BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041566
         (687 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 131/260 (50%), Gaps = 20/260 (7%)

Query: 292 RGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGN 351
           R + ++Y  R      KAGN+++A+  + +K  E V +FDAD  P+ DFL +T+ YF  +
Sbjct: 210 RELGVVYSTRERNEHAKAGNMSAAL--ERLKG-ELVVVFDADHVPSRDFLARTVGYFVED 266

Query: 352 DDLALVQTRWSFVNKDE-----NLLTRLQNINLSFHFEVEQQXXXXXXXXXXXXXTAGVW 406
            DL LVQT   F+N D       L  R    N  F+ ++ +              +A V 
Sbjct: 267 PDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCG--SAAVL 324

Query: 407 RIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWH 466
           R +AL+E GG+   T  ED + A+  H  GWK +Y++        PE++ ++ +Q+ RW 
Sbjct: 325 RRRALDEAGGFAGETITEDAETALEIHSRGWKSLYIDRAMIAGLQPETFASFIQQRGRWA 384

Query: 467 SGPMQLFRMCFIDIIRSKVSWAKK----ANLIFLFFLLRKLVLPFYSFTLFCIILPLTMF 522
           +G MQ+  +    + R  +  A++     ++ F FF L +++  F    L  +   + +F
Sbjct: 385 TGMMQML-LLKNPLFRRGLGIAQRLCYLNSMSFWFFPLVRMM--FLVAPLIYLFFGIEIF 441

Query: 523 IPEAELPAWVVSYVPGFMSI 542
           +   E    V++Y+PG++++
Sbjct: 442 VATFE---EVLAYMPGYLAV 458


>pdb|4ACQ|A Chain A, Alpha-2 Macroglobulin
 pdb|4ACQ|B Chain B, Alpha-2 Macroglobulin
 pdb|4ACQ|C Chain C, Alpha-2 Macroglobulin
 pdb|4ACQ|D Chain D, Alpha-2 Macroglobulin
          Length = 1451

 Score = 29.6 bits (65), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 336 PTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFH 382
           PT +F K+T    K  D L  VQT  S     + +  R+ +++ +FH
Sbjct: 87  PTQEFKKRTTVMVKNEDSLVFVQTDKSIYKPGQTVKFRVVSMDENFH 133


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.440 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,864,979
Number of Sequences: 62578
Number of extensions: 643953
Number of successful extensions: 1630
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1626
Number of HSP's gapped (non-prelim): 2
length of query: 687
length of database: 14,973,337
effective HSP length: 105
effective length of query: 582
effective length of database: 8,402,647
effective search space: 4890340554
effective search space used: 4890340554
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)