Query 041566
Match_columns 687
No_of_seqs 573 out of 3958
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041566.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041566hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11498 bcsA cellulose syntha 100.0 6E-46 1.3E-50 430.9 51.4 419 145-595 182-613 (852)
2 TIGR03030 CelA cellulose synth 100.0 4.7E-45 1E-49 426.4 51.2 421 146-595 54-502 (713)
3 PRK11204 N-glycosyltransferase 100.0 8.6E-40 1.9E-44 362.7 45.5 244 229-483 50-293 (420)
4 PRK14583 hmsR N-glycosyltransf 100.0 8.5E-39 1.8E-43 356.6 46.0 242 230-482 72-313 (444)
5 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 6.3E-37 1.4E-41 340.8 40.9 253 229-489 45-306 (439)
6 PRK05454 glucosyltransferase M 100.0 6.2E-36 1.3E-40 343.6 49.2 271 229-509 120-410 (691)
7 cd06437 CESA_CaSu_A2 Cellulose 100.0 3.9E-37 8.5E-42 313.5 24.7 232 233-469 1-232 (232)
8 PRK14716 bacteriophage N4 adso 100.0 2.2E-33 4.7E-38 312.4 39.8 282 182-476 19-331 (504)
9 COG1215 Glycosyltransferases, 100.0 5.5E-34 1.2E-38 317.5 35.0 236 232-476 53-291 (439)
10 cd06427 CESA_like_2 CESA_like_ 100.0 5.1E-35 1.1E-39 300.0 24.1 237 233-477 1-238 (241)
11 PLN02893 Cellulose synthase-li 100.0 1.6E-33 3.5E-38 317.4 34.9 335 116-495 21-522 (734)
12 cd04191 Glucan_BSP_ModH Glucan 100.0 7.8E-34 1.7E-38 292.6 25.1 233 235-471 1-253 (254)
13 TIGR03472 HpnI hopanoid biosyn 100.0 1.5E-31 3.2E-36 292.0 34.4 232 230-468 38-271 (373)
14 PRK11234 nfrB bacteriophage N4 100.0 4.1E-31 8.9E-36 305.3 36.6 281 184-477 15-337 (727)
15 cd06421 CESA_CelA_like CESA_Ce 100.0 3.4E-32 7.3E-37 276.3 22.8 231 233-472 1-233 (234)
16 cd06435 CESA_NdvC_like NdvC_li 100.0 6.1E-32 1.3E-36 275.5 23.5 233 236-476 1-235 (236)
17 PF13641 Glyco_tranf_2_3: Glyc 100.0 1.7E-33 3.6E-38 285.4 10.1 228 233-468 1-228 (228)
18 cd04190 Chitin_synth_C C-termi 100.0 1.9E-32 4.1E-37 281.8 16.4 205 237-471 1-243 (244)
19 PLN02189 cellulose synthase 100.0 6.7E-30 1.5E-34 293.5 32.4 260 230-495 328-816 (1040)
20 PLN02195 cellulose synthase A 100.0 6.7E-30 1.5E-34 292.1 31.8 261 229-495 248-751 (977)
21 cd02520 Glucosylceramide_synth 100.0 3.9E-31 8.5E-36 262.6 18.7 193 233-468 1-195 (196)
22 PLN02248 cellulose synthase-li 100.0 2.1E-29 4.5E-34 290.0 33.7 197 294-495 585-911 (1135)
23 PF03142 Chitin_synth_2: Chiti 100.0 2.1E-29 4.6E-34 278.2 30.1 361 229-595 21-498 (527)
24 PLN02638 cellulose synthase A 100.0 7.7E-30 1.7E-34 293.9 26.8 261 229-495 345-854 (1079)
25 PRK15489 nfrB bacteriophage N4 100.0 1.8E-28 3.9E-33 279.9 37.7 284 181-475 20-343 (703)
26 PLN02400 cellulose synthase 100.0 9.3E-29 2E-33 285.1 29.4 261 229-495 352-859 (1085)
27 PLN02190 cellulose synthase-li 100.0 1.6E-28 3.6E-33 275.4 29.5 256 231-495 91-536 (756)
28 PLN02436 cellulose synthase A 100.0 1.7E-28 3.7E-33 281.7 29.9 260 230-495 362-870 (1094)
29 PLN02915 cellulose synthase A 100.0 2.8E-28 6.1E-33 280.3 30.7 261 230-495 284-818 (1044)
30 cd06434 GT2_HAS Hyaluronan syn 100.0 4.8E-29 1E-33 253.6 18.3 223 234-471 1-234 (235)
31 cd04192 GT_2_like_e Subfamily 100.0 2.7E-28 5.8E-33 246.4 22.2 223 237-468 1-229 (229)
32 cd06439 CESA_like_1 CESA_like_ 100.0 3.2E-28 7E-33 250.4 20.7 226 229-471 25-250 (251)
33 TIGR03469 HonB hopene-associat 100.0 1.5E-26 3.3E-31 253.4 34.1 231 229-467 36-280 (384)
34 cd02525 Succinoglycan_BP_ExoA 99.9 1.4E-25 3E-30 229.4 23.0 232 234-477 1-235 (249)
35 PF03552 Cellulose_synt: Cellu 99.9 5E-25 1.1E-29 247.0 12.7 285 294-594 166-607 (720)
36 cd06438 EpsO_like EpsO protein 99.9 2.5E-24 5.3E-29 211.3 16.0 181 237-428 1-183 (183)
37 COG2943 MdoH Membrane glycosyl 99.9 1E-20 2.2E-25 200.8 38.2 270 232-511 143-432 (736)
38 cd06436 GlcNAc-1-P_transferase 99.9 3.5E-23 7.6E-28 204.8 17.6 181 237-425 1-191 (191)
39 cd02510 pp-GalNAc-T pp-GalNAc- 99.9 9.9E-23 2.1E-27 215.9 20.4 210 236-452 1-227 (299)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.9 2.8E-22 6.1E-27 198.8 18.8 194 233-446 1-197 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.9 2.6E-22 5.6E-27 199.1 16.7 195 236-447 1-198 (201)
42 PF13632 Glyco_trans_2_3: Glyc 99.9 2.2E-21 4.7E-26 191.8 18.4 142 326-469 1-143 (193)
43 PLN02726 dolichyl-phosphate be 99.9 1.2E-20 2.6E-25 193.8 23.1 212 230-453 6-221 (243)
44 cd06913 beta3GnTL1_like Beta 1 99.9 2.5E-20 5.3E-25 188.1 21.9 203 237-448 1-207 (219)
45 cd06433 GT_2_WfgS_like WfgS an 99.9 9.2E-21 2E-25 186.7 17.9 191 236-448 1-192 (202)
46 cd04196 GT_2_like_d Subfamily 99.9 2.2E-20 4.7E-25 186.5 19.6 196 236-446 1-199 (214)
47 cd04185 GT_2_like_b Subfamily 99.8 2.7E-20 5.9E-25 185.0 17.6 176 237-455 1-178 (202)
48 cd06420 GT2_Chondriotin_Pol_N 99.8 6.2E-20 1.4E-24 178.9 19.8 176 237-449 1-180 (182)
49 cd02526 GT2_RfbF_like RfbF is 99.8 1.7E-20 3.8E-25 190.9 16.0 202 237-454 1-208 (237)
50 cd04186 GT_2_like_c Subfamily 99.8 5.1E-20 1.1E-24 175.7 17.7 163 237-450 1-165 (166)
51 cd06442 DPM1_like DPM1_like re 99.8 1.9E-19 4.1E-24 181.5 20.6 202 237-451 1-204 (224)
52 cd06423 CESA_like CESA_like is 99.8 2.6E-20 5.6E-25 177.8 11.7 180 237-425 1-180 (180)
53 cd02522 GT_2_like_a GT_2_like_ 99.8 4.2E-19 9.1E-24 178.6 20.4 184 235-448 1-184 (221)
54 PRK10018 putative glycosyl tra 99.8 6.7E-19 1.5E-23 184.1 22.6 226 231-477 3-232 (279)
55 PRK10073 putative glycosyl tra 99.8 2.4E-19 5.2E-24 192.2 18.4 200 232-446 5-212 (328)
56 KOG2571 Chitin synthase/hyalur 99.8 5.2E-18 1.1E-22 193.5 22.0 149 322-472 439-600 (862)
57 cd04188 DPG_synthase DPG_synth 99.8 4.6E-18 1E-22 170.5 18.9 202 237-453 1-209 (211)
58 PRK10063 putative glycosyl tra 99.8 6.6E-18 1.4E-22 174.1 20.2 192 233-448 1-194 (248)
59 PTZ00260 dolichyl-phosphate be 99.8 9.2E-17 2E-21 172.5 28.1 209 229-446 66-288 (333)
60 COG1216 Predicted glycosyltran 99.8 1.7E-17 3.7E-22 176.4 18.5 213 232-454 2-224 (305)
61 PF13506 Glyco_transf_21: Glyc 99.8 9.6E-18 2.1E-22 163.4 15.0 163 296-467 6-175 (175)
62 TIGR01556 rhamnosyltran L-rham 99.7 4.6E-17 1E-21 170.9 15.8 200 241-454 2-205 (281)
63 cd04179 DPM_DPG-synthase_like 99.7 4.4E-17 9.6E-22 159.0 14.3 180 237-431 1-184 (185)
64 PF00535 Glycos_transf_2: Glyc 99.7 6.5E-18 1.4E-22 160.5 7.6 169 236-415 1-169 (169)
65 PF10111 Glyco_tranf_2_2: Glyc 99.7 5.6E-16 1.2E-20 162.8 21.1 204 236-450 1-222 (281)
66 PRK13915 putative glucosyl-3-p 99.7 2.7E-16 5.9E-21 166.7 17.1 198 231-443 29-238 (306)
67 KOG2547 Ceramide glucosyltrans 99.7 1.2E-16 2.6E-21 164.4 10.9 231 230-467 82-314 (431)
68 PRK10714 undecaprenyl phosphat 99.7 4.1E-14 8.9E-19 151.6 29.7 192 232-445 5-199 (325)
69 cd04187 DPM1_like_bac Bacteria 99.7 1.3E-15 2.9E-20 148.7 16.2 177 237-430 1-179 (181)
70 cd00761 Glyco_tranf_GTA_type G 99.6 3.6E-14 7.7E-19 131.8 15.2 153 237-440 1-155 (156)
71 KOG2978 Dolichol-phosphate man 99.6 6.1E-14 1.3E-18 131.9 16.1 203 233-447 3-210 (238)
72 cd02511 Beta4Glucosyltransfera 99.4 2.1E-12 4.6E-17 131.5 14.7 106 234-358 1-106 (229)
73 COG0463 WcaA Glycosyltransfera 99.3 1.2E-11 2.5E-16 120.0 12.2 106 232-348 2-107 (291)
74 KOG2977 Glycosyltransferase [G 99.1 1.3E-08 2.7E-13 102.6 19.9 209 234-454 68-291 (323)
75 KOG3736 Polypeptide N-acetylga 98.9 1.6E-09 3.4E-14 121.2 6.4 212 228-449 137-368 (578)
76 KOG3738 Predicted polypeptide 98.8 9.7E-09 2.1E-13 107.1 8.0 227 229-467 120-373 (559)
77 cd02514 GT13_GLCNAC-TI GT13_GL 98.8 4.8E-08 1E-12 103.9 13.0 176 235-439 2-198 (334)
78 KOG3737 Predicted polypeptide 98.7 3.1E-08 6.8E-13 103.0 9.4 209 228-446 150-383 (603)
79 PF13712 Glyco_tranf_2_5: Glyc 98.6 4.3E-07 9.3E-12 91.7 14.2 181 235-456 1-203 (217)
80 cd00899 b4GalT Beta-4-Galactos 97.9 0.00012 2.6E-09 73.2 11.2 151 234-446 3-161 (219)
81 PF03071 GNT-I: GNT-I family; 97.5 0.00084 1.8E-08 73.5 12.3 185 230-445 90-298 (434)
82 PF03452 Anp1: Anp1; InterPro 97.4 0.0021 4.6E-08 66.2 13.0 119 229-347 21-167 (269)
83 PF13704 Glyco_tranf_2_4: Glyc 97.3 0.0014 3E-08 57.1 8.7 83 242-336 1-84 (97)
84 KOG3588 Chondroitin synthase 1 97.2 0.0091 2E-07 62.8 14.7 203 230-447 226-434 (494)
85 PF09488 Osmo_MPGsynth: Mannos 97.1 0.0026 5.7E-08 67.0 9.9 125 233-364 50-204 (381)
86 COG4092 Predicted glycosyltran 97.1 0.033 7.2E-07 56.3 17.1 194 233-435 2-216 (346)
87 TIGR02460 osmo_MPGsynth mannos 96.8 0.01 2.2E-07 62.3 10.6 100 232-338 49-174 (381)
88 PRK14503 mannosyl-3-phosphogly 96.7 0.01 2.2E-07 62.7 10.5 100 232-338 50-175 (393)
89 PF01644 Chitin_synth_1: Chiti 96.3 0.03 6.5E-07 53.3 9.6 107 241-348 1-163 (163)
90 PF05679 CHGN: Chondroitin N-a 96.2 0.24 5.3E-06 56.4 18.4 202 232-446 246-463 (499)
91 PRK14502 bifunctional mannosyl 95.8 0.051 1.1E-06 62.9 10.8 102 232-340 54-181 (694)
92 PF11316 Rhamno_transf: Putati 95.2 0.15 3.2E-06 52.1 10.6 94 249-349 45-140 (234)
93 PF02709 Glyco_transf_7C: N-te 95.1 0.022 4.7E-07 47.8 3.5 47 399-445 19-68 (78)
94 PF11735 CAP59_mtransfer: Cryp 95.0 0.98 2.1E-05 46.3 15.9 123 235-359 2-146 (241)
95 PF03214 RGP: Reversibly glyco 94.0 0.05 1.1E-06 57.1 3.7 99 234-350 9-118 (348)
96 KOG3916 UDP-Gal:glucosylcerami 93.1 0.62 1.3E-05 49.2 10.0 179 233-473 151-348 (372)
97 PF11397 GlcNAc: Glycosyltrans 92.9 0.83 1.8E-05 49.4 11.0 211 234-450 1-262 (343)
98 KOG1476 Beta-1,3-glucuronyltra 92.2 1.5 3.3E-05 45.9 11.2 105 232-348 86-205 (330)
99 PLN02458 transferase, transfer 92.0 2.2 4.8E-05 45.1 12.3 104 231-344 110-223 (346)
100 cd00218 GlcAT-I Beta1,3-glucur 92.0 1.9 4.1E-05 43.4 11.5 100 233-343 1-115 (223)
101 KOG1413 N-acetylglucosaminyltr 91.7 1.6 3.4E-05 46.4 10.8 176 230-426 64-257 (411)
102 PF06306 CgtA: Beta-1,4-N-acet 91.7 0.6 1.3E-05 48.9 7.7 103 234-344 88-196 (347)
103 PLN02917 CMP-KDO synthetase 91.5 3.8 8.3E-05 43.4 13.9 184 245-443 72-266 (293)
104 TIGR03584 PseF pseudaminic aci 91.1 3.4 7.5E-05 41.8 12.6 95 243-350 22-122 (222)
105 TIGR00466 kdsB 3-deoxy-D-manno 90.7 4.9 0.00011 41.1 13.5 182 244-443 23-222 (238)
106 PF01762 Galactosyl_T: Galacto 90.4 1.5 3.2E-05 43.4 9.0 182 246-440 4-192 (195)
107 PF09258 Glyco_transf_64: Glyc 89.0 1.3 2.9E-05 45.6 7.7 103 236-353 2-105 (247)
108 PF02364 Glucan_synthase: 1,3- 87.6 3.1 6.8E-05 49.3 10.2 182 307-494 275-482 (817)
109 KOG4179 Lysyl hydrolase/glycos 87.0 1.3 2.8E-05 47.8 6.0 111 233-347 3-134 (568)
110 cd04182 GT_2_like_f GT_2_like_ 86.3 7.8 0.00017 37.1 11.0 94 243-350 24-118 (186)
111 TIGR03202 pucB xanthine dehydr 85.4 8.8 0.00019 37.4 11.0 102 243-353 24-126 (190)
112 PF02434 Fringe: Fringe-like; 85.1 3.2 6.9E-05 43.0 7.9 110 321-444 84-204 (252)
113 PF05045 RgpF: Rhamnan synthes 84.6 39 0.00085 38.6 17.0 122 231-361 263-406 (498)
114 TIGR03310 matur_ygfJ molybdenu 84.3 12 0.00026 36.1 11.3 97 243-353 23-120 (188)
115 PF12804 NTP_transf_3: MobA-li 82.5 10 0.00023 35.5 9.8 102 239-358 19-122 (160)
116 cd02540 GT2_GlmU_N_bac N-termi 79.4 20 0.00042 35.8 11.2 96 239-350 21-117 (229)
117 PF04666 Glyco_transf_54: N-Ac 79.0 11 0.00023 40.1 9.1 114 232-350 51-196 (297)
118 cd06422 NTP_transferase_like_1 78.1 21 0.00045 35.6 10.8 96 239-347 25-120 (221)
119 cd06431 GT8_LARGE_C LARGE cata 77.4 35 0.00076 35.8 12.6 119 234-358 2-133 (280)
120 PRK13385 2-C-methyl-D-erythrit 77.0 18 0.0004 36.4 10.1 99 243-352 28-127 (230)
121 cd06915 NTP_transferase_WcbM_l 76.8 27 0.00058 34.5 11.1 93 245-350 29-121 (223)
122 cd04181 NTP_transferase NTP_tr 76.7 22 0.00049 34.9 10.6 92 245-349 29-120 (217)
123 cd02513 CMP-NeuAc_Synthase CMP 74.9 35 0.00077 33.8 11.5 96 243-350 24-125 (223)
124 PLN03133 beta-1,3-galactosyltr 74.0 1.2E+02 0.0025 35.7 16.4 192 233-445 385-595 (636)
125 cd00505 Glyco_transf_8 Members 72.9 30 0.00064 35.4 10.5 114 237-357 3-128 (246)
126 cd02517 CMP-KDO-Synthetase CMP 71.0 38 0.00083 34.1 10.8 97 243-354 24-121 (239)
127 PF11051 Mannosyl_trans3: Mann 70.7 31 0.00067 36.1 10.1 23 321-343 88-112 (271)
128 cd02503 MobA MobA catalyzes th 70.5 41 0.0009 32.2 10.4 85 243-348 24-109 (181)
129 PLN03180 reversibly glycosylat 70.4 8.2 0.00018 41.1 5.6 35 312-349 85-126 (346)
130 PF13733 Glyco_transf_7N: N-te 70.4 6.4 0.00014 36.5 4.3 76 233-339 47-127 (136)
131 PRK14353 glmU bifunctional N-a 70.0 37 0.0008 37.9 11.3 104 239-356 28-132 (446)
132 TIGR01173 glmU UDP-N-acetylglu 69.9 39 0.00084 37.7 11.5 103 239-359 23-126 (451)
133 PRK13368 3-deoxy-manno-octulos 69.2 49 0.0011 33.3 11.1 92 244-352 26-118 (238)
134 PRK00317 mobA molybdopterin-gu 68.4 40 0.00087 32.8 10.0 88 243-350 28-116 (193)
135 cd02516 CDP-ME_synthetase CDP- 67.8 41 0.00088 33.3 10.0 99 243-352 26-125 (218)
136 PRK05450 3-deoxy-manno-octulos 67.4 68 0.0015 32.4 11.8 93 243-350 25-118 (245)
137 KOG2287 Galactosyltransferases 66.5 1.3E+02 0.0029 32.6 14.2 200 232-444 94-303 (349)
138 PLN03153 hypothetical protein; 66.0 18 0.00039 40.9 7.4 100 321-444 208-314 (537)
139 cd02518 GT2_SpsF SpsF is a gly 65.6 71 0.0015 32.1 11.4 91 243-350 22-115 (233)
140 COG1212 KdsB CMP-2-keto-3-deox 65.4 1.3E+02 0.0029 30.5 12.6 179 246-442 29-219 (247)
141 cd06430 GT8_like_2 GT8_like_2 65.3 1.2E+02 0.0025 32.4 13.0 120 234-359 2-133 (304)
142 PRK14352 glmU bifunctional N-a 65.0 71 0.0015 36.2 12.4 100 238-350 26-126 (482)
143 cd04194 GT8_A4GalT_like A4GalT 64.4 32 0.00069 35.1 8.6 90 246-338 13-110 (248)
144 PF03213 Pox_P35: Poxvirus P35 64.3 1.2E+02 0.0026 32.2 12.5 45 321-366 116-161 (325)
145 TIGR03552 F420_cofC 2-phospho- 63.9 79 0.0017 30.7 11.1 87 246-350 31-118 (195)
146 cd04189 G1P_TT_long G1P_TT_lon 62.5 86 0.0019 31.4 11.4 105 239-357 26-131 (236)
147 cd06425 M1P_guanylylT_B_like_N 60.8 54 0.0012 32.9 9.5 100 239-350 26-126 (233)
148 PLN03193 beta-1,3-galactosyltr 59.5 2.4E+02 0.0051 31.3 14.3 157 276-449 192-355 (408)
149 cd02523 PC_cytidylyltransferas 58.6 40 0.00088 33.7 8.1 92 239-346 24-115 (229)
150 cd04183 GT2_BcE_like GT2_BcbE_ 58.5 86 0.0019 31.3 10.5 109 239-358 24-132 (231)
151 PF05060 MGAT2: N-acetylglucos 58.5 56 0.0012 35.5 9.2 51 233-284 31-81 (356)
152 PF03360 Glyco_transf_43: Glyc 58.1 21 0.00045 35.8 5.6 73 264-343 10-97 (207)
153 TIGR02665 molyb_mobA molybdopt 58.0 78 0.0017 30.4 9.7 90 243-350 25-115 (186)
154 PF13896 Glyco_transf_49: Glyc 57.8 1.2E+02 0.0026 32.5 11.8 51 310-363 117-170 (317)
155 PRK14355 glmU bifunctional N-a 56.6 1E+02 0.0022 34.7 11.6 98 238-350 25-123 (459)
156 COG1213 Predicted sugar nucleo 55.4 18 0.00038 36.8 4.6 101 232-348 21-121 (239)
157 COG1209 RfbA dTDP-glucose pyro 55.1 1E+02 0.0022 32.2 10.0 195 239-456 26-229 (286)
158 PRK00155 ispD 2-C-methyl-D-ery 54.8 1.2E+02 0.0025 30.4 10.7 95 243-351 29-124 (227)
159 cd06428 M1P_guanylylT_A_like_N 54.0 1.1E+02 0.0025 31.1 10.7 103 238-350 25-128 (257)
160 PRK15171 lipopolysaccharide 1, 53.3 79 0.0017 34.1 9.6 109 233-345 24-141 (334)
161 TIGR01207 rmlA glucose-1-phosp 51.5 89 0.0019 32.9 9.5 100 238-349 24-123 (286)
162 PRK15480 glucose-1-phosphate t 50.7 1E+02 0.0022 32.5 9.8 99 238-349 28-127 (292)
163 cd06432 GT8_HUGT1_C_like The C 50.5 2.2E+02 0.0048 29.2 12.0 98 245-346 13-117 (248)
164 TIGR00453 ispD 2-C-methyl-D-er 49.5 1.5E+02 0.0033 29.2 10.5 42 308-351 77-119 (217)
165 PF01697 Glyco_transf_92: Glyc 48.7 63 0.0014 33.5 7.9 117 235-359 3-145 (285)
166 cd02508 ADP_Glucose_PP ADP-glu 48.1 1.4E+02 0.003 29.2 9.8 111 232-350 19-136 (200)
167 PF09837 DUF2064: Uncharacteri 46.2 1.4E+02 0.0031 27.1 8.7 62 291-360 32-94 (122)
168 cd06426 NTP_transferase_like_2 45.6 1.4E+02 0.003 29.4 9.6 97 239-350 24-120 (220)
169 COG0659 SUL1 Sulfate permease 45.4 5.5E+02 0.012 29.9 20.0 81 86-171 286-370 (554)
170 PRK02726 molybdopterin-guanine 45.3 1.6E+02 0.0034 29.0 9.7 89 243-350 31-120 (200)
171 TIGR01105 galF UTP-glucose-1-p 45.3 2.4E+02 0.0051 29.9 11.6 107 232-349 24-155 (297)
172 PRK14358 glmU bifunctional N-a 45.2 1.8E+02 0.0039 33.1 11.4 97 239-351 30-127 (481)
173 PF00483 NTP_transferase: Nucl 44.7 99 0.0021 31.1 8.4 103 239-350 25-128 (248)
174 PF05212 DUF707: Protein of un 44.1 1.4E+02 0.003 31.4 9.1 208 232-456 40-257 (294)
175 TIGR00454 conserved hypothetic 42.3 2.3E+02 0.0049 27.6 10.2 90 244-350 26-116 (183)
176 PF04724 Glyco_transf_17: Glyc 42.2 4.3E+02 0.0094 28.8 13.1 122 234-361 80-215 (356)
177 PF01501 Glyco_transf_8: Glyco 41.0 43 0.00093 33.5 5.1 44 241-284 5-50 (250)
178 PRK14356 glmU bifunctional N-a 40.3 2.3E+02 0.0049 31.7 11.2 99 244-357 32-131 (456)
179 PHA02688 ORF059 IMV protein VP 39.9 3.3E+02 0.0071 29.0 11.1 45 321-366 114-159 (323)
180 PRK14360 glmU bifunctional N-a 39.7 2.2E+02 0.0047 31.8 10.9 98 239-351 24-122 (450)
181 KOG3917 Beta-1,4-galactosyltra 38.8 1.5E+02 0.0033 29.9 8.0 43 399-441 181-226 (310)
182 PRK14354 glmU bifunctional N-a 38.7 3.1E+02 0.0068 30.6 12.0 95 239-350 25-120 (458)
183 COG2068 Uncharacterized MobA-r 38.0 3.9E+02 0.0085 26.6 10.8 95 244-351 30-125 (199)
184 KOG0916 1,3-beta-glucan syntha 35.2 96 0.0021 39.2 7.2 136 307-446 1051-1198(1679)
185 cd02524 G1P_cytidylyltransfera 35.1 3.6E+02 0.0077 27.4 10.8 107 232-350 19-143 (253)
186 TIGR00815 sulP high affinity s 35.1 7.7E+02 0.017 28.6 18.6 53 246-300 471-533 (563)
187 TIGR02623 G1P_cyt_trans glucos 34.5 4.6E+02 0.01 26.7 11.5 208 232-468 20-247 (254)
188 cd04198 eIF-2B_gamma_N The N-t 33.4 4.2E+02 0.0091 26.1 10.8 99 238-350 25-126 (214)
189 COG1208 GCD1 Nucleoside-diphos 33.3 2.7E+02 0.0059 30.3 10.0 99 239-351 27-125 (358)
190 PRK09451 glmU bifunctional N-a 32.8 4.2E+02 0.009 29.6 11.8 94 239-349 28-122 (456)
191 cd02538 G1P_TT_short G1P_TT_sh 31.9 4.2E+02 0.009 26.5 10.6 105 240-357 27-133 (240)
192 COG1861 SpsF Spore coat polysa 31.5 3.9E+02 0.0084 27.2 9.6 106 238-360 22-128 (241)
193 PRK11660 putative transporter; 31.4 8.8E+02 0.019 28.1 20.9 47 246-299 478-528 (568)
194 cd02509 GDP-M1P_Guanylyltransf 31.1 4.7E+02 0.01 27.1 11.0 90 238-337 26-116 (274)
195 COG0746 MobA Molybdopterin-gua 30.4 4E+02 0.0086 26.3 9.7 90 242-352 26-116 (192)
196 PRK14357 glmU bifunctional N-a 30.3 5.2E+02 0.011 28.7 12.0 94 238-350 22-116 (448)
197 PF10138 vWA-TerF-like: vWA fo 30.2 5.6E+02 0.012 25.5 10.5 101 243-348 84-187 (200)
198 TIGR01208 rmlA_long glucose-1- 29.5 4E+02 0.0087 28.6 10.6 96 240-349 26-122 (353)
199 cd04197 eIF-2B_epsilon_N The N 29.0 4.4E+02 0.0095 26.0 10.1 103 238-350 25-129 (217)
200 KOG2791 N-acetylglucosaminyltr 27.2 2.3E+02 0.0049 30.5 7.5 50 234-284 118-167 (455)
201 PF02348 CTP_transf_3: Cytidyl 27.0 3.3E+02 0.0072 26.6 8.8 95 245-353 24-119 (217)
202 PRK04125 murein hydrolase regu 26.8 3.3E+02 0.0072 25.6 7.8 34 118-151 5-38 (141)
203 PRK09382 ispDF bifunctional 2- 26.4 4.4E+02 0.0096 29.0 10.1 100 232-350 23-123 (378)
204 PRK10122 GalU regulator GalF; 25.1 8.2E+02 0.018 25.7 11.7 104 238-350 28-156 (297)
205 cd02541 UGPase_prokaryotic Pro 24.9 4.2E+02 0.0091 27.0 9.3 103 239-350 26-147 (267)
206 PLN02728 2-C-methyl-D-erythrit 24.7 6.3E+02 0.014 26.0 10.4 93 245-350 52-145 (252)
207 PRK14359 glmU bifunctional N-a 23.7 5.2E+02 0.011 28.5 10.4 91 239-346 25-116 (430)
208 KOG2264 Exostosin EXT1L [Signa 23.6 1.1E+02 0.0024 34.9 4.6 91 234-340 650-741 (907)
209 PRK14489 putative bifunctional 23.2 5.4E+02 0.012 28.0 10.1 41 307-350 79-120 (366)
No 1
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=6e-46 Score=430.89 Aligned_cols=419 Identities=24% Similarity=0.322 Sum_probs=288.5
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCCCCCC
Q 041566 145 WHFSPPTAETAELMVEFVYATWLQVRADYLAPPLKSLGHTCIVLFLIQSLDRLVLVIGCAWIKFKKVKPKAAMAYPVGKG 224 (687)
Q Consensus 145 w~~~~~~~~~i~~~~~~~y~~w~~~r~~~~~p~l~~l~~~~l~l~li~~i~~li~~~~~~~~~~~~~r~~~~~~~~~~~~ 224 (687)
.++++.+++.+.+++..+|++|+..-+....-++... +.+.+++++.+..+...++++...++..|+ +.+.+ .
T Consensus 182 ~~~~~~~l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~--~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~-~~~~~----~ 254 (852)
T PRK11498 182 GRFSALMLIVLSLTVSCRYIWWRYTSTLNWDDPVSLV--CGLILLFAETYAWIVLVLGYFQVVWPLNRQ-PVPLP----K 254 (852)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHheeeCCCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccccCC-CCCCC----c
Confidence 3555667778888889999999665544332222222 224455566666666666655544432221 11111 1
Q ss_pred CCCCCCCCCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccC
Q 041566 225 DDEDLEDYPMVLVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLI 303 (687)
Q Consensus 225 ~~~~~~~~P~VsViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~ 303 (687)
..+..|+|+|+||+|||+ +++++++.++++||||++++||+|+||||+|++.+++++ .+ +.|+.|++
T Consensus 255 ---~~~~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~-------~~--v~yI~R~~ 322 (852)
T PRK11498 255 ---DMSLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQE-------VG--VKYIARPT 322 (852)
T ss_pred ---ccCCCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHH-------CC--cEEEEeCC
Confidence 234579999999999999 678999999999999999999999999999999887763 34 45667777
Q ss_pred CCCChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCC--hhHHhhhh--hh
Q 041566 304 RSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDEN--LLTRLQNI--NL 379 (687)
Q Consensus 304 ~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~--~~~r~~~~--~~ 379 (687)
+.++|+||+|.|++ .+++|||+++|||++++||+|+++++.|.+||++|+||+++.+.|.+.- ...+.... +.
T Consensus 323 n~~gKAGnLN~aL~---~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~ 399 (852)
T PRK11498 323 HEHAKAGNINNALK---YAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEG 399 (852)
T ss_pred CCcchHHHHHHHHH---hCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcccch
Confidence 88899999999999 6899999999999999999999999998778999999999988876431 11111111 11
Q ss_pred hhhHHHHHhhccccccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHH
Q 041566 380 SFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYK 459 (687)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~ 459 (687)
...+...+...+.... ..++|+++++||++++++|||++++++||.+++.+++++||++.|++++.+.++.|+|++++.
T Consensus 400 ~~fy~~iq~g~~~~~a-~~~~Gs~aviRReaLeeVGGfd~~titED~dlslRL~~~Gyrv~yl~~~~a~glaPesl~~~~ 478 (852)
T PRK11498 400 TLFYGLVQDGNDMWDA-TFFCGSCAVIRRKPLDEIGGIAVETVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHI 478 (852)
T ss_pred hHHHHHHHhHHHhhcc-cccccceeeeEHHHHHHhcCCCCCccCccHHHHHHHHHcCCEEEEEeccceeEECCCCHHHHH
Confidence 1122222322222222 236899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccHHHHHHHhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-----cchhHHHHHH
Q 041566 460 KQQHRWHSGPMQLFRMCFIDIIRSKVSWAKKANLIFLFFLLRKLVLPFYSFTLFCIILPLTMFIP-----EAELPAWVVS 534 (687)
Q Consensus 460 ~Qr~RW~~G~~q~~~~~~~~~l~~~l~~~~k~~~~~~~~ll~~li~p~~~f~l~~~~~p~~~~~~-----~~~l~~~~~~ 534 (687)
+||.||++|.+|+++++.+ ++.+++++.+++.+...++..-.- .|-++ +++.|+.+++. .........+
T Consensus 479 ~QR~RWarG~lQi~r~~~p-l~~~gL~~~qRl~y~~~~l~~l~g-~~~l~----~l~~Pl~~l~~gi~~i~a~~~~i~~y 552 (852)
T PRK11498 479 GQRIRWARGMVQIFRLDNP-LTGKGLKLAQRLCYANAMLHFLSG-IPRLI----FLTAPLAFLLLHAYIIYAPALMIALF 552 (852)
T ss_pred HHHHHHHHHHHHHHHHhCh-hccCCCCHHHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHhCChheeCChHHHHHH
Confidence 9999999999999998754 446688888887655332211000 11111 11122222110 1112222334
Q ss_pred HHHHHHHHH--H-hhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccEEEeecCCCC
Q 041566 535 YVPGFMSIL--N-ILPAPRSFPFIVPYLLFENTMSVTKFNAMISGLFRFGSSYEWIVTKKLGRS 595 (687)
Q Consensus 535 ~~p~~i~~l--~-~~~~~~~~~~~~p~~lf~~~~s~~~~~A~i~gl~~~g~~~~w~vT~k~~~~ 595 (687)
.+|.++... . .+.. .+.....--+++.+++.....+++.+++.. +...|.||+|+++.
T Consensus 553 ~lP~~~~~~l~~~~~~g--~~r~~~wseiye~v~a~~l~~~~~~~ll~p-~~~~F~VTpKg~~~ 613 (852)
T PRK11498 553 VLPHMIHASLTNSRIQG--KYRHSFWSEIYETVLAWYIAPPTTVALFNP-HKGKFNVTAKGGLV 613 (852)
T ss_pred HHHHHHHHHHHHHHhcC--cchHhHHHHHHHHHHHHHHHHHHHHHHcCc-cCCCcccCCCCccc
Confidence 445443311 1 1221 112112234567777777777888888775 47889999998765
No 2
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=4.7e-45 Score=426.44 Aligned_cols=421 Identities=25% Similarity=0.332 Sum_probs=287.5
Q ss_pred cCchhHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCCCCCCC
Q 041566 146 HFSPPTAETAELMVEFVYATWLQVRADYLAPPLKSLGHTCIVLFLIQSLDRLVLVIGCAWIKFKKVKPKAAMAYPVGKGD 225 (687)
Q Consensus 146 ~~~~~~~~~i~~~~~~~y~~w~~~r~~~~~p~l~~l~~~~l~l~li~~i~~li~~~~~~~~~~~~~r~~~~~~~~~~~~~ 225 (687)
++++.+++.+.+++..+|++|+...+.....+... .+.+.+++++.+..+...++++...++..| .+...+
T Consensus 54 ~~~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~--~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r-~~~~~~------ 124 (713)
T TIGR03030 54 KRPRLLLLVLSVFISLRYLWWRLTETLPFDNTLNF--IFGTLLLLAELYSITILLLGYFQTVRPLDR-TPVPLP------ 124 (713)
T ss_pred chHHHHHHHHHHHHHHHHHHhheeeecCCCccHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccccc-CccCCC------
Confidence 56688888889999999999966544332222222 233445556666666555655544432222 111111
Q ss_pred CCCCCCCCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHH--------------HHHHHHHHHHh
Q 041566 226 DEDLEDYPMVLVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQ--------------LLIKAEVLKWQ 290 (687)
Q Consensus 226 ~~~~~~~P~VsViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~--------------~~l~~~~~~~~ 290 (687)
..++..|+|+|+||+|||+ +.+++|++++.+|+||.++++|+|+||+|+|.|. +.+++.++
T Consensus 125 -~~~~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~--- 200 (713)
T TIGR03030 125 -LDPEEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR--- 200 (713)
T ss_pred -CCcccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH---
Confidence 1245689999999999998 5668999999999999888999999999988762 22333332
Q ss_pred hcCcEEEEEeccCCCCChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCC--
Q 041566 291 QRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDE-- 368 (687)
Q Consensus 291 ~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~-- 368 (687)
+ .++.|+.|+++.++|++|+|.|++ .+++|||+++|||++++||+|+++++.|.+||++++||+++.+.|++.
T Consensus 201 ~--~~v~yi~r~~n~~~KAgnLN~al~---~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~ 275 (713)
T TIGR03030 201 K--LGVNYITRPRNVHAKAGNINNALK---HTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIE 275 (713)
T ss_pred H--cCcEEEECCCCCCCChHHHHHHHH---hcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHh
Confidence 2 345677788888899999999999 689999999999999999999999999987899999999988877642
Q ss_pred -Chh--HHhhhhhhhhhHHHHHhhccccccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHHcCCeEEEEcce
Q 041566 369 -NLL--TRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDV 445 (687)
Q Consensus 369 -~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a 445 (687)
+.. .+..+ +....+...+...+... ...++|+++++||++++++|||++++++||++++.+++++||++.|++++
T Consensus 276 ~nl~~~~~~~~-e~~~f~~~i~~g~~~~~-~~~~~Gs~~~iRR~al~~iGGf~~~~vtED~~l~~rL~~~G~~~~y~~~~ 353 (713)
T TIGR03030 276 RNLGTFRRMPN-ENELFYGLIQDGNDFWN-AAFFCGSAAVLRREALDEIGGIAGETVTEDAETALKLHRRGWNSAYLDRP 353 (713)
T ss_pred hhhHHHHHhhh-HHHHHHHHHHHHHhhhC-CeeecCceeEEEHHHHHHcCCCCCCCcCcHHHHHHHHHHcCCeEEEeccc
Confidence 111 11111 11111222222222222 22368999999999999999999999999999999999999999999999
Q ss_pred EEeeccCcCHHHHHHHHHHhhcccHHHHHHHhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-
Q 041566 446 KCLCELPESYEAYKKQQHRWHSGPMQLFRMCFIDIIRSKVSWAKKANLIFLFFLLRKLVLPFYSFTLFCIILPLTMFIP- 524 (687)
Q Consensus 446 ~~~~e~P~t~~~~~~Qr~RW~~G~~q~~~~~~~~~l~~~l~~~~k~~~~~~~~ll~~li~p~~~f~l~~~~~p~~~~~~- 524 (687)
.++++.|+|++++.+||.||++|.+|+++...+ ++.+++++.+|+.++......- .-.|. +..++.|+.+++.
T Consensus 354 ~~~g~~p~sl~~~~~Qr~RWa~G~~qi~~~~~p-l~~~gl~~~qrl~y~~~~~~~~-~~~~~----~~~~~~P~~~l~~~ 427 (713)
T TIGR03030 354 LIAGLAPETLSGHIGQRIRWAQGMMQIFRLDNP-LLKRGLSFPQRLCYLNAMLFWF-FPLPR----VIFLTAPLAYLFFG 427 (713)
T ss_pred cccccCCCCHHHHHHHHHHHhcChHHHHhhhCc-cccCCCCHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHhC
Confidence 999999999999999999999999999886543 4456788888877553221100 00111 1112222222111
Q ss_pred ----cchhHHHHHHHHHHHHHHH---HhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccEEEeecCCCC
Q 041566 525 ----EAELPAWVVSYVPGFMSIL---NILPAPRSFPFIVPYLLFENTMSVTKFNAMISGLFRFGSSYEWIVTKKLGRS 595 (687)
Q Consensus 525 ----~~~l~~~~~~~~p~~i~~l---~~~~~~~~~~~~~p~~lf~~~~s~~~~~A~i~gl~~~g~~~~w~vT~k~~~~ 595 (687)
......+..+++|.++..+ .........+++ --+++.+++.....+++.+++... ...|.||+|++..
T Consensus 428 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~F~VT~Kg~~~ 502 (713)
T TIGR03030 428 LNIFVASALEILAYALPHMLHSLLTNSYLFGRVRWPFW--SEVYETVLAVYLLPPVLVTLLNPK-KPKFNVTPKGELL 502 (713)
T ss_pred CcceeCCHHHHHHHHHHHHHHHHHHHHHHcCCeecchH--HHHHHHHHHHHHHHHHHHHHhCcC-CCCceecCCCccc
Confidence 1122222334444333322 122222222332 347778888888889999998764 6689999998765
No 3
>PRK11204 N-glycosyltransferase; Provisional
Probab=100.00 E-value=8.6e-40 Score=362.69 Aligned_cols=244 Identities=24% Similarity=0.345 Sum_probs=209.5
Q ss_pred CCCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCCh
Q 041566 229 LEDYPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYK 308 (687)
Q Consensus 229 ~~~~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggK 308 (687)
....|+|+|+||+|||++.+++|++|+.+|+||+ +||+|+||+|+|++.+.+++..++ ..++.+.+.+++ +||
T Consensus 50 ~~~~p~vsViIp~yne~~~i~~~l~sl~~q~yp~--~eiiVvdD~s~d~t~~~l~~~~~~----~~~v~~i~~~~n-~Gk 122 (420)
T PRK11204 50 LKEYPGVSILVPCYNEGENVEETISHLLALRYPN--YEVIAINDGSSDNTGEILDRLAAQ----IPRLRVIHLAEN-QGK 122 (420)
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHhCCCCC--eEEEEEECCCCccHHHHHHHHHHh----CCcEEEEEcCCC-CCH
Confidence 3457899999999999999999999999999995 889999999999999988876543 334555554444 459
Q ss_pred HhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHh
Q 041566 309 AGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQ 388 (687)
Q Consensus 309 a~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~ 388 (687)
++|+|.|++ .+++|+++++|+|+.++||+++++++.|+++|++++|+|.....|. .++.++.+..++...+...+.
T Consensus 123 a~aln~g~~---~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 198 (420)
T PRK11204 123 ANALNTGAA---AARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNR-STLLGRIQVGEFSSIIGLIKR 198 (420)
T ss_pred HHHHHHHHH---HcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccc-hhHHHHHHHHHHHHhhhHHHH
Confidence 999999999 6899999999999999999999999999878999999998877664 467777776666544444444
Q ss_pred hccccccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHHHHhhcc
Q 041566 389 VNGVFINFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWHSG 468 (687)
Q Consensus 389 ~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~G 468 (687)
..+..+...+.+|+++++||++++++|||+++..+||++++.++.++||++.|+|++.++++.|+|++++.+||+||++|
T Consensus 199 ~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~~~~~~ED~~l~~rl~~~G~~i~~~p~~~~~~~~p~t~~~~~~Qr~RW~~G 278 (420)
T PRK11204 199 AQRVYGRVFTVSGVITAFRKSALHEVGYWSTDMITEDIDISWKLQLRGWDIRYEPRALCWILMPETLKGLWKQRLRWAQG 278 (420)
T ss_pred HHHHhCCceEecceeeeeeHHHHHHhCCCCCCcccchHHHHHHHHHcCCeEEeccccEEEeECcccHHHHHHHHHHHhcC
Confidence 44445556667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhHHHhhc
Q 041566 469 PMQLFRMCFIDIIRS 483 (687)
Q Consensus 469 ~~q~~~~~~~~~l~~ 483 (687)
.+|.++++.+..++.
T Consensus 279 ~~~~l~~~~~~~~~~ 293 (420)
T PRK11204 279 GAEVLLKNFRRLWRW 293 (420)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999987766554
No 4
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=100.00 E-value=8.5e-39 Score=356.61 Aligned_cols=242 Identities=20% Similarity=0.292 Sum_probs=208.2
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChH
Q 041566 230 EDYPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKA 309 (687)
Q Consensus 230 ~~~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa 309 (687)
+..|+|+|+||+|||++.+++||+|+++|+||+ +||+|+||+|+|+|.+.+++..+++ .++++ .+.++ ++||+
T Consensus 72 ~~~p~vsViIP~yNE~~~i~~~l~sll~q~yp~--~eIivVdDgs~D~t~~~~~~~~~~~--~~v~v--v~~~~-n~Gka 144 (444)
T PRK14583 72 KGHPLVSILVPCFNEGLNARETIHAALAQTYTN--IEVIAINDGSSDDTAQVLDALLAED--PRLRV--IHLAH-NQGKA 144 (444)
T ss_pred CCCCcEEEEEEeCCCHHHHHHHHHHHHcCCCCC--eEEEEEECCCCccHHHHHHHHHHhC--CCEEE--EEeCC-CCCHH
Confidence 347899999999999999999999999999995 8899999999999998888765532 23343 33333 45699
Q ss_pred hHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhh
Q 041566 310 GNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQV 389 (687)
Q Consensus 310 ~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~ 389 (687)
+|+|.|++ .+++|+++++|||++++||++++++..|.++|++++||+.....+. .++.++.+..++...+...+..
T Consensus 145 ~AlN~gl~---~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~ 220 (444)
T PRK14583 145 IALRMGAA---AARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTR-STLIGRVQVGEFSSIIGLIKRT 220 (444)
T ss_pred HHHHHHHH---hCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCC-CcchhhHHHHHHHHHHHHHHHH
Confidence 99999999 6899999999999999999999999999888999999998876654 5777888877766555544444
Q ss_pred ccccccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHHHHhhccc
Q 041566 390 NGVFINFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWHSGP 469 (687)
Q Consensus 390 ~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~G~ 469 (687)
.+..+..++.+|+++++||++++++|||+++.++||.|++.++.++||++.|.|++.++++.|+|++++++||.||++|.
T Consensus 221 ~~~~g~~~~~sG~~~~~rr~al~~vGg~~~~~i~ED~dl~~rl~~~G~~i~~~p~a~~~~~~p~t~~~~~~Qr~RW~~G~ 300 (444)
T PRK14583 221 QRVYGQVFTVSGVVAAFRRRALADVGYWSPDMITEDIDISWKLQLKHWSVFFEPRGLCWILMPETLRGLWKQRLRWAQGG 300 (444)
T ss_pred HHHhCCceEecCceeEEEHHHHHHcCCCCCCcccccHHHHHHHHHcCCeEEEeeccEEeeeCCCCHHHHHHHHHHHhCcH
Confidence 44555666688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHhh
Q 041566 470 MQLFRMCFIDIIR 482 (687)
Q Consensus 470 ~q~~~~~~~~~l~ 482 (687)
.|.+.+++...+.
T Consensus 301 ~~~~~~~~~~~~~ 313 (444)
T PRK14583 301 AEVFLKNMFKLWR 313 (444)
T ss_pred HHHHHHHHHHHhC
Confidence 9999988766654
No 5
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=100.00 E-value=6.3e-37 Score=340.78 Aligned_cols=253 Identities=16% Similarity=0.232 Sum_probs=197.5
Q ss_pred CCCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCCh
Q 041566 229 LEDYPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYK 308 (687)
Q Consensus 229 ~~~~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggK 308 (687)
++..|+|+|+||+|||++.+.+||+|+.+|+||++++||+|+||+|+|+|.+++++..+++ .++.+.+. ++++||
T Consensus 45 ~~~~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~--~~v~v~~~---~~~~Gk 119 (439)
T TIGR03111 45 IGKLPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEF--PGLSLRYM---NSDQGK 119 (439)
T ss_pred cCCCCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhC--CCeEEEEe---CCCCCH
Confidence 3568999999999999999999999999999999889999999999999999887655432 23333322 234679
Q ss_pred HhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccC----CCC----hhHHhhhhhhh
Q 041566 309 AGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNK----DEN----LLTRLQNINLS 380 (687)
Q Consensus 309 a~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~----~~~----~~~r~~~~~~~ 380 (687)
++|+|.|++ .+++|||+++|+|+.++||+++++++.|.+||++++++|....... ..+ +..+.+..++.
T Consensus 120 a~AlN~gl~---~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 196 (439)
T TIGR03111 120 AKALNAAIY---NSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYA 196 (439)
T ss_pred HHHHHHHHH---HccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHH
Confidence 999999999 6889999999999999999999999999888999999987643211 001 11122222222
Q ss_pred hhHHHHHhhccccccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHH-cCCeEEEEcceEEeeccCcCHHHHH
Q 041566 381 FHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHL-CGWKFVYVNDVKCLCELPESYEAYK 459 (687)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~-~G~ri~~~~~a~~~~e~P~t~~~~~ 459 (687)
..+...+...+.....++.+|+++++||++++++|||++++++||++++.++.. .|+++.++|++.++++.|+|+++++
T Consensus 197 ~~~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~~~p~t~~~~~ 276 (439)
T TIGR03111 197 QAFLAGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNSETVGEDTDMTFQIRELLDGKVYLCENAIFYVDPIDGLNKLY 276 (439)
T ss_pred HHHHhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCCCCcCccHHHHHHHHHhcCCeEEECCCCEEEEECCcCHHHHH
Confidence 212111222233334455789999999999999999999999999999999964 6999999999999999999999999
Q ss_pred HHHHHhhcccHHHHHHHhHHHhhcCCcHHH
Q 041566 460 KQQHRWHSGPMQLFRMCFIDIIRSKVSWAK 489 (687)
Q Consensus 460 ~Qr~RW~~G~~q~~~~~~~~~l~~~l~~~~ 489 (687)
+||.||.+|.+|+++.+.+....+..++.+
T Consensus 277 ~QR~RW~rG~~qv~~~~~~~~~~~~~~~~~ 306 (439)
T TIGR03111 277 TQRQRWQRGELEVSHMFFESANKSIKGFFS 306 (439)
T ss_pred HHHHHHhccHHHHHHHHHhhhhhchhhhhh
Confidence 999999999999998876544333343333
No 6
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=6.2e-36 Score=343.57 Aligned_cols=271 Identities=20% Similarity=0.214 Sum_probs=213.2
Q ss_pred CCCCCeEEEEeecCCch-----HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHH----HHHHHhhcCcEEEEE
Q 041566 229 LEDYPMVLVQIPMCNER-----EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKA----EVLKWQQRGVHIIYR 299 (687)
Q Consensus 229 ~~~~P~VsViIP~yNE~-----~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~----~~~~~~~~~v~i~~~ 299 (687)
....|+|+|+||+|||+ +.++.+++|+.+|+|++ +++|+|+||++||++....++ .+++++ .+.++.|+
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~-~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~-~~~~i~yr 197 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGA-HFDFFILSDTRDPDIAAAEEAAWLELRAELG-GEGRIFYR 197 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCC-CEEEEEEECCCChhHHHHHHHHHHHHHHhcC-CCCcEEEE
Confidence 45578999999999999 35889999999999975 699999999999988654333 333332 25689999
Q ss_pred eccCCCCChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhh
Q 041566 300 HRLIRSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINL 379 (687)
Q Consensus 300 ~r~~~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~ 379 (687)
+|.+|.|.|+||+|.+++.. ..++||++++|||+++++|+++++++.|++||++|+||+++...|. +++++++|.+..
T Consensus 198 ~R~~n~~~KaGNl~~~~~~~-~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~-~slfaR~qqf~~ 275 (691)
T PRK05454 198 RRRRNVGRKAGNIADFCRRW-GGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGA-DTLFARLQQFAT 275 (691)
T ss_pred ECCcCCCccHHHHHHHHHhc-CCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCC-CCHHHHHHHHHH
Confidence 99999999999999999832 2678999999999999999999999999988999999999888886 489999987554
Q ss_pred hhhHHHHHh-hccccccccccccceEEEehhhhhhhC---------CCCCCCccchHHHHHHHHHcCCeEEEEcc-eEEe
Q 041566 380 SFHFEVEQQ-VNGVFINFFGFNGTAGVWRIKALEECG---------GWLDRTTVEDMDIAVRAHLCGWKFVYVND-VKCL 448 (687)
Q Consensus 380 ~~~~~~~~~-~~~~~~~~~~~~G~~~~~Rr~aL~~iG---------Gf~~~~~~ED~~l~~rl~~~G~ri~~~~~-a~~~ 448 (687)
......... .....++...+.|++.++|++++.+++ +|..+.++||++++.++.++||++.|+|+ ..++
T Consensus 276 ~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd~~~~~ 355 (691)
T PRK05454 276 RVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPDLPGSY 355 (691)
T ss_pred HHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCcccccc
Confidence 332222111 111111222378999999999998764 56667889999999999999999999999 5689
Q ss_pred eccCcCHHHHHHHHHHhhcccHHHHHHHhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 041566 449 CELPESYEAYKKQQHRWHSGPMQLFRMCFIDIIRSKVSWAKKANLIFLFFLLRKLVLPFYS 509 (687)
Q Consensus 449 ~e~P~t~~~~~~Qr~RW~~G~~q~~~~~~~~~l~~~l~~~~k~~~~~~~~ll~~li~p~~~ 509 (687)
++.|+|++++.+||+||++|.+|.++... .+++++..|..++. .++..+..|++.
T Consensus 356 ee~P~tl~~~~~qr~RW~~G~lQ~l~~l~----~~gl~~~~R~~~l~--g~~~yl~~P~wl 410 (691)
T PRK05454 356 EELPPNLLDELKRDRRWCQGNLQHLRLLL----AKGLHPVSRLHFLT--GIMSYLSAPLWL 410 (691)
T ss_pred ccCCCCHHHHHHHHHHHHhchHHHHHHHH----hcCCCHHHHHHHHH--HHHHHHHHHHHH
Confidence 99999999999999999999999876533 45677777776542 334445556543
No 7
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=100.00 E-value=3.9e-37 Score=313.47 Aligned_cols=232 Identities=49% Similarity=0.862 Sum_probs=200.9
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHH
Q 041566 233 PMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNL 312 (687)
Q Consensus 233 P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aL 312 (687)
|+|||+||+|||++.+.++|+|+.+|+||.+++||+|+|| |+|.|.+.+++..+++...++++.+..+.+++|+|++|+
T Consensus 1 p~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~ 79 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGAL 79 (232)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHH
Confidence 6799999999999999999999999999988889999998 788888888887777666677888777777788899999
Q ss_pred HHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccc
Q 041566 313 NSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGV 392 (687)
Q Consensus 313 n~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~ 392 (687)
|.|++ .+++|||+++|+|++++|++|+++...+. +|++++|++.....+.+.+++.+.+.+.+.+++...+.....
T Consensus 80 n~g~~---~a~~~~i~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (232)
T cd06437 80 AEGMK---VAKGEYVAIFDADFVPPPDFLQKTPPYFA-DPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSS 155 (232)
T ss_pred HHHHH---hCCCCEEEEEcCCCCCChHHHHHhhhhhc-CCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhh
Confidence 99999 68999999999999999999999887776 699999999887778777888877776655444443332222
Q ss_pred cccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHHHHhhccc
Q 041566 393 FINFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWHSGP 469 (687)
Q Consensus 393 ~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~G~ 469 (687)
.....+++|+++++||++++++|||++....||++++.|+..+||++.|+|++.++++.|+|++++++||.||.+|.
T Consensus 156 ~~~~~~~~g~~~~~rr~~~~~vgg~~~~~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 156 TGLFFNFNGTAGVWRKECIEDAGGWNHDTLTEDLDLSYRAQLKGWKFVYLDDVVVPAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred cCCeEEeccchhhhhHHHHHHhCCCCCCcchhhHHHHHHHHHCCCeEEEeccceeeeeCCcCHHHHHHHHHHhccCC
Confidence 23334468999999999999999999888899999999999999999999999999999999999999999999984
No 8
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=100.00 E-value=2.2e-33 Score=312.40 Aligned_cols=282 Identities=16% Similarity=0.135 Sum_probs=200.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CcccccCCCCCCCCCCCCCCCCeEEEEeecCCchHHHHHHHHHHH-cCC
Q 041566 182 GHTCIVLFLIQSLDRLVLVIGCAWIKFKKV-KPKAAMAYPVGKGDDEDLEDYPMVLVQIPMCNEREVYGQSIAAVC-IQD 259 (687)
Q Consensus 182 ~~~~l~l~li~~i~~li~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~P~VsViIP~yNE~~~l~~tL~Sl~-~q~ 259 (687)
..+..+++++..++.+++...+...+..++ ++.++ ++....+....|+++|+||+|||+++|.++|++++ +++
T Consensus 19 ~~~~~~~~~~~~~ddl~id~~y~~~~~~r~~~~~~~-----~~~~~l~~~~~p~vaIlIPA~NE~~vI~~~l~s~L~~ld 93 (504)
T PRK14716 19 LLVVAVLILLSGLDDLFIDAVYLARRLYRRRSRIPR-----LSLATLRSVPEKRIAIFVPAWREADVIGRMLEHNLATLD 93 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-----cChhhcccCCCCceEEEEeccCchhHHHHHHHHHHHcCC
Confidence 334455666777788777665443333222 11111 11222234558999999999999999999999964 789
Q ss_pred CCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhccc---cc---CCccEEEEEcCC
Q 041566 260 WPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCD---YV---KDYEFVAIFDAD 333 (687)
Q Consensus 260 yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~---~~---a~~d~V~~lDaD 333 (687)
||+ ++|+|+||++||+|.+.+++..+++++ ++++... .++..+|++|+|.+++.. .. .++|+|+++|||
T Consensus 94 Y~~--~eIiVv~d~ndd~T~~~v~~l~~~~p~--v~~vv~~-~~gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD 168 (504)
T PRK14716 94 YEN--YRIFVGTYPNDPATLREVDRLAARYPR--VHLVIVP-HDGPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAE 168 (504)
T ss_pred CCC--eEEEEEECCCChhHHHHHHHHHHHCCC--eEEEEeC-CCCCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCC
Confidence 974 889999999999999998887765432 4444432 333457999999998742 11 235999999999
Q ss_pred CCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCC-ChhHHhhhhhhhhhHHHHHhhccccccccccccceEEEehhhhh
Q 041566 334 FQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDE-NLLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALE 412 (687)
Q Consensus 334 ~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~ 412 (687)
++++|++|+.+...+. +.++||.+....+... .+.+.....++...+..........+...+.+|+++++||++++
T Consensus 169 ~~v~Pd~Lr~~~~~~~---~~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe 245 (504)
T PRK14716 169 DVIHPLELRLYNYLLP---RHDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALE 245 (504)
T ss_pred CCcCccHHHHHHhhcC---CCCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHH
Confidence 9999999998776553 4467887765544333 33333333333322222222233444555678999999999999
Q ss_pred hh-----CC-CCCCCccchHHHHHHHHHcCCeEEEEcceE---------------EeeccCcCHHHHHHHHHHhhccc-H
Q 041566 413 EC-----GG-WLDRTTVEDMDIAVRAHLCGWKFVYVNDVK---------------CLCELPESYEAYKKQQHRWHSGP-M 470 (687)
Q Consensus 413 ~i-----GG-f~~~~~~ED~~l~~rl~~~G~ri~~~~~a~---------------~~~e~P~t~~~~~~Qr~RW~~G~-~ 470 (687)
++ |+ |++++++||++++.++.++|||+.|+|++. ++++.|+|++++++||.||..|. +
T Consensus 246 ~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~t~e~~P~t~~a~~rQR~RW~~Gi~~ 325 (504)
T PRK14716 246 RLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIATREFFPDTFKAAVRQKARWIYGIAF 325 (504)
T ss_pred HHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEecccccccccccccccccccccccCccCHHHHHHHHHHHHhchHH
Confidence 98 33 999999999999999999999999999884 34678999999999999999995 7
Q ss_pred HHHHHH
Q 041566 471 QLFRMC 476 (687)
Q Consensus 471 q~~~~~ 476 (687)
|.+++.
T Consensus 326 Q~~~~~ 331 (504)
T PRK14716 326 QGWERL 331 (504)
T ss_pred hhHHhc
Confidence 876543
No 9
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5.5e-34 Score=317.47 Aligned_cols=236 Identities=30% Similarity=0.467 Sum_probs=202.9
Q ss_pred CCeEEEEeecCCchH-HHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHh
Q 041566 232 YPMVLVQIPMCNERE-VYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAG 310 (687)
Q Consensus 232 ~P~VsViIP~yNE~~-~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~ 310 (687)
.|+|+|+||+|||++ +++++++|+++|+||. +||+|+||+++|++.+.+++...++. ...++.+. +++++||++
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~~~~~~~~-~~~~~~~~--~~~~~gK~~ 127 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILEELGAEYG-PNFRVIYP--EKKNGGKAG 127 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHHHHHhhcC-cceEEEec--cccCccchH
Confidence 599999999999996 9999999999999997 88999999999999999998776542 13333311 356778999
Q ss_pred HHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCC--CChhHHhhhhhhhhhHHHHHh
Q 041566 311 NLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKD--ENLLTRLQNINLSFHFEVEQQ 388 (687)
Q Consensus 311 aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~--~~~~~r~~~~~~~~~~~~~~~ 388 (687)
|+|.|++ .+++|+|+++|||+.++||+|+++++.|.+ ++.+++++.....+.. .+++++.+..++...+.....
T Consensus 128 al~~~l~---~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~-~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 203 (439)
T COG1215 128 ALNNGLK---RAKGDVVVILDADTVPEPDALRELVSPFED-PPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLR 203 (439)
T ss_pred HHHHHHh---hcCCCEEEEEcCCCCCChhHHHHHHhhhcC-CCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhh
Confidence 9999999 678999999999999999999999999996 5555566655555544 688899999888766665555
Q ss_pred hccccccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHHHHhhcc
Q 041566 389 VNGVFINFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWHSG 468 (687)
Q Consensus 389 ~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~G 468 (687)
..+..+....++|++.++||++++++|||.+.+++||.+++.+++.+||++.|++++.++++.|+|++++++||.||.+|
T Consensus 204 ~~~~~g~~~~~~G~~~~~rr~aL~~~g~~~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW~~g 283 (439)
T COG1215 204 AASKGGLISFLSGSSSAFRRSALEEVGGWLEDTITEDADLTLRLHLRGYRVVYVPEAIVWTEAPETLKELWRQRLRWARG 283 (439)
T ss_pred hhhhcCCeEEEcceeeeEEHHHHHHhCCCCCCceeccHHHHHHHHHCCCeEEEeecceEeeeCcccHHHHHHHHHHHHcc
Confidence 44545456668999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHH
Q 041566 469 PMQLFRMC 476 (687)
Q Consensus 469 ~~q~~~~~ 476 (687)
.+|.+..+
T Consensus 284 ~~~~~~~~ 291 (439)
T COG1215 284 GLQVLLLH 291 (439)
T ss_pred cceeeehh
Confidence 99998764
No 10
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=100.00 E-value=5.1e-35 Score=299.97 Aligned_cols=237 Identities=27% Similarity=0.397 Sum_probs=193.4
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHH
Q 041566 233 PMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNL 312 (687)
Q Consensus 233 P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aL 312 (687)
|.|||+||+|||++.+.++|+|+++|+||.+++||+||||+|+|.|.+++++... ....+++.... .++.||+.|+
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~---~~~~~i~~~~~-~~~~G~~~a~ 76 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRL---PSIFRVVVVPP-SQPRTKPKAC 76 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhcc---CCCeeEEEecC-CCCCchHHHH
Confidence 7899999999999999999999999999987899999999999999988875421 12345555433 3345799999
Q ss_pred HHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccC-CCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhcc
Q 041566 313 NSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGN-DDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNG 391 (687)
Q Consensus 313 n~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~-p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~ 391 (687)
|.|++ .+++|||+++|+|++++|+++.+++..|.++ +++++++++....+...++..+.....+...+.......+
T Consensus 77 n~g~~---~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 77 NYALA---FARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHH---hcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 6899999999999999999999999999754 8999999988777766666666554444332222211112
Q ss_pred ccccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHHHHhhcccHH
Q 041566 392 VFINFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWHSGPMQ 471 (687)
Q Consensus 392 ~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~G~~q 471 (687)
.......++|+++++||++++++|||++....||++++.|+.++||++.+++++ ++++.|+|++.+.+||+||.+|.+|
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~~~~~eD~~l~~rl~~~G~r~~~~~~~-~~~~~~~~~~~~~~q~~Rw~~g~~~ 232 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWDPFNVTEDADLGLRLARAGYRTGVLNST-TLEEANNALGNWIRQRSRWIKGYMQ 232 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCCcccchhhHHHHHHHHHCCceEEEeccc-ccccCcHhHHHHHHHHHHHhccHHH
Confidence 222333467899999999999999999888899999999999999999999875 5788999999999999999999999
Q ss_pred HHHHHh
Q 041566 472 LFRMCF 477 (687)
Q Consensus 472 ~~~~~~ 477 (687)
+++.+.
T Consensus 233 ~~~~~~ 238 (241)
T cd06427 233 TWLVHM 238 (241)
T ss_pred HHHHHh
Confidence 987764
No 11
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=1.6e-33 Score=317.43 Aligned_cols=335 Identities=18% Similarity=0.217 Sum_probs=232.5
Q ss_pred chh-HHHHHHHHHHHHHHHHHHHHhhhcCCccCchhHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHH
Q 041566 116 HSR-FYRAIKWMLILVISLLCFELAAYFKGWHFSPPTAETAELMVEFVYATWLQVRADYLAPPLKSLGHTCIVLFLIQSL 194 (687)
Q Consensus 116 ~~~-~~~~~~~~l~~~~~ll~~~~~~~~~~w~~~~~~~~~i~~~~~~~y~~w~~~r~~~~~p~l~~l~~~~l~l~li~~i 194 (687)
+++ +||...++.++++++++.+++.+...-. .. +.| +++++....
T Consensus 21 ~~~~~~R~~~~~~~~~i~~ll~~r~~~~~~~~---~~------------~~w-------------------~~~~~~e~w 66 (734)
T PLN02893 21 RRTIANRVFAVVYSCAILALLYHHVIALLHST---TT------------LIT-------------------LLLLLADIV 66 (734)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhccccccc---ch------------HHH-------------------HHHHHHHHH
Confidence 344 6999999999999999888887544311 11 123 122222211
Q ss_pred HHHHHHHHHHHhhhhccCcccccCCCCCCCCCC-CCCCCCeEEEEeec---CCch-HHHHHHHHHHHcCCCCCCceEEEE
Q 041566 195 DRLVLVIGCAWIKFKKVKPKAAMAYPVGKGDDE-DLEDYPMVLVQIPM---CNER-EVYGQSIAAVCIQDWPKERMLVQI 269 (687)
Q Consensus 195 ~~li~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~P~VsViIP~---yNE~-~~l~~tL~Sl~~q~yP~~~leViV 269 (687)
..+...+ --..++.+.++.+..+. ++.. ..+++|.|+|+|++ ++|+ -...+|+-|+++.|||.+|+.++|
T Consensus 67 f~f~W~l-~q~~k~~Pv~r~~~~~~----L~~~~~~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~Yv 141 (734)
T PLN02893 67 LAFMWAT-TQAFRMCPVHRRVFIEH----LEHYAKESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYV 141 (734)
T ss_pred HHHHHHH-ccCccccccccccCHHH----HhhhcccccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEE
Confidence 1110111 11124444444433332 2211 23569999999999 6676 677899999999999999999999
Q ss_pred EcCCCChhHHHHHHHH-------------------------------------------------H----------HH--
Q 041566 270 LDDSDDLDVQLLIKAE-------------------------------------------------V----------LK-- 288 (687)
Q Consensus 270 vDD~s~d~t~~~l~~~-------------------------------------------------~----------~~-- 288 (687)
.|||.+.-|.+.+.+. + ++
T Consensus 142 SDDGgs~lt~~al~Eaa~FA~~WvPFCrk~~ie~R~P~~YF~~~~~~~~~e~~~~k~~Yee~k~ri~~~~~~~~~~~~~~ 221 (734)
T PLN02893 142 SDDGGSKLTLFAFMEAAKFATHWLPFCKKNKIVERCPEAYFSSNSHSWSPETEQIKMMYESMKVRVENVVERGKVSTDYI 221 (734)
T ss_pred ecCCccHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHhcCcCchhhh
Confidence 9999987772222111 0 00
Q ss_pred -----------Hhh--------------------------cCcEEEEEeccCC----CCChHhHHHHHhccc-ccCCccE
Q 041566 289 -----------WQQ--------------------------RGVHIIYRHRLIR----SGYKAGNLNSAMGCD-YVKDYEF 326 (687)
Q Consensus 289 -----------~~~--------------------------~~v~i~~~~r~~~----~ggKa~aLn~gl~~~-~~a~~d~ 326 (687)
|.+ .-++++|+.|++| ++.||||||.+++.+ ..++++|
T Consensus 222 ~~~~~~~~f~~w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~Tngpf 301 (734)
T PLN02893 222 TCDQEREAFSRWTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPI 301 (734)
T ss_pred hhcccccccccCcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCE
Confidence 100 0135788888887 478999999999954 3479999
Q ss_pred EEEEcCCCCC-CHHHHHHHHHHHcc---CCCeEEEeeeeeeccCCCC-hhHHhhhhhhhhhHHHHH-hhccccccccccc
Q 041566 327 VAIFDADFQP-TPDFLKKTIPYFKG---NDDLALVQTRWSFVNKDEN-LLTRLQNINLSFHFEVEQ-QVNGVFINFFGFN 400 (687)
Q Consensus 327 V~~lDaD~~~-~pd~L~~lv~~f~~---~p~vg~Vqg~~~~~n~~~~-~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 400 (687)
|+++|||+.+ +|+++++++++|.+ +++++.||.++.+.|.+.+ .+.... ...+...+ ..++..+. .++
T Consensus 302 Il~lDcD~y~n~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~----~vff~~~~~glDG~~gp--~y~ 375 (734)
T PLN02893 302 ILTLDCDMYSNDPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGEL----KRLFQINMIGMDGLAGP--NYV 375 (734)
T ss_pred EEEecCCcCCCchhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchh----HHHHHHHhhcccccCCc--eee
Confidence 9999999996 79999999999984 2379999999999877554 111111 12223333 23333322 378
Q ss_pred cceEEEehhhhhh------------------------------------------------hCCCCCCCccchHHHHHHH
Q 041566 401 GTAGVWRIKALEE------------------------------------------------CGGWLDRTTVEDMDIAVRA 432 (687)
Q Consensus 401 G~~~~~Rr~aL~~------------------------------------------------iGGf~~~~~~ED~~l~~rl 432 (687)
|+++++||+++.. .+||..++++||..+++++
T Consensus 376 GTGc~~RR~al~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~l 455 (734)
T PLN02893 376 GTGCFFRRRVFYGGPSSLILPEIPELNPDHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRL 455 (734)
T ss_pred ccceEEEHHHhcCCCccccchhhhhcccccccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHH
Confidence 9999999999930 1467788899999999999
Q ss_pred HHcCCeEEEEcc--eEEeeccCcCHHHHHHHHHHhhcccHHHHH-HHhHHHhh-cCCcHHHHHHHHH
Q 041566 433 HLCGWKFVYVND--VKCLCELPESYEAYKKQQHRWHSGPMQLFR-MCFIDIIR-SKVSWAKKANLIF 495 (687)
Q Consensus 433 ~~~G~ri~~~~~--a~~~~e~P~t~~~~~~Qr~RW~~G~~q~~~-~~~~~~l~-~~l~~~~k~~~~~ 495 (687)
+.+|||.+|++. ....+.+|+++.+++.||.||+.|.+|++. ++.|.+.. .++++.+++.++.
T Consensus 456 h~~GWrSvY~~p~~~af~G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~~~L~~~Qrl~Y~~ 522 (734)
T PLN02893 456 QCEGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGVKSIGLLMGLGYAH 522 (734)
T ss_pred HhcCCcEEecCCCchhhccCCCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcccCCCHHHHHHHHH
Confidence 999999999963 346899999999999999999999999976 45665543 4799999877653
No 12
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=7.8e-34 Score=292.62 Aligned_cols=233 Identities=21% Similarity=0.262 Sum_probs=189.0
Q ss_pred EEEEeecCCch-HHHHHHHHHHHc----CCCCCCceEEEEEcCCCChhHHHH----HHHHHHHHhhcCcEEEEEeccCCC
Q 041566 235 VLVQIPMCNER-EVYGQSIAAVCI----QDWPKERMLVQILDDSDDLDVQLL----IKAEVLKWQQRGVHIIYRHRLIRS 305 (687)
Q Consensus 235 VsViIP~yNE~-~~l~~tL~Sl~~----q~yP~~~leViVvDD~s~d~t~~~----l~~~~~~~~~~~v~i~~~~r~~~~ 305 (687)
|||+||+|||+ +.+.++|.+.++ |+|++ +++|+|+||++++..... +++.++++++ ++++.+.+|+++.
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~-~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~-~~~v~~~~r~~~~ 78 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLAD-HFDFFILSDTRDPDIWLAEEAAWLDLCEELGA-QGRIYYRRRRENT 78 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcC-ceEEEEECCCCChHHHHHHHHHHHHHHHHhCC-CCcEEEEEcCCCC
Confidence 69999999999 558999999885 67633 489999999999866432 2334555543 7899999999999
Q ss_pred CChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHH
Q 041566 306 GYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEV 385 (687)
Q Consensus 306 ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~ 385 (687)
|.|++++|.++.. ..+++|||+++|||++++||+|+++++.|..||++|+||+++.+.|.+ +++++++.++.......
T Consensus 79 g~Kag~l~~~~~~-~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~-~~~~~~~~~~~~~~~~~ 156 (254)
T cd04191 79 GRKAGNIADFCRR-WGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAE-TLFARLQQFANRLYGPV 156 (254)
T ss_pred CccHHHHHHHHHH-hCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCC-CHHHHHHHHHHHHHHHH
Confidence 9999999999973 126889999999999999999999999998789999999999988874 88899887664332222
Q ss_pred HHhhccc-cccccccccceEEEehhhhhhh---------CCCCCCCccchHHHHHHHHHcCCeEEEEcceE-EeeccCcC
Q 041566 386 EQQVNGV-FINFFGFNGTAGVWRIKALEEC---------GGWLDRTTVEDMDIAVRAHLCGWKFVYVNDVK-CLCELPES 454 (687)
Q Consensus 386 ~~~~~~~-~~~~~~~~G~~~~~Rr~aL~~i---------GGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~-~~~e~P~t 454 (687)
.+...+. ......++|+++++||++|+++ |+|..++++||++++.++..+||+++|.|++. ++++.|++
T Consensus 157 ~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~~~~~~~p~~ 236 (254)
T cd04191 157 FGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPDLEGSYEECPPT 236 (254)
T ss_pred HHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccCCcceEeECCCC
Confidence 2221111 1122236899999999999884 34556788999999999999999999999987 58899999
Q ss_pred HHHHHHHHHHhhcccHH
Q 041566 455 YEAYKKQQHRWHSGPMQ 471 (687)
Q Consensus 455 ~~~~~~Qr~RW~~G~~q 471 (687)
++++++||.||++|.+|
T Consensus 237 ~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 237 LIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred HHHHHHHHHHHHhhcCc
Confidence 99999999999999886
No 13
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=100.00 E-value=1.5e-31 Score=292.00 Aligned_cols=232 Identities=17% Similarity=0.229 Sum_probs=181.0
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChH
Q 041566 230 EDYPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKA 309 (687)
Q Consensus 230 ~~~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa 309 (687)
...|+|||+||+|||++.+++||+|+++|+||+ +||+|+||+++|.+.+++++..+++++..++++...++...++|.
T Consensus 38 ~~~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~ 115 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDEPELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKV 115 (373)
T ss_pred CCCCCeEEEEECCCCChhHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHH
Confidence 347899999999999999999999999999997 889999999999999999887766554444444222222334699
Q ss_pred hHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhh
Q 041566 310 GNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQV 389 (687)
Q Consensus 310 ~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~ 389 (687)
+|++.+++ .+++|+++++|||+.++||+|++++..|+ +|++++|++..... ..+++.++.........+......
T Consensus 116 ~~l~~~~~---~a~ge~i~~~DaD~~~~p~~L~~lv~~~~-~~~v~~V~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 190 (373)
T TIGR03472 116 SNLINMLP---HARHDILVIADSDISVGPDYLRQVVAPLA-DPDVGLVTCLYRGR-PVPGFWSRLGAMGINHNFLPSVMV 190 (373)
T ss_pred HHHHHHHH---hccCCEEEEECCCCCcChhHHHHHHHHhc-CCCcceEeccccCC-CCCCHHHHHHHHHhhhhhhHHHHH
Confidence 99999888 78999999999999999999999999997 69999999864432 234566655443222212111111
Q ss_pred ccccccccccccceEEEehhhhhhhCCCCC--CCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHHHHhhc
Q 041566 390 NGVFINFFGFNGTAGVWRIKALEECGGWLD--RTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWHS 467 (687)
Q Consensus 390 ~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~--~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~ 467 (687)
....+......|+++++||++++++|||++ +..+||.+++.++.++|+++.+.+++...+..++|++++++||.||.+
T Consensus 191 ~~~~~~~~~~~G~~~a~RR~~l~~iGGf~~~~~~~~ED~~l~~~i~~~G~~v~~~~~~v~~~~~~~s~~~~~~q~~RW~r 270 (373)
T TIGR03472 191 ARALGRARFCFGATMALRRATLEAIGGLAALAHHLADDYWLGELVRALGLRVVLAPVVVDTDVHETSFATLLAHELRWSR 270 (373)
T ss_pred HHhccCCccccChhhheeHHHHHHcCChHHhcccchHHHHHHHHHHHcCCeEEecchhhhcCCCccCHHHHHHHHHHHHh
Confidence 111112222579999999999999999985 556899999999999999999999888888888999999999999987
Q ss_pred c
Q 041566 468 G 468 (687)
Q Consensus 468 G 468 (687)
+
T Consensus 271 ~ 271 (373)
T TIGR03472 271 T 271 (373)
T ss_pred h
Confidence 5
No 14
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=100.00 E-value=4.1e-31 Score=305.33 Aligned_cols=281 Identities=20% Similarity=0.197 Sum_probs=206.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-c---cCcccccCCCCCCCCCCCCCCCCeEEEEeecCCchHHHHHHHHHHH-cC
Q 041566 184 TCIVLFLIQSLDRLVLVIGCAWIKFK-K---VKPKAAMAYPVGKGDDEDLEDYPMVLVQIPMCNEREVYGQSIAAVC-IQ 258 (687)
Q Consensus 184 ~~l~l~li~~i~~li~~~~~~~~~~~-~---~r~~~~~~~~~~~~~~~~~~~~P~VsViIP~yNE~~~l~~tL~Sl~-~q 258 (687)
+..+++++..++.+++-..++..... + .++.++ ++.++.+++..|+|+|+||+|||+.++.+++++++ ++
T Consensus 15 ~~~~~~~~~~~ddl~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~vsIlVPa~nE~~vi~~~i~~ll~~l 89 (727)
T PRK11234 15 TLAVLMFISGLDDLFIDVVYWVRRIKRKLSVYRRYPR-----MSYRELYKPDEKPLAIMVPAWNETGVIGNMAELAATTL 89 (727)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhcccCC-----CChhhcccCCCCCEEEEEecCcchhhHHHHHHHHHHhC
Confidence 34455666677777776654332111 1 111111 12233345667899999999999999999999987 79
Q ss_pred CCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccc------cCCccEEEEEcC
Q 041566 259 DWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDY------VKDYEFVAIFDA 332 (687)
Q Consensus 259 ~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~------~a~~d~V~~lDa 332 (687)
+||+ ++|++++|.+|+.|.+.+++.++++++ ++++...++ .++||++|||.+++... ..++++++++||
T Consensus 90 dYP~--~eI~vi~~~nD~~T~~~~~~l~~~~p~--~~~v~~~~~-g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DA 164 (727)
T PRK11234 90 DYEN--YHIFVGTYPNDPATQADVDAVCARFPN--VHKVVCARP-GPTSKADCLNNVLDAITQFERSANFAFAGFILHDA 164 (727)
T ss_pred CCCC--eEEEEEecCCChhHHHHHHHHHHHCCC--cEEEEeCCC-CCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcC
Confidence 9997 889999999999999999988876543 455544443 35579999999998420 124578999999
Q ss_pred CCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCC-CChhHHhhhhhhhhhHHHHHhhccccccccccccceEEE-eh--
Q 041566 333 DFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKD-ENLLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVW-RI-- 408 (687)
Q Consensus 333 D~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~-Rr-- 408 (687)
|+.++||+|+ .+..+.+ +. ++||++....+.+ ..+.+..+..++...+..........+...++.|+++++ ||
T Consensus 165 D~~v~pd~L~-~~~~l~~-~~-~~VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l 241 (727)
T PRK11234 165 EDVISPMELR-LFNYLVE-RK-DLIQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV 241 (727)
T ss_pred CCCCChhHHH-HHHhhcC-CC-CeEeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH
Confidence 9999999998 6677764 55 8999975533322 244666666777655544433333443445689999999 77
Q ss_pred hhhhhhC---CCCCCCccchHHHHHHHHHcCCeEEEEc------c-----------------eEEeeccCcCHHHHHHHH
Q 041566 409 KALEECG---GWLDRTTVEDMDIAVRAHLCGWKFVYVN------D-----------------VKCLCELPESYEAYKKQQ 462 (687)
Q Consensus 409 ~aL~~iG---Gf~~~~~~ED~~l~~rl~~~G~ri~~~~------~-----------------a~~~~e~P~t~~~~~~Qr 462 (687)
+++.+.| +|+.++++||++++.++..+||++.|.| + +.++++.|+|+++..+||
T Consensus 242 ~al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR 321 (727)
T PRK11234 242 TALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQK 321 (727)
T ss_pred HHHHHhcCCCCcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHHHH
Confidence 5788888 6999999999999999999999999998 1 447889999999999999
Q ss_pred HHhhcc-cHHHHHHHh
Q 041566 463 HRWHSG-PMQLFRMCF 477 (687)
Q Consensus 463 ~RW~~G-~~q~~~~~~ 477 (687)
.||..| .+|.++...
T Consensus 322 ~RW~~G~~~q~~~~~~ 337 (727)
T PRK11234 322 SRWIIGIVFQGFKTLG 337 (727)
T ss_pred HHHHcccHHHHHHHhC
Confidence 999999 588876544
No 15
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=100.00 E-value=3.4e-32 Score=276.28 Aligned_cols=231 Identities=34% Similarity=0.488 Sum_probs=186.4
Q ss_pred CeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhH
Q 041566 233 PMVLVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGN 311 (687)
Q Consensus 233 P~VsViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~a 311 (687)
|+|+|+||+|||+ +.++++|+|+++|+||+++++|+||||+|+|.+.+++++...++ ++.+..+..+.|+|+++
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 75 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEY-----GYRYLTRPDNRHAKAGN 75 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhccc-----CceEEEeCCCCCCcHHH
Confidence 6899999999986 78999999999999998778999999999999999888654321 33444556677889999
Q ss_pred HHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCC-hhHHhhhhhhhhhHHHHHhhc
Q 041566 312 LNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDEN-LLTRLQNINLSFHFEVEQQVN 390 (687)
Q Consensus 312 Ln~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~-~~~r~~~~~~~~~~~~~~~~~ 390 (687)
+|.|++ .+++|||+++|+|+.++|+++++++..+.++|++++|++...+.+.+.. +..+.................
T Consensus 76 ~n~~~~---~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (234)
T cd06421 76 LNNALA---HTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGR 152 (234)
T ss_pred HHHHHH---hCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999 6799999999999999999999999999977999999998776655432 122211111111111111111
Q ss_pred cccccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHHHHhhcccH
Q 041566 391 GVFINFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWHSGPM 470 (687)
Q Consensus 391 ~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~G~~ 470 (687)
.. .....++|+++++||++++++|||++....||++++.++.++||++.++|++.++++.|.+++.+++|+.||..|.+
T Consensus 153 ~~-~~~~~~~g~~~~~r~~~~~~ig~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~~~~~~~~~~q~~rw~~~~~ 231 (234)
T cd06421 153 DR-WGAAFCCGSGAVVRREALDEIGGFPTDSVTEDLATSLRLHAKGWRSVYVPEPLAAGLAPETLAAYIKQRLRWARGML 231 (234)
T ss_pred hh-cCCceecCceeeEeHHHHHHhCCCCccceeccHHHHHHHHHcCceEEEecCccccccCCccHHHHHHHHHHHhcCCe
Confidence 11 12233689999999999999999998888999999999999999999999999999999999999999999999987
Q ss_pred HH
Q 041566 471 QL 472 (687)
Q Consensus 471 q~ 472 (687)
++
T Consensus 232 ~~ 233 (234)
T cd06421 232 QI 233 (234)
T ss_pred ee
Confidence 64
No 16
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=100.00 E-value=6.1e-32 Score=275.51 Aligned_cols=233 Identities=27% Similarity=0.471 Sum_probs=184.0
Q ss_pred EEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHH-HHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHH
Q 041566 236 LVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQ-LLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLN 313 (687)
Q Consensus 236 sViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~-~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn 313 (687)
||+||+|||+ +.++++|+|+.+|+||+ +||+||||+|+|.+. +.+++.+++ .+.++.++...++.|+|++|+|
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~--~eiiVvdd~s~D~t~~~~i~~~~~~---~~~~i~~i~~~~~~G~~~~a~n 75 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPN--FEVIVIDNNTKDEALWKPVEAHCAQ---LGERFRFFHVEPLPGAKAGALN 75 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCC--cEEEEEeCCCCchhHHHHHHHHHHH---hCCcEEEEEcCCCCCCchHHHH
Confidence 6999999998 89999999999999986 789999999998874 555555443 2334555555556777999999
Q ss_pred HHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhcccc
Q 041566 314 SAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVF 393 (687)
Q Consensus 314 ~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 393 (687)
.|++.. ..++|||+++|+|++++|++|.+++..++ +|++++|+++....+...+++.+.....+...+........ .
T Consensus 76 ~g~~~a-~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 152 (236)
T cd06435 76 YALERT-APDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRN-E 152 (236)
T ss_pred HHHHhc-CCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhcccc-c
Confidence 999942 13489999999999999999999999997 69999999876555544455544333222222221111111 1
Q ss_pred ccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHHHHhhcccHHHH
Q 041566 394 INFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWHSGPMQLF 473 (687)
Q Consensus 394 ~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~G~~q~~ 473 (687)
......+|+++++||++++++|||++....||.+++.|+.++||++.++|++.+++..|+++.++.+||.||..|.+|.+
T Consensus 153 ~~~~~~~g~~~~~rr~~~~~iGgf~~~~~~eD~dl~~r~~~~G~~~~~~~~~~~~~~~~~~~~~~~~q~~rw~~g~~~~~ 232 (236)
T cd06435 153 RNAIIQHGTMCLIRRSALDDVGGWDEWCITEDSELGLRMHEAGYIGVYVAQSYGHGLIPDTFEAFKKQRFRWAYGAVQIL 232 (236)
T ss_pred cCceEEecceEEEEHHHHHHhCCCCCccccchHHHHHHHHHCCcEEEEcchhhccCcCcccHHHHHHHHHHHhcchhhhh
Confidence 12223579999999999999999998888999999999999999999999999999999999999999999999999998
Q ss_pred HHH
Q 041566 474 RMC 476 (687)
Q Consensus 474 ~~~ 476 (687)
++|
T Consensus 233 ~~~ 235 (236)
T cd06435 233 KKH 235 (236)
T ss_pred hcc
Confidence 776
No 17
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=100.00 E-value=1.7e-33 Score=285.36 Aligned_cols=228 Identities=29% Similarity=0.453 Sum_probs=158.8
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHH
Q 041566 233 PMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNL 312 (687)
Q Consensus 233 P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aL 312 (687)
|+|+|+||+|||++.+.++|+|+++|+||+ ++|+|+||++++++.+.+++..++++..+++++...+..+.++|++++
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~~~~~--~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~ 78 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQDYPR--LEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARAL 78 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTSHHHT--EEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCCCC--eEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHH
Confidence 789999999999999999999999999964 899999999999998888877776664455544332222223699999
Q ss_pred HHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccc
Q 041566 313 NSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGV 392 (687)
Q Consensus 313 n~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~ 392 (687)
|.|++ ..++|+|+++|+|+.++|++|++++..| .+|++++|++.....+ ++++++..+...+...+.........
T Consensus 79 n~~~~---~~~~d~i~~lD~D~~~~p~~l~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (228)
T PF13641_consen 79 NEALA---AARGDYILFLDDDTVLDPDWLERLLAAF-ADPGVGAVGGPVFPDN-DRNWLTRLQDLFFARWHLRFRSGRRA 153 (228)
T ss_dssp HHHHH---H---SEEEEE-SSEEE-CHHHHHHHHHH-HBSS--EEEEEEEETT-CCCEEEE-TT--S-EETTTS-TT-B-
T ss_pred HHHHH---hcCCCEEEEECCCcEECHHHHHHHHHHH-HhCCCCeEeeeEeecC-CCCHHHHHHHHHHhhhhhhhhhhhcc
Confidence 99999 6789999999999999999999999999 4699999999886654 56666666554332222211222222
Q ss_pred cccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHHHHhhcc
Q 041566 393 FINFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWHSG 468 (687)
Q Consensus 393 ~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~G 468 (687)
. ...+++|+++++||++++++|||++...+||.+++.++.++||++.|+|++.++++.|.+++++.+||.||.+|
T Consensus 154 ~-~~~~~~G~~~~~rr~~~~~~g~fd~~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 154 L-GVAFLSGSGMLFRRSALEEVGGFDPFILGEDFDLCLRLRAAGWRIVYAPDALVYHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp ----S-B--TEEEEEHHHHHHH-S--SSSSSHHHHHHHHHHHTT--EEEEEEEEEEE--SSSTHHHHHHHHHHH--
T ss_pred c-ceeeccCcEEEEEHHHHHHhCCCCCCCcccHHHHHHHHHHCCCcEEEECCcEEEEeCCCCHHHHHHHHhccCcC
Confidence 2 33447899999999999999999997789999999999999999999999999999999999999999999987
No 18
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=100.00 E-value=1.9e-32 Score=281.79 Aligned_cols=205 Identities=20% Similarity=0.243 Sum_probs=175.5
Q ss_pred EEeecCCch-HHHHHHHHHHHcCCCC--------CCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCC
Q 041566 237 VQIPMCNER-EVYGQSIAAVCIQDWP--------KERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGY 307 (687)
Q Consensus 237 ViIP~yNE~-~~l~~tL~Sl~~q~yP--------~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~gg 307 (687)
|+||+|||+ .+|+++|+|+++|+|| .+++||+|+||||+| .+ .|
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d--------------------------~~-~g 53 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK--------------------------KN-RG 53 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc--------------------------cc-Cc
Confidence 689999997 8999999999999999 678999999999999 11 22
Q ss_pred hHh-------HHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhh
Q 041566 308 KAG-------NLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLS 380 (687)
Q Consensus 308 Ka~-------aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~ 380 (687)
|.. ++|.++. .+++|||+++|||++++|++|++++..|..+|++++|+|.....+...++++..|.+++.
T Consensus 54 k~~~~~~~~~~~~~~~~---~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey~ 130 (244)
T cd04190 54 KRDSQLWFFNYFCRVLF---PDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEYA 130 (244)
T ss_pred chHHHHHHHHHHHHHhh---cCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheehh
Confidence 443 3455555 679999999999999999999999999977899999999988888777899999998886
Q ss_pred hhHHHHHhhccccccccccccceEEEehhhhhhhCCCCC--------------------CCccchHHHHHHHHHcCCeEE
Q 041566 381 FHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECGGWLD--------------------RTTVEDMDIAVRAHLCGWKFV 440 (687)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~--------------------~~~~ED~~l~~rl~~~G~ri~ 440 (687)
......+...+.++...+++|++++||++++++.|++.. ..++||.+++.++..+||++.
T Consensus 131 ~~~~~~~~~~s~~g~~~~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~ 210 (244)
T cd04190 131 ISHWLDKAFESVFGFVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRK 210 (244)
T ss_pred hhhhhcccHHHcCCceEECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccE
Confidence 554444444555666777899999999999999876533 236899999999999999999
Q ss_pred E--EcceEEeeccCcCHHHHHHHHHHhhcccHH
Q 041566 441 Y--VNDVKCLCELPESYEAYKKQQHRWHSGPMQ 471 (687)
Q Consensus 441 ~--~~~a~~~~e~P~t~~~~~~Qr~RW~~G~~q 471 (687)
| +|++.++++.|+|++++++||.||.+|.+.
T Consensus 211 ~~~~~~a~~~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 211 YLYVPGAVAETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred EEEecccEEEEECCCCHHHHHHHhHhhhccccc
Confidence 9 999999999999999999999999999763
No 19
>PLN02189 cellulose synthase
Probab=99.97 E-value=6.7e-30 Score=293.53 Aligned_cols=260 Identities=18% Similarity=0.304 Sum_probs=195.1
Q ss_pred CCCCeEEEEeecCCc---h-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH--------------------
Q 041566 230 EDYPMVLVQIPMCNE---R-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAE-------------------- 285 (687)
Q Consensus 230 ~~~P~VsViIP~yNE---~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~-------------------- 285 (687)
+.+|.|+|+|++-+. + -...+|+.|+++.|||.+|+.++|.|||.+..|.+.+.+.
T Consensus 328 ~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRa 407 (1040)
T PLN02189 328 NMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRA 407 (1040)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCC
Confidence 469999999999764 4 5678999999999999999999999999977762222111
Q ss_pred -------------------------------------HH----H---Hh----------------------------h--
Q 041566 286 -------------------------------------VL----K---WQ----------------------------Q-- 291 (687)
Q Consensus 286 -------------------------------------~~----~---~~----------------------------~-- 291 (687)
++ + .+ +
T Consensus 408 Pe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQVll~~~ 487 (1040)
T PLN02189 408 PEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQVFLGHS 487 (1040)
T ss_pred HHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccceeccCccCCCCCCCCCHHHHHHHhcCC
Confidence 00 0 00 0
Q ss_pred -----cC---cEEEEEeccCCCC----ChHhHHHHHhccc-ccCCccEEEEEcCCCCC-CHHHHHHHHHHHccCC----C
Q 041566 292 -----RG---VHIIYRHRLIRSG----YKAGNLNSAMGCD-YVKDYEFVAIFDADFQP-TPDFLKKTIPYFKGND----D 353 (687)
Q Consensus 292 -----~~---v~i~~~~r~~~~g----gKa~aLn~gl~~~-~~a~~d~V~~lDaD~~~-~pd~L~~lv~~f~~~p----~ 353 (687)
.+ ++++|+.|+++.| .||||||..++.+ ...+++||+.+|+|+.+ +|+.+++++++|. || +
T Consensus 488 ~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCffl-Dp~~g~~ 566 (1040)
T PLN02189 488 GGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLM-DPQIGRK 566 (1040)
T ss_pred CCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhc-CCccCce
Confidence 00 3489999988755 7999999999865 46899999999999988 5799999999999 47 8
Q ss_pred eEEEeeeeeeccCCCC-hhHHhhhhhhhhhHHHHHhhccccccccccccceEEEehhhhhhh------------------
Q 041566 354 LALVQTRWSFVNKDEN-LLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEEC------------------ 414 (687)
Q Consensus 354 vg~Vqg~~~~~n~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~i------------------ 414 (687)
++.||.+|.|.|.+.+ .+..-..+.+. ...+..++..+.+ +.||++++||++|-..
T Consensus 567 vAfVQFPQrF~~i~k~D~Ygn~~~vffd---i~~~GlDGlqGP~--YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~~~ 641 (1040)
T PLN02189 567 VCYVQFPQRFDGIDTHDRYANRNTVFFD---INMKGLDGIQGPV--YVGTGCVFRRQALYGYDPPKGPKRPKMVTCDCCP 641 (1040)
T ss_pred eEEEeCccccCCCCCCCccCCccceeee---eeecccccCCCcc--ccccCceeeeeeeeccCcccccccccccccchhh
Confidence 9999999999887653 12111111111 1223334443333 7899999999877521
Q ss_pred --------------------------------------------------------------------------------
Q 041566 415 -------------------------------------------------------------------------------- 414 (687)
Q Consensus 415 -------------------------------------------------------------------------------- 414 (687)
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE 721 (1040)
T PLN02189 642 CFGRRKKKHAKNGLNGEVAALGGMESDKEMLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYE 721 (1040)
T ss_pred hcccccccccccccccccccccccchhhhhhhhhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccc
Confidence
Q ss_pred -----C---CCCCCCccchHHHHHHHHHcCCeEEEEc--ceEEeeccCcCHHHHHHHHHHhhcccHHHHH-HHhHHHh--
Q 041566 415 -----G---GWLDRTTVEDMDIAVRAHLCGWKFVYVN--DVKCLCELPESYEAYKKQQHRWHSGPMQLFR-MCFIDII-- 481 (687)
Q Consensus 415 -----G---Gf~~~~~~ED~~l~~rl~~~G~ri~~~~--~a~~~~e~P~t~~~~~~Qr~RW~~G~~q~~~-~~~~~~l-- 481 (687)
| ||..++++||+.++++++.+|||.+|+. .+.+.+.+|+++.+++.||.||+.|.+|+++ ++.|.+.
T Consensus 722 ~~T~WG~evGw~YGSvTED~~TG~rlH~rGWrSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~ 801 (1040)
T PLN02189 722 DKTDWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGY 801 (1040)
T ss_pred cCCchhhccCeeccccccHHHHHHHHHccCCceEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCcccccc
Confidence 0 3445567999999999999999999995 3457899999999999999999999999987 5555443
Q ss_pred -hcCCcHHHHHHHHH
Q 041566 482 -RSKVSWAKKANLIF 495 (687)
Q Consensus 482 -~~~l~~~~k~~~~~ 495 (687)
+.++++.+++.++.
T Consensus 802 ~~~~L~l~QRL~Yl~ 816 (1040)
T PLN02189 802 KGGNLKWLERFAYVN 816 (1040)
T ss_pred CCCCCCHHHHHHHHH
Confidence 24688888877653
No 20
>PLN02195 cellulose synthase A
Probab=99.97 E-value=6.7e-30 Score=292.11 Aligned_cols=261 Identities=18% Similarity=0.290 Sum_probs=193.3
Q ss_pred CCCCCeEEEEeecCCc---h-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH-------------------
Q 041566 229 LEDYPMVLVQIPMCNE---R-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAE------------------- 285 (687)
Q Consensus 229 ~~~~P~VsViIP~yNE---~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~------------------- 285 (687)
++++|.|+|+|++-+. + -...+|+.|+++.|||.+|+.++|.|||.+..|.+.+.+.
T Consensus 248 ~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepR 327 (977)
T PLN02195 248 PSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPFCKKYSIEPR 327 (977)
T ss_pred cccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcC
Confidence 3569999999999764 3 5678999999999999999999999999877762221111
Q ss_pred ------------------------------------------HHH---Hh-----------------------------h
Q 041566 286 ------------------------------------------VLK---WQ-----------------------------Q 291 (687)
Q Consensus 286 ------------------------------------------~~~---~~-----------------------------~ 291 (687)
.++ .+ +
T Consensus 328 aPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp~IIqVll~~ 407 (977)
T PLN02195 328 APEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHPGMIQVFLGE 407 (977)
T ss_pred CHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCCCcchhhhhccC
Confidence 000 00 0
Q ss_pred ---------cCcEEEEEeccCCCC----ChHhHHHHHhccc-ccCCccEEEEEcCCCCC-CHHHHHHHHHHHccCC----
Q 041566 292 ---------RGVHIIYRHRLIRSG----YKAGNLNSAMGCD-YVKDYEFVAIFDADFQP-TPDFLKKTIPYFKGND---- 352 (687)
Q Consensus 292 ---------~~v~i~~~~r~~~~g----gKa~aLn~gl~~~-~~a~~d~V~~lDaD~~~-~pd~L~~lv~~f~~~p---- 352 (687)
.=++++|+.|+++.| .||||||.+++.+ ...+++||+.+|||+.+ +++++++++++|. ||
T Consensus 408 ~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~-D~~~g~ 486 (977)
T PLN02195 408 TGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLM-DPVVGR 486 (977)
T ss_pred CCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhcc-CcccCC
Confidence 014688998888755 7999999999865 36789999999999977 5589999999998 47
Q ss_pred CeEEEeeeeeeccCCCC-hhHHhhhhhhhhhHHHHHhhccccccccccccceEEEehhhhhhhC----------------
Q 041566 353 DLALVQTRWSFVNKDEN-LLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECG---------------- 415 (687)
Q Consensus 353 ~vg~Vqg~~~~~n~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iG---------------- 415 (687)
+++.||.+|.|.|.+.+ .+.......+... .+..++..+.+ +.||++++||++|-..+
T Consensus 487 ~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~---~~g~dglqGP~--YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~~ 561 (977)
T PLN02195 487 DVCYVQFPQRFDGIDRSDRYANRNVVFFDVN---MKGLDGIQGPV--YVGTGCVFNRQALYGYGPPSLPRLPKSSSSSSS 561 (977)
T ss_pred eeEEEcCCcccCCCCCCCCCCcccceeeeee---eccccccCCcc--ccccCceeeehhhhccCcccccccccccccccc
Confidence 78899999999887652 2222222222111 22223333222 68999999998876321
Q ss_pred --------------------------------------------------------------------------------
Q 041566 416 -------------------------------------------------------------------------------- 415 (687)
Q Consensus 416 -------------------------------------------------------------------------------- 415 (687)
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~ 641 (977)
T PLN02195 562 CCCPTKKKPEQDPSEIYRDAKREDLNAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPESANPS 641 (977)
T ss_pred ccccccccccccchhhccccccccccccccccccccccchhhhhhhhhhhHHHHhhcccHHHHHHHHHHhcCCCCCCCcH
Confidence
Q ss_pred ------------------------CCCCCCccchHHHHHHHHHcCCeEEEEcce--EEeeccCcCHHHHHHHHHHhhccc
Q 041566 416 ------------------------GWLDRTTVEDMDIAVRAHLCGWKFVYVNDV--KCLCELPESYEAYKKQQHRWHSGP 469 (687)
Q Consensus 416 ------------------------Gf~~~~~~ED~~l~~rl~~~G~ri~~~~~a--~~~~e~P~t~~~~~~Qr~RW~~G~ 469 (687)
||..++++||+.++++++.+|||.+|++.. .+.+.+|+++.+++.||.||+.|.
T Consensus 642 ~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L~Qr~RWA~G~ 721 (977)
T PLN02195 642 TLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWALGS 721 (977)
T ss_pred HHHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHHHHHHHHHhch
Confidence 233345789999999999999999999754 468999999999999999999999
Q ss_pred HHHHH-HHhHHHh---hcCCcHHHHHHHHH
Q 041566 470 MQLFR-MCFIDII---RSKVSWAKKANLIF 495 (687)
Q Consensus 470 ~q~~~-~~~~~~l---~~~l~~~~k~~~~~ 495 (687)
+|+++ ++.|.+. ..++++.+++.++.
T Consensus 722 lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl~ 751 (977)
T PLN02195 722 VEIFLSRHCPLWYGYGGGRLKWLQRLAYIN 751 (977)
T ss_pred hhhhhccCCccccccCCCCCCHHHHHHHHH
Confidence 99987 4445442 14788899887653
No 21
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.97 E-value=3.9e-31 Score=262.57 Aligned_cols=193 Identities=19% Similarity=0.276 Sum_probs=166.6
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHH
Q 041566 233 PMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNL 312 (687)
Q Consensus 233 P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aL 312 (687)
|.|||+||+|||++.+.++|+|+.+|+||+ +||+||||+|+|++.+.+++...+++...++++...+....++|++++
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNL 78 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHH
Confidence 679999999999999999999999999987 889999999999999988877665433233333222222233688899
Q ss_pred HHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccc
Q 041566 313 NSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGV 392 (687)
Q Consensus 313 n~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~ 392 (687)
|.|++ .+++||++++|+|+.++|++|++++..+. +|++++|++.
T Consensus 79 n~g~~---~a~~d~i~~~D~D~~~~~~~l~~l~~~~~-~~~~~~v~~~-------------------------------- 122 (196)
T cd02520 79 IKGYE---EARYDILVISDSDISVPPDYLRRMVAPLM-DPGVGLVTCL-------------------------------- 122 (196)
T ss_pred HHHHH---hCCCCEEEEECCCceEChhHHHHHHHHhh-CCCCCeEEee--------------------------------
Confidence 99999 68999999999999999999999999986 5899999886
Q ss_pred cccccccccceEEEehhhhhhhCCCCC--CCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHHHHhhcc
Q 041566 393 FINFFGFNGTAGVWRIKALEECGGWLD--RTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWHSG 468 (687)
Q Consensus 393 ~~~~~~~~G~~~~~Rr~aL~~iGGf~~--~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~G 468 (687)
+..|+++++|+++++++|||+. ....||++++.++.++||++.++|++.++++.|.+++++++||.||.+.
T Consensus 123 -----~~~g~~~~~r~~~~~~~ggf~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~~~~~~~~~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 123 -----CAFGKSMALRREVLDAIGGFEAFADYLAEDYFLGKLIWRLGYRVVLSPYVVMQPLGSTSLASFWRRQLRWSRT 195 (196)
T ss_pred -----cccCceeeeEHHHHHhccChHHHhHHHHHHHHHHHHHHHcCCeEEEcchheeccCCcccHHHHHHHHHHHhcc
Confidence 2578999999999999999975 2458999999999999999999999999999999999999999999874
No 22
>PLN02248 cellulose synthase-like protein
Probab=99.97 E-value=2.1e-29 Score=290.00 Aligned_cols=197 Identities=20% Similarity=0.326 Sum_probs=147.3
Q ss_pred cEEEEEeccCCCC----ChHhHHHHHhccc-ccCCccEEEEEcCCCCC-CHHHHHHHHHHHcc--CCCeEEEeeeeeecc
Q 041566 294 VHIIYRHRLIRSG----YKAGNLNSAMGCD-YVKDYEFVAIFDADFQP-TPDFLKKTIPYFKG--NDDLALVQTRWSFVN 365 (687)
Q Consensus 294 v~i~~~~r~~~~g----gKa~aLn~gl~~~-~~a~~d~V~~lDaD~~~-~pd~L~~lv~~f~~--~p~vg~Vqg~~~~~n 365 (687)
++++|+.|+++.| .||||||..++.+ ...+++||+.+|||+.+ +++.+++.+++|.+ +++++.||.+|.|.|
T Consensus 585 P~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~g~~vAfVQFPQrF~~ 664 (1135)
T PLN02248 585 PMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRGGDRICYVQFPQRFEG 664 (1135)
T ss_pred ceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCCCCceEEEcCCcccCC
Confidence 3467888887644 7999999999865 46899999999999987 67899999999995 379999999999988
Q ss_pred CCCC-hhHHhhhhhhhhhHHHHHhhccccccccccccceEEEehhhhhhh------------------------------
Q 041566 366 KDEN-LLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEEC------------------------------ 414 (687)
Q Consensus 366 ~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~i------------------------------ 414 (687)
.+.+ .+..-....+. ...+..++..+.+ ++||++++||++|-..
T Consensus 665 I~k~D~Ygn~~~Vffd---i~~~GlDGlqGP~--YvGTGCffRR~ALYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 739 (1135)
T PLN02248 665 IDPSDRYANHNTVFFD---VNMRALDGLQGPV--YVGTGCLFRRIALYGFDPPRAKEHSGCFGSCKFTKKKKKETSASEP 739 (1135)
T ss_pred CCCCCccCCcceeeee---eeeccccccCCcc--ccccCceeeehhhcCcCCcccccccccccccccccccccccccccc
Confidence 7653 11111111111 1223333443333 6899999999877531
Q ss_pred --------------------------------------------------------------------------------
Q 041566 415 -------------------------------------------------------------------------------- 414 (687)
Q Consensus 415 -------------------------------------------------------------------------------- 414 (687)
T Consensus 740 ~~~~~~~~~~~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE 819 (1135)
T PLN02248 740 EEQPDLEDDDDLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAISVISCWYE 819 (1135)
T ss_pred cccccccccchhhhhhhhhhhccchhhhhhhHHHhhcccccccccccccccccccccccccCCcHHHHHHHHhhcccccc
Confidence
Q ss_pred -----C---CCCCCCccchHHHHHHHHHcCCeEEEEc--ceEEeeccCcCHHHHHHHHHHhhcccHHHHHHHhHHHh-hc
Q 041566 415 -----G---GWLDRTTVEDMDIAVRAHLCGWKFVYVN--DVKCLCELPESYEAYKKQQHRWHSGPMQLFRMCFIDII-RS 483 (687)
Q Consensus 415 -----G---Gf~~~~~~ED~~l~~rl~~~G~ri~~~~--~a~~~~e~P~t~~~~~~Qr~RW~~G~~q~~~~~~~~~l-~~ 483 (687)
| ||..++++||+.++++++.+|||.+|++ ...+.+.+|+++.+++.||.||+.|.+|+++.....++ ..
T Consensus 820 ~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll~~~ 899 (1135)
T PLN02248 820 DKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASR 899 (1135)
T ss_pred cCCchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhhchHHHHhccCCccccCC
Confidence 0 2333457899999999999999999984 34467999999999999999999999999875443333 35
Q ss_pred CCcHHHHHHHHH
Q 041566 484 KVSWAKKANLIF 495 (687)
Q Consensus 484 ~l~~~~k~~~~~ 495 (687)
++++.+++.++.
T Consensus 900 ~Lsl~QRL~Yl~ 911 (1135)
T PLN02248 900 RLKFLQRIAYLN 911 (1135)
T ss_pred CCCHHHHHHHHH
Confidence 899999987653
No 23
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.97 E-value=2.1e-29 Score=278.15 Aligned_cols=361 Identities=16% Similarity=0.232 Sum_probs=245.3
Q ss_pred CCCCCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCC------CChhHHHHHHHHHHHHh-----------
Q 041566 229 LEDYPMVLVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDS------DDLDVQLLIKAEVLKWQ----------- 290 (687)
Q Consensus 229 ~~~~P~VsViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~------s~d~t~~~l~~~~~~~~----------- 290 (687)
+...+.+..+||||||. +.+++||+|+..++||+.+-.++||.|| .+..|.+++.+......
T Consensus 21 ~~~~~~~i~~v~cy~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~~~~ 100 (527)
T PF03142_consen 21 EFPDKFVICLVPCYSEGEEELRTTLDSLATTDYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEPLSY 100 (527)
T ss_pred CCCCceEEEEEccccCChHHHHHHHHHHHhcCCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCCcce
Confidence 44566788999999998 8999999999999999886667788776 36667777665433000
Q ss_pred ---------------------hcC-----------cEEEEEec----------cCCCCChHhHHHHHhc-----------
Q 041566 291 ---------------------QRG-----------VHIIYRHR----------LIRSGYKAGNLNSAMG----------- 317 (687)
Q Consensus 291 ---------------------~~~-----------v~i~~~~r----------~~~~ggKa~aLn~gl~----------- 317 (687)
..+ +..+.+.+ ++.+.||++.+-..+.
T Consensus 101 ~~~~~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~~~~ 180 (527)
T PF03142_consen 101 VSLGEGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFNNPM 180 (527)
T ss_pred EEeccCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcCCCC
Confidence 001 12222222 2334468875422211
Q ss_pred ---------------ccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhh
Q 041566 318 ---------------CDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFH 382 (687)
Q Consensus 318 ---------------~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~ 382 (687)
.......|||+.+|||+.++|+++.+++..|.+||++++|+|.....|...++++.+|.++|...
T Consensus 181 ~~~~~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i~n~~~s~~t~~Q~fEY~is 260 (527)
T PF03142_consen 181 TPLELELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRIDNKGQSWWTMYQVFEYAIS 260 (527)
T ss_pred chHHHHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEEcCCCCCHhhheeccchhHH
Confidence 01134579999999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHHhhccccccccccccceEEEehhhhhhhC--------------CCCC-----------CCccchHHHHHHHHHc--
Q 041566 383 FEVEQQVNGVFINFFGFNGTAGVWRIKALEECG--------------GWLD-----------RTTVEDMDIAVRAHLC-- 435 (687)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iG--------------Gf~~-----------~~~~ED~~l~~rl~~~-- 435 (687)
+...+..++.++.+.|++|++++||.++++.-. +|.+ ...+||..++..+.++
T Consensus 261 h~l~Ka~Es~fG~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~~dtlh~~nl~~lGEDR~LttLlLk~~~ 340 (527)
T PF03142_consen 261 HHLQKAFESVFGSVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENPVDTLHQKNLLDLGEDRWLTTLLLKQFP 340 (527)
T ss_pred HHHHHHHHHHhCceeecCCcceeeeeehhccccccccccccchHHHHHHhhccchHHHHHhhhhcchhHHHHHHHHhhCC
Confidence 999999999999999999999999999887611 1211 1358999999988887
Q ss_pred CCeEEEEcceEEeeccCcCHHHHHHHHHHhhcccHHHHHHHhHH-HhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041566 436 GWKFVYVNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRMCFID-IIRSKVSWAKKANLIFLFFLLRKLVLPFYSFTLFC 514 (687)
Q Consensus 436 G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~G~~q~~~~~~~~-~l~~~l~~~~k~~~~~~~~ll~~li~p~~~f~l~~ 514 (687)
|||+.|+|++.+++.+|+|++.+++||+||..|.+......... -+.....+..++-. ...++..++.|..+...+.
T Consensus 341 ~~k~~y~~~A~a~T~aP~t~~vflsQRRRWinSTi~Nl~eLl~~~~l~g~~~fsm~fvv--fi~Li~tiI~P~ti~~iIy 418 (527)
T PF03142_consen 341 GYKTEYVPSAVAYTDAPETFSVFLSQRRRWINSTIHNLFELLLVRDLCGFCCFSMRFVV--FIDLIGTIILPATIVFIIY 418 (527)
T ss_pred CceEEEcccccccccCCccHHHHHHHhhhccchhHhhHhHHHHhhhhcceeeecHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999998765433211 01111222222211 1234555666754433222
Q ss_pred -HHHHhhhhcccchhHHHHHHHHHHHHHH--HHhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccEEEeec
Q 041566 515 -IILPLTMFIPEAELPAWVVSYVPGFMSI--LNILPAPRSFPFIVPYLLFENTMSVTKFNAMISGLFRFGSSYEWIVTKK 591 (687)
Q Consensus 515 -~~~p~~~~~~~~~l~~~~~~~~p~~i~~--l~~~~~~~~~~~~~p~~lf~~~~s~~~~~A~i~gl~~~g~~~~w~vT~k 591 (687)
++..... ....+.+.++.++.+..+ +..+.+.+.+.++..+++|....++..+.-.++++.+.. ++.|+.|.+
T Consensus 419 lIv~~I~~---s~~~piIsLiLLAiIyGL~aIl~iL~~r~wq~i~wmiiYll~~P~~n~vLpiYSfwn~D-DFSWGtTR~ 494 (527)
T PF03142_consen 419 LIVVSIFS---SDPVPIISLILLAIIYGLPAILFILRSRRWQYIGWMIIYLLALPFFNFVLPIYSFWNFD-DFSWGTTRV 494 (527)
T ss_pred Hhheehcc---cccccchHHHHHHHHHHHHhhhheecccHHHHHHHHHHHHHHHHHHHhHhhheeEEEec-ccccCCeee
Confidence 2221111 111122222222211111 112233455666666666655566666666677777765 899999988
Q ss_pred CCCC
Q 041566 592 LGRS 595 (687)
Q Consensus 592 ~~~~ 595 (687)
...+
T Consensus 495 v~ge 498 (527)
T PF03142_consen 495 VVGE 498 (527)
T ss_pred eccc
Confidence 6544
No 24
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=99.97 E-value=7.7e-30 Score=293.87 Aligned_cols=261 Identities=17% Similarity=0.284 Sum_probs=193.6
Q ss_pred CCCCCeEEEEeecCCc---h-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH-------------------
Q 041566 229 LEDYPMVLVQIPMCNE---R-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAE------------------- 285 (687)
Q Consensus 229 ~~~~P~VsViIP~yNE---~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~------------------- 285 (687)
++++|.|+|+|++-+. + -...+|+.|+++.|||.+|+.++|.|||.+..|.+.+.+.
T Consensus 345 ~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepR 424 (1079)
T PLN02638 345 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 424 (1079)
T ss_pred cccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcC
Confidence 3569999999999764 4 5778999999999999999999999999977762222111
Q ss_pred --------------------------------------HH----H---Hh------------------------------
Q 041566 286 --------------------------------------VL----K---WQ------------------------------ 290 (687)
Q Consensus 286 --------------------------------------~~----~---~~------------------------------ 290 (687)
++ + .+
T Consensus 425 aPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~m~dgt~W~g~~~~dHp~IiqVll~~ 504 (1079)
T PLN02638 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGH 504 (1079)
T ss_pred CHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccccCCccCCCCCCCCCHHHHHHHhcC
Confidence 00 0 00
Q ss_pred ------h--cCcEEEEEeccCCCC----ChHhHHHHHhccc-ccCCccEEEEEcCCCCC-CHHHHHHHHHHHccCCC---
Q 041566 291 ------Q--RGVHIIYRHRLIRSG----YKAGNLNSAMGCD-YVKDYEFVAIFDADFQP-TPDFLKKTIPYFKGNDD--- 353 (687)
Q Consensus 291 ------~--~~v~i~~~~r~~~~g----gKa~aLn~gl~~~-~~a~~d~V~~lDaD~~~-~pd~L~~lv~~f~~~p~--- 353 (687)
+ .=++++|+.|++|.| .||||||..++.+ ..++++||+.+|+|+.+ +|+.+++++++|. ||+
T Consensus 505 ~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~l-Dp~~g~ 583 (1079)
T PLN02638 505 SGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLM-DPNLGK 583 (1079)
T ss_pred CCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhc-CcccCC
Confidence 0 013468999988755 7999999999865 46799999999999977 5999999999998 464
Q ss_pred -eEEEeeeeeeccCCCC-hhHHhhhhhhhhhHHHHHhhccccccccccccceEEEehhhhhhh-----------------
Q 041566 354 -LALVQTRWSFVNKDEN-LLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEEC----------------- 414 (687)
Q Consensus 354 -vg~Vqg~~~~~n~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~i----------------- 414 (687)
++.||.+|.|.|.+.+ .+..-....+. ...+..++..+.+ +.||++++||++|-..
T Consensus 584 ~vafVQFPQrF~~i~k~D~Ygn~~~vffd---i~~~GlDGlqGP~--YvGTGC~fRR~ALYG~~p~~~~~~~~~~~~~~~ 658 (1079)
T PLN02638 584 SVCYVQFPQRFDGIDRNDRYANRNTVFFD---INLRGLDGIQGPV--YVGTGCVFNRTALYGYEPPIKPKHKKPGFLSSL 658 (1079)
T ss_pred eeEEecCCcccCCCCCCCcccccceeeec---cccccccccCCcc--ccccCcceeehhhcCcCCccccccccccccccc
Confidence 8899999999887653 11111111111 1223334443333 6899999999887522
Q ss_pred -C------------------------------------------------------------------------------
Q 041566 415 -G------------------------------------------------------------------------------ 415 (687)
Q Consensus 415 -G------------------------------------------------------------------------------ 415 (687)
|
T Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~ 738 (1079)
T PLN02638 659 CGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGV 738 (1079)
T ss_pred ccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhhhhccccHHHHHHHHHhhcCC
Confidence 0
Q ss_pred -------------------------------CCCCCCccchHHHHHHHHHcCCeEEEE-cce-EEeeccCcCHHHHHHHH
Q 041566 416 -------------------------------GWLDRTTVEDMDIAVRAHLCGWKFVYV-NDV-KCLCELPESYEAYKKQQ 462 (687)
Q Consensus 416 -------------------------------Gf~~~~~~ED~~l~~rl~~~G~ri~~~-~~a-~~~~e~P~t~~~~~~Qr 462 (687)
||..++++||+.++++++.+|||.+|+ |+. .+.+.+|+++.+++.||
T Consensus 739 ~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~l~d~L~Qr 818 (1079)
T PLN02638 739 PQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQV 818 (1079)
T ss_pred CCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcEEecCCCchHhcCcCCCCHHHHHHHH
Confidence 133344789999999999999999999 433 36899999999999999
Q ss_pred HHhhcccHHHHH-HHhHHHh--hcCCcHHHHHHHHH
Q 041566 463 HRWHSGPMQLFR-MCFIDII--RSKVSWAKKANLIF 495 (687)
Q Consensus 463 ~RW~~G~~q~~~-~~~~~~l--~~~l~~~~k~~~~~ 495 (687)
.||+.|.+|+++ ++.|.+. ..++++.+++.++.
T Consensus 819 ~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~ 854 (1079)
T PLN02638 819 LRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVN 854 (1079)
T ss_pred HHHhhcchheeeccCCccccccCCCCCHHHHHHHHH
Confidence 999999999986 5556442 24789999887653
No 25
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.97 E-value=1.8e-28 Score=279.88 Aligned_cols=284 Identities=16% Similarity=0.153 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhccCcccccCCCCCCCCCCCCCCCCeEEEEeecCCchHHHHHHHHHHH-c
Q 041566 181 LGHTCIVLFLIQSLDRLVLVIGCAWIK--FKKVKPKAAMAYPVGKGDDEDLEDYPMVLVQIPMCNEREVYGQSIAAVC-I 257 (687)
Q Consensus 181 l~~~~l~l~li~~i~~li~~~~~~~~~--~~~~r~~~~~~~~~~~~~~~~~~~~P~VsViIP~yNE~~~l~~tL~Sl~-~ 257 (687)
+..+..+++++..++.+++-.. +|.+ +++.....+.. +++.++..+...|+++|+||+|||++++.++|++++ +
T Consensus 20 ~~~~~~~~~~i~~~ddl~~d~~-yw~r~~~r~~~~~~~~~--~~~~~~l~~~~~~~vsIlVPa~nE~~VI~~~v~~ll~~ 96 (703)
T PRK15489 20 AAVATALVILISSLDDLFIDAW-YWVRELYRWLTRERRYR--PLTAEQLRERDEQPLAIMVPAWKEYDVIAKMIENMLAT 96 (703)
T ss_pred HHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHhhhccccCC--CCChHHhcccCCCceEEEEeCCCcHHHHHHHHHHHHhc
Confidence 3344456667778888888774 3433 22111111111 122333345667899999999999999999999986 7
Q ss_pred CCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhccc----ccCCc--cEEEEEc
Q 041566 258 QDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCD----YVKDY--EFVAIFD 331 (687)
Q Consensus 258 q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~----~~a~~--d~V~~lD 331 (687)
++||+ ++|+|+.+.+|.+|.+.+++....++ .++++... ++.+.+|+.|||.+++.. ....+ +.|++.|
T Consensus 97 ldYp~--~~I~v~~~~nD~~T~~~~~~~~~~~p--~~~~v~~~-~~gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~D 171 (703)
T PRK15489 97 LDYRR--YVIFVGTYPNDAETITEVERMRRRYK--RLVRVEVP-HDGPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHD 171 (703)
T ss_pred CCCCC--eEEEEEecCCCccHHHHHHHHhccCC--cEEEEEcC-CCCCCCHHHHHHHHHHHHHhhhhhccCccceEEEEc
Confidence 89996 67888654445567777766554332 34444332 233457999999999742 11133 4499999
Q ss_pred CCCCCCHHHHHHHHHHHccCCCeEEEeeeee-eccCCCChhHHhhhhhhhhhHHHHHhhccccccccccccceEEEehhh
Q 041566 332 ADFQPTPDFLKKTIPYFKGNDDLALVQTRWS-FVNKDENLLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKA 410 (687)
Q Consensus 332 aD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~-~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~a 410 (687)
||+.++|+.|+.+ .++..++ .++|++.. ..|...+++++.+..+|+..+..........+...+..|++++|||++
T Consensus 172 AEd~~~P~~L~~~-~~~~~~~--~~iQ~pV~~~~~~~~~~l~~~~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~a 248 (703)
T PRK15489 172 SEDVLHPLELKYF-NYLLPRK--DLVQLPVLSLERKWYEWVAGTYMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRA 248 (703)
T ss_pred CCCCCChhHHHHH-HhhcCCc--ceeeeeeccCCCccccHHHHHHHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHH
Confidence 9999999999877 5555444 46887644 456667999999999998877754444433444456899999999999
Q ss_pred hhhh---CC---CCCCCccchHHHHHHHHHcCCeEEEEc-----------------------ceEEeeccCcCHHHHHHH
Q 041566 411 LEEC---GG---WLDRTTVEDMDIAVRAHLCGWKFVYVN-----------------------DVKCLCELPESYEAYKKQ 461 (687)
Q Consensus 411 L~~i---GG---f~~~~~~ED~~l~~rl~~~G~ri~~~~-----------------------~a~~~~e~P~t~~~~~~Q 461 (687)
++++ || |+.++++||.|++.|+.++||++.++- ...+.++.|.|+++..+|
T Consensus 249 L~~l~~~gg~~~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQ 328 (703)
T PRK15489 249 LLALMKERGNQPFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQ 328 (703)
T ss_pred HHHHHHhcCCCCCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHH
Confidence 9876 54 667788999999999999999999921 234677899999999999
Q ss_pred HHHhhcccH-HHHHH
Q 041566 462 QHRWHSGPM-QLFRM 475 (687)
Q Consensus 462 r~RW~~G~~-q~~~~ 475 (687)
|.||..|.. |.++.
T Consensus 329 k~RW~~Gi~~q~~~~ 343 (703)
T PRK15489 329 KARWVLGIAFQGWEQ 343 (703)
T ss_pred HHHHHhHHHHhhHHH
Confidence 999999977 77554
No 26
>PLN02400 cellulose synthase
Probab=99.97 E-value=9.3e-29 Score=285.09 Aligned_cols=261 Identities=17% Similarity=0.249 Sum_probs=194.7
Q ss_pred CCCCCeEEEEeecCCc---h-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH-------------------
Q 041566 229 LEDYPMVLVQIPMCNE---R-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAE------------------- 285 (687)
Q Consensus 229 ~~~~P~VsViIP~yNE---~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~------------------- 285 (687)
++++|.|+|+|++-+. + -...+|+.|+++.|||.+|+.++|.|||.+..|.+.+.+.
T Consensus 352 ~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepR 431 (1085)
T PLN02400 352 PSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPR 431 (1085)
T ss_pred cccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcC
Confidence 3569999999999764 4 5678999999999999999999999999877762222111
Q ss_pred --------------------------------------HHH------------Hh------------------------h
Q 041566 286 --------------------------------------VLK------------WQ------------------------Q 291 (687)
Q Consensus 286 --------------------------------------~~~------------~~------------------------~ 291 (687)
++. |. +
T Consensus 432 aPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~ 511 (1085)
T PLN02400 432 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGH 511 (1085)
T ss_pred CHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccCccCCCCCCCCCchhhhhhhcC
Confidence 000 00 0
Q ss_pred ---------cCcEEEEEeccCCCC----ChHhHHHHHhccc-ccCCccEEEEEcCCCCC-CHHHHHHHHHHHccCC----
Q 041566 292 ---------RGVHIIYRHRLIRSG----YKAGNLNSAMGCD-YVKDYEFVAIFDADFQP-TPDFLKKTIPYFKGND---- 352 (687)
Q Consensus 292 ---------~~v~i~~~~r~~~~g----gKa~aLn~gl~~~-~~a~~d~V~~lDaD~~~-~pd~L~~lv~~f~~~p---- 352 (687)
.=++++|+.|++|.| .||||||..++.+ ..+++.||+.+|+|+.. +|+.+++.+++|.+ |
T Consensus 512 ~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD-~~~g~ 590 (1085)
T PLN02400 512 SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD-PAIGK 590 (1085)
T ss_pred CCCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheec-cCCCc
Confidence 014688999998855 8999999999965 46899999999999977 89999999999984 5
Q ss_pred CeEEEeeeeeeccCCCCh-hHHhhhhhhhhhHHHHHhhccccccccccccceEEEehhhhhhh-----------------
Q 041566 353 DLALVQTRWSFVNKDENL-LTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEEC----------------- 414 (687)
Q Consensus 353 ~vg~Vqg~~~~~n~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~i----------------- 414 (687)
++++||.+|+|.|.+.+- +..-....+. ......++..+.+ +.||++++||++|-..
T Consensus 591 ~~afVQFPQrF~gi~~~D~Y~n~~~vffd---i~~~GldGlqGP~--YvGTGC~frR~aLYG~~p~~~~~~~~~~~~~~~ 665 (1085)
T PLN02400 591 KTCYVQFPQRFDGIDLHDRYANRNIVFFD---INLKGLDGIQGPV--YVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKS 665 (1085)
T ss_pred eeEEEeCCcccCCCCCCCCcccceeEEee---ccccccccCCCcc--ccccCcceeeeeeccCCCccccccccccccccc
Confidence 799999999998876531 1111111111 1122333443333 6788888888877410
Q ss_pred --------------------------------------------------------------------------------
Q 041566 415 -------------------------------------------------------------------------------- 414 (687)
Q Consensus 415 -------------------------------------------------------------------------------- 414 (687)
T Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~ 745 (1085)
T PLN02400 666 CCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPP 745 (1085)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCC
Confidence
Q ss_pred -------------------------C---CCCCCCccchHHHHHHHHHcCCeEEEEc--ceEEeeccCcCHHHHHHHHHH
Q 041566 415 -------------------------G---GWLDRTTVEDMDIAVRAHLCGWKFVYVN--DVKCLCELPESYEAYKKQQHR 464 (687)
Q Consensus 415 -------------------------G---Gf~~~~~~ED~~l~~rl~~~G~ri~~~~--~a~~~~e~P~t~~~~~~Qr~R 464 (687)
| ||..++++||+.++++++.+|||.+|+. .+.+.+.+|+++.+++.||.|
T Consensus 746 ~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGSvTED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~R 825 (1085)
T PLN02400 746 STNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLR 825 (1085)
T ss_pred CCCcHHHHHHHHHhhccCCccCCchhhhhCeeccceechHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHH
Confidence 0 2334567899999999999999999995 345789999999999999999
Q ss_pred hhcccHHHHH-HHhHHHh--hcCCcHHHHHHHHH
Q 041566 465 WHSGPMQLFR-MCFIDII--RSKVSWAKKANLIF 495 (687)
Q Consensus 465 W~~G~~q~~~-~~~~~~l--~~~l~~~~k~~~~~ 495 (687)
|+.|.+|+++ ++.|.+. ..++++.+++.++.
T Consensus 826 WA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Yl~ 859 (1085)
T PLN02400 826 WALGSIEILLSRHCPIWYGYNGRLKLLERLAYIN 859 (1085)
T ss_pred HhhcchheeeccCCccccccCCCCCHHHHHHHHH
Confidence 9999999987 4555332 25799999987663
No 27
>PLN02190 cellulose synthase-like protein
Probab=99.97 E-value=1.6e-28 Score=275.42 Aligned_cols=256 Identities=20% Similarity=0.332 Sum_probs=192.4
Q ss_pred CCCeEEEEeecCC---ch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH---------------------
Q 041566 231 DYPMVLVQIPMCN---ER-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAE--------------------- 285 (687)
Q Consensus 231 ~~P~VsViIP~yN---E~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~--------------------- 285 (687)
++|.|+|+|+++| |+ ..+.+|+.|+++.|||.+++.++|.|||..+-|.+.+.+.
T Consensus 91 ~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~WvPFCrK~~IepRaP 170 (756)
T PLN02190 91 DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRAP 170 (756)
T ss_pred cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhhcccccccCCCcCCH
Confidence 5899999999999 77 7889999999999999999999999999988773322221
Q ss_pred ---------------------------------HHHH------hh----------------------------------c
Q 041566 286 ---------------------------------VLKW------QQ----------------------------------R 292 (687)
Q Consensus 286 ---------------------------------~~~~------~~----------------------------------~ 292 (687)
++.. .+ .
T Consensus 171 e~YF~~~~~~~~~~~f~~e~~~~K~eYee~k~ri~~a~~~~~~~~~~~~~~~~~~~~~~dH~~iiqVll~~~~~~~~~~~ 250 (756)
T PLN02190 171 FRYFLNPPVATEDSEFSKDWEMTKREYEKLSRKVEDATGDSHWLDAEDDFEAFSNTKPNDHSTIVKVVWENKGGVGDEKE 250 (756)
T ss_pred HHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhccCCCCcccCCcccccCCCCCCCCccceEEEecCCCCcccccc
Confidence 1000 00 0
Q ss_pred CcEEEEEeccCCCC----ChHhHHHHHhccc-ccCCccEEEEEcCCCCC-CHHHHHHHHHHHccCC----CeEEEeeeee
Q 041566 293 GVHIIYRHRLIRSG----YKAGNLNSAMGCD-YVKDYEFVAIFDADFQP-TPDFLKKTIPYFKGND----DLALVQTRWS 362 (687)
Q Consensus 293 ~v~i~~~~r~~~~g----gKa~aLn~gl~~~-~~a~~d~V~~lDaD~~~-~pd~L~~lv~~f~~~p----~vg~Vqg~~~ 362 (687)
=++++|+.|++|.| .||||||..++.+ ..++++||+.+|+|+.. +|+.+++.+++|.+++ +++.||.+|.
T Consensus 251 lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ld~~~~~~~~~fVQfPQ~ 330 (756)
T PLN02190 251 VPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQKSKNSNHCAFVQFPQE 330 (756)
T ss_pred CceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhcCCCCCCCeeEEEeCchh
Confidence 14578888887754 8999999999865 45899999999999966 8999999999998532 6899999999
Q ss_pred eccCCCChhHHhhhhhhhhhHHHHHhhccccccccccccceEEEehhhhhhh----------------------------
Q 041566 363 FVNKDENLLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEEC---------------------------- 414 (687)
Q Consensus 363 ~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~i---------------------------- 414 (687)
+.+.-.|-....+.. .....++..+.+ +.||+|++||+++...
T Consensus 331 F~D~y~n~~~v~f~~-------~~~GldGlqGP~--YvGTGCffrR~alyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (756)
T PLN02190 331 FYDSNTNELTVLQSY-------LGRGIAGIQGPI--YIGSGCFHTRRVMYGLSSDDLEDDGSLSSVATREFLAEDSLARE 401 (756)
T ss_pred hccccCccceEEEEE-------eeccccccCCcc--cccCCcceEeeeecCCCcccccccccccccccccccchhhhhhh
Confidence 875433322211111 112233333332 6788888888766410
Q ss_pred -------------------------------------------------CCCCCCCccchHHHHHHHHHcCCeEEEEcce
Q 041566 415 -------------------------------------------------GGWLDRTTVEDMDIAVRAHLCGWKFVYVNDV 445 (687)
Q Consensus 415 -------------------------------------------------GGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a 445 (687)
-||..++++||..++++++.+|||.+|++..
T Consensus 402 fg~s~~f~~s~~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~ 481 (756)
T PLN02190 402 FGNSKEMVKSVVDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPD 481 (756)
T ss_pred cCCcHHHHHHHHHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCC
Confidence 1455667899999999999999999999643
Q ss_pred --EEeeccCcCHHHHHHHHHHhhcccHHHHHH-HhHHHh--hcCCcHHHHHHHHH
Q 041566 446 --KCLCELPESYEAYKKQQHRWHSGPMQLFRM-CFIDII--RSKVSWAKKANLIF 495 (687)
Q Consensus 446 --~~~~e~P~t~~~~~~Qr~RW~~G~~q~~~~-~~~~~l--~~~l~~~~k~~~~~ 495 (687)
...+.+|+++.+.+.||+||+.|.+|+++. +.|.+. ..++++.+++.++.
T Consensus 482 ~~AFlG~aP~~l~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl~ 536 (756)
T PLN02190 482 PPAFLGSMPPGGPEAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYLY 536 (756)
T ss_pred chhhcCcCCCChHHHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHHH
Confidence 367889999999999999999999999774 445443 25899899887653
No 28
>PLN02436 cellulose synthase A
Probab=99.97 E-value=1.7e-28 Score=281.73 Aligned_cols=260 Identities=19% Similarity=0.319 Sum_probs=192.2
Q ss_pred CCCCeEEEEeecCCc---h-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH--------------------
Q 041566 230 EDYPMVLVQIPMCNE---R-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAE-------------------- 285 (687)
Q Consensus 230 ~~~P~VsViIP~yNE---~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~-------------------- 285 (687)
+++|.|+|+|++-+. + -...+|+.|+++.|||.+|+.++|.|||.+..|.+.+.+.
T Consensus 362 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRa 441 (1094)
T PLN02436 362 SELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRA 441 (1094)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCC
Confidence 569999999999764 4 5778999999999999999999999999877662221111
Q ss_pred -----------------------------------------HHH--------Hh-h------------------------
Q 041566 286 -----------------------------------------VLK--------WQ-Q------------------------ 291 (687)
Q Consensus 286 -----------------------------------------~~~--------~~-~------------------------ 291 (687)
.++ |. +
T Consensus 442 Pe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~ 521 (1094)
T PLN02436 442 PEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHS 521 (1094)
T ss_pred HHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCC
Confidence 110 00 0
Q ss_pred --------cCcEEEEEeccCCCC----ChHhHHHHHhccc-ccCCccEEEEEcCCC-CCCHHHHHHHHHHHccCC----C
Q 041566 292 --------RGVHIIYRHRLIRSG----YKAGNLNSAMGCD-YVKDYEFVAIFDADF-QPTPDFLKKTIPYFKGND----D 353 (687)
Q Consensus 292 --------~~v~i~~~~r~~~~g----gKa~aLn~gl~~~-~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~p----~ 353 (687)
.=++++|+.|++|.| .||||||..++.+ ..+++.||+.+|+|+ +-+|+.+++.+++|.+ | +
T Consensus 522 ~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD-~~~g~~ 600 (1094)
T PLN02436 522 GVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMD-PQSGKK 600 (1094)
T ss_pred CCcccccccCceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcC-CccCCe
Confidence 014578888888754 8999999999976 458999999999999 5589999999999994 5 8
Q ss_pred eEEEeeeeeeccCCCCh-hHHhhhhhhhhhHHHHHhhccccccccccccceEEEehhhhhhh------------------
Q 041566 354 LALVQTRWSFVNKDENL-LTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEEC------------------ 414 (687)
Q Consensus 354 vg~Vqg~~~~~n~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~i------------------ 414 (687)
+++||.+|+|.|.+.+- +..-....+. ......++..+.+ +.||++++||++|-..
T Consensus 601 ~afVQFPQrF~gi~k~D~Y~n~~~vffd---i~~~GlDGlqGP~--YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~ 675 (1094)
T PLN02436 601 ICYVQFPQRFDGIDRHDRYSNRNVVFFD---INMKGLDGIQGPI--YVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPK 675 (1094)
T ss_pred eEEEcCCcccCCCCCCCcccccceEeee---ccccccccCCCcc--ccccCceeeeeeeeccCCcccccccccccccccc
Confidence 99999999998876531 1111111111 1122333433333 6788888888766411
Q ss_pred --------------------------------------------------------------------------------
Q 041566 415 -------------------------------------------------------------------------------- 414 (687)
Q Consensus 415 -------------------------------------------------------------------------------- 414 (687)
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~ 755 (1094)
T PLN02436 676 WCCLCCGSRKKKKKKKSKEKKKKKNREASKQIHALENIEEGIEGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVP 755 (1094)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCC
Confidence
Q ss_pred --------------------------C---CCCCCCccchHHHHHHHHHcCCeEEEE-cce-EEeeccCcCHHHHHHHHH
Q 041566 415 --------------------------G---GWLDRTTVEDMDIAVRAHLCGWKFVYV-NDV-KCLCELPESYEAYKKQQH 463 (687)
Q Consensus 415 --------------------------G---Gf~~~~~~ED~~l~~rl~~~G~ri~~~-~~a-~~~~e~P~t~~~~~~Qr~ 463 (687)
| ||..++++||+.++++++.+|||.+|+ |+. .+.+.+|+++.+++.||.
T Consensus 756 ~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~ 835 (1094)
T PLN02436 756 RNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVL 835 (1094)
T ss_pred CCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHHHHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHH
Confidence 0 233456789999999999999999998 444 367999999999999999
Q ss_pred HhhcccHHHHHH-HhHHHh--hcCCcHHHHHHHHH
Q 041566 464 RWHSGPMQLFRM-CFIDII--RSKVSWAKKANLIF 495 (687)
Q Consensus 464 RW~~G~~q~~~~-~~~~~l--~~~l~~~~k~~~~~ 495 (687)
||+.|.+|+++. +.|.+. ..++++.+++.++.
T Consensus 836 RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl~ 870 (1094)
T PLN02436 836 RWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYIN 870 (1094)
T ss_pred HHhhcceeeeeccCCcchhcccccCCHHHHHHHHH
Confidence 999999999864 555442 34799999987653
No 29
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=99.97 E-value=2.8e-28 Score=280.33 Aligned_cols=261 Identities=20% Similarity=0.310 Sum_probs=189.3
Q ss_pred CCCCeEEEEeecCCc---h-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH--------------------
Q 041566 230 EDYPMVLVQIPMCNE---R-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAE-------------------- 285 (687)
Q Consensus 230 ~~~P~VsViIP~yNE---~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~-------------------- 285 (687)
+.+|.|+|+|++-+. + -...+|+.|+++.|||.+|+.++|.|||.+..|.+.+.+.
T Consensus 284 ~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRa 363 (1044)
T PLN02915 284 NRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKHNIEPRA 363 (1044)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhhcchhhhcCCCcCC
Confidence 469999999999764 3 5778999999999999999999999999877762222111
Q ss_pred -----------------------------------------HHH--------H--------h-----h------------
Q 041566 286 -----------------------------------------VLK--------W--------Q-----Q------------ 291 (687)
Q Consensus 286 -----------------------------------------~~~--------~--------~-----~------------ 291 (687)
.++ + + +
T Consensus 364 Pe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~ 443 (1044)
T PLN02915 364 PEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSE 443 (1044)
T ss_pred HHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCCCCccceEEeecCC
Confidence 101 0 0 0
Q ss_pred --------cCcEEEEEeccCCCC----ChHhHHHHHhccc-ccCCccEEEEEcCCCCC-CHHHHHHHHHHHcc---CCCe
Q 041566 292 --------RGVHIIYRHRLIRSG----YKAGNLNSAMGCD-YVKDYEFVAIFDADFQP-TPDFLKKTIPYFKG---NDDL 354 (687)
Q Consensus 292 --------~~v~i~~~~r~~~~g----gKa~aLn~gl~~~-~~a~~d~V~~lDaD~~~-~pd~L~~lv~~f~~---~p~v 354 (687)
.=++++|+.|++|.| .||||||..++.+ ..+++.||+.+|+|+.. +|+.+++.+++|.+ ++++
T Consensus 444 ~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~ 523 (1044)
T PLN02915 444 GALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQLGKKL 523 (1044)
T ss_pred CCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeecCCCCCee
Confidence 014578998988755 8999999999965 45799999999999966 89999999999984 2379
Q ss_pred EEEeeeeeeccCCCCh-hHHhhhhhhhhhHHHHHhhccccccccccccceEEEehhhhhhh-------------------
Q 041566 355 ALVQTRWSFVNKDENL-LTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEEC------------------- 414 (687)
Q Consensus 355 g~Vqg~~~~~n~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~i------------------- 414 (687)
+.||.+|+|.+.+.+- +..-....+. ......++..+.+ +.||++++||++|-..
T Consensus 524 afVQFPQrF~gidk~D~Y~n~~~Vffd---i~~~GldGlqGP~--YvGTGCffrR~aLYG~~pp~~~~~~~~~~~~~~~~ 598 (1044)
T PLN02915 524 CYVQFPQRFDGIDRHDRYANRNVVFFD---INMKGLDGIQGPV--YVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSW 598 (1044)
T ss_pred EEEeCCcccCCCCCCCCcCccceEEEe---eecccccccCCcc--cccCCceeeeeeecCcCCccccccccccccccccc
Confidence 9999999998875531 1111111111 1112222332222 4566666666544300
Q ss_pred --------------------------------------------------------------------------------
Q 041566 415 -------------------------------------------------------------------------------- 414 (687)
Q Consensus 415 -------------------------------------------------------------------------------- 414 (687)
T Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (1044)
T PLN02915 599 CCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDELEKSSLMSQ 678 (1044)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhh
Confidence
Q ss_pred ---------------------------------------------------C---CCCCCCccchHHHHHHHHHcCCeEE
Q 041566 415 ---------------------------------------------------G---GWLDRTTVEDMDIAVRAHLCGWKFV 440 (687)
Q Consensus 415 ---------------------------------------------------G---Gf~~~~~~ED~~l~~rl~~~G~ri~ 440 (687)
| ||..++++||+.++++++.+|||.+
T Consensus 679 ~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSv 758 (1044)
T PLN02915 679 KNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSV 758 (1044)
T ss_pred hhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccccccccHHHHHHHHHccCCcEE
Confidence 1 3445667899999999999999999
Q ss_pred EEcc--eEEeeccCcCHHHHHHHHHHhhcccHHHHHHH-hHHHh--hcCCcHHHHHHHHH
Q 041566 441 YVND--VKCLCELPESYEAYKKQQHRWHSGPMQLFRMC-FIDII--RSKVSWAKKANLIF 495 (687)
Q Consensus 441 ~~~~--a~~~~e~P~t~~~~~~Qr~RW~~G~~q~~~~~-~~~~l--~~~l~~~~k~~~~~ 495 (687)
|+.. +...+.+|+++.+++.||.||+.|.+|+++.. .|.+. ..++++.+++.++.
T Consensus 759 Y~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~~~L~l~QRL~Yl~ 818 (1044)
T PLN02915 759 YCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGKLKWLERLAYIN 818 (1044)
T ss_pred eeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccCCCCCHHHHHHHHH
Confidence 9953 34679999999999999999999999999844 44443 34899999987653
No 30
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.96 E-value=4.8e-29 Score=253.65 Aligned_cols=223 Identities=19% Similarity=0.228 Sum_probs=176.4
Q ss_pred eEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHH
Q 041566 234 MVLVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNL 312 (687)
Q Consensus 234 ~VsViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aL 312 (687)
+|+|+||+|||+ +.+.+||+|+.+|+ | .+|+||||+++|.+.+.+++.. ....+.+. . .+++||++|+
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~-~---~eiivvdd~s~d~~~~~l~~~~-----~~~~~~v~-~-~~~~g~~~a~ 69 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK-P---LEIIVVTDGDDEPYLSILSQTV-----KYGGIFVI-T-VPHPGKRRAL 69 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC-C---CEEEEEeCCCChHHHHHHHhhc-----cCCcEEEE-e-cCCCChHHHH
Confidence 489999999999 99999999999998 3 6799999999999888764321 22223333 2 3456699999
Q ss_pred HHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccc
Q 041566 313 NSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGV 392 (687)
Q Consensus 313 n~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~ 392 (687)
|.|++ .+++|+|+++|+|+.++|++|++++..+. +|++++|++.....+.+.+.+.......+.............
T Consensus 70 n~g~~---~a~~d~v~~lD~D~~~~~~~l~~l~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (235)
T cd06434 70 AEGIR---HVTTDIVVLLDSDTVWPPNALPEMLKPFE-DPKVGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSY 145 (235)
T ss_pred HHHHH---HhCCCEEEEECCCceeChhHHHHHHHhcc-CCCEeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999 67999999999999999999999999999 799999999888777655555544433332222222222333
Q ss_pred cccccccccceEEEehhhhhhhCCCC----------CCCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHH
Q 041566 393 FINFFGFNGTAGVWRIKALEECGGWL----------DRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQ 462 (687)
Q Consensus 393 ~~~~~~~~G~~~~~Rr~aL~~iGGf~----------~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr 462 (687)
.+...+++|+++++||+++++.++.. ....+||.+++.++.++||++.|.+++.++++.|.+++++++||
T Consensus 146 ~~~~~~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~q~ 225 (235)
T cd06434 146 DGGVPCLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYTETPENYKKFLKQQ 225 (235)
T ss_pred CCCEEEccCcHHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEecCCeEEEEcchhHHHHHHHh
Confidence 44455678999999999999864322 22468999999999999999999999999999999999999999
Q ss_pred HHhhcccHH
Q 041566 463 HRWHSGPMQ 471 (687)
Q Consensus 463 ~RW~~G~~q 471 (687)
.||.+|.++
T Consensus 226 ~Rw~~~~~~ 234 (235)
T cd06434 226 LRWSRSNWR 234 (235)
T ss_pred hhhhhcccC
Confidence 999999753
No 31
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.96 E-value=2.7e-28 Score=246.39 Aligned_cols=223 Identities=19% Similarity=0.291 Sum_probs=173.5
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEecc-CCCCChHhHHHHH
Q 041566 237 VQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRL-IRSGYKAGNLNSA 315 (687)
Q Consensus 237 ViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~-~~~ggKa~aLn~g 315 (687)
|+||+|||++.+++||+|+++|+||.+.+||+||||+|+|.+.+.++ ...+ ..+.++.+...+ ..+.||+.++|.|
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~--~~~~~v~~~~~~~~~~~g~~~a~n~g 77 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE-FAAA--KPNFQLKILNNSRVSISGKKNALTTA 77 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-HHHh--CCCcceEEeeccCcccchhHHHHHHH
Confidence 68999999999999999999999998778999999999999998876 2222 234455555443 2355799999999
Q ss_pred hcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhcccccc
Q 041566 316 MGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFIN 395 (687)
Q Consensus 316 l~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 395 (687)
++ .+++|||+++|+|+.++|++|++++..+.+ ++.+++++..... ...++.......+.............. ..
T Consensus 78 ~~---~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 151 (229)
T cd04192 78 IK---AAKGDWIVTTDADCVVPSNWLLTFVAFIQK-EQIGLVAGPVIYF-KGKSLLAKFQRLDWLSLLGLIAGSFGL-GK 151 (229)
T ss_pred HH---HhcCCEEEEECCCcccCHHHHHHHHHHhhc-CCCcEEeeeeeec-CCccHHHHHHHHHHHHHHHHHhhHHHh-cC
Confidence 99 688999999999999999999999998875 5667777776554 344555555554433222221111111 12
Q ss_pred ccccccceEEEehhhhhhhCCCCCC--CccchHHHHHHHHHcCC-eEEEEc--ceEEeeccCcCHHHHHHHHHHhhcc
Q 041566 396 FFGFNGTAGVWRIKALEECGGWLDR--TTVEDMDIAVRAHLCGW-KFVYVN--DVKCLCELPESYEAYKKQQHRWHSG 468 (687)
Q Consensus 396 ~~~~~G~~~~~Rr~aL~~iGGf~~~--~~~ED~~l~~rl~~~G~-ri~~~~--~a~~~~e~P~t~~~~~~Qr~RW~~G 468 (687)
....+|+++++||++++++|||++. ...||.+++.++.++|+ ++.+++ ++.++++.|.+++++++||+||+.|
T Consensus 152 ~~~~~g~~~~~rr~~~~~~ggf~~~~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 152 PFMCNGANMAYRKEAFFEVGGFEGNDHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred ccccccceEEEEHHHHHHhcCCccccccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 2235799999999999999999854 44799999999999999 998874 5668889999999999999999987
No 32
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.96 E-value=3.2e-28 Score=250.41 Aligned_cols=226 Identities=19% Similarity=0.241 Sum_probs=179.5
Q ss_pred CCCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCCh
Q 041566 229 LEDYPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYK 308 (687)
Q Consensus 229 ~~~~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggK 308 (687)
.+..|+++|+||+|||++.+.++|+|+.+|+||.+++||+|+||+++|.+.+++++..+ .+ +.++... ++.||
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~----~~--v~~i~~~-~~~g~ 97 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYAD----KG--VKLLRFP-ERRGK 97 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhh----Cc--EEEEEcC-CCCCh
Confidence 45688999999999999999999999999999987789999999999999988876433 23 3333333 44569
Q ss_pred HhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHh
Q 041566 309 AGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQ 388 (687)
Q Consensus 309 a~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~ 388 (687)
++|+|.|++ .+++|+|+++|+|+.++|+++++++..+. +++++++++.....+.+. ..........+. .....
T Consensus 98 ~~a~n~gi~---~a~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~ 170 (251)
T cd06439 98 AAALNRALA---LATGEIVVFTDANALLDPDALRLLVRHFA-DPSVGAVSGELVIVDGGG--SGSGEGLYWKYE-NWLKR 170 (251)
T ss_pred HHHHHHHHH---HcCCCEEEEEccccCcCHHHHHHHHHHhc-CCCccEEEeEEEecCCcc--cchhHHHHHHHH-HHHHH
Confidence 999999999 67889999999999999999999999997 589999999887665542 111111111111 11111
Q ss_pred hccccccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHHHHhhcc
Q 041566 389 VNGVFINFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWHSG 468 (687)
Q Consensus 389 ~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~G 468 (687)
.........+.+|+++++||++++ +|+.....||.+++.++..+|+++.+.|++.+++..|.++.++++|+.||++|
T Consensus 171 ~~~~~~~~~~~~g~~~~~rr~~~~---~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~g 247 (251)
T cd06439 171 AESRLGSTVGANGAIYAIRRELFR---PLPADTINDDFVLPLRIARQGYRVVYEPDAVAYEEVAEDGSEEFRRRVRIAAG 247 (251)
T ss_pred HHHhcCCeeeecchHHHhHHHHhc---CCCcccchhHHHHHHHHHHcCCeEEeccccEEEEeCcccHHHHHHHHHHHHhc
Confidence 112222344468888899999998 67777788999999999999999999999999999999999999999999999
Q ss_pred cHH
Q 041566 469 PMQ 471 (687)
Q Consensus 469 ~~q 471 (687)
.+|
T Consensus 248 ~~~ 250 (251)
T cd06439 248 NLQ 250 (251)
T ss_pred ccc
Confidence 876
No 33
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.96 E-value=1.5e-26 Score=253.38 Aligned_cols=231 Identities=18% Similarity=0.206 Sum_probs=169.2
Q ss_pred CCCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEecc---CCC
Q 041566 229 LEDYPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRL---IRS 305 (687)
Q Consensus 229 ~~~~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~---~~~ 305 (687)
++..|+|||+||+|||++.+.+||+|+.+|+||+ ++||+||||+|+|+|.+++++..++++.. .++..++.+ .+.
T Consensus 36 ~~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~~~~~~~~~-~~i~vi~~~~~~~g~ 113 (384)
T TIGR03469 36 PEAWPAVVAVVPARNEADVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARAAARAYGRG-DRLTVVSGQPLPPGW 113 (384)
T ss_pred CCCCCCEEEEEecCCcHhHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHHHHHhcCCC-CcEEEecCCCCCCCC
Confidence 4568999999999999999999999999999996 48999999999999999998776544321 233333322 234
Q ss_pred CChHhHHHHHhcccccCC-----ccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhh
Q 041566 306 GYKAGNLNSAMGCDYVKD-----YEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLS 380 (687)
Q Consensus 306 ggKa~aLn~gl~~~~~a~-----~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~ 380 (687)
+||..|+|.|++ .++ +|+++++|+|+.++|+++++++..+++ +++++|++...... ++...+.....+.
T Consensus 114 ~Gk~~A~n~g~~---~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~-~~~~~vs~~~~~~~--~~~~~~~~~~~~~ 187 (384)
T TIGR03469 114 SGKLWAVSQGIA---AARTLAPPADYLLLTDADIAHGPDNLARLVARARA-EGLDLVSLMVRLRC--ESFWEKLLIPAFV 187 (384)
T ss_pred cchHHHHHHHHH---HHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHh-CCCCEEEecccccC--CCHHHHHHHHHHH
Confidence 579999999999 455 999999999999999999999999985 56677776544332 2333322111110
Q ss_pred hhHHH---HHhhccccccccccccceEEEehhhhhhhCCCCC--CCccchHHHHHHHHHcCCeEEEEcceEE-eeccCcC
Q 041566 381 FHFEV---EQQVNGVFINFFGFNGTAGVWRIKALEECGGWLD--RTTVEDMDIAVRAHLCGWKFVYVNDVKC-LCELPES 454 (687)
Q Consensus 381 ~~~~~---~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~--~~~~ED~~l~~rl~~~G~ri~~~~~a~~-~~e~P~t 454 (687)
..+.. ...............|+++++||++++++|||++ ....||.+++.++.++|+++.+...... .....++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~~~~~~~ED~~L~~r~~~~G~~v~~~~~~~~~s~r~~~~ 267 (384)
T TIGR03469 188 FFFQKLYPFRWVNDPRRRTAAAAGGCILIRREALERIGGIAAIRGALIDDCTLAAAVKRSGGRIWLGLAARTRSLRPYDG 267 (384)
T ss_pred HHHHHhcchhhhcCCCccceeecceEEEEEHHHHHHcCCHHHHhhCcccHHHHHHHHHHcCCcEEEEecCceEEEEecCC
Confidence 00000 0011111112233579999999999999999985 4578999999999999999999866553 3345568
Q ss_pred HHHHHHHHHHhhc
Q 041566 455 YEAYKKQQHRWHS 467 (687)
Q Consensus 455 ~~~~~~Qr~RW~~ 467 (687)
+++.++|+.||..
T Consensus 268 ~~~~~~~~~r~~~ 280 (384)
T TIGR03469 268 LGEIWRMIARTAY 280 (384)
T ss_pred HHHHHHHHHHhHH
Confidence 8999999999844
No 34
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.94 E-value=1.4e-25 Score=229.44 Aligned_cols=232 Identities=14% Similarity=0.181 Sum_probs=177.4
Q ss_pred eEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHH
Q 041566 234 MVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLN 313 (687)
Q Consensus 234 ~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn 313 (687)
+++|+||+||+++.+.++|+|+.+|+||...++|+|+||+++|++.+.+++..+ ....+.++..+ ++++++|+|
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~----~~~~v~~i~~~--~~~~~~a~N 74 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAA----KDPRIRLIDNP--KRIQSAGLN 74 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHh----cCCeEEEEeCC--CCCchHHHH
Confidence 489999999999999999999999999866789999999999999988886544 33445555433 345889999
Q ss_pred HHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHH--hhcc
Q 041566 314 SAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQ--QVNG 391 (687)
Q Consensus 314 ~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~--~~~~ 391 (687)
.|++ .+++|+++++|+|+.++|++|++++..+.+ ++.+++++.....+.+ .............+.... ....
T Consensus 75 ~g~~---~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 148 (249)
T cd02525 75 IGIR---NSRGDIIIRVDAHAVYPKDYILELVEALKR-TGADNVGGPMETIGES--KFQKAIAVAQSSPLGSGGSAYRGG 148 (249)
T ss_pred HHHH---HhCCCEEEEECCCccCCHHHHHHHHHHHhc-CCCCEEecceecCCCC--hHHHHHHHHhhchhccCCcccccc
Confidence 9999 679999999999999999999999998874 7777888765433322 111111100000000000 0000
Q ss_pred ccccccccccceEEEehhhhhhhCCCCCCC-ccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHHHHhhcccH
Q 041566 392 VFINFFGFNGTAGVWRIKALEECGGWLDRT-TVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWHSGPM 470 (687)
Q Consensus 392 ~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~-~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~G~~ 470 (687)
.........|++.++|+++++++|+|++.. ..||.+++.++.++|+++.++|++.+.+..+.+++++.+|+.||..|.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~~~~s~~~~~~~~~r~~~~~~ 228 (249)
T cd02525 149 AVKIGYVDTVHHGAYRREVFEKVGGFDESLVRNEDAELNYRLRKAGYKIWLSPDIRVYYYPRSTLKKLARQYFRYGKWRA 228 (249)
T ss_pred ccccccccccccceEEHHHHHHhCCCCcccCccchhHHHHHHHHcCcEEEEcCCeEEEEcCCCCHHHHHHHHHHHhhhhH
Confidence 000022357888999999999999998753 4799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 041566 471 QLFRMCF 477 (687)
Q Consensus 471 q~~~~~~ 477 (687)
+..+++.
T Consensus 229 ~~~~~~~ 235 (249)
T cd02525 229 RTLRKHR 235 (249)
T ss_pred HHHHhCc
Confidence 9877653
No 35
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=99.92 E-value=5e-25 Score=247.00 Aligned_cols=285 Identities=22% Similarity=0.403 Sum_probs=186.1
Q ss_pred cEEEEEeccCCCC----ChHhHHHHHhccc-ccCCccEEEEEcCCC-CCCHHHHHHHHHHHccCCC----eEEEeeeeee
Q 041566 294 VHIIYRHRLIRSG----YKAGNLNSAMGCD-YVKDYEFVAIFDADF-QPTPDFLKKTIPYFKGNDD----LALVQTRWSF 363 (687)
Q Consensus 294 v~i~~~~r~~~~g----gKa~aLn~gl~~~-~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~p~----vg~Vqg~~~~ 363 (687)
++++|+.|++|.+ .||||||..++.+ ..++++||+.+|+|+ ..+|+.+++.+++|.+ |+ ++.||.++.|
T Consensus 166 P~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d-~~~g~~~~~vQfpq~f 244 (720)
T PF03552_consen 166 PMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMD-PKIGKKIAFVQFPQRF 244 (720)
T ss_pred CeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhcc-CCCCCeeEEEeCCcee
Confidence 4688999988754 8999999999865 457999999999999 5589999999999994 65 9999999999
Q ss_pred ccCCCC-hhHHhhhhhhhhhHHHHHhhccccccccccccceEEEehhhhhh-----------------------------
Q 041566 364 VNKDEN-LLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEE----------------------------- 413 (687)
Q Consensus 364 ~n~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~----------------------------- 413 (687)
.|.+.+ .+.......+. ...+..++..+.+ +.|+++++||++|..
T Consensus 245 ~~i~~~d~y~~~~~~~~~---~~~~g~dG~~gp~--y~Gtgc~~rR~al~g~~~~~~~~~~~~~~~~~~~c~~~~k~~~~ 319 (720)
T PF03552_consen 245 DGIDKNDRYGNQNRVFFD---INMRGLDGLQGPF--YVGTGCFFRREALYGFDPPRYEKDPEKTCCCCSCCFGRRKKKKS 319 (720)
T ss_pred CCCCcCCCCCccceeeee---ccccccccCCCce--eeecCcceechhhhCCCCCchhcccCcceeeeecccCCcccccc
Confidence 887653 11111111111 1123333443333 689999999998731
Q ss_pred --------------------------------------------------------------------------------
Q 041566 414 -------------------------------------------------------------------------------- 413 (687)
Q Consensus 414 -------------------------------------------------------------------------------- 413 (687)
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~EA~~ 399 (720)
T PF03552_consen 320 KKKPKKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLEEAIH 399 (720)
T ss_pred cccchhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence
Q ss_pred -----------hC---CCCCCCccchHHHHHHHHHcCCeEEEEcce--EEeeccCcCHHHHHHHHHHhhcccHHHHH-HH
Q 041566 414 -----------CG---GWLDRTTVEDMDIAVRAHLCGWKFVYVNDV--KCLCELPESYEAYKKQQHRWHSGPMQLFR-MC 476 (687)
Q Consensus 414 -----------iG---Gf~~~~~~ED~~l~~rl~~~G~ri~~~~~a--~~~~e~P~t~~~~~~Qr~RW~~G~~q~~~-~~ 476 (687)
.| ||..++++||+.++++++.+|||.+|+... .+.+.+|.++.+-+.|++||+.|.+|++. ++
T Consensus 400 V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~fSr~ 479 (720)
T PF03552_consen 400 VASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIFFSRH 479 (720)
T ss_pred HhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeeehhcC
Confidence 01 234456789999999999999999999653 47899999999999999999999999987 66
Q ss_pred hHHHhh--cCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhccc------chhHHHHHHHHHHHH-----HH
Q 041566 477 FIDIIR--SKVSWAKKANLIFLFFLLRKLVLPFYS-FTLFCIILPLTMFIPE------AELPAWVVSYVPGFM-----SI 542 (687)
Q Consensus 477 ~~~~l~--~~l~~~~k~~~~~~~~ll~~li~p~~~-f~l~~~~~p~~~~~~~------~~l~~~~~~~~p~~i-----~~ 542 (687)
.|.+.. .++++.+++.++.. .+.|+.+ +.+++.++|..+++.+ ..-+ |++.+++.++ .+
T Consensus 480 ~Pl~~g~~~rL~~lQrLaY~~~------~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~-~~~~f~~lf~~~~~~~l 552 (720)
T PF03552_consen 480 CPLWYGYGGRLKFLQRLAYLNY------MLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSP-WFIYFLALFVSIYAYSL 552 (720)
T ss_pred CchhccCCCCCcHHHHHHHHHH------hhhHHHHHHHHHHHHhHHHHhhCCCcccCccccc-hhHHHHHHHHHHHHHHH
Confidence 665544 48888888775532 2334443 3344555665554432 2111 2222222221 12
Q ss_pred HHhhcCCCCch-hH--H-HHHHHHHHHHHHHHHHHHHHHHhc--CCcccEEEeecCCC
Q 041566 543 LNILPAPRSFP-FI--V-PYLLFENTMSVTKFNAMISGLFRF--GSSYEWIVTKKLGR 594 (687)
Q Consensus 543 l~~~~~~~~~~-~~--~-p~~lf~~~~s~~~~~A~i~gl~~~--g~~~~w~vT~k~~~ 594 (687)
+.......++. ++ - .|++ ..+|-+ +.|++.++++. ++...|.||+|...
T Consensus 553 lE~~wsG~si~~WWrnQq~W~I--~~tSa~-LfAvl~~iLK~lg~s~t~F~VTsK~~d 607 (720)
T PF03552_consen 553 LEFRWSGVSIREWWRNQQFWMI--GGTSAH-LFAVLQGILKVLGGSETSFTVTSKVSD 607 (720)
T ss_pred HHHHhccCcHHHhhcccceeee--hhhHHH-HHHHHHHHHHHHcCCccceeecccccc
Confidence 22221111111 00 0 0000 112221 24778888776 78999999999765
No 36
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.92 E-value=2.5e-24 Score=211.28 Aligned_cols=181 Identities=22% Similarity=0.295 Sum_probs=144.8
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHh
Q 041566 237 VQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAM 316 (687)
Q Consensus 237 ViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl 316 (687)
|+||+|||++.+.++|+++++|+||..+++|+|+||+|+|.|.+++++ .+..+..+ ...+++||+.|+|.|+
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~-------~~~~~~~~-~~~~~~gk~~aln~g~ 72 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA-------AGATVLER-HDPERRGKGYALDFGF 72 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH-------cCCeEEEe-CCCCCCCHHHHHHHHH
Confidence 689999999999999999999999877799999999999999988763 33444333 3345667999999999
Q ss_pred cccc--cCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccccc
Q 041566 317 GCDY--VKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFI 394 (687)
Q Consensus 317 ~~~~--~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 394 (687)
+... .+++|+|+++|+|++++|+++.+++..+.+++ ++|++.....+.+.+++.+.+...+.......+......+
T Consensus 73 ~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~--~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (183)
T cd06438 73 RHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGA--RVVQAYYNSKNPDDSWITRLYAFAFLVFNRLRPLGRSNLG 150 (183)
T ss_pred HHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCC--CeeEEEEeeeCCccCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8532 34699999999999999999999999998544 5788877777666688888877766555554444333344
Q ss_pred cccccccceEEEehhhhhhhCCCCCCCccchHHH
Q 041566 395 NFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDI 428 (687)
Q Consensus 395 ~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l 428 (687)
....+.|+++++||+++++ |||++.+++||+++
T Consensus 151 ~~~~~~G~~~~~rr~~l~~-~g~~~~~l~ED~~~ 183 (183)
T cd06438 151 LSCQLGGTGMCFPWAVLRQ-APWAAHSLTEDLEF 183 (183)
T ss_pred CCeeecCchhhhHHHHHHh-CCCCCCCcccccCC
Confidence 4455789999999999999 89999999999874
No 37
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1e-20 Score=200.83 Aligned_cols=270 Identities=21% Similarity=0.273 Sum_probs=203.6
Q ss_pred CCeEEEEeecCCch-----HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHH----HHHHHhhcCcEEEEEecc
Q 041566 232 YPMVLVQIPMCNER-----EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKA----EVLKWQQRGVHIIYRHRL 302 (687)
Q Consensus 232 ~P~VsViIP~yNE~-----~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~----~~~~~~~~~v~i~~~~r~ 302 (687)
.-+..|++|+|||+ .-++.+-+|+.+... .+++.++|+.|+.|++..-.-++ .+++. +...+|.|+.|.
T Consensus 143 ~hrTAilmPiynEd~~rVfAgLrA~~eSla~Tg~-~~~FD~FVLSDs~dpdialAEq~a~~~l~~e~-~g~~~ifYRrRr 220 (736)
T COG2943 143 LHRTAILMPIYNEDVNRVFAGLRATYESLAATGH-AEHFDFFVLSDSRDPDIALAEQKAWAELCREL-GGEGNIFYRRRR 220 (736)
T ss_pred ccceeEEeeccccCHHHHHHHHHHHHHHHHhhCC-cccceEEEEcCCCCchhhhhHHHHHHHHHHHh-CCCCceeeehHh
Confidence 34689999999998 457888888877653 34688999999998876422111 22222 233789999999
Q ss_pred CCCCChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhh
Q 041566 303 IRSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFH 382 (687)
Q Consensus 303 ~~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~ 382 (687)
+|.+.|+||+..-.++ ....++|.+++|||++..+|++.+++..|+.||+.|++|+.....|. ++++.|+|.+.....
T Consensus 221 ~n~~RKaGNIaDfcrR-wG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg-~TL~AR~qQFatrvY 298 (736)
T COG2943 221 RNVKRKAGNIADFCRR-WGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASGG-DTLYARCQQFATRVY 298 (736)
T ss_pred hhhcccccCHHHHHHH-hCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecchhhcCc-chHHHHHHHHHHHHh
Confidence 9999999999988874 46789999999999999999999999999999999999999887775 588888887654322
Q ss_pred HHHH-HhhccccccccccccceEEEehhhhhhhC---------CCCCCCccchHHHHHHHHHcCCeEEEEcceE-Eeecc
Q 041566 383 FEVE-QQVNGVFINFFGFNGTAGVWRIKALEECG---------GWLDRTTVEDMDIAVRAHLCGWKFVYVNDVK-CLCEL 451 (687)
Q Consensus 383 ~~~~-~~~~~~~~~~~~~~G~~~~~Rr~aL~~iG---------Gf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~-~~~e~ 451 (687)
-... ....-...+-..+.|++.++|.+++-+.- .|.....+.|+--+-.+.+.||.+...++.. .|+|.
T Consensus 299 Gpl~~~GLawW~~~Es~yWGHNAIIRt~aF~~hcgLp~LpG~~pFgG~ilSHDfvEAALmRRaGW~v~ia~dL~GSyEE~ 378 (736)
T COG2943 299 GPLFTAGLAWWQLGESHYWGHNAIIRTKAFIEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWIAYDLDGSYEEL 378 (736)
T ss_pred chHHhhhhHHHhccccccccccceeechhhHHhcCCCCCCCCCCCCccccchHHHHHHHHhhcCceEEEeccCCCchhhC
Confidence 1111 11101111122378999999999998863 3445556789999999999999999998876 89999
Q ss_pred CcCHHHHHHHHHHhhcccHHHHHHHhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041566 452 PESYEAYKKQQHRWHSGPMQLFRMCFIDIIRSKVSWAKKANLIFLFFLLRKLVLPFYSFT 511 (687)
Q Consensus 452 P~t~~~~~~Qr~RW~~G~~q~~~~~~~~~l~~~l~~~~k~~~~~~~~ll~~li~p~~~f~ 511 (687)
|.++-++.++-+|||+|++|.++. +..+.+.+..+.++... ....+..|++.+.
T Consensus 379 PpnLlD~l~RDRRWC~GNLqh~rl----~~~~GlHwvsR~h~~tG--VmsYlsaPlWfl~ 432 (736)
T COG2943 379 PPNLLDELKRDRRWCHGNLQHFRL----FLVKGLHWVSRAHFLTG--VMSYLSAPLWFLF 432 (736)
T ss_pred CchHHHHHhhhhHhhhcchhhcee----eccCCccHHHHHHHHHH--HHHHHhhHHHHHH
Confidence 999999999999999999997653 33457778888776643 3444566765443
No 38
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.90 E-value=3.5e-23 Score=204.80 Aligned_cols=181 Identities=27% Similarity=0.380 Sum_probs=143.7
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHh
Q 041566 237 VQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAM 316 (687)
Q Consensus 237 ViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl 316 (687)
|+||+|||++.+.++|+|+.+|+ |. ++|+|+||+|+|.|.++++ ... ...+++++....++.++||++|+|.|+
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~-~~--~eIivvdd~S~D~t~~~~~-~~~--~~~~v~~i~~~~~~~~~Gk~~aln~g~ 74 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNK-PN--FLVLVIDDASDDDTAGIVR-LAI--TDSRVHLLRRHLPNARTGKGDALNAAY 74 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCC-CC--eEEEEEECCCCcCHHHHHh-hee--cCCcEEEEeccCCcCCCCHHHHHHHHH
Confidence 68999999999999999999998 54 7899999999999998886 211 122344332222344567999999999
Q ss_pred cccc--------cCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHh
Q 041566 317 GCDY--------VKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQ 388 (687)
Q Consensus 317 ~~~~--------~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~ 388 (687)
+... ..++|+|+++|+|++++|++|+++...+. +|+++++++.....|.+.+++++++.+++...+...+.
T Consensus 75 ~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 153 (191)
T cd06436 75 DQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFS-DPRVAGTQSRVRMYNRHKNLLTILQDLEFFIIIAATQS 153 (191)
T ss_pred HHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhc-CCceEEEeeeEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8421 11358999999999999999999888886 69999999999889888899999999998877666666
Q ss_pred hccccccccccccceEEEehhhhhhhCCCCCC--Cccch
Q 041566 389 VNGVFINFFGFNGTAGVWRIKALEECGGWLDR--TTVED 425 (687)
Q Consensus 389 ~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~--~~~ED 425 (687)
..+..+. .++.|++.++|+++++++|||.+. +++||
T Consensus 154 ~~~~~~~-~~~~G~~~~~r~~~l~~vgg~~~~~~~~~ED 191 (191)
T cd06436 154 LRALTGT-VGLGGNGQFMRLSALDGLIGEEPWSDSLLED 191 (191)
T ss_pred HHHhcCc-EEECCeeEEEeHHHHHHhhcCCCCchhhcCC
Confidence 5555443 457899999999999999766543 77887
No 39
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.90 E-value=9.9e-23 Score=215.90 Aligned_cols=210 Identities=14% Similarity=0.083 Sum_probs=149.0
Q ss_pred EEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHH
Q 041566 236 LVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNS 314 (687)
Q Consensus 236 sViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~ 314 (687)
|||||+|||+ +.+++||+|+.+|+++....|||||||+|+|.+.+.+.+.... ....++.++..+ .+.|.+.|.|.
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~--~~~~~v~vi~~~-~n~G~~~a~N~ 77 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYK--KYLPKVKVLRLK-KREGLIRARIA 77 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHh--hcCCcEEEEEcC-CCCCHHHHHHH
Confidence 6999999999 9999999999999988655799999999999998877652211 233344444444 45569999999
Q ss_pred HhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHH-------hhhhhhhhhHH---
Q 041566 315 AMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTR-------LQNINLSFHFE--- 384 (687)
Q Consensus 315 gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r-------~~~~~~~~~~~--- 384 (687)
|++ .+++|||+++|+|+.++|++|++++..+.++|.. ++.+.....+.+...... .........+.
T Consensus 78 g~~---~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~-~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (299)
T cd02510 78 GAR---AATGDVLVFLDSHCEVNVGWLEPLLARIAENRKT-VVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLP 153 (299)
T ss_pred HHH---HccCCEEEEEeCCcccCccHHHHHHHHHHhCCCe-EEEeeeccccCCCeeEecCCCceeEEecccceeccccCC
Confidence 999 7899999999999999999999999999876664 555433222211100000 00000000000
Q ss_pred HH---HhhccccccccccccceEEEehhhhhhhCCCCCCCc---cchHHHHHHHHHcCCeEEEEcceEEeeccC
Q 041566 385 VE---QQVNGVFINFFGFNGTAGVWRIKALEECGGWLDRTT---VEDMDIAVRAHLCGWKFVYVNDVKCLCELP 452 (687)
Q Consensus 385 ~~---~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~---~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P 452 (687)
.. ............++|+++++||++++++|||++... .||.|+++|+.++|+++.++|++.+.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 154 EEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred HHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEEEecc
Confidence 00 000011112233679999999999999999998654 499999999999999999999999876443
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.89 E-value=2.8e-22 Score=198.84 Aligned_cols=194 Identities=19% Similarity=0.247 Sum_probs=144.0
Q ss_pred CeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHH-HHHHHHHHHHhhcCcEEEEEeccCCCCChHh
Q 041566 233 PMVLVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQ-LLIKAEVLKWQQRGVHIIYRHRLIRSGYKAG 310 (687)
Q Consensus 233 P~VsViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~-~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~ 310 (687)
|+++|+||+|||+ +.+++||+|+.+|+++. ++|+|+||+|+|.+. ++++.... ...++.+...+ .++|++.
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~d~~~~~~~~~~~~----~~~~~~~~~~~-~~~g~~~ 73 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPN--WELCIADDASTDPEVKRVLKKYAA----QDPRIKVVFRE-ENGGISA 73 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCCChHHHHHHHHHHh----cCCCEEEEEcc-cCCCHHH
Confidence 6799999999999 99999999999999986 789999999988654 44443322 23334444333 4556999
Q ss_pred HHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhc
Q 041566 311 NLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVN 390 (687)
Q Consensus 311 aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~ 390 (687)
++|.|++ .+++||++++|+|+.++|+++++++..+..+|++++|.+.......+...........+. .....
T Consensus 74 a~n~g~~---~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--- 145 (202)
T cd04184 74 ATNSALE---LATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKPDWS--PDLLL--- 145 (202)
T ss_pred HHHHHHH---hhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCCCCC--HHHhh---
Confidence 9999999 678999999999999999999999999966799998877654332222111111010100 00000
Q ss_pred cccccccccccceEEEehhhhhhhCCCCCCC-ccchHHHHHHHHHcCCeEEEEcceE
Q 041566 391 GVFINFFGFNGTAGVWRIKALEECGGWLDRT-TVEDMDIAVRAHLCGWKFVYVNDVK 446 (687)
Q Consensus 391 ~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~-~~ED~~l~~rl~~~G~ri~~~~~a~ 446 (687)
. ..+.|+++++||++++++|||++.. ..||.+++.|+.++|+++.++|++.
T Consensus 146 ~-----~~~~~~~~~~~r~~~~~iggf~~~~~~~eD~~l~~rl~~~g~~~~~~~~~~ 197 (202)
T cd04184 146 S-----QNYIGHLLVYRRSLVRQVGGFREGFEGAQDYDLVLRVSEHTDRIAHIPRVL 197 (202)
T ss_pred h-----cCCccceEeEEHHHHHHhCCCCcCcccchhHHHHHHHHhccceEEEccHhh
Confidence 0 1245777899999999999998753 4799999999999999999999865
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.89 E-value=2.6e-22 Score=199.10 Aligned_cols=195 Identities=17% Similarity=0.189 Sum_probs=147.0
Q ss_pred EEEeecCCch--HHHHHHHHHHHcCCCCCCceEEEEEcCCC-ChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHH
Q 041566 236 LVQIPMCNER--EVYGQSIAAVCIQDWPKERMLVQILDDSD-DLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNL 312 (687)
Q Consensus 236 sViIP~yNE~--~~l~~tL~Sl~~q~yP~~~leViVvDD~s-~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aL 312 (687)
||+||+||++ +.+++||+|+.+|+|++ .+|+||||++ +|.+.+++++..++ .+ +.+...+. +.|+++|+
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~--~eiiivdd~ss~d~t~~~~~~~~~~---~~--i~~i~~~~-n~G~~~a~ 72 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPP--DEVVLVKDGPVTQSLNEVLEEFKRK---LP--LKVVPLEK-NRGLGKAL 72 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCC--cEEEEEECCCCchhHHHHHHHHHhc---CC--eEEEEcCc-cccHHHHH
Confidence 6899999997 68999999999999986 5688888887 78888877765432 22 44444444 45699999
Q ss_pred HHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccc
Q 041566 313 NSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGV 392 (687)
Q Consensus 313 n~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~ 392 (687)
|.|++ .+++|||+++|+|++++|+++++++..+.++|+++++++.....+.+........... .........
T Consensus 73 N~g~~---~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--- 144 (201)
T cd04195 73 NEGLK---HCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRRLPT--SHDDILKFA--- 144 (201)
T ss_pred HHHHH---hcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeeccccCCC--CHHHHHHHh---
Confidence 99999 6899999999999999999999999999888999999998766544332111000000 000000000
Q ss_pred cccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHHcCCeEEEEcceEE
Q 041566 393 FINFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKC 447 (687)
Q Consensus 393 ~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~ 447 (687)
.....+.+.++++||++++++|||++....||++++.++..+|+++.++|++.+
T Consensus 145 -~~~~~~~~~~~~~rr~~~~~~g~~~~~~~~eD~~~~~r~~~~g~~~~~~~~~~~ 198 (201)
T cd04195 145 -RRRSPFNHPTVMFRKSKVLAVGGYQDLPLVEDYALWARMLANGARFANLPEILV 198 (201)
T ss_pred -ccCCCCCChHHhhhHHHHHHcCCcCCCCCchHHHHHHHHHHcCCceecccHHHh
Confidence 011224677789999999999999988889999999999999999999988754
No 42
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.87 E-value=2.2e-21 Score=191.82 Aligned_cols=142 Identities=30% Similarity=0.520 Sum_probs=127.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccccccccccccceEE
Q 041566 326 FVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGV 405 (687)
Q Consensus 326 ~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 405 (687)
||+++|+|+.++||+++++++.++ +|+++++|++..+.+ .++++++.+..++.......+...+..+....++|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRN-RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecC-CCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 689999999999999999999999 799999999998764 468899999988765555555454455566668999999
Q ss_pred EehhhhhhhCCCC-CCCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHHHHhhccc
Q 041566 406 WRIKALEECGGWL-DRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWHSGP 469 (687)
Q Consensus 406 ~Rr~aL~~iGGf~-~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~G~ 469 (687)
+|+++++++|||+ ...++||++++.++.++||++.++|++.++++.|+|+.++++||+||.+|.
T Consensus 79 ~r~~~l~~vg~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 79 FRREALREVGGFDDPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred eeHHHHHHhCcccccccccchHHHHHHHHHCCCEEEEecccceeeeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999 788899999999999999999999999999999999999999999999997
No 43
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.87 E-value=1.2e-20 Score=193.81 Aligned_cols=212 Identities=18% Similarity=0.143 Sum_probs=150.1
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChH
Q 041566 230 EDYPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKA 309 (687)
Q Consensus 230 ~~~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa 309 (687)
...|+|+|+||+|||++.+..+++++.++..+...+||+|+||+|+|+|.+++++..++++. .++..... .++.|++
T Consensus 6 ~~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~--~~v~~~~~-~~n~G~~ 82 (243)
T PLN02726 6 EGAMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGE--DRILLRPR-PGKLGLG 82 (243)
T ss_pred CCCceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCC--CcEEEEec-CCCCCHH
Confidence 44689999999999999999999988764322225899999999999999998876654332 23333333 3445699
Q ss_pred hHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCC-C--ChhHHhhhhhhhhhHHHH
Q 041566 310 GNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKD-E--NLLTRLQNINLSFHFEVE 386 (687)
Q Consensus 310 ~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~-~--~~~~r~~~~~~~~~~~~~ 386 (687)
+|+|.|++ .+++|||+++|+|++++|+++++++..+.+ ++.++|.|.....+.. . .+..+...... .. ..
T Consensus 83 ~a~n~g~~---~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~--~~-~~ 155 (243)
T PLN02726 83 TAYIHGLK---HASGDFVVIMDADLSHHPKYLPSFIKKQRE-TGADIVTGTRYVKGGGVHGWDLRRKLTSRGA--NV-LA 155 (243)
T ss_pred HHHHHHHH---HcCCCEEEEEcCCCCCCHHHHHHHHHHHHh-cCCcEEEEccccCCCCcCCccHHHHHHHHHH--HH-HH
Confidence 99999999 689999999999999999999999999874 6778888864332221 1 12111111110 00 11
Q ss_pred HhhccccccccccccceEEEehhhhhhhCCCC-CCCccchHHHHHHHHHcCCeEEEEcceEEeeccCc
Q 041566 387 QQVNGVFINFFGFNGTAGVWRIKALEECGGWL-DRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPE 453 (687)
Q Consensus 387 ~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~-~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~ 453 (687)
..... .......|.+.++||+++++++.+. .....+|.+++.++..+|+++..+|.....+...+
T Consensus 156 ~~~~~--~~~~d~~g~~~~~rr~~~~~i~~~~~~~~~~~~~el~~~~~~~g~~i~~vp~~~~~r~~g~ 221 (243)
T PLN02726 156 QTLLW--PGVSDLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVRASRKGYRIEEVPITFVDRVYGE 221 (243)
T ss_pred HHHhC--CCCCcCCCcccceeHHHHHHHHhhccCCCcEEehHHHHHHHHcCCcEEEeCcEEeCCCCCc
Confidence 11111 1222357788899999999997543 34567899999999999999999998876654333
No 44
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.86 E-value=2.5e-20 Score=188.07 Aligned_cols=203 Identities=13% Similarity=0.096 Sum_probs=142.8
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEec-cCCCCChHhHHHHH
Q 041566 237 VQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHR-LIRSGYKAGNLNSA 315 (687)
Q Consensus 237 ViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r-~~~~ggKa~aLn~g 315 (687)
|+||+||+++.+++||+|+.+|+||. .+||+|+||+|+|.|.+++++..++.+..+++++.... ...+.|.+.|+|.|
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~-~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g 79 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEG-TLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQA 79 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCC-CEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHH
Confidence 68999999999999999999999984 58999999999999999888876655444455443322 22344689999999
Q ss_pred hcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCC-ChhHHhhhhhhhhhHHHHHhhccccc
Q 041566 316 MGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDE-NLLTRLQNINLSFHFEVEQQVNGVFI 394 (687)
Q Consensus 316 l~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~-~~~~r~~~~~~~~~~~~~~~~~~~~~ 394 (687)
++ .+++||++++|+|+.++|+++++++..+.++|. +++.+.......+. ....+.... ........+.... .+
T Consensus 80 ~~---~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~ 153 (219)
T cd06913 80 IA---QSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPN-SIIGCQVRRIPEDSTERYTRWINT-LTREQLLTQVYTS-HG 153 (219)
T ss_pred HH---hcCCCEEEEECCCccCChhHHHHHHHHHHhCCC-cEEEEEEEecCcccchhhHHHHHh-cCHHHHHHHHHhh-cC
Confidence 99 789999999999999999999999888876665 34444433222211 111111110 0000000111100 00
Q ss_pred cccccccceEEEehhhhhhhCCCCCC--CccchHHHHHHHHHcCCeEEEEcceEEe
Q 041566 395 NFFGFNGTAGVWRIKALEECGGWLDR--TTVEDMDIAVRAHLCGWKFVYVNDVKCL 448 (687)
Q Consensus 395 ~~~~~~G~~~~~Rr~aL~~iGGf~~~--~~~ED~~l~~rl~~~G~ri~~~~~a~~~ 448 (687)
. +.....+++||++++++|||++. ...||++++.|+.++|+++.+++++...
T Consensus 154 ~--~~~~~~~~~rr~~~~~~g~f~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~ 207 (219)
T cd06913 154 P--TVIMPTWFCSREWFSHVGPFDEGGKGVPEDLLFFYEHLRKGGGVYRVDRCLLL 207 (219)
T ss_pred C--ccccccceeehhHHhhcCCccchhccchhHHHHHHHHHHcCCceEEEcceeee
Confidence 1 12223467999999999999875 3469999999999999999999997743
No 45
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.86 E-value=9.2e-21 Score=186.67 Aligned_cols=191 Identities=18% Similarity=0.239 Sum_probs=146.4
Q ss_pred EEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHH
Q 041566 236 LVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSA 315 (687)
Q Consensus 236 sViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~g 315 (687)
||+||+||+++.++++|+|+.+|++|+ +||+|+||+|+|.+.+.+++... . +.+... .+++|++.++|.|
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~~~--~evivvDd~s~d~~~~~~~~~~~----~---~~~~~~-~~~~g~~~a~n~~ 70 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTYPN--IEYIVIDGGSTDGTVDIIKKYED----K---ITYWIS-EPDKGIYDAMNKG 70 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCCCC--ceEEEEeCCCCccHHHHHHHhHh----h---cEEEEe-cCCcCHHHHHHHH
Confidence 689999999999999999999999986 88999999999999988876432 1 122222 3456699999999
Q ss_pred hcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhcccccc
Q 041566 316 MGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFIN 395 (687)
Q Consensus 316 l~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 395 (687)
++ .+++|||+++|+|+++.++++.+++..+..+++.+++.|.....+.+........ .......... .
T Consensus 71 ~~---~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~ 138 (202)
T cd06433 71 IA---LATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRR----PPPFLDKFLL-----Y 138 (202)
T ss_pred HH---HcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCC----CcchhhhHHh-----h
Confidence 99 6889999999999999999999999777767899999998766544332211111 0000111111 1
Q ss_pred ccccccceEEEehhhhhhhCCCCCC-CccchHHHHHHHHHcCCeEEEEcceEEe
Q 041566 396 FFGFNGTAGVWRIKALEECGGWLDR-TTVEDMDIAVRAHLCGWKFVYVNDVKCL 448 (687)
Q Consensus 396 ~~~~~G~~~~~Rr~aL~~iGGf~~~-~~~ED~~l~~rl~~~G~ri~~~~~a~~~ 448 (687)
...+.++++++|+++++++|+|++. ...||.+++.++.++|+++.+.|++.++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~D~~~~~r~~~~g~~~~~~~~~~~~ 192 (202)
T cd06433 139 GMPICHQATFFRRSLFEKYGGFDESYRIAADYDLLLRLLLAGKIFKYLPEVLAA 192 (202)
T ss_pred cCcccCcceEEEHHHHHHhCCCchhhCchhhHHHHHHHHHcCCceEecchhhhh
Confidence 1125677789999999999999864 4579999999999999999999887643
No 46
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.86 E-value=2.2e-20 Score=186.52 Aligned_cols=196 Identities=19% Similarity=0.122 Sum_probs=146.5
Q ss_pred EEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHH
Q 041566 236 LVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSA 315 (687)
Q Consensus 236 sViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~g 315 (687)
+|+||+||+++.+.++|+|+++|+|| ++||+|+||||+|.|.+++++...++ +..+.+. +...+.|+++++|.|
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~~--~~eiiVvddgS~d~t~~~~~~~~~~~---~~~~~~~-~~~~~~G~~~~~n~g 74 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTYK--NDELIISDDGSTDGTVEIIKEYIDKD---PFIIILI-RNGKNLGVARNFESL 74 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCCCcHHHHHHHHhcC---CceEEEE-eCCCCccHHHHHHHH
Confidence 68999999999999999999999998 48999999999999999888765432 1233333 344455699999999
Q ss_pred hcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhh--HHHHHhhcccc
Q 041566 316 MGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFH--FEVEQQVNGVF 393 (687)
Q Consensus 316 l~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~--~~~~~~~~~~~ 393 (687)
++ .+++|||+++|+|++++|++|++++..+..+++.+++++.....+.+............... .......
T Consensus 75 ~~---~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 147 (214)
T cd04196 75 LQ---AADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLL---- 147 (214)
T ss_pred HH---hCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHH----
Confidence 98 78999999999999999999999999976678989999876654443322111111010000 0001100
Q ss_pred ccccccccceEEEehhhhhhhCCCCCC-CccchHHHHHHHHHcCCeEEEEcceE
Q 041566 394 INFFGFNGTAGVWRIKALEECGGWLDR-TTVEDMDIAVRAHLCGWKFVYVNDVK 446 (687)
Q Consensus 394 ~~~~~~~G~~~~~Rr~aL~~iGGf~~~-~~~ED~~l~~rl~~~G~ri~~~~~a~ 446 (687)
....+.|+++++|+++++++|++++. ...||.++..++.. |.++.+++++.
T Consensus 148 -~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~~~~~~~ 199 (214)
T cd04196 148 -FQNVVTGCTMAFNRELLELALPFPDADVIMHDWWLALLASA-FGKVVFLDEPL 199 (214)
T ss_pred -HhCccCCceeeEEHHHHHhhccccccccccchHHHHHHHHH-cCceEEcchhH
Confidence 11125788899999999999999876 67899999998877 66888888765
No 47
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.85 E-value=2.7e-20 Score=185.01 Aligned_cols=176 Identities=16% Similarity=0.165 Sum_probs=143.1
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHh
Q 041566 237 VQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAM 316 (687)
Q Consensus 237 ViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl 316 (687)
|+||+||+++.++++|+|+.+|++|. .+|+|+||+|+|.|.+.+++..+ ..++.+...+.+ .|.+.++|.|+
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~~--~eiiivD~~s~d~t~~~~~~~~~-----~~~i~~~~~~~n-~g~~~~~n~~~ 72 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRPP--DHIIVIDNASTDGTAEWLTSLGD-----LDNIVYLRLPEN-LGGAGGFYEGV 72 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCCC--ceEEEEECCCCcchHHHHHHhcC-----CCceEEEECccc-cchhhHHHHHH
Confidence 68999999999999999999999985 57999999999999988876432 122444444444 44888888888
Q ss_pred cccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccccccc
Q 041566 317 GCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINF 396 (687)
Q Consensus 317 ~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 396 (687)
+....+++|+++++|+|++++|+++++++..+. +|+++++.+.....+.
T Consensus 73 ~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~------------------------------ 121 (202)
T cd04185 73 RRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD-KDNPQFLAPLVLDPDG------------------------------ 121 (202)
T ss_pred HHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh-cCCceEecceeEcCCC------------------------------
Confidence 754345899999999999999999999999998 6888888876433221
Q ss_pred cccccceEEEehhhhhhhCCCCCC--CccchHHHHHHHHHcCCeEEEEcceEEeeccCcCH
Q 041566 397 FGFNGTAGVWRIKALEECGGWLDR--TTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESY 455 (687)
Q Consensus 397 ~~~~G~~~~~Rr~aL~~iGGf~~~--~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~ 455 (687)
+++++++||++++++|++++. ..+||.+++.++.++|+++ ++|++.+++..+.+.
T Consensus 122 ---~~~~~~~~~~~~~~~g~~~~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~~ 178 (202)
T cd04185 122 ---SFVGVLISRRVVEKIGLPDKEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAINK 178 (202)
T ss_pred ---ceEEEEEeHHHHHHhCCCChhhhccchHHHHHHHHHHcCCcE-EecceEEEEcccccc
Confidence 234578999999999988764 3479999999999999999 999999988876653
No 48
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.85 E-value=6.2e-20 Score=178.89 Aligned_cols=176 Identities=22% Similarity=0.192 Sum_probs=135.7
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHh
Q 041566 237 VQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAM 316 (687)
Q Consensus 237 ViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl 316 (687)
|+||+||+++.++++|+|+.+|++++ .||+|+||+|+|.+.+++++..++ .+.++++..+.+...++++++|.|+
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~~--~eiivvdd~s~d~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n~g~ 75 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSILP--FEVIIADDGSTEETKELIEEFKSQ---FPIPIKHVWQEDEGFRKAKIRNKAI 75 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCCC--CEEEEEeCCCchhHHHHHHHHHhh---cCCceEEEEcCCcchhHHHHHHHHH
Confidence 68999999999999999999999876 679999999999999888765432 2333444434444446999999999
Q ss_pred cccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccccccc
Q 041566 317 GCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINF 396 (687)
Q Consensus 317 ~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 396 (687)
+ .+++|||+++|+|+.++|+++++++..+ ++++++++++.. .+.....
T Consensus 76 ~---~a~g~~i~~lD~D~~~~~~~l~~~~~~~--~~~~~v~g~~~~-~~~~~~~-------------------------- 123 (182)
T cd06420 76 A---AAKGDYLIFIDGDCIPHPDFIADHIELA--EPGVFLSGSRVL-LNEKLTE-------------------------- 123 (182)
T ss_pred H---HhcCCEEEEEcCCcccCHHHHHHHHHHh--CCCcEEecceee-cccccce--------------------------
Confidence 9 7899999999999999999999999988 366655554433 2221110
Q ss_pred cccccceEEEehhhhhhhCCCCCCCc---cchHHHHHHHHHcCCeEEEE-cceEEee
Q 041566 397 FGFNGTAGVWRIKALEECGGWLDRTT---VEDMDIAVRAHLCGWKFVYV-NDVKCLC 449 (687)
Q Consensus 397 ~~~~G~~~~~Rr~aL~~iGGf~~~~~---~ED~~l~~rl~~~G~ri~~~-~~a~~~~ 449 (687)
....|++++++|+.+.++|||++... .||++++.|+.++|++...+ +++.+++
T Consensus 124 ~~~~~~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~~~~~~~~h 180 (182)
T cd06420 124 RGIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKFAAIVFH 180 (182)
T ss_pred eEeccceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEecccceeee
Confidence 12467788899999999999987654 69999999999999655555 4666654
No 49
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.84 E-value=1.7e-20 Score=190.93 Aligned_cols=202 Identities=20% Similarity=0.207 Sum_probs=140.7
Q ss_pred EEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHH
Q 041566 237 VQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSA 315 (687)
Q Consensus 237 ViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~g 315 (687)
++||+|||+ +.+.+||+|+.+| . .+|+|+||+|+|.+.+..+. ...++.++..+.+ .|+++|+|.|
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q---~--~~iivvDn~s~~~~~~~~~~-------~~~~i~~i~~~~n-~G~~~a~N~g 67 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ---V--DKVVVVDNSSGNDIELRLRL-------NSEKIELIHLGEN-LGIAKALNIG 67 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc---C--CEEEEEeCCCCccHHHHhhc-------cCCcEEEEECCCc-eehHHhhhHH
Confidence 589999999 9999999999998 2 56899999999877654432 1234444444444 4599999999
Q ss_pred hcccccCCccEEEEEcCCCCCCHHHHHHHH---HHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccc
Q 041566 316 MGCDYVKDYEFVAIFDADFQPTPDFLKKTI---PYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGV 392 (687)
Q Consensus 316 l~~~~~a~~d~V~~lDaD~~~~pd~L~~lv---~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~ 392 (687)
++.+...++|||+++|+|+.++|++|++++ ..+..+++++++++.....+.... ........... ...... ...
T Consensus 68 ~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~-~~~ 144 (237)
T cd02526 68 IKAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGEN-SPGVRKSGYKL-RIQKEG-EEG 144 (237)
T ss_pred HHHHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCee-ccceeccCccc-eecccc-cCC
Confidence 994222245999999999999999999994 556667888877765433222211 11111111000 000000 011
Q ss_pred cccccccccceEEEehhhhhhhCCCCCCCc--cchHHHHHHHHHcCCeEEEEcceEEeeccCcC
Q 041566 393 FINFFGFNGTAGVWRIKALEECGGWLDRTT--VEDMDIAVRAHLCGWKFVYVNDVKCLCELPES 454 (687)
Q Consensus 393 ~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~--~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t 454 (687)
........|+++++||++++++|||++... .||.+++.|+.++|+++.++|++.+++..+.+
T Consensus 145 ~~~~~~~~~~~~~~rr~~~~~~ggfd~~~~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~~~~~ 208 (237)
T cd02526 145 LKEVDFLITSGSLISLEALEKVGGFDEDLFIDYVDTEWCLRARSKGYKIYVVPDAVLKHELGDK 208 (237)
T ss_pred ceEeeeeeccceEEcHHHHHHhCCCCHHHcCccchHHHHHHHHHcCCcEEEEcCeEEEecccCc
Confidence 111122457788999999999999987654 68999999999999999999999998887665
No 50
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.84 E-value=5.1e-20 Score=175.69 Aligned_cols=163 Identities=18% Similarity=0.259 Sum_probs=140.1
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHh
Q 041566 237 VQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAM 316 (687)
Q Consensus 237 ViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl 316 (687)
|+||+||+++.++++++|+.+|+++. .+|+|+||++++.+.+.+++. ..++.+...+ .+.|+++++|.|+
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~~~--~~iiivdd~s~~~~~~~~~~~-------~~~~~~~~~~-~~~g~~~a~n~~~ 70 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTYPD--FEVIVVDNASTDGSVELLREL-------FPEVRLIRNG-ENLGFGAGNNQGI 70 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccCCC--eEEEEEECCCCchHHHHHHHh-------CCCeEEEecC-CCcChHHHhhHHH
Confidence 68999999999999999999999854 779999999999988877642 1134444333 3456999999999
Q ss_pred cccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccccccc
Q 041566 317 GCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINF 396 (687)
Q Consensus 317 ~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 396 (687)
+ .+++|+++++|+|+.++|+++.+++..+.++++++++++.
T Consensus 71 ~---~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------ 111 (166)
T cd04186 71 R---EAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------------ 111 (166)
T ss_pred h---hCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------------
Confidence 9 5699999999999999999999999988888999888876
Q ss_pred cccccceEEEehhhhhhhCCCCCCC--ccchHHHHHHHHHcCCeEEEEcceEEeec
Q 041566 397 FGFNGTAGVWRIKALEECGGWLDRT--TVEDMDIAVRAHLCGWKFVYVNDVKCLCE 450 (687)
Q Consensus 397 ~~~~G~~~~~Rr~aL~~iGGf~~~~--~~ED~~l~~rl~~~G~ri~~~~~a~~~~e 450 (687)
..|+++++|+++++++|||++.. ..||.+++.++.++|+++.++|++.+++.
T Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~~~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 112 --VSGAFLLVRREVFEEVGGFDEDFFLYYEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred --CceeeEeeeHHHHHHcCCCChhhhccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 47889999999999999998754 56999999999999999999999988764
No 51
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.84 E-value=1.9e-19 Score=181.54 Aligned_cols=202 Identities=13% Similarity=0.061 Sum_probs=143.2
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHh
Q 041566 237 VQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAM 316 (687)
Q Consensus 237 ViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl 316 (687)
|+||+|||++.+.++|+|+.+|.++ ...||+||||+|+|++.+++++..++ ..++..... ..++|++.|+|.|+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~-~~~eiiiVDd~S~d~t~~~~~~~~~~----~~~i~~~~~-~~n~G~~~a~n~g~ 74 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKG-IDYEIIVVDDNSPDGTAEIVRELAKE----YPRVRLIVR-PGKRGLGSAYIEGF 74 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhcC-CCeEEEEEeCCCCCChHHHHHHHHHh----CCceEEEec-CCCCChHHHHHHHH
Confidence 6899999999999999999999982 24899999999999999888765442 223333333 34566999999999
Q ss_pred cccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCC-CChhHHhhhhhhhhhHHHHHhhcccccc
Q 041566 317 GCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKD-ENLLTRLQNINLSFHFEVEQQVNGVFIN 395 (687)
Q Consensus 317 ~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 395 (687)
+ .+++|+|+++|+|++++|++++.++..+.. ++.++|.|........ .++.. .............+.. ....
T Consensus 75 ~---~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~ 147 (224)
T cd06442 75 K---AARGDVIVVMDADLSHPPEYIPELLEAQLE-GGADLVIGSRYVEGGGVEGWGL-KRKLISRGANLLARLL--LGRK 147 (224)
T ss_pred H---HcCCCEEEEEECCCCCCHHHHHHHHHHHhc-CCCCEEEEeeeecCCccCCCcH-HHHHHHHHHHHHHHHH--cCCC
Confidence 9 688999999999999999999999999764 5566676654332221 11100 0000000000111111 1112
Q ss_pred ccccccceEEEehhhhhhhC-CCCCCCccchHHHHHHHHHcCCeEEEEcceEEeecc
Q 041566 396 FFGFNGTAGVWRIKALEECG-GWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCEL 451 (687)
Q Consensus 396 ~~~~~G~~~~~Rr~aL~~iG-Gf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~ 451 (687)
.....|++.++||++++++| ++......+|.+++.++.+.|+++.++|.....+..
T Consensus 148 ~~~~~~~~~~~~r~~~~~ig~~~~~~~~~~~~~l~~~~~~~g~~i~~~p~~~~~~~~ 204 (224)
T cd06442 148 VSDPTSGFRAYRREVLEKLIDSLVSKGYKFQLELLVRARRLGYRIVEVPITFVDREH 204 (224)
T ss_pred CCCCCCccchhhHHHHHHHhhhccCCCcEEeHHHHHHHHHcCCeEEEeCeEEeccCC
Confidence 22356777899999999998 555556678899999999999999999988765543
No 52
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.83 E-value=2.6e-20 Score=177.75 Aligned_cols=180 Identities=29% Similarity=0.416 Sum_probs=134.7
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHh
Q 041566 237 VQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAM 316 (687)
Q Consensus 237 ViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl 316 (687)
|+||+||+++.+.++|+|+.+|.++. .+|+|+||+|+|.+.+.+++...+ ....+.+.. ..++.|++.++|.|+
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~~~--~~iivvdd~s~d~t~~~~~~~~~~---~~~~~~~~~-~~~~~g~~~~~n~~~ 74 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDYPK--LEVIVVDDGSTDDTLEILEELAAL---YIRRVLVVR-DKENGGKAGALNAGL 74 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCCCc--eEEEEEeCCCccchHHHHHHHhcc---ccceEEEEE-ecccCCchHHHHHHH
Confidence 68999999999999999999999865 789999999999999888764432 112333443 334566999999999
Q ss_pred cccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccccccc
Q 041566 317 GCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINF 396 (687)
Q Consensus 317 ~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 396 (687)
+ .+++|+|+++|+|+.++|+++++++..+..+++++++++.....+...++........+.................
T Consensus 75 ~---~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
T cd06423 75 R---HAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGV 151 (180)
T ss_pred H---hcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecce
Confidence 9 6799999999999999999999997777778999999998776655434443333322221111111111112233
Q ss_pred cccccceEEEehhhhhhhCCCCCCCccch
Q 041566 397 FGFNGTAGVWRIKALEECGGWLDRTTVED 425 (687)
Q Consensus 397 ~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED 425 (687)
..++|+++++|+++++++|||++..++||
T Consensus 152 ~~~~g~~~~~~~~~~~~~ggf~~~~~~eD 180 (180)
T cd06423 152 LVLSGAFGAFRREALREVGGWDEDTLTED 180 (180)
T ss_pred eecCchHHHHHHHHHHHhCCccccCcCCC
Confidence 45789999999999999999999999998
No 53
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.83 E-value=4.2e-19 Score=178.60 Aligned_cols=184 Identities=15% Similarity=0.187 Sum_probs=134.6
Q ss_pred EEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHH
Q 041566 235 VLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNS 314 (687)
Q Consensus 235 VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~ 314 (687)
|+|+||+||+++.+.++|+|+.+|+++. ++|+|+||+|+|++.+.+++ .++.+.. . +.|++.++|.
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~~~--~evivvdd~s~d~~~~~~~~---------~~~~~~~--~-~~g~~~a~n~ 66 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNPLP--LEIIVVDGGSTDGTVAIARS---------AGVVVIS--S-PKGRARQMNA 66 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccCCC--cEEEEEeCCCCccHHHHHhc---------CCeEEEe--C-CcCHHHHHHH
Confidence 6899999999999999999999999854 78999999999999887753 2333332 2 3458999999
Q ss_pred HhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccccc
Q 041566 315 AMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFI 394 (687)
Q Consensus 315 gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 394 (687)
|++ .+++|+|+++|+|+.++|+++++++..+.. ++..++.......+. +...+..... .......
T Consensus 67 g~~---~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~--------~~~~~~~- 131 (221)
T cd02522 67 GAA---AARGDWLLFLHADTRLPPDWDAAIIETLRA-DGAVAGAFRLRFDDP--GPRLRLLELG--------ANLRSRL- 131 (221)
T ss_pred HHH---hccCCEEEEEcCCCCCChhHHHHHHHHhhc-CCcEEEEEEeeecCC--ccchhhhhhc--------ccceecc-
Confidence 999 678999999999999999999999887764 444444443333332 2111111100 0000000
Q ss_pred cccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHHcCCeEEEEcceEEe
Q 041566 395 NFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKCL 448 (687)
Q Consensus 395 ~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~ 448 (687)
....+.+.++++|+++++++|||++....||.+++.|+.+.|+++.+ +.+.+.
T Consensus 132 ~~~~~~~~~~~~r~~~~~~~G~fd~~~~~ED~d~~~r~~~~G~~~~~-~~~~~~ 184 (221)
T cd02522 132 FGLPYGDQGLFIRRELFEELGGFPELPLMEDVELVRRLRRRGRPALL-PSPVTT 184 (221)
T ss_pred cCCCcCCceEEEEHHHHHHhCCCCccccccHHHHHHHHHhCCCEEEc-Cceeee
Confidence 11123466789999999999999988889999999999999999877 555443
No 54
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.83 E-value=6.7e-19 Score=184.08 Aligned_cols=226 Identities=16% Similarity=0.107 Sum_probs=148.4
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHh
Q 041566 231 DYPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAG 310 (687)
Q Consensus 231 ~~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~ 310 (687)
..|.|||+||+||+++.+.++|+|+++|+||+ +||+||||||++ .+.+++..+++ .+.++.+...+ .++|++.
T Consensus 3 ~~p~VSVIip~yN~~~~l~~~l~Svl~Qt~~~--~EiIVVDDgS~~--~~~~~~~~~~~--~~~ri~~i~~~-~n~G~~~ 75 (279)
T PRK10018 3 DNPLISIYMPTWNRQQLAIRAIKSVLRQDYSN--WEMIIVDDCSTS--WEQLQQYVTAL--NDPRITYIHND-INSGACA 75 (279)
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCC--eEEEEEECCCCC--HHHHHHHHHHc--CCCCEEEEECC-CCCCHHH
Confidence 36899999999999999999999999999986 889999999984 33444444432 23456655444 4556999
Q ss_pred HHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhh-h-hhhHHHHHh
Q 041566 311 NLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNIN-L-SFHFEVEQQ 388 (687)
Q Consensus 311 aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~-~-~~~~~~~~~ 388 (687)
|+|.|++ .++||||+++|+|+.++|+.|++++..+...++.+++.+....... .. ........ + ...+.....
T Consensus 76 a~N~gi~---~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~p~~~~~~~~~ 150 (279)
T PRK10018 76 VRNQAIM---LAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYANDYVCQG-EV-YSQPASLPLYPKSPYSRRLF 150 (279)
T ss_pred HHHHHHH---HcCCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEccceeecC-cc-cccccccCCCCCCCCCHHHH
Confidence 9999999 7899999999999999999999999998765666666654322111 10 00000000 0 000000000
Q ss_pred hccccccccccccceEEEehhhhhhhCCCCCC-CccchHHHHHHHHHcCCeEEEEcceE-EeeccCcCHHHHHHHHHHhh
Q 041566 389 VNGVFINFFGFNGTAGVWRIKALEECGGWLDR-TTVEDMDIAVRAHLCGWKFVYVNDVK-CLCELPESYEAYKKQQHRWH 466 (687)
Q Consensus 389 ~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~-~~~ED~~l~~rl~~~G~ri~~~~~a~-~~~e~P~t~~~~~~Qr~RW~ 466 (687)
.. .++.|+..+.++..+.+ ++|++. ...||+++++|+..+|++...+|++. .++..+.+.+.-....+ .
T Consensus 151 ~~------~n~ig~~~~~~~~~~~~-~~fd~~~~~~eDydlwlrl~~~~~~~~~~~~~l~~y~~~~~s~~~~~s~~k--~ 221 (279)
T PRK10018 151 YK------RNIIGNQVFTWAWRFKE-CLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSSPKK--F 221 (279)
T ss_pred HH------hcCcCceeeehhhhhhh-cccCCCCCccccHHHHHHHHHhcCceEeeccceEEEEcCCCCccccCCHHH--H
Confidence 00 11345556666666654 578654 44899999999999999999999885 44444555421111111 3
Q ss_pred cccHHHHHHHh
Q 041566 467 SGPMQLFRMCF 477 (687)
Q Consensus 467 ~G~~q~~~~~~ 477 (687)
.+.+++++++.
T Consensus 222 ~~~~~~~rk~~ 232 (279)
T PRK10018 222 SGYFHFYRKHK 232 (279)
T ss_pred HHHHHHHHHhh
Confidence 44446666654
No 55
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.82 E-value=2.4e-19 Score=192.19 Aligned_cols=200 Identities=16% Similarity=0.186 Sum_probs=141.5
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhH
Q 041566 232 YPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGN 311 (687)
Q Consensus 232 ~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~a 311 (687)
.|.|||+||+||+++.+++||+|+.+|+|++ +||+||||||+|.+.+++++..+ ...++.+.+. .++|.+.|
T Consensus 5 ~p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~--~EIIiVdDgStD~t~~i~~~~~~----~~~~i~vi~~--~n~G~~~a 76 (328)
T PRK10073 5 TPKLSIIIPLYNAGKDFRAFMESLIAQTWTA--LEIIIVNDGSTDNSVEIAKHYAE----NYPHVRLLHQ--ANAGVSVA 76 (328)
T ss_pred CCeEEEEEeccCCHHHHHHHHHHHHhCCCCC--eEEEEEeCCCCccHHHHHHHHHh----hCCCEEEEEC--CCCChHHH
Confidence 5899999999999999999999999999985 88999999999999998887654 3334444442 35679999
Q ss_pred HHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeee--ccCCCC--hh--HHhhhhhh-hhhHH
Q 041566 312 LNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSF--VNKDEN--LL--TRLQNINL-SFHFE 384 (687)
Q Consensus 312 Ln~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~--~n~~~~--~~--~r~~~~~~-~~~~~ 384 (687)
.|.|++ .++||||+++|+|+.++|+++++++..+.+ ++.+++.+.... .+.... .. .+...... .....
T Consensus 77 rN~gl~---~a~g~yi~flD~DD~~~p~~l~~l~~~~~~-~~~dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (328)
T PRK10073 77 RNTGLA---VATGKYVAFPDADDVVYPTMYETLMTMALE-DDLDVAQCNADWCFRDTGETWQSIPSDRLRSTGVLSGPDW 152 (328)
T ss_pred HHHHHH---hCCCCEEEEECCCCccChhHHHHHHHHHHh-CCCCEEEEccEEEEeCCCccccccccccccccceechHHH
Confidence 999999 789999999999999999999999998874 444444433222 221110 00 00000000 00000
Q ss_pred HHHhhccccccccccccceEEEehhhhhhhC-CCCCCCccchHHHHHHHHHcCCeEEEEcceE
Q 041566 385 VEQQVNGVFINFFGFNGTAGVWRIKALEECG-GWLDRTTVEDMDIAVRAHLCGWKFVYVNDVK 446 (687)
Q Consensus 385 ~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iG-Gf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~ 446 (687)
....... ..+.....+.++||+.+++.| .|++....||..++.++..++.++.+++++.
T Consensus 153 l~~~l~~---~~~~~~~~~~l~Rr~~l~~~~~~f~~~~~~eD~~~~~~~~~~~~~v~~~~~~l 212 (328)
T PRK10073 153 LRMALSS---RRWTHVVWLGVYRRDFIVKNNIKFEPGLHHQDIPWTTEVMFNALRVRYTEQSL 212 (328)
T ss_pred HHHHHhh---CCCCccHhHHHHHHHHHHHcCCccCCCCEeccHHHHHHHHHHCCEEEEECCCE
Confidence 0111111 011112335689999999987 4666666799999999999999999999876
No 56
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=99.79 E-value=5.2e-18 Score=193.54 Aligned_cols=149 Identities=20% Similarity=0.312 Sum_probs=133.8
Q ss_pred CCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhcccccccccccc
Q 041566 322 KDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINFFGFNG 401 (687)
Q Consensus 322 a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G 401 (687)
..-+||+++|+|+.++|+.+.++++.|+.||++|+++| ...|..++++...|+++|..++...+..++.++.+.|.+|
T Consensus 439 ~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG--~I~~~~~~w~v~~Q~FEY~Ish~l~Ka~ESvFG~VsclPG 516 (862)
T KOG2571|consen 439 PSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACG--RILNKGGSWVVAYQNFEYAISHNLQKATESVFGCVSCLPG 516 (862)
T ss_pred CcceEEEEecCCCccCcHHHHHHHHHhccCcccceecc--ccccCCCceEEeHHHHHHHHHHHHHHhhhhhceeEEecCc
Confidence 45579999999999999999999999999999999999 4677788999999999999999999999999999999999
Q ss_pred ceEEEehhhhhhhC----------C---CCCCCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHHHHhhcc
Q 041566 402 TAGVWRIKALEECG----------G---WLDRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWHSG 468 (687)
Q Consensus 402 ~~~~~Rr~aL~~iG----------G---f~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~G 468 (687)
+.++||.++|.+-- + ......+||..|+.++..+||++.|++.+.+.+++|+++.+++.||+||..|
T Consensus 517 cfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~Y~a~s~a~t~~Pe~~~efl~QrrRW~~s 596 (862)
T KOG2571|consen 517 CFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLKYVAASDAETEAPESFLEFLNQRRRWLNS 596 (862)
T ss_pred hhHHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhccceeeeeccccccccCcHhHHHHHHHhhhhccc
Confidence 99999998887521 0 1123478999999999999999999999999999999999999999999999
Q ss_pred cHHH
Q 041566 469 PMQL 472 (687)
Q Consensus 469 ~~q~ 472 (687)
.+.+
T Consensus 597 ~f~~ 600 (862)
T KOG2571|consen 597 IFNA 600 (862)
T ss_pred chhH
Confidence 5554
No 57
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.79 E-value=4.6e-18 Score=170.48 Aligned_cols=202 Identities=15% Similarity=0.098 Sum_probs=138.6
Q ss_pred EEeecCCchHHHHHHHHHHHcCCC--CCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHH
Q 041566 237 VQIPMCNEREVYGQSIAAVCIQDW--PKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNS 314 (687)
Q Consensus 237 ViIP~yNE~~~l~~tL~Sl~~q~y--P~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~ 314 (687)
|+||+|||++.+.++|+++.+|.+ +....||+|+||+|+|.+.+++++..++++ ..+.+..... +.|+++|+|.
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~---~~i~~i~~~~-n~G~~~a~~~ 76 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNP---ALIRVLTLPK-NRGKGGAVRA 76 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCC---CcEEEEEccc-CCCcHHHHHH
Confidence 689999999999999999998865 333589999999999999999887655332 2233343333 4459999999
Q ss_pred HhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCC----CChhHHhhhhhhhhhHHHHHhhc
Q 041566 315 AMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKD----ENLLTRLQNINLSFHFEVEQQVN 390 (687)
Q Consensus 315 gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~----~~~~~r~~~~~~~~~~~~~~~~~ 390 (687)
|++ .+++|+|+++|+|.+++|+++.+++..+.+ ++.++|.|.......+ ..+.......... . ......
T Consensus 77 g~~---~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~-~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~ 149 (211)
T cd04188 77 GML---AARGDYILFADADLATPFEELEKLEEALKT-SGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFN--F-LVRLLL 149 (211)
T ss_pred HHH---HhcCCEEEEEeCCCCCCHHHHHHHHHHHhc-cCCcEEEEEeeccCCcccccccHHHHHHHHHHH--H-HHHHHc
Confidence 999 688999999999999999999999999764 4455666654433221 1222222211111 1 111111
Q ss_pred cccccccccccceEEEehhhhhhhCCC-CCCCccchHHHHHHHHHcCCeEEEEcceEEeeccCc
Q 041566 391 GVFINFFGFNGTAGVWRIKALEECGGW-LDRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPE 453 (687)
Q Consensus 391 ~~~~~~~~~~G~~~~~Rr~aL~~iGGf-~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~ 453 (687)
+. ..........++||++++++++. ......+|.++..++.+.|+++.++|- .+.+.|.
T Consensus 150 ~~--~~~d~~~g~~~~~r~~~~~~~~~~~~~~~~~d~el~~r~~~~g~~~~~vpi--~~~~~~~ 209 (211)
T cd04188 150 GL--GIKDTQCGFKLFTRDAARRLFPRLHLERWAFDVELLVLARRLGYPIEEVPV--RWVEIPG 209 (211)
T ss_pred CC--CCcccccCceeEcHHHHHHHHhhhhccceEeeHHHHHHHHHcCCeEEEcCc--ceecCCC
Confidence 11 11111223478999999998653 344567899999999999999999983 3444443
No 58
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.79 E-value=6.6e-18 Score=174.09 Aligned_cols=192 Identities=10% Similarity=-0.000 Sum_probs=131.0
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCC-CCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhH
Q 041566 233 PMVLVQIPMCNEREVYGQSIAAVCIQD-WPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGN 311 (687)
Q Consensus 233 P~VsViIP~yNE~~~l~~tL~Sl~~q~-yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~a 311 (687)
|.||||||+||+++.+++||+|+.+|. .+...+||+|+||||+|+|.+++++... . .++.++. .+ ++|+++|
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~----~-~~i~~i~-~~-~~G~~~A 73 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNG----I-FNLRFVS-EP-DNGIYDA 73 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcc----c-CCEEEEE-CC-CCCHHHH
Confidence 679999999999999999999998532 1222489999999999999998875421 1 1233443 33 3469999
Q ss_pred HHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhcc
Q 041566 312 LNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNG 391 (687)
Q Consensus 312 Ln~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~ 391 (687)
+|.|++ .+++|||+++|+|+.++|+.++.+.....++++. ++.|.......+.....+... .......
T Consensus 74 ~N~Gi~---~a~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~-~v~g~~~~~~~~~~~~~~~~~-------~~~~~~~- 141 (248)
T PRK10063 74 MNKGIA---MAQGRFALFLNSGDIFHQDAANFVRQLKMQKDNA-MIIGDALLDFGDGHKIKRSAK-------PGWYIYH- 141 (248)
T ss_pred HHHHHH---HcCCCEEEEEeCCcccCcCHHHHHHHHHhCCCCe-EEEeeeEEEcCCCcEEEEccC-------ChhHHhc-
Confidence 999999 6899999999999999998765444433333444 444443322111111111000 0000000
Q ss_pred ccccccccccceEEEehhhhhhhCCCCCC-CccchHHHHHHHHHcCCeEEEEcceEEe
Q 041566 392 VFINFFGFNGTAGVWRIKALEECGGWLDR-TTVEDMDIAVRAHLCGWKFVYVNDVKCL 448 (687)
Q Consensus 392 ~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~-~~~ED~~l~~rl~~~G~ri~~~~~a~~~ 448 (687)
....++.+.++|++.++. |+|++. ...||++++.|+..+|+++.++|...+.
T Consensus 142 ----~~~~~~~~~~~~~~~~~~-~~fd~~~~~~~Dydl~lrl~~~g~~~~~v~~~l~~ 194 (248)
T PRK10063 142 ----SLPASHQAIFFPVSGLKK-WRYDLQYKVSSDYALAARLYKAGYAFKKLNGLVSE 194 (248)
T ss_pred ----CCCCCCcEEEEEHHHHhc-CCCCcccchHHhHHHHHHHHHcCCcEEEcCceeEE
Confidence 112457788999998875 678754 4579999999999999999999988754
No 59
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.78 E-value=9.2e-17 Score=172.49 Aligned_cols=209 Identities=14% Similarity=0.063 Sum_probs=141.8
Q ss_pred CCCCCeEEEEeecCCchHHHHHHHHHHHcCC------CCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEecc
Q 041566 229 LEDYPMVLVQIPMCNEREVYGQSIAAVCIQD------WPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRL 302 (687)
Q Consensus 229 ~~~~P~VsViIP~yNE~~~l~~tL~Sl~~q~------yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~ 302 (687)
.+..|.++|+||+|||++.++++++++.++. .|...+||+||||||+|.|.+++++..++....+.++.....+
T Consensus 66 ~~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~ 145 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLL 145 (333)
T ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcC
Confidence 3456799999999999999999999987632 3444689999999999999999887665431122234444333
Q ss_pred CCCCChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHcc--CCCeEEEeeeeeeccCC-----CChhHHhh
Q 041566 303 IRSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKG--NDDLALVQTRWSFVNKD-----ENLLTRLQ 375 (687)
Q Consensus 303 ~~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~--~p~vg~Vqg~~~~~n~~-----~~~~~r~~ 375 (687)
++.||++|+|.|++ .+++|+|+++|+|.+.+|+.+.+++..+.+ ++++++|.|.......+ .++..+..
T Consensus 146 -~N~G~~~A~~~Gi~---~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~ 221 (333)
T PTZ00260 146 -RNKGKGGAVRIGML---ASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNIL 221 (333)
T ss_pred -CCCChHHHHHHHHH---HccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHH
Confidence 45569999999999 689999999999999999999999998864 47788888865432211 12332222
Q ss_pred hhhhhhhHHHHHhhccccccccccccceEEEehhhhhhhC-CCCCCCccchHHHHHHHHHcCCeEEEEcceE
Q 041566 376 NINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECG-GWLDRTTVEDMDIAVRAHLCGWKFVYVNDVK 446 (687)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iG-Gf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~ 446 (687)
.. .++.......+..... .....-+|||++++++- ........-|.++..++.+.|+++..+|-..
T Consensus 222 ~~--~~~~l~~~~~~~~i~D---~~~Gfk~~~r~~~~~i~~~~~~~~~~fd~Ell~~a~~~g~~I~EvPv~~ 288 (333)
T PTZ00260 222 MY--GFHFIVNTICGTNLKD---TQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVPVNW 288 (333)
T ss_pred HH--HHHHHHHHHcCCCccc---CCCCeEEEeHHHHHHHhhhccccCccchHHHHHHHHHcCCCEEEEceee
Confidence 11 1111111111111111 12233688999998761 1112233468899999999999999998653
No 60
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.76 E-value=1.7e-17 Score=176.42 Aligned_cols=213 Identities=19% Similarity=0.265 Sum_probs=153.6
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhH
Q 041566 232 YPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGN 311 (687)
Q Consensus 232 ~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~a 311 (687)
.|.++++|++||..+.+.+|+.++.+|+|+.+. ++++||+|+|.+.+.+++.. ..++.++...+|.| =+++
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~--iv~vDn~s~d~~~~~~~~~~------~~~v~~i~~~~NlG-~agg 72 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYPDDV--IVVVDNGSTDGSLEALKARF------FPNVRLIENGENLG-FAGG 72 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCCCcE--EEEccCCCCCCCHHHHHhhc------CCcEEEEEcCCCcc-chhh
Confidence 478999999999999999999999999999743 55899999999998887421 45666665555544 7788
Q ss_pred HHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhh-h--hhhhhH--HHH
Q 041566 312 LNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQN-I--NLSFHF--EVE 386 (687)
Q Consensus 312 Ln~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~-~--~~~~~~--~~~ 386 (687)
.|.|++.+.....+|+++++.|+.++|++|++++..++.++..+++++.....+... ....... . ...... ...
T Consensus 73 ~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 151 (305)
T COG1216 73 FNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESL-YIDRRGGESDGLTGGWRASPLL 151 (305)
T ss_pred hhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCc-chheeccccccccccceecccc
Confidence 888888532222339999999999999999999999999889888887765433221 1111110 0 000000 000
Q ss_pred Hhhc--ccccccc-ccccceEEEehhhhhhhCCCCCCCc--cchHHHHHHHHHcCCeEEEEcceEEeeccCcC
Q 041566 387 QQVN--GVFINFF-GFNGTAGVWRIKALEECGGWLDRTT--VEDMDIAVRAHLCGWKFVYVNDVKCLCELPES 454 (687)
Q Consensus 387 ~~~~--~~~~~~~-~~~G~~~~~Rr~aL~~iGGf~~~~~--~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t 454 (687)
.... ....... -++|+++++|+++++++|+|+++.+ .||.|++.|+.+.||++.++|++.+++..-.+
T Consensus 152 ~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de~~F~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s 224 (305)
T COG1216 152 EIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDERFFIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSS 224 (305)
T ss_pred cccccccchhhhhhhcceeeeEEcHHHHHHhCCCCcccceeehHHHHHHHHHHcCCeEEEeeccEEEEeccCC
Confidence 0000 0000111 1689999999999999999998544 79999999999999999999999988865443
No 61
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.76 E-value=9.6e-18 Score=163.45 Aligned_cols=163 Identities=21% Similarity=0.310 Sum_probs=131.7
Q ss_pred EEEEeccCCCCChHhHHHHHhccccc-CCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHh
Q 041566 296 IIYRHRLIRSGYKAGNLNSAMGCDYV-KDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRL 374 (687)
Q Consensus 296 i~~~~r~~~~ggKa~aLn~gl~~~~~-a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~ 374 (687)
++.-..+...++|.+||..+++ . +++|++++.|+|+.++||+|++++..+++ |++|+|++.....+. +++.+++
T Consensus 6 lvv~~~~~g~N~Kv~nL~~~~~---~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~-p~vglVt~~~~~~~~-~~~~~~l 80 (175)
T PF13506_consen 6 LVVGGPPRGCNPKVNNLAQGLE---AGAKYDYLVISDSDIRVPPDYLRELVAPLAD-PGVGLVTGLPRGVPA-RGFWSRL 80 (175)
T ss_pred EEECCCCCCCChHHHHHHHHHH---hhCCCCEEEEECCCeeECHHHHHHHHHHHhC-CCCcEEEecccccCC-cCHHHHH
Confidence 4443444556689999999999 5 89999999999999999999999999985 999999997765554 4666666
Q ss_pred hhhhhhhhHHHHHhhccccccccccccceEEEehhhhhhhCCCCC--CCccchHHHHHHHHHcCCeEEEEcceEEeeccC
Q 041566 375 QNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECGGWLD--RTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELP 452 (687)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~--~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P 452 (687)
.......+....+. .....+..|.++++||++|+++|||.. +.++||+.++.++.++|+++...+.+.+.+..|
T Consensus 81 ~~~~~~~~~~~~~a----~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~~ladD~~l~~~~~~~G~~v~~~~~~v~~~~~~ 156 (175)
T PF13506_consen 81 EAAFFNFLPGVLQA----LGGAPFAWGGSMAFRREALEEIGGFEALADYLADDYALGRRLRARGYRVVLSPYPVVQTSVP 156 (175)
T ss_pred HHHHHhHHHHHHHH----hcCCCceecceeeeEHHHHHHcccHHHHhhhhhHHHHHHHHHHHCCCeEEEcchheeecccC
Confidence 54433333333333 223344789999999999999999974 678999999999999999999999888777777
Q ss_pred ----cCHHHHHHHHHHhhc
Q 041566 453 ----ESYEAYKKQQHRWHS 467 (687)
Q Consensus 453 ----~t~~~~~~Qr~RW~~ 467 (687)
.+++++++++.||++
T Consensus 157 ~~~~~s~~~~~~r~~RW~r 175 (175)
T PF13506_consen 157 RTLEDSFRDFFRRQLRWAR 175 (175)
T ss_pred ccccccHHHHHHHHHhhcC
Confidence 489999999999985
No 62
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.73 E-value=4.6e-17 Score=170.88 Aligned_cols=200 Identities=16% Similarity=0.109 Sum_probs=132.9
Q ss_pred cCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhccc
Q 041566 241 MCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCD 319 (687)
Q Consensus 241 ~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~ 319 (687)
+||++ +.++++|+|+.+|. .+|+||||+|+++ +.+++.. ....++.+.+.+. +.|.++|+|.|++.+
T Consensus 2 tyn~~~~~l~~~l~sl~~q~-----~~iiVVDN~S~~~--~~~~~~~----~~~~~i~~i~~~~-N~G~a~a~N~Gi~~a 69 (281)
T TIGR01556 2 TFNPDLEHLGELITSLPKQV-----DRIIAVDNSPHSD--QPLKNAR----LRGQKIALIHLGD-NQGIAGAQNQGLDAS 69 (281)
T ss_pred ccCccHHHHHHHHHHHHhcC-----CEEEEEECcCCCc--HhHHHHh----ccCCCeEEEECCC-CcchHHHHHHHHHHH
Confidence 79975 89999999999985 3599999998654 1122211 1224455555444 445999999999854
Q ss_pred ccCCccEEEEEcCCCCCCHHHHHHHHHHHccCC-CeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccccccccc
Q 041566 320 YVKDYEFVAIFDADFQPTPDFLKKTIPYFKGND-DLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINFFG 398 (687)
Q Consensus 320 ~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p-~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (687)
...++|||+++|+|+.++++++++++..+..++ +++++++.....+ +......................... .....
T Consensus 70 ~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 147 (281)
T TIGR01556 70 FRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRG-TSRRLPAIHLDGLLLRQISLDGLTTP-QKTSF 147 (281)
T ss_pred HHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCC-CcccCCceeecccceeeecccccCCc-eeccE
Confidence 345789999999999999999999999998655 7888776542211 11111000000000000000000000 01111
Q ss_pred cccceEEEehhhhhhhCCCCCCCc--cchHHHHHHHHHcCCeEEEEcceEEeeccCcC
Q 041566 399 FNGTAGVWRIKALEECGGWLDRTT--VEDMDIAVRAHLCGWKFVYVNDVKCLCELPES 454 (687)
Q Consensus 399 ~~G~~~~~Rr~aL~~iGGf~~~~~--~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t 454 (687)
..++++++|+++++++|+|+++.+ .||.|+++|+.++|+++.++|++.+++....+
T Consensus 148 ~~~sg~li~~~~~~~iG~fde~~fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H~~g~~ 205 (281)
T TIGR01556 148 LISSGCLITREVYQRLGMMDEELFIDHVDTEWSLRAQNYGIPLYIDPDIVLEHRIGDS 205 (281)
T ss_pred EEcCcceeeHHHHHHhCCccHhhcccchHHHHHHHHHHCCCEEEEeCCEEEEEecCCc
Confidence 245567899999999999988654 68999999999999999999999988876554
No 63
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.73 E-value=4.4e-17 Score=159.04 Aligned_cols=180 Identities=14% Similarity=0.071 Sum_probs=127.8
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHh
Q 041566 237 VQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAM 316 (687)
Q Consensus 237 ViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl 316 (687)
|+||+||+++.+.++|+|+.+|.++....||+|+||+|+|.+.+.+++..+++ ..+.+...+.+ .|+++|+|.|+
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~----~~~~~~~~~~n-~G~~~a~n~g~ 75 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARV----PRVRVIRLSRN-FGKGAAVRAGF 75 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhC----CCeEEEEccCC-CCccHHHHHHH
Confidence 68999999999999999999999854468999999999999999888765433 23334444444 45999999999
Q ss_pred cccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCC--CChhHHhhhhhhhhhHHHHHhhccccc
Q 041566 317 GCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKD--ENLLTRLQNINLSFHFEVEQQVNGVFI 394 (687)
Q Consensus 317 ~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~--~~~~~r~~~~~~~~~~~~~~~~~~~~~ 394 (687)
+ .+++|+++++|+|+.++|++|++++..+.. ++.++|.+.....+.. .....+...... ....... ...
T Consensus 76 ~---~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~ 146 (185)
T cd04179 76 K---AARGDIVVTMDADLQHPPEDIPKLLEKLLE-GGADVVIGSRFVRGGGAGMPLLRRLGSRLF--NFLIRLL---LGV 146 (185)
T ss_pred H---HhcCCEEEEEeCCCCCCHHHHHHHHHHHhc-cCCcEEEEEeecCCCcccchHHHHHHHHHH--HHHHHHH---cCC
Confidence 9 688899999999999999999999999664 5567777775544432 233322221111 1111111 112
Q ss_pred cccccccceEEEehhhhhhh--CCCCCCCccchHHHHHH
Q 041566 395 NFFGFNGTAGVWRIKALEEC--GGWLDRTTVEDMDIAVR 431 (687)
Q Consensus 395 ~~~~~~G~~~~~Rr~aL~~i--GGf~~~~~~ED~~l~~r 431 (687)
......|++.++||++++++ |++ +..+.+|+++++|
T Consensus 147 ~~~~~~~~~~~~~r~~~~~i~~~~~-~~~~~~~~~~~~~ 184 (185)
T cd04179 147 RISDTQSGFRLFRREVLEALLSLLE-SNGFEFGLELLVG 184 (185)
T ss_pred CCcCCCCceeeeHHHHHHHHHhhcc-ccCcceeeEeeec
Confidence 23335788889999999999 444 4456777777665
No 64
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.72 E-value=6.5e-18 Score=160.55 Aligned_cols=169 Identities=20% Similarity=0.244 Sum_probs=114.7
Q ss_pred EEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHH
Q 041566 236 LVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSA 315 (687)
Q Consensus 236 sViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~g 315 (687)
||+||+||+++.+.++|+|+.+|+++. .+|+|+||+++|.+.+++++..+ .+.++.+...+.+. |++.++|.|
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~~--~eiivvdd~s~d~~~~~~~~~~~----~~~~i~~i~~~~n~-g~~~~~n~~ 73 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDPD--FEIIVVDDGSTDETEEILEEYAE----SDPNIRYIRNPENL-GFSAARNRG 73 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGCE--EEEEEEECS-SSSHHHHHHHHHC----CSTTEEEEEHCCCS-HHHHHHHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCCC--EEEEEeccccccccccccccccc----cccccccccccccc-ccccccccc
Confidence 799999999999999999999996554 88999999999999988876543 45666677666555 699999999
Q ss_pred hcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhcccccc
Q 041566 316 MGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFIN 395 (687)
Q Consensus 316 l~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 395 (687)
++ .++++|++++|+|+.++|+++++++..+.+++. +++.+.......+............................
T Consensus 74 ~~---~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (169)
T PF00535_consen 74 IK---HAKGEYILFLDDDDIISPDWLEELVEALEKNPP-DVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWK 149 (169)
T ss_dssp HH---H--SSEEEEEETTEEE-TTHHHHHHHHHHHCTT-EEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTT
T ss_pred cc---ccceeEEEEeCCCceEcHHHHHHHHHHHHhCCC-cEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCC
Confidence 99 789999999999999999999999999997444 34444433333322211111110000000001111122223
Q ss_pred ccccccceEEEehhhhhhhC
Q 041566 396 FFGFNGTAGVWRIKALEECG 415 (687)
Q Consensus 396 ~~~~~G~~~~~Rr~aL~~iG 415 (687)
....+|++.++||++++++|
T Consensus 150 ~~~~~~~~~~~rr~~~~~~~ 169 (169)
T PF00535_consen 150 ISFFIGSCALFRRSVFEEIG 169 (169)
T ss_dssp SSEESSSCEEEEEHHHHHCH
T ss_pred cccccccEEEEEHHHHHhhC
Confidence 34478999999999999975
No 65
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.71 E-value=5.6e-16 Score=162.80 Aligned_cols=204 Identities=17% Similarity=0.261 Sum_probs=137.1
Q ss_pred EEEeecCCch------HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCC--CCC
Q 041566 236 LVQIPMCNER------EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIR--SGY 307 (687)
Q Consensus 236 sViIP~yNE~------~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~--~gg 307 (687)
|||||++++. +.++.++.++..+. ++.++||||+||++++.+.+.+++.++ ..+.. .++..... .=+
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~-~~~~~eiIvvd~~s~~~~~~~l~~~~~---~~~~~-~~i~~~~~~~~f~ 75 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQ-SDPDFEIIVVDDGSSDEFDEELKKLCE---KNGFI-RYIRHEDNGEPFS 75 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcC-CCCCEEEEEEECCCchhHHHHHHHHHh---ccCce-EEEEcCCCCCCcC
Confidence 6999999998 34566677777643 234699999999999988666666554 23332 23322221 226
Q ss_pred hHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHH---HHccCCCeEEEeeeeeeccCCCChhHHhhh-hhhhhhH
Q 041566 308 KAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIP---YFKGNDDLALVQTRWSFVNKDENLLTRLQN-INLSFHF 383 (687)
Q Consensus 308 Ka~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~---~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~-~~~~~~~ 383 (687)
++.|+|.|++ .+++|+|+++|+|++++|+++++++. .+..+++. ++..+..+.+...+. .... .......
T Consensus 76 ~a~arN~g~~---~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~-~~~~p~~yl~~~~~~--~~~~~~~~~~~~ 149 (281)
T PF10111_consen 76 RAKARNIGAK---YARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNA-FLVYPCLYLSEEGSE--KFYSQFKNLWDH 149 (281)
T ss_pred HHHHHHHHHH---HcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCc-eEEEeeeeccchhhH--HHhhcchhcchH
Confidence 9999999999 78999999999999999999999999 66654543 333333343332211 1111 1011111
Q ss_pred HHH-Hhhc--cccccccccccceEEEehhhhhhhCCCCCCCc---cchHHHHHHHHHcCCeEEEEcceEEeec
Q 041566 384 EVE-QQVN--GVFINFFGFNGTAGVWRIKALEECGGWLDRTT---VEDMDIAVRAHLCGWKFVYVNDVKCLCE 450 (687)
Q Consensus 384 ~~~-~~~~--~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~---~ED~~l~~rl~~~G~ri~~~~~a~~~~e 450 (687)
... .... ..........|++++++|+.+.++|||++... .||.|++.|+.+.|.++...++..+++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~~~~~~~~ 222 (281)
T PF10111_consen 150 EFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFKRSPDYLVYHS 222 (281)
T ss_pred HHHHHHhhccccccccccccceEEEEEHHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEecChHHhcccc
Confidence 111 1111 11112223567889999999999999998753 6999999999999999999998887553
No 66
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.70 E-value=2.7e-16 Score=166.72 Aligned_cols=198 Identities=16% Similarity=0.103 Sum_probs=131.0
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHh
Q 041566 231 DYPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAG 310 (687)
Q Consensus 231 ~~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~ 310 (687)
..|+|+|+||+|||++.|.++|+++.+|.++....||+||||+|+|.|.+++++...+.... ..+ ......+.||+.
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~-~~~--~~~~~~n~Gkg~ 105 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSR-EEI--LPELPPRPGKGE 105 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcc-hhh--hhccccCCCHHH
Confidence 56899999999999999999999999886522246899999999999998887532211000 000 111234567999
Q ss_pred HHHHHhcccccCCccEEEEEcCCCC-CCHHHHHHHHHHHccCCCeEEEeeeeeecc--------CCCChhHHhh-hhhhh
Q 041566 311 NLNSAMGCDYVKDYEFVAIFDADFQ-PTPDFLKKTIPYFKGNDDLALVQTRWSFVN--------KDENLLTRLQ-NINLS 380 (687)
Q Consensus 311 aLn~gl~~~~~a~~d~V~~lDaD~~-~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n--------~~~~~~~r~~-~~~~~ 380 (687)
|+|.|++ .+++|+|+++|+|++ ++|+++.+++..+..+|++++|.|.....- ......++.. ..-+.
T Consensus 106 A~~~g~~---~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~~~~~~~~~gr~~~~~~~~l~~ 182 (306)
T PRK13915 106 ALWRSLA---ATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVSGGVDATGGGRVTELVARPLLN 182 (306)
T ss_pred HHHHHHH---hcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccccccCcCCCCchHHHHHHHHHH
Confidence 9999998 689999999999997 899999999999976799999988522110 0011111111 00000
Q ss_pred hhHHHHHhhccccccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHH-cCC-eEEEEc
Q 041566 381 FHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHL-CGW-KFVYVN 443 (687)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~-~G~-ri~~~~ 443 (687)
..+.. ..... . ..+| ..++||++++++. ++. ..+.|.++...+.. .|. ++..++
T Consensus 183 ~~~~~---l~~i~-d--p~sG-~~a~rr~~l~~l~-~~~-~yg~e~~~l~~~~~~~g~~~i~~V~ 238 (306)
T PRK13915 183 LLRPE---LAGFV-Q--PLGG-EYAGRRELLESLP-FVP-GYGVEIGLLIDTLDRLGLDAIAQVD 238 (306)
T ss_pred HHHHh---hhccc-C--cchH-hHHHHHHHHHhCC-CCC-CCeehHHHHHHHHHHhCcCceEEEE
Confidence 00000 00110 1 1234 3679999999984 544 35668888888875 576 666555
No 67
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=99.68 E-value=1.2e-16 Score=164.41 Aligned_cols=231 Identities=16% Similarity=0.191 Sum_probs=186.5
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChH
Q 041566 230 EDYPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKA 309 (687)
Q Consensus 230 ~~~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa 309 (687)
..+|.|||+.|.-.-++++...++|....+||. +|+..+-++++|...++++.+.++|+.-+.+++.--.+..-+.|.
T Consensus 82 ~~LPgVSiikPl~G~d~nl~~Nlesffts~Y~~--~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKI 159 (431)
T KOG2547|consen 82 PKLPGVSIIKPLKGVDPNLYHNLESFFTSQYHK--YELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKI 159 (431)
T ss_pred CCCCCceEEeecccCCchhHHhHHHHHhhccCc--eEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcccccccChhh
Confidence 369999999999999999999999999999995 778877777888888999999999998888887665555556799
Q ss_pred hHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhh
Q 041566 310 GNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQV 389 (687)
Q Consensus 310 ~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~ 389 (687)
+|+--|.+ .+++|+|++.|+|..+.||.+-+++..|..+.+.|.|++...+.+.++--.+--| ..+...+.. ...
T Consensus 160 nN~mpgy~---~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~Gf~atle~-~~fgTsh~r-~yl 234 (431)
T KOG2547|consen 160 NNMMPGYR---AAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQGFDATLEQ-VYFGTSHPR-IYL 234 (431)
T ss_pred hccCHHHH---HhcCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeeccccchhhhhh-eeeccCCce-EEE
Confidence 99999999 7899999999999999999999999999987899999987776665442111111 111111111 112
Q ss_pred ccccccccccccceEEEehhhhhhhCCCCC--CCccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHHHHHHHHHHhhc
Q 041566 390 NGVFINFFGFNGTAGVWRIKALEECGGWLD--RTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYEAYKKQQHRWHS 467 (687)
Q Consensus 390 ~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~--~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~~~~~Qr~RW~~ 467 (687)
.+...++.|.+|-.++.|++++++.||... ..+.||...+..+..+||+..+...+.-.+..-.+...|.+|-.||..
T Consensus 235 ~~n~~~~~c~tgms~~mrK~~ld~~ggi~~f~~yLaedyFaaksllSRG~ksaist~palQnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 235 SGNVLGFNCSTGMSSMMRKEALDECGGISAFGGYLAEDYFAAKSLLSRGWKSAISTHPALQNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred ccccccccccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhHHHHHHHHHHHhhh
Confidence 334445667889999999999999999863 456899999999999999999988877777777888899999999976
No 68
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.67 E-value=4.1e-14 Score=151.58 Aligned_cols=192 Identities=13% Similarity=0.140 Sum_probs=127.4
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHc---CCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCCh
Q 041566 232 YPMVLVQIPMCNEREVYGQSIAAVCI---QDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYK 308 (687)
Q Consensus 232 ~P~VsViIP~yNE~~~l~~tL~Sl~~---q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggK 308 (687)
.+++||+||+|||++.+.++++++.+ +..+ .+||+|+||||+|.|.+++++..+ ..+.+++.... +++.||
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~--~~EIIvVDDgS~D~T~~il~~~~~---~~~~~v~~i~~-~~n~G~ 78 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACESLGK--EYEILLIDDGSSDNSAEMLVEAAQ---APDSHIVAILL-NRNYGQ 78 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHhCCC--CEEEEEEeCCCCCcHHHHHHHHHh---hcCCcEEEEEe-CCCCCH
Confidence 35799999999999999988887753 3322 489999999999999999886543 23455554433 345679
Q ss_pred HhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHh
Q 041566 309 AGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQ 388 (687)
Q Consensus 309 a~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~ 388 (687)
++|++.|++ .+++|+++++|||.+.+|+.+.+++..+.++ .++|.+... +...+++.+..+..+ .......
T Consensus 79 ~~A~~~G~~---~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~--~DvV~~~r~--~~~~~~~r~~~s~~~--~~l~~~~ 149 (325)
T PRK10714 79 HSAIMAGFS---HVTGDLIITLDADLQNPPEEIPRLVAKADEG--YDVVGTVRQ--NRQDSWFRKTASKMI--NRLIQRT 149 (325)
T ss_pred HHHHHHHHH---hCCCCEEEEECCCCCCCHHHHHHHHHHHHhh--CCEEEEEEc--CCCCcHHHHHHHHHH--HHHHHHH
Confidence 999999999 6899999999999999999999999999743 456666532 222344443322111 1111111
Q ss_pred hccccccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHHcCCeEEEEcce
Q 041566 389 VNGVFINFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDV 445 (687)
Q Consensus 389 ~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a 445 (687)
.+....+ ..+..-++||++++++-...+. +..+...+...|+++..+|-.
T Consensus 150 ~g~~~~d---~~~gfr~~~r~~~~~l~~~~~~----~~~~~~l~~~~g~~i~evpv~ 199 (325)
T PRK10714 150 TGKAMGD---YGCMLRAYRRHIVDAMLHCHER----STFIPILANTFARRAIEIPVH 199 (325)
T ss_pred cCCCCCC---CCcCeEEEcHHHHHHHHHCCCC----ccHHHHHHHHcCCCEEEEEeE
Confidence 1111111 1222347999999987433332 223445566779998887754
No 69
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.67 E-value=1.3e-15 Score=148.66 Aligned_cols=177 Identities=13% Similarity=0.107 Sum_probs=121.5
Q ss_pred EEeecCCchHHHHHHHHHHHcCCC-CCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHH
Q 041566 237 VQIPMCNEREVYGQSIAAVCIQDW-PKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSA 315 (687)
Q Consensus 237 ViIP~yNE~~~l~~tL~Sl~~q~y-P~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~g 315 (687)
|+||+|||++.+.++++++.++.. +...+||+|+||+|+|.+.+.+++..++ ..++.+....+ +.|+++|+|.|
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~----~~~i~~i~~~~-n~G~~~a~n~g 75 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAAR----DPRVKVIRLSR-NFGQQAALLAG 75 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhh----CCCEEEEEecC-CCCcHHHHHHH
Confidence 689999999999998888775432 1224889999999999999888765442 33455544443 45699999999
Q ss_pred hcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhcccccc
Q 041566 316 MGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFIN 395 (687)
Q Consensus 316 l~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 395 (687)
++ .+++|+|+++|+|+.++|+++++++..+. ++.++|.|.....+ .+...+.....+. ........ ..
T Consensus 76 ~~---~a~~d~i~~~D~D~~~~~~~l~~l~~~~~--~~~~~v~g~~~~~~--~~~~~~~~~~~~~---~~~~~~~~--~~ 143 (181)
T cd04187 76 LD---HARGDAVITMDADLQDPPELIPEMLAKWE--EGYDVVYGVRKNRK--ESWLKRLTSKLFY---RLINKLSG--VD 143 (181)
T ss_pred HH---hcCCCEEEEEeCCCCCCHHHHHHHHHHHh--CCCcEEEEEecCCc--chHHHHHHHHHHH---HHHHHHcC--CC
Confidence 99 67899999999999999999999999965 34556666644333 3333333221111 11111111 11
Q ss_pred ccccccceEEEehhhhhhhCCCCCCC-ccchHHHHH
Q 041566 396 FFGFNGTAGVWRIKALEECGGWLDRT-TVEDMDIAV 430 (687)
Q Consensus 396 ~~~~~G~~~~~Rr~aL~~iGGf~~~~-~~ED~~l~~ 430 (687)
.....|+..++||++++++|+|++.. ..+|.+.++
T Consensus 144 ~~~~~~~~~~~~r~~~~~i~~~d~~~~~~~~~~~~~ 179 (181)
T cd04187 144 IPDNGGDFRLMDRKVVDALLLLPERHRFLRGLIAWV 179 (181)
T ss_pred CCCCCCCEEEEcHHHHHHHHhcCCCCccHHHHHHHh
Confidence 22246777899999999999998643 356666544
No 70
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.58 E-value=3.6e-14 Score=131.82 Aligned_cols=153 Identities=22% Similarity=0.248 Sum_probs=125.4
Q ss_pred EEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHh
Q 041566 237 VQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAM 316 (687)
Q Consensus 237 ViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl 316 (687)
|+||++|+.+.++.+++|+.+++++. .+|+++||++++.+.+.+++.... ...+.+.. ...++|+++++|.++
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~g~~~~~~~~~ 73 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTYPN--FEVIVVDDGSTDGTLEILEEYAKK----DPRVIRVI-NEENQGLAAARNAGL 73 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCccc--eEEEEEeCCCCccHHHHHHHHHhc----CCCeEEEE-ecCCCChHHHHHHHH
Confidence 68999999999999999999999854 779999999999988877765431 12233333 334567999999999
Q ss_pred cccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccccccc
Q 041566 317 GCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINF 396 (687)
Q Consensus 317 ~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 396 (687)
+ ..++|+++++|+|..++|+++..++..+..+++.+++++.
T Consensus 74 ~---~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~------------------------------------ 114 (156)
T cd00761 74 K---AARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP------------------------------------ 114 (156)
T ss_pred H---HhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc------------------------------------
Confidence 9 5689999999999999999999986666667888888876
Q ss_pred cccccceEEEehhhhhhhCCCCCCCc--cchHHHHHHHHHcCCeEE
Q 041566 397 FGFNGTAGVWRIKALEECGGWLDRTT--VEDMDIAVRAHLCGWKFV 440 (687)
Q Consensus 397 ~~~~G~~~~~Rr~aL~~iGGf~~~~~--~ED~~l~~rl~~~G~ri~ 440 (687)
++++++++.++++|++++... .||.++..++...|++..
T Consensus 115 -----~~~~~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~g~~~~ 155 (156)
T cd00761 115 -----GNLLFRRELLEEIGGFDEALLSGEEDDDFLLRLLRGGKVAF 155 (156)
T ss_pred -----chheeeHHHHHHhCCcchHhcCCcchHHHHHHHHhhccccc
Confidence 558899999999999876554 599999999999887653
No 71
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=99.58 E-value=6.1e-14 Score=131.86 Aligned_cols=203 Identities=16% Similarity=0.141 Sum_probs=136.1
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCC-CCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhH
Q 041566 233 PMVLVQIPMCNEREVYGQSIAAVCIQD-WPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGN 311 (687)
Q Consensus 233 P~VsViIP~yNE~~~l~~tL~Sl~~q~-yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~a 311 (687)
++.||++|+|||.+++.-++.-+...- -...+.||++|||+|.|.|++.++++.+.+.. .++....|.+..| -..|
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~--d~i~l~pR~~klG-LgtA 79 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGE--DNILLKPRTKKLG-LGTA 79 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCC--CcEEEEeccCccc-chHH
Confidence 568999999999977764444333311 11346899999999999999999988776644 4555556665444 7788
Q ss_pred HHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCC-h--hHHhhhhhhhhhHHHHHh
Q 041566 312 LNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDEN-L--LTRLQNINLSFHFEVEQQ 388 (687)
Q Consensus 312 Ln~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~-~--~~r~~~~~~~~~~~~~~~ 388 (687)
.-.|++ .++++|++++|||...+|.++.++++...+ .+.++|.|....-+..-. | -.+..+ .... ...+.
T Consensus 80 y~hgl~---~a~g~fiviMDaDlsHhPk~ipe~i~lq~~-~~~div~GTRYa~~ggV~gW~mkRk~IS--~gAn-~la~~ 152 (238)
T KOG2978|consen 80 YIHGLK---HATGDFIVIMDADLSHHPKFIPEFIRLQKE-GNYDIVLGTRYAGGGGVYGWDMKRKIIS--RGAN-FLARI 152 (238)
T ss_pred HHhhhh---hccCCeEEEEeCccCCCchhHHHHHHHhhc-cCcceeeeeeEcCCCceecchhhHHHHh--hhhH-HHHHH
Confidence 889998 789999999999999999999999988774 677888886443332211 1 111111 0000 11111
Q ss_pred hccccccccccccceEEEehhhhhhhC-CCCCCCccchHHHHHHHHHcCCeEEEEcceEE
Q 041566 389 VNGVFINFFGFNGTAGVWRIKALEECG-GWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKC 447 (687)
Q Consensus 389 ~~~~~~~~~~~~G~~~~~Rr~aL~~iG-Gf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~ 447 (687)
.-. .++..++|+.-++|+++++..- .-......--+++..|+.++||.+.-+|-+.+
T Consensus 153 ll~--~~~sdltGsFrLykk~vl~~li~e~vSkGyvfqmEll~ra~~~~y~IgEvPitFv 210 (238)
T KOG2978|consen 153 LLN--PGVSDLTGSFRLYKKEVLEKLIEESVSKGYVFQMELLARARQHGYTIGEVPITFV 210 (238)
T ss_pred hcc--CCCccCcceeeeehHHHHHhhHHHhhccchhhhHHHHHhccccCceEeecceEEE
Confidence 111 1333479999999999998641 00011123468888999999999888886653
No 72
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.42 E-value=2.1e-12 Score=131.47 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=89.6
Q ss_pred eEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHH
Q 041566 234 MVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLN 313 (687)
Q Consensus 234 ~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn 313 (687)
+|||+||+|||++.+++||+|+..|. -||+|+||+|+|.|.++++ ..+++++.. ..+|.+.+.|
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~~-----~eiivvD~gStD~t~~i~~-------~~~~~v~~~----~~~g~~~~~n 64 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWAV-----DEIIVVDSGSTDRTVEIAK-------EYGAKVYQR----WWDGFGAQRN 64 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhccc-----CEEEEEeCCCCccHHHHHH-------HcCCEEEEC----CCCChHHHHH
Confidence 48999999999999999999998773 2699999999999998876 356666533 4556999999
Q ss_pred HHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEe
Q 041566 314 SAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQ 358 (687)
Q Consensus 314 ~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vq 358 (687)
.|++ .+++|+|+++|+|..++|+.++++...+.++|..+...
T Consensus 65 ~~~~---~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~~~~~~ 106 (229)
T cd02511 65 FALE---LATNDWVLSLDADERLTPELADEILALLATDDYDGYYV 106 (229)
T ss_pred HHHH---hCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCCcEEEE
Confidence 9999 68999999999999999999999999998766644333
No 73
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=1.2e-11 Score=119.99 Aligned_cols=106 Identities=22% Similarity=0.211 Sum_probs=87.4
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhH
Q 041566 232 YPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGN 311 (687)
Q Consensus 232 ~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~a 311 (687)
.|++||+||+||+++.+.++|+|+++|+++. .||+|+||||+|+|.+++++...+. .++... ....++|++.+
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~~--~eiivvddgs~d~t~~~~~~~~~~~----~~~~~~-~~~~~~g~~~~ 74 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYKD--FEIIVVDDGSTDGTTEIAIEYGAKD----VRVIRL-INERNGGLGAA 74 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhcc--eEEEEEeCCCCCChHHHHHHHhhhc----ceEEEe-ecccCCChHHH
Confidence 5789999999999999999999999999987 7799999999999999988765422 223322 33456679999
Q ss_pred HHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHH
Q 041566 312 LNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYF 348 (687)
Q Consensus 312 Ln~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f 348 (687)
+|.++. .+.+|+++++|+|.. +++.+..+....
T Consensus 75 ~~~~~~---~~~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 75 RNAGLE---YARGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred HHhhHH---hccCCEEEEEccCCC-CCHHHHHHHHHh
Confidence 999999 677899999999999 888887744444
No 74
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=99.07 E-value=1.3e-08 Score=102.56 Aligned_cols=209 Identities=16% Similarity=0.087 Sum_probs=127.2
Q ss_pred eEEEEeecCCchH----HHHHHHHHHHc--CCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCC
Q 041566 234 MVLVQIPMCNERE----VYGQSIAAVCI--QDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGY 307 (687)
Q Consensus 234 ~VsViIP~yNE~~----~l~~tL~Sl~~--q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~gg 307 (687)
-++||||+|||+. .+..|++.+.+ ..-|+.+.||+||||||.|.|.+++-+.+.++....+++. ....+.|
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~---~l~~nrg 144 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVI---KLKKNRG 144 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEe---ehhccCC
Confidence 6899999999994 45566665543 2224468999999999999999999888876655555544 2334556
Q ss_pred hHhHHHHHhcccccCCccEEEEEcCCC--CC-CHHHHHHHHHHHcc-CCCeEEEeeeee-eccCCCChhHHhh--h-hhh
Q 041566 308 KAGNLNSAMGCDYVKDYEFVAIFDADF--QP-TPDFLKKTIPYFKG-NDDLALVQTRWS-FVNKDENLLTRLQ--N-INL 379 (687)
Q Consensus 308 Ka~aLn~gl~~~~~a~~d~V~~lDaD~--~~-~pd~L~~lv~~f~~-~p~vg~Vqg~~~-~~n~~~~~~~r~~--~-~~~ 379 (687)
|+||...|+. .+.|+++++.|||- .+ |-+.|++.+..... .|+-++++|... ..|. +....|-. + .-+
T Consensus 145 KGgAvR~g~l---~~rG~~ilfadAdGaTkf~d~ekLe~al~~~~~p~~r~~va~GsrahLe~~-~a~a~rs~~r~iLM~ 220 (323)
T KOG2977|consen 145 KGGAVRKGML---SSRGQKILFADADGATKFADLEKLEKALNDKAGPGPRDDVACGSRAHLENT-EAVAKRSVIRNILMY 220 (323)
T ss_pred CCcceehhhH---hccCceEEEEcCCCCccCCCHHHHHHHHHhhcCCCCCCceeecCHHHhhcc-HHHHHHhHhhHHHHH
Confidence 9999999998 68999999999995 44 66888888887663 333344444332 3332 22222211 1 112
Q ss_pred hhhHHHHHhhccccccccccccceEEEehhhhhhhCCCCC-CCccchHHHHHHHHHcCCeEEEEcceEEeeccCcC
Q 041566 380 SFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECGGWLD-RTTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPES 454 (687)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~-~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t 454 (687)
.+|..+.-......... -+| +-++.|.+.+.+-.|.. ..-.-|.++-+.+...+-.+.-++ .-++|.+.|
T Consensus 221 gFH~lv~~~a~rsI~DT--Qcg-fklftR~aa~~if~~lh~e~W~fdvEll~La~~~~ipi~ei~--v~w~EIdgS 291 (323)
T KOG2977|consen 221 GFHKLVWIFAIRSIRDT--QCG-FKLFTRAAARRIFPWLHVERWAFDVELLYLAKRFTIPIKEIP--VEWTEIDGS 291 (323)
T ss_pred HHHHHHHHHhcCccccc--chh-HHHhHHHHHHhhcchhheeeeeccHHHHHHHHHcCCCcEEee--eEEEEcCCc
Confidence 33333222111111111 122 24567777777643322 122468888777777776665544 346666655
No 75
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.6e-09 Score=121.22 Aligned_cols=212 Identities=14% Similarity=0.146 Sum_probs=149.1
Q ss_pred CCCCCCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhH-HHHHHHHHHHHhhcCcEEEEEeccCCC
Q 041566 228 DLEDYPMVLVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDV-QLLIKAEVLKWQQRGVHIIYRHRLIRS 305 (687)
Q Consensus 228 ~~~~~P~VsViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t-~~~l~~~~~~~~~~~v~i~~~~r~~~~ 305 (687)
+.+.+|++||||+-+||. .++-++|.|+.+.+-+.--.||++|||+|+.+- .+.+++.++++.. +.+++.++|.
T Consensus 137 ~~~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~~----v~i~r~~~R~ 212 (578)
T KOG3736|consen 137 YSDKLPTTSVIIIFHNEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFSK----VRILRTKKRE 212 (578)
T ss_pred cccccCCCceEEEEecCCCcchhheEEeehccCChhHeEEEEEeecCcchhhhhhhhHHHHhhhcc----eeEEeecchh
Confidence 456699999999999999 888999999998874443458999999997655 4455555554322 4444445555
Q ss_pred CChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHH-----hhhhhhh
Q 041566 306 GYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTR-----LQNINLS 380 (687)
Q Consensus 306 ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r-----~~~~~~~ 380 (687)
| +..|...|-+ .+++|+++|+||.+....+||+-++..+..|.. .+|++.+...+.+.-.+.. .-.++..
T Consensus 213 G-LIrARl~GA~---~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~-tvv~PvID~Id~~tf~y~~~~~~~rGgFdW~ 287 (578)
T KOG3736|consen 213 G-LIRARLLGAS---MATGEVLTFLDSHCEVNVGWLEPLLARIAEDRK-TVVCPVIDVIDDNTFEYEKQSELMRGGFDWE 287 (578)
T ss_pred h-hHHHHhhhhh---hhhchheeeeecceeEecCcchHHHHHhhhcCc-eeecceEEeecCcCceecccCccceeeeecc
Confidence 5 8888888888 799999999999999999999999999997543 4666655544432211111 0011111
Q ss_pred hhHH-------HHHhhc---cccccccccccceEEEehhhhhhhCCCCCCCc---cchHHHHHHHHHcCCeEEEEcceEE
Q 041566 381 FHFE-------VEQQVN---GVFINFFGFNGTAGVWRIKALEECGGWLDRTT---VEDMDIAVRAHLCGWKFVYVNDVKC 447 (687)
Q Consensus 381 ~~~~-------~~~~~~---~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~---~ED~~l~~rl~~~G~ri~~~~~a~~ 447 (687)
++|. ...... ... ....+.|...+++|+-|.++|+|++++- +|..++++|+-+-|-++..+|-..+
T Consensus 288 l~f~w~~lP~~~~~~~~~~t~Pi-rsPtMaGglFAI~r~yF~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~PCSrV 366 (578)
T KOG3736|consen 288 LTFKWERLPLPEEKRRELPTDPI-RSPTMAGGLFAIDRKYFGELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVPCSRV 366 (578)
T ss_pred eeEEeccCCccHhhcccCCCCCc-CCcccCCceEEeeHHHHhhccCccccccccChhhceeeEEEeccCCeEEecCccce
Confidence 1111 011111 111 1223689999999999999999997654 5999999999999999999987764
Q ss_pred ee
Q 041566 448 LC 449 (687)
Q Consensus 448 ~~ 449 (687)
-+
T Consensus 367 GH 368 (578)
T KOG3736|consen 367 GH 368 (578)
T ss_pred ee
Confidence 43
No 76
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=9.7e-09 Score=107.07 Aligned_cols=227 Identities=17% Similarity=0.143 Sum_probs=149.2
Q ss_pred CCCCCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCC
Q 041566 229 LEDYPMVLVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGY 307 (687)
Q Consensus 229 ~~~~P~VsViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~gg 307 (687)
..++|..||||+-+||+ ..+-+|+.|+++++=++---|||+|||.|.|... .+.+ .++ .++...+...|.|
T Consensus 120 ~~dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dped--~~~L-~ri----~kvr~LRN~~ReG- 191 (559)
T KOG3738|consen 120 KVDLPPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPED--GKLL-KRI----PKVRVLRNNEREG- 191 (559)
T ss_pred ecCCCCceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChHH--HHHH-hhh----heeeeecccchhh-
Confidence 45689999999999998 8899999999998833334489999999986432 2221 122 2344443333333
Q ss_pred hHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCC-ChhHHhh----hhhhhhh
Q 041566 308 KAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDE-NLLTRLQ----NINLSFH 382 (687)
Q Consensus 308 Ka~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~-~~~~r~~----~~~~~~~ 382 (687)
-....+.|.. .+++.++.|+|+.|.+..+||+-++.....|+. .+|++-....|.+. +...... .+.+..+
T Consensus 192 LirSRvrGAd---vA~a~vltFLDSHcEvN~~WLePLL~Rvaed~t-rvVsPiiDvIn~dnf~Y~~asadLrGGFDWsLh 267 (559)
T KOG3738|consen 192 LIRSRVRGAD---VAQATVLTFLDSHCEVNEGWLEPLLERVAEDTT-RVVSPIIDVINLDNFSYVGASADLRGGFDWSLH 267 (559)
T ss_pred hhhhhccccc---cccceEEEEEecceeecchhhHHHHHHHhhccc-ceeecccccccccccccccchhhhcCCcceEEE
Confidence 5555555555 789999999999999999999999999997655 46776666666653 1111111 1222222
Q ss_pred HHH-----HHhhcc--cc--ccccccccceEEEehhhhhhhCCCCCCCc---cchHHHHHHHHHcCCeEEEEcceEEee-
Q 041566 383 FEV-----EQQVNG--VF--INFFGFNGTAGVWRIKALEECGGWLDRTT---VEDMDIAVRAHLCGWKFVYVNDVKCLC- 449 (687)
Q Consensus 383 ~~~-----~~~~~~--~~--~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~---~ED~~l~~rl~~~G~ri~~~~~a~~~~- 449 (687)
|.- ++.... .. .....+.|...++.++-|.+.|.|+.+.- +|..++++|+...|-.+..+|-.++-+
T Consensus 268 F~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCSRVGHV 347 (559)
T KOG3738|consen 268 FKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLEIVPCSRVGHV 347 (559)
T ss_pred EEehhcCHHHHhhccCCCCcccCccccceeEEecHHHHHHhcccCccccccCCcceEEEEEEEeeCCeeEEEeccchhhh
Confidence 222 222111 00 01122678889999999999999986543 699999999999998888888655321
Q ss_pred ---ccC-----cCHHHHHHHHHHhhc
Q 041566 450 ---ELP-----ESYEAYKKQQHRWHS 467 (687)
Q Consensus 450 ---e~P-----~t~~~~~~Qr~RW~~ 467 (687)
..| .+-..|++.-+|=+.
T Consensus 348 FRkrHpy~FP~gs~~ty~~NTkr~AE 373 (559)
T KOG3738|consen 348 FRKRHPYTFPGGSGNTYIKNTKRAAE 373 (559)
T ss_pred hhccCCCcCCCCCCcchhhcchHHHH
Confidence 222 333466666666433
No 77
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=98.79 E-value=4.8e-08 Score=103.87 Aligned_cols=176 Identities=18% Similarity=0.223 Sum_probs=114.9
Q ss_pred EEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEec-c-CCCC------
Q 041566 235 VLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHR-L-IRSG------ 306 (687)
Q Consensus 235 VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r-~-~~~g------ 306 (687)
+.|+|++||.++.++++|+|+++|....+..+|+|.+||+++++.+.++... ..++++.... . .+.|
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~-----~~i~~i~~~~~~~~~~~~~~~~~ 76 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFG-----DGVTHIQHPPISIKNVNPPHKFQ 76 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhc-----cccEEEEcccccccccCcccccc
Confidence 4689999999999999999999985233357799999999888777665421 2333221110 0 1111
Q ss_pred ---ChHh----HHHHHhcccccCCccEEEEEcCCCCCCHH---HHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhh
Q 041566 307 ---YKAG----NLNSAMGCDYVKDYEFVAIFDADFQPTPD---FLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQN 376 (687)
Q Consensus 307 ---gKa~----aLn~gl~~~~~a~~d~V~~lDaD~~~~pd---~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~ 376 (687)
+-+. |+|.++. ..++++++++|+|+.+.|| +++++++.+++|+.+.+|++-.. |........
T Consensus 77 ~y~~ia~hyk~aln~vF~---~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~Nd--nG~~~~~~~--- 148 (334)
T cd02514 77 GYYRIARHYKWALTQTFN---LFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWND--NGKEHFVDD--- 148 (334)
T ss_pred hhhHHHHHHHHHHHHHHH---hcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeecc--CCcccccCC---
Confidence 1122 7888887 4579999999999999999 55888889999999999998531 111010000
Q ss_pred hhhhhhHHHHHhhccccccccccccceEEEehhhhhhhC-CCCCCCccchHHHHHHH--HHcCCeE
Q 041566 377 INLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECG-GWLDRTTVEDMDIAVRA--HLCGWKF 439 (687)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iG-Gf~~~~~~ED~~l~~rl--~~~G~ri 439 (687)
. ..... ..-.++|.+-+.+|++.++.. .|+. -|+|.++|. .++|-.+
T Consensus 149 -------~----~~~ly-rs~ff~glGWml~r~~W~e~~~~wp~----~~WD~w~R~~~~rkgr~c 198 (334)
T cd02514 149 -------T----PSLLY-RTDFFPGLGWMLTRKLWKELEPKWPK----AFWDDWMRLPEQRKGREC 198 (334)
T ss_pred -------C----cceEE-EecCCCchHHHHHHHHHHHhCCCCCC----CChHHhhcchhhhcCCcc
Confidence 0 00111 111257777788888888763 3433 499999985 5556443
No 78
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.1e-08 Score=102.99 Aligned_cols=209 Identities=14% Similarity=0.154 Sum_probs=137.6
Q ss_pred CCCCCCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCCh-hHHHHHHHHHHHHhhcCcEEEEEeccCCC
Q 041566 228 DLEDYPMVLVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDDL-DVQLLIKAEVLKWQQRGVHIIYRHRLIRS 305 (687)
Q Consensus 228 ~~~~~P~VsViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d-~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ 305 (687)
.++++|++||+|.-.||. ..+.+|+.|++.-+=+.---+|++|||-||. ..++.+++.+..+ .|. +...+.+.|.
T Consensus 150 Ype~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~f--nGl-VkV~Rne~RE 226 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLF--NGL-VKVFRNERRE 226 (603)
T ss_pred CcccCCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHh--cCE-EEEEecchhh
Confidence 467899999999999999 9999999999987633323378888887764 4556666666554 232 2222333333
Q ss_pred CChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEE------Eeeeee-e---ccCCCChhHHhh
Q 041566 306 GYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLAL------VQTRWS-F---VNKDENLLTRLQ 375 (687)
Q Consensus 306 ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~------Vqg~~~-~---~n~~~~~~~r~~ 375 (687)
| -..|...|.+ .+.|++++++||.|.+.-+|+.-+++.+..|..+.- +-+... + +..+..-...+.
T Consensus 227 G-LI~aRSiGA~---~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGif 302 (603)
T KOG3737|consen 227 G-LIQARSIGAQ---KATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIF 302 (603)
T ss_pred h-hhhhhccchh---hccccEEEEEecceeeecccccccccccccCceEEEEeeeeeecCCceEEeeccCCcchhhcchh
Confidence 3 5555555655 579999999999999999999999999987654322 222111 1 111111111111
Q ss_pred hhhhhhhH------HHHHhh---c-cccccccccccceEEEehhhhhhhCCCCCCCc---cchHHHHHHHHHcCCeEEEE
Q 041566 376 NINLSFHF------EVEQQV---N-GVFINFFGFNGTAGVWRIKALEECGGWLDRTT---VEDMDIAVRAHLCGWKFVYV 442 (687)
Q Consensus 376 ~~~~~~~~------~~~~~~---~-~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~---~ED~~l~~rl~~~G~ri~~~ 442 (687)
++.+.+ ..++.. + ..+.+. ...|..+++.|+.+.+.|.+++... +|.+++++.+.+.|-++.++
T Consensus 303 --eWgmLyKe~~~t~rE~r~RkhnsePyRSP-thAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fV 379 (603)
T KOG3737|consen 303 --EWGMLYKEVPLTPREKRLRKHNSEPYRSP-THAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQCGGKILFV 379 (603)
T ss_pred --hhhheeccCCCCHHHHHhhhccCCCCCCc-ccccceeeehHHHHHHhccCCCcceeecCcceeEEEEEEeeCCEEEEE
Confidence 111000 111111 1 112222 2568889999999999999988654 69999999999999999999
Q ss_pred cceE
Q 041566 443 NDVK 446 (687)
Q Consensus 443 ~~a~ 446 (687)
|-..
T Consensus 380 PCSr 383 (603)
T KOG3737|consen 380 PCSR 383 (603)
T ss_pred Eccc
Confidence 9665
No 79
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=98.65 E-value=4.3e-07 Score=91.71 Aligned_cols=181 Identities=12% Similarity=0.143 Sum_probs=97.6
Q ss_pred EEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHH
Q 041566 235 VLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNS 314 (687)
Q Consensus 235 VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~ 314 (687)
|+| |.|+|.++.++++++++.++..|+. +.+-+|+ +.+ ..+-+.+.|.
T Consensus 1 isi-I~c~n~~~~~~~~~~~i~~~~~~~~--~~i~i~~----------------------------~~~-~~s~~~~yN~ 48 (217)
T PF13712_consen 1 ISI-IICVNDEELYEECLRSIKRLIGPPG--ELIEIDN----------------------------VRN-AKSMAAAYNE 48 (217)
T ss_dssp EEE-EEEES-HHHHHHHHHHHHHTT--TE--EEEEEE-----------------------------SSS--S-TTTHHHH
T ss_pred CEE-EEEECCHHHHHHHHHHHHhhCCCCc--eEEEEec----------------------------cCC-CcCHHHHHHH
Confidence 344 5566777788889999999988873 3333332 111 2347788999
Q ss_pred HhcccccCCccEEEEEcCCCCC-CHHHHHHHHHHHccCCCeEEEe--eeeeeccCCCChhHHhh----hhhhh---hhHH
Q 041566 315 AMGCDYVKDYEFVAIFDADFQP-TPDFLKKTIPYFKGNDDLALVQ--TRWSFVNKDENLLTRLQ----NINLS---FHFE 384 (687)
Q Consensus 315 gl~~~~~a~~d~V~~lDaD~~~-~pd~L~~lv~~f~~~p~vg~Vq--g~~~~~n~~~~~~~r~~----~~~~~---~~~~ 384 (687)
|++ .++++|++++..|+.+ +++++.+++..|+.+|++|+++ |... ...+..++.... ...+. ....
T Consensus 49 a~~---~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~~-~~~~~~~w~~~~~~g~~~~~~~~~~~~~ 124 (217)
T PF13712_consen 49 AME---KAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSKR-LPPNGVWWESPNKVGKVREYGRIMHGHG 124 (217)
T ss_dssp HGG---G--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEES-S-S-TTS---EEEEEETTEEEE----E-
T ss_pred HHH---hCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCCc-CCCCCccccccccccccccccccccccc
Confidence 999 7899999999999966 7999999999997689987664 3322 222222222110 00000 0000
Q ss_pred H---HH-hh----ccccccccccccceEEEehhhhhhhCCCCCCCc----cchHHHHHHHHHcCCeEEEEcceEEeeccC
Q 041566 385 V---EQ-QV----NGVFINFFGFNGTAGVWRIKALEECGGWLDRTT----VEDMDIAVRAHLCGWKFVYVNDVKCLCELP 452 (687)
Q Consensus 385 ~---~~-~~----~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~----~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P 452 (687)
. .+ .. ......+-.+-|..++.+++++ +|+++.. .-|.++++++.++|+++ +++++.+.+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~V~avDg~ll~~~~dv~----~fde~~~~gfH~Ydvd~cl~~~~~G~~v-~~~~~~~~H~s~ 199 (217)
T PF13712_consen 125 PNSAGEVRYGGPRNDPPEEVQAVDGLLLATQKDVP----RFDEDLFTGFHFYDVDQCLEARRAGYRV-VVPPPWCIHFSG 199 (217)
T ss_dssp ------------ES-SSEEEEEE-TTEEEEETTB---------SS--SSSSHHHHHHHHHHHTT-EE-EE-----EE-S-
T ss_pred ccccccccccccccCCceeEEEecceEEEEEcccC----CCCccccCCcchHHHHHHHHHHHhCCEE-EecCceEEEcCC
Confidence 0 00 00 1123344557899999999999 6777633 47999999999999998 667777888776
Q ss_pred cCHH
Q 041566 453 ESYE 456 (687)
Q Consensus 453 ~t~~ 456 (687)
.++.
T Consensus 200 g~~~ 203 (217)
T PF13712_consen 200 GSFD 203 (217)
T ss_dssp ---S
T ss_pred CCcc
Confidence 6543
No 80
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=97.86 E-value=0.00012 Score=73.20 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=95.9
Q ss_pred eEEEEeecCCchHHHHHHHHHHH----cCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChH
Q 041566 234 MVLVQIPMCNEREVYGQSIAAVC----IQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKA 309 (687)
Q Consensus 234 ~VsViIP~yNE~~~l~~tL~Sl~----~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa 309 (687)
+|+|+||-+|.++.+...+..+. +|. -++.|+|++...+. .=.|+
T Consensus 3 ~~aiivpyr~R~~~l~~~l~~~~~~L~rq~---~~~~i~vi~Q~~~~----------------------------~FNR~ 51 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQQ---LDYRIFVIEQVGNF----------------------------RFNRA 51 (219)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHhcC---CcEEEEEEEecCCc----------------------------cchhh
Confidence 68999999999877666655543 232 23456666532111 11266
Q ss_pred hHHHHHhcccc-cCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHh
Q 041566 310 GNLNSAMGCDY-VKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQ 388 (687)
Q Consensus 310 ~aLn~gl~~~~-~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~ 388 (687)
..+|.|+..+. ..++|++++-|.|..|..+.... .+...|....+.-. ...+.+.+
T Consensus 52 ~llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~y---~~~~~p~H~s~~~~---------------~~~~~lpy----- 108 (219)
T cd00899 52 KLLNVGFLEALKDGDWDCFIFHDVDLLPENDRNLY---GCEEGPRHLSVPLD---------------KFHYKLPY----- 108 (219)
T ss_pred hhhhHHHHHHhhcCCccEEEEecccccccCccccc---cCCCCCeEEEEeec---------------ccccccCc-----
Confidence 66777665331 23579999999999998876542 12323322111110 00011111
Q ss_pred hccccccccccccceEEEehhhhhhhCCCCCCCc---cchHHHHHHHHHcCCeEEEEcceE
Q 041566 389 VNGVFINFFGFNGTAGVWRIKALEECGGWLDRTT---VEDMDIAVRAHLCGWKFVYVNDVK 446 (687)
Q Consensus 389 ~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~---~ED~~l~~rl~~~G~ri~~~~~a~ 446 (687)
-++.|+.++++++.+.+++||++... +||-|+..|+...|.++...+...
T Consensus 109 --------~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~~~~ 161 (219)
T cd00899 109 --------KTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGDT 161 (219)
T ss_pred --------ccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEeccCcc
Confidence 12467889999999999999998655 599999999999999988776543
No 81
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=97.51 E-value=0.00084 Score=73.53 Aligned_cols=185 Identities=19% Similarity=0.264 Sum_probs=95.2
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccC------
Q 041566 230 EDYPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLI------ 303 (687)
Q Consensus 230 ~~~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~------ 303 (687)
...|.+-|+|-+||.++.+++||+++++..-..+++.|+|..||+++.+.+.++.. .+ .+. ++....
T Consensus 90 ~~~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~y----~~-~v~--~i~~~~~~~i~~ 162 (434)
T PF03071_consen 90 NKEPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKSY----GD-QVT--YIQHPDFSPITI 162 (434)
T ss_dssp -------EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHGG----GG-GSE--EEE-S--S----
T ss_pred cCCCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHHh----hh-hhe--eeecCCcCCcee
Confidence 34667889999999999999999999986522346779999999999888776642 11 122 221110
Q ss_pred CCCC-h-------Hh----HHHHHhcccccCCccEEEEEcCCCCCCHHHHH---HHHHHHccCCCeEEEeeeeeeccCCC
Q 041566 304 RSGY-K-------AG----NLNSAMGCDYVKDYEFVAIFDADFQPTPDFLK---KTIPYFKGNDDLALVQTRWSFVNKDE 368 (687)
Q Consensus 304 ~~gg-K-------a~----aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~---~lv~~f~~~p~vg~Vqg~~~~~n~~~ 368 (687)
..+. | +. ||+..+. .-+++.|+++..|..+.||+++ .+.+.++.||.+-+|++-- .|...
T Consensus 163 ~~~~~~~~~y~~IA~HYk~aL~~vF~---~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawN--dnG~~ 237 (434)
T PF03071_consen 163 PPKEKKFKGYYKIARHYKWALSQVFN---KFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWN--DNGKE 237 (434)
T ss_dssp -TT-GGGHHHHHHHHHHHHHHHHHHH---TS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES----TT-BG
T ss_pred CcccccccchHHHHHHHHHHHHHHHH---hcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccc--cCCcc
Confidence 0110 1 11 2344443 3468899999999999998864 5666777889998888731 12111
Q ss_pred ChhHHhhhhhhhhhHHHHHhhccccccccccccceEEEehhhhhhhC-CCCCCCccchHHHHHH--HHHcCCeEEEEcce
Q 041566 369 NLLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECG-GWLDRTTVEDMDIAVR--AHLCGWKFVYVNDV 445 (687)
Q Consensus 369 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iG-Gf~~~~~~ED~~l~~r--l~~~G~ri~~~~~a 445 (687)
...... .. ......-.++|-+-+.+|+..+++. .|+.. . +|-++| ..++|-.++. |++
T Consensus 238 ~~~~~~---------~~-----~~lyRsdffpglGWml~r~~w~el~~~Wp~~-~---WDdwmR~~~~rkgR~cIr-Pei 298 (434)
T PF03071_consen 238 HFVDDS---------RP-----SLLYRSDFFPGLGWMLTRELWDELEPKWPKA-F---WDDWMRQPEQRKGRQCIR-PEI 298 (434)
T ss_dssp GGS-TT----------T-----T-EEEESS---SSEEEEHHHHHHHGGG--SS-----HHHHHTSHHHHTT-EEEE-ESS
T ss_pred ccccCC---------Cc-----cceEecccCCchHHHhhHHHHHhhcccCCCC-C---chhhhcCccccCCCceee-ccC
Confidence 110000 00 0111111268888999999999875 46542 2 444444 6677866665 443
No 82
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=97.41 E-value=0.0021 Score=66.16 Aligned_cols=119 Identities=17% Similarity=0.172 Sum_probs=81.9
Q ss_pred CCCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCC--hhHHHHHHHHHHHHhh-----cC-cEEEEEe
Q 041566 229 LEDYPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDD--LDVQLLIKAEVLKWQQ-----RG-VHIIYRH 300 (687)
Q Consensus 229 ~~~~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~--d~t~~~l~~~~~~~~~-----~~-v~i~~~~ 300 (687)
...-++|.|+.|+.|-+..+..-.+.+.+++||.+.+.+-.+.+.++ |.+.+.+++..++.+. .. -.+....
T Consensus 21 ~~~~e~VLILtplrna~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~ 100 (269)
T PF03452_consen 21 ARNKESVLILTPLRNAASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILR 100 (269)
T ss_pred cccCCeEEEEEecCCchHHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEc
Confidence 45578999999999999999999999999999999988855555555 7787888776655432 11 1222221
Q ss_pred cc----------CCCC---------ChHhHHHHHhcccccCCccEEEEEcCCCCC-CHHHHHHHHHH
Q 041566 301 RL----------IRSG---------YKAGNLNSAMGCDYVKDYEFVAIFDADFQP-TPDFLKKTIPY 347 (687)
Q Consensus 301 r~----------~~~g---------gKa~aLn~gl~~~~~a~~d~V~~lDaD~~~-~pd~L~~lv~~ 347 (687)
.+ +|+. --|.+.|..+-.+.....++|+.+|+|.+- +|+.+++++.+
T Consensus 101 ~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~ 167 (269)
T PF03452_consen 101 KDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAH 167 (269)
T ss_pred CCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHhC
Confidence 11 1211 123345666655545588999999999855 77888877653
No 83
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=97.28 E-value=0.0014 Score=57.09 Aligned_cols=83 Identities=22% Similarity=0.161 Sum_probs=57.0
Q ss_pred CCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCC-ChHhHHHHHhcccc
Q 041566 242 CNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSG-YKAGNLNSAMGCDY 320 (687)
Q Consensus 242 yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~g-gKa~aLn~gl~~~~ 320 (687)
+||+..|.+.|....++... + ++|+||+|+|+|.+++++. .++.++....+.+.. .+...++...+.
T Consensus 1 rne~~~L~~wl~~~~~lG~d--~--i~i~d~~s~D~t~~~l~~~------~~v~i~~~~~~~~~~~~~~~~~~~~~~~-- 68 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLALGVD--H--IYIYDDGSTDGTREILRAL------PGVGIIRWVDPYRDERRQRAWRNALIER-- 68 (97)
T ss_pred CChHHHHHHHHHHHHHcCCC--E--EEEEECCCCccHHHHHHhC------CCcEEEEeCCCccchHHHHHHHHHHHHh--
Confidence 58999999999999887643 3 7889999999999988752 446655443322222 122333443332
Q ss_pred cCCccEEEEEcCCCCC
Q 041566 321 VKDYEFVAIFDADFQP 336 (687)
Q Consensus 321 ~a~~d~V~~lDaD~~~ 336 (687)
..+.++++++|+|-.+
T Consensus 69 ~~~~dWvl~~D~DEfl 84 (97)
T PF13704_consen 69 AFDADWVLFLDADEFL 84 (97)
T ss_pred CCCCCEEEEEeeeEEE
Confidence 3578999999999754
No 84
>KOG3588 consensus Chondroitin synthase 1 [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.0091 Score=62.79 Aligned_cols=203 Identities=14% Similarity=0.189 Sum_probs=116.4
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCC-ChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCCh
Q 041566 230 EDYPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSD-DLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYK 308 (687)
Q Consensus 230 ~~~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s-~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggK 308 (687)
-+.|.+.+++|...+.....+...++|... +++++++|+-=++ .++-.. ++....+....+++.... .+..-..
T Consensus 226 i~~pgih~i~pl~gr~~~f~rf~q~~c~~~--d~~l~l~vv~f~~se~e~ak--~e~~tslra~f~~~q~l~-lngeFSR 300 (494)
T KOG3588|consen 226 IEDPGIHMIMPLRGRAAIFARFAQSICARG--DDRLALSVVYFGYSEDEMAK--RETITSLRASFIPVQFLG-LNGEFSR 300 (494)
T ss_pred ccCCCceEEEeccchHHHhhhhhHHHhccC--CCceEEEEEEecCCChHHHh--hhHHHHHhhcCCceEEec-ccchhhh
Confidence 456789999999999999999999998764 5566666555444 332211 122222323334443332 1121235
Q ss_pred HhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCC-ChhHHhhhhhh-hhhHHHH
Q 041566 309 AGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDE-NLLTRLQNINL-SFHFEVE 386 (687)
Q Consensus 309 a~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~-~~~~r~~~~~~-~~~~~~~ 386 (687)
+-||..|-+. ....-.+.|+|-|.....++|.++-.--.-+.+ |..+..|.--+. .+.. +.-.. ..++...
T Consensus 301 a~aL~vGAe~--~~~nvLLFfcDVDi~FT~efL~rcr~Nt~~gkq---iyfPivFS~ynp~ivy~--~~~~~p~e~~~~~ 373 (494)
T KOG3588|consen 301 AKALMVGAET--LNANVLLFFCDVDIYFTTEFLNRCRLNTILGKQ---IYFPIVFSQYNPEIVYE--QDKPLPAEQQLVI 373 (494)
T ss_pred hHHHHhhHHH--hccceeEEEeccceeehHHHHHHHhhccCCCce---EEEEEEEeecCcceeec--CCCCCchhHheee
Confidence 6677777763 224557778999999999999987654332222 222222211111 1111 11000 0011111
Q ss_pred HhhccccccccccccceEEEehhhhhhhCCCCCCCc---cchHHHHHHHHHcCCeEEEEcceEE
Q 041566 387 QQVNGVFINFFGFNGTAGVWRIKALEECGGWLDRTT---VEDMDIAVRAHLCGWKFVYVNDVKC 447 (687)
Q Consensus 387 ~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~---~ED~~l~~rl~~~G~ri~~~~~a~~ 447 (687)
..-.+.+.+ +| -|-.+.||.+.+ ++|||+.... +||.++.......|.+++-.|++-.
T Consensus 374 ~~~tGfwRd-fG-fGmtc~yrsd~~-~vgGFD~~I~GWG~EDV~Ly~K~v~~~l~viR~p~pGl 434 (494)
T KOG3588|consen 374 KKDTGFWRD-FG-FGMTCQYRSDFL-TVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTPEPGL 434 (494)
T ss_pred ccccccccc-cC-CceeEEeeccce-eecCcceeeeccCcchHHHHHHHHhcCcEEEecCCCce
Confidence 111222222 22 366778877665 5799985433 6999999999999999999888763
No 85
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=97.10 E-value=0.0026 Score=66.96 Aligned_cols=125 Identities=14% Similarity=0.229 Sum_probs=63.1
Q ss_pred CeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCC---hhHHHHHHHHHHHHhh-cCcEEEEEeccC----
Q 041566 233 PMVLVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDD---LDVQLLIKAEVLKWQQ-RGVHIIYRHRLI---- 303 (687)
Q Consensus 233 P~VsViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~---d~t~~~l~~~~~~~~~-~~v~i~~~~r~~---- 303 (687)
-..+|||||.||+ ..++..|.++ |.+.. ||||.+++. |......+ .++++.+ ..-.+..+|..+
T Consensus 50 ~~maIVVP~KnE~l~lleGVL~gI-----Ph~C~-IIvVSNS~r~~~d~f~~E~d-~l~~f~~~t~r~~~~vHQkDp~lA 122 (381)
T PF09488_consen 50 SKMAIVVPCKNEKLKLLEGVLSGI-----PHDCL-IIVVSNSSREPVDRFKMEVD-LLKHFCRLTRRQIIIVHQKDPGLA 122 (381)
T ss_dssp TTEEEEEEESS--HHHHHHHHHCS------TTSE-EEEEE---CSSSCHHHHHHH-HHHHHHHHCT--EEEEETT-HHHH
T ss_pred hCcEEEEECCCCchhhhhhhhhcC-----CCCCe-EEEEECCCCCCccHHHHHHH-HHHHHHHhhcCceEEEecCCHHHH
Confidence 4689999999999 6676666654 66655 778888876 44433222 2222211 222333333321
Q ss_pred -----------------CCCChHhHHHHHhcccccCCccEEEEEcCCCCCCHH---HHHHHHHHHc-cCCCeEEEeeeee
Q 041566 304 -----------------RSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPD---FLKKTIPYFK-GNDDLALVQTRWS 362 (687)
Q Consensus 304 -----------------~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd---~L~~lv~~f~-~~p~vg~Vqg~~~ 362 (687)
-+.||+.+|-.|+--+.....+||-|+|||...|-. +.+.-.+-|. .......|--.|.
T Consensus 123 ~Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiPGaV~EYvk~yAAGf~ms~spytMVRi~W~ 202 (381)
T PF09488_consen 123 EAFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIPGAVNEYVKDYAAGFAMSESPYTMVRIHWR 202 (381)
T ss_dssp HHHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-HHHHHHHHHHHHHHHHC-SSSCEEEEEE--
T ss_pred HHHHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCcchHHHHHHHHHhhhcccCCCceEEEEEec
Confidence 123699999888764445678999999999987653 2333333332 2345566766666
Q ss_pred ec
Q 041566 363 FV 364 (687)
Q Consensus 363 ~~ 364 (687)
..
T Consensus 203 ~K 204 (381)
T PF09488_consen 203 SK 204 (381)
T ss_dssp --
T ss_pred CC
Confidence 53
No 86
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=97.10 E-value=0.033 Score=56.33 Aligned_cols=194 Identities=13% Similarity=0.091 Sum_probs=100.7
Q ss_pred CeEEEEeecCCch--HHH-HHHHH--HHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCC-
Q 041566 233 PMVLVQIPMCNER--EVY-GQSIA--AVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSG- 306 (687)
Q Consensus 233 P~VsViIP~yNE~--~~l-~~tL~--Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~g- 306 (687)
|..+++||.--.+ ..+ .+.+. ++.+---|.+..+|++++..+..+ ..+.++-+...++.|..-...+.
T Consensus 2 ~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~~d------~~i~~~i~~~~~~~yl~~~s~~~F 75 (346)
T COG4092 2 QPNGEIIPVAESEELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEVMD------RLIRSYIDPMPRVLYLDFGSPEPF 75 (346)
T ss_pred CCcceEeecchhhccchhHHHHHhhHhhhhhccccccEEEEEEecchhHH------HHHHHHhccccceEEEecCCCccc
Confidence 4567788875433 222 22222 222222245567888888776322 33334445667777764332211
Q ss_pred ---ChHhHHHHHhccc-ccCCccEEEEEcCCCCCCHHHHHHHHH-----HHccCCCeEEEeeeeeeccCCCChhH-Hhhh
Q 041566 307 ---YKAGNLNSAMGCD-YVKDYEFVAIFDADFQPTPDFLKKTIP-----YFKGNDDLALVQTRWSFVNKDENLLT-RLQN 376 (687)
Q Consensus 307 ---gKa~aLn~gl~~~-~~a~~d~V~~lDaD~~~~pd~L~~lv~-----~f~~~p~vg~Vqg~~~~~n~~~~~~~-r~~~ 376 (687)
++. -|.|...+ ...+.++|+++|+||....|-..+++. -+..+=+ +...-++.+.|...+..- ....
T Consensus 76 ~s~~~c--~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~-a~~vlPV~~LNk~~~~v~f~~~d 152 (346)
T COG4092 76 ASETIC--ANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNID-APLVLPVYHLNKADTQVFFDVED 152 (346)
T ss_pred cchhhh--hhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccC-cceeeeeeecchhhhhHHHHHHH
Confidence 233 23333321 134689999999999998776666663 3332222 333444555665332111 1111
Q ss_pred hhhh--hhHHHHHhhccccccccccccceEEEehhhhhhhCCCCCCCc---cchHHHHHHHHHc
Q 041566 377 INLS--FHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECGGWLDRTT---VEDMDIAVRAHLC 435 (687)
Q Consensus 377 ~~~~--~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~---~ED~~l~~rl~~~ 435 (687)
+... .......+.+.....+........++.+..+...||++++.. .||.++..|+...
T Consensus 153 ~f~d~~i~es~~~~~~~~~~ff~~~~T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l~ 216 (346)
T COG4092 153 MFLDAMIFESPLAEFRKEDNFFIAPYTNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGLY 216 (346)
T ss_pred HhhhhHhhhhHHHHhCcccccccccccceEEEehhHHHHhcCCccccccCCchhHHHHHHHHHH
Confidence 1110 000111111111111222334457889999999999998655 5999999998764
No 87
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=96.76 E-value=0.01 Score=62.32 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=61.1
Q ss_pred CCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCC---hhHHH---HHHHHHHHHhhcCcEEEEEecc--
Q 041566 232 YPMVLVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDD---LDVQL---LIKAEVLKWQQRGVHIIYRHRL-- 302 (687)
Q Consensus 232 ~P~VsViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~---d~t~~---~l~~~~~~~~~~~v~i~~~~r~-- 302 (687)
+-...|+|||.||. ..++..|.++ |.+.. ||||.+++. |.... +++..+. +.++.+-+++...+
T Consensus 49 ~~~maIVVP~KdE~l~lleGVL~gI-----Ph~c~-iIvVSNS~r~~~d~f~~E~d~~~~f~~-~t~r~~i~vHQkDp~l 121 (381)
T TIGR02460 49 LGKTAIVVPVKNEKLHLLEGVLSGI-----PHECP-IIIVSNSKREPPDRFKMEVDLIRHFSN-LTHRKIIIIHQKDPAL 121 (381)
T ss_pred HhCcEEEEEcCCCchhHHhhHhhcC-----CCCCe-EEEEeCCCCCChhHHHHHHHHHHHHHH-hhcCceEEEEcCCHHH
Confidence 34689999999999 6666666654 66555 777888765 32222 2222221 22233333322111
Q ss_pred ---------------C--CCCChHhHHHHHhcccccCCccEEEEEcCCCCCCH
Q 041566 303 ---------------I--RSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTP 338 (687)
Q Consensus 303 ---------------~--~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~p 338 (687)
+ -+.||+.+|-.|+--+.....+||-|+|||...|-
T Consensus 122 a~Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPG 174 (381)
T TIGR02460 122 AEAFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPG 174 (381)
T ss_pred HHHHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCc
Confidence 0 12369999888876443557899999999998765
No 88
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=96.74 E-value=0.01 Score=62.69 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=61.2
Q ss_pred CCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCC---hhHHH---HHHHHHHHHhhcCcEEEEEecc--
Q 041566 232 YPMVLVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDD---LDVQL---LIKAEVLKWQQRGVHIIYRHRL-- 302 (687)
Q Consensus 232 ~P~VsViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~---d~t~~---~l~~~~~~~~~~~v~i~~~~r~-- 302 (687)
+-...|||||.||. ..++..|.++ |.+.. ||||.+++. |.... +++..+. +.++.+-+++...+
T Consensus 50 ~~~mAIVVP~KdE~l~lleGVL~gI-----Ph~c~-iIvVSNS~r~~~d~f~~E~dlv~~f~~-~t~r~~i~vHQkDp~l 122 (393)
T PRK14503 50 LGRMAIVVPVKNERLKLLEGVLKGI-----PHECP-IIVVSNSKREPPDRFKLEVDLVRHFYR-LTQRPIIIVHQKDPGL 122 (393)
T ss_pred HhCcEEEEEcCCCchhHHhhHhhcC-----CCCCe-EEEEeCCCCCCchHHHHHHHHHHHHHh-hhcCceEEEEcCCHHH
Confidence 34689999999999 6666666654 76655 777877765 33222 2222221 22233333332211
Q ss_pred ---------------C--CCCChHhHHHHHhcccccCCccEEEEEcCCCCCCH
Q 041566 303 ---------------I--RSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTP 338 (687)
Q Consensus 303 ---------------~--~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~p 338 (687)
+ -+.||+.+|-.|+--+.....+||-|+|||...|-
T Consensus 123 a~Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPG 175 (393)
T PRK14503 123 AEALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPG 175 (393)
T ss_pred HHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCc
Confidence 0 12369999888876443557899999999998765
No 89
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=96.26 E-value=0.03 Score=53.32 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=64.0
Q ss_pred cCCch-HHHHHHHHHHHc-------CC----CCC---CceEEEEEcCCC---ChhHHHHHHHH-------HHH-Hh----
Q 041566 241 MCNER-EVYGQSIAAVCI-------QD----WPK---ERMLVQILDDSD---DLDVQLLIKAE-------VLK-WQ---- 290 (687)
Q Consensus 241 ~yNE~-~~l~~tL~Sl~~-------q~----yP~---~~leViVvDD~s---~d~t~~~l~~~-------~~~-~~---- 290 (687)
+|||+ ..+.+|+.++++ .. |.. .++.|.||-||. ++.+.+++... .+. -.
T Consensus 1 mYNEd~~ll~rTL~gv~~Ni~~l~~r~~s~~wG~d~WkkiVVcIv~DGr~ki~~~tl~~L~~lGvyq~gi~k~~v~~k~v 80 (163)
T PF01644_consen 1 MYNEDEILLARTLHGVMKNIAHLCSRKRSKTWGKDAWKKIVVCIVSDGRAKINPRTLDLLAALGVYQEGIAKNQVNGKPV 80 (163)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhCCcCCcCCCCCCcEEEEEEEecCcccCCHHHHHHHHHcCCCcchhhhhhcCCCcc
Confidence 69998 556777777653 21 222 268888999996 45555554432 000 00
Q ss_pred -------------------------hcCcEEEEEeccCCCCChHhHHHHHhccc-ccCCccEEEEEcCCCCCCHHHHHHH
Q 041566 291 -------------------------QRGVHIIYRHRLIRSGYKAGNLNSAMGCD-YVKDYEFVAIFDADFQPTPDFLKKT 344 (687)
Q Consensus 291 -------------------------~~~v~i~~~~r~~~~ggKa~aLn~gl~~~-~~a~~d~V~~lDaD~~~~pd~L~~l 344 (687)
...+.+++.-+++ +.+|-..-...++.. ..-+.+|++++|+.+.|.++.|..+
T Consensus 81 ~aHifEyTtq~~i~~~~~~~~~~~~~~PvQ~ifclKe~-N~kKinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~L 159 (163)
T PF01644_consen 81 TAHIFEYTTQLSIDSDLKFKGPEKNIVPVQIIFCLKEK-NAKKINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHL 159 (163)
T ss_pred eeEEEEecccceecccccccccccCCCCEEEEEEeccc-cccccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHH
Confidence 0112233333233 334655544444421 2568899999999999999999998
Q ss_pred HHHH
Q 041566 345 IPYF 348 (687)
Q Consensus 345 v~~f 348 (687)
.+.|
T Consensus 160 wkaf 163 (163)
T PF01644_consen 160 WKAF 163 (163)
T ss_pred HhhC
Confidence 8765
No 90
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=96.18 E-value=0.24 Score=56.38 Aligned_cols=202 Identities=13% Similarity=0.101 Sum_probs=110.9
Q ss_pred CCeEEEEeecCCc-hHHHHHHHHHHHcC-CCCCCceEEEEEcCCC---Chh---HHHHHHHHHHHHhhcCcEEEEEeccC
Q 041566 232 YPMVLVQIPMCNE-REVYGQSIAAVCIQ-DWPKERMLVQILDDSD---DLD---VQLLIKAEVLKWQQRGVHIIYRHRLI 303 (687)
Q Consensus 232 ~P~VsViIP~yNE-~~~l~~tL~Sl~~q-~yP~~~leViVvDD~s---~d~---t~~~l~~~~~~~~~~~v~i~~~~r~~ 303 (687)
..+|.||||..+. .+.+.+-++...+. --++++...+||..++ .+. +.+.+++...+++...+.++ ....
T Consensus 246 ~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i--~~~~ 323 (499)
T PF05679_consen 246 STRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWI--SVKT 323 (499)
T ss_pred CCEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEE--EecC
Confidence 4689999999999 66665555554331 0123334334443332 121 23345555455533344444 3332
Q ss_pred CCCChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeee--ccCCCChhHHhhhhhhhh
Q 041566 304 RSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSF--VNKDENLLTRLQNINLSF 381 (687)
Q Consensus 304 ~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~--~n~~~~~~~r~~~~~~~~ 381 (687)
..-.++.+|..|.+. ....++++++|-|..+++++|.++-..-..+.+ |-.|..| +|++-. ....... .-
T Consensus 324 ~~fsr~~~Ld~g~~~--~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~g~q---vy~PI~Fs~y~p~~~-~~~~~~~--~~ 395 (499)
T PF05679_consen 324 GEFSRGAALDVGAKK--FPPDSLLFFCDVDMVFTSDFLNRCRMNTIPGKQ---VYFPIVFSQYNPDIV-YAGKPPE--PD 395 (499)
T ss_pred CCccHHHHHHhhccc--CCCCcEEEEEeCCcccCHHHHHHHHHhhhcCcE---EEEeeeccccCCccc-ccCCCCc--cc
Confidence 344588889999884 456789999999999999999998765543222 3333333 222110 0000000 00
Q ss_pred hHHHHHhhccccccccccccceEEEehhhhhhh-CCCCCC---CccchHHHHHHHHHcC--CeEEEEcceE
Q 041566 382 HFEVEQQVNGVFINFFGFNGTAGVWRIKALEEC-GGWLDR---TTVEDMDIAVRAHLCG--WKFVYVNDVK 446 (687)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~i-GGf~~~---~~~ED~~l~~rl~~~G--~ri~~~~~a~ 446 (687)
.+.... ..|.+.. + --|-.++|+.+...-- ||++.. -.+||.++.-+..+.| .++.=.+++.
T Consensus 396 ~~~i~~-~~G~w~~-~-gfg~~~~YksDy~~~~~~~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~ep~ 463 (499)
T PF05679_consen 396 QFDISK-DTGFWRR-F-GFGMVCFYKSDYMRIRGGGFDLSIRGWGGEDVDLYDKFLKSGHKLHVFRAVEPG 463 (499)
T ss_pred cCccCC-CCCcccc-C-CCceEEEEhhhhhhhcccccccccccccccHHHHHHHHHhCCCceEEEEccCCC
Confidence 000000 1111111 1 1366678877766542 556543 2379999999999999 7777666664
No 91
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=95.84 E-value=0.051 Score=62.92 Aligned_cols=102 Identities=11% Similarity=0.182 Sum_probs=62.5
Q ss_pred CCeEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCC---hhHHH---HHHHHHHHHhhcCcEEEEEecc--
Q 041566 232 YPMVLVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDD---LDVQL---LIKAEVLKWQQRGVHIIYRHRL-- 302 (687)
Q Consensus 232 ~P~VsViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~---d~t~~---~l~~~~~~~~~~~v~i~~~~r~-- 302 (687)
.-...|||||.||. ..++..|.++ |.+.. ||||.+++. |.... +++..+. +.++.+-+++...+
T Consensus 54 ~~~~aivvp~k~e~~~~~~gvl~~i-----p~~c~-ii~vsns~r~~~d~~~~e~~~~~~~~~-~~~~~~~~vhq~dp~~ 126 (694)
T PRK14502 54 EKKMAIVLPIKDEDLKVFEGVLSGI-----PHDCL-MIVISNSSKQEVDNFKNEKDIVNRFCR-ITHRQAIVVHQKNPEL 126 (694)
T ss_pred HhCcEEEEEcCCCchhHHhhHhhcC-----CCCCe-EEEEeCCCCCchHHHHHHHHHHHHHHH-hhcCceEEEEcCCHHH
Confidence 34689999999999 6666666654 76655 777888765 32222 2222221 12233333332211
Q ss_pred ---------------C--CCCChHhHHHHHhcccccCCccEEEEEcCCCCCCHHH
Q 041566 303 ---------------I--RSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDF 340 (687)
Q Consensus 303 ---------------~--~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~ 340 (687)
. -+.||+.+|-.|+--+.....+||-|+|||...|-..
T Consensus 127 a~a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg~v 181 (694)
T PRK14502 127 ANAIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPGAV 181 (694)
T ss_pred HHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCchH
Confidence 0 1236999988887644456789999999999876533
No 92
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=95.25 E-value=0.15 Score=52.14 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=64.4
Q ss_pred HHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccCCccEEE
Q 041566 249 GQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKDYEFVA 328 (687)
Q Consensus 249 ~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~~d~V~ 328 (687)
.-|+.|+.+|+-|+... +++.|+...+..++.+++..+.++ .+++++. + .+....++..+++.......++++
T Consensus 45 ~~~LpSl~~QTd~dF~~-lv~~~~~~P~~~~~rL~~l~~~~p--~~~i~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~ 117 (234)
T PF11316_consen 45 TYCLPSLRAQTDQDFTW-LVLFDDDLPEPYRERLRDLLADYP--QFRIVFR--P--PGPHRDAMRRAINAARRDGADPVL 117 (234)
T ss_pred HHHhhHHHhccCCCeEE-EEEECCCCCHHHHHHHHHHhccCC--CcEEEec--C--CchHHHHHHHHHhhhccCCCCEEE
Confidence 45899999999887543 456777777777777777665433 2444433 2 333667777777432234566555
Q ss_pred E--EcCCCCCCHHHHHHHHHHHc
Q 041566 329 I--FDADFQPTPDFLKKTIPYFK 349 (687)
Q Consensus 329 ~--lDaD~~~~pd~L~~lv~~f~ 349 (687)
. +|+|+-++.|+++++-....
T Consensus 118 ~~RLDdDDAl~~dFV~rlr~~a~ 140 (234)
T PF11316_consen 118 QFRLDDDDALHRDFVARLRRAAA 140 (234)
T ss_pred EEEECCcchhhHHHHHHHHHHHH
Confidence 5 59999999999999998874
No 93
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=95.14 E-value=0.022 Score=47.75 Aligned_cols=47 Identities=28% Similarity=0.254 Sum_probs=33.8
Q ss_pred cccceEEEehhhhhhhCCCCCCCc---cchHHHHHHHHHcCCeEEEEcce
Q 041566 399 FNGTAGVWRIKALEECGGWLDRTT---VEDMDIAVRAHLCGWKFVYVNDV 445 (687)
Q Consensus 399 ~~G~~~~~Rr~aL~~iGGf~~~~~---~ED~~l~~rl~~~G~ri~~~~~a 445 (687)
+.|...+++++.+.++|||++... .||.|+..|+...|.++...+..
T Consensus 19 ~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~ 68 (78)
T PF02709_consen 19 FFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGS 68 (78)
T ss_dssp ---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SSTT
T ss_pred eeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCCc
Confidence 578889999999999999998766 49999999999999987775543
No 94
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=95.03 E-value=0.98 Score=46.26 Aligned_cols=123 Identities=13% Similarity=0.068 Sum_probs=76.0
Q ss_pred EEEEeecCCchHHHHHHHH-HHHc--CCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCC------
Q 041566 235 VLVQIPMCNEREVYGQSIA-AVCI--QDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRS------ 305 (687)
Q Consensus 235 VsViIP~yNE~~~l~~tL~-Sl~~--q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~------ 305 (687)
|-|..-.||.++.+..... ++++ .-..++++-|.|.+++|.|.|.+.++.+...+...+++-.+...+..+
T Consensus 2 ~fIA~~l~~~~~iL~~~~~~~ll~li~~LGp~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~~~~ 81 (241)
T PF11735_consen 2 YFIAANLYNNEDILPSLWGDALLELIRFLGPENVFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRDEIER 81 (241)
T ss_pred EEEEEEcccCHhHHHHHHHHHHHHHHHHhCcCeEEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCcccccccc
Confidence 4455557877766654444 4443 112345688999999999999999998887777778775554422111
Q ss_pred -------CChHhHHHHHhccc------ccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEee
Q 041566 306 -------GYKAGNLNSAMGCD------YVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQT 359 (687)
Q Consensus 306 -------ggKa~aLn~gl~~~------~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg 359 (687)
.+-|.-.|.+++-- .....|-|++++ |....+.-+-+++..-.. .+.+++++
T Consensus 82 ~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~~-~~~~~aCa 146 (241)
T PF11735_consen 82 PPRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRNR-GNYDMACA 146 (241)
T ss_pred cchhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcCc-ccccchhh
Confidence 11234456666521 234567899999 888877666666655431 34444444
No 95
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=93.99 E-value=0.05 Score=57.06 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=55.7
Q ss_pred eEEEEeecCCch-HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEecc---------C
Q 041566 234 MVLVQIPMCNER-EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRL---------I 303 (687)
Q Consensus 234 ~VsViIP~yNE~-~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~---------~ 303 (687)
.|+|+||+-+.. ...-+.-+.+.+ ++++|||-|+...+...+- .|.......+. .
T Consensus 9 ~~divi~~~~~~l~~~~~~wr~~~~------~~hliiv~d~~~~~~~~~p---------~g~~~~~y~~~di~~~lg~~~ 73 (348)
T PF03214_consen 9 EVDIVIPALRPNLTDFLEEWRPFFS------PYHLIIVQDPDPNEEIKVP---------EGFDYEVYNRNDIERVLGAKT 73 (348)
T ss_pred cccEEeecccccHHHHHHHHHHhhc------ceeEEEEeCCCccccccCC---------cccceeeecHhhHHhhcCCcc
Confidence 489999998754 233333444433 3778888888755433221 12211111110 1
Q ss_pred CCCChHhH-HHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHcc
Q 041566 304 RSGYKAGN-LNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKG 350 (687)
Q Consensus 304 ~~ggKa~a-Ln~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~ 350 (687)
...+|.+| .|.|+- .++.+|++++|.|+.|..|..-..+..+.+
T Consensus 74 ~i~~~~~a~R~fGyL---~s~~~yivsiDDD~~P~~D~~g~~~~~v~q 118 (348)
T PF03214_consen 74 LIPFKGDACRNFGYL---VSKKDYIVSIDDDCLPAKDDFGTHIDAVAQ 118 (348)
T ss_pred cccccccchhhhHhh---hcccceEEEEccccccccCCccceehhhhc
Confidence 11223332 455655 568899999999999977765555554443
No 96
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=93.14 E-value=0.62 Score=49.18 Aligned_cols=179 Identities=15% Similarity=0.190 Sum_probs=99.7
Q ss_pred CeEEEEeecCCchHHHHHHHHHHH----cCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCCh
Q 041566 233 PMVLVQIPMCNEREVYGQSIAAVC----IQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYK 308 (687)
Q Consensus 233 P~VsViIP~yNE~~~l~~tL~Sl~----~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggK 308 (687)
-+|.|+||-+|.++.+..-+.-+. +|.- .+-|+|++...++. =.+
T Consensus 151 ~kvAIIIPfR~Re~HL~~~l~~LhP~LqrQrL---~y~iyVieQ~g~~~----------------------------FNR 199 (372)
T KOG3916|consen 151 HKVAIIIPFRNREEHLRYLLHHLHPFLQRQRL---DYRIYVIEQAGNKP----------------------------FNR 199 (372)
T ss_pred ceeEEEeecccHHHHHHHHHHHhhHHHHhhhh---ceeEEEEEecCCCc----------------------------ccH
Confidence 389999999999877666655432 2221 13355554322221 124
Q ss_pred HhHHHHHhcccc-cCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHH
Q 041566 309 AGNLNSAMGCDY-VKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQ 387 (687)
Q Consensus 309 a~aLn~gl~~~~-~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~ 387 (687)
|.-+|.|+..+. ....|-++|-|-|..|..| -+. ..++.+ ..-+...+-.+.|...
T Consensus 200 akL~NVGf~eAlkd~~wdCfIFHDVDllPenD------------rNl-Y~C~~~-----PRH~sva~dk~gy~LP----- 256 (372)
T KOG3916|consen 200 AKLLNVGFLEALKDYGWDCFIFHDVDLLPEND------------RNL-YGCPEQ-----PRHMSVALDKFGYRLP----- 256 (372)
T ss_pred HHhhhhHHHHHHHhcCCCEEEEecccccccCC------------CCc-cCCCCC-----Ccchhhhhhhcccccc-----
Confidence 555666665432 3567889999999988653 111 111110 0111111111111111
Q ss_pred hhccccccccccccceEEEehhhhhhhCCCCCCCc---cchHHHHHHHHHcCCeEEEEc-ceEEe----e----c--cCc
Q 041566 388 QVNGVFINFFGFNGTAGVWRIKALEECGGWLDRTT---VEDMDIAVRAHLCGWKFVYVN-DVKCL----C----E--LPE 453 (687)
Q Consensus 388 ~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~---~ED~~l~~rl~~~G~ri~~~~-~a~~~----~----e--~P~ 453 (687)
..+ +-|.-.+..++-++++.||+.... +||-|++.|+...|+++---+ +.--+ + + -|.
T Consensus 257 -Y~~-------~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~~~igrYkMikH~~k~n~~n~~ 328 (372)
T KOG3916|consen 257 -YKE-------YFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPPPEIGRYKMIKHHDKGNEPNPG 328 (372)
T ss_pred -chh-------hhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeecCCCccceeEEeecccccCCCChH
Confidence 112 334446678999999999976544 699999999999999874332 22111 1 1 133
Q ss_pred CHHHHHHHHHHhhcccHHHH
Q 041566 454 SYEAYKKQQHRWHSGPMQLF 473 (687)
Q Consensus 454 t~~~~~~Qr~RW~~G~~q~~ 473 (687)
.++-..+-..||....++..
T Consensus 329 Ry~lL~~tk~r~~~DGLnsl 348 (372)
T KOG3916|consen 329 RYKLLRNTKERQTQDGLNSL 348 (372)
T ss_pred HHHHHHhhhhhhhhccccce
Confidence 34455555677777655543
No 97
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=92.86 E-value=0.83 Score=49.35 Aligned_cols=211 Identities=13% Similarity=0.092 Sum_probs=109.8
Q ss_pred eEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHH------------------HHHHHH-----HH-
Q 041566 234 MVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLL------------------IKAEVL-----KW- 289 (687)
Q Consensus 234 ~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~------------------l~~~~~-----~~- 289 (687)
+|-|.|+.|...+ +..||.++.++.-.++++.|-|++....++..-. ...... .+
T Consensus 1 tIFvsiasyRD~~-c~~Tl~~~~~~A~~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 79 (343)
T PF11397_consen 1 TIFVSIASYRDPE-CAPTLKDLFARATNPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSACAEWP 79 (343)
T ss_pred CEEEEEeeecCch-HHHHHHHHHHhcCCCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhcccccccc
Confidence 3678899999865 8899999887654446888888876543222200 000110 00
Q ss_pred ------hhcCcEEEEEeccCCCCChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHcc--CCCeEEEeeee
Q 041566 290 ------QQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKG--NDDLALVQTRW 361 (687)
Q Consensus 290 ------~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~--~p~vg~Vqg~~ 361 (687)
....++++.++...-. |-.-|.+.+.+. -.+-+|++.+||.+...++|=+.++..+.. +++ +++++..
T Consensus 80 ~~~~~~~~~~Ir~~~~~~~~a~-Gp~~AR~la~~l--~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~-aVLS~YP 155 (343)
T PF11397_consen 80 DGALCLRSDQIRVIRVDASEAR-GPCWARYLAQKL--YRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPK-AVLSTYP 155 (343)
T ss_pred cccccccCCeEEEEEeCHHHCc-ChHHHHHHHHHH--hCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCC-eEEecCC
Confidence 0122333333222222 344444444442 356789999999999999887777766653 344 4454433
Q ss_pred eeccC-CC------ChhHHhhhhhh-hhhHHH--HHhhccc---cc-cccccccceEEE-ehhhhhhhCCCCCCC----c
Q 041566 362 SFVNK-DE------NLLTRLQNINL-SFHFEV--EQQVNGV---FI-NFFGFNGTAGVW-RIKALEECGGWLDRT----T 422 (687)
Q Consensus 362 ~~~n~-~~------~~~~r~~~~~~-~~~~~~--~~~~~~~---~~-~~~~~~G~~~~~-Rr~aL~~iGGf~~~~----~ 422 (687)
.-++. +. +....+-...+ ...... ....... .. ....+.+++..| +-++++++ .+++.. .
T Consensus 156 ~~~~~~~~~~~~~~~~~~~lc~~~~~~~g~~~~~~~~~~~~~~~~~P~~~~f~aaGF~Fa~~~~~~eV-P~DP~lp~lF~ 234 (343)
T PF11397_consen 156 PGYEPDGGQPEPEKTTVPRLCAARFGPDGMVRLGARWIKPAPKLEEPVPQPFWAAGFSFAPGHFVREV-PYDPHLPFLFD 234 (343)
T ss_pred CCcccccCCccccCCcccEEEEeEECCCCcEeecceecccccccCCCeeeceecccEEEcchhheecC-CCCCCcccccc
Confidence 32222 00 10111000000 000000 0000000 00 011234444444 55666666 566544 3
Q ss_pred cchHHHHHHHHHcCCeEEEEcceEEeec
Q 041566 423 VEDMDIAVRAHLCGWKFVYVNDVKCLCE 450 (687)
Q Consensus 423 ~ED~~l~~rl~~~G~ri~~~~~a~~~~e 450 (687)
+|.+.++.|+..+||.+..-+...+++.
T Consensus 235 GEE~~~aaRlwT~GYD~Y~P~~~v~~H~ 262 (343)
T PF11397_consen 235 GEEISMAARLWTHGYDFYSPTRNVLFHL 262 (343)
T ss_pred cHHHHHHHHHHHcCCccccCCCceeEEE
Confidence 8999999999999999765555555554
No 98
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=1.5 Score=45.88 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=70.1
Q ss_pred CCeEEEEeecCCch---HHHHHHHHHHHcCCCCCCceEEEEEcCCC--ChhHHHHHHHHHHHHhhcCcEEEEEeccCCCC
Q 041566 232 YPMVLVQIPMCNER---EVYGQSIAAVCIQDWPKERMLVQILDDSD--DLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSG 306 (687)
Q Consensus 232 ~P~VsViIP~yNE~---~~l~~tL~Sl~~q~yP~~~leViVvDD~s--~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~g 306 (687)
.|+|-||-|+|+.. ..+.+.-.++.. -| .++-|||+|+. ++.+..+++ ..|+...|..-+...+
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL~~--V~--nLhWIVVEd~~~~~p~v~~~L~-------rtgl~ythl~~~t~~~ 154 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTLRL--VP--NLHWIVVEDGEGTTPEVSGILR-------RTGLPYTHLVHKTPMG 154 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHHhh--cC--CeeEEEEecCCCCCHHHHHHHH-------HcCCceEEEeccCCCC
Confidence 78999999999987 223332222322 24 38899999984 556666665 4777777776666666
Q ss_pred Ch----HhHHHHHhcccc------cCCccEEEEEcCCCCCCHHHHHHHHHHH
Q 041566 307 YK----AGNLNSAMGCDY------VKDYEFVAIFDADFQPTPDFLKKTIPYF 348 (687)
Q Consensus 307 gK----a~aLn~gl~~~~------~a~~d~V~~lDaD~~~~pd~L~~lv~~f 348 (687)
+| -...|.|+++.. ....-+|.|-|+|...+-+..++ ++..
T Consensus 155 ~~~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e-iR~v 205 (330)
T KOG1476|consen 155 YKARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE-IRNV 205 (330)
T ss_pred CccccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH-Hhcc
Confidence 66 346677776421 24456888999999998877776 4443
No 99
>PLN02458 transferase, transferring glycosyl groups
Probab=92.03 E-value=2.2 Score=45.06 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=63.8
Q ss_pred CCCeEEEEeecCCc-h---HHHHHHHHHHHcCCCCCCceEEEEEcCCC-ChhHHHHHHHHHHHHhhcCcEEEEEeccCC-
Q 041566 231 DYPMVLVQIPMCNE-R---EVYGQSIAAVCIQDWPKERMLVQILDDSD-DLDVQLLIKAEVLKWQQRGVHIIYRHRLIR- 304 (687)
Q Consensus 231 ~~P~VsViIP~yNE-~---~~l~~tL~Sl~~q~yP~~~leViVvDD~s-~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~- 304 (687)
..+.|-||-|+|.. . ..+.+.-..+..-.+| ++-|||+|+. ++.+.++++ ..|+...+..-+.+
T Consensus 110 ~~rlIivVTPTY~rR~~Q~a~LTRLahTL~lVp~p---L~WIVVEd~~~t~~va~lLr-------rsGl~y~HL~~k~~~ 179 (346)
T PLN02458 110 PRRLVIIVTPISTKDRYQGVLLRRLANTLRLVPPP---LLWIVVEGQSDSEEVSEMLR-------KTGIMYRHLVFKENF 179 (346)
T ss_pred CCceEEEECCCCCCcchhHHHHHHHHHHHhcCCCC---ceEEEEeCCCCCHHHHHHHH-------HcCCceEEeccCCCC
Confidence 34579999999973 3 3444444444444322 7788999875 334444444 46776665543222
Q ss_pred ---CCChHhHHHHHhccc-ccCCccEEEEEcCCCCCCHHHHHHH
Q 041566 305 ---SGYKAGNLNSAMGCD-YVKDYEFVAIFDADFQPTPDFLKKT 344 (687)
Q Consensus 305 ---~ggKa~aLn~gl~~~-~~a~~d~V~~lDaD~~~~pd~L~~l 344 (687)
.+......|.|+++. .....-+|.|.|+|...+-+..+++
T Consensus 180 ~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEm 223 (346)
T PLN02458 180 TDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEI 223 (346)
T ss_pred CCccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHH
Confidence 122345678888753 1234568999999999988777663
No 100
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=92.03 E-value=1.9 Score=43.41 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=64.4
Q ss_pred CeEEEEeecCCch---HHHHHHHHHHHcCCCCCCceEEEEEcCCC--ChhHHHHHHHHHHHHhhcCcEEEEEeccCC---
Q 041566 233 PMVLVQIPMCNER---EVYGQSIAAVCIQDWPKERMLVQILDDSD--DLDVQLLIKAEVLKWQQRGVHIIYRHRLIR--- 304 (687)
Q Consensus 233 P~VsViIP~yNE~---~~l~~tL~Sl~~q~yP~~~leViVvDD~s--~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~--- 304 (687)
|.+-||-|+|... ..+.+.-..+..- | .++-|||+|+. ++.+.++++ +.|+...+..-+.+
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~lV--p--~l~WIVVEd~~~~t~~va~lL~-------~sgl~y~HL~~~~~~~~ 69 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLRLV--P--PLHWIVVEDSEEKTPLVAELLR-------RSGLMYTHLNAKTPSDP 69 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHHhcC--C--ceEEEEEeCCCCCCHHHHHHHH-------HcCCceEEeccCCCCCc
Confidence 5788999999887 3444444444433 3 38899999986 455555555 46776666543322
Q ss_pred CC---ChHhHHHHHhcccc-c---CCccEEEEEcCCCCCCHHHHHH
Q 041566 305 SG---YKAGNLNSAMGCDY-V---KDYEFVAIFDADFQPTPDFLKK 343 (687)
Q Consensus 305 ~g---gKa~aLn~gl~~~~-~---a~~d~V~~lDaD~~~~pd~L~~ 343 (687)
+. .-....|.|+++.. . ...-+|.|.|+|...+-+..++
T Consensus 70 ~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~e 115 (223)
T cd00218 70 TWLKPRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEE 115 (223)
T ss_pred ccCCcccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHH
Confidence 11 12345778877531 1 3456899999999999887777
No 101
>KOG1413 consensus N-acetylglucosaminyltransferase I [Carbohydrate transport and metabolism]
Probab=91.68 E-value=1.6 Score=46.38 Aligned_cols=176 Identities=19% Similarity=0.180 Sum_probs=108.8
Q ss_pred CCCCeEEEEeecCCchHHHHHHHHHHHcCCCC-CCceEEEEEcCCCChhHHHHHHHHHHHHh--h----cCcEEEEEecc
Q 041566 230 EDYPMVLVQIPMCNEREVYGQSIAAVCIQDWP-KERMLVQILDDSDDLDVQLLIKAEVLKWQ--Q----RGVHIIYRHRL 302 (687)
Q Consensus 230 ~~~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP-~~~leViVvDD~s~d~t~~~l~~~~~~~~--~----~~v~i~~~~r~ 302 (687)
...|.+-|++-++|.++.++.+++.++.+. | .+++.|+|.-|+++..+.+.++....... . ....+....++
T Consensus 64 ~~~~v~pvvVf~csR~~~lr~~v~kll~yr-PsaekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~v~~~~ 142 (411)
T KOG1413|consen 64 NWPPVIPVVVFACSRADALRRHVKKLLEYR-PSAEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEISVPPRH 142 (411)
T ss_pred CCCCceeEEEEecCcHHHHHHHHHHHHHhC-cchhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccccCCcc
Confidence 335578888899999999999999999988 5 45778999999999988877765422110 0 11112211111
Q ss_pred C-CCCChHh------HHHHHhcccccCCccEEEEEcCCCCCCHHHH---HHHHHHHccCCCeEEEeeeeeeccCCCChhH
Q 041566 303 I-RSGYKAG------NLNSAMGCDYVKDYEFVAIFDADFQPTPDFL---KKTIPYFKGNDDLALVQTRWSFVNKDENLLT 372 (687)
Q Consensus 303 ~-~~ggKa~------aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L---~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~ 372 (687)
. .++++.- |+|..+. ..+.+.+++.-+|.-..|||. +.+...++.||.+-+|+.- -.|+.+..+.
T Consensus 143 ~k~~~Yy~IarHYkwAL~q~F~---~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcvsaW--NDNGk~~~Id 217 (411)
T KOG1413|consen 143 KKFNAYYKIARHYKWALNQLFI---VFRESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCVSAW--NDNGKKQTID 217 (411)
T ss_pred cccchhHHHHHHHHHHHhhHHh---hcCCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEeeee--ccCCCccccc
Confidence 1 1223322 4555554 567899999999998888775 5566677788888777642 2333322111
Q ss_pred HhhhhhhhhhHHHHHhhccccccccccccceEEEehhhhhhhC-CCCCCCccchH
Q 041566 373 RLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECG-GWLDRTTVEDM 426 (687)
Q Consensus 373 r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iG-Gf~~~~~~ED~ 426 (687)
..+. .-.... . .+.|-+-|..++..+|.. +|+. .+-||+
T Consensus 218 ~~~~---------~~lYRt---D--FFpGLGWml~~~~W~ELsp~wP~-~fWDDW 257 (411)
T KOG1413|consen 218 STRP---------SLLYRT---D--FFPGLGWMLTKKLWEELSPKWPV-AFWDDW 257 (411)
T ss_pred cccc---------chhhhc---c--ccccchHHHHHHHHHhhCCCCcc-cchhhh
Confidence 1000 000011 1 167888888899999875 4533 455665
No 102
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=91.67 E-value=0.6 Score=48.92 Aligned_cols=103 Identities=17% Similarity=0.078 Sum_probs=70.5
Q ss_pred eEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEecc--CCCC----C
Q 041566 234 MVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRL--IRSG----Y 307 (687)
Q Consensus 234 ~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~--~~~g----g 307 (687)
..+-.|-+.||++.++++|+|++..- ++ .++.-+.++|+|.|++.+.++++|+ -+.+.|-... .+.. .
T Consensus 88 ~~~~~iRvKnE~~tl~~si~S~Lpai---~~--gVI~yNdc~D~t~Eiil~fckkyP~-fip~~Ypy~v~~~n~~~~~n~ 161 (347)
T PF06306_consen 88 NPWAFIRVKNEAMTLAESIESILPAI---DE--GVIGYNDCTDGTEEIILEFCKKYPS-FIPIKYPYEVIIKNPKSEENS 161 (347)
T ss_pred CcceEEEEcchhhhHHHHHHHHHHHH---hc--cEEEeecCCCCHHHHHHHHHHhCcc-cccccCcchhhccCCchhhhh
Confidence 57888999999999999999998531 12 4556666788899999999998875 3444442211 1111 1
Q ss_pred hHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHH
Q 041566 308 KAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKT 344 (687)
Q Consensus 308 Ka~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~l 344 (687)
...=-|+++. ...++++++=+|+|.+.+++-|-+.
T Consensus 162 l~~YYNy~ls--~ipk~~w~iKID~DhIy~~~KL~ks 196 (347)
T PF06306_consen 162 LYNYYNYVLS--FIPKNEWAIKIDADHIYDTKKLYKS 196 (347)
T ss_pred hhhhhhhhhc--ccccceEEEEeccceeecHHHHhhh
Confidence 2222344443 2467899999999999999876443
No 103
>PLN02917 CMP-KDO synthetase
Probab=91.49 E-value=3.8 Score=43.36 Aligned_cols=184 Identities=11% Similarity=0.083 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccCCc
Q 041566 245 REVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKDY 324 (687)
Q Consensus 245 ~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~~ 324 (687)
...+..+++.+.+.. +.+ . |+|..| ++...+.++ +.++.++... ....+|-.++ ..+++.. ..+.
T Consensus 72 kPLL~~vi~~a~~~~-~~~-~-VVV~~~--~e~I~~~~~-------~~~v~vi~~~-~~~~~GT~~~-~~a~~~l-~~~~ 136 (293)
T PLN02917 72 KPMIQRTWERAKLAT-TLD-H-IVVATD--DERIAECCR-------GFGADVIMTS-ESCRNGTERC-NEALKKL-EKKY 136 (293)
T ss_pred EEHHHHHHHHHHcCC-CCC-E-EEEECC--hHHHHHHHH-------HcCCEEEeCC-cccCCchHHH-HHHHHhc-cCCC
Confidence 357888888887654 222 2 445432 344443332 3455554322 2223444444 4566531 2247
Q ss_pred cEEEEEcCCC-CCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhh---hh-hhhhhHH---H-H-Hhhccccc
Q 041566 325 EFVAIFDADF-QPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQ---NI-NLSFHFE---V-E-QQVNGVFI 394 (687)
Q Consensus 325 d~V~~lDaD~-~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~---~~-~~~~~~~---~-~-~~~~~~~~ 394 (687)
|+|+++++|. ..+++.+++++..+.++++..+.+.-..+...+..-..+.. +- .....|. . + ......-.
T Consensus 137 d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~~ 216 (293)
T PLN02917 137 DIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQ 216 (293)
T ss_pred CEEEEecCCcCCCCHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccccc
Confidence 8999999999 56999999999988755554443331111101111111110 00 0000000 0 0 00000001
Q ss_pred cccccccceEEEehhhhhhhCCCCCCCc-cchHHHHHHHHHcCCeEEEEc
Q 041566 395 NFFGFNGTAGVWRIKALEECGGWLDRTT-VEDMDIAVRAHLCGWKFVYVN 443 (687)
Q Consensus 395 ~~~~~~G~~~~~Rr~aL~~iGGf~~~~~-~ED~~l~~rl~~~G~ri~~~~ 443 (687)
...-.+...++||++.|.....++.... .|-.-.-+++..+|+++..++
T Consensus 217 ~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl~~le~G~~i~~~~ 266 (293)
T PLN02917 217 FPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLKVLENGYKMKVIK 266 (293)
T ss_pred cceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHHHHHhCCCceEEEE
Confidence 1111355568899999987665554333 222222234779999987664
No 104
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=91.10 E-value=3.4 Score=41.78 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=60.1
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccC----CCCChHhHHHHHhcc
Q 041566 243 NEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLI----RSGYKAGNLNSAMGC 318 (687)
Q Consensus 243 NE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~----~~ggKa~aLn~gl~~ 318 (687)
+....+..+|+++++..... + |+|+.| ++++.+.++ ..+..+.+. |+. ..-+....+..|++.
T Consensus 22 ~GkpLi~~ti~~a~~s~~~d-~--IvVstd--~~~i~~~a~-------~~g~~v~~~-r~~~l~~d~~~~~~si~~~l~~ 88 (222)
T TIGR03584 22 CGKPMIAYSIEAALNSGLFD-K--VVVSTD--DEEIAEVAK-------SYGASVPFL-RPKELADDFTGTAPVVKHAIEE 88 (222)
T ss_pred CCcCHHHHHHHHHHhCCCCC-E--EEEeCC--CHHHHHHHH-------HcCCEeEEe-ChHHHcCCCCCchHHHHHHHHH
Confidence 44568889999998865433 2 444333 233333332 356665442 322 122466777777763
Q ss_pred ccc-CCccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 319 DYV-KDYEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 319 ~~~-a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
... .+.|.|+++++|. ...++.+++++..+.+
T Consensus 89 l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~ 122 (222)
T TIGR03584 89 LKLQKQYDHACCIYATAPFLQAKILKEAFELLKQ 122 (222)
T ss_pred HhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHh
Confidence 211 3479999999999 5599999999999975
No 105
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=90.65 E-value=4.9 Score=41.07 Aligned_cols=182 Identities=12% Similarity=0.105 Sum_probs=89.0
Q ss_pred chHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccCC
Q 041566 244 EREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKD 323 (687)
Q Consensus 244 E~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~ 323 (687)
....+..+++.+.+.. -++ |+|+-| ++...+.+ + +.+++++.. .....+|... +..+++.....+
T Consensus 23 GkPli~~~le~~~~~~--~d~--VvVvt~--~~~i~~~~----~---~~g~~~v~~-~~~~~~Gt~r-~~~~~~~l~~~~ 87 (238)
T TIGR00466 23 GKPMIVHVAENANESG--ADR--CIVATD--DESVAQTC----Q---KFGIEVCMT-SKHHNSGTER-LAEVVEKLALKD 87 (238)
T ss_pred CcCHHHHHHHHHHhCC--CCe--EEEEeC--HHHHHHHH----H---HcCCEEEEe-CCCCCChhHH-HHHHHHHhCCCC
Confidence 4457888888877643 334 444433 23333222 2 345655432 2223344332 222332110235
Q ss_pred ccEEEEEcCCC-CCCHHHHHHHHHHHccCCCeEEEeeeeeeccCC----CChhHHhhhh-hhhhhHHH-----HHh----
Q 041566 324 YEFVAIFDADF-QPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKD----ENLLTRLQNI-NLSFHFEV-----EQQ---- 388 (687)
Q Consensus 324 ~d~V~~lDaD~-~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~----~~~~~r~~~~-~~~~~~~~-----~~~---- 388 (687)
.|+|+++|+|. .++|+.+++++..+.+ ++.+++..-....+.. .+-.....+. ...+.+.. .+.
T Consensus 88 ~d~Vli~~gD~Pli~~~~I~~li~~~~~-~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~~ 166 (238)
T TIGR00466 88 DERIVNLQGDEPFIPKEIIRQVADNLAT-KNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAK 166 (238)
T ss_pred CCEEEEEcCCcCcCCHHHHHHHHHHHhc-CCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcccc
Confidence 78999999998 5799999999999853 3333333322222100 0000000000 00000000 000
Q ss_pred hccccc-cccccccceEEEehhhhhhhCCCCCCCc--cchHHHHHHHHHcCCeEEEEc
Q 041566 389 VNGVFI-NFFGFNGTAGVWRIKALEECGGWLDRTT--VEDMDIAVRAHLCGWKFVYVN 443 (687)
Q Consensus 389 ~~~~~~-~~~~~~G~~~~~Rr~aL~~iGGf~~~~~--~ED~~l~~rl~~~G~ri~~~~ 443 (687)
...... ... .+=....||+++|++.-.++...+ .|+.+- +|+..+|+++....
T Consensus 167 ~~tpq~~~~~-~h~Giy~~~~~~L~~~~~~~~~~le~~e~leq-lr~le~g~~i~~~~ 222 (238)
T TIGR00466 167 RQTPVGDNLL-RHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQ-LRVLYYGEKIHVKI 222 (238)
T ss_pred ccccccccee-EEEEEEeCCHHHHHHHHhCCCCcccccchhHH-HhhhhcCCceEEEE
Confidence 000000 011 122347789999999766654433 466654 88999999987754
No 106
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=90.40 E-value=1.5 Score=43.35 Aligned_cols=182 Identities=14% Similarity=0.058 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEEcCCC--ChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChH-hHHHHHhcccccC
Q 041566 246 EVYGQSIAAVCIQDWPKERMLVQILDDSD--DLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKA-GNLNSAMGCDYVK 322 (687)
Q Consensus 246 ~~l~~tL~Sl~~q~yP~~~leViVvDD~s--~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa-~aLn~gl~~~~~a 322 (687)
+.|++|-.+.....-..-++ ++|+-... +....+.++++.+++.+- +..-+.....+...|. .+++.+.++ -.
T Consensus 4 ~~IR~TW~~~~~~~~~~~~~-~FvvG~~~~~~~~~~~~l~~E~~~y~Di-l~~d~~D~y~nlt~K~~~~~~w~~~~--c~ 79 (195)
T PF01762_consen 4 QAIRETWGNQRNFKGVRVKV-VFVVGESPNSDSDLQEALQEEAEKYGDI-LQGDFVDSYRNLTLKTLAGLKWASKH--CP 79 (195)
T ss_pred HHHHHHHhcccccCCCcEEE-EEEEecCCCCcHHHHHHhhhhhhhcCce-EeeecccccchhhHHHHHHHHHHHhh--CC
Confidence 56677766655433222222 44554444 444555566555543221 1111111111222343 345555552 34
Q ss_pred CccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeec-cCCCChhHHhhhhhhhhhHHHHHhhcccccccccccc
Q 041566 323 DYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFV-NKDENLLTRLQNINLSFHFEVEQQVNGVFINFFGFNG 401 (687)
Q Consensus 323 ~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~-n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G 401 (687)
+.+||+.+|+|+.+.++.|...+.....++.-..+.|..... ....+...++.. .........+ .. .+.|
T Consensus 80 ~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v-------~~~~y~~~~y-P~-y~~G 150 (195)
T PF01762_consen 80 NAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYV-------SEEEYPDDYY-PP-YCSG 150 (195)
T ss_pred chhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCcee-------eeeecccccC-CC-cCCC
Confidence 589999999999999988888777762122222222221111 000000011100 0000011111 11 2579
Q ss_pred ceEEEehhhhhhhCCC---CCCCccchHHHHHHHHHcCCeEE
Q 041566 402 TAGVWRIKALEECGGW---LDRTTVEDMDIAVRAHLCGWKFV 440 (687)
Q Consensus 402 ~~~~~Rr~aL~~iGGf---~~~~~~ED~~l~~rl~~~G~ri~ 440 (687)
.+.++.+++++.+... .+....||..++..+...|.+..
T Consensus 151 ~~yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~ 192 (195)
T PF01762_consen 151 GGYVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPI 192 (195)
T ss_pred CeEEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCcc
Confidence 9999999999886321 13334799999999999887644
No 107
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=88.99 E-value=1.3 Score=45.58 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=59.7
Q ss_pred EEEeec-CCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHH
Q 041566 236 LVQIPM-CNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNS 314 (687)
Q Consensus 236 sViIP~-yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~ 314 (687)
+|+|-+ |+..+.+.+.|.++.+..+-. ++.|+-.++...+.. .++...++.|.++.... ..||.
T Consensus 2 Tvvi~t~~~R~~~L~~~l~~l~~~~~l~-~IvVvWn~~~~~P~~--------~~~~~~~vpV~~~~~~~------nsLnn 66 (247)
T PF09258_consen 2 TVVINTSYKRSDLLKRLLRHLASSPSLR-KIVVVWNNPNPPPPS--------SKWPSTGVPVRVVRSSR------NSLNN 66 (247)
T ss_dssp EEEEEE-SS-HHHHHHHHHHHTTSTTEE-EEEEEEE-TS--THH--------HHHT---S-EEEEEESS------HHGGG
T ss_pred EEEEEecccchHHHHHHHHHHHcCCCCC-eEEEEeCCCCCCCcc--------cccCCCCceEEEEecCC------ccHHh
Confidence 678888 998999999999997665432 333333332222222 22334556666653221 22222
Q ss_pred HhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCC
Q 041566 315 AMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDD 353 (687)
Q Consensus 315 gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~ 353 (687)
-+.-...-+.|-|+.+|+|..++++.|+......+++|+
T Consensus 67 RF~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pd 105 (247)
T PF09258_consen 67 RFLPDPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPD 105 (247)
T ss_dssp GGS--TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTT
T ss_pred cCcCccccCcceEEEecCCcccCHHHHHHHHHHHHhChh
Confidence 222112456799999999999999999999999988886
No 108
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=87.59 E-value=3.1 Score=49.32 Aligned_cols=182 Identities=14% Similarity=0.115 Sum_probs=97.2
Q ss_pred ChHhHHHHHhcccccCCccEEEEEcCC--CCCCH-HHHHHHHHHHcc-----------------CCCeEEEeeeeeeccC
Q 041566 307 YKAGNLNSAMGCDYVKDYEFVAIFDAD--FQPTP-DFLKKTIPYFKG-----------------NDDLALVQTRWSFVNK 366 (687)
Q Consensus 307 gKa~aLn~gl~~~~~a~~d~V~~lDaD--~~~~p-d~L~~lv~~f~~-----------------~p~vg~Vqg~~~~~n~ 366 (687)
||..|.|+++- -.+||++-.+|+. ..++. =-++.++..|++ .+.+.+++.+......
T Consensus 275 GK~eNQNhaii---F~rGe~lQ~IDmNQDnYleE~lK~rnlL~Ef~~~~~~~~~~~~~~~~~~~~~~~aIlG~RE~IFs~ 351 (817)
T PF02364_consen 275 GKPENQNHAII---FTRGEYLQTIDMNQDNYLEEALKMRNLLEEFEEMHGDSSSPYIPGIEEEGKRPVAILGFREHIFSE 351 (817)
T ss_pred CCccccceeEE---EEccccccccccchhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCceEecccceEecC
Confidence 79999999987 5799999999995 34322 234566667763 1356777777665554
Q ss_pred CCChhHHhhh-hhhhhhHHHHHhhccccccccccccceEEEehhhhhhhCCCC----CCCccchHHHHHHHHHcCCeEEE
Q 041566 367 DENLLTRLQN-INLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECGGWL----DRTTVEDMDIAVRAHLCGWKFVY 441 (687)
Q Consensus 367 ~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~----~~~~~ED~~l~~rl~~~G~ri~~ 441 (687)
+-+.+..... -+..+. ...|..-+.-+.-. --|+-=++.+-....-||.. .-++.||..-++....+|-++.+
T Consensus 352 ~vg~L~~~aa~qE~~F~-Tl~qR~la~p~~rl-HYGHPD~~n~~f~~TRGGvSKAsk~lhLsEDIfaG~n~~lRGG~i~h 429 (817)
T PF02364_consen 352 NVGSLGDFAAGQEQSFG-TLFQRTLANPLVRL-HYGHPDVFNRIFMTTRGGVSKASKGLHLSEDIFAGMNATLRGGRIKH 429 (817)
T ss_pred CcchHHHHhhhhhHHHH-HHHHHHHhcchhhc-cCCCchhhhhhheeccCccchHhhcccccHHHHHHHHHHhcCCceee
Confidence 4433332221 111111 11111111000000 12333333333333346654 23568999999999999999998
Q ss_pred EcceEEeeccCcCHHHHHHHHHHhhcccHHHHH-HHhHHHhhcCCcHHHHHHHH
Q 041566 442 VNDVKCLCELPESYEAYKKQQHRWHSGPMQLFR-MCFIDIIRSKVSWAKKANLI 494 (687)
Q Consensus 442 ~~~a~~~~e~P~t~~~~~~Qr~RW~~G~~q~~~-~~~~~~l~~~l~~~~k~~~~ 494 (687)
+.-..|=---.-++.+-..=..+-+.|+-+... +-. .-+..++.+.+-+.++
T Consensus 430 ~ey~qcGKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~-yrLg~~ld~~R~LSfy 482 (817)
T PF02364_consen 430 CEYIQCGKGRDVGFNSILNFETKIASGMGEQMLSREY-YRLGTRLDFFRFLSFY 482 (817)
T ss_pred hhhhhcccccccCchhhhhhHhHhcCCccchhhhHHH-HHhhccCCHHHHHHHH
Confidence 876554322233344333334455666554332 221 1234466666655554
No 109
>KOG4179 consensus Lysyl hydrolase/glycosyltransferase family 25 [Posttranslational modification, protein turnover, chaperones]
Probab=86.96 E-value=1.3 Score=47.77 Aligned_cols=111 Identities=17% Similarity=0.079 Sum_probs=74.9
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEecc------CCCC
Q 041566 233 PMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRL------IRSG 306 (687)
Q Consensus 233 P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~------~~~g 306 (687)
|.|.+.+-..|-...+.--+..+-++|||+.+.-|.+-.|.+.|.+.++.++..+...+..-.|.++... ...|
T Consensus 3 ptvl~alL~rn~ah~lp~Flg~le~~Dypk~r~aiw~~~dh~~d~~ie~freWL~nv~~~y~~V~~e~~~e~~s~~d~~~ 82 (568)
T KOG4179|consen 3 PTVLCALLFRNFAHSLPLFLGELEEGDYPKIRPAIWIGVDHEHDHAIEYFREWLENVGDLYHRVKWEPFIEPKSYPDEHG 82 (568)
T ss_pred ceeehHHHHHHHHhhhhhccCChhccCCcccccceEEecCccccchHHHHHHHHHhcCCccceeEEEecCCccccCcccC
Confidence 4556656566666666666666678999999999999999998888888888777554444455544322 1122
Q ss_pred C--------------hHhHHHHHhcccccCCccEEEEEcCCCCC-CHHHHHHHHHH
Q 041566 307 Y--------------KAGNLNSAMGCDYVKDYEFVAIFDADFQP-TPDFLKKTIPY 347 (687)
Q Consensus 307 g--------------Ka~aLn~gl~~~~~a~~d~V~~lDaD~~~-~pd~L~~lv~~ 347 (687)
. |-.|+|.+-. .-.|||++.|.|+.+ .+|.|.-++..
T Consensus 83 pk~W~~sr~q~lm~lKeea~~~~r~----~~adyilf~d~d~lLts~dTl~llm~l 134 (568)
T KOG4179|consen 83 PKHWPDSRFQHLMSLKEEALNWARS----GWADYILFKDEDNLLTSGDTLPLLMNL 134 (568)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHh----hhcceeEEeehhheeeCCchHhHHHhc
Confidence 1 3334454432 356999999999988 66887766643
No 110
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=86.27 E-value=7.8 Score=37.15 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=57.2
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccC
Q 041566 243 NEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVK 322 (687)
Q Consensus 243 NE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a 322 (687)
+....++.+++.+.... .++ |+|+-+...+...+.+ ...++.++ ..+....|-..++..|++... .
T Consensus 24 ~g~~li~~~i~~l~~~~--~~~--i~vv~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~G~~~~i~~al~~~~-~ 89 (186)
T cd04182 24 DGKPLLRHALDAALAAG--LSR--VIVVLGAEADAVRAAL-------AGLPVVVV--INPDWEEGMSSSLAAGLEALP-A 89 (186)
T ss_pred CCeeHHHHHHHHHHhCC--CCc--EEEECCCcHHHHHHHh-------cCCCeEEE--eCCChhhCHHHHHHHHHHhcc-c
Confidence 44568888888887752 223 4444333222222111 12344332 223233457788888888421 1
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 323 DYEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 323 ~~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
+.|+++++++|+ .++++.+++++..+..
T Consensus 90 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 118 (186)
T cd04182 90 DADAVLILLADQPLVTAETLRALIDAFRE 118 (186)
T ss_pred cCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 479999999999 6799999999998874
No 111
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=85.36 E-value=8.8 Score=37.41 Aligned_cols=102 Identities=14% Similarity=0.066 Sum_probs=58.1
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccC
Q 041566 243 NEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVK 322 (687)
Q Consensus 243 NE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a 322 (687)
+....++.+++.+++.. .++ |+|+-....+......+... ...++.++.. +....|..+++..|+++....
T Consensus 24 ~g~~ll~~~i~~~~~~~--~~~--i~vv~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~G~~~si~~gl~~~~~~ 94 (190)
T TIGR03202 24 GETTLGSASLKTALSSR--LSK--VIVVIGEKYAHLSWLDPYLL---ADERIMLVCC--RDACEGQAHSLKCGLRKAEAM 94 (190)
T ss_pred CCccHHHHHHHHHHhCC--CCc--EEEEeCCccchhhhhhHhhh---cCCCeEEEEC--CChhhhHHHHHHHHHHHhccC
Confidence 45667888887766532 223 44554433322111111110 1234444332 221224667788888742223
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHHccCCC
Q 041566 323 DYEFVAIFDADF-QPTPDFLKKTIPYFKGNDD 353 (687)
Q Consensus 323 ~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~p~ 353 (687)
+.|+++++++|. .++++.+++++..+...++
T Consensus 95 ~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~ 126 (190)
T TIGR03202 95 GADAVVILLADQPFLTADVINALLALAKRRPD 126 (190)
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence 579999999999 6699999999998864343
No 112
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=85.07 E-value=3.2 Score=42.97 Aligned_cols=110 Identities=14% Similarity=0.067 Sum_probs=55.7
Q ss_pred cCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccccccccccc
Q 041566 321 VKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINFFGFN 400 (687)
Q Consensus 321 ~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (687)
..+.++.+++|+|+.+..+-|.+++..+..+.. ..-|.......... ..+... ... ......+.-.
T Consensus 84 ~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~--~yiG~~~~~~~~~~-~~~~~~-------~~~----~~~~~~f~~G 149 (252)
T PF02434_consen 84 NSDKDWFCFADDDTYVNVENLRRLLSKYDPSEP--IYIGRPSGDRPIEI-IHRFNP-------NKS----KDSGFWFATG 149 (252)
T ss_dssp HHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS----EEE-EE----------------------------------EE-G
T ss_pred cCCceEEEEEeCCceecHHHHHHHHhhCCCccC--EEeeeeccCcccee-eccccc-------ccc----CcCceEeeCC
Confidence 356799999999999999999999998864333 33333222111100 000000 000 0011122246
Q ss_pred cceEEEehhhhhhhC------CCCCC----CccchHHHHHHHHH-cCCeEEEEcc
Q 041566 401 GTAGVWRIKALEECG------GWLDR----TTVEDMDIAVRAHL-CGWKFVYVND 444 (687)
Q Consensus 401 G~~~~~Rr~aL~~iG------Gf~~~----~~~ED~~l~~rl~~-~G~ri~~~~~ 444 (687)
|++.++.|.+++++. .+... ...||+.++.-+.. .|.+....+.
T Consensus 150 GaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~ 204 (252)
T PF02434_consen 150 GAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPL 204 (252)
T ss_dssp GG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT
T ss_pred CeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechh
Confidence 789999999999872 22221 24799999999998 8988877654
No 113
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=84.60 E-value=39 Score=38.59 Aligned_cols=122 Identities=12% Similarity=0.189 Sum_probs=69.9
Q ss_pred CCCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhh-cCcEEEEEeccCCCCChH
Q 041566 231 DYPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQ-RGVHIIYRHRLIRSGYKA 309 (687)
Q Consensus 231 ~~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~-~~v~i~~~~r~~~~ggKa 309 (687)
..++|.|++=+|-++ .+++.++.+.+...+ +.++|.-+.. +..+.+++...+.+. ..+.|..+ .+.|.=.
T Consensus 263 ~~~kiav~lHv~Y~D-Ll~E~l~~l~~~p~~---~Dl~ITt~~~--~~~~~i~~~l~~~~~~~~~~v~vv---~NrGRDi 333 (498)
T PF05045_consen 263 SKKKIAVHLHVFYPD-LLEEILDYLANIPFP---YDLFITTDSE--EKKEEIEEILAKRPGFKNAEVRVV---ENRGRDI 333 (498)
T ss_pred CCCcEEEEEEEEcHh-hHHHHHHHHHhCCCC---eEEEEECCch--hhHHHHHHHHHhccCCCceEEEEe---CCCCccH
Confidence 356889988888765 556666666665433 5566654332 223445554433322 23444433 2334333
Q ss_pred hHHHHHhccc-ccCCccEEEEEcCCCCCC--------------------HHHHHHHHHHHccCCCeEEEeeee
Q 041566 310 GNLNSAMGCD-YVKDYEFVAIFDADFQPT--------------------PDFLKKTIPYFKGNDDLALVQTRW 361 (687)
Q Consensus 310 ~aLn~gl~~~-~~a~~d~V~~lDaD~~~~--------------------pd~L~~lv~~f~~~p~vg~Vqg~~ 361 (687)
+++=.+++.. ...++|+|+.+.+--.++ ++.+.+.+..|++||++|+|.++.
T Consensus 334 ~pfLv~~~~~l~~~~YD~v~~~HtKKS~~~~~~~g~~wr~~l~~~LL~s~~~v~~Il~~F~~~p~lGlv~P~~ 406 (498)
T PF05045_consen 334 LPFLVGLKDELLDSKYDYVCHLHTKKSPHNDRSDGDSWRRELLDNLLGSKEYVDNILSAFEDDPRLGLVIPDI 406 (498)
T ss_pred HHHHHHHHHHhccCCccEEEEEEcccCcCcCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCceEEeCCc
Confidence 4333222211 126788888887644333 345677788899899999999875
No 114
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=84.26 E-value=12 Score=36.15 Aligned_cols=97 Identities=8% Similarity=0.092 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccC
Q 041566 243 NEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVK 322 (687)
Q Consensus 243 NE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a 322 (687)
+....++.+++.+.+.. .+++ ++|+.+.. +. ..+.... ..++.++. ......|-.+++..|++. ..
T Consensus 23 ~g~pll~~~i~~l~~~~--~~~i-ivv~~~~~-~~---~~~~~~~---~~~v~~v~--~~~~~~g~~~si~~~l~~--~~ 88 (188)
T TIGR03310 23 KGKTILEHVVDNALRLF--FDEV-ILVLGHEA-DE---LVALLAN---HSNITLVH--NPQYAEGQSSSIKLGLEL--PV 88 (188)
T ss_pred CCeeHHHHHHHHHHHcC--CCcE-EEEeCCcH-HH---HHHHhcc---CCCeEEEE--CcChhcCHHHHHHHHhcC--CC
Confidence 34568888888887653 2233 33444322 22 1221111 23444432 222223466778888762 24
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHHccCCC
Q 041566 323 DYEFVAIFDADF-QPTPDFLKKTIPYFKGNDD 353 (687)
Q Consensus 323 ~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~p~ 353 (687)
+.|.++++++|. .++++.+++++..+..++.
T Consensus 89 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 120 (188)
T TIGR03310 89 QSDGYLFLLGDQPFVTPDIIQLLLEAFALKND 120 (188)
T ss_pred CCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCC
Confidence 578999999999 5699999999988765444
No 115
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=82.48 E-value=10 Score=35.53 Aligned_cols=102 Identities=11% Similarity=0.234 Sum_probs=65.3
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|. +....++.+++.+.+... ++ |+|+-.. +...+.+ ...+++++.. +....|-..++..|++.
T Consensus 19 ~~i-~g~~li~~~l~~l~~~~~--~~--Ivvv~~~--~~~~~~~-------~~~~~~~v~~--~~~~~G~~~sl~~a~~~ 82 (160)
T PF12804_consen 19 LPI-GGKPLIERVLEALREAGV--DD--IVVVTGE--EEIYEYL-------ERYGIKVVVD--PEPGQGPLASLLAALSQ 82 (160)
T ss_dssp SEE-TTEEHHHHHHHHHHHHTE--SE--EEEEEST--HHHHHHH-------TTTTSEEEE---STSSCSHHHHHHHHHHT
T ss_pred eeE-CCccHHHHHHHHhhccCC--ce--EEEecCh--HHHHHHH-------hccCceEEEe--ccccCChHHHHHHHHHh
Confidence 444 556788888888877642 23 4444443 3232222 2456666543 32245688899999983
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHHccC-CCeEEEe
Q 041566 319 DYVKDYEFVAIFDADF-QPTPDFLKKTIPYFKGN-DDLALVQ 358 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~-p~vg~Vq 358 (687)
..+.+.++++.+|. .++++.+++++..+.++ +++.++.
T Consensus 83 --~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 83 --LPSSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp --STTSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred --cccCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 22899999999999 56999999999999743 3444433
No 116
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=79.42 E-value=20 Score=35.84 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=58.5
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|.-+ ...++.+|+++.+.. -+++ +++-....+...+.+. ..++.++ .+.. ..|.++++..++..
T Consensus 21 ~~v~g-kpli~~~i~~l~~~~--i~~i--~iv~~~~~~~i~~~~~-------~~~~~~~--~~~~-~~g~~~ai~~a~~~ 85 (229)
T cd02540 21 HPLAG-KPMLEHVLDAARALG--PDRI--VVVVGHGAEQVKKALA-------NPNVEFV--LQEE-QLGTGHAVKQALPA 85 (229)
T ss_pred ceeCC-ccHHHHHHHHHHhCC--CCeE--EEEECCCHHHHHHHhC-------CCCcEEE--ECCC-CCCCHHHHHHHHHh
Confidence 34444 478889999988754 2233 3333222333332222 2344443 3333 34588888888873
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 319 DYVKDYEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
. ..+.|.++++++|. ..+++.+.+++..+..
T Consensus 86 ~-~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~ 117 (229)
T cd02540 86 L-KDFEGDVLVLYGDVPLITPETLQRLLEAHRE 117 (229)
T ss_pred h-ccCCCeEEEEeCCccccCHHHHHHHHHHHHh
Confidence 2 11268899999998 5688999999988864
No 117
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=78.97 E-value=11 Score=40.07 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=68.0
Q ss_pred CCeEEEEeecCCch--HHHHHHHHHHHcCCCCCCc--e-EEEEEcCCCChhHHHHHHHHHHHHhh---cC-cEEEEEecc
Q 041566 232 YPMVLVQIPMCNER--EVYGQSIAAVCIQDWPKER--M-LVQILDDSDDLDVQLLIKAEVLKWQQ---RG-VHIIYRHRL 302 (687)
Q Consensus 232 ~P~VsViIP~yNE~--~~l~~tL~Sl~~q~yP~~~--l-eViVvDD~s~d~t~~~l~~~~~~~~~---~~-v~i~~~~r~ 302 (687)
-++++|=||+-..+ ..+..||.|++..--|.++ + .|+.+-|.+.+......++...++++ .| +.++.....
T Consensus 51 ~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~~ 130 (297)
T PF04666_consen 51 GKKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPPPS 130 (297)
T ss_pred CCeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEecccc
Confidence 44699999997765 7899999999986666542 3 34445555544444444444333322 12 222211110
Q ss_pred --------CCC-C---------Ch-----HhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHcc
Q 041566 303 --------IRS-G---------YK-----AGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKG 350 (687)
Q Consensus 303 --------~~~-g---------gK-----a~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~ 350 (687)
.++ | .| +--|+++ ...++|.+.+.+|.+..|+|+.++......
T Consensus 131 ~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~-----~~~~~YyL~LEDDVia~~~f~~~i~~~v~~ 196 (297)
T PF04666_consen 131 YYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYC-----QNLGDYYLQLEDDVIAAPGFLSRIKRFVEA 196 (297)
T ss_pred cCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHH-----HhcCCeEEEecCCeEechhHHHHHHHHHHH
Confidence 000 0 01 0112332 246899999999999999999999888864
No 118
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=78.07 E-value=21 Score=35.61 Aligned_cols=96 Identities=9% Similarity=0.095 Sum_probs=58.2
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|..+. ..++..++++.+.... + |+|+-+...+...+.+.. ...++++.+.......-|-++++..++..
T Consensus 25 lpi~g~-~li~~~l~~l~~~gi~--~--i~iv~~~~~~~i~~~~~~-----~~~~~~i~~~~~~~~~~g~~~~l~~~~~~ 94 (221)
T cd06422 25 VPVAGK-PLIDHALDRLAAAGIR--R--IVVNTHHLADQIEAHLGD-----SRFGLRITISDEPDELLETGGGIKKALPL 94 (221)
T ss_pred eeECCE-EHHHHHHHHHHHCCCC--E--EEEEccCCHHHHHHHHhc-----ccCCceEEEecCCCcccccHHHHHHHHHh
Confidence 444455 7899999999887533 2 444544444444433332 12466776654331223467888888873
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHHH
Q 041566 319 DYVKDYEFVAIFDADFQPTPDFLKKTIPY 347 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~~~~pd~L~~lv~~ 347 (687)
-+.+.++++++|...+.+..+-+..+
T Consensus 95 ---~~~~~~lv~~~D~i~~~~~~~~~~~~ 120 (221)
T cd06422 95 ---LGDEPFLVVNGDILWDGDLAPLLLLH 120 (221)
T ss_pred ---cCCCCEEEEeCCeeeCCCHHHHHHHH
Confidence 23378899999998888765544433
No 119
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=77.41 E-value=35 Score=35.84 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=64.4
Q ss_pred eEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEecc---CC-----C
Q 041566 234 MVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRL---IR-----S 305 (687)
Q Consensus 234 ~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~---~~-----~ 305 (687)
+|+|+....|-...+..+|.|++.-. ...+.+.|++|+.+++..+.+.+..+ ..+.++....-. .. +
T Consensus 2 ~~~iv~~~~~y~~~~~~~i~Sil~n~--~~~~~fhii~d~~s~~~~~~l~~~~~---~~~~~i~f~~i~~~~~~~~~~~~ 76 (280)
T cd06431 2 HVAIVCAGYNASRDVVTLVKSVLFYR--RNPLHFHLITDEIARRILATLFQTWM---VPAVEVSFYNAEELKSRVSWIPN 76 (280)
T ss_pred EEEEEEccCCcHHHHHHHHHHHHHcC--CCCEEEEEEECCcCHHHHHHHHHhcc---ccCcEEEEEEhHHhhhhhccCcc
Confidence 46777777555588899999998753 33478888888776655544443322 334555444321 10 0
Q ss_pred CChHhH---HHHHhcccccCCccEEEEEcCCCCCCH--HHHHHHHHHHccCCCeEEEe
Q 041566 306 GYKAGN---LNSAMGCDYVKDYEFVAIFDADFQPTP--DFLKKTIPYFKGNDDLALVQ 358 (687)
Q Consensus 306 ggKa~a---Ln~gl~~~~~a~~d~V~~lDaD~~~~p--d~L~~lv~~f~~~p~vg~Vq 358 (687)
...... ....+......+.|-|+.+|+|.++.. .-|-++...+. +..+.++.
T Consensus 77 ~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~-~~~~~a~v 133 (280)
T cd06431 77 KHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFT-GQQVLGLV 133 (280)
T ss_pred cchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcC-CCcEEEEe
Confidence 111111 112222111236889999999998844 33333322233 23454544
No 120
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=77.01 E-value=18 Score=36.44 Aligned_cols=99 Identities=3% Similarity=0.069 Sum_probs=55.5
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccC
Q 041566 243 NEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVK 322 (687)
Q Consensus 243 NE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a 322 (687)
+....+..+++++.+...- +++ ++|+++...+ .+++.++++.....++..+ ....+ ....+..|++. ..
T Consensus 28 ~gkpll~~~i~~~~~~~~~-~~i-vVv~~~~~~~----~~~~~~~~~~~~~~~~~~v--~~g~~-r~~sv~~gl~~--~~ 96 (230)
T PRK13385 28 VGEPIFIHALRPFLADNRC-SKI-IIVTQAQERK----HVQDLMKQLNVADQRVEVV--KGGTE-RQESVAAGLDR--IG 96 (230)
T ss_pred CCeEHHHHHHHHHHcCCCC-CEE-EEEeChhhHH----HHHHHHHhcCcCCCceEEc--CCCch-HHHHHHHHHHh--cc
Confidence 4567888999988765322 232 3344332212 2222222221110112211 11122 34777888874 23
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHHccCC
Q 041566 323 DYEFVAIFDADF-QPTPDFLKKTIPYFKGND 352 (687)
Q Consensus 323 ~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~p 352 (687)
+.++++++|+|. .++++.+++++..+..+.
T Consensus 97 ~~d~vli~~~d~P~i~~~~i~~li~~~~~~~ 127 (230)
T PRK13385 97 NEDVILVHDGARPFLTQDIIDRLLEGVAKYG 127 (230)
T ss_pred CCCeEEEccCCCCCCCHHHHHHHHHHHhhCC
Confidence 468999999999 669999999999987533
No 121
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=76.77 E-value=27 Score=34.52 Aligned_cols=93 Identities=12% Similarity=0.090 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccCCc
Q 041566 245 REVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKDY 324 (687)
Q Consensus 245 ~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~~ 324 (687)
...+..+++.+.+... ++ |+|+-+...+...+.+.+. ...+.++.+.... ...|.++++..+++. .+.
T Consensus 29 ~pli~~~l~~l~~~g~--~~--v~vv~~~~~~~i~~~~~~~----~~~~~~~~~~~~~-~~~G~~~~l~~a~~~---~~~ 96 (223)
T cd06915 29 RPFLEYLLEYLARQGI--SR--IVLSVGYLAEQIEEYFGDG----YRGGIRIYYVIEP-EPLGTGGAIKNALPK---LPE 96 (223)
T ss_pred cchHHHHHHHHHHCCC--CE--EEEEcccCHHHHHHHHcCc----cccCceEEEEECC-CCCcchHHHHHHHhh---cCC
Confidence 3678888888887542 23 4455444444444333210 0124454444333 334577888888873 345
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHcc
Q 041566 325 EFVAIFDADFQPTPDFLKKTIPYFKG 350 (687)
Q Consensus 325 d~V~~lDaD~~~~pd~L~~lv~~f~~ 350 (687)
+.++++++|+..+++ +.+++..+.+
T Consensus 97 ~~~lv~~~D~~~~~~-~~~~l~~~~~ 121 (223)
T cd06915 97 DQFLVLNGDTYFDVD-LLALLAALRA 121 (223)
T ss_pred CCEEEEECCcccCCC-HHHHHHHHHh
Confidence 779999999977655 6677776653
No 122
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=76.73 E-value=22 Score=34.93 Aligned_cols=92 Identities=11% Similarity=0.100 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccCCc
Q 041566 245 REVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKDY 324 (687)
Q Consensus 245 ~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~~ 324 (687)
...+..+++++.+... ++ |+|+-+...+...+.+.+ ....+.++.+...... .|-++++..+++. .+.
T Consensus 29 ~pli~~~l~~l~~~g~--~~--i~vv~~~~~~~i~~~~~~----~~~~~~~i~~~~~~~~-~g~~~al~~~~~~---~~~ 96 (217)
T cd04181 29 KPILEYIIERLARAGI--DE--IILVVGYLGEQIEEYFGD----GSKFGVNIEYVVQEEP-LGTAGAVRNAEDF---LGD 96 (217)
T ss_pred eeHHHHHHHHHHHCCC--CE--EEEEeccCHHHHHHHHcC----hhhcCceEEEEeCCCC-CccHHHHHHhhhh---cCC
Confidence 4788999999888652 23 344443333333333321 1113455555543332 4478888888873 267
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHc
Q 041566 325 EFVAIFDADFQPTPDFLKKTIPYFK 349 (687)
Q Consensus 325 d~V~~lDaD~~~~pd~L~~lv~~f~ 349 (687)
+.++++++|...+.+. .+++....
T Consensus 97 ~~~lv~~~D~~~~~~~-~~~~~~~~ 120 (217)
T cd04181 97 DDFLVVNGDVLTDLDL-SELLRFHR 120 (217)
T ss_pred CCEEEEECCeecCcCH-HHHHHHHH
Confidence 8899999999887764 44555444
No 123
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=74.88 E-value=35 Score=33.78 Aligned_cols=96 Identities=11% Similarity=0.176 Sum_probs=54.8
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEecc---CCCCChHhHHHHHhccc
Q 041566 243 NEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRL---IRSGYKAGNLNSAMGCD 319 (687)
Q Consensus 243 NE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~---~~~ggKa~aLn~gl~~~ 319 (687)
+....++.+++.+.+..... + |+|+.| ++...+.++ +.++.+.+...+ ....+..+.+..+++..
T Consensus 24 ~Gkpll~~~l~~l~~~~~~~-~--IvV~~~--~~~i~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l 91 (223)
T cd02513 24 GGKPLIAWTIEAALESKLFD-R--VVVSTD--DEEIAEVAR-------KYGAEVPFLRPAELATDTASSIDVILHALDQL 91 (223)
T ss_pred CCccHHHHHHHHHHhCCCCC-E--EEEECC--cHHHHHHHH-------HhCCCceeeCChHHCCCCCCcHHHHHHHHHHH
Confidence 34567888898888654222 2 445432 233333322 234322222111 11224556677776521
Q ss_pred cc--CCccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 320 YV--KDYEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 320 ~~--a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
.. .+.|.++++++|. ..+++.+++++..+..
T Consensus 92 ~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~ 125 (223)
T cd02513 92 EELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLS 125 (223)
T ss_pred HHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHh
Confidence 01 1358999999999 5699999999998875
No 124
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=74.00 E-value=1.2e+02 Score=35.73 Aligned_cols=192 Identities=12% Similarity=-0.001 Sum_probs=96.3
Q ss_pred CeEEEEeecCCch----HHHHHHHHHHHcCCCCCCce-EEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCC
Q 041566 233 PMVLVQIPMCNER----EVYGQSIAAVCIQDWPKERM-LVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGY 307 (687)
Q Consensus 233 P~VsViIP~yNE~----~~l~~tL~Sl~~q~yP~~~l-eViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~gg 307 (687)
+.+.|+|.+.-.. +.|++|-..-... ....+ .++++--+.++.+.+.++++.+.+.+- +..-+...-.+.--
T Consensus 385 ~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~--~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDI-Iq~dF~DsY~NLTl 461 (636)
T PLN03133 385 LDLFIGVFSTANNFKRRMAVRRTWMQYDAV--RSGAVAVRFFVGLHKNQMVNEELWNEARTYGDI-QLMPFVDYYSLITW 461 (636)
T ss_pred eEEEEEEeCCcccHHHHHHHHHhhcccccc--CCCceEEEEEEecCCcHHHHHHHHHHHHHcCCe-EEEeeechhhhhHH
Confidence 3566666654332 5666665542111 11112 234553334455556666666554321 11112222222223
Q ss_pred hHhH-HHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeee-----ccCCCChhHHhhhhhhhh
Q 041566 308 KAGN-LNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSF-----VNKDENLLTRLQNINLSF 381 (687)
Q Consensus 308 Ka~a-Ln~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~-----~n~~~~~~~r~~~~~~~~ 381 (687)
|.-. +..+.. ..+.+||+-.|+|+.+..+-|.+.+.... +.-++..|.... .+....|.-
T Consensus 462 Ktl~~~~wa~~---c~~akFilK~DDDvFVnv~~Ll~~L~~~~--~~~~Ly~G~v~~~~~PiRd~~sKWYV--------- 527 (636)
T PLN03133 462 KTLAICIFGTE---VVSAKYVMKTDDDAFVRVDEVLASLKRTN--VSHGLLYGLINSDSQPHRNPDSKWYI--------- 527 (636)
T ss_pred HHHHHHHHHHh---CCCceEEEEcCCceEEcHHHHHHHHHhcC--CCCceEEEEeccCCCcccCCCCCCCC---------
Confidence 4432 233333 45789999999999998887766664332 222244443321 111111110
Q ss_pred hHHHHHhhccccccccccccceEEEehhhhhhhC-----CCCCCCccchHHHHHHHHH---cCCeEEEEcce
Q 041566 382 HFEVEQQVNGVFINFFGFNGTAGVWRIKALEECG-----GWLDRTTVEDMDIAVRAHL---CGWKFVYVNDV 445 (687)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iG-----Gf~~~~~~ED~~l~~rl~~---~G~ri~~~~~a 445 (687)
..+......+- ..+.|.+.++.+++.+.+- ..-.....||..++..+.. .|.++.+..+.
T Consensus 528 --s~~eyp~~~YP--pYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~ 595 (636)
T PLN03133 528 --SPEEWPEETYP--PWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDG 595 (636)
T ss_pred --CHHHCCCCCCC--CCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCC
Confidence 01111112111 1268999999999988762 1122233799999998763 46666666543
No 125
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=72.87 E-value=30 Score=35.37 Aligned_cols=114 Identities=12% Similarity=-0.001 Sum_probs=60.1
Q ss_pred EEeecCCch--HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccC-CCC-------
Q 041566 237 VQIPMCNER--EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLI-RSG------- 306 (687)
Q Consensus 237 ViIP~yNE~--~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~-~~g------- 306 (687)
|++.+-+.. ..+.-++.|++...-. .+.++|++|+-+++.++.+++..+. .+..+....... ...
T Consensus 3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~~L~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~ 77 (246)
T cd00505 3 IVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKAALDNLRKL---YNFNYELIPVDILDSVDSEHLKR 77 (246)
T ss_pred EEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHHHHHHHHhc---cCceEEEEeccccCcchhhhhcC
Confidence 445555533 7788899999875422 4778888888777676666654432 233333322211 100
Q ss_pred --ChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEE
Q 041566 307 --YKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALV 357 (687)
Q Consensus 307 --gKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~V 357 (687)
.+..-....+- ....+.|-|+.+|+|+++-. -+.++...-.++..+|+|
T Consensus 78 ~~~~~~y~RL~i~-~llp~~~kvlYLD~D~iv~~-di~~L~~~~l~~~~~aav 128 (246)
T cd00505 78 PIKIVTLTKLHLP-NLVPDYDKILYVDADILVLT-DIDELWDTPLGGQELAAA 128 (246)
T ss_pred ccccceeHHHHHH-HHhhccCeEEEEcCCeeecc-CHHHHhhccCCCCeEEEc
Confidence 01100111111 11225889999999998864 344444432233444444
No 126
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=70.97 E-value=38 Score=34.11 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=55.0
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccC
Q 041566 243 NEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVK 322 (687)
Q Consensus 243 NE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a 322 (687)
+....++.+++.+.+..-. ++ |+|+-+ .+... +.+. +.++++++.... ..+|.++ +..+++. ...
T Consensus 24 ~gkpll~~~l~~l~~~~~i-~~--ivvv~~--~~~i~----~~~~---~~~~~~~~~~~~-~~~gt~~-~~~~~~~-~~~ 88 (239)
T cd02517 24 AGKPMIQHVYERAKKAKGL-DE--VVVATD--DERIA----DAVE---SFGGKVVMTSPD-HPSGTDR-IAEVAEK-LDA 88 (239)
T ss_pred CCcCHHHHHHHHHHhCCCC-CE--EEEECC--cHHHH----HHHH---HcCCEEEEcCcc-cCchhHH-HHHHHHh-cCC
Confidence 3456888888888775211 23 444432 23222 2222 345666654322 2333444 4444442 111
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHHccCCCe
Q 041566 323 DYEFVAIFDADF-QPTPDFLKKTIPYFKGNDDL 354 (687)
Q Consensus 323 ~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~p~v 354 (687)
+.|.++++++|. ..+++.+++++..+..+++.
T Consensus 89 ~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~ 121 (239)
T cd02517 89 DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGV 121 (239)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 248899999999 78999999999988654333
No 127
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=70.72 E-value=31 Score=36.05 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=18.2
Q ss_pred cCCccEEEEEcCCCCC--CHHHHHH
Q 041566 321 VKDYEFVAIFDADFQP--TPDFLKK 343 (687)
Q Consensus 321 ~a~~d~V~~lDaD~~~--~pd~L~~ 343 (687)
.+..|=|+++|||+++ +|+.+-+
T Consensus 88 ~ssFeevllLDaD~vpl~~p~~lF~ 112 (271)
T PF11051_consen 88 FSSFEEVLLLDADNVPLVDPEKLFE 112 (271)
T ss_pred hCCcceEEEEcCCcccccCHHHHhc
Confidence 4688999999999987 6765544
No 128
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=70.52 E-value=41 Score=32.17 Aligned_cols=85 Identities=13% Similarity=0.159 Sum_probs=54.5
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccC
Q 041566 243 NEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVK 322 (687)
Q Consensus 243 NE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a 322 (687)
+....++.+++.+.+. .++ |+|+-+...+. .. ..+++++. .+....|-.+++..|++ ..
T Consensus 24 ~g~~ll~~~i~~l~~~---~~~--iivv~~~~~~~----~~-------~~~~~~v~--~~~~~~G~~~si~~~l~---~~ 82 (181)
T cd02503 24 GGKPLLEHVLERLKPL---VDE--VVISANRDQER----YA-------LLGVPVIP--DEPPGKGPLAGILAALR---AA 82 (181)
T ss_pred CCEEHHHHHHHHHHhh---cCE--EEEECCCChHH----Hh-------hcCCcEee--CCCCCCCCHHHHHHHHH---hc
Confidence 3456777888877654 223 44554333222 11 23455442 22223457788999998 34
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHH
Q 041566 323 DYEFVAIFDADF-QPTPDFLKKTIPYF 348 (687)
Q Consensus 323 ~~d~V~~lDaD~-~~~pd~L~~lv~~f 348 (687)
+.+.++++++|. .++++.+++++..+
T Consensus 83 ~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 83 PADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 579999999999 56999999999887
No 129
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=70.43 E-value=8.2 Score=41.07 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=25.2
Q ss_pred HHHHhcccccCCccEEEEEcCCCCCCHH-------HHHHHHHHHc
Q 041566 312 LNSAMGCDYVKDYEFVAIFDADFQPTPD-------FLKKTIPYFK 349 (687)
Q Consensus 312 Ln~gl~~~~~a~~d~V~~lDaD~~~~pd-------~L~~lv~~f~ 349 (687)
.+.|+- .++.+|++.+|+|+.|..| ++.+-+.-+.
T Consensus 85 R~fGyL---~s~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~NL~ 126 (346)
T PLN03180 85 RCFGYL---VSKKKYIFTIDDDCFVAKDPSGKLINALEQHIKNLL 126 (346)
T ss_pred hhhhhe---eecceEEEEECCCCCCCCCCccccccHHHHHHHhcC
Confidence 345554 5679999999999999666 6776555443
No 130
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=70.43 E-value=6.4 Score=36.46 Aligned_cols=76 Identities=16% Similarity=0.193 Sum_probs=45.4
Q ss_pred CeEEEEeecCCchHHHHHHHHHHH----cCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCCh
Q 041566 233 PMVLVQIPMCNEREVYGQSIAAVC----IQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYK 308 (687)
Q Consensus 233 P~VsViIP~yNE~~~l~~tL~Sl~----~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggK 308 (687)
-+|.|+||-+|.++.+...+..+. +|.- .+.|+|++-.++.. =.|
T Consensus 47 ~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~~---~y~I~vieQ~~~~~----------------------------FNR 95 (136)
T PF13733_consen 47 HKVAIIIPYRDREEHLRIFLPHLHPFLQRQQL---DYRIFVIEQVDNGP----------------------------FNR 95 (136)
T ss_dssp -EEEEEEEESS-HHHHHHHHHHHHHHHHHTT----EEEEEEEEE-SSS-------------------------------H
T ss_pred cceEEEEEeCCHHHHHHHHHHHHHHHHhhCcc---eEEEEEEeeccCCC----------------------------Cch
Confidence 389999999999877766666542 3432 46677776543221 115
Q ss_pred HhHHHHHhcccc-cCCccEEEEEcCCCCCCHH
Q 041566 309 AGNLNSAMGCDY-VKDYEFVAIFDADFQPTPD 339 (687)
Q Consensus 309 a~aLn~gl~~~~-~a~~d~V~~lDaD~~~~pd 339 (687)
+.-+|.|+..+. ..+.|.+++-|.|..|..+
T Consensus 96 g~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 96 GKLMNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp HHHHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred hhhhhHHHHHHhhccCCCEEEEecccccccCC
Confidence 556676665431 2368999999999988653
No 131
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=70.01 E-value=37 Score=37.95 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=58.2
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|.-+ ...++.+++.+.+... +++ +|+-....+...+.+. +.+..+.+..... ..|-++++..+++.
T Consensus 28 l~v~g-kpli~~~l~~l~~~gi--~~i--vvv~~~~~~~i~~~~~-------~~~~~~~~~~~~~-~~G~~~sl~~a~~~ 94 (446)
T PRK14353 28 HPVAG-RPMLAHVLAAAASLGP--SRV--AVVVGPGAEAVAAAAA-------KIAPDAEIFVQKE-RLGTAHAVLAAREA 94 (446)
T ss_pred CEECC-chHHHHHHHHHHhCCC--CcE--EEEECCCHHHHHHHhh-------ccCCCceEEEcCC-CCCcHHHHHHHHHH
Confidence 44444 4788999999887642 233 3333333333333222 1222222222222 23467777777653
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHHccCCCeEE
Q 041566 319 DYVKDYEFVAIFDADF-QPTPDFLKKTIPYFKGNDDLAL 356 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~p~vg~ 356 (687)
. ..+.|.++++++|. ..+++.+++++.....+.++..
T Consensus 95 l-~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~~i 132 (446)
T PRK14353 95 L-AGGYGDVLVLYGDTPLITAETLARLRERLADGADVVV 132 (446)
T ss_pred H-hccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcEEE
Confidence 1 11246688899998 7799999999987654344433
No 132
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=69.95 E-value=39 Score=37.74 Aligned_cols=103 Identities=12% Similarity=0.142 Sum_probs=61.4
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|..+. ..++.+++++.+.... ++ +++-....+...+.+. +.++++. .... ..|-++++..++..
T Consensus 23 ~~i~gk-pli~~~l~~l~~~g~~--~i--iiv~~~~~~~i~~~~~-------~~~i~~~--~~~~-~~G~~~ai~~a~~~ 87 (451)
T TIGR01173 23 HPLAGK-PMLEHVIDAARALGPQ--KI--HVVYGHGAEQVRKALA-------NRDVNWV--LQAE-QLGTGHAVLQALPF 87 (451)
T ss_pred ceeCCc-cHHHHHHHHHHhCCCC--eE--EEEECCCHHHHHHHhc-------CCCcEEE--EcCC-CCchHHHHHHHHHh
Confidence 444443 7888899998876532 33 3333322333333222 2344443 2222 23477788888773
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHHccCCCeEEEee
Q 041566 319 DYVKDYEFVAIFDADF-QPTPDFLKKTIPYFKGNDDLALVQT 359 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~p~vg~Vqg 359 (687)
..+.|.++++++|+ ..+++.+++++..+.+ .+..++..
T Consensus 88 --l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~-~~~~~~~~ 126 (451)
T TIGR01173 88 --LPDDGDVLVLYGDVPLISAETLERLLEAHRQ-NGITLLTA 126 (451)
T ss_pred --cCCCCcEEEEECCcCCcCHHHHHHHHHHHhh-CCEEEEEE
Confidence 23447899999998 6789999999988864 34444443
No 133
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=69.16 E-value=49 Score=33.33 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccCC
Q 041566 244 EREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKD 323 (687)
Q Consensus 244 E~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~ 323 (687)
....++.+++++.+...- ++ |+|+-| ++.+.+.++ +.++++++.. +...++.++ +..+++ ..+
T Consensus 26 GkPli~~~i~~l~~~~~~-~~--ivv~t~--~~~i~~~~~-------~~~~~v~~~~-~~~~~g~~~-~~~a~~---~~~ 88 (238)
T PRK13368 26 GKPMIQHVYERAAQAAGV-EE--VYVATD--DQRIEDAVE-------AFGGKVVMTS-DDHLSGTDR-LAEVML---KIE 88 (238)
T ss_pred CcCHHHHHHHHHHhcCCC-Ce--EEEECC--hHHHHHHHH-------HcCCeEEecC-ccCCCccHH-HHHHHH---hCC
Confidence 345788888888875222 23 444433 233333332 3466665443 222344443 444555 225
Q ss_pred ccEEEEEcCCC-CCCHHHHHHHHHHHccCC
Q 041566 324 YEFVAIFDADF-QPTPDFLKKTIPYFKGND 352 (687)
Q Consensus 324 ~d~V~~lDaD~-~~~pd~L~~lv~~f~~~p 352 (687)
.|.++++++|. ...++.+.+++..+..++
T Consensus 89 ~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~ 118 (238)
T PRK13368 89 ADIYINVQGDEPMIRPRDIDTLIQPMLDDP 118 (238)
T ss_pred CCEEEEEcCCcCcCCHHHHHHHHHHHHHCC
Confidence 68999999998 678999999999886444
No 134
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=68.35 E-value=40 Score=32.80 Aligned_cols=88 Identities=13% Similarity=0.109 Sum_probs=54.0
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccC
Q 041566 243 NEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVK 322 (687)
Q Consensus 243 NE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a 322 (687)
+....++.+++.+.. . -++ |+|+-+... +... ..++.++.. ......|-.+++..|++ ..
T Consensus 28 ~g~~ll~~~i~~l~~-~--~~~--i~vv~~~~~----~~~~-------~~~~~~v~~-~~~~~~g~~~~i~~~l~---~~ 87 (193)
T PRK00317 28 NGKPLIQHVIERLAP-Q--VDE--IVINANRNL----ARYA-------AFGLPVIPD-SLADFPGPLAGILAGLK---QA 87 (193)
T ss_pred CCEEHHHHHHHHHhh-h--CCE--EEEECCCCh----HHHH-------hcCCcEEeC-CCCCCCCCHHHHHHHHH---hc
Confidence 456788888888762 1 122 445433211 1111 234444321 11112345677888887 45
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 323 DYEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 323 ~~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
+.|+++++++|. .++++.+++++..+.+
T Consensus 88 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 88 RTEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred CCCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 679999999999 6699999999998764
No 135
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=67.78 E-value=41 Score=33.30 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=56.6
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccC
Q 041566 243 NEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVK 322 (687)
Q Consensus 243 NE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a 322 (687)
+....++.+++++.+..... + |+|+-+....... +.. .+. .....+.... +.. +...++..|++.....
T Consensus 26 ~Gkpll~~~i~~l~~~~~~~-~--ivVv~~~~~~~~~---~~~-~~~-~~~~~~~~~~--~~~-~~~~si~~al~~~~~~ 94 (218)
T cd02516 26 GGKPVLEHTLEAFLAHPAID-E--IVVVVPPDDIDLA---KEL-AKY-GLSKVVKIVE--GGA-TRQDSVLNGLKALPDA 94 (218)
T ss_pred CCeEHHHHHHHHHhcCCCCC-E--EEEEeChhHHHHH---HHH-Hhc-ccCCCeEEEC--Cch-HHHHHHHHHHHhcccC
Confidence 44578889999988754222 3 4444332222221 111 111 1111222221 112 3577788888742113
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHHccCC
Q 041566 323 DYEFVAIFDADF-QPTPDFLKKTIPYFKGND 352 (687)
Q Consensus 323 ~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~p 352 (687)
+.+.++++++|. .++++.+++++..+..+.
T Consensus 95 ~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~ 125 (218)
T cd02516 95 DPDIVLIHDAARPFVSPELIDRLIDALKEYG 125 (218)
T ss_pred CCCEEEEccCcCCCCCHHHHHHHHHHHhhCC
Confidence 678999999998 569999999999887543
No 136
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=67.35 E-value=68 Score=32.42 Aligned_cols=93 Identities=11% Similarity=0.060 Sum_probs=53.6
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccC
Q 041566 243 NEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVK 322 (687)
Q Consensus 243 NE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a 322 (687)
+....++.+++.+.+.. -++ |+|+-+ .+...+.+ . ..++++++.... ..+|..+.. .++......
T Consensus 25 ~Gkpll~~~l~~l~~~~--i~~--ivvv~~--~~~i~~~~----~---~~~~~v~~~~~~-~~~gt~~~~-~~~~~~~~~ 89 (245)
T PRK05450 25 GGKPMIVRVYERASKAG--ADR--VVVATD--DERIADAV----E---AFGGEVVMTSPD-HPSGTDRIA-EAAAKLGLA 89 (245)
T ss_pred CCcCHHHHHHHHHHhcC--CCe--EEEECC--cHHHHHHH----H---HcCCEEEECCCc-CCCchHHHH-HHHHhcCCC
Confidence 34568888888887752 223 444443 23333222 2 345666554222 233344332 233211023
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 323 DYEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 323 ~~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
+.+.++++++|. .++++.+++++..+..
T Consensus 90 ~~~~vlv~~~D~Pli~~~~l~~li~~~~~ 118 (245)
T PRK05450 90 DDDIVVNVQGDEPLIPPEIIDQVAEPLAN 118 (245)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHhc
Confidence 568899999999 7899999999998764
No 137
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=66.45 E-value=1.3e+02 Score=32.62 Aligned_cols=200 Identities=14% Similarity=0.035 Sum_probs=103.0
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHH-cCCC-CCCceEEE-EEcCCCCh-hHHHHHHHHHHHHhhcCcEEEEEeccCCCCC
Q 041566 232 YPMVLVQIPMCNEREVYGQSIAAVC-IQDW-PKERMLVQ-ILDDSDDL-DVQLLIKAEVLKWQQRGVHIIYRHRLIRSGY 307 (687)
Q Consensus 232 ~P~VsViIP~yNE~~~l~~tL~Sl~-~q~y-P~~~leVi-VvDD~s~d-~t~~~l~~~~~~~~~~~v~i~~~~r~~~~gg 307 (687)
.|.+.++|.+.-+.-.-++.|+.-= ++.. .+.++.+. ++--.+.+ .....+.++.+.+.+ =+..-+...-.+.-.
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygD-Ii~~df~Dty~nltl 172 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGD-IIQVDFEDTYFNLTL 172 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCC-EEEEecccchhchHH
Confidence 3568888887766533333333211 1221 12234333 33333322 234445554443321 011222222233344
Q ss_pred hHhH-HHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeec-cCCCChhHHhhhhhhhhhHHH
Q 041566 308 KAGN-LNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFV-NKDENLLTRLQNINLSFHFEV 385 (687)
Q Consensus 308 Ka~a-Ln~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~-n~~~~~~~r~~~~~~~~~~~~ 385 (687)
|.-+ +..+-.+ ..+.+||+-+|+|+.+.++-|.+.+..-. +|.-....|+.... .+..+-..++. ..
T Consensus 173 Ktl~~l~w~~~~--cp~akfi~K~DDDvfv~~~~L~~~L~~~~-~~~~~~~~G~v~~~~~p~R~~~~Kwy--------Vp 241 (349)
T KOG2287|consen 173 KTLAILLWGVSK--CPDAKFILKIDDDVFVNPDNLLEYLDKLN-DPSSDLYYGRVIQNAPPIRDKTSKWY--------VP 241 (349)
T ss_pred HHHHHHHHHHhc--CCcceEEEeccCceEEcHHHHHHHHhccC-CCCcceEEEeecccCCCCCCCCCCCc--------cC
Confidence 5443 3444432 45789999999999999988877776664 46556666654332 11111111111 11
Q ss_pred HHhhccccccccccccceEEEehhhhhhhC---CCCCCCccchHHHHHHHHHc-CCeEEEEcc
Q 041566 386 EQQVNGVFINFFGFNGTAGVWRIKALEECG---GWLDRTTVEDMDIAVRAHLC-GWKFVYVND 444 (687)
Q Consensus 386 ~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iG---Gf~~~~~~ED~~l~~rl~~~-G~ri~~~~~ 444 (687)
+....... -...++|.+.++.+++.+.+- +.......||..++.-+.+. |.+-...+.
T Consensus 242 ~~~y~~~~-YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~ 303 (349)
T KOG2287|consen 242 ESEYPCSV-YPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPG 303 (349)
T ss_pred HHHCCCCC-CCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcc
Confidence 11111111 112268999999999887652 22233347999999999998 766554443
No 138
>PLN03153 hypothetical protein; Provisional
Probab=66.04 E-value=18 Score=40.95 Aligned_cols=100 Identities=14% Similarity=0.074 Sum_probs=61.9
Q ss_pred cCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHHHHhhccccccccccc
Q 041566 321 VKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINFFGFN 400 (687)
Q Consensus 321 ~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (687)
..+.++.+++|+|+.+..+-|.+.+..+..+ +--+++....... ++.. +...+.+.
T Consensus 208 ~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDpt-kp~YIGs~Se~~~---------qn~~--------------f~~~fA~G 263 (537)
T PLN03153 208 LPDVRWFVLGDDDTIFNADNLVAVLSKYDPS-EMVYVGGPSESHS---------ANSY--------------FSHNMAFG 263 (537)
T ss_pred CCCCCEEEEecCCccccHHHHHHHHhhcCCC-CCEEecccccccc---------cccc--------------cccccccC
Confidence 4688999999999999888888888777642 2223333321111 0000 00112357
Q ss_pred cceEEEehhhhhhhCCCC-------CCCccchHHHHHHHHHcCCeEEEEcc
Q 041566 401 GTAGVWRIKALEECGGWL-------DRTTVEDMDIAVRAHLCGWKFVYVND 444 (687)
Q Consensus 401 G~~~~~Rr~aL~~iGGf~-------~~~~~ED~~l~~rl~~~G~ri~~~~~ 444 (687)
|++.++.+.+++.+.... +...++|..++.-+...|-+....+.
T Consensus 264 GAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~g 314 (537)
T PLN03153 264 GGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPG 314 (537)
T ss_pred CceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCC
Confidence 889999996666542221 12356888999999988877666554
No 139
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=65.62 E-value=71 Score=32.09 Aligned_cols=91 Identities=12% Similarity=0.149 Sum_probs=52.1
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCC--hhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccc
Q 041566 243 NEREVYGQSIAAVCIQDWPKERMLVQILDDSDD--LDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDY 320 (687)
Q Consensus 243 NE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~--d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~ 320 (687)
+....++.+++.+.+..... + |+|+-+... +...+.+. ..++.++. .+. .+.-. ....+++
T Consensus 22 ~Gkpli~~~i~~l~~~~~~~-~--ivVv~~~~~~~~~i~~~~~-------~~~v~~v~--~~~-~~~l~-~~~~~~~--- 84 (233)
T cd02518 22 GGKPLLEHLLDRLKRSKLID-E--IVIATSTNEEDDPLEALAK-------KLGVKVFR--GSE-EDVLG-RYYQAAE--- 84 (233)
T ss_pred CCccHHHHHHHHHHhCCCCC-e--EEEECCCCcccHHHHHHHH-------HcCCeEEE--CCc-hhHHH-HHHHHHH---
Confidence 34567888998888754222 3 444544332 33332221 24555442 221 12111 2222333
Q ss_pred cCCccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 321 VKDYEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 321 ~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
..+.|+++++++|+ .++++.+++++..+..
T Consensus 85 ~~~~d~vli~~~D~P~i~~~~i~~li~~~~~ 115 (233)
T cd02518 85 EYNADVVVRITGDCPLIDPEIIDAVIRLFLK 115 (233)
T ss_pred HcCCCEEEEeCCCCCCCCHHHHHHHHHHHHh
Confidence 24678999999999 6699999999998864
No 140
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=65.38 E-value=1.3e+02 Score=30.46 Aligned_cols=179 Identities=13% Similarity=0.122 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccCCcc
Q 041566 246 EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKDYE 325 (687)
Q Consensus 246 ~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~~d 325 (687)
..+..+.+.+.+.. .++ |+|.-| ++...+.++ ..|..++.-.....+| ..-+..+.+.....+.+
T Consensus 29 pmI~rV~e~a~~s~--~~r--vvVATD--de~I~~av~-------~~G~~avmT~~~h~SG--TdR~~Ev~~~l~~~~~~ 93 (247)
T COG1212 29 PMIVRVAERALKSG--ADR--VVVATD--DERIAEAVQ-------AFGGEAVMTSKDHQSG--TDRLAEVVEKLGLPDDE 93 (247)
T ss_pred hHHHHHHHHHHHcC--CCe--EEEEcC--CHHHHHHHH-------HhCCEEEecCCCCCCc--cHHHHHHHHhcCCCcce
Confidence 34666666666542 334 444443 344444444 3566655433333333 23344555433245789
Q ss_pred EEEEEcCCC-CCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCC----ChhHHhhhh-hhhhhHHHHHh-hc-ccccccc
Q 041566 326 FVAIFDADF-QPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDE----NLLTRLQNI-NLSFHFEVEQQ-VN-GVFINFF 397 (687)
Q Consensus 326 ~V~~lDaD~-~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~----~~~~r~~~~-~~~~~~~~~~~-~~-~~~~~~~ 397 (687)
+|+.+-+|. ..+|..+..++..+++ .++++++......+..+ |...-...- .++..|..... .. ...+ ..
T Consensus 94 iIVNvQGDeP~i~p~~I~~~~~~L~~-~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~~~-~~ 171 (247)
T COG1212 94 IIVNVQGDEPFIEPEVIRAVAENLEN-SNADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDNFG-GT 171 (247)
T ss_pred EEEEccCCCCCCCHHHHHHHHHHHHh-CCcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccccC-Cc
Confidence 999999998 6699999999999996 47777776544433221 110000000 11111111000 00 0000 01
Q ss_pred ccccc--eEEEehhhhhhhCCCCCCCccchHHH--HHHHHHcCCeEEEE
Q 041566 398 GFNGT--AGVWRIKALEECGGWLDRTTVEDMDI--AVRAHLCGWKFVYV 442 (687)
Q Consensus 398 ~~~G~--~~~~Rr~aL~~iGGf~~~~~~ED~~l--~~rl~~~G~ri~~~ 442 (687)
++-++ -..||+.+|++...|.+. .-|+.+- -+|+..+|.|+...
T Consensus 172 p~l~HIGIYayr~~~L~~f~~~~ps-~LE~~E~LEQLR~Le~G~kI~v~ 219 (247)
T COG1212 172 PFLRHIGIYAYRAGFLERFVALKPS-PLEKIESLEQLRVLENGEKIHVE 219 (247)
T ss_pred chhheeehHHhHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHcCCeeEEE
Confidence 11122 256799999998888664 4444432 47888899998754
No 141
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=65.31 E-value=1.2e+02 Score=32.40 Aligned_cols=120 Identities=9% Similarity=-0.015 Sum_probs=60.4
Q ss_pred eEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCC-CChhHHHHHHHHHHHHhhcCc--EEEEEeccCCC--C--
Q 041566 234 MVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDS-DDLDVQLLIKAEVLKWQQRGV--HIIYRHRLIRS--G-- 306 (687)
Q Consensus 234 ~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~-s~d~t~~~l~~~~~~~~~~~v--~i~~~~r~~~~--g-- 306 (687)
+|+|+.+-.+ .+.+..+|.|++.... ..+++.|+.|. .++...+.+++....+ ...+ ++..+.-+..+ +
T Consensus 2 ~~~vv~~g~~-~~~~~~~lkSil~~n~--~~l~Fhi~~d~~~~~~~~~~l~~~~~~~-~~~i~~~i~~I~~P~~~~~~ws 77 (304)
T cd06430 2 HLAVVACGER-LEETLTMLKSAIVFSQ--KPLRFHIFAEDQLKQSFKEKLDDWPELI-DRKFNYTLHPITFPSGNAAEWK 77 (304)
T ss_pred EEEEEEcCCc-HHHHHHHHHHHHHhCC--CCEEEEEEECCccCHHHHHHHHHHHHhc-cceeeeEEEEEecCccchhhhh
Confidence 3556555555 4777888999876542 24656555554 6776666666543221 1112 33222212111 1
Q ss_pred --Ch-HhHHHHHhcccccCCccEEEEEcCCCCCCH--HHHHHHHHHHccCCCeEEEee
Q 041566 307 --YK-AGNLNSAMGCDYVKDYEFVAIFDADFQPTP--DFLKKTIPYFKGNDDLALVQT 359 (687)
Q Consensus 307 --gK-a~aLn~gl~~~~~a~~d~V~~lDaD~~~~p--d~L~~lv~~f~~~p~vg~Vqg 359 (687)
.| +.-....+. ....+-|-|+.+|+|+++.. +-|-++...|. +..++++..
T Consensus 78 ~l~~~~~y~RL~ip-~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~-~~~~aA~v~ 133 (304)
T cd06430 78 KLFKPCAAQRLFLP-SLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFN-STQLAAMAP 133 (304)
T ss_pred hcccHHHHHHHHHH-HHhhhhceEEEeccceeecCCHHHHHHHHhhcC-CCeEEEEEe
Confidence 11 111111121 12236789999999998743 44444433443 244555543
No 142
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=64.95 E-value=71 Score=36.25 Aligned_cols=100 Identities=9% Similarity=0.015 Sum_probs=58.1
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhc
Q 041566 238 QIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMG 317 (687)
Q Consensus 238 iIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~ 317 (687)
++|..+.+ .++.+|+++.+... +++ ++++- ...+...+.+. +....+.+... ....|-++++..+++
T Consensus 26 llpi~gkp-li~~~l~~l~~~g~--~~i-ivvv~-~~~~~i~~~~~-------~~~~~~~~~~~-~~~~Gt~~si~~al~ 92 (482)
T PRK14352 26 LHTLAGRS-MLGHVLHAAAGLAP--QHL-VVVVG-HDRERVAPAVA-------ELAPEVDIAVQ-DEQPGTGHAVQCALE 92 (482)
T ss_pred eceeCCcc-HHHHHHHHHHhcCC--CcE-EEEEC-CCHHHHHHHhh-------ccCCccEEEeC-CCCCCcHHHHHHHHH
Confidence 34555544 88999999987642 233 23332 22233332222 11122333322 233446788888887
Q ss_pred ccccCCccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 318 CDYVKDYEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 318 ~~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
.......+.++++++|. .++++.+++++..+..
T Consensus 93 ~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~ 126 (482)
T PRK14352 93 ALPADFDGTVVVTAGDVPLLDGETLADLVATHTA 126 (482)
T ss_pred HhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHh
Confidence 42111247899999998 6789999999988764
No 143
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=64.42 E-value=32 Score=35.09 Aligned_cols=90 Identities=18% Similarity=0.129 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCC------CC--ChHhHHHHHhc
Q 041566 246 EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIR------SG--YKAGNLNSAMG 317 (687)
Q Consensus 246 ~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~------~g--gKa~aLn~gl~ 317 (687)
..+..++.|+.+.. +...+.++|+.|+-++...+.+++.... ....+++.....+.. .+ .+..-....+.
T Consensus 13 ~~~~~~l~Sl~~~~-~~~~~~~~il~~~is~~~~~~L~~~~~~-~~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~ 90 (248)
T cd04194 13 PYLAVTIKSILANN-SKRDYDFYILNDDISEENKKKLKELLKK-YNSSIEFIKIDNDDFKFFPATTDHISYATYYRLLIP 90 (248)
T ss_pred HHHHHHHHHHHhcC-CCCceEEEEEeCCCCHHHHHHHHHHHHh-cCCeEEEEEcCHHHHhcCCcccccccHHHHHHHHHH
Confidence 67788889988744 3235778888888777777777765543 122333332211100 01 11111111111
Q ss_pred ccccCCccEEEEEcCCCCCCH
Q 041566 318 CDYVKDYEFVAIFDADFQPTP 338 (687)
Q Consensus 318 ~~~~a~~d~V~~lDaD~~~~p 338 (687)
....+.|-|+.+|+|+++-.
T Consensus 91 -~ll~~~~rvlylD~D~lv~~ 110 (248)
T cd04194 91 -DLLPDYDKVLYLDADIIVLG 110 (248)
T ss_pred -HHhcccCEEEEEeCCEEecC
Confidence 11236899999999997744
No 144
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=64.35 E-value=1.2e+02 Score=32.19 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=38.0
Q ss_pred cCCccEEEEEcCCCCC-CHHHHHHHHHHHccCCCeEEEeeeeeeccC
Q 041566 321 VKDYEFVAIFDADFQP-TPDFLKKTIPYFKGNDDLALVQTRWSFVNK 366 (687)
Q Consensus 321 ~a~~d~V~~lDaD~~~-~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~ 366 (687)
.+..+|+++++.|..+ ++..+..++..|.+ .+++++|-+..+.+.
T Consensus 116 ~~~~~yivVvEddnT~~~~~~l~~~I~aM~~-k~idilQLre~~~~~ 161 (325)
T PF03213_consen 116 DPEDKYIVVVEDDNTLRDITTLHPIIKAMKK-KNIDILQLRETYHNS 161 (325)
T ss_pred cCCCCeEEEEeCCCcccccHHHHHHHHHHHH-cCceEEEEehhhhcc
Confidence 4567899999999866 77999999999995 799999988776654
No 145
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=63.95 E-value=79 Score=30.75 Aligned_cols=87 Identities=17% Similarity=0.093 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccCCcc
Q 041566 246 EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKDYE 325 (687)
Q Consensus 246 ~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~~d 325 (687)
..++.+++.+..... ++ |+|+.+. +...+... ..++.++. .+ ..|...++..|++.. ..+++
T Consensus 31 ~ll~~~l~~l~~~~~--~~--vvvv~~~--~~~~~~~~-------~~~v~~i~--~~--~~G~~~si~~al~~~-~~~~~ 92 (195)
T TIGR03552 31 AMLRDVITALRGAGA--GA--VLVVSPD--PALLEAAR-------NLGAPVLR--DP--GPGLNNALNAALAEA-REPGG 92 (195)
T ss_pred HHHHHHHHHHHhcCC--CC--EEEECCC--HHHHHHHH-------hcCCEEEe--cC--CCCHHHHHHHHHHHh-hccCC
Confidence 345666666665431 23 4455442 22222221 34555442 22 225888888888742 23457
Q ss_pred EEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 326 FVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 326 ~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
.++++-+|+ .++++.+++++..+..
T Consensus 93 ~vlv~~~D~P~l~~~~i~~l~~~~~~ 118 (195)
T TIGR03552 93 AVLILMADLPLLTPRELKRLLAAATE 118 (195)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhccc
Confidence 999999998 5699999999988753
No 146
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=62.52 E-value=86 Score=31.36 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=56.6
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|..+. ..++.+++++.+.. -++ |+|+-....+...+.+++ ....+.++.+..... ..|-++++..+...
T Consensus 26 ~~i~g~-~li~~~l~~l~~~~--~~~--i~vv~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~-~~g~~~sl~~a~~~ 95 (236)
T cd04189 26 IPVAGK-PIIQYAIEDLREAG--IED--IGIVVGPTGEEIKEALGD----GSRFGVRITYILQEE-PLGLAHAVLAARDF 95 (236)
T ss_pred eEECCc-chHHHHHHHHHHCC--CCE--EEEEcCCCHHHHHHHhcc----hhhcCCeEEEEECCC-CCChHHHHHHHHHh
Confidence 444444 78888999888754 223 444444444444433321 112345555543332 23467888888763
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHHHHc-cCCCeEEE
Q 041566 319 DYVKDYEFVAIFDADFQPTPDFLKKTIPYFK-GNDDLALV 357 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~-~~p~vg~V 357 (687)
..+.++ +++.+|...+.+.. +++..+. .+.++.++
T Consensus 96 --i~~~~~-li~~~D~~~~~~~~-~~~~~~~~~~~~~~~~ 131 (236)
T cd04189 96 --LGDEPF-VVYLGDNLIQEGIS-PLVRDFLEEDADASIL 131 (236)
T ss_pred --cCCCCE-EEEECCeecCcCHH-HHHHHHHhcCCceEEE
Confidence 223455 55889998877654 4554443 33344333
No 147
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=60.79 E-value=54 Score=32.93 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=57.0
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHh-hcCcEEEEEeccCCCCChHhHHHHHhc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQ-QRGVHIIYRHRLIRSGYKAGNLNSAMG 317 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~-~~~v~i~~~~r~~~~ggKa~aLn~gl~ 317 (687)
+|..+. ..+..+++++.++... ++ +|+-....+...+.+. ++. +.++++.+..... ..|-++++..+..
T Consensus 26 lpv~g~-pli~~~l~~l~~~g~~--~v--~iv~~~~~~~~~~~l~----~~~~~~~~~i~~~~~~~-~~G~~~al~~a~~ 95 (233)
T cd06425 26 VEFCNK-PMIEHQIEALAKAGVK--EI--ILAVNYRPEDMVPFLK----EYEKKLGIKITFSIETE-PLGTAGPLALARD 95 (233)
T ss_pred CeECCc-chHHHHHHHHHHCCCc--EE--EEEeeeCHHHHHHHHh----cccccCCeEEEeccCCC-CCccHHHHHHHHH
Confidence 455454 6889999999887532 33 3333333343444333 221 3456666543332 3447788888776
Q ss_pred ccccCCccEEEEEcCCCCCCHHHHHHHHHHHcc
Q 041566 318 CDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKG 350 (687)
Q Consensus 318 ~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~ 350 (687)
.....+.+ ++++.+|...+.+ +++++..+..
T Consensus 96 ~~~~~~~~-~lv~~~D~~~~~~-~~~~~~~~~~ 126 (233)
T cd06425 96 LLGDDDEP-FFVLNSDVICDFP-LAELLDFHKK 126 (233)
T ss_pred HhccCCCC-EEEEeCCEeeCCC-HHHHHHHHHH
Confidence 32111245 5677999887766 4777776653
No 148
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=59.54 E-value=2.4e+02 Score=31.31 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=80.6
Q ss_pred hhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhH-HHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCe
Q 041566 276 LDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGN-LNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDL 354 (687)
Q Consensus 276 d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~a-Ln~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~v 354 (687)
+.....++++.+++.+- +..-+.....+...|.-. +..+.+ ..+.+|++-.|+|+.+..+.|-..+..-...|+
T Consensus 192 ~~ldr~Le~Ea~~ygDI-L~lDfvDsY~NLT~KTl~~f~wA~~---~~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~r- 266 (408)
T PLN03193 192 GILDRAIEAEDRKHGDF-LRLDHVEGYLELSAKTKTYFATAVA---MWDADFYVKVDDDVHVNIATLGETLVRHRKKPR- 266 (408)
T ss_pred hHHHHHHHHHHHHhCCE-EEEecccccccchHHHHHHHHHHHH---cCCCeEEEEcCCCceEcHHHHHHHHHhcCCCCC-
Confidence 34445566655544220 111122222233345433 344444 357899999999999999888777755433344
Q ss_pred EEEeeeeee---ccCCCChhHHhhhhhhhhhHHHHHhhccccccccccccceEEEehhhhhhhCC---CCCCCccchHHH
Q 041566 355 ALVQTRWSF---VNKDENLLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECGG---WLDRTTVEDMDI 428 (687)
Q Consensus 355 g~Vqg~~~~---~n~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGG---f~~~~~~ED~~l 428 (687)
+..|.... .+..... +...++ +.... -...+ +....|.+.++.+++...+-. .-.....||..+
T Consensus 267 -lYiG~m~~gPvr~~~~~k---y~epe~---w~~~~-~~~~Y--PpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~EDV~v 336 (408)
T PLN03193 267 -VYIGCMKSGPVLSQKGVR---YHEPEY---WKFGE-NGNKY--FRHATGQLYAISKDLASYISINQHVLHKYANEDVSL 336 (408)
T ss_pred -EEEEecccCccccCCCCc---CcCccc---ccccC-ccccC--CCCCCcceEEehHHHHHHHHhChhhhcccCcchhhh
Confidence 33333211 1111110 000000 00000 00111 112689999999998877531 111223799999
Q ss_pred HHHHHHcCCeEEEEcceEEee
Q 041566 429 AVRAHLCGWKFVYVNDVKCLC 449 (687)
Q Consensus 429 ~~rl~~~G~ri~~~~~a~~~~ 449 (687)
+..+. |..+.++.+....+
T Consensus 337 G~Wl~--~L~V~~vdd~~fcc 355 (408)
T PLN03193 337 GSWFI--GLDVEHIDDRRLCC 355 (408)
T ss_pred hhHhc--cCCceeeecccccC
Confidence 99984 66777777776444
No 149
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=58.58 E-value=40 Score=33.69 Aligned_cols=92 Identities=13% Similarity=0.226 Sum_probs=53.9
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|.-+ ...++.+|+++.+.... + |+|+-....+...+.+. .. .++.+++..... ..|-++++..+...
T Consensus 24 ~~~~g-~~li~~~l~~l~~~gi~--~--i~vv~~~~~~~~~~~~~----~~--~~~~~~~~~~~~-~~g~~~s~~~~~~~ 91 (229)
T cd02523 24 LEING-KPLLERQIETLKEAGID--D--IVIVTGYKKEQIEELLK----KY--PNIKFVYNPDYA-ETNNIYSLYLARDF 91 (229)
T ss_pred eeECC-EEHHHHHHHHHHHCCCc--e--EEEEeccCHHHHHHHHh----cc--CCeEEEeCcchh-hhCcHHHHHHHHHH
Confidence 34434 47888999998876432 3 44444333333332222 11 345555432212 33477888888773
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHH
Q 041566 319 DYVKDYEFVAIFDADFQPTPDFLKKTIP 346 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~~~~pd~L~~lv~ 346 (687)
. .+.++++++|...+++.++.+..
T Consensus 92 --~--~~~~lv~~~D~~~~~~~~~~~~~ 115 (229)
T cd02523 92 --L--DEDFLLLEGDVVFDPSILERLLS 115 (229)
T ss_pred --c--CCCEEEEeCCEecCHHHHHHHHc
Confidence 2 47789999999988877776653
No 150
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=58.54 E-value=86 Score=31.29 Aligned_cols=109 Identities=11% Similarity=0.067 Sum_probs=57.5
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|..+. ..++.+|+++.++. .+++ +++-. ......+.+++..... ..++++.+. +....|-++++..+...
T Consensus 24 l~i~g~-pli~~~l~~l~~~g--~~~i--vvv~~-~~~~~~~~~~~~~~~~-~~~~~i~~~--~~~~~g~~~~l~~a~~~ 94 (231)
T cd04183 24 IEVDGK-PMIEWVIESLAKIF--DSRF--IFICR-DEHNTKFHLDESLKLL-APNATVVEL--DGETLGAACTVLLAADL 94 (231)
T ss_pred eEECCE-EHHHHHHHhhhccC--CceE--EEEEC-hHHhhhhhHHHHHHHh-CCCCEEEEe--CCCCCcHHHHHHHHHhh
Confidence 455554 68889999988765 2233 33332 2222222222222211 235565443 22344577888888763
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEe
Q 041566 319 DYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQ 358 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vq 358 (687)
..+.+.++++.+|+..+.+....+..+...+.+..++.
T Consensus 95 --l~~~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~ 132 (231)
T cd04183 95 --IDNDDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLT 132 (231)
T ss_pred --cCCCCCEEEEecceeeccCHHHHHHHhhccCCceEEEE
Confidence 22346788899999888775544433333333333333
No 151
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=58.48 E-value=56 Score=35.47 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=43.2
Q ss_pred CeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHH
Q 041566 233 PMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKA 284 (687)
Q Consensus 233 P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~ 284 (687)
+.+.|+|-++|..+.++..|+|+.+...=. +..+|+.-|.-+++..++++.
T Consensus 31 ~~~vivvqVH~r~~yl~~li~sL~~~~~I~-~~llifSHd~~~~ein~~v~~ 81 (356)
T PF05060_consen 31 DSIVIVVQVHNRPEYLKLLIDSLSQARGIE-EALLIFSHDFYSEEINDLVQS 81 (356)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHhhCcc-ceEEEEeccCChHHHHHHHHh
Confidence 578999999999999999999998876444 466889999999998888875
No 152
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=58.10 E-value=21 Score=35.79 Aligned_cols=73 Identities=15% Similarity=0.078 Sum_probs=41.0
Q ss_pred ceEEEEEcCCCCh--hHHHHHHHHHHHHhhcCcEEEEEeccCC------CCCh---HhHHHHHhccc----ccCCccEEE
Q 041566 264 RMLVQILDDSDDL--DVQLLIKAEVLKWQQRGVHIIYRHRLIR------SGYK---AGNLNSAMGCD----YVKDYEFVA 328 (687)
Q Consensus 264 ~leViVvDD~s~d--~t~~~l~~~~~~~~~~~v~i~~~~r~~~------~ggK---a~aLn~gl~~~----~~a~~d~V~ 328 (687)
.++-|||+|+... .+.++++ ..|+...+..-+.. ...| ....|.|++.. .....-+|.
T Consensus 10 ~l~WIVVEd~~~~~~~v~~lL~-------~sgl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVy 82 (207)
T PF03360_consen 10 PLHWIVVEDSEETTPLVARLLR-------RSGLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVY 82 (207)
T ss_dssp SEEEEEEESSSS--HHHHHHHH-------HHTSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHH-------HcCCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEE
Confidence 4889999998643 3455554 46676665543321 1112 34678887752 234456888
Q ss_pred EEcCCCCCCHHHHHH
Q 041566 329 IFDADFQPTPDFLKK 343 (687)
Q Consensus 329 ~lDaD~~~~pd~L~~ 343 (687)
|.|+|...+....++
T Consensus 83 FaDDdNtYdl~LF~e 97 (207)
T PF03360_consen 83 FADDDNTYDLRLFDE 97 (207)
T ss_dssp E--TTSEE-HHHHHH
T ss_pred ECCCCCeeeHHHHHH
Confidence 999999999977776
No 153
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=57.96 E-value=78 Score=30.37 Aligned_cols=90 Identities=9% Similarity=0.081 Sum_probs=54.5
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccC
Q 041566 243 NEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVK 322 (687)
Q Consensus 243 NE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a 322 (687)
+....++.+++.+... .++ |+|+-+.... +... ...++.++... .....|-.+++..|+++ .
T Consensus 25 ~g~pll~~~l~~l~~~---~~~--ivv~~~~~~~---~~~~------~~~~~~~i~~~-~~~~~g~~~si~~al~~---~ 86 (186)
T TIGR02665 25 GGKPLIEHVLARLRPQ---VSD--LAISANRNPE---RYAQ------AGFGLPVVPDA-LADFPGPLAGILAGLRW---A 86 (186)
T ss_pred CCEEHHHHHHHHHHhh---CCE--EEEEcCCCHH---HHhh------ccCCCcEEecC-CCCCCCCHHHHHHHHHh---c
Confidence 3456777888877532 222 4555433211 1111 02344443221 12223577888888873 3
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 323 DYEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 323 ~~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
+.|.++++++|. .++++.+++++..+..
T Consensus 87 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 87 GTDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred CCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 678999999998 6799999999998864
No 154
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=57.78 E-value=1.2e+02 Score=32.53 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=36.4
Q ss_pred hHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHcc---CCCeEEEeeeeee
Q 041566 310 GNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKG---NDDLALVQTRWSF 363 (687)
Q Consensus 310 ~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~---~p~vg~Vqg~~~~ 363 (687)
.-.|.|++ .++.++|+++|.|..|.++.-+.+...... ..+.++|-.....
T Consensus 117 ~LRNvAr~---~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~~~~~~~a~VvPaFE~ 170 (317)
T PF13896_consen 117 LLRNVARS---GARTDYVFLLDVDFLPSPGLYEKLLRFARRNIDKSKTAFVVPAFET 170 (317)
T ss_pred HHHHHHHH---hcCcceEEEecceeeeCcchHHHHHHHhhhhccCCceEEEEeeeec
Confidence 34577777 688999999999999998877666655542 3456666655443
No 155
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=56.55 E-value=1e+02 Score=34.70 Aligned_cols=98 Identities=11% Similarity=0.020 Sum_probs=57.9
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhc
Q 041566 238 QIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMG 317 (687)
Q Consensus 238 iIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~ 317 (687)
++|..+. ..++.+|+++.+... +++ ++++.+ ..+...+.+. .+..+.+..... ..|-++++..+++
T Consensus 25 l~pi~g~-pli~~~l~~l~~~gi--~~i-iiv~~~-~~~~i~~~~~--------~~~~i~~~~~~~-~~Gt~~al~~a~~ 90 (459)
T PRK14355 25 MHPLAGR-PMVSWPVAAAREAGA--GRI-VLVVGH-QAEKVREHFA--------GDGDVSFALQEE-QLGTGHAVACAAP 90 (459)
T ss_pred eceeCCc-cHHHHHHHHHHhcCC--CeE-EEEECC-CHHHHHHHhc--------cCCceEEEecCC-CCCHHHHHHHHHH
Confidence 3555554 688888998887542 233 333333 2333332221 122344433333 3347788888876
Q ss_pred ccccCCccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 318 CDYVKDYEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 318 ~~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
.. ....|.++++++|. ..+++.+++++..+..
T Consensus 91 ~l-~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~ 123 (459)
T PRK14355 91 AL-DGFSGTVLILCGDVPLLRAETLQGMLAAHRA 123 (459)
T ss_pred Hh-hccCCcEEEEECCccCcCHHHHHHHHHHHHh
Confidence 31 12257899999998 6789999999988764
No 156
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=55.43 E-value=18 Score=36.82 Aligned_cols=101 Identities=15% Similarity=0.159 Sum_probs=55.8
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhH
Q 041566 232 YPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGN 311 (687)
Q Consensus 232 ~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~a 311 (687)
.|+..|=+- ..+.+.++|+++.+..-. +++||-.|-.. +++++...+++ ...++++-++..+++ -...
T Consensus 21 ~PK~Lvev~---gr~ii~~~i~~L~~~gi~----e~vvV~~g~~~---~lve~~l~~~~-~~~~iv~N~~y~ktN-~~~S 88 (239)
T COG1213 21 IPKALVEVG---GREIIYRTIENLAKAGIT----EFVVVTNGYRA---DLVEEFLKKYP-FNAKIVINSDYEKTN-TGYS 88 (239)
T ss_pred CCchhhhcC---CeEeHHHHHHHHHHcCCc----eEEEEeccchH---HHHHHHHhcCC-cceEEEeCCCcccCC-ceeE
Confidence 455544332 346889999999886522 35566544322 23444444332 234555443333222 1111
Q ss_pred HHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHH
Q 041566 312 LNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYF 348 (687)
Q Consensus 312 Ln~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f 348 (687)
+-.|.+ ..+++ ++++|+|++.+|+++++++..=
T Consensus 89 l~~akd---~~~~~-fii~~sD~vye~~~~e~l~~a~ 121 (239)
T COG1213 89 LLLAKD---YMDGR-FILVMSDHVYEPSILERLLEAP 121 (239)
T ss_pred Eeeehh---hhcCc-EEEEeCCEeecHHHHHHHHhCc
Confidence 222333 22334 8899999999999999998754
No 157
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=55.07 E-value=1e+02 Score=32.21 Aligned_cols=195 Identities=13% Similarity=0.099 Sum_probs=106.8
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|+|+-+ .+.-+|+.+....-. ++ ++|+.....+..+++.-+- .+-++++.|...+.+.| -++|+-.|-.+
T Consensus 26 lpV~~KP-mi~y~l~~L~~aGI~--dI-~II~~~~~~~~~~~llGdg----s~~gv~itY~~Q~~p~G-lA~Av~~a~~f 96 (286)
T COG1209 26 LPVYDKP-MIYYPLETLMLAGIR--DI-LIVVGPEDKPTFKELLGDG----SDFGVDITYAVQPEPDG-LAHAVLIAEDF 96 (286)
T ss_pred ceecCcc-hhHhHHHHHHHcCCc--eE-EEEecCCchhhhhhhhcCc----cccCcceEEEecCCCCc-HHHHHHHHHhh
Confidence 7788855 566677777765533 23 4455555555555544321 13578999988776655 88888766653
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHHHHcc-CCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHH----HHHhhcccc
Q 041566 319 DYVKDYEFVAIFDADFQPTPDFLKKTIPYFKG-NDDLALVQTRWSFVNKDENLLTRLQNINLSFHFE----VEQQVNGVF 393 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~-~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~----~~~~~~~~~ 393 (687)
..+.++++++.+..... -+++.+..+.. +++..+.... +.|+.. .-..++.-... .+....-.
T Consensus 97 --v~~~~f~l~LGDNi~~~--~l~~~~~~~~~~~~ga~i~~~~--V~dP~r-----fGV~e~d~~~~v~~l~EKP~~P~- 164 (286)
T COG1209 97 --VGDDDFVLYLGDNIFQD--GLSELLEHFAEEGSGATILLYE--VDDPSR-----YGVVEFDEDGKVIGLEEKPKEPK- 164 (286)
T ss_pred --cCCCceEEEecCceecc--ChHHHHHHHhccCCCcEEEEEE--cCCccc-----ceEEEEcCCCcEEEeEECCCCCC-
Confidence 56678888887666555 67777777764 2333222222 233321 00001100000 01110000
Q ss_pred ccccccccceEEEehhhhhhhCCCCCCC--ccchHHHHHHHHHcCCeEEEEcceE--EeeccCcCHH
Q 041566 394 INFFGFNGTAGVWRIKALEECGGWLDRT--TVEDMDIAVRAHLCGWKFVYVNDVK--CLCELPESYE 456 (687)
Q Consensus 394 ~~~~~~~G~~~~~Rr~aL~~iGGf~~~~--~~ED~~l~~rl~~~G~ri~~~~~a~--~~~e~P~t~~ 456 (687)
+-..++| ..+|+.++++.+-...+.. -.|=+|....+..+|.++.....-. .-+-.|+++-
T Consensus 165 -SNlAvtG-lY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~sll 229 (286)
T COG1209 165 -SNLAVTG-LYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLL 229 (286)
T ss_pred -CceeEEE-EEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHH
Confidence 0011233 4788999988775443322 2356777888899999888775432 3344566653
No 158
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=54.83 E-value=1.2e+02 Score=30.40 Aligned_cols=95 Identities=12% Similarity=0.150 Sum_probs=55.1
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccC
Q 041566 243 NEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVK 322 (687)
Q Consensus 243 NE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a 322 (687)
+....++.+++.+.+.... ++ |+|+-+... ..++.+... ....++... .... +...++..|++. ..
T Consensus 29 ~g~pli~~~l~~l~~~~~~-~~--ivvv~~~~~--~~~~~~~~~----~~~~~~~~~--~~~~-~~~~sv~~~l~~--~~ 94 (227)
T PRK00155 29 GGKPILEHTLEAFLAHPRI-DE--IIVVVPPDD--RPDFAELLL----AKDPKVTVV--AGGA-ERQDSVLNGLQA--LP 94 (227)
T ss_pred CCEEHHHHHHHHHHcCCCC-CE--EEEEeChHH--HHHHHHHhh----ccCCceEEe--CCcc-hHHHHHHHHHHh--CC
Confidence 3456888899988765322 23 444433222 122222111 111112221 1112 367778888873 23
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHHccC
Q 041566 323 DYEFVAIFDADF-QPTPDFLKKTIPYFKGN 351 (687)
Q Consensus 323 ~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~ 351 (687)
+.|+++++|+|. .++++.+++++..+..+
T Consensus 95 ~~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 124 (227)
T PRK00155 95 DDDWVLVHDAARPFLTPDDIDRLIEAAEET 124 (227)
T ss_pred CCCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 578999999998 56999999999988754
No 159
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=54.02 E-value=1.1e+02 Score=31.14 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=59.1
Q ss_pred EeecCCchHHHHHHHHHHHcC-CCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHh
Q 041566 238 QIPMCNEREVYGQSIAAVCIQ-DWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAM 316 (687)
Q Consensus 238 iIP~yNE~~~l~~tL~Sl~~q-~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl 316 (687)
.+|..+. ..|+..|+++.+. ... + |+|+-....+...+.+.... ...++++.+....... |-++++..+.
T Consensus 25 llpv~g~-plI~~~l~~l~~~~gi~--~--i~iv~~~~~~~i~~~l~~~~---~~~~~~i~~~~~~~~~-Gt~~al~~a~ 95 (257)
T cd06428 25 LFPVAGK-PMIHHHIEACAKVPDLK--E--VLLIGFYPESVFSDFISDAQ---QEFNVPIRYLQEYKPL-GTAGGLYHFR 95 (257)
T ss_pred cCeECCe-eHHHHHHHHHHhcCCCc--E--EEEEecCCHHHHHHHHHhcc---cccCceEEEecCCccC-CcHHHHHHHH
Confidence 4566666 7889999998874 322 3 44454444444444443211 1235666655433333 4677776665
Q ss_pred cccccCCccEEEEEcCCCCCCHHHHHHHHHHHcc
Q 041566 317 GCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKG 350 (687)
Q Consensus 317 ~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~ 350 (687)
......+.+.++++.+|...+.| +..++.....
T Consensus 96 ~~l~~~~~~~~lv~~gD~~~~~d-l~~~~~~h~~ 128 (257)
T cd06428 96 DQILAGNPSAFFVLNADVCCDFP-LQELLEFHKK 128 (257)
T ss_pred HHhhccCCCCEEEEcCCeecCCC-HHHHHHHHHH
Confidence 42111234678889999987654 7777776654
No 160
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=53.33 E-value=79 Score=34.12 Aligned_cols=109 Identities=15% Similarity=0.139 Sum_probs=63.0
Q ss_pred CeEEEEeecCCch--HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCC------
Q 041566 233 PMVLVQIPMCNER--EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIR------ 304 (687)
Q Consensus 233 P~VsViIP~yNE~--~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~------ 304 (687)
..+.|+..+ |+. ..+.-+|.|++.-+ |+..+.+.|++|+-+++..+.+++..+++. ..+.+..+....-
T Consensus 24 ~~i~Iv~~~-D~ny~~~~~vsi~Sil~nn-~~~~~~f~Il~~~is~e~~~~l~~l~~~~~-~~i~~~~id~~~~~~~~~~ 100 (334)
T PRK15171 24 NSLDIAYGI-DKNFLFGCGVSIASVLLNN-PDKSLVFHVFTDYISDADKQRFSALAKQYN-TRINIYLINCERLKSLPST 100 (334)
T ss_pred CceeEEEEC-cHhhHHHHHHHHHHHHHhC-CCCCEEEEEEeCCCCHHHHHHHHHHHHhcC-CeEEEEEeCHHHHhCCccc
Confidence 456666654 554 78899999998653 444588999999888888777777666442 2344333321100
Q ss_pred -CCChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHH
Q 041566 305 -SGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTI 345 (687)
Q Consensus 305 -~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv 345 (687)
.-.++.=....+......+.|-|+.+|+|.++..| |.++.
T Consensus 101 ~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~d-l~~L~ 141 (334)
T PRK15171 101 KNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGS-IKELI 141 (334)
T ss_pred CcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCC-HHHHH
Confidence 11111111111111112368999999999987653 33444
No 161
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=51.51 E-value=89 Score=32.88 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=57.2
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhc
Q 041566 238 QIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMG 317 (687)
Q Consensus 238 iIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~ 317 (687)
++|+++. ..+.-.|..+...... ++ ++|+.....+...+.+. ...+.++++.|...+. ..|-++|+..+..
T Consensus 24 Llpv~gk-PmI~~~L~~l~~aGi~--~I-~iv~~~~~~~~~~~~lg----~g~~~g~~i~~~~q~~-~~Gta~al~~a~~ 94 (286)
T TIGR01207 24 LLPIYDK-PMIYYPLSTLMLAGIR--DI-LIISTPQDTPRFQQLLG----DGSQWGVNLSYAVQPS-PDGLAQAFIIGED 94 (286)
T ss_pred eeEECCE-EhHHHHHHHHHHCCCC--EE-EEEecCCcHHHHHHHhc----cccccCceEEEEEccC-CCCHHHHHHHHHH
Confidence 5778887 6888888888876432 33 22332223233332222 1123467777775443 3458899888877
Q ss_pred ccccCCccEEEEEcCCCCCCHHHHHHHHHHHc
Q 041566 318 CDYVKDYEFVAIFDADFQPTPDFLKKTIPYFK 349 (687)
Q Consensus 318 ~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~ 349 (687)
. ..+.+++++. +|..+.+..+.+++....
T Consensus 95 ~--l~~~~~~li~-gD~i~~~~~l~~ll~~~~ 123 (286)
T TIGR01207 95 F--IGGDPSALVL-GDNIFYGHDLSDLLKRAA 123 (286)
T ss_pred H--hCCCCEEEEE-CCEeccccCHHHHHHHHH
Confidence 4 3345566665 776554455667776554
No 162
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=50.69 E-value=1e+02 Score=32.55 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=57.5
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEE-cCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHh
Q 041566 238 QIPMCNEREVYGQSIAAVCIQDWPKERMLVQIL-DDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAM 316 (687)
Q Consensus 238 iIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVv-DD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl 316 (687)
++|+++. ..+...|+++....- .+ |+++ .....+...+.+. ...+.++++.|...+. ..|-++|+..+.
T Consensus 28 Llpv~gk-PmI~~~l~~l~~aGi--~~--I~ii~~~~~~~~~~~~l~----~g~~~g~~i~y~~q~~-~~Gta~Al~~a~ 97 (292)
T PRK15480 28 LLPIYDK-PMIYYPLSTLMLAGI--RD--ILIISTPQDTPRFQQLLG----DGSQWGLNLQYKVQPS-PDGLAQAFIIGE 97 (292)
T ss_pred EeEECCE-EHHHHHHHHHHHCCC--CE--EEEEecCCchHHHHHHHc----CccccCceeEEEECCC-CCCHHHHHHHHH
Confidence 5788887 688888888887642 23 4433 3222233333322 1123466777765443 445899988877
Q ss_pred cccccCCccEEEEEcCCCCCCHHHHHHHHHHHc
Q 041566 317 GCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFK 349 (687)
Q Consensus 317 ~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~ 349 (687)
.. ..+.++++++ +|.......+.+++....
T Consensus 98 ~~--i~~~~~~lv~-gD~i~~~~~l~~ll~~~~ 127 (292)
T PRK15480 98 EF--IGGDDCALVL-GDNIFYGHDLPKLMEAAV 127 (292)
T ss_pred HH--hCCCCEEEEE-CCeeeeccCHHHHHHHHH
Confidence 63 3345666666 665554445777777654
No 163
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=50.53 E-value=2.2e+02 Score=29.22 Aligned_cols=98 Identities=7% Similarity=-0.040 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEecc---CC-CCChH--hHHHHHhcc
Q 041566 245 REVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRL---IR-SGYKA--GNLNSAMGC 318 (687)
Q Consensus 245 ~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~---~~-~ggKa--~aLn~gl~~ 318 (687)
...+..++.|++... . ..+.+.|++|+-+++..+.+++.++++. ..+.++.+..+ .. ...+. .+....+-.
T Consensus 13 ~~~~~v~l~Sll~nn-~-~~~~fyil~~~is~e~~~~l~~~~~~~~-~~i~~i~i~~~~~~~~~~~~~~~~~~y~rL~~~ 89 (248)
T cd06432 13 ERFLRIMMLSVMKNT-K-SPVKFWFIKNFLSPQFKEFLPEMAKEYG-FEYELVTYKWPRWLHKQTEKQRIIWGYKILFLD 89 (248)
T ss_pred HHHHHHHHHHHHHcC-C-CCEEEEEEeCCCCHHHHHHHHHHHHHhC-CceEEEEecChhhhhcccccchhHHHHHHHHHH
Confidence 367788999998764 2 3588999999988888888888776552 23333332200 00 01111 111111111
Q ss_pred cc-cCCccEEEEEcCCCCCCHHHHHHHHH
Q 041566 319 DY-VKDYEFVAIFDADFQPTPDFLKKTIP 346 (687)
Q Consensus 319 ~~-~a~~d~V~~lDaD~~~~pd~L~~lv~ 346 (687)
.. ..+-|-|+.+|+|+++.. -|.++..
T Consensus 90 ~lLP~~vdkvLYLD~Dilv~~-dL~eL~~ 117 (248)
T cd06432 90 VLFPLNVDKVIFVDADQIVRT-DLKELMD 117 (248)
T ss_pred HhhhhccCEEEEEcCCceecc-cHHHHHh
Confidence 11 235789999999998763 4555553
No 164
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=49.51 E-value=1.5e+02 Score=29.20 Aligned_cols=42 Identities=17% Similarity=0.287 Sum_probs=33.3
Q ss_pred hHhHHHHHhcccccCCccEEEEEcCCC-CCCHHHHHHHHHHHccC
Q 041566 308 KAGNLNSAMGCDYVKDYEFVAIFDADF-QPTPDFLKKTIPYFKGN 351 (687)
Q Consensus 308 Ka~aLn~gl~~~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~ 351 (687)
...++..|++.. .+.|.++++|+|. .++++.+++++..+..+
T Consensus 77 ~~~sl~~~l~~~--~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 119 (217)
T TIGR00453 77 RQDSVRNGLKAL--KDAEWVLVHDAARPFVPKELLDRLLEALRKA 119 (217)
T ss_pred HHHHHHHHHHhC--CCCCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 456777888731 2578999999999 67999999999988654
No 165
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=48.75 E-value=63 Score=33.45 Aligned_cols=117 Identities=16% Similarity=0.104 Sum_probs=65.1
Q ss_pred EEEEe-ecCC-ch--HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEe-c--------
Q 041566 235 VLVQI-PMCN-ER--EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRH-R-------- 301 (687)
Q Consensus 235 VsViI-P~yN-E~--~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~-r-------- 301 (687)
++|.+ |.|. |+ ..+.+-|+.-..+. .++ +++-|.+.++.+.++++...+ ...+.+.... +
T Consensus 3 ~~vCv~pl~~~~~~~~~l~e~ie~~~~~G--~~~--~~~Y~~~~~~~~~~vL~~Y~~---~g~v~~~~w~~~~~~~~~~~ 75 (285)
T PF01697_consen 3 FVVCVSPLFGNEDDWLQLIEWIEYHRLLG--VDH--FYFYDNSSSPSVRKVLKEYER---SGYVEVIPWPLRPKFPDFPS 75 (285)
T ss_pred EEEEccchhcccccHHHHHHHHHHHHHhC--CCE--EEEEEccCCHHHHHhHHHHhh---cCeEEEEEcccccccCCccc
Confidence 44444 6665 54 37777777776663 334 455566688888887775443 2234444332 0
Q ss_pred --c-CCC----CChHhHHHHHhcccccCCccEEEEEcCCCCCCH-H---HHHHHHHHHccC--CCeEEEee
Q 041566 302 --L-IRS----GYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTP-D---FLKKTIPYFKGN--DDLALVQT 359 (687)
Q Consensus 302 --~-~~~----ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~p-d---~L~~lv~~f~~~--p~vg~Vqg 359 (687)
. .+. .+...+.|.++.+ +....+|++++|-|..+-| + ..+.+...+.+. +.++.++-
T Consensus 76 ~~~~~~~~~~~~~q~~a~~DCl~r-~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~~~~~~~~~~~ 145 (285)
T PF01697_consen 76 PFPDPNSSVERRGQIAAYNDCLLR-YRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREFPNISAGAYSF 145 (285)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHH-hhhhceEEEEeccccEEEeccccchhhHHHHHHhhccccceEEEEE
Confidence 0 000 1245567777653 2457899999999985533 2 344455555432 34454443
No 166
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=48.10 E-value=1.4e+02 Score=29.20 Aligned_cols=111 Identities=11% Similarity=0.118 Sum_probs=59.8
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHh----hcCcEEEEEec---cCC
Q 041566 232 YPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQ----QRGVHIIYRHR---LIR 304 (687)
Q Consensus 232 ~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~----~~~v~i~~~~r---~~~ 304 (687)
.|+. ++|..|....++.+++.+.+... ++ |+|+-....+...+.+.+. ..|. ..++.+.+... ++.
T Consensus 19 ~pK~--llpv~g~~pli~~~l~~l~~~gi--~~--iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (200)
T cd02508 19 RAKP--AVPFGGRYRLIDFPLSNMVNSGI--RN--VGVLTQYKSRSLNDHLGSG-KEWDLDRKNGGLFILPPQQRKGGDW 91 (200)
T ss_pred Ccce--eeEECCeeeeHHHHHHHHHHCCC--CE--EEEEeCCChHHHHHHHhCC-CcccCCCCCCCEEEeCcccCCCCCc
Confidence 4444 56777764578888888887542 23 4555544444444433210 0010 11233333211 122
Q ss_pred CCChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHcc
Q 041566 305 SGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKG 350 (687)
Q Consensus 305 ~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~ 350 (687)
..|-++++..+.......+.|.++++-+|.+. +..+.+++..+..
T Consensus 92 ~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~-~~~~~~~l~~~~~ 136 (200)
T cd02508 92 YRGTADAIYQNLDYIERSDPEYVLILSGDHIY-NMDYREMLDFHIE 136 (200)
T ss_pred ccCcHHHHHHHHHHHHhCCCCEEEEecCCEEE-ecCHHHHHHHHHH
Confidence 34578888888763212235778899999854 4457777776653
No 167
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=46.23 E-value=1.4e+02 Score=27.05 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=37.4
Q ss_pred hcCcEEEEEeccCCCCChHhHHHHHhcccccCCccEEEEEcCCC-CCCHHHHHHHHHHHccCCCeEEEeee
Q 041566 291 QRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKDYEFVAIFDADF-QPTPDFLKKTIPYFKGNDDLALVQTR 360 (687)
Q Consensus 291 ~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~p~vg~Vqg~ 360 (687)
..+..+. .+..+.-..-|+.++++. ...++-|+++.+|+ .++++.|+++...+.+ .+ +|-|+
T Consensus 32 ~~~~~~~----~Q~g~dLG~Rm~~a~~~~-~~g~~~vvliGsD~P~l~~~~l~~A~~~L~~-~d--~VlgP 94 (122)
T PF09837_consen 32 PSGFSFF----PQQGGDLGERMANAFQQA-ARGYEPVVLIGSDCPDLTPDDLEQAFEALQR-HD--VVLGP 94 (122)
T ss_dssp -TTSEEE----E--SSSHHHHHHHHHHHH-HTT-SEEEEE-SS-TT--HHHHHHHHHHTTT--S--EEEEE
T ss_pred CCCCEEe----ecCCCCHHHHHHHHHHHH-HcCCCcEEEEcCCCCCCCHHHHHHHHHHhcc-CC--EEEee
Confidence 3455544 223444555677777754 45778999999999 7799999999999985 33 45544
No 168
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=45.64 E-value=1.4e+02 Score=29.39 Aligned_cols=97 Identities=14% Similarity=0.118 Sum_probs=53.1
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|..+. ..++.+|+.+...... + |+|+-+...+...+.+. +....+.++.+.......| -++++..+.+
T Consensus 24 l~~~g~-pli~~~l~~l~~~~~~--~--iivv~~~~~~~i~~~~~----~~~~~~~~i~~~~~~~~~g-~~~~l~~~~~- 92 (220)
T cd06426 24 LKVGGK-PILETIIDRFIAQGFR--N--FYISVNYLAEMIEDYFG----DGSKFGVNISYVREDKPLG-TAGALSLLPE- 92 (220)
T ss_pred CeECCc-chHHHHHHHHHHCCCc--E--EEEECccCHHHHHHHHC----CccccCccEEEEECCCCCc-chHHHHHHHh-
Confidence 444554 5888999998876433 3 34444333332322222 1112345555544333333 5677765543
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHHHHcc
Q 041566 319 DYVKDYEFVAIFDADFQPTPDFLKKTIPYFKG 350 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~ 350 (687)
...+.++++.+|+..+. .+.+++..+..
T Consensus 93 ---~~~~~~lv~~~D~i~~~-~~~~l~~~~~~ 120 (220)
T cd06426 93 ---KPTDPFLVMNGDILTNL-NYEHLLDFHKE 120 (220)
T ss_pred ---hCCCCEEEEcCCEeecc-CHHHHHHHHHh
Confidence 22567888899986655 45677777764
No 169
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=45.37 E-value=5.5e+02 Score=29.85 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=44.6
Q ss_pred hhhhHHHHHHHHHHH---HHHHHHHhhhcc-CccchhHHHHHHHHHHHHHHHHHHHHhhhcCCccCchhHHHHHHHHHHH
Q 041566 86 LKLQQIAYSVVYAVI---YVVRTIQSRSAS-DSSHSRFYRAIKWMLILVISLLCFELAAYFKGWHFSPPTAETAELMVEF 161 (687)
Q Consensus 86 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~ll~~~~~~~~~~w~~~~~~~~~i~~~~~~ 161 (687)
|++|=++-.++-++- ..++..|.-+.. .-++.|+..++...+++.+.++...... ++|...+.++.....+
T Consensus 286 LiaqGiaNi~sglfgg~p~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~-----~IP~a~Laavli~v~~ 360 (554)
T COG0659 286 LIAQGIANIASGLFGGIPATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVS-----YIPLAALAAVLILVGW 360 (554)
T ss_pred HHHhhHHHHHHHHhCCccccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHH-----hCcHHHHHHHHHHHHH
Confidence 456666666666622 222222332222 3334558888888877766666666666 4566665565555555
Q ss_pred HHHHHHhhhh
Q 041566 162 VYATWLQVRA 171 (687)
Q Consensus 162 ~y~~w~~~r~ 171 (687)
.-.-|..++.
T Consensus 361 ~l~~~~~~~~ 370 (554)
T COG0659 361 GLLDWSLLKP 370 (554)
T ss_pred HhccHHHHHH
Confidence 5444444433
No 170
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=45.34 E-value=1.6e+02 Score=28.98 Aligned_cols=89 Identities=12% Similarity=0.094 Sum_probs=54.0
Q ss_pred CchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccC
Q 041566 243 NEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVK 322 (687)
Q Consensus 243 NE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a 322 (687)
+....++.+++.+... .++ |+|+-. ..+. .+.. .+.++.++ .......|-.+++..|++ ..
T Consensus 31 ~g~~ll~~~i~~l~~~---~~~--ivvv~~-~~~~----~~~~----~~~~~~~i--~~~~~~~G~~~si~~~l~---~~ 91 (200)
T PRK02726 31 QGVPLLQRVARIAAAC---ADE--VYIITP-WPER----YQSL----LPPGCHWL--REPPPSQGPLVAFAQGLP---QI 91 (200)
T ss_pred CCEeHHHHHHHHHHhh---CCE--EEEECC-CHHH----HHhh----ccCCCeEe--cCCCCCCChHHHHHHHHH---hC
Confidence 4456788888888643 123 444432 1111 1111 12344433 223323346678888888 34
Q ss_pred CccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 323 DYEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 323 ~~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
+.++++++++|. .++++.+++++.....
T Consensus 92 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 92 KTEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 568999999999 5699999999998754
No 171
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=45.25 E-value=2.4e+02 Score=29.87 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=61.3
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHH---------------HHHHh---hcC
Q 041566 232 YPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAE---------------VLKWQ---QRG 293 (687)
Q Consensus 232 ~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~---------------~~~~~---~~~ 293 (687)
.|+. ++|+.+.+ .++..|+.+.+..-. + |+|+-....+...+..... .+... +.+
T Consensus 24 ~PKp--LvpV~gkP-iI~~vl~~l~~~Gi~--~--ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (297)
T TIGR01105 24 IPKE--MLPIVDKP-MIQYIVDEIVAAGIK--E--IVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPG 96 (297)
T ss_pred CCce--eeEECCEE-HHHHHHHHHHHCCCC--E--EEEEecCChHHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCC
Confidence 4444 46666665 888888888876522 3 4444444444444433210 00000 125
Q ss_pred cEEEEEeccCCCCChHhHHHHHhcccccCCccEEEEEcCCCCCCH-------HHHHHHHHHHc
Q 041566 294 VHIIYRHRLIRSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTP-------DFLKKTIPYFK 349 (687)
Q Consensus 294 v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~p-------d~L~~lv~~f~ 349 (687)
+++.+...... -|-++|+..+... ..+.+++++. +|+..++ -.+.+++..+.
T Consensus 97 ~~i~~~~q~~~-lGtg~Av~~a~~~--l~~~~flvv~-gD~l~~~~~~~~~~~~l~~li~~~~ 155 (297)
T TIGR01105 97 VTIMNVRQAQP-LGLGHSILCARPV--VGDNPFVVVL-PDIIIDDATADPLRYNLAAMIARFN 155 (297)
T ss_pred ceEEEeeCCCc-CchHHHHHHHHHH--hCCCCEEEEE-CCeeccccccccchhHHHHHHHHHH
Confidence 56766654443 4588998888773 2345666665 8877654 37888888665
No 172
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=45.25 E-value=1.8e+02 Score=33.06 Aligned_cols=97 Identities=11% Similarity=0.120 Sum_probs=55.6
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|.-+. ..++.+++++.+... ++ |+|+-....+...+.++ ..++.++ ..+. ..|-++++..+++.
T Consensus 30 lpi~gk-pli~~~l~~l~~~gi--~~--ivvv~~~~~~~i~~~~~-------~~~i~~v--~~~~-~~Gt~~al~~~~~~ 94 (481)
T PRK14358 30 HPVAGR-PMVAWAVKAARDLGA--RK--IVVVTGHGAEQVEAALQ-------GSGVAFA--RQEQ-QLGTGDAFLSGASA 94 (481)
T ss_pred cEECCe-eHHHHHHHHHHhCCC--Ce--EEEEeCCCHHHHHHHhc-------cCCcEEe--cCCC-cCCcHHHHHHHHHH
Confidence 455443 688888988887642 23 33443333333322221 2344433 3222 33468888777763
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHHccC
Q 041566 319 DYVKDYEFVAIFDADF-QPTPDFLKKTIPYFKGN 351 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~ 351 (687)
....+.+ ++++++|. .++++.+++++.....+
T Consensus 95 l~~~~~~-~lV~~gD~P~i~~~~l~~ll~~~~~~ 127 (481)
T PRK14358 95 LTEGDAD-ILVLYGDTPLLRPDTLRALVADHRAQ 127 (481)
T ss_pred hhCCCCc-EEEEeCCeeccCHHHHHHHHHHHHhc
Confidence 2112345 67799998 67888999999887643
No 173
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=44.66 E-value=99 Score=31.12 Aligned_cols=103 Identities=13% Similarity=0.147 Sum_probs=61.1
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|..+....+...|+.+.+... +++ |+|+-....+...+.++ ...+.++++.+...+... |-++++..+...
T Consensus 25 l~i~g~~pli~~~l~~l~~~g~--~~i-i~V~~~~~~~~i~~~~~----~~~~~~~~i~~i~~~~~~-Gta~al~~a~~~ 96 (248)
T PF00483_consen 25 LPIGGKYPLIDYVLENLANAGI--KEI-IVVVNGYKEEQIEEHLG----SGYKFGVKIEYIVQPEPL-GTAGALLQALDF 96 (248)
T ss_dssp SEETTEEEHHHHHHHHHHHTTC--SEE-EEEEETTTHHHHHHHHT----TSGGGTEEEEEEEESSSS-CHHHHHHHTHHH
T ss_pred ceecCCCcchhhhhhhhcccCC--ceE-EEEEeeccccccccccc----ccccccccceeeeccccc-chhHHHHHHHHH
Confidence 5566665688899999988552 233 34444333333333332 222345566665444444 589999888774
Q ss_pred cccCC-ccEEEEEcCCCCCCHHHHHHHHHHHcc
Q 041566 319 DYVKD-YEFVAIFDADFQPTPDFLKKTIPYFKG 350 (687)
Q Consensus 319 ~~~a~-~d~V~~lDaD~~~~pd~L~~lv~~f~~ 350 (687)
..... .+.++++.+|...+. .+..++..+.+
T Consensus 97 i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~ 128 (248)
T PF00483_consen 97 IEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRE 128 (248)
T ss_dssp HTTSEE-SEEEEETTEEEEST-THHHHHHHHHH
T ss_pred hhhccccceEEEEeccccccc-hhhhHHHhhhc
Confidence 21111 346999999998887 55666666553
No 174
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=44.15 E-value=1.4e+02 Score=31.39 Aligned_cols=208 Identities=12% Similarity=0.040 Sum_probs=103.1
Q ss_pred CCeEEEEeec-CCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHh
Q 041566 232 YPMVLVQIPM-CNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAG 310 (687)
Q Consensus 232 ~P~VsViIP~-yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~ 310 (687)
.|+..+.+|+ ++..+.+...+... . .+..+ +.+.-||..|+-.+.- |.+.-+++.. +++.|-.
T Consensus 40 ~~k~Lla~~VG~kqk~~vd~~v~Kf-~---~nF~i-~LfhYDg~vd~w~~~~------ws~~aiHv~~-----~kqtKww 103 (294)
T PF05212_consen 40 KPKYLLAMTVGIKQKDNVDAIVKKF-S---DNFDI-MLFHYDGRVDEWDDFE------WSDRAIHVSA-----RKQTKWW 103 (294)
T ss_pred CCceEEEEEecHHHHhhhhHHHhhh-c---cCceE-EEEEecCCcCchhhcc------cccceEEEEe-----ccceEEe
Confidence 4577777777 44445555555544 2 13223 4566677666543321 2223333332 1222332
Q ss_pred HHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeeeeeccCCCChhHHhhhhhhhhhHHH-H--H
Q 041566 311 NLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRWSFVNKDENLLTRLQNINLSFHFEV-E--Q 387 (687)
Q Consensus 311 aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~~~~~~~r~~~~~~~~~~~~-~--~ 387 (687)
-....+.-...+.+|||.+.|.|..++...+.+.+..+.. .++.+.|+........-.+-...+.-....+... . .
T Consensus 104 ~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~-~gLeISQPALd~~~~~~~~~iT~R~~~~~vhr~~~~~~~ 182 (294)
T PF05212_consen 104 FAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKK-EGLEISQPALDPDSSEIHHPITKRRPDSEVHRKTRGGPR 182 (294)
T ss_pred ehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHH-hCCcccCcccCCCCceeeeeEEeecCCceeEeccCCCCC
Confidence 2222332234679999999999999988778888877764 4555555542211110000000000000111100 0 0
Q ss_pred -hhccccccccc-cccceEEEehhhhhhhCCC-CCC---CccchHHHHHHHHHcCCeEEEEcceEEeeccCcCHH
Q 041566 388 -QVNGVFINFFG-FNGTAGVWRIKALEECGGW-LDR---TTVEDMDIAVRAHLCGWKFVYVNDVKCLCELPESYE 456 (687)
Q Consensus 388 -~~~~~~~~~~~-~~G~~~~~Rr~aL~~iGGf-~~~---~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~P~t~~ 456 (687)
..++......+ +-...=+|.|++++-+=.. ..+ .-+=|+.++.-+..+..++..+....+.+....|+.
T Consensus 183 ~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~~~~~kiGVVDs~~VvH~gvptLG 257 (294)
T PF05212_consen 183 CCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAGDRHKKIGVVDSQYVVHTGVPTLG 257 (294)
T ss_pred cCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhccccccEEEEeeEEEEEcCCCcCC
Confidence 00000000000 1223456889988764211 111 124688888888767889999988776665544443
No 175
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=42.31 E-value=2.3e+02 Score=27.57 Aligned_cols=90 Identities=10% Similarity=0.108 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccCC
Q 041566 244 EREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKD 323 (687)
Q Consensus 244 E~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~ 323 (687)
....+...++++.+.. -++ |+|+-+..++.+...++ .....+ . .. ...|-...+..|++. ...
T Consensus 26 GkplI~~vi~~l~~~~--i~~--I~Vv~~~~~~~~~~~l~-------~~~~~~-~--~~-~g~G~~~~l~~al~~--~~~ 88 (183)
T TIGR00454 26 GRCLIDHVLSPLLKSK--VNN--IIIATSPHTPKTEEYIN-------SAYKDY-K--NA-SGKGYIEDLNECIGE--LYF 88 (183)
T ss_pred CEEHHHHHHHHHHhCC--CCE--EEEEeCCCHHHHHHHHh-------hcCcEE-E--ec-CCCCHHHHHHHHhhc--ccC
Confidence 4567888888887654 223 44444444555555443 222222 1 12 233466788888873 123
Q ss_pred ccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 324 YEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 324 ~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
.+.++++-+|. .+.++.+++++..+..
T Consensus 89 ~~~~lv~~~D~P~i~~~~i~~li~~~~~ 116 (183)
T TIGR00454 89 SEPFLVVSSDLINLRSKIIDSIVDYYYC 116 (183)
T ss_pred CCCEEEEeCCcCcCCHHHHHHHHHHHHh
Confidence 56799999999 4699999999998854
No 176
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=42.17 E-value=4.3e+02 Score=28.82 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=60.4
Q ss_pred eEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCCh-h-HHH-HHHHHHHHHhhcCcEEEEEeccC--CCC--
Q 041566 234 MVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDL-D-VQL-LIKAEVLKWQQRGVHIIYRHRLI--RSG-- 306 (687)
Q Consensus 234 ~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d-~-t~~-~l~~~~~~~~~~~v~i~~~~r~~--~~g-- 306 (687)
+|-=.+...||-+.++--+..+-.. -+ . .+|++...|- + .+. ...+..+++....-+|+|..-.. ..|
T Consensus 80 rV~D~~~f~~ElDlLeiRl~eL~~v---VD-~-FVIvEs~~Tf~G~~KpL~f~~~~~~f~~~~~KIiy~~l~~~~~~g~~ 154 (356)
T PF04724_consen 80 RVYDCFLFNNELDLLEIRLNELYDV---VD-Y-FVIVESNRTFTGKPKPLYFAENKERFAFFHDKIIYVTLDDPPEKGRK 154 (356)
T ss_pred eEEEEEEeCChHHHHHHHHHHhhCc---ce-E-EEEEEECCCcCCCCCCccHHHHHHHHHhhhcceEEEEecCcCCCCCC
Confidence 4544555667778888888777442 11 2 2334432211 0 011 11111122222233455543221 111
Q ss_pred -------ChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHccCCCeEEEeeee
Q 041566 307 -------YKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGNDDLALVQTRW 361 (687)
Q Consensus 307 -------gKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~p~vg~Vqg~~ 361 (687)
....+|+...+......+|+|++-|.|.+|.|+.|+.+- .....|+.-..+-+.
T Consensus 155 ~~w~~E~~qR~~l~~l~~~~~~~~dDliivSDvDEIP~p~~l~~Lr-~cd~~p~~l~l~lr~ 215 (356)
T PF04724_consen 155 DPWDRENYQRNALNGLLRLAGIQDDDLIIVSDVDEIPSPETLKFLR-WCDGFPEPLHLRLRF 215 (356)
T ss_pred chhHHHHHHHHHHHHHhhhcCCCCCCEEEEcCcccccCHHHHHHHH-hcCCCCCeeEEEeec
Confidence 223344333332235789999999999999999887663 333335443344333
No 177
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=41.02 E-value=43 Score=33.51 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=28.7
Q ss_pred cCCch--HHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHH
Q 041566 241 MCNER--EVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKA 284 (687)
Q Consensus 241 ~yNE~--~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~ 284 (687)
+.|+. .-+..++.|+....-.+..+.|++++|+.+++..+.+++
T Consensus 5 ~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~ 50 (250)
T PF01501_consen 5 ACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRA 50 (250)
T ss_dssp ECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhh
Confidence 45555 677788899887663224577888888777666655554
No 178
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=40.29 E-value=2.3e+02 Score=31.71 Aligned_cols=99 Identities=12% Similarity=0.009 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccCC
Q 041566 244 EREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKD 323 (687)
Q Consensus 244 E~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~ 323 (687)
....++.+++++.... .++ |+++-....+...+.+ .+.++++++. +. ..|-++++..+++.....+
T Consensus 32 gkpli~~~l~~l~~~~--~~~--iivv~~~~~~~i~~~~-------~~~~~~~v~~--~~-~~Gt~~al~~a~~~l~~~~ 97 (456)
T PRK14356 32 GEPMLRFVYRALRPLF--GDN--VWTVVGHRADMVRAAF-------PDEDARFVLQ--EQ-QLGTGHALQCAWPSLTAAG 97 (456)
T ss_pred CCcHHHHHHHHHHhcC--CCc--EEEEECCCHHHHHHhc-------cccCceEEEc--CC-CCCcHHHHHHHHHHHhhcC
Confidence 4567888888876643 223 3333332223222211 1234444332 22 2235667777765321234
Q ss_pred ccEEEEEcCCC-CCCHHHHHHHHHHHccCCCeEEE
Q 041566 324 YEFVAIFDADF-QPTPDFLKKTIPYFKGNDDLALV 357 (687)
Q Consensus 324 ~d~V~~lDaD~-~~~pd~L~~lv~~f~~~p~vg~V 357 (687)
.|.++++++|. .++++.+++++.... +.++.++
T Consensus 98 ~d~vlv~~gD~P~i~~~~i~~li~~~~-~~~~~l~ 131 (456)
T PRK14356 98 LDRVLVVNGDTPLVTTDTIDDFLKEAA-GADLAFM 131 (456)
T ss_pred CCcEEEEeCCcccCCHHHHHHHHHHHh-cCCEEEE
Confidence 68999999999 678999999998765 3444333
No 179
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=39.91 E-value=3.3e+02 Score=29.05 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=37.2
Q ss_pred cCCccEEEEEcCCCCC-CHHHHHHHHHHHccCCCeEEEeeeeeeccC
Q 041566 321 VKDYEFVAIFDADFQP-TPDFLKKTIPYFKGNDDLALVQTRWSFVNK 366 (687)
Q Consensus 321 ~a~~d~V~~lDaD~~~-~pd~L~~lv~~f~~~p~vg~Vqg~~~~~n~ 366 (687)
.+..+||++++.|..+ ++..+..++..|.+ .+++++|-+..+.+.
T Consensus 114 ~~~~~yivVlEDDnTi~~~~~~~~~I~~M~~-n~idilQLre~~~~~ 159 (323)
T PHA02688 114 DKEDEYIVVVEDDNTLRDITTLHPIIKAMKE-KNIDILQLRETLHNN 159 (323)
T ss_pred ccCCCeEEEEcCCCcccccHHHHHHHHHHHh-cCeEEEEeehhhhCC
Confidence 4568999999999877 67999999999996 679999987665554
No 180
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=39.75 E-value=2.2e+02 Score=31.75 Aligned_cols=98 Identities=8% Similarity=0.082 Sum_probs=55.1
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|.-+ ...++.+|+++.+.... ++ ++|+. ...+...+.++ + ..+++++ ... ...|-++++..+++.
T Consensus 24 l~v~g-kpli~~~l~~l~~~g~~--~i-ivvv~-~~~~~i~~~~~----~--~~~i~~v--~~~-~~~G~~~sv~~~~~~ 89 (450)
T PRK14360 24 HPLGG-KSLVERVLDSCEELKPD--RR-LVIVG-HQAEEVEQSLA----H--LPGLEFV--EQQ-PQLGTGHAVQQLLPV 89 (450)
T ss_pred CEECC-hhHHHHHHHHHHhCCCC--eE-EEEEC-CCHHHHHHHhc----c--cCCeEEE--EeC-CcCCcHHHHHHHHHH
Confidence 44434 47889999998876432 33 33333 22333322221 1 1134443 222 233456777777653
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHHccC
Q 041566 319 DYVKDYEFVAIFDADF-QPTPDFLKKTIPYFKGN 351 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~ 351 (687)
. ....+.++++|+|. ...++.+++++..+.+.
T Consensus 90 l-~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~ 122 (450)
T PRK14360 90 L-KGFEGDLLVLNGDVPLLRPETLEALLNTHRSS 122 (450)
T ss_pred h-hccCCcEEEEeCCccccCHHHHHHHHHHHHhc
Confidence 1 11235678899998 56889999999887643
No 181
>KOG3917 consensus Beta-1,4-galactosyltransferase B4GALT7/SQV-3 [Carbohydrate transport and metabolism]
Probab=38.78 E-value=1.5e+02 Score=29.90 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=34.4
Q ss_pred cccceEEEehhhhhhhCCCCCCCc---cchHHHHHHHHHcCCeEEE
Q 041566 399 FNGTAGVWRIKALEECGGWLDRTT---VEDMDIAVRAHLCGWKFVY 441 (687)
Q Consensus 399 ~~G~~~~~Rr~aL~~iGGf~~~~~---~ED~~l~~rl~~~G~ri~~ 441 (687)
+.|.-.+.+++-++...|.....- -||-++..|+..+|.+..-
T Consensus 181 fvGGILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLqltR 226 (310)
T KOG3917|consen 181 FVGGILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQLTR 226 (310)
T ss_pred hcceeEEeeHHHHHHhcCccccccccCcccchhhheeccccceEec
Confidence 567778999999999988765444 3899999999999877543
No 182
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=38.72 E-value=3.1e+02 Score=30.56 Aligned_cols=95 Identities=11% Similarity=0.098 Sum_probs=55.6
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|.-+. ..++.+|+++.+... +++ ++++.. ..+...+.+ ..+..+. ... ...|-++++..+++.
T Consensus 25 l~i~Gk-pli~~~l~~l~~~gi--~~i-ivvv~~-~~~~i~~~~--------~~~~~~~--~~~-~~~g~~~al~~a~~~ 88 (458)
T PRK14354 25 HKVCGK-PMVEHVVDSVKKAGI--DKI-VTVVGH-GAEEVKEVL--------GDRSEFA--LQE-EQLGTGHAVMQAEEF 88 (458)
T ss_pred CEeCCc-cHHHHHHHHHHhCCC--CeE-EEEeCC-CHHHHHHHh--------cCCcEEE--EcC-CCCCHHHHHHHHHHH
Confidence 355554 788999999887542 233 333332 223222221 1223332 222 233467778777763
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 319 DYVKDYEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
. ....|.++++++|. ..+++.+++++..+.+
T Consensus 89 l-~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~ 120 (458)
T PRK14354 89 L-ADKEGTTLVICGDTPLITAETLKNLIDFHEE 120 (458)
T ss_pred h-cccCCeEEEEECCccccCHHHHHHHHHHHHh
Confidence 1 11247899999998 6789999999988753
No 183
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=38.00 E-value=3.9e+02 Score=26.61 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=60.8
Q ss_pred chHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccCC
Q 041566 244 EREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKD 323 (687)
Q Consensus 244 E~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~ 323 (687)
....+..+++.+++-. -++ |||+-... ..+..++. ....+++++ ..+.-..|-+..+..|++.... .
T Consensus 30 g~plv~~~~~~a~~a~--~~~--vivV~g~~---~~~~~~a~---~~~~~~~~v--~npd~~~Gls~Sl~ag~~a~~~-~ 96 (199)
T COG2068 30 GKPLVRASAETALSAG--LDR--VIVVTGHR---VAEAVEAL---LAQLGVTVV--VNPDYAQGLSTSLKAGLRAADA-E 96 (199)
T ss_pred CCcHHHHHHHHHHhcC--CCe--EEEEeCcc---hhhHHHhh---hccCCeEEE--eCcchhhhHhHHHHHHHHhccc-C
Confidence 3356778888777643 223 66666554 11222211 113555555 3444455688899999984322 2
Q ss_pred ccEEEEEcCCC-CCCHHHHHHHHHHHccC
Q 041566 324 YEFVAIFDADF-QPTPDFLKKTIPYFKGN 351 (687)
Q Consensus 324 ~d~V~~lDaD~-~~~pd~L~~lv~~f~~~ 351 (687)
++.++++=+|. .+.++.+.+++..+..+
T Consensus 97 ~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 97 GDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 26999999998 68999999999999864
No 184
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=35.19 E-value=96 Score=39.20 Aligned_cols=136 Identities=15% Similarity=0.045 Sum_probs=71.5
Q ss_pred ChHhHHHHHhcccccCCccEEEEEcCC--CCCCH-HHHHHHHHHHccCC----CeEEEeeeeeeccCCCChhHHh-hhhh
Q 041566 307 YKAGNLNSAMGCDYVKDYEFVAIFDAD--FQPTP-DFLKKTIPYFKGND----DLALVQTRWSFVNKDENLLTRL-QNIN 378 (687)
Q Consensus 307 gKa~aLn~gl~~~~~a~~d~V~~lDaD--~~~~p-d~L~~lv~~f~~~p----~vg~Vqg~~~~~n~~~~~~~r~-~~~~ 378 (687)
||..|.|.++- -.+||++-.+|+. ..++. =-++.++..|++.. ...+++.+......+-+.+... .+-+
T Consensus 1051 GKpeNQNhaii---FtRGE~iQtIDmNQDnYlEE~lKmRnlL~EF~~~~~g~r~ptIlG~RE~IFt~svssLa~fms~qE 1127 (1679)
T KOG0916|consen 1051 GKPENQNHAII---FTRGEAIQTIDMNQDNYLEEALKMRNLLQEFEELHLGIRPPTILGAREHIFTGSVSSLAWFMSGQE 1127 (1679)
T ss_pred CCCcccCceee---eecchhhheecccchHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhheecCCchHHHHHHccCc
Confidence 79999999987 5799999999995 33322 23456666776432 3456666655444332222211 1111
Q ss_pred hhhhHHHHHhhccccccccccccceEEEehhhhhhhCCCC----CCCccchHHHHHHHHHcCCeEEEEcceE
Q 041566 379 LSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECGGWL----DRTTVEDMDIAVRAHLCGWKFVYVNDVK 446 (687)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~----~~~~~ED~~l~~rl~~~G~ri~~~~~a~ 446 (687)
..+. ...+..-+.-+.+-.--|+-=++.|-..-.-||-. .-++.||..-++-...+|-++..+.-..
T Consensus 1128 qSFv-TlgqR~LA~p~~vr~HYGHPD~~drif~~TRGGvSKAsk~inlsEDIfAG~n~tlRgG~itH~EYiQ 1198 (1679)
T KOG0916|consen 1128 QSFV-TLGQRTLANPGGVRLHYGHPDVFDRIFHITRGGVSKASKGINLSEDIFAGFNATLRGGNITHHEYIQ 1198 (1679)
T ss_pred cchh-hHHHHHhccccceeeecCCCcHhhhhhhhccccchHhhcccccchHhhhhhhHHhhCCCcccceeee
Confidence 1111 11111111111100012332233332222235543 2356899999999999998887766443
No 185
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=35.13 E-value=3.6e+02 Score=27.39 Aligned_cols=107 Identities=9% Similarity=0.015 Sum_probs=58.6
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEe------cc---
Q 041566 232 YPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRH------RL--- 302 (687)
Q Consensus 232 ~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~------r~--- 302 (687)
.|+. ++|..+.+ .+..+++++.+.... + |+|+-....+...+.+++..+. ..++++.+.. .+
T Consensus 19 ~pK~--llpv~~~p-~i~~~~~~~~~~gi~--~--i~iv~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 89 (253)
T cd02524 19 KPKP--MVEIGGRP-ILWHIMKIYSHYGHN--D--FILCLGYKGHVIKEYFLNYFLH--NSDVTIDLGTNRIELHNSDIE 89 (253)
T ss_pred CCce--EEEECCEE-HHHHHHHHHHhCCCc--e--EEEECCCCHHHHHHHHHhhhhh--cCceeEeecccceeeeccccc
Confidence 4544 45666655 778888888876432 3 4555544444444444321110 1123332210 11
Q ss_pred ---------CCCCChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHcc
Q 041566 303 ---------IRSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKG 350 (687)
Q Consensus 303 ---------~~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~ 350 (687)
...-+-++++..+.+. ..+.+.++++++|.+.+.+. ..++.....
T Consensus 90 ~~~~~~~~~~~~~~t~~al~~a~~~--~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~ 143 (253)
T cd02524 90 DWKVTLVDTGLNTMTGGRLKRVRRY--LGDDETFMLTYGDGVSDVNI-NALIEFHRS 143 (253)
T ss_pred ccceeecccCcccccHHHHHHHHHh--cCCCCeEEEEcCCEEECCCH-HHHHHHHHH
Confidence 0012357788777763 22227899999999888776 788876543
No 186
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=35.07 E-value=7.7e+02 Score=28.58 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHc------CCCCCCceEEEEEcCCC----ChhHHHHHHHHHHHHhhcCcEEEEEe
Q 041566 246 EVYGQSIAAVCI------QDWPKERMLVQILDDSD----DLDVQLLIKAEVLKWQQRGVHIIYRH 300 (687)
Q Consensus 246 ~~l~~tL~Sl~~------q~yP~~~leViVvDD~s----~d~t~~~l~~~~~~~~~~~v~i~~~~ 300 (687)
+.+++.+....+ ++-| .+..+|+|=+. |-.-.+.+++..+++.+++.++....
T Consensus 471 ~~~~~~l~~~~~~~~~~~~~~~--~~~~vIlD~~~V~~iDsSg~~~L~~l~~~l~~~g~~l~l~~ 533 (563)
T TIGR00815 471 EDLKDRLLKRIEDETRRELERP--PLQVVILDMSAVPHLDTSGIHALEELRKELKARGIQLLLAN 533 (563)
T ss_pred HHHHHHHHHHHhhhccccccCC--CceEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 566666655544 2222 24566666542 33334556666777777888877653
No 187
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=34.49 E-value=4.6e+02 Score=26.72 Aligned_cols=208 Identities=13% Similarity=0.079 Sum_probs=93.8
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEe-----------
Q 041566 232 YPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRH----------- 300 (687)
Q Consensus 232 ~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~----------- 300 (687)
.|+. ++|.-+.+ .+..+++++.+..- ++ |+|+-....+...+.+.+... ...+.++.+..
T Consensus 20 ~pK~--llpv~g~p-ii~~~l~~l~~~gi--~~--i~iv~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 90 (254)
T TIGR02623 20 RPKP--MVEIGGKP-ILWHIMKIYSHHGI--ND--FIICCGYKGYVIKEYFANYFL--HMSDVTFHMADNTMEVHHKRVE 90 (254)
T ss_pred CCcc--eeEECCEE-HHHHHHHHHHHCCC--CE--EEEEcCCCHHHHHHHHHhhhh--cccCeeEEecccccccccccCC
Confidence 4443 45666666 78888888887632 23 455544444444443332110 01123332210
Q ss_pred -------ccCCCCChHhHHHHHhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHc-cCCCeEEEeeeeeeccCCCChhH
Q 041566 301 -------RLIRSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFK-GNDDLALVQTRWSFVNKDENLLT 372 (687)
Q Consensus 301 -------r~~~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~-~~p~vg~Vqg~~~~~n~~~~~~~ 372 (687)
.+....|-++++..+.+. . +.+.++++++|.+.+.| +++++.... .+.++.++.. .+... ..
T Consensus 91 ~~~~~~~~~~~~~gt~~al~~~~~~--i-~~e~flv~~gD~i~~~d-l~~~~~~h~~~~~d~tl~~~----~~~~~--yG 160 (254)
T TIGR02623 91 PWRVTLVDTGESTQTGGRLKRVREY--L-DDEAFCFTYGDGVADID-IKALIAFHRKHGKKATVTAV----QPPGR--FG 160 (254)
T ss_pred ccceeeeecCCcCCcHHHHHHHHHh--c-CCCeEEEEeCCeEecCC-HHHHHHHHHHcCCCEEEEEe----cCCCc--cc
Confidence 111223457788877763 2 34567799999976554 555655443 3334333321 11100 00
Q ss_pred Hhhhhh-hhhhHHHHHhhccccccccccccceEEEehhhhhhhCCCCCCCccchHHHHHHHHHcCCeEEEEcceEEeecc
Q 041566 373 RLQNIN-LSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEECGGWLDRTTVEDMDIAVRAHLCGWKFVYVNDVKCLCEL 451 (687)
Q Consensus 373 r~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~aL~~iGGf~~~~~~ED~~l~~rl~~~G~ri~~~~~a~~~~e~ 451 (687)
....-+ ....+. +..... .. . .+....+++++.++.+. +.......++...+..+|.-..|.-+- .+. -
T Consensus 161 ~v~~d~~~V~~~~-Ekp~~~--~~-~-i~~Giyi~~~~il~~l~---~~~~~~~~d~i~~l~~~~~v~~~~~~g-~w~-d 230 (254)
T TIGR02623 161 ALDLEGEQVTSFQ-EKPLGD--GG-W-INGGFFVLNPSVLDLID---GDATVWEQEPLETLAQRGELSAYEHSG-FWQ-P 230 (254)
T ss_pred EEEECCCeEEEEE-eCCCCC--CC-e-EEEEEEEEcHHHHhhcc---ccCchhhhhHHHHHHhCCCEEEEeCCC-EEe-c
Confidence 000000 000000 110000 01 1 33446888999886552 111122245666777777543333322 222 2
Q ss_pred CcCHHHHHHHHHHhhcc
Q 041566 452 PESYEAYKKQQHRWHSG 468 (687)
Q Consensus 452 P~t~~~~~~Qr~RW~~G 468 (687)
-.|..++.+-+.+|..|
T Consensus 231 Igt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 231 MDTLRDKNYLEELWESG 247 (254)
T ss_pred CCchHHHHHHHHHHHcC
Confidence 23445565556666665
No 188
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=33.42 E-value=4.2e+02 Score=26.12 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=51.7
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHh--h-cCcEEEEEeccCCCCChHhHHHH
Q 041566 238 QIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQ--Q-RGVHIIYRHRLIRSGYKAGNLNS 314 (687)
Q Consensus 238 iIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~--~-~~v~i~~~~r~~~~ggKa~aLn~ 314 (687)
++|.-|. ..+..+++.+.+.. -+++ +|+-... ..+.+++..++.. . .+..+.+.. .....|-++++..
T Consensus 25 Llpv~g~-pli~~~l~~l~~~g--~~~i--ivv~~~~---~~~~i~~~l~~~~~~~~~~~~~~~~~-~~~~~gt~~al~~ 95 (214)
T cd04198 25 LLPVANK-PMIWYPLDWLEKAG--FEDV--IVVVPEE---EQAEISTYLRSFPLNLKQKLDEVTIV-LDEDMGTADSLRH 95 (214)
T ss_pred cCEECCe-eHHHHHHHHHHHCC--CCeE--EEEECHH---HHHHHHHHHHhcccccCcceeEEEec-CCCCcChHHHHHH
Confidence 3555554 67888888888743 2233 3333221 1122333322211 1 122333332 2334457888988
Q ss_pred HhcccccCCccEEEEEcCCCCCCHHHHHHHHHHHcc
Q 041566 315 AMGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKG 350 (687)
Q Consensus 315 gl~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~ 350 (687)
+... .+. -++++.+|.+.+.+ +..++..+..
T Consensus 96 ~~~~---i~~-d~lv~~~D~i~~~~-l~~~l~~h~~ 126 (214)
T cd04198 96 IRKK---IKK-DFLVLSCDLITDLP-LIELVDLHRS 126 (214)
T ss_pred HHhh---cCC-CEEEEeCccccccC-HHHHHHHHhc
Confidence 8773 233 47788999765544 5566665553
No 189
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=33.30 E-value=2.7e+02 Score=30.26 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=65.8
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|.-|. ..++..|+++.++..- +|+++-..-.+...+.+.. ....+.++.|.......| -++++..+...
T Consensus 27 lpI~gk-Pii~~~l~~L~~~Gv~----eivi~~~y~~~~i~~~~~d----~~~~~~~I~y~~e~~~lG-Tag~l~~a~~~ 96 (358)
T COG1208 27 LPIAGK-PLIEYVLEALAAAGVE----EIVLVVGYLGEQIEEYFGD----GEGLGVRITYVVEKEPLG-TAGALKNALDL 96 (358)
T ss_pred ceeCCc-cHHHHHHHHHHHCCCc----EEEEEeccchHHHHHHHhc----ccccCCceEEEecCCcCc-cHHHHHHHHHh
Confidence 445443 4788889998886532 3555544444444333332 123468888876555444 88999998873
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHHHHccC
Q 041566 319 DYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGN 351 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~~ 351 (687)
-..+-++++-+|...+-| +..++.....+
T Consensus 97 ---l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~ 125 (358)
T COG1208 97 ---LGGDDFLVLNGDVLTDLD-LSELLEFHKKK 125 (358)
T ss_pred ---cCCCcEEEEECCeeeccC-HHHHHHHHHhc
Confidence 333788899999999988 99999888754
No 190
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=32.80 E-value=4.2e+02 Score=29.64 Aligned_cols=94 Identities=9% Similarity=0.032 Sum_probs=54.3
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|..+ ...++.+++++.+.. -+++ +++-....+. +++... +.++.++ ..+ ...|-++++..+++.
T Consensus 28 ~~i~g-kpli~~~i~~l~~~g--i~~i--~vv~~~~~~~----i~~~~~---~~~~~~i--~~~-~~~Gt~~al~~a~~~ 92 (456)
T PRK09451 28 HTLAG-KPMVQHVIDAANELG--AQHV--HLVYGHGGDL----LKQTLA---DEPLNWV--LQA-EQLGTGHAMQQAAPF 92 (456)
T ss_pred ceeCC-hhHHHHHHHHHHhcC--CCcE--EEEECCCHHH----HHHhhc---cCCcEEE--ECC-CCCCcHHHHHHHHHh
Confidence 44444 557888888887654 2234 3333222222 222211 2234433 222 233477888888763
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHHHHc
Q 041566 319 DYVKDYEFVAIFDADF-QPTPDFLKKTIPYFK 349 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~ 349 (687)
..+.+.++++++|. .+.++.+++++....
T Consensus 93 --l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~ 122 (456)
T PRK09451 93 --FADDEDILMLYGDVPLISVETLQRLRDAKP 122 (456)
T ss_pred --hccCCcEEEEeCCcccCCHHHHHHHHHHhh
Confidence 23457899999998 568888998887654
No 191
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=31.93 E-value=4.2e+02 Score=26.53 Aligned_cols=105 Identities=10% Similarity=0.101 Sum_probs=55.6
Q ss_pred ecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCC-ChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 240 PMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSD-DLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 240 P~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s-~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
|.-+ ...+..+|+++.+.... + |+++-... .+...+.+. .....++++.+.... ...|-++++..+...
T Consensus 27 pv~~-~pli~~~l~~l~~~gi~--~--i~vv~~~~~~~~~~~~l~----~~~~~~~~i~~~~~~-~~~G~~~al~~a~~~ 96 (240)
T cd02538 27 PVYD-KPMIYYPLSTLMLAGIR--E--ILIISTPEDLPLFKELLG----DGSDLGIRITYAVQP-KPGGLAQAFIIGEEF 96 (240)
T ss_pred EECC-EEhHHHHHHHHHHCCCC--E--EEEEeCcchHHHHHHHHh----cccccCceEEEeeCC-CCCCHHHHHHHHHHh
Confidence 4433 46888888888875422 3 44443322 222222222 111235566665432 334578888877763
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHHHHcc-CCCeEEE
Q 041566 319 DYVKDYEFVAIFDADFQPTPDFLKKTIPYFKG-NDDLALV 357 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~-~p~vg~V 357 (687)
. +.|-++++.+|....+..+.+++..... +.++.++
T Consensus 97 --~-~~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (240)
T cd02538 97 --I-GDDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVF 133 (240)
T ss_pred --c-CCCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEE
Confidence 2 2344556678876655567777766542 3344333
No 192
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=31.50 E-value=3.9e+02 Score=27.18 Aligned_cols=106 Identities=12% Similarity=0.150 Sum_probs=64.8
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhc
Q 041566 238 QIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMG 317 (687)
Q Consensus 238 iIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~ 317 (687)
+.|.-.|+ .|..+|+.+....+-+ ++.|--.|+..++...+.+. .+|+.+. .|.-..-+.....
T Consensus 22 LlpL~~~p-mI~~~lervrks~~~d-~ivvATS~~~~d~~l~~~~~-------~~G~~vf-------rGs~~dVL~Rf~~ 85 (241)
T COG1861 22 LLPLGGEP-MIEYQLERVRKSKDLD-KIVVATSDKEEDDALEEVCR-------SHGFYVF-------RGSEEDVLQRFII 85 (241)
T ss_pred hhhcCCCc-hHHHHHHHHhcccccc-ceEEEecCCcchhHHHHHHH-------HcCeeEe-------cCCHHHHHHHHHH
Confidence 34444444 5677888888766544 55555555555665555544 5777654 2334444444433
Q ss_pred ccccCCccEEEEEcCCC-CCCHHHHHHHHHHHccCCCeEEEeee
Q 041566 318 CDYVKDYEFVAIFDADF-QPTPDFLKKTIPYFKGNDDLALVQTR 360 (687)
Q Consensus 318 ~~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~p~vg~Vqg~ 360 (687)
....-+++.|+-+-+|+ .++|+-+..++..+.+ .+.+.+...
T Consensus 86 a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~-~gaDY~s~~ 128 (241)
T COG1861 86 AIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLE-KGADYVSNT 128 (241)
T ss_pred HHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHh-cCCcccccc
Confidence 32245677999999999 6699999988876663 343455443
No 193
>PRK11660 putative transporter; Provisional
Probab=31.41 E-value=8.8e+02 Score=28.15 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCCCCCceEEEEEcCCC----ChhHHHHHHHHHHHHhhcCcEEEEE
Q 041566 246 EVYGQSIAAVCIQDWPKERMLVQILDDSD----DLDVQLLIKAEVLKWQQRGVHIIYR 299 (687)
Q Consensus 246 ~~l~~tL~Sl~~q~yP~~~leViVvDD~s----~d~t~~~l~~~~~~~~~~~v~i~~~ 299 (687)
+.+++.++... ++.+ .+|+|=+. |-.-.+.+++..++..+ +.++...
T Consensus 478 ~~l~~~l~~~~----~~~~--~VVlD~~~V~~iDssg~~~L~~l~~~l~~-g~~l~l~ 528 (568)
T PRK11660 478 ERLFTELESRT----EGKR--IVVLQWDAVPVLDAGGLDAFQRFVKRLPE-GCELRIC 528 (568)
T ss_pred HHHHHHHHhhC----CCCC--EEEEEcCCCCcccHHHHHHHHHHHHHHHC-CCEEEEe
Confidence 55566655543 2222 44555443 33445566777777777 8887655
No 194
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=31.09 E-value=4.7e+02 Score=27.13 Aligned_cols=90 Identities=9% Similarity=0.078 Sum_probs=49.4
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhc
Q 041566 238 QIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMG 317 (687)
Q Consensus 238 iIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~ 317 (687)
++|..+....++.+++.+....- .++ |+|+-... ..+.+++..+. ...+++++. .+.. .+-++++..+..
T Consensus 26 ll~l~g~~~li~~~l~~l~~~~~-~~~--i~vvt~~~---~~~~v~~~l~~-~~~~~~ii~--ep~~-~gTa~ai~~a~~ 95 (274)
T cd02509 26 FLKLFGDKSLLQQTLDRLKGLVP-PDR--ILVVTNEE---YRFLVREQLPE-GLPEENIIL--EPEG-RNTAPAIALAAL 95 (274)
T ss_pred EeEcCCCCcHHHHHHHHHhcCCC-CCc--EEEEechH---HHHHHHHHHhh-cCCCceEEE--CCCC-CCcHHHHHHHHH
Confidence 35666667899999999887641 223 44444321 22233333321 012344443 2322 346777776665
Q ss_pred ccc-cCCccEEEEEcCCCCCC
Q 041566 318 CDY-VKDYEFVAIFDADFQPT 337 (687)
Q Consensus 318 ~~~-~a~~d~V~~lDaD~~~~ 337 (687)
... ....++++++.+|+...
T Consensus 96 ~~~~~~~~~~vlVl~~D~~i~ 116 (274)
T cd02509 96 YLAKRDPDAVLLVLPSDHLIE 116 (274)
T ss_pred HHHhcCCCCeEEEecchhccc
Confidence 321 12457999999998775
No 195
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=30.38 E-value=4e+02 Score=26.25 Aligned_cols=90 Identities=17% Similarity=0.202 Sum_probs=58.5
Q ss_pred CCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhccccc
Q 041566 242 CNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYV 321 (687)
Q Consensus 242 yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~ 321 (687)
.|....++..++.+..|. . +++|+-+...+. . ...++.++.-. .... |--.++-.|++ .
T Consensus 26 ~~g~~lie~v~~~L~~~~----~-~vvi~~~~~~~~---~--------~~~g~~vv~D~-~~~~-GPL~Gi~~al~---~ 84 (192)
T COG0746 26 LNGRPLIEHVIDRLRPQV----D-VVVISANRNQGR---Y--------AEFGLPVVPDE-LPGF-GPLAGILAALR---H 84 (192)
T ss_pred eCCeEHHHHHHHHhcccC----C-EEEEeCCCchhh---h--------hccCCceeecC-CCCC-CCHHHHHHHHH---h
Confidence 355556777777776653 2 244444433331 1 13456655321 1112 57778888998 5
Q ss_pred CCccEEEEEcCCC-CCCHHHHHHHHHHHccCC
Q 041566 322 KDYEFVAIFDADF-QPTPDFLKKTIPYFKGND 352 (687)
Q Consensus 322 a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~~p 352 (687)
..+++++++=+|+ .++++.+.++...+..++
T Consensus 85 ~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 85 FGTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 6799999999999 669999999999998645
No 196
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=30.33 E-value=5.2e+02 Score=28.67 Aligned_cols=94 Identities=13% Similarity=0.028 Sum_probs=56.1
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhc
Q 041566 238 QIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMG 317 (687)
Q Consensus 238 iIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~ 317 (687)
++|..+. ..++.+|+++.+.. ++ |+|+-+...+. +++.. ..++.+. .++. ..|-++++..+++
T Consensus 22 l~~v~gk-pli~~~l~~l~~~~---~~--i~vv~~~~~~~----i~~~~----~~~~~~~--~~~~-~~g~~~ai~~a~~ 84 (448)
T PRK14357 22 LHKISGK-PMINWVIDTAKKVA---QK--VGVVLGHEAEL----VKKLL----PEWVKIF--LQEE-QLGTAHAVMCARD 84 (448)
T ss_pred eeEECCe-eHHHHHHHHHHhcC---Cc--EEEEeCCCHHH----HHHhc----ccccEEE--ecCC-CCChHHHHHHHHH
Confidence 4555554 78888898888742 34 33333322222 22211 1234432 2222 3346788888876
Q ss_pred ccccCCccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 318 CDYVKDYEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 318 ~~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
. ..+.|.++++++|. ...++.+++++..+.+
T Consensus 85 ~--l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~ 116 (448)
T PRK14357 85 F--IEPGDDLLILYGDVPLISENTLKRLIEEHNR 116 (448)
T ss_pred h--cCcCCeEEEEeCCcccCCHHHHHHHHHHHHh
Confidence 3 23358899999998 5688889999988764
No 197
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=30.20 E-value=5.6e+02 Score=25.54 Aligned_cols=101 Identities=15% Similarity=0.108 Sum_probs=49.2
Q ss_pred CchHHHHHHHHHHH---cCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhccc
Q 041566 243 NEREVYGQSIAAVC---IQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCD 319 (687)
Q Consensus 243 NE~~~l~~tL~Sl~---~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~ 319 (687)
|+..+++..++... ..+.|. + |+++-||..++..++ ++.+.+.....+.+.++.--+..-+--..|.. |+..
T Consensus 84 ~y~~vm~~v~~~y~~~~~~~~P~--~-VlFiTDG~~~~~~~~-~~~i~~as~~pifwqFVgiG~~~f~fL~kLD~-l~gR 158 (200)
T PF10138_consen 84 NYAPVMEDVLDHYFKREPSDAPA--L-VLFITDGGPDDRRAI-EKLIREASDEPIFWQFVGIGDSNFGFLEKLDD-LAGR 158 (200)
T ss_pred chHHHHHHHHHHHhhcCCCCCCe--E-EEEEecCCccchHHH-HHHHHhccCCCeeEEEEEecCCcchHHHHhhc-cCCc
Confidence 55677888887777 334453 4 555555543333322 22332223444544444211111111112222 2222
Q ss_pred ccCCccEEEEEcCCCCCCHHHHHHHHHHH
Q 041566 320 YVKDYEFVAIFDADFQPTPDFLKKTIPYF 348 (687)
Q Consensus 320 ~~a~~d~V~~lDaD~~~~pd~L~~lv~~f 348 (687)
...+..++.+=|-|.+.+..--++++..|
T Consensus 159 ~vDNa~Ff~~~d~~~lsD~eLy~~LL~Ef 187 (200)
T PF10138_consen 159 VVDNAGFFAIDDIDELSDEELYDRLLAEF 187 (200)
T ss_pred ccCCcCeEecCCcccCCHHHHHHHHHHHH
Confidence 34667777776667666666666666555
No 198
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=29.47 E-value=4e+02 Score=28.56 Aligned_cols=96 Identities=14% Similarity=0.162 Sum_probs=55.0
Q ss_pred ecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCC-CChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 240 PMCNEREVYGQSIAAVCIQDWPKERMLVQILDDS-DDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 240 P~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~-s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
|.-+. ..+..+++++.+.. -++ |+++-.. ..+...+.+. .....+.++.+..... ..|-++++..+.+.
T Consensus 26 pv~g~-pli~~~l~~l~~~g--i~~--i~vv~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~-~~G~~~al~~a~~~ 95 (353)
T TIGR01208 26 PVANK-PILQYAIEDLAEAG--ITD--IGIVVGPVTGEEIKEIVG----EGERFGAKITYIVQGE-PLGLAHAVYTARDF 95 (353)
T ss_pred EECCE-eHHHHHHHHHHHCC--CCE--EEEEeCCCCHHHHHHHHh----cccccCceEEEEECCC-CCCHHHHHHHHHHh
Confidence 44454 78889999988764 223 4444443 3343333332 1112345565554333 34588888888773
Q ss_pred cccCCccEEEEEcCCCCCCHHHHHHHHHHHc
Q 041566 319 DYVKDYEFVAIFDADFQPTPDFLKKTIPYFK 349 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~ 349 (687)
..+.+ ++++.+|...+ ..+.+++..+.
T Consensus 96 --l~~~~-~li~~gD~~~~-~~l~~l~~~~~ 122 (353)
T TIGR01208 96 --LGDDD-FVVYLGDNLIQ-DGISRFVKSFE 122 (353)
T ss_pred --cCCCC-EEEEECCeecC-ccHHHHHHHHH
Confidence 23345 45667998776 45677777665
No 199
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=29.04 E-value=4.4e+02 Score=25.99 Aligned_cols=103 Identities=12% Similarity=0.072 Sum_probs=53.6
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhc--CcEEEEEeccCCCCChHhHHHHH
Q 041566 238 QIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQR--GVHIIYRHRLIRSGYKAGNLNSA 315 (687)
Q Consensus 238 iIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~--~v~i~~~~r~~~~ggKa~aLn~g 315 (687)
.+|.-|. ..+...|+++.+..-. + |+|+-+...+...+.+++.. .+... +..+.+...+ ...+-++++...
T Consensus 25 llpi~g~-piI~~~l~~l~~~Gi~--~--I~iv~~~~~~~i~~~l~~~~-~~~~~~~~~~i~~~~~~-~~~~~~~al~~~ 97 (217)
T cd04197 25 LLPLANV-PLIDYTLEFLALNGVE--E--VFVFCCSHSDQIKEYIEKSK-WSKPKSSLMIVIIIMSE-DCRSLGDALRDL 97 (217)
T ss_pred eeEECCE-ehHHHHHHHHHHCCCC--e--EEEEeCCCHHHHHHHHhhcc-ccccccCcceEEEEeCC-CcCccchHHHHH
Confidence 4666776 4889999999886532 3 44444444454544443211 01000 2344444332 223345555443
Q ss_pred hcccccCCccEEEEEcCCCCCCHHHHHHHHHHHcc
Q 041566 316 MGCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKG 350 (687)
Q Consensus 316 l~~~~~a~~d~V~~lDaD~~~~pd~L~~lv~~f~~ 350 (687)
.... .-+ +.++++.+|.+.+.+ +.+++..+..
T Consensus 98 ~~~~-~~~-~~flv~~gD~i~~~d-l~~~l~~h~~ 129 (217)
T cd04197 98 DAKG-LIR-GDFILVSGDVVSNID-LKEILEEHKE 129 (217)
T ss_pred hhcc-ccC-CCEEEEeCCeeeccC-HHHHHHHHHH
Confidence 2211 112 346699999887654 5566666653
No 200
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=27.19 E-value=2.3e+02 Score=30.49 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=39.1
Q ss_pred eEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHH
Q 041566 234 MVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKA 284 (687)
Q Consensus 234 ~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~ 284 (687)
.+.+++-+.|.++.++-+|+|+.+..-=. +..+|+.-|+-..++-++++.
T Consensus 118 ~~vlV~qVHnRp~Ylr~lveSlrk~kGI~-~tLlifSHD~~~~eiN~~I~~ 167 (455)
T KOG2791|consen 118 RVVLVLQVHNRPQYLRVLVESLRKVKGIS-ETLLIFSHDGYFEEINRIIES 167 (455)
T ss_pred eEEEEEEEcCcHHHHHHHHHHHHhccCcc-ceEEEEeccchHHHHHHHHhh
Confidence 68888999999999999999998744223 355778888887777777764
No 201
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=27.00 E-value=3.3e+02 Score=26.63 Aligned_cols=95 Identities=13% Similarity=0.215 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccCCc
Q 041566 245 REVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKDY 324 (687)
Q Consensus 245 ~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~~ 324 (687)
...+..+|+.+.+....+ + |+|.-| ++...+.++ +.+..+..+... -.. -......++++....+.
T Consensus 24 kpLi~~~i~~a~~s~~~d-~--IvVaTd--~~~i~~~~~-------~~g~~v~~~~~~-~~~-~~~r~~~~~~~~~~~~~ 89 (217)
T PF02348_consen 24 KPLIEYVIERAKQSKLID-E--IVVATD--DEEIDDIAE-------EYGAKVIFRRGS-LAD-DTDRFIEAIKHFLADDE 89 (217)
T ss_dssp EEHHHHHHHHHHHTTTTS-E--EEEEES--SHHHHHHHH-------HTTSEEEE--TT-SSS-HHHHHHHHHHHHTCSTT
T ss_pred ccHHHHHHHHHHhCCCCC-e--EEEeCC--CHHHHHHHH-------HcCCeeEEcChh-hcC-CcccHHHHHHHhhhhHH
Confidence 458899999999876554 3 544443 344444444 355666544322 222 22222333332111256
Q ss_pred cEEEEEcCCC-CCCHHHHHHHHHHHccCCC
Q 041566 325 EFVAIFDADF-QPTPDFLKKTIPYFKGNDD 353 (687)
Q Consensus 325 d~V~~lDaD~-~~~pd~L~~lv~~f~~~p~ 353 (687)
++++.+.+|+ ..+|+.+.+++..+.+++.
T Consensus 90 ~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~ 119 (217)
T PF02348_consen 90 DIVVRLQGDSPLLDPTSIDRAIEDIREANE 119 (217)
T ss_dssp SEEEEESTTETT--HHHHHHHHHHHHHSTT
T ss_pred hhccccCCeeeECCHHHHHHHHHHHhcCch
Confidence 6999999998 5599999999999987543
No 202
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=26.79 E-value=3.3e+02 Score=25.56 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCccCchhH
Q 041566 118 RFYRAIKWMLILVISLLCFELAAYFKGWHFSPPT 151 (687)
Q Consensus 118 ~~~~~~~~~l~~~~~ll~~~~~~~~~~w~~~~~~ 151 (687)
|.++++..+..+..+.++-+.+.+.-+.-+|.++
T Consensus 5 ~~~~~l~ql~ill~~~~lGe~i~~ll~lPiPGsV 38 (141)
T PRK04125 5 KVYSFLHQAFIFAAIMLISNIIASFLPIPMPASV 38 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHH
Confidence 4566666555555556666777776666667665
No 203
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=26.40 E-value=4.4e+02 Score=28.97 Aligned_cols=100 Identities=12% Similarity=0.180 Sum_probs=55.8
Q ss_pred CCeEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhH
Q 041566 232 YPMVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGN 311 (687)
Q Consensus 232 ~P~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~a 311 (687)
.|+-.+-+ +....++.+++.+.+... -++ |+|+-+.... +..+.... ... .+.+. . +.......
T Consensus 23 ~pKqll~l---~GkPll~~tl~~l~~~~~-i~~--IvVVv~~~~~---~~~~~~~~---~~~-~v~~v--~-gG~~r~~S 86 (378)
T PRK09382 23 VKKQWLRI---GGKPLWLHVLENLSSAPA-FKE--IVVVIHPDDI---AYMKKALP---EIK-FVTLV--T-GGATRQES 86 (378)
T ss_pred CCeeEEEE---CCeeHHHHHHHHHhcCCC-CCe--EEEEeChHHH---HHHHHhcc---cCC-eEEEe--C-CCchHHHH
Confidence 35444433 455788899999887531 123 3334322222 22222111 111 12222 1 11124566
Q ss_pred HHHHhcccccCCccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 312 LNSAMGCDYVKDYEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 312 Ln~gl~~~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
+..|++. .+.|+|++.|+|. .++++.+++++..+.+
T Consensus 87 V~~gL~~---l~~d~VLVhdadrPfv~~e~I~~li~~~~~ 123 (378)
T PRK09382 87 VRNALEA---LDSEYVLIHDAARPFVPKELIDRLIEALDK 123 (378)
T ss_pred HHHHHHh---cCCCeEEEeeccccCCCHHHHHHHHHHhhc
Confidence 7778873 3448999999997 6699999999998864
No 204
>PRK10122 GalU regulator GalF; Provisional
Probab=25.12 E-value=8.2e+02 Score=25.72 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=58.8
Q ss_pred EeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHH---------------HHHHH---hhcCcEEEEE
Q 041566 238 QIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKA---------------EVLKW---QQRGVHIIYR 299 (687)
Q Consensus 238 iIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~---------------~~~~~---~~~~v~i~~~ 299 (687)
.+|..+. ..++..|+++.+..- ++ |+|+-....+...+.+.. ..+.. ...++++.+.
T Consensus 28 llpi~gk-piI~~~l~~l~~~Gi--~~--i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~ 102 (297)
T PRK10122 28 MLPIVDK-PMIQYIVDEIVAAGI--KE--IVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV 102 (297)
T ss_pred eeEECCE-EHHHHHHHHHHHCCC--CE--EEEEcCCChHHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceEEEe
Confidence 4566665 788889999888652 23 444433333333332211 00000 0135566666
Q ss_pred eccCCCCChHhHHHHHhcccccCCccEEEEEcCCCCCCHH-------HHHHHHHHHcc
Q 041566 300 HRLIRSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTPD-------FLKKTIPYFKG 350 (687)
Q Consensus 300 ~r~~~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~pd-------~L~~lv~~f~~ 350 (687)
..+.. .|-++|+..+... ..+.+++++. +|+..+++ .+.+++.....
T Consensus 103 ~q~~~-lGtg~al~~a~~~--l~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~ 156 (297)
T PRK10122 103 RQGQP-LGLGHSILCARPA--IGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNE 156 (297)
T ss_pred ecCCc-CchHHHHHHHHHH--cCCCCEEEEE-CCeeccCccccccchhHHHHHHHHHH
Confidence 54444 4478998888774 3345777777 77776543 57788876653
No 205
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=24.90 E-value=4.2e+02 Score=26.99 Aligned_cols=103 Identities=14% Similarity=0.085 Sum_probs=56.5
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHH------HHHHHh-----------hcCcEEEEEec
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKA------EVLKWQ-----------QRGVHIIYRHR 301 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~------~~~~~~-----------~~~v~i~~~~r 301 (687)
+|..+. ..+..+|+++.+.... + |+|+-....+...+.+.. ...+.. ..+.++.+...
T Consensus 26 lpv~gk-pli~~~l~~l~~~gi~--~--i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (267)
T cd02541 26 LPIVDK-PVIQYIVEEAVAAGIE--D--IIIVTGRGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQ 100 (267)
T ss_pred eEECCE-EHHHHHHHHHHHCCCC--E--EEEEeCCchHHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEEEEc
Confidence 555554 7888899998875432 3 344444333333332211 000000 01345555543
Q ss_pred cCCCCChHhHHHHHhcccccCCccEEEEEcCCCCCCH-H-HHHHHHHHHcc
Q 041566 302 LIRSGYKAGNLNSAMGCDYVKDYEFVAIFDADFQPTP-D-FLKKTIPYFKG 350 (687)
Q Consensus 302 ~~~~ggKa~aLn~gl~~~~~a~~d~V~~lDaD~~~~p-d-~L~~lv~~f~~ 350 (687)
+.. .|-++++..+... ..+ +-++++.+|..... + .+++++..+..
T Consensus 101 ~~~-~Gt~~al~~~~~~--i~~-~~~lv~~gD~~~~~~~~~~~~l~~~~~~ 147 (267)
T cd02541 101 KEP-LGLGHAVLCAKPF--IGD-EPFAVLLGDDLIDSKEPCLKQLIEAYEK 147 (267)
T ss_pred CCC-CChHHHHHHHHHH--hCC-CceEEEECCeEEeCCchHHHHHHHHHHH
Confidence 333 3478888888773 223 55677778886654 3 68888887753
No 206
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=24.71 E-value=6.3e+02 Score=25.97 Aligned_cols=93 Identities=12% Similarity=0.041 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcccccCCc
Q 041566 245 REVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGCDYVKDY 324 (687)
Q Consensus 245 ~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~~~~a~~ 324 (687)
...+..+++.+.+.... ++ |+|+-.... .+.++...++ .+.++.+. .... ...+.+..|++.. ..+.
T Consensus 52 kpll~~tl~~~~~~~~i-~~--IvVV~~~~~---~~~~~~~~~~---~~~~i~~v--~gg~-~r~~SV~~gl~~l-~~~~ 118 (252)
T PLN02728 52 QPIALYSLYTFARMPEV-KE--IVVVCDPSY---RDVFEEAVEN---IDVPLKFA--LPGK-ERQDSVFNGLQEV-DANS 118 (252)
T ss_pred eEHHHHHHHHHHhCCCC-Ce--EEEEeCHHH---HHHHHHHHHh---cCCceEEc--CCCC-chHHHHHHHHHhc-cCCC
Confidence 35778888888764322 23 333332211 1222222222 23334332 1111 2455677777632 2357
Q ss_pred cEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 325 EFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 325 d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
++|++.|+|. .++++.+++++.....
T Consensus 119 ~~VlihDaarP~vs~~~i~~li~~~~~ 145 (252)
T PLN02728 119 ELVCIHDSARPLVTSADIEKVLKDAAV 145 (252)
T ss_pred CEEEEecCcCCCCCHHHHHHHHHHHhh
Confidence 8999999986 6699999999988775
No 207
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=23.72 E-value=5.2e+02 Score=28.48 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=48.4
Q ss_pred eecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHHHHhcc
Q 041566 239 IPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLNSAMGC 318 (687)
Q Consensus 239 IP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn~gl~~ 318 (687)
+|..+ ...+..+++.+.+. .+++.| ++ ....+...+.+. +. ..++++++...+ ...|-++++... +
T Consensus 25 lpi~g-kPli~~~i~~l~~~---~~~i~I-vv-~~~~~~i~~~~~----~~-~~~v~~~~~~~~-~~~gt~~al~~~-~- 90 (430)
T PRK14359 25 HTICG-KPMLFYILKEAFAI---SDDVHV-VL-HHQKERIKEAVL----EY-FPGVIFHTQDLE-NYPGTGGALMGI-E- 90 (430)
T ss_pred CEECC-ccHHHHHHHHHHHc---CCcEEE-EE-CCCHHHHHHHHH----hc-CCceEEEEecCc-cCCCcHHHHhhc-c-
Confidence 34544 45777888887764 123433 33 222333333332 11 124444433222 223466776552 2
Q ss_pred cccCCccEEEEEcCCC-CCCHHHHHHHHH
Q 041566 319 DYVKDYEFVAIFDADF-QPTPDFLKKTIP 346 (687)
Q Consensus 319 ~~~a~~d~V~~lDaD~-~~~pd~L~~lv~ 346 (687)
...|.++++++|. ...++.++++..
T Consensus 91 ---~~~d~vlv~~gD~p~~~~~~l~~l~~ 116 (430)
T PRK14359 91 ---PKHERVLILNGDMPLVEKDELEKLLE 116 (430)
T ss_pred ---cCCCeEEEEECCccCCCHHHHHHHHh
Confidence 2468899999998 457888877653
No 208
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=23.63 E-value=1.1e+02 Score=34.85 Aligned_cols=91 Identities=19% Similarity=0.111 Sum_probs=63.2
Q ss_pred eEEEEeecCCchHHHHHHHHHHHcCCCCCCceEEEEEcCCCChhHHHHHHHHHHHHhhcCcEEEEEeccCCCCChHhHHH
Q 041566 234 MVLVQIPMCNEREVYGQSIAAVCIQDWPKERMLVQILDDSDDLDVQLLIKAEVLKWQQRGVHIIYRHRLIRSGYKAGNLN 313 (687)
Q Consensus 234 ~VsViIP~yNE~~~l~~tL~Sl~~q~yP~~~leViVvDD~s~d~t~~~l~~~~~~~~~~~v~i~~~~r~~~~ggKa~aLn 313 (687)
..+|++-+|..++++..+++.+-.+.|-+ + |+||=++..+...++ .|++-|+.+..++.+++. +|
T Consensus 650 QFTvVmLTYERe~VLm~sLeRL~gLPYLn-K--vvVVWNspk~P~ddl------~WPdigvPv~viR~~~Ns------LN 714 (907)
T KOG2264|consen 650 QFTVVMLTYEREAVLMGSLERLHGLPYLN-K--VVVVWNSPKDPPDDL------TWPDIGVPVEVIRVAENS------LN 714 (907)
T ss_pred eEEEEEEEehHHHHHHHHHHHhhCCcccc-e--EEEEeCCCCCChhcc------cCcCCCCceEEEEccccc------cc
Confidence 68999999999999999999999998876 3 677777765555443 367888887766433321 22
Q ss_pred HH-hcccccCCccEEEEEcCCCCCCHHH
Q 041566 314 SA-MGCDYVKDYEFVAIFDADFQPTPDF 340 (687)
Q Consensus 314 ~g-l~~~~~a~~d~V~~lDaD~~~~pd~ 340 (687)
.- +-. -.-..|-|+-+|+|.-+..|-
T Consensus 715 NRFlPw-d~IETEAvLS~DDDahLrhdE 741 (907)
T KOG2264|consen 715 NRFLPW-DRIETEAVLSLDDDAHLRHDE 741 (907)
T ss_pred ccccCc-hhhhheeeeecccchhhhhhh
Confidence 21 111 134578899999997654443
No 209
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=23.18 E-value=5.4e+02 Score=28.02 Aligned_cols=41 Identities=10% Similarity=0.089 Sum_probs=33.7
Q ss_pred ChHhHHHHHhcccccCCccEEEEEcCCC-CCCHHHHHHHHHHHcc
Q 041566 307 YKAGNLNSAMGCDYVKDYEFVAIFDADF-QPTPDFLKKTIPYFKG 350 (687)
Q Consensus 307 gKa~aLn~gl~~~~~a~~d~V~~lDaD~-~~~pd~L~~lv~~f~~ 350 (687)
|-.+.+..|++ ..+.|+++++++|. .++++.+++++..+..
T Consensus 79 G~~~si~~gl~---~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~ 120 (366)
T PRK14489 79 GPLSGILAGLE---HADSEYLFVVACDTPFLPENLVKRLSKALAI 120 (366)
T ss_pred ChHHHHHHHHH---hcCCCcEEEeeCCcCCCCHHHHHHHHHHhhc
Confidence 56777888888 34678999999997 6699999999998753
Done!