564 47 PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRR---DEQVADTMLLCKAEAGG 94 (151)
Q Consensus 47 VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~---D~KVVEAcLRcLr~~~~ 94 (151)
.|.+++.+.++ ++++.+.+.+|.|+..|.+. ...+..+++.||..++-
T Consensus 163 lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 163 LIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 56777777777 99999999999999998554 46899999999988753
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=60.39 E-value=6.3 Score=36.35 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=38.6
Q ss_pred cccccccChHHHHHHHhc-CChHHHHhhhccCCH----HHHHHHHHHHHHh
Q 041564 47 PPSRFTCGFEAIQAMLDA-GLFPDLSLIFSRRDE----QVADTMLLCKAEA 92 (151)
Q Consensus 47 VLGSFAcG~EaVkaLLda-GvvP~Ll~lLs~~D~----KVVEAcLRcLr~~ 92 (151)
.|..++.+-.++|+++.. |+||.|+.++..... .||+=|+..+.-+
T Consensus 189 LL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nL 239 (651)
T 3grl_A 189 LLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239 (651)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 888999999999999998 999999999966544 8888888776443
No 40
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=60.31 E-value=6.7 Score=34.14 Aligned_cols=47 Identities=2% Similarity=-0.105 Sum_probs=38.0
Q ss_pred cccccccChHHHHHHHhcCChHHHHh-hhccCCHHHHHHHHHHHHHhc
Q 041564 47 PPSRFTCGFEAIQAMLDAGLFPDLSL-IFSRRDEQVADTMLLCKAEAG 93 (151)
Q Consensus 47 VLGSFAcG~EaVkaLLdaGvvP~Ll~-lLs~~D~KVVEAcLRcLr~~~ 93 (151)
+|+.++.+.+.-+.++..|+|+.++. +|++++.-|+++|+.+||-++
T Consensus 57 al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 57 AIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp HHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 77777775555888888999987655 689999999999999998664
No 41
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=58.13 E-value=14 Score=31.20 Aligned_cols=73 Identities=8% Similarity=-0.082 Sum_probs=52.4
Q ss_pred chhHHhhhhhhhcccchhHhHHHHhh---------hhhhh------cccccccChHH-HHHHHhcCChHHHHhhhccCCH
Q 041564 16 SSRLNNRLKNQIIGSQTKKLSFLKKL---------YRLIL------PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDE 79 (151)
Q Consensus 16 s~rAlr~IKNqIIGNntKKlsfI~lG---------PrlIL------VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~ 79 (151)
+.||++++|=-+=|..--+.+|-+++ |+.++ ++|++ -+-+ ++.+. ..|++++.+.|+
T Consensus 92 al~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~~~~~~V~-----~~l~sLl~Skd~ 164 (265)
T 3b2a_A 92 TIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPLEDSKLVR-----TYINELVVSPDL 164 (265)
T ss_dssp HHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBSCCCHHHH-----HHHHHHHTCSSH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--CcccchHHHH-----HHHHHHHhCCCh
Confidence 57899999988888899999999987 22332 66766 3333 44443 356777777788
Q ss_pred HHHHHHHHHHHHhccc
Q 041564 80 QVADTMLLCKAEAGGM 95 (151)
Q Consensus 80 KVVEAcLRcLr~~~~~ 95 (151)
.+=.|++|++-+.+.+
T Consensus 165 ~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 165 YTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHHHhhcc
Confidence 8888888888877654
No 42
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=56.84 E-value=6.1 Score=36.96 Aligned_cols=46 Identities=7% Similarity=-0.068 Sum_probs=34.8
Q ss_pred cccccccChHH-HHHHHhcCChHHHHhhhccCCHH---HHHHHHHHHHHhc
Q 041564 47 PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQ---VADTMLLCKAEAG 93 (151)
Q Consensus 47 VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~K---VVEAcLRcLr~~~ 93 (151)
+|++++ +.++ -..+++.|++|.|+.+|.+.... +-+.|+++|.-..
T Consensus 480 aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLl 529 (778)
T 3opb_A 480 IIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRML 529 (778)
T ss_dssp HHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence 888886 4455 88899999999999999776443 5677888887655
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=55.30 E-value=4.3 Score=34.87 Aligned_cols=49 Identities=16% Similarity=0.130 Sum_probs=40.6
Q ss_pred hcccccccChHH-HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhccc
Q 041564 46 LPPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGM 95 (151)
Q Consensus 46 LVLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~~ 95 (151)
.++|+++.|..+ ++..+ .+++|.|+..|.++++.|..+++.++...+..
T Consensus 381 ~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 381 LVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 499999999887 55433 56799999999999999999999999876643
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=55.03 E-value=5.5 Score=34.23 Aligned_cols=47 Identities=9% Similarity=0.138 Sum_probs=41.4
Q ss_pred cccccccChHH-HHHHH-hcCChHHHHhhhccCCHHHHHHHHHHHHHhc
Q 041564 47 PPSRFTCGFEA-IQAML-DAGLFPDLSLIFSRRDEQVADTMLLCKAEAG 93 (151)
Q Consensus 47 VLGSFAcG~Ea-VkaLL-daGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~ 93 (151)
.+|+++.++++ ++..+ +.+.+|.++..+.+++..|.+++..++....
T Consensus 609 ~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~ 657 (852)
T 4fdd_A 609 LLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLT 657 (852)
T ss_dssp HHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 88899988877 87777 6899999999999999999999999998765
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=53.50 E-value=14 Score=25.73 Aligned_cols=27 Identities=15% Similarity=0.020 Sum_probs=12.4
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHh
Q 041564 66 LFPDLSLIFSRRDEQVADTMLLCKAEA 92 (151)
Q Consensus 66 vvP~Ll~lLs~~D~KVVEAcLRcLr~~ 92 (151)
.+|.|+.+|.++|+.|-.+++++|...
T Consensus 144 ~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 144 AVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 344444444444444444444444443
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=52.66 E-value=14 Score=25.40 Aligned_cols=29 Identities=17% Similarity=0.049 Sum_probs=22.6
Q ss_pred CChHHHHhhhccCCHHHHHHHHHHHHHhc
Q 041564 65 GLFPDLSLIFSRRDEQVADTMLLCKAEAG 93 (151)
Q Consensus 65 GvvP~Ll~lLs~~D~KVVEAcLRcLr~~~ 93 (151)
.++|.|+.+|.++|+.|-.+++++|...+
T Consensus 107 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 107 RAVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 46788888888888888888888887664
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.00 E-value=15 Score=25.53 Aligned_cols=29 Identities=17% Similarity=0.049 Sum_probs=21.3
Q ss_pred CChHHHHhhhccCCHHHHHHHHHHHHHhc
Q 041564 65 GLFPDLSLIFSRRDEQVADTMLLCKAEAG 93 (151)
Q Consensus 65 GvvP~Ll~lLs~~D~KVVEAcLRcLr~~~ 93 (151)
..+|.|+.+|.++|+.|-.+++++|...+
T Consensus 112 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 112 RAVEPLIKALKDEDWFVRIAAAFALGEIG 140 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 36777777777777777777777777664
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=51.42 E-value=25 Score=25.50 Aligned_cols=30 Identities=7% Similarity=-0.148 Sum_probs=24.6
Q ss_pred cCChHHHHhhhccCCHHHHHHHHHHHHHhc
Q 041564 64 AGLFPDLSLIFSRRDEQVADTMLLCKAEAG 93 (151)
Q Consensus 64 aGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~ 93 (151)
..++|.|+.+|.++|+.+-.+++.+|...+
T Consensus 53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 347888998888889998888888887665
No 49
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=51.31 E-value=17 Score=24.96 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=25.8
Q ss_pred cCChHHHHhhhccCCHHHHHHHHHHHHHhc
Q 041564 64 AGLFPDLSLIFSRRDEQVADTMLLCKAEAG 93 (151)
Q Consensus 64 aGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~ 93 (151)
...+|.|+.+|.++|+.|-.+++++|...+
T Consensus 137 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 137 ERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 567888999998899999999999998874
No 50
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=50.01 E-value=11 Score=31.32 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=39.2
Q ss_pred hcccccccChH-H-HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhccc
Q 041564 46 LPPSRFTCGFE-A-IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGM 95 (151)
Q Consensus 46 LVLGSFAcG~E-a-VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~~ 95 (151)
.++|+++.|.. + +...+ ..++|.|+..|.++++.|-++|+.++...+..
T Consensus 388 ~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 388 MAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 38999998875 4 65544 45899999999999999999999998866543
No 51
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=48.29 E-value=11 Score=31.24 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=39.2
Q ss_pred hcccccccChH-H-HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhccc
Q 041564 46 LPPSRFTCGFE-A-IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGM 95 (151)
Q Consensus 46 LVLGSFAcG~E-a-VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~~ 95 (151)
..+|+++.|.. + +...++ .++|.|+..+.++++.|-++++.++...+.+
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 391 MAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 48899998864 4 666665 4899999999999999999999888766543
No 52
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=47.85 E-value=10 Score=35.52 Aligned_cols=37 Identities=8% Similarity=-0.023 Sum_probs=32.9
Q ss_pred HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhcc
Q 041564 58 IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGG 94 (151)
Q Consensus 58 VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~ 94 (151)
.+.|+++|++|.|+.++.++++.+-|.++++|--++.
T Consensus 450 ~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~ 486 (778)
T 3opb_A 450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR 486 (778)
T ss_dssp HHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4688999999999999999999999999998877763
No 53
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=45.73 E-value=15 Score=24.33 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=24.8
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHhc
Q 041564 66 LFPDLSLIFSRRDEQVADTMLLCKAEAG 93 (151)
Q Consensus 66 vvP~Ll~lLs~~D~KVVEAcLRcLr~~~ 93 (151)
++|.|+..|.++|+.|-.+++.+|...+
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIG 101 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 5788899999999999999999998775
No 54
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=41.12 E-value=31 Score=25.04 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=23.8
Q ss_pred cCChHHHHhhhccCCHHHHHHHHHHHHHhc
Q 041564 64 AGLFPDLSLIFSRRDEQVADTMLLCKAEAG 93 (151)
Q Consensus 64 aGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~ 93 (151)
..++|.|+.+|.++|+.|-.+++.+|...+
T Consensus 158 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 158 KATIPLLINLLKDPNGDVRNWAAFAININK 187 (280)
T ss_dssp -CCHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 357888888888888888888888887654
No 55
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=39.39 E-value=25 Score=23.24 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=23.6
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHhc
Q 041564 67 FPDLSLIFSRRDEQVADTMLLCKAEAG 93 (151)
Q Consensus 67 vP~Ll~lLs~~D~KVVEAcLRcLr~~~ 93 (151)
+|.|+..|.++|+.|-.+++++|...+
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~ 70 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQ 70 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence 689999999999999999999886654
No 56
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=32.53 E-value=26 Score=26.21 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHHhccc
Q 041564 77 RDEQVADTMLLCKAEAGGM 95 (151)
Q Consensus 77 ~D~KVVEAcLRcLr~~~~~ 95 (151)
++|++++|+||+-|-+.-|
T Consensus 43 P~P~ii~aaLrAcRRvND~ 61 (109)
T 1v54_E 43 PEPKIIDAALRACRRLNDF 61 (109)
T ss_dssp CCHHHHHHHHHHHHHTTCH
T ss_pred CCcHHHHHHHHHHHHhhhH
Confidence 5999999999999887654
No 57
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=29.99 E-value=31 Score=28.93 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=26.6
Q ss_pred cCChHHHHhhhccCCHHHHHHHHHHHHHhcc
Q 041564 64 AGLFPDLSLIFSRRDEQVADTMLLCKAEAGG 94 (151)
Q Consensus 64 aGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~ 94 (151)
.+.+|.|..+|.++|+.|+.+|+.+|.+...
T Consensus 159 ~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 159 QGFLDSLRDLIADSNPMVVANAVAALSEISE 189 (591)
T ss_dssp HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 3677899999999999999999999988653
No 58
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=29.55 E-value=56 Score=23.48 Aligned_cols=47 Identities=11% Similarity=0.100 Sum_probs=35.1
Q ss_pred cccccccChHH-HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhcc
Q 041564 47 PPSRFTCGFEA-IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGG 94 (151)
Q Consensus 47 VLGSFAcG~Ea-VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~ 94 (151)
++|.||.+... +... -..++|.|+..|.++++.|-+++..+|.....
T Consensus 80 ~l~~la~~l~~~~~~~-~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 80 CLALLAKGLAKRFSNY-ASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp HHHHHHHHHGGGGHHH-HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 67777755544 4332 23378999999999999999999999997643
No 59
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=28.31 E-value=57 Score=23.46 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=28.4
Q ss_pred HHHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhc
Q 041564 58 IQAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAG 93 (151)
Q Consensus 58 VkaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~ 93 (151)
....+. ..+|.|+.+|.+++++|-+++..|+....
T Consensus 170 ~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 170 NKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp CHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 334443 57899999999999999999999997755
No 60
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=27.84 E-value=43 Score=25.27 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=25.3
Q ss_pred cCChHHHHhhhccC--CHHHHHHHHHHHHHhc
Q 041564 64 AGLFPDLSLIFSRR--DEQVADTMLLCKAEAG 93 (151)
Q Consensus 64 aGvvP~Ll~lLs~~--D~KVVEAcLRcLr~~~ 93 (151)
.+.+|.|+..+.++ |+.+.++++.+|....
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 35788888888888 9999999999998764
No 61
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A
Probab=25.65 E-value=28 Score=28.27 Aligned_cols=52 Identities=27% Similarity=0.335 Sum_probs=38.0
Q ss_pred cccccccChHH-H-HHHHhcCChHHHHhhhccCCHHHHHHHHHHHHHhcccccccccc
Q 041564 47 PPSRFTCGFEA-I-QAMLDAGLFPDLSLIFSRRDEQVADTMLLCKAEAGGMHMRQSSN 102 (151)
Q Consensus 47 VLGSFAcG~Ea-V-kaLLdaGvvP~Ll~lLs~~D~KVVEAcLRcLr~~~~~h~~~~~~ 102 (151)
..|+|| +. + +-++|.=.+..+-.+..++++.+.+++.+.++|.+ ||+|++..
T Consensus 87 P~gdwa---~ti~r~~l~d~~~~~~~~~L~~ss~~plA~ia~K~~kEe~-yH~~h~~~ 140 (249)
T 1otk_A 87 PNGNFA---DTIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEAR-YHLRFSRG 140 (249)
T ss_dssp CCCSHH---HHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CCCCHH---HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 777776 33 3 44555555555555557789999999999999986 89998865
No 62
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=23.15 E-value=62 Score=24.10 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=21.6
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHh
Q 041564 67 FPDLSLIFSRRDEQVADTMLLCKAEA 92 (151)
Q Consensus 67 vP~Ll~lLs~~D~KVVEAcLRcLr~~ 92 (151)
++.++..+.+.++|+..+|+.+|..+
T Consensus 141 ~e~l~~~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 141 VELVIPFFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp HHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 56677778999999999999888754
Done!